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Sample records for 2-d r-z geometry

  1. GBL-2D Version 1.0: a 2D geometry boolean library.

    SciTech Connect

    McBride, Cory L. (Elemental Technologies, American Fort, UT); Schmidt, Rodney Cannon; Yarberry, Victor R.; Meyers, Ray J.

    2006-11-01

    This report describes version 1.0 of GBL-2D, a geometric Boolean library for 2D objects. The library is written in C++ and consists of a set of classes and routines. The classes primarily represent geometric data and relationships. Classes are provided for 2D points, lines, arcs, edge uses, loops, surfaces and mask sets. The routines contain algorithms for geometric Boolean operations and utility functions. Routines are provided that incorporate the Boolean operations: Union(OR), XOR, Intersection and Difference. A variety of additional analytical geometry routines and routines for importing and exporting the data in various file formats are also provided. The GBL-2D library was originally developed as a geometric modeling engine for use with a separate software tool, called SummitView [1], that manipulates the 2D mask sets created by designers of Micro-Electro-Mechanical Systems (MEMS). However, many other practical applications for this type of software can be envisioned because the need to perform 2D Boolean operations can arise in many contexts.

  2. Facial biometrics based on 2D vector geometry

    NASA Astrophysics Data System (ADS)

    Malek, Obaidul; Venetsanopoulos, Anastasios; Androutsos, Dimitrios

    2014-05-01

    The main challenge of facial biometrics is its robustness and ability to adapt to changes in position orientation, facial expression, and illumination effects. This research addresses the predominant deficiencies in this regard and systematically investigates a facial authentication system in the Euclidean domain. In the proposed method, Euclidean geometry in 2D vector space is being constructed for features extraction and the authentication method. In particular, each assigned point of the candidates' biometric features is considered to be a 2D geometrical coordinate in the Euclidean vector space. Algebraic shapes of the extracted candidate features are also computed and compared. The proposed authentication method is being tested on images from the public "Put Face Database". The performance of the proposed method is evaluated based on Correct Recognition (CRR), False Acceptance (FAR), and False Rejection (FRR) rates. The theoretical foundation of the proposed method along with the experimental results are also presented in this paper. The experimental results demonstrate the effectiveness of the proposed method.

  3. ASAP: interactive quantification of 2D airway geometry

    NASA Astrophysics Data System (ADS)

    D'Souza, Neil D.; Reinhardt, Joseph M.; Hoffman, Eric A.

    1996-04-01

    Evaluation of most normal and patho-pulmonary physiology has relied upon indirect measures of pulmonary function which yield global estimates of underlying structural and functional deficits, which are usually very heterogeneous in nature. Early signs of disease are not recognizable by these techniques, nor are they usually recognizable by the manifestation of physical symptoms. As X-ray CT technology has improved, imaging has held a promise to provide the detailed information here-to-fore missing in standard pulmonary function evaluations. A full solution to the imaging and analysis problem requires true dynamic volumetric approaches to facilitate tracking the lung through space during respiratory maneuvers, and following the radiopacified blood and airflow tracers as they pass through the pulmonary vascular bed or wash in or out of the alveolar air spaces. However, high- resolution, high-speed, stacked single-slice approaches for lung imaging have brought the state-of-the-art to a point where quantitative airway evaluation can play an important role in the study of lung disease and normal lung physiology, if one limits the evaluation to those airway segmented sliced in true cross-sections, or to the evaluation of those airway segments for which a true cross-sectional image can be reformatted from the original stacked sections. This paper presents a software system, called ASAP (for Airway Segmentation and Analysis Program), which provides a rapid, minimally-interactive method for objective identification of airway borders and the reporting of associated geometric measures of diameters and wall thicknesses. We demonstrate that this system yields highly reproducible results both within and between observers, and quantitative measures are accurate to within the resolution of the scanner when phantoms of known geometry are evaluated. Results included here demonstrate that the well-accepted half-max criteria for border definition is a rough approximation, which when applied to structures such as intrathoracic airways yields incorrect results. Our analysis shows that the inner and outer wall detection thresholds must be customized based upon the size of the structure of interest.

  4. Boundary treatments for 2D elliptic mesh generation in complex geometries

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This paper presents a boundary treatment method for 2D elliptic mesh generation in complex geometries. Corresponding to Neumann- Dirichlet boundary conditions (sliding boundary conditions), the proposed method aims at achieving orthogonal and smooth nodal distribution along irregular boundaries. In ...

  5. A generalized 2D pencil beam scaling algorithm for proton dose calculation in heterogeneous slab geometries

    SciTech Connect

    Westerly, David C.; Mo Xiaohu; DeLuca, Paul M. Jr.; Tome, Wolfgang A.; Mackie, Thomas R.

    2013-06-15

    Purpose: Pencil beam algorithms are commonly used for proton therapy dose calculations. Szymanowski and Oelfke ['Two-dimensional pencil beam scaling: An improved proton dose algorithm for heterogeneous media,' Phys. Med. Biol. 47, 3313-3330 (2002)] developed a two-dimensional (2D) scaling algorithm which accurately models the radial pencil beam width as a function of depth in heterogeneous slab geometries using a scaled expression for the radial kernel width in water as a function of depth and kinetic energy. However, an assumption made in the derivation of the technique limits its range of validity to cases where the input expression for the radial kernel width in water is derived from a local scattering power model. The goal of this work is to derive a generalized form of 2D pencil beam scaling that is independent of the scattering power model and appropriate for use with any expression for the radial kernel width in water as a function of depth. Methods: Using Fermi-Eyges transport theory, the authors derive an expression for the radial pencil beam width in heterogeneous slab geometries which is independent of the proton scattering power and related quantities. The authors then perform test calculations in homogeneous and heterogeneous slab phantoms using both the original 2D scaling model and the new model with expressions for the radial kernel width in water computed from both local and nonlocal scattering power models, as well as a nonlocal parameterization of Moliere scattering theory. In addition to kernel width calculations, dose calculations are also performed for a narrow Gaussian proton beam. Results: Pencil beam width calculations indicate that both 2D scaling formalisms perform well when the radial kernel width in water is derived from a local scattering power model. Computing the radial kernel width from a nonlocal scattering model results in the local 2D scaling formula under-predicting the pencil beam width by as much as 1.4 mm (21%) at the depth of the Bragg peak for a 220 MeV proton beam in homogeneous water. This translates into a 32% dose discrepancy for a 5 mm Gaussian proton beam. Similar trends were observed for calculations made in heterogeneous slab phantoms where it was also noted that errors tend to increase with greater beam penetration. The generalized 2D scaling model performs well in all situations, with a maximum dose error of 0.3% at the Bragg peak in a heterogeneous phantom containing 3 cm of hard bone. Conclusions: The authors have derived a generalized form of 2D pencil beam scaling which is independent of the proton scattering power model and robust to the functional form of the radial kernel width in water used for the calculations. Sample calculations made with this model show excellent agreement with expected values in both homogeneous water and heterogeneous phantoms.

  6. A generalized 2D pencil beam scaling algorithm for proton dose calculation in heterogeneous slab geometries

    PubMed Central

    Westerly, David C.; Mo, Xiaohu; Tom, Wolfgang A.; Mackie, Thomas R.; DeLuca, Paul M.

    2013-01-01

    Purpose: Pencil beam algorithms are commonly used for proton therapy dose calculations. Szymanowski and Oelfke [Two-dimensional pencil beam scaling: An improved proton dose algorithm for heterogeneous media, Phys. Med. Biol. 47, 33133330 (2002)10.1088/0031-9155/47/18/304] developed a two-dimensional (2D) scaling algorithm which accurately models the radial pencil beam width as a function of depth in heterogeneous slab geometries using a scaled expression for the radial kernel width in water as a function of depth and kinetic energy. However, an assumption made in the derivation of the technique limits its range of validity to cases where the input expression for the radial kernel width in water is derived from a local scattering power model. The goal of this work is to derive a generalized form of 2D pencil beam scaling that is independent of the scattering power model and appropriate for use with any expression for the radial kernel width in water as a function of depth. Methods: Using Fermi-Eyges transport theory, the authors derive an expression for the radial pencil beam width in heterogeneous slab geometries which is independent of the proton scattering power and related quantities. The authors then perform test calculations in homogeneous and heterogeneous slab phantoms using both the original 2D scaling model and the new model with expressions for the radial kernel width in water computed from both local and nonlocal scattering power models, as well as a nonlocal parameterization of Molire scattering theory. In addition to kernel width calculations, dose calculations are also performed for a narrow Gaussian proton beam. Results: Pencil beam width calculations indicate that both 2D scaling formalisms perform well when the radial kernel width in water is derived from a local scattering power model. Computing the radial kernel width from a nonlocal scattering model results in the local 2D scaling formula under-predicting the pencil beam width by as much as 1.4 mm (21%) at the depth of the Bragg peak for a 220 MeV proton beam in homogeneous water. This translates into a 32% dose discrepancy for a 5 mm Gaussian proton beam. Similar trends were observed for calculations made in heterogeneous slab phantoms where it was also noted that errors tend to increase with greater beam penetration. The generalized 2D scaling model performs well in all situations, with a maximum dose error of 0.3% at the Bragg peak in a heterogeneous phantom containing 3 cm of hard bone. Conclusions: The authors have derived a generalized form of 2D pencil beam scaling which is independent of the proton scattering power model and robust to the functional form of the radial kernel width in water used for the calculations. Sample calculations made with this model show excellent agreement with expected values in both homogeneous water and heterogeneous phantoms. PMID:23718585

  7. 2D Laramide geometries and kinematics of the Rocky Mountains, western U.S.A.

    NASA Astrophysics Data System (ADS)

    Erslev, Eric A.

    Kinematic hypotheses for 2D, cross-sectional Laramide deformation in the Rocky Mountains include (1) block-tilting models and (2) basement thrust models with (a) subcrustal shear during low-angle subduction, (b) lithospheric buckling, (c) thickened lower crust under Laramide arches, and (d) crustal buckling during detachment of the upper crust. Vertical tectonic models invoking vertical or normal faults are falsified by major Laramide thrust faults and pervasive minor faults indicating NE-SW to E-W horizontal shortening. Seismic tomography documenting 200-km-thick Rocky Mountain lithosphere contradicts models predicting wholesale removal of North American mantle lithosphere by subcrustal shear during low-angle subduction. Preliminary gravity and deep seismic interpretations indicate a lack of correspondence between the Moho and Laramide arch geometries. This apparent lack of major Laramide faulting and folding of the Moho under the Rockies contradicts block-tilting models invoking reverse faults cutting the Moho and lithospheric buckling models. In addition, the maximum distances between Laramide arch culminations are generally smaller than buckle wavelengths expected for cratonic continental lithosphere. Geophysical evidence for rootless Laramide arches is incompatible with models predicting pure shear thickening of the lower crust under individual arches but is consistent with models invoking distributed lower crustal thickening over the entire Rockies. Rocky Mountain crustal geometries are most consistent with initial crustal buckling followed by upper crustal detachment on subhorizontal thrust faults that root to the west. An originally thick Rocky Mountain crust may have facilitated delamination and detachment folding of the upper crust during both the Laramide and the Ancestral Rocky Mountain orogenies.

  8. General solution of 2D and 3D superconducting quasiclassical systems: coalescing vortices and nanoisland geometries

    PubMed Central

    Amundsen, Morten; Linder, Jacob

    2016-01-01

    An extension of quasiclassical Keldysh-Usadel theory to higher spatial dimensions than one is crucial in order to describe physical phenomena like charge/spin Hall effects and topological excitations like vortices and skyrmions, none of which are captured in one-dimensional models. We here present a numerical finite element method which solves the non-linearized 2D and 3D quasiclassical Usadel equation relevant for the diffusive regime. We show the application of this on three model systems with non-trivial geometries: (i) a bottlenecked Josephson junction with external flux, (ii) a nanodisk ferromagnet deposited on top of a superconductor and (iii) superconducting islands in contact with a ferromagnet. In case (i), we demonstrate that one may control externally not only the geometrical array in which superconducting vortices arrange themselves, but also to cause coalescence and tune the number of vortices. In case (iii), we show that the supercurrent path can be tailored by incorporating magnetic elements in planar Josephson junctions which also lead to a strong modulation of the density of states. The finite element method presented herein paves the way for gaining insight in physical phenomena which have remained largely unexplored due to the complexity of solving the full quasiclassical equations in higher dimensions. PMID:26961921

  9. General solution of 2D and 3D superconducting quasiclassical systems: coalescing vortices and nanoisland geometries.

    PubMed

    Amundsen, Morten; Linder, Jacob

    2016-01-01

    An extension of quasiclassical Keldysh-Usadel theory to higher spatial dimensions than one is crucial in order to describe physical phenomena like charge/spin Hall effects and topological excitations like vortices and skyrmions, none of which are captured in one-dimensional models. We here present a numerical finite element method which solves the non-linearized 2D and 3D quasiclassical Usadel equation relevant for the diffusive regime. We show the application of this on three model systems with non-trivial geometries: (i) a bottlenecked Josephson junction with external flux, (ii) a nanodisk ferromagnet deposited on top of a superconductor and (iii) superconducting islands in contact with a ferromagnet. In case (i), we demonstrate that one may control externally not only the geometrical array in which superconducting vortices arrange themselves, but also to cause coalescence and tune the number of vortices. In case (iii), we show that the supercurrent path can be tailored by incorporating magnetic elements in planar Josephson junctions which also lead to a strong modulation of the density of states. The finite element method presented herein paves the way for gaining insight in physical phenomena which have remained largely unexplored due to the complexity of solving the full quasiclassical equations in higher dimensions. PMID:26961921

  10. 2D simulations of an inverse-geometry volumetric CT system with multiple detector arrays

    NASA Astrophysics Data System (ADS)

    Mazin, Samuel; Star-Lack, Josh; Schmidt, Taly G.; Pelc, Norbert J.

    2005-04-01

    The performance of an inverse geometry volumetric CT (IGCT) system with multiple detector arrays is being investigated. The system is capable of a complete acquisition of a volume free from cone-beam artifacts with only a single rotation of the gantry. The IGCT system is composed of a large source array opposite three small detector arrays with a field-of-view (FOV) large enough for clinical imaging (45cm). Simulations were conducted to estimate the MTF at different points in the FOV. The simulations involved generating 2D projection data of a 100um circular object followed by a reconstruction algorithm that uses gridding and filtered backprojection. The simulations also modeled finite source spot and detector element sizes. The estimated MTF"s were compared with theoretical MTF"s at 0 cm, 10 cm, and 20 cm away from the isocenter. The simulated MTF"s closely matched the theoretical MTF"s. The MTF in the radial direction was over 10% at 16 lp/cm across the entire FOV while the azimuthal MTF 10% point degraded to 10.4 lp/cm at the edge of the FOV. This degradation in azimuth, which can be corrected for, is due to gridding in the angular direction which is magnified at large distances away from the isocenter. The simulations show promising results for the in-plane resolution of the multiple detector array IGCT system. Noise properties and other factors impacting performance are currently being investigated.

  11. E2GPR - Edit your geometry, Execute GprMax2D and Plot the Results!

    NASA Astrophysics Data System (ADS)

    Pirrone, Daniele; Pajewski, Lara

    2015-04-01

    In order to predict correctly the Ground Penetrating Radar (GPR) response from a particular scenario, Maxwell's equations have to be solved, subject to the physical and geometrical properties of the considered problem and to its initial conditions. Several techniques have been developed in computational electromagnetics, for the solution of Maxwell's equations. These methods can be classified into two main categories: differential and integral equation solvers, which can be implemented in the time or spectral domain. All of the different methods present compromises between computational efficiency, stability, and the ability to model complex geometries. The Finite-Difference Time-Domain (FDTD) technique has several advantages over alternative approaches: it has inherent simplicity, efficiency and conditional stability; it is suitable to treat impulsive behavior of the electromagnetic field and can provide either ultra-wideband temporal waveforms or the sinusoidal steady-state response at any frequency within the excitation spectrum; it is accurate and highly versatile; and it has become a mature and well-researched technique. Moreover, the FDTD technique is suitable to be executed on parallel-processing CPU-based computers and to exploit the modern computer visualisation capabilities. GprMax [1] is a very well-known and largely validated FDTD software tool, implemented by A. Giannopoulos and available for free public download on www.gprmax.com, together with examples and a detailled user guide. The tool includes two electromagnetic wave simulators, GprMax2D and GprMax3D, for the full-wave simulation of two-dimensional and three-dimensional GPR models. In GprMax, everything can be done with the aid of simple commands that are used to define the model parameters and results to be calculated. These commands need to be entered in a simple ASCII text file. GprMax output files can be stored in ASCII or binary format. The software is provided with MATLAB functions, which can be employed to import synthetic data created by GprMax using the binary-format option into MATLAB, in order to be processed and/or visualized. Further MATLAB procedures for the visualization of GprMax synthetic data have been developed within the COST Action TU1208 [2] and are available for free public download on www.GPRadar.eu. The current version of GprMax3D is compiled with OpenMP, supporting multi-platform shared memory multiprocessing which allows GprMax3D to take advantage of multiple cores/CPUs. GprMax2D, instead, exploits a single core when executed. E2GPR is a new software tool, available free of charge for both academic and commercial use, conceived to: 1) assist in the creation, modification and analysis of GprMax2D models, through a Computer-Aided Design (CAD) system; 2) allow parallel and/or distributed computing with GprMax2D, on a network of computers; 3) automatically plot A-scans and B-scans generated by GprMax2D. The CAD and plotter parts of the tool are implemented in Java and can run on any Java Virtual Machine (JVM) regardless of computer architecture. The part of the tool devoted to supporting parallel and/or distributed computing, instead, requires the set up of a Web-Service (on a server emulator or server); in fact, it is currently configured only for Windows Server and Internet Information Services (IIS). In this work, E2GPR is presented and examples are provided which demonstrate its use. The tool can be currently obtained by contacting the authors. It will soon be possible to download it from www.GPRadar.eu. Acknowledgement This work is a contribution to the COST Action TU1208 'Civil Engineering Applications of Ground Penetrating Radar.' The authors thank COST for funding the Action TU1208. References [1] A. Giannopoulos, 'Modelling ground penetrating radar by GprMax,' Construction and Building Materials, vol. 19, pp. 755-762, 2005. [2] L. Pajewski, A. Benedetto, X. Dérobert, A. Giannopoulos, A. Loizos, G. Manacorda, M. Marciniak, C. Plati, G. Schettini, I. Trinks, "Applications of Ground Penetrating Radar in Civil Engineering - COST Action TU1208," Proc. 7th International Workshop on Advanced Ground Penetrating Radar (IWAGPR), 2-5 July 2013, Nantes, France, pp. 1-6.

  12. Geometry and dynamics of a coupled 4 D-2 D quantum field theory

    NASA Astrophysics Data System (ADS)

    Bolognesi, Stefano; Chatterjee, Chandrasekhar; Evslin, Jarah; Konishi, Kenichi; Ohashi, Keisuke; Seveso, Luigi

    2016-01-01

    Geometric and dynamical aspects of a coupled 4 D-2 D interacting quantum field theory — the gauged nonAbelian vortex — are investigated. The fluctuations of the internal 2 D nonAbelian vortex zeromodes excite the massless 4 D Yang-Mills modes and in general give rise to divergent energies. This means that the well-known 2 D C{P}^{N-1} zeromodes associated with a nonAbelian vortex become nonnormalizable.

  13. Self-calibration of cone-beam CT geometry using 3D-2D image registration.

    PubMed

    Ouadah, S; Stayman, J W; Gang, G J; Ehtiati, T; Siewerdsen, J H

    2016-04-01

    Robotic C-arms are capable of complex orbits that can increase field of view, reduce artifacts, improve image quality, and/or reduce dose; however, it can be challenging to obtain accurate, reproducible geometric calibration required for image reconstruction for such complex orbits. This work presents a method for geometric calibration for an arbitrary source-detector orbit by registering 2D projection data to a previously acquired 3D image. It also yields a method by which calibration of simple circular orbits can be improved. The registration uses a normalized gradient information similarity metric and the covariance matrix adaptation-evolution strategy optimizer for robustness against local minima and changes in image content. The resulting transformation provides a 'self-calibration' of system geometry. The algorithm was tested in phantom studies using both a cone-beam CT (CBCT) test-bench and a robotic C-arm (Artis Zeego, Siemens Healthcare) for circular and non-circular orbits. Self-calibration performance was evaluated in terms of the full-width at half-maximum (FWHM) of the point spread function in CBCT reconstructions, the reprojection error (RPE) of steel ball bearings placed on each phantom, and the overall quality and presence of artifacts in CBCT images. In all cases, self-calibration improved the FWHM-e.g. on the CBCT bench, FWHM  =  0.86 mm for conventional calibration compared to 0.65 mm for self-calibration (p  <  0.001). Similar improvements were measured in RPE-e.g. on the robotic C-arm, RPE  =  0.73 mm for conventional calibration compared to 0.55 mm for self-calibration (p  <  0.001). Visible improvement was evident in CBCT reconstructions using self-calibration, particularly about high-contrast, high-frequency objects (e.g. temporal bone air cells and a surgical needle). The results indicate that self-calibration can improve even upon systems with presumably accurate geometric calibration and is applicable to situations where conventional calibration is not feasible, such as complex non-circular CBCT orbits and systems with irreproducible source-detector trajectory. PMID:26961687

  14. Self-calibration of cone-beam CT geometry using 3D–2D image registration

    NASA Astrophysics Data System (ADS)

    Ouadah, S.; Stayman, J. W.; Gang, G. J.; Ehtiati, T.; Siewerdsen, J. H.

    2016-04-01

    Robotic C-arms are capable of complex orbits that can increase field of view, reduce artifacts, improve image quality, and/or reduce dose; however, it can be challenging to obtain accurate, reproducible geometric calibration required for image reconstruction for such complex orbits. This work presents a method for geometric calibration for an arbitrary source-detector orbit by registering 2D projection data to a previously acquired 3D image. It also yields a method by which calibration of simple circular orbits can be improved. The registration uses a normalized gradient information similarity metric and the covariance matrix adaptation-evolution strategy optimizer for robustness against local minima and changes in image content. The resulting transformation provides a ‘self-calibration’ of system geometry. The algorithm was tested in phantom studies using both a cone-beam CT (CBCT) test-bench and a robotic C-arm (Artis Zeego, Siemens Healthcare) for circular and non-circular orbits. Self-calibration performance was evaluated in terms of the full-width at half-maximum (FWHM) of the point spread function in CBCT reconstructions, the reprojection error (RPE) of steel ball bearings placed on each phantom, and the overall quality and presence of artifacts in CBCT images. In all cases, self-calibration improved the FWHM—e.g. on the CBCT bench, FWHM  =  0.86 mm for conventional calibration compared to 0.65 mm for self-calibration (p  <  0.001). Similar improvements were measured in RPE—e.g. on the robotic C-arm, RPE  =  0.73 mm for conventional calibration compared to 0.55 mm for self-calibration (p  <  0.001). Visible improvement was evident in CBCT reconstructions using self-calibration, particularly about high-contrast, high-frequency objects (e.g. temporal bone air cells and a surgical needle). The results indicate that self-calibration can improve even upon systems with presumably accurate geometric calibration and is applicable to situations where conventional calibration is not feasible, such as complex non-circular CBCT orbits and systems with irreproducible source-detector trajectory.

  15. The differences in the development of Rayleigh-Taylor instability in 2D and 3D geometries

    NASA Astrophysics Data System (ADS)

    Kuchugov, P. A.; Rozanov, V. B.; Zmitrenko, N. V.

    2014-06-01

    Results are presented from theoretical analysis and numerical simulations aimed to clarify specific features of Rayleigh-Taylor instability in 2D and 3D geometries. Two series of simulations, one with an isolated single-mode perturbation of the interface and the other with a random density perturbation, were performed. It is shown that the relative evolutions of integral characteristics for the first and the second series are different in 2D and 3D geometries. An attempt is made to interpret this result in the framework of the previously developed evolutionary approach based on the concept of the "critical age" of the perturbation (where, by the age is meant the product of the wavenumber and amplitude). The critical age corresponds to the destruction of the main mushroom-like structure formed during the development of Rayleigh-Taylor instability due to the onset of the secondary Kelvin-Helmholtz instability.

  16. Evaluation of 2D shallow-water model for spillway flow with a complex geometry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Although the two-dimensional (2D) shallow water model is formulated based on several assumptions such as hydrostatic pressure distribution and vertical velocity is negligible, as a simple alternative to the complex 3D model, it has been used to compute water flows in which these assumptions may be ...

  17. ORMGEN. PC: a microcomputer program for automatic mesh generation of 2-D crack geometries

    SciTech Connect

    Bryson, J.W.; Bass, B.R.

    1986-03-01

    ORMGEN.PC (Oak Ridge Mesh GENeration.Personal Computer) automatically generates two-dimensional finite-element models for either cracked or uncracked structures. Element connectivities and nodal point coordinates are written in formats that are compatible for subsequent fracture analysis using either the ORVIRT.PC finite-element microcomputer program or the ADINA/ORVIRT mainframe system. ORMGEN.PC emphasizes generality in its design. Finite-element models can be generated for disks, plates, cylinders, and even geometries with holes, such as compact tension specimens. Either surface or embedded flaw geometries can be modeled. Detailed user instructions describe both preparation of input data and program operation. Sample problems are presented that demonstrate the flexibility of the program. ORMGEN.PC executes on an IBM PC/AT or PC/XT microcomputer; typical runtimes on an IBM PC/AT are 30 to 45 s. 20 figs.

  18. Fully Determined Fluid Velocity Fields for 2D Materials with Complex Geometries.

    NASA Astrophysics Data System (ADS)

    Cassidy, R.; McCloskey, J.; Morrow, P.

    2001-12-01

    The movement of fluid in geological structures is crucial to many geologic processes, yet we remain unable to accurately model transport in realistically complex media in either 2 or 3 dimensions. The essence of the problem is the scale invariance of natural materials, whose geometry directly governs fluid movement and makes the prediction of fluid velocities in realistic situations difficult. At present, discrete modelling techniques such as the Lattice Boltzmann scheme, offer the greatest potential for numerically simulating fluid flow in such geometries. A lack of accurate empirical data for flow through complex geometries, however, means that existing models can only be tested for simple scenarios and, as a consequence, are reliant on the assumption that the models accurately predict flow in the geometries of interest. In response to this, an experimental technique has been developed to measure high-resolution velocity fields in complex media. The media are created by numerically constructing a fractally correlated porous matrices and superimposing them with fractal fracture sets. A modified Lattice Boltzmann scheme can then be used to simulate the fluid velocity field through this numeric model. The experimental technique is based on the translation of this complex medium geometry into a physical model, or flow cell, capable of conducting fluid. To produce the flow cell, the Boolean digital map of the solid and void space in the medium is rendered in plastic using stereolithography. This technique produces a precise copy of the medium in a layer 200x200x2mm, held between 2 transparent plates. The flow cell is then enclosed in a purpose built rig that permits controlled fluid flow and direct observation of the fluid behaviour. The fluid is seeded with 0.01mm neutrally buoyant particles and the velocity of the fluid in 0.5mm interrogation areas is determined using high-resolution digital particle imaging velocimetry. Systematic analysis of all porous subareas using both cross-correlation and streak analysis techniques allows a complete, high-resolution velocity field to be mapped. This measured velocity field is then compared directly with the predicted velocity field, and the accuracy of the numeric scheme evaluated.

  19. Determining Transition State Geometries in Liquids Using 2D-IR

    SciTech Connect

    Harris, Charles; Cahoon, James F.; Sawyer, Karma R.; Schlegel, Jacob P.; Harris, Charles B.

    2007-12-11

    Many properties of chemical reactions are determined by the transition state connecting reactant and product, yet it is difficult to directly obtain any information about these short-lived structures in liquids. We show that two-dimensional infrared (2D-IR) spectroscopy can provide direct information about transition states by tracking the transformation of vibrational modes as a molecule crossed a transition state. We successfully monitored a simple chemical reaction, the fluxional rearrangement of Fe(CO)5, in which the exchange of axial and equatorial CO ligands causes an exchange of vibrational energy between the normal modes of the molecule. This energy transfer provides direct evidence regarding the time scale, transition state, and mechanism of the reaction.

  20. 2D Geometry Predicts Perceived Visual Curvature in Context-Free Viewing

    PubMed Central

    Dresp-Langley, Birgitta

    2015-01-01

    Planar geometry was exploited for the computation of symmetric visual curves in the image plane, with consistent variations in local parameters such as sagitta, chordlength, and the curves' height-to-width ratio, an indicator of the visual area covered by the curve, also called aspect ratio. Image representations of single curves (no local image context) were presented to human observers to measure their visual sensation of curvature magnitude elicited by a given curve. Nonlinear regression analysis was performed on both the individual and the average data using two types of model: (1) a power function where y (sensation) tends towards infinity as a function of x (stimulus input), most frequently used to model sensory scaling data for sensory continua, and (2) an exponential rise to maximum function, which converges towards an asymptotically stable level of y as a function of x. Both models provide satisfactory fits to subjective curvature magnitude as a function of the height-to-width ratio of single curves. The findings are consistent with an in-built sensitivity of the human visual system to local curve geometry, a potentially essential ground condition for the perception of concave and convex objects in the real world. PMID:26346803

  1. Boundary to Constructive Solid Geometry Mappings: a Focus on 2-D Issues

    NASA Technical Reports Server (NTRS)

    Peterson, D. P.

    1985-01-01

    The problem of converting boundary representation (B-rep) to constructive solid geometry representation (CSG-rep) (and vice versa) is discussed in two phases. The first phase entails finding a CSG-rep that defines the region bounded by a polygonal profile curve. The second phase utilizes the results of the first phase to find a CSG-rep for many non-polygonal profile curves. A mathematically concise representation of a region bounded by a polygonal is presented. Namely, any polygonal region bounded by an n sided polygon may be represented by a binary tree which has at most n planar halfspaces as leaves. A structure for this representation and an algorithm for calculating is discussed.

  2. A numerical study on the thermal initiation of a confined explosive in 2-D geometry.

    PubMed

    Aydemir, Erdo?an; Ulas, Abdullah

    2011-02-15

    Insensitive munitions design against thermal stimuli like slow or fast cook-off has become a significant requirement for today's munitions. In order to achieve insensitive munitions characteristics, the response of the energetic material needs to be predicted against heating stimuli. In this study, a 2D numerical code was developed to simulate the slow and fast cook-off heating conditions of confined munitions and to obtain the response of the energetic materials. Computations were performed in order to predict the transient temperature distribution, the ignition time, and the location of ignition in the munitions. These predictions enable the designers to have an idea of when and at which location the energetic material ignites under certain adverse surrounding conditions. In the paper, the development of the code is explained and the numerical results are compared with available experimental and numerical data in the literature. Additionally, a parametric study was performed showing the effect of dimensional scaling of munitions and the heating rate on the ignition characteristics. PMID:21130568

  3. Vectorization of a 2D-1D Iterative Algorithm for the 3D Neutron Transport Problem in Prismatic Geometries

    NASA Astrophysics Data System (ADS)

    Moustafa, Salli; Fvotte, Franois; Lathuilire, Bruno; Plagne, Laurent

    2014-06-01

    The past few years have been marked by a noticeable increase in the interest in 3D whole-core heterogeneous deterministic neutron transport solvers for reference calculations. Due to the extremely large problem sizes tackled by such solvers, they need to use adapted numerical methods and need to be efficiently implemented to take advantage of the full computing power of modern systems. As for numerical methods, one possible approach consists in iterating over resolutions of 2D and 1D MOC problems by taking advantage of prismatic geometries. The MICADO solver, developed at EDF R&D, is a parallel implementation of such a method in distributed and shared memory systems. However it is currently unable to use SIMD vectorization to leverage the full computing power of modern CPUs. In this paper, we describe our first effort to support vectorization in MICADO, typically targeting Intel SSE CPUs. Both the 2D and 1D algorithms are vectorized, allowing for high expected speedups for the whole spatial solver. We present benchmark computations, which show nearly optimal speedups for our vectorized implementation on the TAKEDA case.

  4. On preservation of symmetry in r-z staggered Lagrangian schemes

    NASA Astrophysics Data System (ADS)

    Váchal, Pavel; Wendroff, Burton

    2016-02-01

    In the focus of this work are symmetry preservation, conservation of energy and volume, and other important properties of staggered Lagrangian hydrodynamic schemes in cylindrical (r-z) geometry. It is well known that on quadrilateral cells in r-z, preservation of spherical symmetry, perfect satisfaction of the Geometrical Conservation Law (GCL), and total energy conservation are incompatible even on conforming grids. This paper suggests a novel staggered grid approach that preserves symmetry, conserves total energy by construction and tries to do its best by diminishing the GCL error to the order of entropy error. In particular, the forces from an existing volume consistent scheme are corrected so that spherical symmetry is preserved. The incorporation of subcell pressure mechanism to reduce spurious grid deformations is described and the relation of the new scheme to popular area-weighted and control volume approaches studied.

  5. Specific features of Richtmyer-Meshkov instability growth with 2D and 3D initial perturbation geometry

    NASA Astrophysics Data System (ADS)

    Igonin, V. V.; Krasovsky, G. B.; Kuratov, S. E.; Lebedev, A. I.; Lebedeva, M. O.; Meshkov, E. E.; Myshkina, I. Yu; Ol'khov, O. V.; Polovnikov, A. A.; Polovnikov, E. A.

    2010-12-01

    This paper addresses features of hydrodynamic instability growth on shock arrival at a free surface of condensed matter with deterministic initial perturbations. Richtmyer-Meshkov instability growth processes with initial two-dimensional (2D) and 3D perturbations are considered. Experimental diagnostics included pulsed radiography and a two-piston shock-tube technique. It is shown experimentally that the growth of perturbations strongly depends on material compression in the shock tube. In the hydrodynamic approximation, when the shock Mach number is M>1, the growth rate of initial 2D and 3D perturbations is the same. Under weak shock compression conditions (M~1), it may happen that initial 3D perturbations will not grow at all. Our results conflict with theoretical concepts of perturbation growth associated with Richtmyer-Meshkov instability, according to which the growth rate of initial 3D perturbations at the nonlinear stage should always be higher than the growth rate of 2D perturbations for the same a/? ratios. A computational physics model of the process of interest was developed based on LEGAK simulations.

  6. Edge effect and significant increase of the superconducting transition onset temperature of 2D superconductors in flat and curved geometries

    NASA Astrophysics Data System (ADS)

    Wong, Chi Ho; Lortz, Rolf

    2016-02-01

    In this paper, we present a simple method to model the curvature activated phonon softening in a 2D superconducting layer. The superconducting transition temperature Tc in the case of a 2D rectangular sheet, a hollow cylinder and a hollow sphere of one coherence length thickness is calculated by the quantum mechanical electron-phonon scattering matrix, and a series of collective lattice vibrations in the surface state. We will show that being extremely thin in a flat rectangular shape is not enough to significantly enhance the Tc through phonon softening. However, if a curvature is added, Tc can be strongly enhanced. The increase in Tc with respect to the bulk is greatest in a hollow sphere, intermediate in a hollow cylinder and weakest for the rectangular sheet, when systems of identical length scale are considered. In addition, we find that the edge effect of such a 2D sheet has a strong broadening effect on Tc in addition to the effect of order parameter phase fluctuations.

  7. FACET: a radiation view factor computer code for axisymmetric, 2D planar, and 3D geometries with shadowing

    SciTech Connect

    Shapiro, A.B.

    1983-08-01

    The computer code FACET calculates the radiation geometric view factor (alternatively called shape factor, angle factor, or configuration factor) between surfaces for axisymmetric, two-dimensional planar and three-dimensional geometries with interposed third surface obstructions. FACET was developed to calculate view factors for input to finite-element heat-transfer analysis codes. The first section of this report is a brief review of previous radiation-view-factor computer codes. The second section presents the defining integral equation for the geometric view factor between two surfaces and the assumptions made in its derivation. Also in this section are the numerical algorithms used to integrate this equation for the various geometries. The third section presents the algorithms used to detect self-shadowing and third-surface shadowing between the two surfaces for which a view factor is being calculated. The fourth section provides a user's input guide followed by several example problems.

  8. Constraining complex aquifer geometry with geophysics (2-D ERT and MRS measurements) for stochastic modelling of groundwater flow

    NASA Astrophysics Data System (ADS)

    Chaudhuri, A.; Sekhar, M.; Descloitres, M.; Godderis, Y.; Ruiz, L.; Braun, J. J.

    2013-11-01

    Stochastic modelling is a useful way of simulating complex hard-rock aquifers as hydrological properties (permeability, porosity etc.) can be described using random variables with known statistics. However, very few studies have assessed the influence of topological uncertainty (i.e. the variability of thickness of conductive zones in the aquifer), probably because it is not easy to retrieve accurate statistics of the aquifer geometry, especially in hard rock context. In this paper, we assessed the potential of using geophysical surveys to describe the geometry of a hard rock-aquifer in a stochastic modelling framework. The study site was a small experimental watershed in South India, where the aquifer consisted of a clayey to loamy-sandy zone (regolith) underlain by a conductive fissured rock layer (protolith) and the unweathered gneiss (bedrock) at the bottom. The spatial variability of the thickness of the regolith and fissured layers was estimated by electrical resistivity tomography (ERT) profiles, which were performed along a few cross sections in the watershed. For stochastic analysis using Monte Carlo simulation, the generated random layer thickness was made conditional to the available data from the geophysics. In order to simulate steady state flow in the irregular domain with variable geometry, we used an isoparametric finite element method to discretize the flow equation over an unstructured grid with irregular hexahedral elements. The results indicated that the spatial variability of the layer thickness had a significant effect on reducing the simulated effective steady seepage flux and that using the conditional simulations reduced the uncertainty of the simulated seepage flux. As a conclusion, combining information on the aquifer geometry obtained from geophysical surveys with stochastic modelling is a promising methodology to improve the simulation of groundwater flow in complex hard-rock aquifers.

  9. The structure of salt bridges between Arg+ and Glu- in peptides investigated with 2D-IR spectroscopy: Evidence for two distinct hydrogen-bond geometries

    NASA Astrophysics Data System (ADS)

    Huerta-Viga, Adriana; Amirjalayer, Saeed; Domingos, Srgio R.; Meuzelaar, Heleen; Rupenyan, Alisa; Woutersen, Sander

    2015-06-01

    Salt bridges play an important role in protein folding and in supramolecular chemistry, but they are difficult to detect and characterize in solution. Here, we investigate salt bridges between glutamate (Glu-) and arginine (Arg+) using two-dimensional infrared (2D-IR) spectroscopy. The 2D-IR spectrum of a salt-bridged dimer shows cross peaks between the vibrational modes of Glu- and Arg+, which provide a sensitive structural probe of Glu-⋯Arg+ salt bridges. We use this probe to investigate a ?-turn locked by a salt bridge, an ?-helical peptide whose structure is stabilized by salt bridges, and a coiled coil that is stabilized by intra- and intermolecular salt bridges. We detect a bidentate salt bridge in the ?-turn, a monodentate one in the ?-helical peptide, and both salt-bridge geometries in the coiled coil. To our knowledge, this is the first time 2D-IR has been used to probe tertiary side chain interactions in peptides, and our results show that 2D-IR spectroscopy is a powerful method for investigating salt bridges in solution.

  10. A Piecewise Linear Discontinuous Finite Element Spatial Discretization of the Transport Equation in 2D Cylindrical Geometry

    SciTech Connect

    Bailey, T S; Adams, M L; Chang, J H

    2008-10-01

    We present a new spatial discretization of the discrete-ordinates transport equation in two-dimensional cylindrical (RZ) geometry for arbitrary polygonal meshes. This discretization is a discontinuous finite element method that utilizes the piecewise linear basis functions developed by Stone and Adams. We describe an asymptotic analysis that shows this method to be accurate for many problems in the thick diffusion limit on arbitrary polygons, allowing this method to be applied to radiative transfer problems with these types of meshes. We also present numerical results for multiple problems on quadrilateral grids and compare these results to the well-known bi-linear discontinuous finite element method.

  11. Geometry of laccolith margins: 2D and 3D models of the Late Paleozoic Halle Volcanic Complex (Germany)

    NASA Astrophysics Data System (ADS)

    Schmiedel, T.; Breitkreuz, C.; Grz, I.; Ehling, B.-C.

    2015-03-01

    Well data and core samples from the Late Paleozoic Halle Volcanic Complex (HVC) have been used to describe the geometry of the rhyolitic porphyritic laccoliths and their margins. The HVC formed between 301 and 292 Ma in the intramontane Saale basin, and it comprises mainly rhyolitic subvolcanic bodies (~300 km3) as well as minor lava flows and volcaniclastic deposits. The major HVC laccolith units display aspect ratios ranging between 0.04 and 0.07, and they are separated by tilted and deformed Carboniferous-Permian host sediments. For the margin of the Landsberg laccolith, a major coarsely porphyritic unit of the HVC, an exceptional data set of 63 wells concentrated in an area of 10 km2 reaching to depth of 710 m exists. It was used to explore the 3D geometry and textures, and to deduce an intrusion model. For a 3D visualization of the Landsberg laccolith margin, Geological Object Computer Aided Design; Paradigm software (GOCAD) was used. Curve objects have been derived from the intrusion-host contacts. Automated GOCAD methods for 3D modelling failed. As a result, manual refinement was essential. A major finding of the 3D modelling is the presence of prolate sediment rafts, up to 1,400 m in length and up to 500 m in thickness, surrounded by Landsberg rhyolite. The sedimentary rafts dip away from the laccolith centre. The engulfing laccolith sheets reach thickness of 100-300 m. For other HVC laccolith units (Lbejn, Petersberg, Brachstedt), well data reveal vertical rhyolite/sediment contacts or magma lobes fingering into the host sediments. HVC laccolith contact textures include small-scale shearing of the intruding magma and of the host sediment. In addition, internal shear zones have been detected inside the rhyolite bodies. The present study suggests that the emplacement of successive magma sheets was an important process during laccolith growth in the HVC.

  12. MICADO: Parallel implementation of a 2D-1D iterative algorithm for the 3D neutron transport problem in prismatic geometries

    SciTech Connect

    Fevotte, F.; Lathuiliere, B.

    2013-07-01

    The large increase in computing power over the past few years now makes it possible to consider developing 3D full-core heterogeneous deterministic neutron transport solvers for reference calculations. Among all approaches presented in the literature, the method first introduced in [1] seems very promising. It consists in iterating over resolutions of 2D and ID MOC problems by taking advantage of prismatic geometries without introducing approximations of a low order operator such as diffusion. However, before developing a solver with all industrial options at EDF, several points needed to be clarified. In this work, we first prove the convergence of this iterative process, under some assumptions. We then present our high-performance, parallel implementation of this algorithm in the MICADO solver. Benchmarking the solver against the Takeda case shows that the 2D-1D coupling algorithm does not seem to affect the spatial convergence order of the MOC solver. As for performance issues, our study shows that even though the data distribution is suited to the 2D solver part, the efficiency of the ID part is sufficient to ensure a good parallel efficiency of the global algorithm. After this study, the main remaining difficulty implementation-wise is about the memory requirement of a vector used for initialization. An efficient acceleration operator will also need to be developed. (authors)

  13. On the Effect of Apex Geometry on Wall Shear Stress and Pressure in a 2-D Arterial Bifurcation

    NASA Astrophysics Data System (ADS)

    Robertson, Anne; Haljasmaa, Igor; Galdi, Giovanni

    2000-11-01

    There is strong evidence to support the hypothesis that vascular geometry plays an important role in the initiation and development of cerebral aneurysms as well as other vascular diseases through its influence on hemodynamics. Cerebral aneurysms are nearly always found at arterial bifurcations in and near the Circle of Willis. It is commonly believed that the cause of initiation and development of cerebral aneurysms is at least indirectly related to the effect of hemodynamic wall pressure and shear stress on the arterial tissue at arterial bifurcations. In this work, we use analytical and numerical approaches to investigate the hypothesis that local geometric factors can have a significant impact on the magnitude and spatial gradients of wall pressure and shear stress at the apex of arterial bifurcations. We find that sharp corners such as those at arterial bifurcations and the juncture between grafted vessels can be a source of localized high wall pressure and shear stress. In fact, it can be shown analytically that perfectly sharp corners (zero radius of curvature) will lead to unbounded magnitudes of shear stress and pressure . As the radius of curvature is increased (the corner is rounded), the maximum in magnitude in wall shear stress shifts away from the apex to the lateral sides of the bifurcation. Significantly, the unbounded pressure and shear stress at perfectly sharp corners are unrelated to the fluid inertia. As shown here, the large values of pressure and shear stress which have previously been reported in studies in sharp corner models (zero radius of curvature) are grid dependent approximations for unbounded pressure and shear stress.

  14. Quantitative simulation of ultrasonic time of flight diffraction technique in 2D geometries using Huygens-Fresnel diffraction model: theory and experimental comparison.

    PubMed

    Kolkoori, Sanjeevareddy; Chitti Venkata, Krishnamurthy; Balasubramaniam, Krishnan

    2015-01-01

    This article presents an analytical approach for simulation of ultrasonic diffracted wave signals from cracks in two-dimensional geometries based on a novel Huygens-Fresnel Diffraction Model (HFDM). The model employs the frequency domain far-field displacement expressions derived by Miller and Pursey in 2D for a line source located on the free surface boundary of a semi-infinite elastic medium. At each frequency in the bandwidth of a pulsed excitation, the complex diffracted field is obtained by summation of displacements due to the unblocked virtual sources located in the section containing a vertical crack. The time-domain diffracted wave signal amplitudes in a general isotropic solid are obtained by standard Fast Fourier Transform (FFT) procedures. The wedge based finite aperture transducer refracted beam profiles were modelled by treating the finite dimension transducer as an array of line sources. The proposed model is able to evaluate back-wall signal amplitude and lateral wave signal amplitude, quantitatively. The model predicted range-dependent diffracted amplitudes from the edge of a bottom surface-breaking crack in the isotropic steel specimen were compared with Geometrical Theory of Diffraction (GTD) results. The good agreement confirms the validity of the HFDM method. The simulated ultrasonic time-of-flight diffraction (TOFD) A-scan signals for surface-breaking crack lengths 2 mm and 4 mm in a 10 mm thick aluminium specimen were compared quantitatively with the experimental results. Finally, important applications of HFDM method to the ultrasonic quantitative non-destructive evaluation are discussed. PMID:25200698

  15. Evaluation of gas radiation heat transfer in a 2D axisymmetric geometry using the line-by-line integration and WSGG models

    NASA Astrophysics Data System (ADS)

    Centeno, Felipe Roman; Brittes, Rogério; França, Francis. H. R.; Ezekoye, Ofodike A.

    2015-05-01

    The weighted-sum-of-gray-gases (WSGG) model is widely used in engineering computations of radiative heat transfer due to its relative simplicity, robustness and flexibility. This paper presents the computation of radiative heat transfer in a 2D axisymmetric chamber using two WSGG models to compute radiation in H2O and CO2 mixtures. The first model considers a fixed ratio between the molar concentrations of H2O and CO2, while the second allows the solution for arbitrary ratios. The correlations for both models are based on the HITEMP2010 database. The test case considers typical conditions found in turbulent methane flames, with steep variations in the temperature field as well as in the molar concentrations of the participating species. To assess the accuracy of the WSGG model, the results are compared with a solution obtained by line-by-line integration (LBL) of the spectrum.

  16. Application of the 2-D discrete-ordinates method to multiple scattering of laser radiation

    SciTech Connect

    Zardecki, A.; Gerstl, S.A.W.; Embury, J.F.

    1983-05-01

    The discrete-ordinates finite-element radiation transport code twotran is applied to describe the multiple scattering of a laser beam from a reflecting target. For a model scenario involving a 99% relative humidity rural aerosol we compute the average intensity of the scattered radiation and correction factors to the Beer-Lambert law arising from multiple scattering. As our results indicate, 2-D x-y and r-z geometry modeling can reliably describe a realistic 3-D scenario. Specific results are presented for the two visual ranges of 1.52 and 0.76 km which show that, for sufficiently high aerosol concentrations (e.g., equivalent to V = 0.76 km), the target signature in a distant detector becomes dominated by multiply scattered radiation from interactions of the laser light with the aerosol environment. The merits of the scaling group and the delta-M approximation for the transfer equation are also explored.

  17. Translating Basic Psychopathology Research to Preventive Interventions: A Tribute to John R. Z. Abela

    ERIC Educational Resources Information Center

    Garber, Judy; Korelitz, Katherine; Samanez-Larkin, Silvia

    2012-01-01

    This article highlights how the many important contributions of John R. Z. Abela's research program can inform the development and implementation of interventions for preventing depression in youth. Abela provided evidence of multiple vulnerabilities to depression including cognitive (e.g., inferential style, dysfunctional attitudes, ruminative…

  18. Translating Basic Psychopathology Research to Preventive Interventions: A Tribute to John R. Z. Abela

    ERIC Educational Resources Information Center

    Garber, Judy; Korelitz, Katherine; Samanez-Larkin, Silvia

    2012-01-01

    This article highlights how the many important contributions of John R. Z. Abela's research program can inform the development and implementation of interventions for preventing depression in youth. Abela provided evidence of multiple vulnerabilities to depression including cognitive (e.g., inferential style, dysfunctional attitudes, ruminative

  19. Ab? Bakr Muhammad al-R?z?'s (Rhazes) medical works.

    PubMed

    Richter-Bernburg, L

    1994-01-01

    A-R?z? (Rhazes, with variants, in Medieval Latin), Ab? Bakr Muhammad ibn Zakariyy?' (al-Rayy, close to modern Teher?n, Ir?n, A.D. 865-925), is rightly considered one of the greatest medical practitioners and writers in the period between Galen and the renaissance reemergence of medicine as an empirical discipline (apart from his ranking as one of the most original and independent-minded philosophers of Isl?m). The following biobibliographical survey - in the format of an encyclopaedia article - will focus on those of his medical works which either had the greatest impact on posterity and/or attest most solidly to al-R?z?'s outstanding combination of textual scholarship and clinical observation, outstanding at least with reference to the horizon of his culture. PMID:11623416

  20. Self-Calibration of Cone-Beam CT Geometry Using 3D-2D Image Registration: Development and Application to Task-Based Imaging with a Robotic C-Arm

    PubMed Central

    Ouadah, S.; Stayman, J. W.; Gang, G.; Uneri, A.; Ehtiati, T.; Siewerdsen, J. H.

    2015-01-01

    Purpose Robotic C-arm systems are capable of general noncircular orbits whose trajectories can be driven by the particular imaging task. However obtaining accurate calibrations for reconstruction in such geometries can be a challenging problem. This work proposes a method to perform a unique geometric calibration of an arbitrary C-arm orbit by registering 2D projections to a previously acquired 3D image to determine the transformation parameters representing the system geometry. Methods Experiments involved a cone-beam CT (CBCT) bench system, a robotic C-arm, and three phantoms. A robust 3D-2D registration process was used to compute the 9 degree of freedom (DOF) transformation between each projection and an existing 3D image by maximizing normalized gradient information with a digitally reconstructed radiograph (DRR) of the 3D volume. The quality of the resulting self-calibration was evaluated in terms of the agreement with an established calibration method using a BB phantom as well as image quality in the resulting CBCT reconstruction. Results The self-calibration yielded CBCT images without significant difference in spatial resolution from the standard (true) calibration methods (p-value >0.05 for all three phantoms), and the differences between CBCT images reconstructed using the self and true calibration methods were on the order of 10?3 mm?1. Maximum error in magnification was 3.2%, and back-projection ray placement was within 0.5 mm. Conclusion The proposed geometric self calibration provides a means for 3D imaging on general non-circular orbits in CBCT systems for which a geometric calibration is either not available or not reproducible. The method forms the basis of advanced task-based 3D imaging methods now in development for robotic C-arms. PMID:26388661

  1. Self-calibration of cone-beam CT geometry using 3D-2D image registration: development and application to tasked-based imaging with a robotic C-arm

    NASA Astrophysics Data System (ADS)

    Ouadah, S.; Stayman, J. W.; Gang, G.; Uneri, A.; Ehtiati, T.; Siewerdsen, J. H.

    2015-03-01

    Purpose: Robotic C-arm systems are capable of general noncircular orbits whose trajectories can be driven by the particular imaging task. However obtaining accurate calibrations for reconstruction in such geometries can be a challenging problem. This work proposes a method to perform a unique geometric calibration of an arbitrary C-arm orbit by registering 2D projections to a previously acquired 3D image to determine the transformation parameters representing the system geometry. Methods: Experiments involved a cone-beam CT (CBCT) bench system, a robotic C-arm, and three phantoms. A robust 3D-2D registration process was used to compute the 9 degree of freedom (DOF) transformation between each projection and an existing 3D image by maximizing normalized gradient information with a digitally reconstructed radiograph (DRR) of the 3D volume. The quality of the resulting "self-calibration" was evaluated in terms of the agreement with an established calibration method using a BB phantom as well as image quality in the resulting CBCT reconstruction. Results: The self-calibration yielded CBCT images without significant difference in spatial resolution from the standard ("true") calibration methods (p-value >0.05 for all three phantoms), and the differences between CBCT images reconstructed using the "self" and "true" calibration methods were on the order of 10-3 mm-1. Maximum error in magnification was 3.2%, and back-projection ray placement was within 0.5 mm. Conclusion: The proposed geometric "self" calibration provides a means for 3D imaging on general noncircular orbits in CBCT systems for which a geometric calibration is either not available or not reproducible. The method forms the basis of advanced "task-based" 3D imaging methods now in development for robotic C-arms.

  2. Ultrafast 2D IR microscopy

    PubMed Central

    Baiz, Carlos R.; Schach, Denise; Tokmakoff, Andrei

    2014-01-01

    We describe a microscope for measuring two-dimensional infrared (2D IR) spectra of heterogeneous samples with μm-scale spatial resolution, sub-picosecond time resolution, and the molecular structure information of 2D IR, enabling the measurement of vibrational dynamics through correlations in frequency, time, and space. The setup is based on a fully collinear “one beam” geometry in which all pulses propagate along the same optics. Polarization, chopping, and phase cycling are used to isolate the 2D IR signals of interest. In addition, we demonstrate the use of vibrational lifetime as a contrast agent for imaging microscopic variations in molecular environments. PMID:25089490

  3. Qutb al-D?n Sh?r?z? (1236-1311), Persian polymath physician in the medieval period.

    PubMed

    Nadim, Mostafa; Farjam, Mojtaba

    2014-05-15

    Qutb al-D?n Sh?r?z?, a great physician in the medieval period of the Iranian Islamic age, is also called All?ma (polymath) for his extraordinary expertise in almost all fields of contemporary sciences. The peaceful and cultural environment of his hometown and family contributed to his development despite a time of horror from Mongolian repeated invasions of the Islamic countries. Sh?r?z? never ceased learning and researching and migrated widely in order to find scientists to learn from them. He worked in many centres as a teacher and researcher. He practised medicine and educated students, and his books on other fields of science reflect his comprehensive mastery of most of the basic sciences and the humanities. Sh?r?z??'s social and political roles make him one of the paramount of Iranian elites who contributed to the re-establishment of the Iranian-Islamic civilisation after its destruction by the Mongolians in the thirteenth century. PMID:24833544

  4. Aniso2D

    Energy Science and Technology Software Center (ESTSC)

    2005-07-01

    Aniso2d is a two-dimensional seismic forward modeling code. The earth is parameterized by an X-Z plane in which the seismic properties Can have monoclinic with x-z plane symmetry. The program uses a user define time-domain wavelet to produce synthetic seismograms anrwhere within the two-dimensional media.

  5. Mesh2d

    Energy Science and Technology Software Center (ESTSC)

    2011-12-31

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j0) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assignsmore » an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations.« less

  6. Mesh2d

    SciTech Connect

    2011-12-31

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j0) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assigns an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations.

  7. Vertical 2D Heterostructures

    NASA Astrophysics Data System (ADS)

    Lotsch, Bettina V.

    2015-07-01

    Graphene's legacy has become an integral part of today's condensed matter science and has equipped a whole generation of scientists with an armory of concepts and techniques that open up new perspectives for the postgraphene area. In particular, the judicious combination of 2D building blocks into vertical heterostructures has recently been identified as a promising route to rationally engineer complex multilayer systems and artificial solids with intriguing properties. The present review highlights recent developments in the rapidly emerging field of 2D nanoarchitectonics from a materials chemistry perspective, with a focus on the types of heterostructures available, their assembly strategies, and their emerging properties. This overview is intended to bridge the gap between two majoryet largely disjunctdevelopments in 2D heterostructures, which are firmly rooted in solid-state chemistry or physics. Although the underlying types of heterostructures differ with respect to their dimensions, layer alignment, and interfacial quality, there is common ground, and future synergies between the various assembly strategies are to be expected.

  8. Geometry of the inverted Cretaceous Chañarcillo Basin based on 2-D gravity and field data - an approach to the structure of the western Central Andes of northern Chile

    NASA Astrophysics Data System (ADS)

    Martínez, F.; Maksymowicz, A.; Ochoa, H.; Díaz, D.

    2015-12-01

    This paper discusses an integrated approach that provides new ideas about the structural geometry of the NNE-striking, Cretaceous Chañarcillo Basin located along the eastern Coastal Cordillera in the western Central Andes of northern Chile (27-28° S). The results obtained from the integration of two transverse (E-W) gravity profiles with previous geological information show that the architecture of this basin is defined by a large NNE-SSE-trending and east-vergent anticline ("Tierra Amarilla Anticlinorium"), which is related to the positive reactivation of a former Cretaceous normal fault (Elisa de Bordos Master Fault). Moreover, intercalations of high and low gravity anomalies and steep gravity gradients reveal a set of buried, west-tilted half-grabens associated with a synthetic normal fault pattern. These results, together with the uplift and folding style of the Cretaceous synextensional deposits recognized within the basin, suggest that its structure could be explained by an inverted fault system linked to the shortening of pre-existing Cretaceous normal fault systems. Ages of the synorogenic deposits exposed unconformably over the frontal limb of the Tierra Amarilla Anticlinorium confirm a Late Cretaceous age for the Andean deformation and tectonic inversion of the basin.

  9. MULTI2D - a computer code for two-dimensional radiation hydrodynamics

    NASA Astrophysics Data System (ADS)

    Ramis, R.; Meyer-ter-Vehn, J.; Ramrez, J.

    2009-06-01

    Simulation of radiation hydrodynamics in two spatial dimensions is developed, having in mind, in particular, target design for indirectly driven inertial confinement energy (IFE) and the interpretation of related experiments. Intense radiation pulses by laser or particle beams heat high-Z target configurations of different geometries and lead to a regime which is optically thick in some regions and optically thin in others. A diffusion description is inadequate in this situation. A new numerical code has been developed which describes hydrodynamics in two spatial dimensions (cylindrical R-Z geometry) and radiation transport along rays in three dimensions with the 4 ? solid angle discretized in direction. Matter moves on a non-structured mesh composed of trilateral and quadrilateral elements. Radiation flux of a given direction enters on two (one) sides of a triangle and leaves on the opposite side(s) in proportion to the viewing angles depending on the geometry. This scheme allows to propagate sharply edged beams without ray tracing, though at the price of some lateral diffusion. The algorithm treats correctly both the optically thin and optically thick regimes. A symmetric semi-implicit (SSI) method is used to guarantee numerical stability. Program summaryProgram title: MULTI2D Catalogue identifier: AECV_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AECV_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 151 098 No. of bytes in distributed program, including test data, etc.: 889 622 Distribution format: tar.gz Programming language: C Computer: PC (32 bits architecture) Operating system: Linux/Unix RAM: 2 Mbytes Word size: 32 bits Classification: 19.7 External routines: X-window standard library (libX11.so) and corresponding heading files (X11/*.h) are required. Nature of problem: In inertial confinement fusion and related experiments with lasers and particle beams, energy transport by thermal radiation becomes important. Under these conditions, the radiation field strongly interacts with the hydrodynamic motion through emission and absorption processes. Solution method: The equations of radiation transfer coupled with Lagrangian hydrodynamics, heat diffusion and beam tracing (laser or ions) are solved, in two-dimensional axial-symmetric geometry ( R-Z coordinates) using a fractional step scheme. Radiation transfer is solved with angular resolution. Matter properties are either interpolated from tables (equations-of-state and opacities) or computed by user routines (conductivities and beam attenuation). Restrictions: The code has been designed for typical conditions prevailing in inertial confinement fusion (ns time scale, matter states close to local thermodynamical equilibrium, negligible radiation pressure, ). Although a wider range of situations can be treated, extrapolations to regions beyond this design range need special care. Unusual features: A special computer language, called r94, is used at top levels of the code. These parts have to be converted to standard C by a translation program (supplied as part of the package). Due to the complexity of code (hydro-code, grid generation, user interface, graphic post-processor, translator program, installation scripts) extensive manuals are supplied as part of the package. Running time: 567 seconds for the example supplied.

  10. A Geometric Boolean Library for 2D Objects

    Energy Science and Technology Software Center (ESTSC)

    2006-01-05

    The 2D Boolean Library is a collection of C++ classes -- which primarily represent 2D geometric data and relationships, and routines -- which contain algorithms for 2D geometric Boolean operations and utility functions. Classes are provided for 2D points, lines, arcs, edgeuses, loops, surfaces and mask sets. Routines are provided that incorporate the Boolean operations Union(OR), XOR, Intersection and Difference. Various analytical geometry routines and routines for importing and exporting the data in various filemore »formats, are also provided in the library.« less

  11. Two-Dimensional Radiation Transport in Cylindrical Geometry: Ray-Tracing Compared to Monte Carlo Solutions for a Two-Level Atom

    NASA Astrophysics Data System (ADS)

    Apruzese, J. P.; Giuliani, J. L.

    2008-11-01

    Radiation plays a critical role in the dynamics of Z-pinch implosions. Modeling of Z-pinch experiments therefore needs to include an accurate but efficient algorithm for photon transport. Such algorithms exist for the one-dimensional (1D) approximation. In the present work, we report progress toward this goal in a 2D (r,z) geometry, intended for use in radiation hydrodynamics calculations of dynamically evolving Z pinches. We have tested a radiation transport algorithm that uses discrete ordinate sets for the ray in 3-space, and the multifrequency integral solution along each ray. The published solutions of Avery et al. [1] for the line source functions are used as a benchmark to ensure the accuracy of our approach. We discuss the coupling between the radiation field and kinetics that results in large departures from LTE, ruling out use of the diffusion approximation. [1] L. W. Avery, L. L. House, and A. Skumanich, JQSRT 9, 519 (1969).

  12. 2D stepping drive for hyperspectral systems

    NASA Astrophysics Data System (ADS)

    Endrdy, Csaba; Mehner, Hannes; Grewe, Adrian; Sinzinger, Stefan; Hoffmann, Martin

    2015-07-01

    We present the design, fabrication and characterization of a compact 2D stepping microdrive for pinhole array positioning. The miniaturized solution enables a highly integrated compact hyperspectral imaging system. Based on the geometry of the pinhole array, an inch-worm drive with electrostatic actuators was designed resulting in a compact (1?cm2) positioning system featuring a step size of about 15?m in a 170?m displacement range. The high payload (20?mg) as required for the pinhole array and the compact system design exceed the known electrostatic inch-worm-based microdrives.

  13. Optoelectronics with 2D semiconductors

    NASA Astrophysics Data System (ADS)

    Mueller, Thomas

    2015-03-01

    Two-dimensional (2D) atomic crystals, such as graphene and layered transition-metal dichalcogenides, are currently receiving a lot of attention for applications in electronics and optoelectronics. In this talk, I will review our research activities on electrically driven light emission, photovoltaic energy conversion and photodetection in 2D semiconductors. In particular, WSe2 monolayer p-n junctions formed by electrostatic doping using a pair of split gate electrodes, type-II heterojunctions based on MoS2/WSe2 and MoS2/phosphorene van der Waals stacks, 2D multi-junction solar cells, and 3D/2D semiconductor interfaces will be presented. Upon optical illumination, conversion of light into electrical energy occurs in these devices. If an electrical current is driven, efficient electroluminescence is obtained. I will present measurements of the electrical characteristics, the optical properties, and the gate voltage dependence of the device response. In the second part of my talk, I will discuss photoconductivity studies of MoS2 field-effect transistors. We identify photovoltaic and photoconductive effects, which both show strong photoconductive gain. A model will be presented that reproduces our experimental findings, such as the dependence on optical power and gate voltage. We envision that the efficient photon conversion and light emission, combined with the advantages of 2D semiconductors, such as flexibility, high mechanical stability and low costs of production, could lead to new optoelectronic technologies.

  14. SES2D user's manual

    SciTech Connect

    Johnson, J.D.; Lyon, S.P.

    1982-04-01

    SES2D is an interactive graphics code designed to generate plots of equation of state data from the Los Alamos National Laboratory Group T-4 computer libraries. This manual discusses the capabilities of the code. It describes the prompts and commands and illustrates their use with a sample run.

  15. Extensions of 2D gravity

    SciTech Connect

    Sevrin, A.

    1993-06-01

    After reviewing some aspects of gravity in two dimensions, I show that non-trivial embeddings of sl(2) in a semi-simple (super) Lie algebra give rise to a very large class of extensions of 2D gravity. The induced action is constructed as a gauged WZW model and an exact expression for the effective action is given.

  16. MOSS2D V1

    Energy Science and Technology Software Center (ESTSC)

    2001-01-31

    This software reduces the data from two-dimensional kSA MOS program, k-Space Associates, Ann Arbor, MI. Initial MOS data is recorded without headers in 38 columns, with one row of data per acquisition per lase beam tracked. The final MOSS 2d data file is reduced, graphed, and saved in a tab-delimited column format with headers that can be plotted in any graphing software.

  17. Nanoimprint lithography: 2D or not 2D? A review

    NASA Astrophysics Data System (ADS)

    Schift, Helmut

    2015-11-01

    Nanoimprint lithography (NIL) is more than a planar high-end technology for the patterning of wafer-like substrates. It is essentially a 3D process, because it replicates various stamp topographies by 3D displacement of material and takes advantage of the bending of stamps while the mold cavities are filled. But at the same time, it keeps all assets of a 2D technique being able to pattern thin masking layers like in photon- and electron-based traditional lithography. This review reports about 20 years of development of replication techniques at Paul Scherrer Institut, with a focus on 3D aspects of molding, which enable NIL to stay 2D, but at the same time enable 3D applications which are "more than Moore." As an example, the manufacturing of a demonstrator for backlighting applications based on thermally activated selective topography equilibration will be presented. This technique allows generating almost arbitrary sloped, convex and concave profiles in the same polymer film with dimensions in micro- and nanometer scale.

  18. Compatible, energy and symmetry preserving 2D Lagrangian hydrodynamics in rz-cylindrical coordinates

    SciTech Connect

    Shashkov, Mikhail; Wendroff, Burton; Burton, Donald; Barlow, A; Hongbin, Guo

    2009-01-01

    We present a new discretization for 2D Lagrangian hydrodynamics in rz geometry (cylindrical coordinates) that is compatible, energy conserving and symmetry preserving. We describe discretization of the basic Lagrangian hydrodynamics equations.

  19. 2D quasiperiodic plasmonic crystals

    PubMed Central

    Bauer, Christina; Kobiela, Georg; Giessen, Harald

    2012-01-01

    Nanophotonic structures with irregular symmetry, such as quasiperiodic plasmonic crystals, have gained an increasing amount of attention, in particular as potential candidates to enhance the absorption of solar cells in an angular insensitive fashion. To examine the photonic bandstructure of such systems that determines their optical properties, it is necessary to measure and model normal and oblique light interaction with plasmonic crystals. We determine the different propagation vectors and consider the interaction of all possible waveguide modes and particle plasmons in a 2D metallic photonic quasicrystal, in conjunction with the dispersion relations of a slab waveguide. Using a Fano model, we calculate the optical properties for normal and inclined light incidence. Comparing measurements of a quasiperiodic lattice to the modelled spectra for angle of incidence variation in both azimuthal and polar direction of the sample gives excellent agreement and confirms the predictive power of our model. PMID:23209871

  20. 2-D axisymmetric line transport

    SciTech Connect

    Castor, J.I.; Dykema, P.G. ); Klein, R.I. California Univ., Berkeley, CA . Dept. of Astronomy)

    1990-11-20

    The methods used in the ALTAIR code for computing the transfer of spectral line radiation in two-dimensional axially-symmetric geometry are described. ALTAIR uses a variable-Eddington-tensor approach, in which the transfer equation of non-coherent line scattering is written in moment form, and the moments are closed with an assumed tensor relating the monochromatic pressure tensor and energy density; this Eddington tensor is obtained self-consistently using an accurate angle-dependent solution of the transfer equation. The finite element method for solving the moment system, and the discontinuous finite element method for solving the S{sub n} equation of transfer are described. Two applications of the method are discussed: line formation in uniform cylinders with different length-diameter ratios, and monochromatic transfer on an irregular x-y mesh (the Mordant test problem). 13 refs., 2 figs.

  1. The Energy Eigenvalues of V(r)=-(Z/r) + gr + {lambda}r{sup 2} Potential In The Constant Homogeneous Magnetic Field By The Asymptotic Iteration Method

    SciTech Connect

    Aygun, M.; Sahin, Y.; Boztosun, I.

    2007-04-23

    In a homogeneous magnetic field, we present the solution of the radial Schroedinger equation for V(r)=-(Z/r) + gr + {lambda}r{sup 2} potential. Within an alternative approach, the asymptotic iteration method, we obtain the energy eigenvalues for any arbitrary magnetic fields. The results obtained by using different Larmor frequencies, wL = 0.1, 0.5, 1, 3, 5, 10, are compared with wL = 0 which corresponds to the non-magnetic field case. We present that this method works for weak and strong magnetic field cases i.e. any Larmor frequencies as well as it gives the energy eigenvalues for any n, m quantum numbers.

  2. IGUANA: a high-performance 2D and 3D visualisation system

    NASA Astrophysics Data System (ADS)

    Alverson, G.; Eulisse, G.; Muzaffar, S.; Osborne, I.; Taylor, L.; Tuura, L. A.

    2004-11-01

    The IGUANA project has developed visualisation tools for multiple high-energy experiments. At the core of IGUANA is a generic, high-performance visualisation system based on OpenInventor and OpenGL. This paper describes the back-end and a feature-rich 3D visualisation system built on it, as well as a new 2D visualisation system that can automatically generate 2D views from 3D data, for example to produce R/Z or X/Y detector displays from existing 3D display with little effort. IGUANA has collaborated with the open-source gl2ps project to create a high-quality vector postscript output that can produce true vector graphics output from any OpenGL 2D or 3D display, complete with surface shading and culling of invisible surfaces. We describe how it works. We also describe how one can measure the memory and performance costs of various OpenInventor constructs and how to test scene graphs. We present good patterns to follow and bad patterns to avoid. We have added more advanced tools such as per-object clipping, slicing, lighting or animation, as well as multiple linked views with OpenInventor, and describe them in this paper. We give details on how to edit object appearance efficiently and easily, and even dynamically as a function of object properties, with instant visual feedback to the user.

  3. Confinement of nonneutral plasma in unconventional geometries

    SciTech Connect

    Turner, L.

    1990-01-01

    Our interest in efficient storage of cold, nonneutral plasma has been motivated by the elegant studies on cryogenic nonneutral electron plasmas at UCSD and by the remarkable results obtained from the laser-cooled ion plasmas at the NIST, Boulder, Colorado. Also motivating our study is the perceived need to develop the most expedient means of storing antimatter, whether it be antiprotons for gravitational studies or positrons for a variety of physics experiments and diagnostic purposes. One of the most explored technologies of confining nonneutral plasmas is the Penning trap. The maximum number density of cold nonneutral plasma that can be stored in such a trap is B{sup 2}/2{mu}{sub 0}mc{sup 2}, in which B{sup 2}/2{mu}{sub 0} is the (homogeneous) magnetic energy density and mc{sup 2} is the rest energy of the stored charges. In this paper, we shall present a synopsis of the results of our theoretical exploration of the effect on this hydrostatic limit, the so-called Brillouin'' limit, of altering the geometry of the confining vacuum magnetic field while maintaining the field's azimuthal symmetry. In particular, we shall analyze equilibrium confinement by, first, a poloidal magnetic field, B{sub 4}(r,z){cflx r} + B{sub z}(r,z){cflx z}, and second, a toroidal magnetic field, along with the concomitant electrostatic fields.

  4. NKG2D signaling in cancer immunosurveillance.

    PubMed

    Lpez-Soto, Alejandro; Huergo-Zapico, Leticia; Acebes-Huerta, Andrea; Villa-Alvarez, Mnica; Gonzalez, Segundo

    2015-04-15

    The immune system is able to detect and eliminate transformed cells. The activating receptor NKG2D is particularly relevant for cancer immunosurveillance. NKG2D ligand expression renders tumor cells more susceptible to be killed by NK and T cells, and correlates with the clinical outcome of the disease. However, tumors develop mechanisms to overcome the NKG2D-mediated immune response, which has been associated with poor prognosis and impairment of the clinical benefits of immunotherapy in many human cancers. The highly specific pattern of expression displayed by the NKG2D ligands, mainly confined to tumor cells, together with the strong immune response triggered by this receptor clearly supports the idea that the NKG2D-mediated pathway may be a powerful target for the treatment of cancer. This review draws together the most recent discoveries concerning the biology of the NKG2D signaling and their therapeutic relevance in the context of cancer. PMID:24615398

  5. Rheological Properties of Quasi-2D Fluids in Microgravity

    NASA Technical Reports Server (NTRS)

    Stannarius, Ralf; Trittel, Torsten; Eremin, Alexey; Harth, Kirsten; Clark, Noel; Maclennan, Joseph; Glaser, Matthew; Park, Cheol; Hall, Nancy; Tin, Padetha

    2015-01-01

    In recent years, research on complex fluids and fluids in restricted geometries has attracted much attention in the scientific community. This can be attributed not only to the development of novel materials based on complex fluids but also to a variety of important physical phenomena which have barely been explored. One example is the behavior of membranes and thin fluid films, which can be described by two-dimensional (2D) rheology behavior that is quite different from 3D fluids. In this study, we have investigated the rheological properties of freely suspended films of a thermotropic liquid crystal in microgravity experiments. This model system mimics isotropic and anisotropic quasi 2D fluids [46]. We use inkjet printing technology to dispense small droplets (inclusions) onto the film surface. The motion of these inclusions provides information on the rheological properties of the films and allows the study of a variety of flow instabilities. Flat films have been investigated on a sub-orbital rocket flight and curved films (bubbles) have been studied in the ISS project OASIS. Microgravity is essential when the films are curved in order to avoid sedimentation. The experiments yield the mobility of the droplets in the films as well as the mutual mobility of pairs of particles. Experimental results will be presented for 2D-isotropic (smectic-A) and 2D-nematic (smectic-C) phases.

  6. Modal characteristics of 2D antiguided VCSEL arrays

    NASA Astrophysics Data System (ADS)

    Zhou, Delai; Napartovich, Anatoly P.; Elkin, Nickolai N.; Vysotsky, Dmitri V.; Mawst, Luke J.

    2002-06-01

    Cold-cavity modal behavior of a 2-D (4x4 square lattice geometry) antiguided vertical cavity surface emitting laser (VCSEL) array is studied by the means of an effective-index model and fiber-mode approximation. The calculations show that the 2-D array can operate under a resonant condition, provided that a resonance in both of the 1-D directions is satisfied. Although out-of-phase and adjacent modes will compete with the in-phase mode around its resonant position, our simulation shows that, with the introduction of inter-element loss, the in-phase mode can be favored to lase for a wide range of inter-element width, s, around its resonant position. The effective-index model is shown to be in qualitative agreement with a more comprehensive (exact) 3-D beam-propagation-based simulation, which takes into account the actual layered structure. The 2-D antiguides are constructed from shifting the cavity resonance between the element and inter-element regions and fabricated by chemically selective etching and two-step MOCVD growth. While both diffraction-limited resonant in-phase and out-of-phase modes are observed from top-emitting arrays, a 2-D bottom-emitting structure is adopted to improve heat removal. Preliminary results of 40 mW pulsed and 10 mW CW powers have been obtained from the junction up and down arrays respectively.

  7. 2-D and 3-D computations of curved accelerator magnets

    SciTech Connect

    Turner, L.R.

    1991-01-01

    In order to save computer memory, a long accelerator magnet may be computed by treating the long central region and the end regions separately. The dipole magnets for the injector synchrotron of the Advanced Photon Source (APS), now under construction at Argonne National Laboratory (ANL), employ magnet iron consisting of parallel laminations, stacked with a uniform radius of curvature of 33.379 m. Laplace's equation for the magnetic scalar potential has a different form for a straight magnet (x-y coordinates), a magnet with surfaces curved about a common center (r-{theta} coordinates), and a magnet with parallel laminations like the APS injector dipole. Yet pseudo 2-D computations for the three geometries give basically identical results, even for a much more strongly curved magnet. Hence 2-D (x-y) computations of the central region and 3-D computations of the end regions can be combined to determine the overall magnetic behavior of the magnets. 1 ref., 6 figs.

  8. 2D FEM Heat Transfer & E&M Field Code

    Energy Science and Technology Software Center (ESTSC)

    1992-04-02

    TOPAZ and TOPAZ2D are two-dimensional implicit finite element computer codes for heat transfer analysis. TOPAZ2D can also be used to solve electrostatic and magnetostatic problems. The programs solve for the steady-state or transient temperature or electrostatic and magnetostatic potential field on two-dimensional planar or axisymmetric geometries. Material properties may be temperature or potential-dependent and either isotropic or orthotropic. A variety of time and temperature-dependent boundary conditions can be specified including temperature, flux, convection, and radiation.more » By implementing the user subroutine feature, users can model chemical reaction kinetics and allow for any type of functional representation of boundary conditions and internal heat generation. The programs can solve problems of diffuse and specular band radiation in an enclosure coupled with conduction in the material surrounding the enclosure. Additional features include thermal contact resistance across an interface, bulk fluids, phase change, and energy balances.« less

  9. 2D FEM Heat Transfer & E&M Field Code

    SciTech Connect

    1992-04-02

    TOPAZ and TOPAZ2D are two-dimensional implicit finite element computer codes for heat transfer analysis. TOPAZ2D can also be used to solve electrostatic and magnetostatic problems. The programs solve for the steady-state or transient temperature or electrostatic and magnetostatic potential field on two-dimensional planar or axisymmetric geometries. Material properties may be temperature or potential-dependent and either isotropic or orthotropic. A variety of time and temperature-dependent boundary conditions can be specified including temperature, flux, convection, and radiation. By implementing the user subroutine feature, users can model chemical reaction kinetics and allow for any type of functional representation of boundary conditions and internal heat generation. The programs can solve problems of diffuse and specular band radiation in an enclosure coupled with conduction in the material surrounding the enclosure. Additional features include thermal contact resistance across an interface, bulk fluids, phase change, and energy balances.

  10. 2D FEM Heat Transfer & E&M Field Code

    Energy Science and Technology Software Center (ESTSC)

    1992-04-02

    TOPAZ and TOPAZ2D are two-dimensional implicit finite element computer codes for heat transfer analysis. TOPAZ2D can also be used to solve electrostatic and magnetostatic problems. The programs solve for the steady-state or transient temperature or electrostatic and magnetostatic potential field on two-dimensional planar or axisymmetric geometries. Material properties may be temperature or potential-dependent and either isotropic or orthotropic. A variety of time and temperature-dependent boundary conditions can be specified including temperature, flux, convection, and radiation.moreBy implementing the user subroutine feature, users can model chemical reaction kinetics and allow for any type of functional representation of boundary conditions and internal heat generation. The programs can solve problems of diffuse and specular band radiation in an enclosure coupled with conduction in the material surrounding the enclosure. Additional features include thermal contact resistance across an interface, bulk fluids, phase change, and energy balances.less

  11. ThE SYnthesis of R z Fe4- x Co x Sb12 (R: Yb, La, Ce) skutterudites and their thermoelectric properties

    NASA Astrophysics Data System (ADS)

    Park, Kwan-Ho; Lee, Soonil; Seo, Won-Seon; Shin, Dong-Kil; Kim, Il-Ho

    2014-03-01

    Rare-earth-filled skutterudites R z Fe4- x Co x Sb12 (R: Yb, La, Ce) were prepared, and their transport and thermoelectric properties were examined. All specimens showed p-type conduction and exhibited a degenerate semiconductor behavior. R0.9Fe3CoSb12 had lower electrical conductivities and higher Seebeck coefficients than RFe4Sb12, which meant that Co led to charge compensation through electron donations. All specimens had positive Hall coefficients, and their carrier concentrations were decreased by charge compensation with increasing Co substitution. The thermal conductivities of R0.9Fe3CoSb12 were lower than those of RFe4Sb12 due to the decreased carrier concentration, as well as the lattice scattering induced by the substitution of Co for Fe. Yb-filled and La-filled skutterudites showed enhanced thermoelectric figures of merit through charge compensation with Co, but Ce-filled skutterudites did not. Yb23+ and La3+ ions required charge compensation to stabilize their skutterudite phases, but Ce34+ ions did not.

  12. Accurate coronary modeling procedure using 2D calibrated projections based on 2D centerline points on a single projection

    NASA Astrophysics Data System (ADS)

    Movassaghi, Babak; Rasche, Volker; Viergever, Max A.; Niessen, Wiro J.

    2004-05-01

    For the diagnosis of ischemic heart disease, accurate quantitative analysis of the coronary arteries is important. In coronary angiography, a number of projections is acquired from which 3D models of the coronaries can be reconstructed. A signifcant limitation of the current 3D modeling procedures is the required user interaction for defining the centerlines of the vessel structures in the 2D projections. Currently, the 3D centerlines of the coronary tree structure are calculated based on the interactively determined centerlines in two projections. For every interactively selected centerline point in a first projection the corresponding point in a second projection has to be determined interactively by the user. The correspondence is obtained based on the epipolar-geometry. In this paper a method is proposed to retrieve all the information required for the modeling procedure, by the interactive determination of the 2D centerline-points in only one projection. For every determined 2D centerline-point the corresponding 3D centerline-point is calculated by the analysis of the 1D gray value functions of the corresponding epipolarlines in space for all available 2D projections. This information is then used to build a 3D representation of the coronary arteries using coronary modeling techniques. The approach is illustrated on the analysis of calibrated phantom and calibrated coronary projection data.

  13. 2D conglomerate crystallization of heptahelicene.

    PubMed

    Seibel, Johannes; Zoppi, Laura; Ernst, Karl-Heinz

    2014-08-14

    Two-dimensional (2D) nucleation and crystallization of the helical aromatic hydrocarbon heptahelicene on the single crystalline copper(100) surface has been studied with scanning tunnelling microscopy. In contrast to previously observed racemic 2D crystals on Cu(111), separation into homochiral domains is observed for Cu(100). PMID:24968343

  14. Staring 2-D hadamard transform spectral imager

    DOEpatents

    Gentry, Stephen M.; Wehlburg, Christine M.; Wehlburg, Joseph C.; Smith, Mark W.; Smith, Jody L.

    2006-02-07

    A staring imaging system inputs a 2D spatial image containing multi-frequency spectral information. This image is encoded in one dimension of the image with a cyclic Hadamarid S-matrix. The resulting image is detecting with a spatial 2D detector; and a computer applies a Hadamard transform to recover the encoded image.

  15. Molecular Geometry.

    ERIC Educational Resources Information Center

    Desseyn, H. O.; And Others

    1985-01-01

    Compares linear-nonlinear and planar-nonplanar geometry through the valence-shell electron pairs repulsion (V.S.E.P.R.), Mulliken-Walsh, and electrostatic force theories. Indicates that although the V.S.E.P.R. theory has more advantages for elementary courses, an explanation of the best features of the different theories offers students a better

  16. About Geometry.

    ERIC Educational Resources Information Center

    Tahta, Dick

    1980-01-01

    Some ways of thinking and acting geometrically are described which are related to the approach used by ancient humans. The focus is on intuitive geometric imagery, an attempt to resurrect a way of describing possible viewpoints of geometry outside of those commonly accepted. (MP)

  17. Electromagnetic gauge for measuring the radial particle velocity in 2-D flow

    NASA Astrophysics Data System (ADS)

    Rosenberg, G.; Yaziv, D.; Mayseless, M.

    1982-04-01

    Applications of existing EMV gauges are limited for uniaxial strain configurtions, since the gauge length must remain fixed during the motion. A modification of the electromagnetic technique which provides measurements in 2-D flow is presented. When the problem of a projectile impacting a target is described in cylindrical coordinates (r,z) with z as axis of symmetry, the flow can be defined by the particle velocity components Uz,Ur. A new gauge is made of a thin copper wire having a circular turn shape. The gauge is embedded in the target material in a plane normal to the z axis axisymetrically. Magnetic field is generated by a solenoid wrapped around the target so that the field lines are parallel to the z axis. In a configuration like this, only the radial motion contributes to the EMF, therefore in a uniform filed, B, the measured EMF depends on the radial particle velocity: E=2πBr(t)Ur(t), where the circular turn radius, r(t), is obtained by integrating the velocity Ur(t). This new method hjas been demonstrted by experiment, impacting a rod shaped projectile made of PMMA into a target of the same material. Results are compared with 2-D calculation.

  18. Capturing nonlocal effects in 2D granular flows

    NASA Astrophysics Data System (ADS)

    Kamrin, Ken; Koval, Georg

    2013-03-01

    There is an industrial need, and a scientific desire, to produce a continuum model that can predict the flow of dense granular matter in an arbitrary geometry. A viscoplastic continuum approach, developed over recent years, has shown some ability to approximate steady flow and stress profiles in multiple inhomogeneous flow environments. However, the model incorrectly represents phenomena observed in the slow, creeping flow regime. As normalized flow-rate decreases, granular stresses are observed to become largely rate-independent and a dominating length-scale emerges in the mechanics. This talk attempts to account for these effects, in the simplified case of 2D, using the notion of nonlocal fluidity, which has proven successful in treating nonlocal effects in emulsions. The idea is to augment the local granular fluidity law with a diffusive second-order term scaled by the particle size, which spreads flowing zones accordingly. Below the yield stress, the local contribution vanishes and the fluidity becomes rate-independent, as we require. We implement the modified law in multiple geometries and validate its flow and stress predictions in multiple geometries compared against discrete particle simulations. In so doing, we demonstrate that the nonlocal relation proposed is satisfied universally in a seemingly geometry-independent fashion.

  19. Nanomanufacturing of 2D Transition Metal Dichalcogenide Materials Using Self-Assembled DNA Nanotubes.

    PubMed

    Choi, Jungwook; Chen, Haorong; Li, Feiran; Yang, Lingming; Kim, Steve S; Naik, Rajesh R; Ye, Peide D; Choi, Jong Hyun

    2015-11-01

    2D transition metal dichalcogenides (TMDCs) are nanomanufactured using a generalized strategy with self-assembled DNA nanotubes. DNA nanotubes of various lengths serve as lithographic etch masks for the dry etching of TMDCs. The nanostructured TMDCs are studied by atomic force microscopy, photoluminescence, and Raman spectroscopy. This parallel approach can be used to manufacture 2D TMDC nanostructures of arbitrary geometries with molecular-scale precision. PMID:26313027

  20. 2D foam coarsening in a microfluidic system

    NASA Astrophysics Data System (ADS)

    Marchalot, J.; Lambert, J.; Cantat, I.; Tabeling, P.; Jullien, M.-C.

    2008-09-01

    We report an experimental study of 2D microfoam coarsening confined in a micrometer scale geometry, the typical bubbles diameter being of the order of 50-100 ?m. These experiments raise both fundamental and applicative issues. For applicative issues: what is the typical time of foam ageing (for a polydisperse foam) in microsystems in scope of gas pocket storage in lab-on-a-chips? Experimental results show that a typical time of 2-3 mn is found, leading to the possibility of short-time storing, depending on the application. For fundamental interests, 2D foam ageing is generally described by von Neumann's law (von Neumann J., Metal Interfaces (American Society of Metals, Cleveland) 1952, p. 108) which is based on the hypothesis that bubbles are separated by thin films. Does this hypothesis still hold for foams confined in a 40 ?m height geometry? This problematic is analyzed and it is shown that von Neumann's law still holds but that the diffusion coefficient involved in this law is modified by the confinement which imposes a curvature radius at Plateau borders. More precisely, it is shown that the liquid fraction is high on a film cross-section, in contrast with macrometric experiments where drainage occurs. An analytical description of the diffusion is developped taking into account the fact that soap film height is only a fraction of the cell height. While most of microfoams are flowing, the experimental set-up we describe leads to the achievement of a motionless confined microfoam.

  1. Dark Geometry

    NASA Astrophysics Data System (ADS)

    Cembranos, J. A. R.; Dobado, A.; Maroto, A. L.

    Extra-dimensional theories contain additional degrees of freedom related to the geometry of the extra space which can be interpreted as new particles. Such theories allow to reformulate most of the fundamental problems of physics from a completely different point of view. In this essay, we concentrate on the brane fluctuations which are present in brane-worlds, and how such oscillations of the own space-time geometry along curved extra dimensions can help to resolve the Universe missing mass problem. The energy scales involved in these models are low compared to the Planck scale, and this means that some of the brane fluctuations distinctive signals could be detected in future colliders and in direct or indirect dark matter searches.

  2. Design Application Translates 2-D Graphics to 3-D Surfaces

    NASA Technical Reports Server (NTRS)

    2007-01-01

    Fabric Images Inc., specializing in the printing and manufacturing of fabric tension architecture for the retail, museum, and exhibit/tradeshow communities, designed software to translate 2-D graphics for 3-D surfaces prior to print production. Fabric Images' fabric-flattening design process models a 3-D surface based on computer-aided design (CAD) specifications. The surface geometry of the model is used to form a 2-D template, similar to a flattening process developed by NASA's Glenn Research Center. This template or pattern is then applied in the development of a 2-D graphic layout. Benefits of this process include 11.5 percent time savings per project, less material wasted, and the ability to improve upon graphic techniques and offer new design services. Partners include Exhibitgroup/Giltspur (end-user client: TAC Air, a division of Truman Arnold Companies Inc.), Jack Morton Worldwide (end-user client: Nickelodeon), as well as 3D Exhibits Inc., and MG Design Associates Corp.

  3. 2-d Finite Element Code Postprocessor

    Energy Science and Technology Software Center (ESTSC)

    1996-07-15

    ORION is an interactive program that serves as a postprocessor for the analysis programs NIKE2D, DYNA2D, TOPAZ2D, and CHEMICAL TOPAZ2D. ORION reads binary plot files generated by the two-dimensional finite element codes currently used by the Methods Development Group at LLNL. Contour and color fringe plots of a large number of quantities may be displayed on meshes consisting of triangular and quadrilateral elements. ORION can compute strain measures, interface pressures along slide lines, reaction forcesmore » along constrained boundaries, and momentum. ORION has been applied to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.« less

  4. Brittle damage models in DYNA2D

    SciTech Connect

    Faux, D.R.

    1997-09-01

    DYNA2D is an explicit Lagrangian finite element code used to model dynamic events where stress wave interactions influence the overall response of the system. DYNA2D is often used to model penetration problems involving ductile-to-ductile impacts; however, with the advent of the use of ceramics in the armor-anti-armor community and the need to model damage to laser optics components, good brittle damage models are now needed in DYNA2D. This report will detail the implementation of four brittle damage models in DYNA2D, three scalar damage models and one tensor damage model. These new brittle damage models are then used to predict experimental results from three distinctly different glass damage problems.

  5. 2D electronic materials for army applications

    NASA Astrophysics Data System (ADS)

    O'Regan, Terrance; Perconti, Philip

    2015-05-01

    The record electronic properties achieved in monolayer graphene and related 2D materials such as molybdenum disulfide and hexagonal boron nitride show promise for revolutionary high-speed and low-power electronic devices. Heterogeneous 2D-stacked materials may create enabling technology for future communication and computation applications to meet soldier requirements. For instance, transparent, flexible and even wearable systems may become feasible. With soldier and squad level electronic power demands increasing, the Army is committed to developing and harnessing graphene-like 2D materials for compact low size-weight-and-power-cost (SWAP-C) systems. This paper will review developments in 2D electronic materials at the Army Research Laboratory over the last five years and discuss directions for future army applications.

  6. Matrix models of 2d gravity

    SciTech Connect

    Ginsparg, P.

    1991-12-31

    These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.

  7. Matrix models of 2d gravity

    SciTech Connect

    Ginsparg, P.

    1991-01-01

    These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.

  8. Geometry Dependence of Stellarator Turbulence

    SciTech Connect

    H.E. Mynick, P. Xanthopoulos and A.H. Boozer

    2009-08-10

    Using the nonlinear gyrokinetic code package GENE/GIST, we study the turbulent transport in a broad family of stellarator designs, to understand the geometry-dependence of the microturbulence. By using a set of flux tubes on a given flux surface, we construct a picture of the 2D structure of the microturbulence over that surface, and relate this to relevant geometric quantities, such as the curvature, local shear, and effective potential in the Schrodinger-like equation governing linear drift modes.

  9. Bottom-up design of 2D organic photocatalysts for visible-light driven hydrogen evolution

    NASA Astrophysics Data System (ADS)

    Wang, Peng; Jiang, Xue; Zhao, Jijun

    2016-01-01

    To design two-dimensional (2D) organocatalysts, three series of covalent organic frameworks (COFs) are constructed using bottom-up strategies, i.e. molecular selection, tunable linkage, and functionalization. First-principles calculations are performed to confirm their photocatalytic activity under visible light. Two of our constructed 2D COF models (B1 and C3) are identified as a sufficiently efficient organocatalyst for visible light water splitting. The controllable construction of such COFs from suitable organic subunit, linkage, and functional groups paves the way for correlating band edge alignments and geometry parameters of 2D organic materials. Our theoretical prediction not only provides essential insights into designing 2D-COF photocatalysts for water splitting, but also sparks other technological applications for 2D organic materials.

  10. Bottom-up design of 2D organic photocatalysts for visible-light driven hydrogen evolution.

    PubMed

    Wang, Peng; Jiang, Xue; Zhao, Jijun

    2016-01-27

    To design two-dimensional (2D) organocatalysts, three series of covalent organic frameworks (COFs) are constructed using bottom-up strategies, i.e. molecular selection, tunable linkage, and functionalization. First-principles calculations are performed to confirm their photocatalytic activity under visible light. Two of our constructed 2D COF models (B1 and C3) are identified as a sufficiently efficient organocatalyst for visible light water splitting. The controllable construction of such COFs from suitable organic subunit, linkage, and functional groups paves the way for correlating band edge alignments and geometry parameters of 2D organic materials. Our theoretical prediction not only provides essential insights into designing 2D-COF photocatalysts for water splitting, but also sparks other technological applications for 2D organic materials. PMID:26704386

  11. Glitter in a 2D monolayer.

    PubMed

    Yang, Li-Ming; Dornfeld, Matthew; Frauenheim, Thomas; Ganz, Eric

    2015-10-21

    We predict a highly stable and robust atomically thin gold monolayer with a hexagonal close packed lattice stabilized by metallic bonding with contributions from strong relativistic effects and aurophilic interactions. We have shown that the framework of the Au monolayer can survive 10 ps MD annealing simulations up to 1400 K. The framework is also able to survive large motions out of the plane. Due to the smaller number of bonds per atom in the 2D layer compared to the 3D bulk we observe significantly enhanced energy per bond (0.94 vs. 0.52 eV per bond). This is similar to the increase in bond strength going from 3D diamond to 2D graphene. It is a non-magnetic metal, and was found to be the global minima in the 2D space. Phonon dispersion calculations demonstrate high kinetic stability with no negative modes. This 2D gold monolayer corresponds to the top monolayer of the bulk Au(111) face-centered cubic lattice. The close-packed lattice maximizes the aurophilic interactions. We find that the electrons are completely delocalized in the plane and behave as 2D nearly free electron gas. We hope that the present work can inspire the experimental fabrication of novel free standing 2D metal systems. PMID:26376707

  12. Drop Size Distributions Measured by a 2D Video Disdrometer: Comparison with Dual-Polarization Radar Data.

    NASA Astrophysics Data System (ADS)

    Schuur, Terry J.; Ryzhkov, Alexander V.; Zrni, Dusan S.; Schnhuber, Michael

    2001-06-01

    An analysis of drop size distributions (DSDs) measured in four very different precipitation regimes is presented and is compared with polarimetric radar measurements. The DSDs are measured by a 2D video disdrometer, which is designed to measure drop size, shape, and fall speed with unprecedented accuracy. The observations indicate that significant DSD variability exists not only from one event to the next, but also within each system. Also, despite having vastly different storm structures and maximum rain rates, large raindrops with diameters greater than 5 mm occurred with each system. By comparing the occurrence of large drops with rainfall intensity, the authors find that the largest median diameters are not always associated with the heaviest rainfall, but are sometimes located either in advance of convective cores or, occasionally, in stratiform regions where rainfall rates are relatively low. Disdrometer and polarimetric radar measurements of radar reflectivity Z, differential reflectivity ZDR, specific differential phase KDP, and R(Z) and R(KDP) rain-rate estimators are compared in detail. Overall agreement is good, but it is found that both R(Z) and R(KDP) underestimate rain rate when the DSD is dominated by small drops and overestimate rain rate when the DSD is dominated by large drops. The results indicate that a classification of different rain types (associated with different DSDs) should be an essential part of polarimetric rainfall estimation. Furthermore, observations suggest that ZDR is a key parameter for making such a distinction. Last, the authors compute and compare maximum and average of gamma shape, slope, and intercept parameters for all four precipitation events. Potential measurement errors with the 2D video disdrometer are also discussed.

  13. 'Graphenization' of 2D simple monatomic liquids.

    PubMed

    Hoang, Vo Van

    2014-05-21

    We present molecular dynamics (MD) simulations of the formation of 2D materials with a honeycomb structure from 2D simple monatomic liquids with honeycomb interaction potential (Rechtsman et al 2005 Phys. Rev. Lett. 95 228301). Models are observed by cooling from the melt at various cooling rates. Thermodynamics of the phase transitions is analyzed in detail. Depending on the cooling rate, amorphous or crystalline honeycomb structures have been found. Structural properties of the crystalline honeycomb structure are studied via radial distribution function (RDF), coordination number and ring distribution, including 2D visualization of the atomic configurations. We find evidence for the existence of polycrystalline honeycomb structures and new structural defects, not previously reported. The atomic mechanism that forms the solid phase of a honeycomb structure from the liquid state has been analyzed by monitoring the spatio-temporal arrangement of atoms in 6-fold rings and/or atoms with the coordination number [Formula: see text], occurring upon cooling from the melt. Since knowledge of how real 2D solids with honeycomb structures form from the vapor or liquid phase is still completely lacking, our simulations highlight the situation and give a deeper understanding of the structure and thermodynamics of real 2D materials such as graphene, silicene, germanene, etc. PMID:24769527

  14. 2D microwave imaging reflectometer electronics.

    PubMed

    Spear, A G; Domier, C W; Hu, X; Muscatello, C M; Ren, X; Tobias, B J; Luhmann, N C

    2014-11-01

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program. PMID:25430247

  15. 2D microwave imaging reflectometer electronics

    SciTech Connect

    Spear, A. G.; Domier, C. W. Hu, X.; Muscatello, C. M.; Ren, X.; Luhmann, N. C.; Tobias, B. J.

    2014-11-15

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program.

  16. Decoding 2-D Maps by Autocovariance Function.

    PubMed

    Pietrogrande, Maria Chiara; Marchetti, Nicola; Dondi, Francesco

    2016-01-01

    This chapter describes a mathematical approach based on the study of the 2-D autocovariance function (2-D ACVF) useful for decoding the complex signals resulting from the separation of protein mixtures. The method allows to obtain fundamental analytical information hidden in 2-D PAGE maps by spot overlapping, such as the number of proteins present in the sample and the mean standard deviation of the spots, describing the separation performance. In addition, it is possible to identify ordered patterns potentially present in spot positions, which can be related to the chemical composition of the protein mixture, such as post-translational modifications.The procedure was validated on computer-simulated maps and successfully applied to reference maps obtained from literature sources. PMID:26611407

  17. The Use of Geometric Properties of 2D Arrays across Development

    ERIC Educational Resources Information Center

    Gibson, Brett M.; Leichtman, Michelle D.; Costa, Rachel; Bemis, Rhyannon

    2009-01-01

    Four- to 10-year-old children (n = 50) participated in a 2D search task that included geometry (with- and without lines) and feature conditions. During each of 27 trials, participants watched as a cartoon character hid behind one of three landmarks arranged in a triangle on a computer screen. During feature condition trials, participants could use…

  18. Parallel algorithms for 2-D cylindrical transport equations of Eigenvalue problem

    SciTech Connect

    Wei, J.; Yang, S.

    2013-07-01

    In this paper, aimed at the neutron transport equations of eigenvalue problem under 2-D cylindrical geometry on unstructured grid, the discrete scheme of Sn discrete ordinate and discontinuous finite is built, and the parallel computation for the scheme is realized on MPI systems. Numerical experiments indicate that the designed parallel algorithm can reach perfect speedup, it has good practicality and scalability. (authors)

  19. The Use of Geometric Properties of 2D Arrays across Development

    ERIC Educational Resources Information Center

    Gibson, Brett M.; Leichtman, Michelle D.; Costa, Rachel; Bemis, Rhyannon

    2009-01-01

    Four- to 10-year-old children (n = 50) participated in a 2D search task that included geometry (with- and without lines) and feature conditions. During each of 27 trials, participants watched as a cartoon character hid behind one of three landmarks arranged in a triangle on a computer screen. During feature condition trials, participants could use

  20. 2D and 3D Method of Characteristic Tools for Complex Nozzle Development

    NASA Technical Reports Server (NTRS)

    Rice, Tharen

    2003-01-01

    This report details the development of a 2D and 3D Method of Characteristic (MOC) tool for the design of complex nozzle geometries. These tools are GUI driven and can be run on most Windows-based platforms. The report provides a user's manual for these tools as well as explains the mathematical algorithms used in the MOC solutions.

  1. Toward a 2-D magneto-optical trap for polar molecules

    NASA Astrophysics Data System (ADS)

    Hummon, Matthew; Stuhl, Benjamin; Yeo, Mark; Collopy, Alejandra; Ye, Jun

    2012-06-01

    The additional structure that arises from the rotational degree of freedom in diatomic molecules makes difficult the adaptation of a traditional atomic magneto-optical trap (MOT) for use with molecules. We describe progress toward development of a 2-D MOT for laser cooled yttrium monoxide molecules based on a resonant LC baseball coil geometry.

  2. Core geometry in perspective.

    PubMed

    Dillon, Moira R; Spelke, Elizabeth S

    2015-11-01

    Research on animals, infants, children, and adults provides evidence that distinct cognitive systems underlie navigation and object recognition. Here we examine whether and how these systems interact when children interpret 2D edge-based perspectival line drawings of scenes and objects. Such drawings serve as symbols early in development, and they preserve scene and object geometry from canonical points of view. Young children show limits when using geometry both in non-symbolic tasks and in symbolic map tasks that present 3D contexts from unusual, unfamiliar points of view. When presented with the familiar viewpoints in perspectival line drawings, however, do children engage more integrated geometric representations? In three experiments, children successfully interpreted line drawings with respect to their depicted scene or object. Nevertheless, children recruited distinct processes when navigating based on the information in these drawings, and these processes depended on the context in which the drawings were presented. These results suggest that children are flexible but limited in using geometric information to form integrated representations of scenes and objects, even when interpreting spatial symbols that are highly familiar and faithful renditions of the visual world. PMID:25441089

  3. 2D Radiation MHD K-shell Modeling of Single Wire Array Stainless Steel Experiments on the Z Machine

    SciTech Connect

    Thornhill, J. W.; Giuliani, J. L.; Apruzese, J. P.; Chong, Y. K.; Davis, J.; Dasgupta, A.; Whitney, K. G.; Clark, R. W.; Jones, B.; Coverdale, C. A.; Ampleford, D. J.; Cuneo, M. E.; Deeney, C.

    2009-01-21

    Many physical effects can produce unstable plasma behavior that affect K-shell emission from arrays. Such effects include: asymmetry in the initial density profile, asymmetry in power flow, thermal conduction at the boundaries, and non-uniform wire ablation. Here we consider how asymmetry in the radiation field also contributes to the generation of multidimensional plasma behavior that affects K-shell power and yield. To model this radiation asymmetry, we have incorporated into the MACH2 r-z MHD code a self-consistent calculation of the non-LTE population kinetics based on radiation transport using multi-dimensional ray tracing. Such methodology is necessary for modeling the enhanced radiative cooling that occurs at the anode and cathode ends of the pinch during the run-in phase of the implosion. This enhanced radiative cooling is due to reduced optical depth at these locations producing an asymmetric flow of radiative energy that leads to substantial disruption of large initial diameter (>5 cm) pinches and drives 1D into 2D fluid (i.e., Rayleigh-Taylor like) flows. The impact of this 2D behavior on K-shell power and yield is investigated by comparing 1D and 2D model results with data obtained from a series of single wire array stainless steel experiments performed on the Z generator.

  4. Grid generation for general 2-D regions using hyperbolic equations

    NASA Technical Reports Server (NTRS)

    Cordova, Jeffrey Q.; Barth, Timothy J.

    1988-01-01

    A method for applying a hyperbolic grid generation scheme to the construction of meshes in general 2-D regions has been developed. This approach, which follows the theory developed by Steger and Chaussee (1980) and the algorithm outlined by Kinsey and Barth (1984), is based on improving local grid control. This is accomplished by adding an angle control source term to the equations and using a new algorithm for computing the volume source term. These modifications lead to superior methods for fixing the 'local' problems of hyperbolic grid generation, namely, propagation of initial discontinuities and formation of grid shocks (crossing grid lines). More importantly, a method for solving the global problem of constraining the grid with more than one boundary (internal grid generation) has been developed. These algorithms have been implemented in an interactive grid generation program and the results for several geometries are presented and discussed.

  5. Interpretive 2-D treatment of scrape-off-layer plasmas

    SciTech Connect

    Umansky, M.; Allen, A.; Daughton, W.

    1996-12-31

    The width of the scrape-off-layer in a tokamak is determined by cross field transport. In Alcator C-mod the plasma parameters in the scrape-off-layer are measured at upstream and divertor plate locations. We solve a 2-D scrape-off-layer heat conduction equation in the flux geometry (as determined by EFIT) of the C-mod experiment. Bolometric measurements are utilized for the radiative loss term. We use the end wall probe measurements of electron temperature as a boundary condition and the fast scanning probe measurements of upstream temperature are treated as constraints to determine the cross field transport and thermal conductivity. Results are compared with 1-D onion-skin-model predictions.

  6. Parallel computation of 2D Morse-Smale complexes.

    PubMed

    Shivashankar, Nithin; Senthilnathan, M; Natarajan, Vijay

    2012-10-01

    The Morse-Smale complex is a useful topological data structure for the analysis and visualization of scalar data. This paper describes an algorithm that processes all mesh elements of the domain in parallel to compute the Morse-Smale complex of large 2D datasets at interactive speeds. We employ a reformulation of the Morse-Smale complex using Formans Discrete Morse Theory and achieve scalability by computing the discrete gradient using local accesses only. We also introduce a novel approach to merge gradient paths that ensures accurate geometry of the computed complex. We demonstrate that our algorithm performs well on both multicore environments and on massively parallel architectures such as the GPU. PMID:22156106

  7. Enrichment Activities for Geometry.

    ERIC Educational Resources Information Center

    Usiskin, Zalman

    1983-01-01

    Enrichment activities that teach about geometry as they instruct in geometry are given for some significant topics. The facets of geometry included are tessellations, round robin tournaments, geometric theorems on triangles, and connections between geometry and complex numbers. (MNS)

  8. A comprehensive 2-D divertor data set from DIII-D for edge theory validation

    SciTech Connect

    Fenstermacher, M.E.; Allen, S.L.; Hill, D.N.

    1996-02-01

    A comprehensive set of experiments has been carried out on the DIII-D tokamak to measure the 2-D (R,Z) structure of the divertor plasma in a systematic way using new diagnostics. Measurements cover the divertor radially from inside the X-point to the outer target plate and vertically from the target plate to above the X-point. Identical, repeatable shots were made, each having radial sweeps of the X-point and divertor strike points, to allow complete plasma and radiation profile measurements. Data have been obtained in ohmic, L-mode, ELMing H-mode, and reversed B{sub T} operation ({gradient}B drift away from the X-point). In addition, complete measurements were made of radiative divertor plasmas with a Partially Detached Divertor (PDD) induced by D{sub 2} injection and with a Radiating Mantle induced by Impurity injection (RMI) using neon and nitrogen. The data set includes first observations of the radial and poloidal profiles of the X-point, inner and outer leg plasmas in PDD and RMI radiative divertor operation. Preliminary data analysis shows that intrinsic impurities play a critical role in determining the SOL and divertor conditions.

  9. 2D Mesoscale Simulations of Projectile Penetration into Sand

    NASA Astrophysics Data System (ADS)

    Teeter, R. D.; Dwivedi, S. K.; Felice, C. W.; Gupta, Y. M.

    2007-06-01

    Physical Phenomena governing projectile instabilities during penetration of granular media (e.g. sand) are not well understood. To gain insight into projectile -- granular media interactions, 2-D mesoscale simulations were performed to examine projectile penetration into sand targets with explicit representation of sand grains and representative porosities. The computational procedure used to generate a mesoscale representation of a sand target is presented with emphasis on an energy minimization technique for grain placement and modified Voronoi tessellations to enforce desired grain size and geometry. Simulated sand targets are shown to reproduce grain size distributions and porosities as large as 30% in close agreement with input parameters. Further, initial results from 2D mesoscale simulations, using the ISP-TROTP code, of normal impact of ogive shaped impactors at 0.5 km/s, 1.0 km/s, and 1.5 km/s impact velocities show that heterogeneous deformation in a frictionless granular media can cause deviation of projectile motion from normal direction indicating projectile instability during penetration. Efforts to achieve an improved description of granular media are underway. Work supported by DOE and AFOSR.

  10. Application of 2D Non-Graphene Materials and 2D Oxide Nanostructures for Biosensing Technology.

    PubMed

    Shavanova, Kateryna; Bakakina, Yulia; Burkova, Inna; Shtepliuk, Ivan; Viter, Roman; Ubelis, Arnolds; Beni, Valerio; Starodub, Nickolaj; Yakimova, Rositsa; Khranovskyy, Volodymyr

    2016-01-01

    The discovery of graphene and its unique properties has inspired researchers to try to invent other two-dimensional (2D) materials. After considerable research effort, a distinct "beyond graphene" domain has been established, comprising the library of non-graphene 2D materials. It is significant that some 2D non-graphene materials possess solid advantages over their predecessor, such as having a direct band gap, and therefore are highly promising for a number of applications. These applications are not limited to nano- and opto-electronics, but have a strong potential in biosensing technologies, as one example. However, since most of the 2D non-graphene materials have been newly discovered, most of the research efforts are concentrated on material synthesis and the investigation of the properties of the material. Applications of 2D non-graphene materials are still at the embryonic stage, and the integration of 2D non-graphene materials into devices is scarcely reported. However, in recent years, numerous reports have blossomed about 2D material-based biosensors, evidencing the growing potential of 2D non-graphene materials for biosensing applications. This review highlights the recent progress in research on the potential of using 2D non-graphene materials and similar oxide nanostructures for different types of biosensors (optical and electrochemical). A wide range of biological targets, such as glucose, dopamine, cortisol, DNA, IgG, bisphenol, ascorbic acid, cytochrome and estradiol, has been reported to be successfully detected by biosensors with transducers made of 2D non-graphene materials. PMID:26861346

  11. Application of 2D Non-Graphene Materials and 2D Oxide Nanostructures for Biosensing Technology

    PubMed Central

    Shavanova, Kateryna; Bakakina, Yulia; Burkova, Inna; Shtepliuk, Ivan; Viter, Roman; Ubelis, Arnolds; Beni, Valerio; Starodub, Nickolaj; Yakimova, Rositsa; Khranovskyy, Volodymyr

    2016-01-01

    The discovery of graphene and its unique properties has inspired researchers to try to invent other two-dimensional (2D) materials. After considerable research effort, a distinct “beyond graphene” domain has been established, comprising the library of non-graphene 2D materials. It is significant that some 2D non-graphene materials possess solid advantages over their predecessor, such as having a direct band gap, and therefore are highly promising for a number of applications. These applications are not limited to nano- and opto-electronics, but have a strong potential in biosensing technologies, as one example. However, since most of the 2D non-graphene materials have been newly discovered, most of the research efforts are concentrated on material synthesis and the investigation of the properties of the material. Applications of 2D non-graphene materials are still at the embryonic stage, and the integration of 2D non-graphene materials into devices is scarcely reported. However, in recent years, numerous reports have blossomed about 2D material-based biosensors, evidencing the growing potential of 2D non-graphene materials for biosensing applications. This review highlights the recent progress in research on the potential of using 2D non-graphene materials and similar oxide nanostructures for different types of biosensors (optical and electrochemical). A wide range of biological targets, such as glucose, dopamine, cortisol, DNA, IgG, bisphenol, ascorbic acid, cytochrome and estradiol, has been reported to be successfully detected by biosensors with transducers made of 2D non-graphene materials. PMID:26861346

  12. Optical diffraction from opal-based photonic structures: transition from 2D to 3D regimes

    NASA Astrophysics Data System (ADS)

    Sinev, Ivan S.; Rybin, Mikhail V.; Samusev, Anton K.; Samusev, Kirill B.; Trofimova, Ekaterina Y.; Kurdukov, Dmitry A.; Golubev, Valery G.; Limonov, Mikhail F.

    2012-06-01

    We report on experimental and theoretical investigations of light diffraction from opal films of different thickness. A special attention was paid to the transformation of diffraction patterns upon building up the opal structure from two-dimensional (2D) film structure towards bulk three-dimensional (3D) structure. In our setup the diffraction patterns are displayed on a narrow cylindrical screen with a specimen fixed in its center. The diffraction patterns have been studied visually and recorded in different scattering geometries with the films illuminated with white unpolarized light. With increasing number of layers, certain regions of 2D diffraction patterns fade out and finally form diffraction spots characteristic for 3D diffraction. We also found that stacking faults in bulk opals lead to formation of a 2D-like diffraction pattern, i.e. such structure demonstrate 3D to quasi-2D transition in optical properties.

  13. TOPAZ2D heat transfer code users manual and thermal property data base

    SciTech Connect

    Shapiro, A.B.; Edwards, A.L.

    1990-05-01

    TOPAZ2D is a two dimensional implicit finite element computer code for heat transfer analysis. This user's manual provides information on the structure of a TOPAZ2D input file. Also included is a material thermal property data base. This manual is supplemented with The TOPAZ2D Theoretical Manual and the TOPAZ2D Verification Manual. TOPAZ2D has been implemented on the CRAY, SUN, and VAX computers. TOPAZ2D can be used to solve for the steady state or transient temperature field on two dimensional planar or axisymmetric geometries. Material properties may be temperature dependent and either isotropic or orthotropic. A variety of time and temperature dependent boundary conditions can be specified including temperature, flux, convection, and radiation. Time or temperature dependent internal heat generation can be defined locally be element or globally by material. TOPAZ2D can solve problems of diffuse and specular band radiation in an enclosure coupled with conduction in material surrounding the enclosure. Additional features include thermally controlled reactive chemical mixtures, thermal contact resistance across an interface, bulk fluid flow, phase change, and energy balances. Thermal stresses can be calculated using the solid mechanics code NIKE2D which reads the temperature state data calculated by TOPAZ2D. A three dimensional version of the code, TOPAZ3D is available. The material thermal property data base, Chapter 4, included in this manual was originally published in 1969 by Art Edwards for use with his TRUMP finite difference heat transfer code. The format of the data has been altered to be compatible with TOPAZ2D. Bob Bailey is responsible for adding the high explosive thermal property data.

  14. Explicit 2-D Hydrodynamic FEM Program

    Energy Science and Technology Software Center (ESTSC)

    1996-08-07

    DYNA2D* is a vectorized, explicit, two-dimensional, axisymmetric and plane strain finite element program for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. DYNA2D* contains 13 material models and 9 equations of state (EOS) to cover a wide range of material behavior. The material models implemented in all machine versions are: elastic, orthotropic elastic, kinematic/isotropic elastic plasticity, thermoelastoplastic, soil and crushable foam, linear viscoelastic, rubber, high explosive burn, isotropic elastic-plastic, temperature-dependent elastic-plastic. Themore » isotropic and temperature-dependent elastic-plastic models determine only the deviatoric stresses. Pressure is determined by one of 9 equations of state including linear polynomial, JWL high explosive, Sack Tuesday high explosive, Gruneisen, ratio of polynomials, linear polynomial with energy deposition, ignition and growth of reaction in HE, tabulated compaction, and tabulated.« less

  15. Static & Dynamic Response of 2D Solids

    Energy Science and Technology Software Center (ESTSC)

    1996-07-15

    NIKE2D is an implicit finite-element code for analyzing the finite deformation, static and dynamic response of two-dimensional, axisymmetric, plane strain, and plane stress solids. The code is fully vectorized and available on several computing platforms. A number of material models are incorporated to simulate a wide range of material behavior including elasto-placicity, anisotropy, creep, thermal effects, and rate dependence. Slideline algorithms model gaps and sliding along material interfaces, including interface friction, penetration and single surfacemore » contact. Interactive-graphics and rezoning is included for analyses with large mesh distortions. In addition to quasi-Newton and arc-length procedures, adaptive algorithms can be defined to solve the implicit equations using the solution language ISLAND. Each of these capabilities and more make NIKE2D a robust analysis tool.« less

  16. Explicit 2-D Hydrodynamic FEM Program

    SciTech Connect

    1996-08-07

    DYNA2D* is a vectorized, explicit, two-dimensional, axisymmetric and plane strain finite element program for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. DYNA2D* contains 13 material models and 9 equations of state (EOS) to cover a wide range of material behavior. The material models implemented in all machine versions are: elastic, orthotropic elastic, kinematic/isotropic elastic plasticity, thermoelastoplastic, soil and crushable foam, linear viscoelastic, rubber, high explosive burn, isotropic elastic-plastic, temperature-dependent elastic-plastic. The isotropic and temperature-dependent elastic-plastic models determine only the deviatoric stresses. Pressure is determined by one of 9 equations of state including linear polynomial, JWL high explosive, Sack Tuesday high explosive, Gruneisen, ratio of polynomials, linear polynomial with energy deposition, ignition and growth of reaction in HE, tabulated compaction, and tabulated.

  17. Stochastic Inversion of 2D Magnetotelluric Data

    Energy Science and Technology Software Center (ESTSC)

    2010-07-01

    The algorithm is developed to invert 2D magnetotelluric (MT) data based on sharp boundary parametrization using a Bayesian framework. Within the algorithm, we consider the locations and the resistivity of regions formed by the interfaces are as unknowns. We use a parallel, adaptive finite-element algorithm to forward simulate frequency-domain MT responses of 2D conductivity structure. Those unknown parameters are spatially correlated and are described by a geostatistical model. The joint posterior probability distribution function ismore » explored by Markov Chain Monte Carlo (MCMC) sampling methods. The developed stochastic model is effective for estimating the interface locations and resistivity. Most importantly, it provides details uncertainty information on each unknown parameter. Hardware requirements: PC, Supercomputer, Multi-platform, Workstation; Software requirements C and Fortan; Operation Systems/version is Linux/Unix or Windows« less

  18. Stochastic Inversion of 2D Magnetotelluric Data

    SciTech Connect

    2010-07-01

    The algorithm is developed to invert 2D magnetotelluric (MT) data based on sharp boundary parametrization using a Bayesian framework. Within the algorithm, we consider the locations and the resistivity of regions formed by the interfaces are as unknowns. We use a parallel, adaptive finite-element algorithm to forward simulate frequency-domain MT responses of 2D conductivity structure. Those unknown parameters are spatially correlated and are described by a geostatistical model. The joint posterior probability distribution function is explored by Markov Chain Monte Carlo (MCMC) sampling methods. The developed stochastic model is effective for estimating the interface locations and resistivity. Most importantly, it provides details uncertainty information on each unknown parameter. Hardware requirements: PC, Supercomputer, Multi-platform, Workstation; Software requirements C and Fortan; Operation Systems/version is Linux/Unix or Windows

  19. Static & Dynamic Response of 2D Solids

    Energy Science and Technology Software Center (ESTSC)

    1996-07-15

    NIKE2D is an implicit finite-element code for analyzing the finite deformation, static and dynamic response of two-dimensional, axisymmetric, plane strain, and plane stress solids. The code is fully vectorized and available on several computing platforms. A number of material models are incorporated to simulate a wide range of material behavior including elasto-placicity, anisotropy, creep, thermal effects, and rate dependence. Slideline algorithms model gaps and sliding along material interfaces, including interface friction, penetration and single surfacemorecontact. Interactive-graphics and rezoning is included for analyses with large mesh distortions. In addition to quasi-Newton and arc-length procedures, adaptive algorithms can be defined to solve the implicit equations using the solution language ISLAND. Each of these capabilities and more make NIKE2D a robust analysis tool.less

  20. Compact 2-D graphical representation of DNA

    NASA Astrophysics Data System (ADS)

    Randi?, Milan; Vra?ko, Marjan; Zupan, Jure; Novi?, Marjana

    2003-05-01

    We present a novel 2-D graphical representation for DNA sequences which has an important advantage over the existing graphical representations of DNA in being very compact. It is based on: (1) use of binary labels for the four nucleic acid bases, and (2) use of the 'worm' curve as template on which binary codes are placed. The approach is illustrated on DNA sequences of the first exon of human ?-globin and gorilla ?-globin.

  1. Lorenz-Mie theory for 2D scattering and resonance calculations

    NASA Astrophysics Data System (ADS)

    Gagnon, Denis; Dub, Louis J.

    2015-10-01

    This PhD tutorial is concerned with a description of the two-dimensional generalized Lorenz-Mie theory (2D-GLMT), a well-established numerical method used to compute the interaction of light with arrays of cylindrical scatterers. This theory is based on the method of separation of variables and the application of an addition theorem for cylindrical functions. The purpose of this tutorial is to assemble the practical tools necessary to implement the 2D-GLMT method for the computation of scattering by passive scatterers or of resonances in optically active media. The first part contains a derivation of the vector and scalar Helmholtz equations for 2D geometries, starting from Maxwells equations. Optically active media are included in 2D-GLMT using a recent stationary formulation of the Maxwell-Bloch equations called steady-state ab initio laser theory (SALT), which introduces new classes of solutions useful for resonance computations. Following these preliminaries, a detailed description of 2D-GLMT is presented. The emphasis is placed on the derivation of beam-shape coefficients for scattering computations, as well as the computation of resonant modes using a combination of 2D-GLMT and SALT. The final section contains several numerical examples illustrating the full potential of 2D-GLMT for scattering and resonance computations. These examples, drawn from the literature, include the design of integrated polarization filters and the computation of optical modes of photonic crystal cavities and random lasers.

  2. 2D array based on fermat spiral

    NASA Astrophysics Data System (ADS)

    Martnez, O.; Martn, C. J.; Godoy, G.; Ullate, L. G.

    2010-01-01

    The main challenge faced by 3D ultrasonic imaging with 2D array transducer is the large number of elements required to achieve an acceptable level of quality in the images. Therefore, the optimization of the array layout to reduce the number of active elements in the aperture has been a research topic in the last years. Nowadays, CMUT array technology has made viable the production of 2D arrays with larger flexibility on elements size, shape and position. This is opening new options in 2D array design, allowing to revise as viable alternatives others layouts that had been studied in the past, like circular and Archimedes spiral layout. In this work the problem of designing an imaging system array with a diameter of 60 ? and a limited number of elements using the Fermat spiral layout has been studied. This study has been done for two different numbers of electronic channels (N = 128 and N = 256). As summary, a general discussion of the results and the most interesting cases are presented.

  3. MAGNUM-2D computer code: user's guide

    SciTech Connect

    England, R.L.; Kline, N.W.; Ekblad, K.J.; Baca, R.G.

    1985-01-01

    Information relevant to the general use of the MAGNUM-2D computer code is presented. This computer code was developed for the purpose of modeling (i.e., simulating) the thermal and hydraulic conditions in the vicinity of a waste package emplaced in a deep geologic repository. The MAGNUM-2D computer computes (1) the temperature field surrounding the waste package as a function of the heat generation rate of the nuclear waste and thermal properties of the basalt and (2) the hydraulic head distribution and associated groundwater flow fields as a function of the temperature gradients and hydraulic properties of the basalt. MAGNUM-2D is a two-dimensional numerical model for transient or steady-state analysis of coupled heat transfer and groundwater flow in a fractured porous medium. The governing equations consist of a set of coupled, quasi-linear partial differential equations that are solved using a Galerkin finite-element technique. A Newton-Raphson algorithm is embedded in the Galerkin functional to formulate the problem in terms of the incremental changes in the dependent variables. Both triangular and quadrilateral finite elements are used to represent the continuum portions of the spatial domain. Line elements may be used to represent discrete conduits. 18 refs., 4 figs., 1 tab.

  4. Engineering light outcoupling in 2D materials.

    PubMed

    Lien, Der-Hsien; Kang, Jeong Seuk; Amani, Matin; Chen, Kevin; Tosun, Mahmut; Wang, Hsin-Ping; Roy, Tania; Eggleston, Michael S; Wu, Ming C; Dubey, Madan; Lee, Si-Chen; He, Jr-Hau; Javey, Ali

    2015-02-11

    When light is incident on 2D transition metal dichalcogenides (TMDCs), it engages in multiple reflections within underlying substrates, producing interferences that lead to enhancement or attenuation of the incoming and outgoing strength of light. Here, we report a simple method to engineer the light outcoupling in semiconducting TMDCs by modulating their dielectric surroundings. We show that by modulating the thicknesses of underlying substrates and capping layers, the interference caused by substrate can significantly enhance the light absorption and emission of WSe2, resulting in a ?11 times increase in Raman signal and a ?30 times increase in the photoluminescence (PL) intensity of WSe2. On the basis of the interference model, we also propose a strategy to control the photonic and optoelectronic properties of thin-layer WSe2. This work demonstrates the utilization of outcoupling engineering in 2D materials and offers a new route toward the realization of novel optoelectronic devices, such as 2D LEDs and solar cells. PMID:25602462

  5. Geometry in the Computer Age.

    ERIC Educational Resources Information Center

    Scott, Paul

    1988-01-01

    Discusses the use of computer graphics in the teaching of geometry. Describes five types of geometry: Euclidean geometry, transformation geometry, coordinate geometry, three-dimensional geometry, and geometry of convex sets. (YP)

  6. Crossing the c=1 barrier in 2D Lorentzian quantum gravity

    NASA Astrophysics Data System (ADS)

    Ambjrn, J.; Anagnostopoulos, K.; Loll, R.

    2000-02-01

    In an extension of earlier work we investigate the behavior of two-dimensional (2D) Lorentzian quantum gravity under coupling to a conformal field theory with c>1. This is done by analyzing numerically a system of eight Ising models (corresponding to c=4) coupled to dynamically triangulated Lorentzian geometries. It is known that a single Ising model couples weakly to Lorentzian quantum gravity, in the sense that the Hausdorff dimension of the ensemble of two-geometries is two (as in pure Lorentzian quantum gravity) and the matter behavior is governed by the Onsager exponents. By increasing the amount of matter to eight Ising models, we find that the geometry of the combined system has undergone a phase transition. The new phase is characterized by an anomalous scaling of spatial length relative to proper time at large distances, and as a consequence the Hausdorff dimension is now three. In spite of this qualitative change in the geometric sector, and a very strong interaction between matter and geometry, the critical exponents of the Ising model retain their Onsager values. This provides evidence for the conjecture that the KPZ values of the critical exponents in 2D Euclidean quantum gravity are entirely due to the presence of baby universes. Lastly, we summarize the lessons learned so far from 2D Lorentzian quantum gravity.

  7. Casimir effects in systems containing 2D layers such as graphene and 2D electron gases.

    PubMed

    Sernelius, B E

    2015-06-01

    We present a variety of methods to derive the Casimir interaction in planar systems containing 2D layers. Examples where this can be of use is graphene, graphene-like layers and 2D electron gases. We present results for two free standing layers and for one layer above a substrate. The results can easily be extended to systems with a larger number of layers. PMID:25965400

  8. Casimir effects in systems containing 2D layers such as graphene and 2D electron gases

    NASA Astrophysics Data System (ADS)

    Sernelius, B. E.

    2015-06-01

    We present a variety of methods to derive the Casimir interaction in planar systems containing 2D layers. Examples where this can be of use is graphene, graphene-like layers and 2D electron gases. We present results for two free standing layers and for one layer above a substrate. The results can easily be extended to systems with a larger number of layers.

  9. Rotating convection in elliptical geometries

    NASA Astrophysics Data System (ADS)

    Evonuk, M.

    2014-12-01

    Tidal interactions between hot jupiter planets and their host stars are likely to result in non-spherical geometries. These elliptical instabilities may have interesting effects on interior fluid convective patterns, which in turn influence the nature of the magnetic dynamo within these planets. Simulations of thermal convection in the 2D rotating equatorial plane are conducted to determine to first order the effect of ellipticity on convection for varying density contrasts with differing convective vigor and rotation rate. This survey is conducted in two dimensions in order to simulate a broad range of ellipticities and to maximize the parameter space explored.

  10. 2D numerical modelling of the gas temperature in a high-temperature high-power strontium atom laser excited by nanosecond pulsed longitudinal discharge in a He-SrBr2 mixture

    NASA Astrophysics Data System (ADS)

    Chernogorova, T. P.; Temelkov, K. A.; Koleva, N. K.; Vuchkov, N. K.

    2014-05-01

    Assuming axial symmetry and a uniform power input, a 2D model (r, z) is developed numerically for determination of the gas temperature in the case of a nanosecond pulsed longitudinal discharge in He-SrBr2 formed in a newly-designed large-volume high-temperature discharge tube with additional incompact ZrO2 insulation in the discharge-free zone, in order to find the optimal thermal mode for achievement of maximal output laser parameters. The model determines the gas temperature of a nanosecond pulsed longitudinal discharge in helium with small additives of strontium and bromine.

  11. Massive Fields and the 2-D String

    NASA Astrophysics Data System (ADS)

    Wilkins, Andy

    The first massive level of closed bosonic string theory is studied. Free-field equations are derived by imposing Weyl invariance on the worldsheet. A two-parameter solution to the equation of motion and constraints is found in two dimensions with a flat linear-dilaton background. One-to-one tachyon scattering is studied in this background. The results support Dhar, Mandal and Wadia's proposal that 2-D critical string theory corresponds to the c = 1 matrix model in which both sides of the Fermi sea are excited.

  12. 2-1/2-D electromagnetic modeling of nodular defects in high-power multilayer optical coatings

    SciTech Connect

    Molau, N.E.; Brand, H.R.; Kozlowski, M.R.; Shang, C.C.

    1996-07-01

    Advances in the design and production of high damage threshold optical coatings for use in mirrors and polarizers have been driven by the design requirements of high-power laser systems such as the proposed 1.8-MJ National Ignition Facility (NIF) and the prototype 12- kJ Beamlet laser system. The present design of the NIF will include 192 polarizers and more than 1100 mirrors. Currently, the material system of choice for high-power multilayer optical coatings with high damage threshold applications near 1.06 {mu}m are e-beam deposited HfO{sub 2}/Si0{sub 2} coatings. However, the optical performance and laser damage thresholds of these coatings are limited by micron-scale defects and insufficient control over layer thickness. In this report, we will discuss the results of our 2-1/2-D finite-element time- domain (FDTD) EM modeling effort for rotationally-symmetric nodular defects in multilayer dielectric HR coatings. We have added a new diagnostic to the 2-1/2-D FDTD EM code, AMOS, that enables us to calculate the peak steady-state electric fields throughout a 2-D planar region containing a 2-D r-z cross-section of the axisymmetric nodular defect and surrounding multilayer dielectric stack. We have also generated a series of design curves to identify the range of loss tangents for Si0{sub 2} and HfO{sub 2} consistent with the experimentally determined power loss of the HR coatings. In addition, we have developed several methods to provide coupling between the EM results and the thermal-mechanical simulation effort.

  13. WFR-2D: an analytical model for PWAS-generated 2D ultrasonic guided wave propagation

    NASA Astrophysics Data System (ADS)

    Shen, Yanfeng; Giurgiutiu, Victor

    2014-03-01

    This paper presents WaveFormRevealer 2-D (WFR-2D), an analytical predictive tool for the simulation of 2-D ultrasonic guided wave propagation and interaction with damage. The design of structural health monitoring (SHM) systems and self-aware smart structures requires the exploration of a wide range of parameters to achieve best detection and quantification of certain types of damage. Such need for parameter exploration on sensor dimension, location, guided wave characteristics (mode type, frequency, wavelength, etc.) can be best satisfied with analytical models which are fast and efficient. The analytical model was constructed based on the exact 2-D Lamb wave solution using Bessel and Hankel functions. Damage effects were inserted in the model by considering the damage as a secondary wave source with complex-valued directivity scattering coefficients containing both amplitude and phase information from wave-damage interaction. The analytical procedure was coded with MATLAB, and a predictive simulation tool called WaveFormRevealer 2-D was developed. The wave-damage interaction coefficients (WDICs) were extracted from harmonic analysis of local finite element model (FEM) with artificial non-reflective boundaries (NRB). The WFR-2D analytical simulation results were compared and verified with full scale multiphysics finite element models and experiments with scanning laser vibrometer. First, Lamb wave propagation in a pristine aluminum plate was simulated with WFR-2D, compared with finite element results, and verified by experiments. Then, an inhomogeneity was machined into the plate to represent damage. Analytical modeling was carried out, and verified by finite element simulation and experiments. This paper finishes with conclusions and suggestions for future work.

  14. 2-D or not 2-D, that is the question: A Northern California test

    SciTech Connect

    Mayeda, K; Malagnini, L; Phillips, W S; Walter, W R; Dreger, D

    2005-06-06

    Reliable estimates of the seismic source spectrum are necessary for accurate magnitude, yield, and energy estimation. In particular, how seismic radiated energy scales with increasing earthquake size has been the focus of recent debate within the community and has direct implications on earthquake source physics studies as well as hazard mitigation. The 1-D coda methodology of Mayeda et al. has provided the lowest variance estimate of the source spectrum when compared against traditional approaches that use direct S-waves, thus making it ideal for networks that have sparse station distribution. The 1-D coda methodology has been mostly confined to regions of approximately uniform complexity. For larger, more geophysically complicated regions, 2-D path corrections may be required. The complicated tectonics of the northern California region coupled with high quality broadband seismic data provides for an ideal ''apples-to-apples'' test of 1-D and 2-D path assumptions on direct waves and their coda. Using the same station and event distribution, we compared 1-D and 2-D path corrections and observed the following results: (1) 1-D coda results reduced the amplitude variance relative to direct S-waves by roughly a factor of 8 (800%); (2) Applying a 2-D correction to the coda resulted in up to 40% variance reduction from the 1-D coda results; (3) 2-D direct S-wave results, though better than 1-D direct waves, were significantly worse than the 1-D coda. We found that coda-based moment-rate source spectra derived from the 2-D approach were essentially identical to those from the 1-D approach for frequencies less than {approx}0.7-Hz, however for the high frequencies (0.7{le} f {le} 8.0-Hz), the 2-D approach resulted in inter-station scatter that was generally 10-30% smaller. For complex regions where data are plentiful, a 2-D approach can significantly improve upon the simple 1-D assumption. In regions where only 1-D coda correction is available it is still preferable over 2-D direct wave-based measures.

  15. Azimuth multipoles versus minimum-bias jets in 2D angular correlations on η and ϕ

    NASA Astrophysics Data System (ADS)

    Trainor, Thomas A.

    2013-05-01

    Angular correlations measured in p-p and heavy ion collisions at the Relativistic Heavy Ion Collider (RHIC) include a same-side (SS) 2D peak. In peripheral A-A and p-p collisions the SS peak properties are consistent with predicted minimum-bias jet correlations. However, in more-central Au-Au collisions the SS peak becomes elongated on pseudorapidity η. Arguments have been proposed to explain the SS peak η elongation in terms of possibly fluctuating initial-state geometry multipoles coupled with radial flow to produce final-state momentum-space multipoles. Such arguments are based on Fourier decomposition of 2D angular correlations projected onto 1D azimuth. In this analysis we show that measured correlation structure on η (large curvatures) establishes a clear distinction between the SS 2D (jet) peak and 1D multipoles. Measured 2D peak systematics can predict inferred 1D Fourier amplitudes interpreted as ‘higher harmonic flows’. However, 1D Fourier amplitudes alone cannot describe 2D angular correlations. The SS 2D peak remains a unique structure that can be interpreted in terms of parton scattering and fragmentation in all cases.

  16. Slab detachment - 3-D versus 1-D & 2-D

    NASA Astrophysics Data System (ADS)

    von Tscharner, Marina; Duretz, Thibault; Schmalholz, Stefan

    2014-05-01

    Slab detachment is a geodynamic process that may affect subduction zones on Earth. This process is characterized by the detachment of a subducting slab fragment and results in a dramatic decrease of the slab pull force magnitude. As a result, slab detachment has many potential consequences for the dynamics of convergent zones such as orogens. We study three-dimensional (3-D) lateral propagation of slab detachment due to a laterally varying initial slab length with numerical simulations based on the finite element method (FEM). The slab detachment is simulatedby buoyancy-driven necking in a layer of power-law fluid embedded in a linear viscous medium. Our 3-D FEM code combines a numerical contour-line technique and a deformable Lagrangian mesh with re-meshing. With this combined method it is possible to accurately follow the initial material contours with the FEM mesh and to accurately resolve the geometrical instabilities. We are able to follow the material contour and therefore, to study the accurate slab geometry at any time. We provide a detailed description of the evolution of the slab morphology and evaluate the rates of lateral propagation of slab detachment.We compare the 3D results with the 1-D analytical solution for slab detachment of Schmalholz (2011). We further compare the 3-D results with 2-D numerical simulationsthat can be described reasonably well with the 1-D analytical solution. The fundamental differences between the3-D and 2-D slab detachment are identified and quantified. REFERENCES Schmalholz, S., 2011, A simple analytical solution for slab detachment, Earth and Planetary Science Letters 304, 45-54

  17. Bandgaps and directional propagation of elastic waves in 2D square zigzag lattice structures

    NASA Astrophysics Data System (ADS)

    Wang, Yan-Feng; Wang, Yue-Sheng; Zhang, Chuanzeng

    2014-12-01

    In this paper we propose various types of two-dimensional (2D) square zigzag lattice structures, and we study their bandgaps and directional propagation of elastic waves. The band structures and the transmission spectra of the systems are calculated by using the finite element method. The effects of the geometry parameters of the 2D-zigzag lattices on the bandgaps are investigated and discussed. The mechanism of the bandgap generation is analyzed by studying the vibration modes at the bandgap edges. Multiple wide complete bandgaps are found in a wide porosity range owing to the separation of the degeneracy by introducing bending arms. The bandgaps are sensitive to the geometry parameters of the systems. The deformed displacement fields of the transient response of finite structures subjected to time-harmonic loads are presented to show the directional wave propagation. The research in this paper is relevant to the practical design of cellular structures with enhanced vibro-acoustics performance.

  18. 2-D Finite Element Heat Conduction

    Energy Science and Technology Software Center (ESTSC)

    1989-10-30

    AYER is a finite element program which implicitly solves the general two-dimensional equation of thermal conduction for plane or axisymmetric bodies. AYER takes into account the effects of time (transient problems), in-plane anisotropic thermal conductivity, a three-dimensional velocity distribution, and interface thermal contact resistance. Geometry and material distributions are arbitrary, and input is via subroutines provided by the user. As a result, boundary conditions, material properties, velocity distributions, and internal power generation may be mademore » functions of, e.g., time, temperature, location, and heat flux.« less

  19. 2D Electrostatic Actuation of Microshutter Arrays

    NASA Technical Reports Server (NTRS)

    Burns, Devin E.; Oh, Lance H.; Li, Mary J.; Jones, Justin S.; Kelly, Daniel P.; Zheng, Yun; Kutyrev, Alexander S.; Moseley, Samuel H.

    2015-01-01

    An electrostatically actuated microshutter array consisting of rotational microshutters (shutters that rotate about a torsion bar) were designed and fabricated through the use of models and experiments. Design iterations focused on minimizing the torsional stiffness of the microshutters, while maintaining their structural integrity. Mechanical and electromechanical test systems were constructed to measure the static and dynamic behavior of the microshutters. The torsional stiffness was reduced by a factor of four over initial designs without sacrificing durability. Analysis of the resonant behavior of the microshutter arrays demonstrates that the first resonant mode is a torsional mode occurring around 3000 Hz. At low vacuum pressures, this resonant mode can be used to significantly reduce the drive voltage necessary for actuation requiring as little as 25V. 2D electrostatic latching and addressing was demonstrated using both a resonant and pulsed addressing scheme.

  20. Canard configured aircraft with 2-D nozzle

    NASA Technical Reports Server (NTRS)

    Child, R. D.; Henderson, W. P.

    1978-01-01

    A closely-coupled canard fighter with vectorable two-dimensional nozzle was designed for enhanced transonic maneuvering. The HiMAT maneuver goal of a sustained 8g turn at a free-stream Mach number of 0.9 and 30,000 feet was the primary design consideration. The aerodynamic design process was initiated with a linear theory optimization minimizing the zero percent suction drag including jet effects and refined with three-dimensional nonlinear potential flow techniques. Allowances were made for mutual interference and viscous effects. The design process to arrive at the resultant configuration is described, and the design of a powered 2-D nozzle model to be tested in the LRC 16-foot Propulsion Wind Tunnel is shown.

  1. 2D quantum gravity from quantum entanglement.

    PubMed

    Gliozzi, F

    2011-01-21

    In quantum systems with many degrees of freedom the replica method is a useful tool to study the entanglement of arbitrary spatial regions. We apply it in a way that allows them to backreact. As a consequence, they become dynamical subsystems whose position, form, and extension are determined by their interaction with the whole system. We analyze, in particular, quantum spin chains described at criticality by a conformal field theory. Its coupling to the Gibbs' ensemble of all possible subsystems is relevant and drives the system into a new fixed point which is argued to be that of the 2D quantum gravity coupled to this system. Numerical experiments on the critical Ising model show that the new critical exponents agree with those predicted by the formula of Knizhnik, Polyakov, and Zamolodchikov. PMID:21405265

  2. 3D reconstruction of a carotid bifurcation from 2D transversal ultrasound images.

    PubMed

    Yeom, Eunseop; Nam, Kweon-Ho; Jin, Changzhu; Paeng, Dong-Guk; Lee, Sang-Joon

    2014-12-01

    Visualizing and analyzing the morphological structure of carotid bifurcations are important for understanding the etiology of carotid atherosclerosis, which is a major cause of stroke and transient ischemic attack. For delineation of vasculatures in the carotid artery, ultrasound examinations have been widely employed because of a noninvasive procedure without ionizing radiation. However, conventional 2D ultrasound imaging has technical limitations in observing the complicated 3D shapes and asymmetric vasodilation of bifurcations. This study aims to propose image-processing techniques for better 3D reconstruction of a carotid bifurcation in a rat by using 2D cross-sectional ultrasound images. A high-resolution ultrasound imaging system with a probe centered at 40MHz was employed to obtain 2D transversal images. The lumen boundaries in each transverse ultrasound image were detected by using three different techniques; an ellipse-fitting, a correlation mapping to visualize the decorrelation of blood flow, and the ellipse-fitting on the correlation map. When the results are compared, the third technique provides relatively good boundary extraction. The incomplete boundaries of arterial lumen caused by acoustic artifacts are somewhat resolved by adopting the correlation mapping and the distortion in the boundary detection near the bifurcation apex was largely reduced by using the ellipse-fitting technique. The 3D lumen geometry of a carotid artery was obtained by volumetric rendering of several 2D slices. For the 3D vasodilatation of the carotid bifurcation, lumen geometries at the contraction and expansion states were simultaneously depicted at various view angles. The present 3D reconstruction methods would be useful for efficient extraction and construction of the 3D lumen geometries of carotid bifurcations from 2D ultrasound images. PMID:24965564

  3. Interrogating Fiber Formation Kinetics with Automated 2D-IR Spectroscopy

    NASA Astrophysics Data System (ADS)

    Strasfeld, David B.; Ling, Yun L.; Shim, Sang-Hee; Zanni, Martin T.

    A new method for collecting 2D-IR spectra that utilizes both a pump-probe beam geometry and a mid-IR pulse shaper is used to gain a fuller understanding of fiber formation in the human islet amyloid polypeptide (hIAPP). We extract structural kinetics in order to better understand aggregation in hIAPP, the protein component of the amyloid fibers found to inhibit insulin production in type II diabetes patients.

  4. Takes Electric or Magnetic field data through Inversion process a 2D Distributon

    SciTech Connect

    2008-05-01

    Program images 2D distributions in electrical conductivity for geophysical applications. The program can treat surface based and cross well measurement geometries, including inductive and grounded source antennas in the quasi-static limit. The algorithm using Krylov iterative methods to solve for the predicted data and model sensitivities. The model update is achieved using a Gauss-newton optimization process for stability. A new line search capability is now included in the algorithm to insure global convergence of the inversion iteration.

  5. Fluctuating Pressure Data from 2-D Nozzle Cold Flow Tests (Dual Bell)

    NASA Technical Reports Server (NTRS)

    Nesman, Tomas E.

    2001-01-01

    Rocket engines nozzle performance changes as a vehicle climbs through the atmosphere. An altitude compensating nozzle, ACN, is intended to improve on a fixed geometry bell nozzle that performs at optimum at only one trajectory point. In addition to nozzle performance, nozzle transient loads are an important consideration. Any nozzle experiences large transient toads when shocks pass through the nozzle at start and shutdown. Additional transient toads will occur at transitional flow conditions. The objectives of cold flow nozzle testing at MSFC are CFD benchmark / calibration and Unsteady flow / sideloads. Initial testing performed with 2-D inserts to 14" transonic wind tunnel. Recent review of 2-D data in preparation for nozzle test facility 3-D testing. This presentation shows fluctuating pressure data and some observations from 2-D dual-bell nozzle cold flow tests.

  6. Boundary three-point function on AdS2 D-branes

    NASA Astrophysics Data System (ADS)

    Ribault, Sylvain

    2008-01-01

    Using the H3+-Liouville relation, I explicitly compute the boundary three-point function on AdS2 D-branes in H3+, and check that it exhibits the expected symmetry properties and has the correct geometrical limit. I then find a simple relation between this boundary three-point function and certain fusing matrix elements, which suggests a formal correspondence between the AdS2 D-branes and discrete representations of the symmetry group. Concluding speculations deal with the fuzzy geometry of AdS2 D-branes, strings in the Minkowskian AdS3, and the hypothetical existence of new D-branes in H3+.

  7. 2D/3D velocity model for the high resolution 2D and 3D seismic data from the CO2SINK Ketzin Project

    NASA Astrophysics Data System (ADS)

    Ivanova, A.; Asch, G.; Lueth, S.; Goetz, J.

    2009-04-01

    Seismic traveltime inversion, traveltime tomography and seismic reflection techniques have been applied for two dimensional (2D) and three dimensional (3D) data acquired in conjunction with characterization and monitoring aspects at a carbon dioxide (CO2) geological storage site at Ketzin, Germany (the CO2SINK project) (S.Yordkayhun, 2008). A seismic source comparison from the 2D pilot study regarding acquisition parameters have been tested at the side has shown the weight drop source is suitable concerning the signal penetration, frequency content of the data and minimizing time and costs for the 3D data acquisition. For the Ketzin seismic data, the ability to obtain an accurate 2D/3D interval velocity model is limited by the acquisition geometry, source-generated noise and time shifts due to the near-surface effects producing severe distortions in the data. Moreover, these time shifts are comparable to the dominant periods of the reflections and to the size of structures to be imaged. Therefore, a combination of seismic refraction and state-of-the-art processing techniques, including careful static corrections and more accurate velocity analysis, has resulted in key improvements of the images and has allowed new information about the 2D/3D interval velocities. The results from these studies together with borehole information, hydrogeologic models and seismic modeling will be combined into an integrated 2D/3D velocity model. After that a careful 2D/3D depth migration is to be provided. It can be used as a database for the future monitoring program at the site.

  8. A new inversion method for (T2, D) 2D NMR logging and fluid typing

    NASA Astrophysics Data System (ADS)

    Tan, Maojin; Zou, Youlong; Zhou, Cancan

    2013-02-01

    One-dimensional nuclear magnetic resonance (1D NMR) logging technology has some significant limitations in fluid typing. However, not only can two-dimensional nuclear magnetic resonance (2D NMR) provide some accurate porosity parameters, but it can also identify fluids more accurately than 1D NMR. In this paper, based on the relaxation mechanism of (T2, D) 2D NMR in a gradient magnetic field, a hybrid inversion method that combines least-squares-based QR decomposition (LSQR) and truncated singular value decomposition (TSVD) is examined in the 2D NMR inversion of various fluid models. The forward modeling and inversion tests are performed in detail with different acquisition parameters, such as magnetic field gradients (G) and echo spacing (TE) groups. The simulated results are discussed and described in detail, the influence of the above-mentioned observation parameters on the inversion accuracy is investigated and analyzed, and the observation parameters in multi-TE activation are optimized. Furthermore, the hybrid inversion can be applied to quantitatively determine the fluid saturation. To study the effects of noise level on the hybrid method and inversion results, the numerical simulation experiments are performed using different signal-to-noise-ratios (SNRs), and the effect of different SNRs on fluid typing using three fluid models are discussed and analyzed in detail.

  9. Dynamic Geometry on WWW.

    ERIC Educational Resources Information Center

    Kuntz, Gilles

    The first section of this paper on World Wide Web applications related to dynamic geometry addresses dynamic geometry and teaching, including the relationship between dynamic geometry and direct manipulation, key features of dynamic geometry environments, the importance of direct engagement of the learner using construction software for

  10. Geometry in Medias Res

    ERIC Educational Resources Information Center

    Cukier, Mimi; Asdourian, Tony; Thakker, Anand

    2012-01-01

    Geometry provides a natural window into what it is like to do mathematics. In the world of geometry, playful experimentation is often more fruitful than following a procedure, and logic plus a few axioms can open new worlds. Nonetheless, teaching a geometry course in a way that combines both rigor and play can be difficult. Many geometry courses

  11. 2D Fluidization of Nanomaterials by Biomimetic Membranes

    NASA Astrophysics Data System (ADS)

    Kelly, Kathleen; Forstner, Martin

    2012-02-01

    The last decade has seen much progress in the synthesis and manufacturing of a large variety of nanometer sized particles of different materials, geometries and properties. If they can be assembled into larger structures, these manmade nano-objects are posed to be the ``atoms'' and ``molecules'' of new materials. In order to facilitate their dynamic rearrangements we have developed a method that uses material specific binding peptides to anchor nano-objects to lipids in supported bilayers (SLB). In this study we use single walled carbon nanotubes (CNT) with a mean length of 1 micrometer as model of a potential nano-building block. By fluorescently labeling CNTs we are able to use video-microscopy to investigate the dynamic behavior of membrane anchored CNTs. We show that the 2D fluidity of the lipid membrane can be successfully templated on the CNTs and that they stay laterally mobile while being confined to a plane. Furthermore, the dependence of CNT mobility on specific binding stoichiometries is discussed.

  12. 2D-fractal based algorithms for nanoparticles characterization

    NASA Astrophysics Data System (ADS)

    Bonifazi, Giuseppe; Serranti, Silvia

    2014-02-01

    Fractal geometry concerns the study of non-Euclidean geometrical figures generated by a recursive sequence of mathematical operations. The proposed 2D-fractal approach was applied to characterise the image structure and texture generated by fine and ultra-fine particles when impacting on a flat surface. The work was developed with reference to particles usually produced by ultra-fine milling addressed to generate nano-particles population. In order to generate different particle populations to utilize in the study, specific milling actions have been thus performed adopting different milling actions and utilising different materials, both in terms of original size class distribution and chemical-physical attributes. The aim of the work was to develop a simple, reliable and low cost analytical set of procedures with the ability to establish correlations between particles detected by fractal characteristics and their milled-induced-properties (i.e. size class distribution, shape, surface properties, etc.). Such logic should constitute the core of a control engine addressed to realize a full monitoring of the milling process as well as to establish correlation between operative parameters, fed and resulting products characteristics.

  13. Defect formation and coarsening in hexagonal 2D curved crystals.

    PubMed

    Garca, Nicols A; Pezzutti, Aldo D; Register, Richard A; Vega, Daniel A; Gmez, Leopoldo R

    2015-02-01

    In this work we study the processes of defect formation and coarsening of two-dimensional (2D) curved crystal structures. These processes are found to strongly deviate from their counterparts in flat systems. In curved backgrounds the process of defect formation is deeply affected by the curvature, and at the onset of a phase transition the early density of defects becomes highly inhomogeneous. We observe that even a single growing crystal can produce varying densities of defects depending on its initial position and local orientation with regard to the substrate. This process is completely different from flat space, where grain boundaries are formed due to the impingement of different propagating crystals. Quenching the liquid into the crystal phase leads to the formation of a curved polycrystalline structure, characterized by complex arrays of defects. During annealing, mechanisms of geodesic curvature-driven grain boundary motion and defect annihilation lead to increasing crystalline order. Linear arrays of defects diffuse to regions of high curvature, where they are absorbed by disclinations. At the early stage of coarsening the density of dislocations is insensitive to the geometry while the population of isolated disclinations is deeply affected by curvature. The regions with high curvature act as traps for the diffusion of different structures of defects, including disclinations and domain walls. PMID:25491780

  14. Asymptotic Estimates for 2-D Sloshing Modes: Theory and Experiment

    NASA Astrophysics Data System (ADS)

    Davis, Anthony; Weidman, Patrick D.

    1999-11-01

    A classic problem in surface gravity waves is that of 2-D sloshing modes in a channel of arbitary shape. Exact solutions are known for vertical walls and for triangular containers with ?, the angle subtended at the free surface, equal to 45^circ or 30^circ. At higher frequencies, the wave motion is confined near the free surface and only the shape of the container at the corners is important. The conjectured asymptotic form 1/2[n+1/2(1-?)], ?=frac?2? for the dimensionless frequency parameter can be anticipated by simple use of sloping beach potentials. The next corrrection for straight-sided containers is exponentially small in the exact solutions (?=1,2,3), O(1/n) for the infinite dock with gap (?=?) and is now shown to be O(n-2?) in general. Modifications for asymmetric containers are included. Experiments designed to verify the theory have been successfully completed for odd values of n up to 13. Five geometries, including angles 60^circ and 135^circ for which ? is not an integer, were used and surface tension in the fluid minimized. The measured data were adjusted to account for the remaining surface tension and good agreement with the theory obtained.

  15. Duality Between Spin Networks and the 2D Ising Model

    NASA Astrophysics Data System (ADS)

    Bonzom, Valentin; Costantino, Francesco; Livine, Etera R.

    2016-01-01

    The goal of this paper is to exhibit a deep relation between the partition function of the Ising model on a planar trivalent graph and the generating series of the spin network evaluations on the same graph. We provide respectively a fermionic and a bosonic Gaussian integral formulation for each of these functions and we show that they are the inverse of each other (up to some explicit constants) by exhibiting a supersymmetry relating the two formulations. We investigate three aspects and applications of this duality. First, we propose higher order supersymmetric theories that couple the geometry of the spin networks to the Ising model and for which supersymmetric localization still holds. Secondly, after interpreting the generating function of spin network evaluations as the projection of a coherent state of loop quantum gravity onto the flat connection state, we find the probability distribution induced by that coherent state on the edge spins and study its stationary phase approximation. It is found that the stationary points correspond to the critical values of the couplings of the 2D Ising model, at least for isoradial graphs. Third, we analyze the mapping of the correlations of the Ising model to spin network observables, and describe the phase transition on those observables on the hexagonal lattice. This opens the door to many new possibilities, especially for the study of the coarse-graining and continuum limit of spin networks in the context of quantum gravity.

  16. 2D Depiction of Fragment Hierarchies

    PubMed Central

    2009-01-01

    Drug discovery projects often involve organizing compounds in the form of a hierarchical tree, where each node is a substructure fragment shared by all of its descendent nodes. A method is described for producing 2D depiction layout coordinates for each of the nodes in such a tree, ensuring that common fragments within molecular structures are drawn in an identical way, and arranged with a consistent orientation. This is achieved by first deriving a common numbering scheme for common fragments, then using this scheme to redepict each of the molecules, one fragment at a time, so that common fragments have common depiction motifs. Once complete, the distinct root branches can be overlaid onto each other, after which all of the fragments and whole molecules have a common layout and orientation. Several methods are described for preparing visual representations of molecular structure hierarchies alongside activity information. Combining high level tree display and structure depiction showing common features readily facilitates insight into structure?activity relationships. PMID:20038186

  17. 2D Radiative Processes Near Cloud Edges

    NASA Technical Reports Server (NTRS)

    Varnai, T.

    2012-01-01

    Because of the importance and complexity of dynamical, microphysical, and radiative processes taking place near cloud edges, the transition zone between clouds and cloud free air has been the subject of intense research both in the ASR program and in the wider community. One challenge in this research is that the one-dimensional (1D) radiative models widely used in both remote sensing and dynamical simulations become less accurate near cloud edges: The large horizontal gradients in particle concentrations imply that accurate radiative calculations need to consider multi-dimensional radiative interactions among areas that have widely different optical properties. This study examines the way the importance of multidimensional shortwave radiative interactions changes as we approach cloud edges. For this, the study relies on radiative simulations performed for a multiyear dataset of clouds observed over the NSA, SGP, and TWP sites. This dataset is based on Microbase cloud profiles as well as wind measurements and ARM cloud classification products. The study analyzes the way the difference between 1D and 2D simulation results increases near cloud edges. It considers both monochromatic radiances and broadband radiative heating, and it also examines the influence of factors such as cloud type and height, and solar elevation. The results provide insights into the workings of radiative processes and may help better interpret radiance measurements and better estimate the radiative impacts of this critical region.

  18. 2D Turbulence with Complicated Boundaries

    NASA Astrophysics Data System (ADS)

    Roullet, G.; McWilliams, J. C.

    2014-12-01

    We examine the consequences of lateral viscous boundary layers on the 2D turbulence that arises in domains with complicated boundaries (headlands, bays etc). The study is carried out numerically with LES. The numerics are carefully designed to ensure all global conservation laws, proper boundary conditions and a minimal range of dissipation scales. The turbulence dramatically differs from the classical bi-periodic case. Boundary layer separations lead to creation of many small vortices and act as a continuing energy source exciting the inverse cascade of energy throughout the domain. The detachments are very intermittent in time. In free decay, the final state depends on the effective numerical resolution: laminar with a single dominant vortex for low Re and turbulent with many vortices for large enough Re. After very long time, the turbulent end-state exhibits a striking tendency for the emergence of shielded vortices which then interact almost elastically. In the forced case, the boundary layers allow the turbulence to reach a statistical steady state without any artificial hypo-viscosity or other large-scale dissipation. Implications are discussed for the oceanic mesoscale and submesoscale turbulence.

  19. Learning Geometry through Dynamic Geometry Software

    ERIC Educational Resources Information Center

    Forsythe, Sue

    2007-01-01

    In this article, the author investigates effective teaching and learning of geometrical concepts using dynamic geometry software (DGS). Based from her students' reactions to her project, the author found that her students' understanding of the concepts was better than if they had learned geometry through paper-based tasks. However, mixing computer

  20. 2D discrete Fourier transform on sliding windows.

    PubMed

    Park, Chun-Su

    2015-03-01

    Discrete Fourier transform (DFT) is the most widely used method for determining the frequency spectra of digital signals. In this paper, a 2D sliding DFT (2D SDFT) algorithm is proposed for fast implementation of the DFT on 2D sliding windows. The proposed 2D SDFT algorithm directly computes the DFT bins of the current window using the precalculated bins of the previous window. Since the proposed algorithm is designed to accelerate the sliding transform process of a 2D input signal, it can be directly applied to computer vision and image processing applications. The theoretical analysis shows that the computational requirement of the proposed 2D SDFT algorithm is the lowest among existing 2D DFT algorithms. Moreover, the output of the 2D SDFT is mathematically equivalent to that of the traditional DFT at all pixel positions. PMID:25585421

  1. Determination of the Effective Properties of Thermal Spray Coatings Using 2D and 3D Models

    NASA Astrophysics Data System (ADS)

    Bobzin, K.; Kopp, N.; Warda, T.; te, M.

    2012-12-01

    Models, which are developed to determine the effective properties of thermal spray coatings, require the material properties of each constituent of the coating as well as the information about the spatial positions and the geometries of these constituents as input parameters. The complex microstructure of thermally sprayed Yttria-stabilized zirconia (YSZ) coatings consists of irregular voids which are distributed non-uniformly in the coating. It is a common practice in the literature to employ two-dimensional (2D) cross-sectional images of the coatings to derive the geometrical model of the microstructure and conduct the simulations in 2D. In the context of this study, contrary to the 2D approach, a new three-dimensional (3D) reconstruction approach has been developed to model the microstructure of thermally sprayed coatings in 3D. The effective properties of an YSZ coating have been calculated by means of asymptotic homogenization and virtual testing methods. The results of the models, which have been conducted in 2D and 3D, are compared with each other. Finally, the capabilities of these methods with respect to the modeling approach (in 3D and in 2D) are analyzed on the basis of reference measurements.

  2. MAZE96. Generates 2D Input for DYNA NIKE & TOPAZ

    SciTech Connect

    Sanford, L.; Hallquist, J.O.

    1992-02-24

    MAZE is an interactive program that serves as an input and two-dimensional mesh generator for DYNA2D, NIKE2D, TOPAZ2D, and CHEMICAL TOPAZ2D. MAZE also generates a basic template for ISLAND input. MAZE has been applied to the generation of input data to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.

  3. Generates 2D Input for DYNA NIKE & TOPAZ

    Energy Science and Technology Software Center (ESTSC)

    1996-07-15

    MAZE is an interactive program that serves as an input and two-dimensional mesh generator for DYNA2D, NIKE2D, TOPAZ2D, and CHEMICAL TOPAZ2D. MAZE also generates a basic template for ISLAND input. MAZE has been applied to the generation of input data to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.

  4. 2d PDE Linear Asymmetric Matrix Solver

    Energy Science and Technology Software Center (ESTSC)

    1983-10-01

    ILUCG2 (Incomplete LU factorized Conjugate Gradient algorithm for 2d problems) was developed to solve a linear asymmetric matrix system arising from a 9-point discretization of two-dimensional elliptic and parabolic partial differential equations found in plasma physics applications, such as plasma diffusion, equilibria, and phase space transport (Fokker-Planck equation) problems. These equations share the common feature of being stiff and requiring implicit solution techniques. When these parabolic or elliptic PDE''s are discretized with finite-difference or finite-elementmore » methods, the resulting matrix system is frequently of block-tridiagonal form. To use ILUCG2, the discretization of the two-dimensional partial differential equation and its boundary conditions must result in a block-tridiagonal supermatrix composed of elementary tridiagonal matrices. A generalization of the incomplete Cholesky conjugate gradient algorithm is used to solve the matrix equation. Loops are arranged to vectorize on the Cray1 with the CFT compiler, wherever possible. Recursive loops, which cannot be vectorized, are written for optimum scalar speed. For problems having a symmetric matrix ICCG2 should be used since it runs up to four times faster and uses approximately 30% less storage. Similar methods in three dimensions are available in ICCG3 and ILUCG3. A general source, containing extensions and macros, which must be processed by a pre-compiler to obtain the standard FORTRAN source, is provided along with the standard FORTRAN source because it is believed to be more readable. The pre-compiler is not included, but pre-compilation may be performed by a text editor as described in the UCRL-88746 Preprint.« less

  5. 2d PDE Linear Symmetric Matrix Solver

    Energy Science and Technology Software Center (ESTSC)

    1983-10-01

    ICCG2 (Incomplete Cholesky factorized Conjugate Gradient algorithm for 2d symmetric problems) was developed to solve a linear symmetric matrix system arising from a 9-point discretization of two-dimensional elliptic and parabolic partial differential equations found in plasma physics applications, such as resistive MHD, spatial diffusive transport, and phase space transport (Fokker-Planck equation) problems. These problems share the common feature of being stiff and requiring implicit solution techniques. When these parabolic or elliptic PDE''s are discretized withmore » finite-difference or finite-element methods,the resulting matrix system is frequently of block-tridiagonal form. To use ICCG2, the discretization of the two-dimensional partial differential equation and its boundary conditions must result in a block-tridiagonal supermatrix composed of elementary tridiagonal matrices. The incomplete Cholesky conjugate gradient algorithm is used to solve the linear symmetric matrix equation. Loops are arranged to vectorize on the Cray1 with the CFT compiler, wherever possible. Recursive loops, which cannot be vectorized, are written for optimum scalar speed. For matrices lacking symmetry, ILUCG2 should be used. Similar methods in three dimensions are available in ICCG3 and ILUCG3. A general source containing extensions and macros, which must be processed by a pre-compiler to obtain the standard FORTRAN source, is provided along with the standard FORTRAN source because it is believed to be more readable. The pre-compiler is not included, but pre-compilation may be performed by a text editor as described in the UCRL-88746 Preprint.« less

  6. 2D Geodynamic models of Microcontinent Formation

    NASA Astrophysics Data System (ADS)

    Tetreault, Joya; Buiter, Susanne

    2013-04-01

    Continental fragments (microcontinents and continental ribbons) are rifted-off blocks of relatively unthinned continental crust situated among the severely thinned crust of passive margins. The existence of these large crustal blocks would suggest that the passive margin containing them either underwent simultaneous differential rifting or multi-stage rifting in order to produce continental breakup and seafloor spreading in more than one location in the span of approximately 100 km. Also, because continental fragments do not occur on every passive margin, there must be something particular about the crust and/or lithosphere that led to the production of these features. Some proposed mechanisms for microcontinent and continental ribbon formation include (1) structural inheritance, (2) strain localization by serpentinized mantle or magmatic underplating, and (3) plume interaction with an active rift. Pre-existing weakness and inherited structural fabrics in typical continental crust from past tectonic events, such as varying rheology of accreted terranes and collisional suture zones, could be reactivated and serve as foci for deformation. The second theory is that strain is localized in certain regions by large amounts of weakened material that are either serpentinized mantle or mafic bodies underplating the thinned crust. Another possible process that could lead to continental fragment formation is magmatic influence of hot plume material that focuses in various regions, producing rifts in separate areas. The Jan Mayen and Seychelles microcontinents both have geological and plate reconstruction evidence to support the plume interaction theory. We use 2-D geodynamic experiments to assess the importance of structural inheritance, strain localization by regions of weakened mantle material, and contributions to rifting from plume material on producing crustal blocks surrounded by seafloor or thinned/hyperextended crust. Our preliminary results suggest that each of these three mechanisms, working alone, cannot produce concurrent or multi-stage differential thinning and continental break-up. We infer that multistage extension produced by a combination of these mechanisms could be necessary to produce microcontinents and continental ribbons.

  7. A 2D driven 3D vessel segmentation algorithm for 3D digital subtraction angiography data

    NASA Astrophysics Data System (ADS)

    Spiegel, M.; Redel, T.; Struffert, T.; Hornegger, J.; Doerfler, A.

    2011-10-01

    Cerebrovascular disease is among the leading causes of death in western industrial nations. 3D rotational angiography delivers indispensable information on vessel morphology and pathology. Physicians make use of this to analyze vessel geometry in detail, i.e. vessel diameters, location and size of aneurysms, to come up with a clinical decision. 3D segmentation is a crucial step in this pipeline. Although a lot of different methods are available nowadays, all of them lack a method to validate the results for the individual patient. Therefore, we propose a novel 2D digital subtraction angiography (DSA)-driven 3D vessel segmentation and validation framework. 2D DSA projections are clinically considered as gold standard when it comes to measurements of vessel diameter or the neck size of aneurysms. An ellipsoid vessel model is applied to deliver the initial 3D segmentation. To assess the accuracy of the 3D vessel segmentation, its forward projections are iteratively overlaid with the corresponding 2D DSA projections. Local vessel discrepancies are modeled by a global 2D/3D optimization function to adjust the 3D vessel segmentation toward the 2D vessel contours. Our framework has been evaluated on phantom data as well as on ten patient datasets. Three 2D DSA projections from varying viewing angles have been used for each dataset. The novel 2D driven 3D vessel segmentation approach shows superior results against state-of-the-art segmentations like region growing, i.e. an improvement of 7.2% points in precision and 5.8% points for the Dice coefficient. This method opens up future clinical applications requiring the greatest vessel accuracy, e.g. computational fluid dynamic modeling.

  8. 32 CFR 1639.4 - Exclusion from Class 2-D.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 6 2011-07-01 2011-07-01 false Exclusion from Class 2-D. 1639.4 Section 1639.4... REGISTRANTS PREPARING FOR THE MINISTRY 1639.4 Exclusion from Class 2-D. A registrant shall be excluded from Class 2-D when: (a) He fails to establish that the theological or divinity school is a recognized...

  9. 32 CFR 1639.4 - Exclusion from Class 2-D.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 32 National Defense 6 2010-07-01 2010-07-01 false Exclusion from Class 2-D. 1639.4 Section 1639.4... REGISTRANTS PREPARING FOR THE MINISTRY § 1639.4 Exclusion from Class 2-D. A registrant shall be excluded from Class 2-D when: (a) He fails to establish that the theological or divinity school is a recognized...

  10. A Planar Quantum Transistor Based on 2D-2D Tunneling in Double Quantum Well Heterostructures

    SciTech Connect

    Baca, W.E.; Blount, M.A.; Hafich, M.J.; Lyo, S.K.; Moon, J.S.; Reno, J.L.; Simmons, J.A.; Wendt, J.R.

    1998-12-14

    We report on our work on the double electron layer tunneling transistor (DELTT), based on the gate-control of two-dimensional -- two-dimensional (2D-2D) tunneling in a double quantum well heterostructure. While previous quantum transistors have typically required tiny laterally-defined features, by contrast the DELTT is entirely planar and can be reliably fabricated in large numbers. We use a novel epoxy-bond-and-stop-etch (EBASE) flip-chip process, whereby submicron gating on opposite sides of semiconductor epitaxial layers as thin as 0.24 microns can be achieved. Because both electron layers in the DELTT are 2D, the resonant tunneling features are unusually sharp, and can be easily modulated with one or more surface gates. We demonstrate DELTTs with peak-to-valley ratios in the source-drain I-V curve of order 20:1 below 1 K. Both the height and position of the resonant current peak can be controlled by gate voltage over a wide range. DELTTs with larger subband energy offsets ({approximately} 21 meV) exhibit characteristics that are nearly as good at 77 K, in good agreement with our theoretical calculations. Using these devices, we also demonstrate bistable memories operating at 77 K. Finally, we briefly discuss the prospects for room temperature operation, increases in gain, and high-speed.

  11. Flow past 2-D Hemispherical Rigid Canopies

    NASA Astrophysics Data System (ADS)

    Carnasciali, Maria-Isabel

    2013-11-01

    The flow past a 2-dimensional rigid hemispherical shape is investigated using PIV. Flow field measurements and images were generated with the use of a Thermoflow apparatus. Results of this study are compared to prior work (APS DFD 2012 Session E9.00003) which employed CFD to investigate the flow in the near wake of hemispherical parachutes. The various sized gaps/open areas were positioned at distinct locations. The work presented here is part of a larger research project to investigate flow fields in deceleration devices and parachutes. Understanding the pitch-stability of parachutes is essential for accurate design and implementation of these deceleration devices but they present a difficult system to analyze. The flexibility of the parachute fabric results in large variations in the parachute geometry leading to complex fluid-structure interactions. Such flow, combined with flow through gaps and open areas, has been postulated to shed alternating vortices causing pitching/oscillations of the canopy. The results presented provide some insight into which geometric features affect vortex shedding and may enable the redesign of the baseline parachute to minimize instabilities.

  12. Fosite: 2D advection problem solver

    NASA Astrophysics Data System (ADS)

    Illenseer, Tobias

    2012-04-01

    Fosite implements a method for the solution of hyperbolic conservation laws in curvilinear orthogonal coordinates. It is written in Fortran 90/95 integrating object-oriented (OO) design patterns, incorporating the flexibility of OO-programming into Fortran 90/95 while preserving the efficiency of the numerical computation. Although mainly intended for CFD simulations, Fosite's modular design allows its application to other advection problems as well. Unlike other two-dimensional implementations of finite volume methods, it accounts for local conservation of specific angular momentum. This feature turns the program into a perfect tool for astrophysical simulations where angular momentum transport is crucial. Angular momentum transport is not only implemented for standard coordinate systems with rotational symmetry (i.e. cylindrical, spherical) but also for a general set of orthogonal coordinate systems allowing the use of exotic curvilinear meshes (e.g. oblate-spheroidal). As in the case of the advection problem, this part of the software is also kept modular, therefore new geometries may be incorporated into the framework in a straightforward manner.

  13. Atoms dictating shape: The discrete geometry of conformal two-dimensional materials

    NASA Astrophysics Data System (ADS)

    Mehboudi, Mehrshad; Utt, Kainen; Terrones, Humberto; Pacheco, Alejandro; Harriss, Edmund; Barraza-Lopeez, Salvador

    2015-03-01

    The electronic, optical, thermal, mechanical and chemical behavior of two-dimensional (2D) materials depends on their shape (geometry). 2D materials are nets, with covalent bonds representing edges, and where atoms are vertices. Here we use a mathematical language to tell the shape of meshes and discuss the geometry of 2D materials of varied lattice structures, such as: hexagonal boron nitride, black phosphorus monolayers, low-buckled silicene, germanene, blue phosphorous, newly predicted III-V buckled 2D compounds such as AlP, conformal ``thicker'' layered materials such as 2D tin, ``single-layer'' transition metal dichalcogenides (MX2's), and a single-quintuple-layer of the topological insulator Bi2Se3. We characterize the geometry of each atom position without recourse to a continuum parametric model. The new framework generalizes the discrete geometry we introduced recently for graphene.

  14. 2D/3D Visual Tracker for Rover Mast

    NASA Technical Reports Server (NTRS)

    Bajracharya, Max; Madison, Richard W.; Nesnas, Issa A.; Bandari, Esfandiar; Kunz, Clayton; Deans, Matt; Bualat, Maria

    2006-01-01

    A visual-tracker computer program controls an articulated mast on a Mars rover to keep a designated feature (a target) in view while the rover drives toward the target, avoiding obstacles. Several prior visual-tracker programs have been tested on rover platforms; most require very small and well-estimated motion between consecutive image frames a requirement that is not realistic for a rover on rough terrain. The present visual-tracker program is designed to handle large image motions that lead to significant changes in feature geometry and photometry between frames. When a point is selected in one of the images acquired from stereoscopic cameras on the mast, a stereo triangulation algorithm computes a three-dimensional (3D) location for the target. As the rover moves, its body-mounted cameras feed images to a visual-odometry algorithm, which tracks two-dimensional (2D) corner features and computes their old and new 3D locations. The algorithm rejects points, the 3D motions of which are inconsistent with a rigid-world constraint, and then computes the apparent change in the rover pose (i.e., translation and rotation). The mast pan and tilt angles needed to keep the target centered in the field-of-view of the cameras (thereby minimizing the area over which the 2D-tracking algorithm must operate) are computed from the estimated change in the rover pose, the 3D position of the target feature, and a model of kinematics of the mast. If the motion between the consecutive frames is still large (i.e., 3D tracking was unsuccessful), an adaptive view-based matching technique is applied to the new image. This technique uses correlation-based template matching, in which a feature template is scaled by the ratio between the depth in the original template and the depth of pixels in the new image. This is repeated over the entire search window and the best correlation results indicate the appropriate match. The program could be a core for building application programs for systems that require coordination of vision and robotic motion.

  15. The 2D Rydberg series in Al I

    NASA Technical Reports Server (NTRS)

    Taylor, Peter R.; Bauschlicher, Charles W., Jr.; Langhoff, Stephen R.

    1987-01-01

    High quality ab initio electonic structure calculations were performed on the 2D Rydberg series in Al I. The configuration 3s3p2(2D) is shown to contribute substantially to the lowest four 2D Rydberg states. The same configuration also contributes substantially to a 2D state embedded in the ionization continuum. Computed oscillator strengths for the first six members of the 2D Rydberg transitions are given: these should be of substantially high accuracy than currently available values.

  16. The 2D Rydberg series in Al I

    NASA Technical Reports Server (NTRS)

    Taylor, Peter R.; Bauschlicher, Charles W., Jr.; Langhoff, Stephen R.

    1988-01-01

    High-quality ab initio electronic structure calculations have been performed on the 2D Rydberg series in Al I. The configuration 3s3p2(2D) is shown to contribute substantially to the lowest four 2D Rydberg states. The same configuration also contributes substantially to a 2D state embedded in the ionization continuum. Computed oscillator strengths for the first six members of the 2D Rydberg transitions are given: these should be of substantially higher accuracy than currently available values.

  17. A Note on a Tree-Based 2D Indexing

    NASA Astrophysics Data System (ADS)

    d'rek, Jan; Melichar, Bo?ivoj

    A new approach to the 2D pattern matching and specifically to 2D text indexing is proposed. We present the transformation of 2D structures into the form of a tree, preserving the context of each element of the structure. The tree can be linearised using the prefix notation into the form of a text (a string) and we do the pattern matching in this text. Over this representation pushdown automata indexing the 2D text are constructed. They allow to search for 2D prefixes, suffixes, or factors of the 2D text in time proportional to the size of the representation of a 2D pattern. This result achieves the properties analogous to the results obtained in tree pattern matching and string indexing.

  18. CYP2D7 Sequence Variation Interferes with TaqMan CYP2D6*15 and *35 Genotyping

    PubMed Central

    Riffel, Amanda K.; Dehghani, Mehdi; Hartshorne, Toinette; Floyd, Kristen C.; Leeder, J. Steven; Rosenblatt, Kevin P.; Gaedigk, Andrea

    2016-01-01

    TaqMan™ genotyping assays are widely used to genotype CYP2D6, which encodes a major drug metabolizing enzyme. Assay design for CYP2D6 can be challenging owing to the presence of two pseudogenes, CYP2D7 and CYP2D8, structural and copy number variation and numerous single nucleotide polymorphisms (SNPs) some of which reflect the wild-type sequence of the CYP2D7 pseudogene. The aim of this study was to identify the mechanism causing false-positive CYP2D6*15 calls and remediate those by redesigning and validating alternative TaqMan genotype assays. Among 13,866 DNA samples genotyped by the CompanionDx® lab on the OpenArray platform, 70 samples were identified as heterozygotes for 137Tins, the key SNP of CYP2D6*15. However, only 15 samples were confirmed when tested with the Luminex xTAG CYP2D6 Kit and sequencing of CYP2D6-specific long range (XL)-PCR products. Genotype and gene resequencing of CYP2D6 and CYP2D7-specific XL-PCR products revealed a CC>GT dinucleotide SNP in exon 1 of CYP2D7 that reverts the sequence to CYP2D6 and allows a TaqMan assay PCR primer to bind. Because CYP2D7 also carries a Tins, a false-positive mutation signal is generated. This CYP2D7 SNP was also responsible for generating false-positive signals for rs769258 (CYP2D6*35) which is also located in exon 1. Although alternative CYP2D6*15 and *35 assays resolved the issue, we discovered a novel CYP2D6*15 subvariant in one sample that carries additional SNPs preventing detection with the alternate assay. The frequency of CYP2D6*15 was 0.1% in this ethnically diverse U.S. population sample. In addition, we also discovered linkage between the CYP2D7 CC>GT dinucleotide SNP and the 77G>A (rs28371696) SNP of CYP2D6*43. The frequency of this tentatively functional allele was 0.2%. Taken together, these findings emphasize that regardless of how careful genotyping assays are designed and evaluated before being commercially marketed, rare or unknown SNPs underneath primer and/or probe regions can impact the performance of PCR-based genotype assays, including TaqMan. Regardless of the test platform used, it is prudent to confirm rare allele calls by an independent method. PMID:26793106

  19. Geometry and Erdkinder.

    ERIC Educational Resources Information Center

    McDonald, Nathaniel J.

    2001-01-01

    Chronicles a teacher's first year teaching geometry at the Hershey Montessori Farm School in Huntsburg, Ohio. Instructional methods relied on Euclid primary readings and combined pure abstract logic with practical applications of geometry on the land. The course included geometry background imparted by Montessori elementary materials as well as…

  20. Numerical Simulation of Slinger Combustor Using 2-D Axisymmetric Computational Model

    NASA Astrophysics Data System (ADS)

    Lee, Semin; Park, Soo Hyung; Lee, Donghun

    2010-06-01

    Small-size turbojet engines have difficulties in maintaining the chemical reaction due to the limitation of chamber size. The combustion chamber is generally designed to improve the reaction efficiency by the generation of vortices in the chamber and to enhance air-fuel mixing characteristics. In the initial stage of designing the combustor, analysis of the 3-D full configuration is not practical due to the huge time consuming computation and grid generation followed by modifications of the geometry. In the present paper, an axisymmetric model maintaining geometric similarity and flow characteristic of 3-D configuration is developed. Based on numerical results from the full 3-D configuration, model reduction is achieved toward 2-D axisymmetric configuration. In the modeling process, the area and location of each hole in 3-D full configuration are considered reasonably and replaced to the 2-D axisymmetric model. By using the 2-D axisymmetric model, the factor that can affect the performance is investigated with the assumption that the flow is non-reacting and turbulent. Numerical results from the present model show a good agreement with numerical results from 3-D full configuration model such as existence of vortex pair in forward region and total pressure loss. By simplifying the complex 3-D model, computing time can be remarkably reduced and it makes easy to find effects of geometry modification.

  1. Simplified 2D Bidomain Model of Whole Heart Electrical Activity and ECG Generation

    NASA Astrophysics Data System (ADS)

    Sovilj, Siniša; Magjarević, Ratko; Abed, Amr Al; Lovell, Nigel H.; Dokos, Socrates

    2014-06-01

    The aim of this study was the development of a geometrically simple and highly computationally-efficient two dimensional (2D) biophysical model of whole heart electrical activity, incorporating spontaneous activation of the sinoatrial node (SAN), the specialized conduction system, and realistic surface ECG morphology computed on the torso. The FitzHugh-Nagumo (FHN) equations were incorporated into a bidomain finite element model of cardiac electrical activity, which was comprised of a simplified geometry of the whole heart with the blood cavities, the lungs and the torso as an extracellular volume conductor. To model the ECG, we placed four electrodes on the surface of the torso to simulate three Einthoven leads VI, VII and VIII from the standard 12-lead system. The 2D model was able to reconstruct ECG morphology on the torso from action potentials generated at various regions of the heart, including the sinoatrial node, atria, atrioventricular node, His bundle, bundle branches, Purkinje fibers, and ventricles. Our 2D cardiac model offers a good compromise between computational load and model complexity, and can be used as a first step towards three dimensional (3D) ECG models with more complex, precise and accurate geometry of anatomical structures, to investigate the effect of various cardiac electrophysiological parameters on ECG morphology.

  2. 3-D/2-D registration by integrating 2-D information in 3-D.

    PubMed

    Tomazevic, Dejan; Likar, Bostjan; Pernus, Franjo

    2006-01-01

    In image-guided therapy, high-quality preoperative images serve for planning and simulation, and intraoperatively as "background", onto which models of surgical instruments or radiation beams are projected. The link between a preoperative image and intraoperative physical space of the patient is established by image-to-patient registration. In this paper, we present a novel 3-D/2-D registration method. First, a 3-D image is reconstructed from a few 2-D X-ray images and next, the preoperative 3-D image is brought into the best possible spatial correspondence with the reconstructed image by optimizing a similarity measure (SM). Because the quality of the reconstructed image is generally low, we introduce a novel SM, which is able to cope with low image quality as well as with different imaging modalities. The novel 3-D/2-D registration method has been evaluated and compared to the gradient-based method (GBM) using standardized evaluation methodology and publicly available 3-D computed tomography (CT), 3-D rotational X-ray (3DRX), and magnetic resonance (MR) and 2-D X-ray images of two spine phantoms, for which gold standard registrations were known. For each of the 3DRX, CT, or MR images and each set of X-ray images, 1600 registrations were performed from starting positions, defined as the mean target registration error (mTRE), randomly generated and uniformly distributed in the interval of 0-20 mm around the gold standard. The capture range was defined as the distance from gold standard for which the final TRE was less than 2 mm in at least 95% of all cases. In terms of success rate, as the function of initial misalignment and capture range the proposed method outperformed the GBM. TREs of the novel method and the GBM were approximately the same. For the registration of 3DRX and CT images to X-ray images as few as 2-3 X-ray views were sufficient to obtain approximately 0.4 mm TREs, 7-9 mm capture range, and 80%-90% of successful registrations. To obtain similar results for MR to X-ray registrations, an image, reconstructed from at least 11 X-ray images was required. Reconstructions from more than 11 images had no effect on the registration results. PMID:16398411

  3. A large 2D PSD for thermal neutron detection

    NASA Astrophysics Data System (ADS)

    Knott, R. B.; Smith, G. C.; Watt, G.; Boldeman, J. W.

    1997-02-01

    A 2D PSD based on a MWPC has been constructed for a small angle neutron scattering instrument. The active area of the detector was 640 × 640 mm 2. To meet the specifications for neutron detection efficiency and spatial resolution, and to minimise parallax, the gas mixture was 190 kPa 3He plus 100 kPa CF 4, and the active volume had a thickness of 30 mm. The design maximum neutron count rate of the detector was 10 5 events per secod. The (calculated) neutron detection efficiency was 60% for 2 Å neutrons and the (measured) neutron energy resolution on the anode grid was typically 20% (fwhm). The location of a neutron detection event within the active area was determined using the wire-by-wire method: the spatial resolution (5 × 5 mm 2) was thereby defined by the wire geometry. A 16-channel charge-sensitive preamplifier/amplifier/comparator module has been developed with a channel sensitivity of 0.1 V/fC, noise line width of 0.4 fC (fwhm) and channel-to-channel cross-talk of less than 5%. The Proportional Counter Operating System (PCOS III) (LeCroy Corp, USA) was used for event encoding. The ECL signals produced by the 16 channel modules were latched in PCOS III by a trigger pulse from the anode and the fast encoders produce a position and width for each event. The information was transferred to a UNIX workstation for accumulation and online display.

  4. A large 2D PSD for thermal neutron detection

    SciTech Connect

    Knott, R.B.; Watt, G.; Boldeman, J.W.; Smith, G.C.

    1996-12-31

    A 2D PSD based on a MWPC has been constructed for a small angle neutron scattering instrument. The active area of the detector was 640 x 640 mm{sup 2}. To meet the specifications for neutron detection efficiency and spatial resolution, and to minimize parallax, the gas mixture was 190 kPa {sup 3}He plus 100 kPa CF{sub 4} and the active volume had a thickness of 30 mm. The design maximum neutron count-rate of the detector was 10{sup 5} events per second. The (calculated) neutron detection efficiency was 60% for 2{angstrom} neutrons and the (measured) neutron energy resolution on the anode grid was typically 20% (fwhm). The location of a neutron detection event within the active area was determined using the wire-by-wire method: the spatial resolution (5 x 5 mm{sup 2}) was thereby defined by the wire geometry. A 16 channel charge-sensitive preamplifier/amplifier/comparator module has been developed with a channel sensitivity of 0.1 V/fC, noise linewidth of 0.4 fC (fwhm) and channel-to-channel cross-talk of less than 5%. The Proportional Counter Operating System (PCOS III) (LeCroy Corp USA) was used for event encoding. The ECL signals produced by the 16 channel modules were latched in PCOS III by a trigger pulse from the anode and the fast encoders produce a position and width for each event. The information was transferred to a UNIX workstation for accumulation and online display.

  5. Mechanical characterization of 2D, 2D stitched, and 3D braided/RTM materials

    NASA Technical Reports Server (NTRS)

    Deaton, Jerry W.; Kullerd, Susan M.; Portanova, Marc A.

    1993-01-01

    Braided composite materials have potential for application in aircraft structures. Fuselage frames, floor beams, wing spars, and stiffeners are examples where braided composites could find application if cost effective processing and damage tolerance requirements are met. Another important consideration for braided composites relates to their mechanical properties and how they compare to the properties of composites produced by other textile composite processes being proposed for these applications. Unfortunately, mechanical property data for braided composites do not appear extensively in the literature. Data are presented in this paper on the mechanical characterization of 2D triaxial braid, 2D triaxial braid plus stitching, and 3D (through-the-thickness) braid composite materials. The braided preforms all had the same graphite tow size and the same nominal braid architectures, (+/- 30 deg/0 deg), and were resin transfer molded (RTM) using the same mold for each of two different resin systems. Static data are presented for notched and unnotched tension, notched and unnotched compression, and compression after impact strengths at room temperature. In addition, some static results, after environmental conditioning, are included. Baseline tension and compression fatigue results are also presented, but only for the 3D braided composite material with one of the resin systems.

  6. Bridging the Gap: From 2D Cell Culture to 3D Microengineered Extracellular Matrices.

    PubMed

    Li, Yanfen; Kilian, Kristopher A

    2015-12-01

    Historically the culture of mammalian cells in the laboratory has been performed on planar substrates with media cocktails that are optimized to maintain phenotype. However, it is becoming increasingly clear that much of biology discerned from 2D studies does not translate well to the 3D microenvironment. Over the last several decades, 2D and 3D microengineering approaches have been developed that better recapitulate the complex architecture and properties of in vivo tissue. Inspired by the infrastructure of the microelectronics industry, lithographic patterning approaches have taken center stage because of the ease in which cell-sized features can be engineered on surfaces and within a broad range of biocompatible materials. Patterning and templating techniques enable precise control over extracellular matrix properties including: composition, mechanics, geometry, cell-cell contact, and diffusion. In this review article we explore how the field of engineered extracellular matrices has evolved with the development of new hydrogel chemistry and the maturation of micro- and nano- fabrication. Guided by the spatiotemporal regulation of cell state in developing tissues, techniques for micropatterning in 2D, pseudo-3D systems, and patterning within 3D hydrogels will be discussed in the context of translating the information gained from 2D systems to synthetic engineered 3D tissues. PMID:26592366

  7. Conformation of self-assembled porphyrin dimers in liposome vesicles by phase-modulation 2D fluorescence spectroscopy

    PubMed Central

    Lott, Geoffrey A.; Perdomo-Ortiz, Alejandro; Utterback, James K.; Widom, Julia R.; Aspuru-Guzik, Aln; Marcus, Andrew H.

    2011-01-01

    By applying a phase-modulation fluorescence approach to 2D electronic spectroscopy, we studied the conformation-dependent exciton coupling of a porphyrin dimer embedded in a phospholipid bilayer membrane. Our measurements specify the relative angle and separation between interacting electronic transition dipole moments and thus provide a detailed characterization of dimer conformation. Phase-modulation 2D fluorescence spectroscopy (PM-2D FS) produces 2D spectra with distinct optical features, similar to those obtained using 2D photon-echo spectroscopy. Specifically, we studied magnesium meso tetraphenylporphyrin dimers, which form in the amphiphilic regions of 1,2-distearoyl-sn-glycero-3-phosphocholine liposomes. Comparison between experimental and simulated spectra show that although a wide range of dimer conformations can be inferred by either the linear absorption spectrum or the 2D spectrum alone, consideration of both types of spectra constrain the possible structures to a T-shaped geometry. These experiments establish the PM-2D FS method as an effective approach to elucidate chromophore dimer conformation. PMID:21940499

  8. Differential cytochrome P450 2D metabolism alters tafenoquine pharmacokinetics.

    PubMed

    Vuong, Chau; Xie, Lisa H; Potter, Brittney M J; Zhang, Jing; Zhang, Ping; Duan, Dehui; Nolan, Christina K; Sciotti, Richard J; Zottig, Victor E; Nanayakkara, N P Dhammika; Tekwani, Babu L; Walker, Larry A; Smith, Philip L; Paris, Robert M; Read, Lisa T; Li, Qigui; Pybus, Brandon S; Sousa, Jason C; Reichard, Gregory A; Smith, Bryan; Marcsisin, Sean R

    2015-07-01

    Cytochrome P450 (CYP) 2D metabolism is required for the liver-stage antimalarial efficacy of the 8-aminoquinoline molecule tafenoquine in mice. This could be problematic for Plasmodium vivax radical cure, as the human CYP 2D ortholog (2D6) is highly polymorphic. Diminished CYP 2D6 enzyme activity, as in the poor-metabolizer phenotype, could compromise radical curative efficacy in humans. Despite the importance of CYP 2D metabolism for tafenoquine liver-stage efficacy, the exact role that CYP 2D metabolism plays in the metabolism and pharmacokinetics of tafenoquine and other 8-aminoquinoline molecules has not been extensively studied. In this study, a series of tafenoquine pharmacokinetic experiments were conducted in mice with different CYP 2D metabolism statuses, including wild-type (WT) (reflecting extensive metabolizers for CYP 2D6 substrates) and CYPmouse 2D knockout (KO) (reflecting poor metabolizers for CYP 2D6 substrates) mice. Plasma and liver pharmacokinetic profiles from a single 20-mg/kg of body weight dose of tafenoquine differed between the strains; however, the differences were less striking than previous results obtained for primaquine in the same model. Additionally, the presence of a 5,6-ortho-quinone tafenoquine metabolite was examined in both mouse strains. The 5,6-ortho-quinone species of tafenoquine was observed, and concentrations of the metabolite were highest in the WT extensive-metabolizer phenotype. Altogether, this study indicates that CYP 2D metabolism in mice affects tafenoquine pharmacokinetics and could have implications for human tafenoquine pharmacokinetics in polymorphic CYP 2D6 human populations. PMID:25870069

  9. A Polyhedral Object's CSG-Rep Reconstruction From a Single 2D Line Drawing

    NASA Astrophysics Data System (ADS)

    Wang, Weidong; Grinstein, Georges G.

    1990-03-01

    The interpretation of a 2D line drawing as a 3D scene is an important area of study within the fields of artificial intelligence and machine vision. In the area of CAD/CAM, research has focused on the reconstruction of a 3D solid from its engineering drawings, either with two views or three views, or from its wireframe representation. We have been working on the problem of automatically reconstructing a 3D solid object's Constructive Solid Geometry (CSG) representation from a single 2D line drawing of the object. This paper describes our approach as well as some preliminary results. We validate our approach on a restricted set of objects consisting of simple rectilinear polyhedra. Using the Huffman-Clowes labeling scheme we are able to successfully identify the primitive blocks necessary for the CSG tree generation, as well as the set operations that must be applied to them. Extension to general polyhedra is also discussed.

  10. Ultracold gas of ground-state polar KRb molecules in 2D

    NASA Astrophysics Data System (ADS)

    Neyenhuis, B.; Wang, D.; de Miranda, M. H. G.; Chotia, A.; Ye, J.; Jin, D. S.

    2010-03-01

    We report on our ongoing studies of dipolar interactions in ground-state KRb molecules prepared in the quantum regime. At large dipole moment we see a dramatic increase in the inelastic scattering rate due to attractive head-to-tail interactions between molecules [1]. To suppress this inelastic loss we are preparing a gas of polar molecules in a 2D confined geometry provided by a one-dimensional optical lattice. We will explore the effect of the 2D confinement on the lifetime of the trapped molecule gas. [4pt] [1] K.-K. Ni, S. Ospelkaus, D. Wang, G. Quemener, B. Neyenhuis, M. H. G. de Miranda, J. L. Bohn, J. Ye, D. S. Jin, Dipolar collisions of polar molecules in the quantum regime. arXiv:1001.2809.

  11. Multiple Stokes wavelength generation in H(2), D(2), and CH(4) for lidar aerosol measurements.

    PubMed

    Chu, Z; Singh, U N; Wilkerson, T D

    1991-10-20

    We report experimental results of multiple Stokes generation of a frequency-doubled Nd:YAG laser in H(2), D(2), and CH(4) in a focusing geometry. The energies at four Stokes orders were measured as functions of pump energy and gas pressure. The characteristics of the Stokes radiation generated in these gases are compared for optical production of multiple wavelengths. The competition between Raman components is analyzed in terms of cascade Raman scattering and four-wave mixing. The results indicate the possibility of using these generation processes for atmospheric aerosol measurements by means of multiwavelength lidar systems. Also this study distinguishes between the gases, as regards the tendency to produce several wavelengths (H(2), D(2)) versus the preference to produce mainly first Stokes radiation (CH(4)). PMID:20717207

  12. Spatiotemporal stress/strain correlations in a quasi-2D jammed emulsion

    NASA Astrophysics Data System (ADS)

    Desmond, Kenneth; Weeks, Eric R.

    2012-02-01

    We flow quasi-2D emulsions in a flow geometry analogous to pure shear to better understand the microscopic events within jammed materials during the straining process. Our quasi-2D system serves as an experimental model system of jamming and consists of oil-in-water emulsion droplets confined between two parallel plates. Using a technique we have developed, we can determine the forces between pairs of droplets in contact based on each droplet's deformation. By imaging the motion and deformation of the droplets during the flowing process, we quantify the microscopic events using spatiotemporal correlations in strain and stress. We study these spatiotemporal correlations at various droplet concentrations to understand how the microscopic events change as we approach the jamming point.

  13. A Comparison of 2D to 3D Hydro Simulations of Asteroid Mitigation by a Strong Surface Explosion

    NASA Astrophysics Data System (ADS)

    Weaver, R.; Dearholdt, W.

    2011-12-01

    Disruption of a potentially hazardous object (PHO) by an energetic surface or subsurface burst is considered as one possible method of impact-hazard mitigation. This technique of employing surface or subsurface explosions has been popularized in the media but is probably one of the lower priority deflection/disruption methods, unless the warning time is short. In all of our current simulation we use realistic RADAR shape models for the initial geometry, not merely spherical objects. The non-sphericity of the geometry is very important in the resultant shock hydrodynamic evolution. This work is a follow-on to previous 2D simulations with the RAGE hydrocode to simulate the imparted momentum as a function of depth-of-burial (DOB) on a non-spherical "rubble pile" composition. Specifically, here, we have started a full 3D simulation of a 1 Mt surface explosion on a porous (~40% porosity) "rubble pile" model in the shape of asteroid 25143 Itokawa. This simulation has progressed far enough to start comparisons between the 2D and 3D runs of this model. There are significant changes in the 3D geometry that reduce the momentum imparted to the asteroid in these RAGE simulations. I will discuss this set of simulations, give some background results from previous 2D simulations and indicate the differences between 2D and 3D simulations.

  14. Klassifikation von Standardebenen in der 2D-Echokardiographie mittels 2D-3D-Bildregistrierung

    NASA Astrophysics Data System (ADS)

    Bergmeir, Christoph; Subramanian, Navneeth

    Zum Zweck der Entwicklung eines Systems, das einen unerfahrenen Anwender von Ultraschall (US) zur Aufnahme relevanter anatomischer Strukturen leitet, untersuchen wir die Machbarkeit von 2D-US zu 3D-CT Registrierung. Wir verwenden US-Aufnahmen von Standardebenen des Herzens, welche zu einem 3D-CT-Modell registriert werden. Unser Algorithmus unterzieht sowohl die US-Bilder als auch den CT-Datensatz Vorverarbeitungsschritten, welche die Daten durch Segmentierung auf wesentliche Informationen in Form von Labein für Muskel und Blut reduzieren. Anschließend werden diese Label zur Registrierung mittels der Match-Cardinality-Metrik genutzt. Durch mehrmaliges Registrieren mit verschiedenen Initialisierungen ermitteln wir die im US-Bild sichtbare Standardebene. Wir evaluierten die Methode auf sieben US-Bildern von Standardebenen. Fünf davon wurden korrekt zugeordnet.

  15. 2D Voronoi tessellation generated by lines and belts of dots

    NASA Astrophysics Data System (ADS)

    Fanfoni, M.; Filabozzi, A.; Placidi, E.; Patella, F.; Balzarotti, A.; Arciprete, F.

    2016-01-01

    The application of the Voronoi tessellation for studying the nucleation process at the basis of thin film formation dates back to the end of nineties. In particular, Poissonian and spatial correlated nuclei distributions were investigated. The growth of stressed interfaces, however, has evidenced that elastic strain can modify the spatial distribution of nuclei giving rise to new challenges at the level of stochastic geometry. Here we report a study of a 2D nucleation of dots randomly arranged in lines and/or belts on the surface. The results are compared to the experimental case of multilayer structures of InAs quantum dots grown on GaAs (001).

  16. Takes Electric or Magnetic field data through Inversion process a 2D Distributon

    Energy Science and Technology Software Center (ESTSC)

    2008-05-01

    Program images 2D distributions in electrical conductivity for geophysical applications. The program can treat surface based and cross well measurement geometries, including inductive and grounded source antennas in the quasi-static limit. The algorithm using Krylov iterative methods to solve for the predicted data and model sensitivities. The model update is achieved using a Gauss-newton optimization process for stability. A new line search capability is now included in the algorithm to insure global convergence of themore » inversion iteration.« less

  17. Integrated Design for Manufacturing of Braided Preforms for Advanced Composites Part I: 2D Braiding

    NASA Astrophysics Data System (ADS)

    Gao, Yan Tao; Ko, Frank K.; Hu, Hong

    2013-12-01

    This paper presents a 2D braiding design system for advanced textile structural composites was based on dynamic models. A software package to assist in the design of braided preform manufacturing has been developed. The package allows design parameters (machine speeds, fiber volume fraction, tightness factor, etc.) to be easily obtained and the relationships between said parameters to be demonstrated graphically. The fabirc geometry model (FGM) method was adopted to evaluate the mechanical properties of the composites. Experimental evidence demonstrates the success of the use of dynamic models in the design software for the manufacture of braided fabric preforms.

  18. Coupling 2-D cylindrical and 3-D x-y-z transport computations

    SciTech Connect

    Abu-Shumays, I.K.; Yehnert, C.E.; Pitcairn, T.N.

    1998-06-30

    This paper describes a new two-dimensional (2-D) cylindrical geometry to three-dimensional (3-D) rectangular x-y-z splice option for multi-dimensional discrete ordinates solutions to the neutron (photon) transport equation. Of particular interest are the simple transformations developed and applied in order to carry out the required spatial and angular interpolations. The spatial interpolations are linear and equivalent to those applied elsewhere. The angular interpolations are based on a high order spherical harmonics representation of the angular flux. Advantages of the current angular interpolations over previous work are discussed. An application to an intricate streaming problem is provided to demonstrate the advantages of the new method for efficient and accurate prediction of particle behavior in complex geometries.

  19. Models Ion Trajectories in 2D and 3D Electrostatic and Magnetic Fields

    Energy Science and Technology Software Center (ESTSC)

    2000-02-21

    SIMION3D7.0REV is a C based ion optics simulation program that can model complex problems using Laplace equation solutions for potential fields. The program uses an ion optics workbench that can hold up to 200 2D and/or 3D electrostatic/magnetic potential arrays. Arrays can have up to 50,000,000 points. SIMION3D7.0''s 32 bit virtual Graphics User Interface provides a highly interactive advanced user environment. All potential arrays are visualized as 3D objects that the user can cut awaymore » to inspect ion trajectories and potential energy surfaces. User programs allow the user to customize the program for specific simulations. A geometry file option supports the definition of highly complex array geometry. Algorithm modifications have improved this version''s computational speed and accuracy.« less

  20. Tamoxifen and CYP2D6: A Contradiction of Data

    PubMed Central

    Hertz, Daniel L.; McLeod, Howard L.

    2012-01-01

    Tamoxifen is an effective antiestrogen used in the treatment of hormone receptorpositive breast cancer. Bioconversion of tamoxifen to endoxifen, its most abundant active metabolite, is primarily dependent on the activity of cytochrome P450 2D6 (CYP2D6), which is highly polymorphic. Over 20 published studies have reported on the potential association between CYP2D6 polymorphism and tamoxifen treatment outcome, with highly inconsistent results. The purpose of this review is to explore differences among 17 independent studies to identify factors that may have contributed to the discrepant findings. This report discusses six putative factors that are grouped into two categories: (a) clinical management criteria: hormone receptor classification, menopausal status, and tamoxifen combination therapy; (b) pharmacologic criteria: genotyping comprehensiveness, CYP2D6 inhibitor coadministration, and tamoxifen adherence. Comparison of these factors between the positive and negative studies suggests that tamoxifen combination therapy, genotyping comprehensiveness, and CYP2D6 inhibitor coadministration may account for some of the contradictory results. Future association studies on the link between CYP2D6 genotype and tamoxifen treatment efficacy should account for combination therapy and CYP2D6 inhibition, and interrogate as many CYP2D6 alleles as possible. PMID:22531359

  1. Integrating Mobile Multimedia into Textbooks: 2D Barcodes

    ERIC Educational Resources Information Center

    Uluyol, Celebi; Agca, R. Kagan

    2012-01-01

    The major goal of this study was to empirically compare text-plus-mobile phone learning using an integrated 2D barcode tag in a printed text with three other conditions described in multimedia learning theory. The method examined in the study involved modifications of the instructional material such that: a 2D barcode was used near the text, the

  2. Integrating Mobile Multimedia into Textbooks: 2D Barcodes

    ERIC Educational Resources Information Center

    Uluyol, Celebi; Agca, R. Kagan

    2012-01-01

    The major goal of this study was to empirically compare text-plus-mobile phone learning using an integrated 2D barcode tag in a printed text with three other conditions described in multimedia learning theory. The method examined in the study involved modifications of the instructional material such that: a 2D barcode was used near the text, the…

  3. Regulation of ligands for the NKG2D activating receptor

    PubMed Central

    Raulet, David H.; Gasser, Stephan; Gowen, Benjamin G.; Deng, Weiwen; Jung, Heiyoun

    2014-01-01

    NKG2D is an activating receptor expressed by all NK cells and subsets of T cells. It serves as a major recognition receptor for detection and elimination of transformed and infected cells and participates in the genesis of several inflammatory diseases. The ligands for NKG2D are self-proteins that are induced by pathways that are active in certain pathophysiological states. NKG2D ligands are regulated transcriptionally, at the level of mRNA and protein stability, and by cleavage from the cell surface. In some cases, ligand induction can be attributed to pathways that are activated specifically in cancer cells or infected cells. We review the numerous pathways that have been implicated in the regulation of NKG2D ligands, discuss the pathologic states in which those pathways are likely to act, and attempt to synthesize the findings into general schemes of NKG2D ligand regulation in NK cell responses to cancer and infection. PMID:23298206

  4. 2D gasdynamic simulation of the kinetics of an oxygen-iodine laser with electric-discharge generation of singlet oxygen

    SciTech Connect

    Chukalovsky, A. A.; Rakhimova, T. V.; Klopovsky, K. S.; Mankelevich, Yu. A.; Proshina, O. V.

    2011-03-15

    The kinetic processes occurring in an electric-discharge oxygen-iodine laser are analyzed with the help of a 2D (r, z) gasdynamic model taking into account transport of excited oxygen, singlet oxygen, and radicals from the electric discharge and their mixing with the iodine-containing gas. The main processes affecting the dynamics of the gas temperature and gain are revealed. The simulation results obtained using the 2D model agree well with the experimental data on the mixture gain. A subsonic oxygen-iodine laser in which singlet oxygen is generated by a 350 W transverse RF discharge excited in an oxygen flow at a pressure P = 10 Torr and the discharge tube wall is covered with mercury oxide is simulated. The simulated mixing system is optimized in terms of the flow rate and the degree of preliminary dissociation of the iodine flow. The optimal regime of continuous operation of a subsonic electric-discharge oxygen-iodine laser is found.

  5. The geometry and forcefield of acetylene

    NASA Astrophysics Data System (ADS)

    Carter, Stuart; Handy, Nicholas C.

    The variational method has been used to determine the geometry and ground state potential surface of acetylene. All the parameters were refined through a least-squares fit to J = 0, 1 levels for C2H2 and C2D2. A new program was written to evaluate the rovibrational energy levels; in particular, primitive basis sets were developed for all values of J taking into account the singularity for linear geometries. Thus ?, ?, ?states can be refined. The full theory for tetraatomic linear molecules is presented. In this refinement 150 observed levels were used as data, below 10 000 cm-1. The geometry was refined and gives Re (CC) = 1.2028 , Re (CH) = 1.0618 , to be compared with the best experimentally derived values of 1.2027 0.0005 , 1.062 0.001 , respectively. The zero point energies are 5771.1 cm-1 for C2H2and 4571.1 cm-1 for C2D2.

  6. The Beauty of Geometry

    ERIC Educational Resources Information Center

    Morris, Barbara H.

    2004-01-01

    This article describes a geometry project that used the beauty of stained-glass-window designs to teach middle school students about geometric figures and concepts. Three honors prealgebra teachers and a middle school mathematics gifted intervention specialist created a geometry project that covered the curriculum and also assessed students'

  7. Geometry of multihadron production

    SciTech Connect

    Bjorken, J.D.

    1994-10-01

    This summary talk only reviews a small sample of topics featured at this symposium: Introduction; The Geometry and Geography of Phase space; Space-Time Geometry and HBT; Multiplicities, Intermittency, Correlations; Disoriented Chiral Condensate; Deep Inelastic Scattering at HERA; and Other Contributions.

  8. Euclidean Geometry via Programming.

    ERIC Educational Resources Information Center

    Filimonov, Rossen; Kreith, Kurt

    1992-01-01

    Describes the Plane Geometry System computer software developed at the Educational Computer Systems laboratory in Sofia, Bulgaria. The system enables students to use the concept of "algorithm" to correspond to the process of "deductive proof" in the development of plane geometry. Provides an example of the software's capability and compares it to

  9. Geometry + Technology = Proof

    ERIC Educational Resources Information Center

    Lyublinskaya, Irina; Funsch, Dan

    2012-01-01

    Several interactive geometry software packages are available today to secondary school teachers. An example is The Geometer's Sketchpad[R] (GSP), also known as Dynamic Geometry[R] software, developed by Key Curriculum Press. This numeric based technology has been widely adopted in the last twenty years, and a vast amount of creativity has been

  10. Geometry + Technology = Proof

    ERIC Educational Resources Information Center

    Lyublinskaya, Irina; Funsch, Dan

    2012-01-01

    Several interactive geometry software packages are available today to secondary school teachers. An example is The Geometer's Sketchpad[R] (GSP), also known as Dynamic Geometry[R] software, developed by Key Curriculum Press. This numeric based technology has been widely adopted in the last twenty years, and a vast amount of creativity has been…

  11. An application of geostatistics and fractal geometry for reservoir characterization

    SciTech Connect

    Aasum, Y.; Kelkar, M.G. ); Gupta, S.P. )

    1991-03-01

    This paper presents an application of geostatistics and fractal geometry concepts for 2D characterization of rock properties (k and {phi}) in a dolomitic, layered-cake reservoir. The results indicate that lack of closely spaced data yield effectively random distributions of properties. Further, incorporation of geology reduces uncertainties in fractal interpolation of wellbore properties.

  12. 2D vs. 3D mammography observer study

    NASA Astrophysics Data System (ADS)

    Fernandez, James Reza F.; Hovanessian-Larsen, Linda; Liu, Brent

    2011-03-01

    Breast cancer is the most common type of non-skin cancer in women. 2D mammography is a screening tool to aid in the early detection of breast cancer, but has diagnostic limitations of overlapping tissues, especially in dense breasts. 3D mammography has the potential to improve detection outcomes by increasing specificity, and a new 3D screening tool with a 3D display for mammography aims to improve performance and efficiency as compared to 2D mammography. An observer study using a mammography phantom was performed to compare traditional 2D mammography with this ne 3D mammography technique. In comparing 3D and 2D mammography there was no difference in calcification detection, and mass detection was better in 2D as compared to 3D. There was a significant decrease in reading time for masses, calcifications, and normals in 3D compared to 2D, however, as well as more favorable confidence levels in reading normal cases. Given the limitations of the mammography phantom used, however, a clearer picture in comparing 3D and 2D mammography may be better acquired with the incorporation of human studies in the future.

  13. Efficient 2D MRI relaxometry using compressed sensing

    NASA Astrophysics Data System (ADS)

    Bai, Ruiliang; Cloninger, Alexander; Czaja, Wojciech; Basser, Peter J.

    2015-06-01

    Potential applications of 2D relaxation spectrum NMR and MRI to characterize complex water dynamics (e.g., compartmental exchange) in biology and other disciplines have increased in recent years. However, the large amount of data and long MR acquisition times required for conventional 2D MR relaxometry limits its applicability for in vivo preclinical and clinical MRI. We present a new MR pipeline for 2D relaxometry that incorporates compressed sensing (CS) as a means to vastly reduce the amount of 2D relaxation data needed for material and tissue characterization without compromising data quality. Unlike the conventional CS reconstruction in the Fourier space (k-space), the proposed CS algorithm is directly applied onto the Laplace space (the joint 2D relaxation data) without compressing k-space to reduce the amount of data required for 2D relaxation spectra. This framework is validated using synthetic data, with NMR data acquired in a well-characterized urea/water phantom, and on fixed porcine spinal cord tissue. The quality of the CS-reconstructed spectra was comparable to that of the conventional 2D relaxation spectra, as assessed using global correlation, local contrast between peaks, peak amplitude and relaxation parameters, etc. This result brings this important type of contrast closer to being realized in preclinical, clinical, and other applications.

  14. Efficient 2D MRI relaxometry using compressed sensing.

    PubMed

    Bai, Ruiliang; Cloninger, Alexander; Czaja, Wojciech; Basser, Peter J

    2015-06-01

    Potential applications of 2D relaxation spectrum NMR and MRI to characterize complex water dynamics (e.g., compartmental exchange) in biology and other disciplines have increased in recent years. However, the large amount of data and long MR acquisition times required for conventional 2D MR relaxometry limits its applicability for in vivo preclinical and clinical MRI. We present a new MR pipeline for 2D relaxometry that incorporates compressed sensing (CS) as a means to vastly reduce the amount of 2D relaxation data needed for material and tissue characterization without compromising data quality. Unlike the conventional CS reconstruction in the Fourier space (k-space), the proposed CS algorithm is directly applied onto the Laplace space (the joint 2D relaxation data) without compressing k-space to reduce the amount of data required for 2D relaxation spectra. This framework is validated using synthetic data, with NMR data acquired in a well-characterized urea/water phantom, and on fixed porcine spinal cord tissue. The quality of the CS-reconstructed spectra was comparable to that of the conventional 2D relaxation spectra, as assessed using global correlation, local contrast between peaks, peak amplitude and relaxation parameters, etc. This result brings this important type of contrast closer to being realized in preclinical, clinical, and other applications. PMID:25917134

  15. 2-D Versus 3-D Magnetotelluric Data Interpretation

    NASA Astrophysics Data System (ADS)

    Ledo, Juanjo

    2005-09-01

    In recent years, the number of publications dealing with the mathematical and physical 3-D aspects of the magnetotelluric method has increased drastically. However, field experiments on a grid are often impractical and surveys are frequently restricted to single or widely separated profiles. So, in many cases we find ourselves with the following question: is the applicability of the 2-D hypothesis valid to extract geoelectric and geological information from real 3-D environments? The aim of this paper is to explore a few instructive but general situations to understand the basics of a 2-D interpretation of 3-D magnetotelluric data and to determine which data subset (TE-mode or TM-mode) is best for obtaining the electrical conductivity distribution of the subsurface using 2-D techniques. A review of the mathematical and physical fundamentals of the electromagnetic fields generated by a simple 3-D structure allows us to prioritise the choice of modes in a 2-D interpretation of responses influenced by 3-D structures. This analysis is corroborated by numerical results from synthetic models and by real data acquired by other authors. One important result of this analysis is that the mode most unaffected by 3-D effects depends on the position of the 3-D structure with respect to the regional 2-D strike direction. When the 3-D body is normal to the regional strike, the TE-mode is affected mainly by galvanic effects, while the TM-mode is affected by galvanic and inductive effects. In this case, a 2-D interpretation of the TM-mode is prone to error. When the 3-D body is parallel to the regional 2-D strike the TE-mode is affected by galvanic and inductive effects and the TM-mode is affected mainly by galvanic effects, making it more suitable for 2-D interpretation. In general, a wise 2-D interpretation of 3-D magnetotelluric data can be a guide to a reasonable geological interpretation.

  16. Experimental and theoretical studies of the reactions Y (a2D) + H2CO and Y (a2D) + CH3CHO.

    PubMed

    Schroden, Jonathan J; Davis, H Floyd; Bayse, Craig A

    2007-11-15

    The reactions of ground state Y (a(2)D) with H(2)CO and CH(3)CHO were studied at a range of collision energies in crossed molecular beams. For reaction with H(2)CO, three product channels were observed: formation of YH(2) + CO, YCO + H(2), and YHCO + H. Reaction with CH(3)CHO led to three analogous product channels involving formation of HYCH(3) + CO, YCH(2)CO + H(2), and YCH(3)CO + H. The calculated CCSD(T) energetics and DFT geometries for key intermediates in both reactions, together with RRKM theory, are used to calculate a priori the branching ratios between various product channels. These calculated values are compared to those obtained experimentally. PMID:17941617

  17. Comparison of 2D and 3D gamma analyses

    PubMed Central

    Pulliam, Kiley B.; Huang, Jessie Y.; Howell, Rebecca M.; Followill, David; Bosca, Ryan; ODaniel, Jennifer; Kry, Stephen F.

    2014-01-01

    Purpose: As clinics begin to use 3D metrics for intensity-modulated radiation therapy (IMRT) quality assurance, it must be noted that these metrics will often produce results different from those produced by their 2D counterparts. 3D and 2D gamma analyses would be expected to produce different values, in part because of the different search space available. In the present investigation, the authors compared the results of 2D and 3D gamma analysis (where both datasets were generated in the same manner) for clinical treatment plans. Methods: Fifty IMRT plans were selected from the authors clinical database, and recalculated using Monte Carlo. Treatment planning system-calculated (evaluated dose distributions) and Monte Carlo-recalculated (reference dose distributions) dose distributions were compared using 2D and 3D gamma analysis. This analysis was performed using a variety of dose-difference (5%, 3%, 2%, and 1%) and distance-to-agreement (5, 3, 2, and 1 mm) acceptance criteria, low-dose thresholds (5%, 10%, and 15% of the prescription dose), and data grid sizes (1.0, 1.5, and 3.0 mm). Each comparison was evaluated to determine the average 2D and 3D gamma, lower 95th percentile gamma value, and percentage of pixels passing gamma. Results: The average gamma, lower 95th percentile gamma value, and percentage of passing pixels for each acceptance criterion demonstrated better agreement for 3D than for 2D analysis for every plan comparison. The average difference in the percentage of passing pixels between the 2D and 3D analyses with no low-dose threshold ranged from 0.9% to 2.1%. Similarly, using a low-dose threshold resulted in a difference between the mean 2D and 3D results, ranging from 0.8% to 1.5%. The authors observed no appreciable differences in gamma with changes in the data density (constant difference: 0.8% for 2D vs 3D). Conclusions: The authors found that 3D gamma analysis resulted in up to 2.9% more pixels passing than 2D analysis. It must be noted that clinical 2D versus 3D datasets may have additional differencesfor example, if 2D measurements are made with a different dosimeter than 3D measurements. Factors such as inherent dosimeter differences may be an important additional consideration to the extra dimension of available data that was evaluated in this study. PMID:24506601

  18. Materials for Flexible, Stretchable Electronics: Graphene and 2D Materials

    NASA Astrophysics Data System (ADS)

    Kim, Sang Jin; Choi, Kyoungjun; Lee, Bora; Kim, Yuna; Hong, Byung Hee

    2015-07-01

    Recently, 2D materials have been intensively studied as emerging materials for future electronics, including flexible electronics, photonics, and electrochemical energy storage devices. Among representative 2D materials (such as graphene, boron nitride, and transition metal dichalcogenides) that exhibit extraordinary properties, graphene stands out in the flexible electronics field due to its combination of high electron mobility, high thermal conductivity, high specific surface area, high optical transparency, excellent mechanical flexibility, and environmental stability. This review covers the synthesis, transfer, and characterization methods of graphene and 2D materials and graphene's application to flexible devices as well as comparison with other competing materials.

  19. Comparison of 2D and 3D gamma analyses

    SciTech Connect

    Pulliam, Kiley B.; Huang, Jessie Y.; Howell, Rebecca M.; Followill, David; Kry, Stephen F.; Bosca, Ryan; O’Daniel, Jennifer

    2014-02-15

    Purpose: As clinics begin to use 3D metrics for intensity-modulated radiation therapy (IMRT) quality assurance, it must be noted that these metrics will often produce results different from those produced by their 2D counterparts. 3D and 2D gamma analyses would be expected to produce different values, in part because of the different search space available. In the present investigation, the authors compared the results of 2D and 3D gamma analysis (where both datasets were generated in the same manner) for clinical treatment plans. Methods: Fifty IMRT plans were selected from the authors’ clinical database, and recalculated using Monte Carlo. Treatment planning system-calculated (“evaluated dose distributions”) and Monte Carlo-recalculated (“reference dose distributions”) dose distributions were compared using 2D and 3D gamma analysis. This analysis was performed using a variety of dose-difference (5%, 3%, 2%, and 1%) and distance-to-agreement (5, 3, 2, and 1 mm) acceptance criteria, low-dose thresholds (5%, 10%, and 15% of the prescription dose), and data grid sizes (1.0, 1.5, and 3.0 mm). Each comparison was evaluated to determine the average 2D and 3D gamma, lower 95th percentile gamma value, and percentage of pixels passing gamma. Results: The average gamma, lower 95th percentile gamma value, and percentage of passing pixels for each acceptance criterion demonstrated better agreement for 3D than for 2D analysis for every plan comparison. The average difference in the percentage of passing pixels between the 2D and 3D analyses with no low-dose threshold ranged from 0.9% to 2.1%. Similarly, using a low-dose threshold resulted in a difference between the mean 2D and 3D results, ranging from 0.8% to 1.5%. The authors observed no appreciable differences in gamma with changes in the data density (constant difference: 0.8% for 2D vs 3D). Conclusions: The authors found that 3D gamma analysis resulted in up to 2.9% more pixels passing than 2D analysis. It must be noted that clinical 2D versus 3D datasets may have additional differences—for example, if 2D measurements are made with a different dosimeter than 3D measurements. Factors such as inherent dosimeter differences may be an important additional consideration to the extra dimension of available data that was evaluated in this study.

  20. Comparison of 2D and 3D gamma analyses

    SciTech Connect

    Pulliam, Kiley B.; Huang, Jessie Y.; Howell, Rebecca M.; Followill, David; Kry, Stephen F.; Bosca, Ryan; ODaniel, Jennifer

    2014-02-15

    Purpose: As clinics begin to use 3D metrics for intensity-modulated radiation therapy (IMRT) quality assurance, it must be noted that these metrics will often produce results different from those produced by their 2D counterparts. 3D and 2D gamma analyses would be expected to produce different values, in part because of the different search space available. In the present investigation, the authors compared the results of 2D and 3D gamma analysis (where both datasets were generated in the same manner) for clinical treatment plans. Methods: Fifty IMRT plans were selected from the authors clinical database, and recalculated using Monte Carlo. Treatment planning system-calculated (evaluated dose distributions) and Monte Carlo-recalculated (reference dose distributions) dose distributions were compared using 2D and 3D gamma analysis. This analysis was performed using a variety of dose-difference (5%, 3%, 2%, and 1%) and distance-to-agreement (5, 3, 2, and 1 mm) acceptance criteria, low-dose thresholds (5%, 10%, and 15% of the prescription dose), and data grid sizes (1.0, 1.5, and 3.0 mm). Each comparison was evaluated to determine the average 2D and 3D gamma, lower 95th percentile gamma value, and percentage of pixels passing gamma. Results: The average gamma, lower 95th percentile gamma value, and percentage of passing pixels for each acceptance criterion demonstrated better agreement for 3D than for 2D analysis for every plan comparison. The average difference in the percentage of passing pixels between the 2D and 3D analyses with no low-dose threshold ranged from 0.9% to 2.1%. Similarly, using a low-dose threshold resulted in a difference between the mean 2D and 3D results, ranging from 0.8% to 1.5%. The authors observed no appreciable differences in gamma with changes in the data density (constant difference: 0.8% for 2D vs 3D). Conclusions: The authors found that 3D gamma analysis resulted in up to 2.9% more pixels passing than 2D analysis. It must be noted that clinical 2D versus 3D datasets may have additional differencesfor example, if 2D measurements are made with a different dosimeter than 3D measurements. Factors such as inherent dosimeter differences may be an important additional consideration to the extra dimension of available data that was evaluated in this study.

  1. Developing mobile BIM/2D barcode-based automated facility management system.

    PubMed

    Lin, Yu-Cheng; Su, Yu-Chih; Chen, Yen-Pei

    2014-01-01

    Facility management (FM) has become an important topic in research on the operation and maintenance phase. Managing the work of FM effectively is extremely difficult owing to the variety of environments. One of the difficulties is the performance of two-dimensional (2D) graphics when depicting facilities. Building information modeling (BIM) uses precise geometry and relevant data to support the facilities depicted in three-dimensional (3D) object-oriented computer-aided design (CAD). This paper proposes a new and practical methodology with application to FM that uses an integrated 2D barcode and the BIM approach. Using 2D barcode and BIM technologies, this study proposes a mobile automated BIM-based facility management (BIMFM) system for FM staff in the operation and maintenance phase. The mobile automated BIMFM system is then applied in a selected case study of a commercial building project in Taiwan to verify the proposed methodology and demonstrate its effectiveness in FM practice. The combined results demonstrate that a BIMFM-like system can be an effective mobile automated FM tool. The advantage of the mobile automated BIMFM system lies not only in improving FM work efficiency for the FM staff but also in facilitating FM updates and transfers in the BIM environment. PMID:25250373

  2. Design of black phosphorus 2D nanomechanical resonators by exploiting the intrinsic mechanical anisotropy

    NASA Astrophysics Data System (ADS)

    Wang, Zenghui; X-L Feng, Philip

    2015-06-01

    Black phosphorus (P), a layered material that can be isolated down to individual 2D crystalline sheets, exhibits highly anisotropic mechanical properties due to its corrugated crystal structure in each atomic layer, which are intriguing for two-dimensional (2D) nanomechanical devices. Here we lay the framework for describing the mechanical resonant responses in free-standing black P structures, by using a combination of analytical modeling and numerical simulation. We find that thicker devices (>100 nm) operating in the elastic plate regime exhibit pronounced signatures of mechanical anisotropy, and can lead to new multimode resonant characteristics in terms of mode sequences, shapes, and orientational preferences that are unavailable in nanomechanical resonators made of isotropic materials. In addition, through investigating devices with different geometries, we identify the resonant responses dependence on crystal orientation in asymmetric devices, and evaluate the effects from the degree of anisotropy. The results suggest a pathway towards harnessing the mechanical anisotropy in black P for building novel 2D nanomechanical devices and resonant transducers with engineerable multimode functions.

  3. Developing Mobile BIM/2D Barcode-Based Automated Facility Management System

    PubMed Central

    Chen, Yen-Pei

    2014-01-01

    Facility management (FM) has become an important topic in research on the operation and maintenance phase. Managing the work of FM effectively is extremely difficult owing to the variety of environments. One of the difficulties is the performance of two-dimensional (2D) graphics when depicting facilities. Building information modeling (BIM) uses precise geometry and relevant data to support the facilities depicted in three-dimensional (3D) object-oriented computer-aided design (CAD). This paper proposes a new and practical methodology with application to FM that uses an integrated 2D barcode and the BIM approach. Using 2D barcode and BIM technologies, this study proposes a mobile automated BIM-based facility management (BIMFM) system for FM staff in the operation and maintenance phase. The mobile automated BIMFM system is then applied in a selected case study of a commercial building project in Taiwan to verify the proposed methodology and demonstrate its effectiveness in FM practice. The combined results demonstrate that a BIMFM-like system can be an effective mobile automated FM tool. The advantage of the mobile automated BIMFM system lies not only in improving FM work efficiency for the FM staff but also in facilitating FM updates and transfers in the BIM environment. PMID:25250373

  4. Strongly Correlated 2D Quantum Phases with Cold Polar Molecules: Controlling the Shape of the Interaction Potential

    SciTech Connect

    Buechler, H. P.; Micheli, A.; Pupillo, G.; Zoller, P.; Demler, E.; Lukin, M.; Prokof'ev, N.

    2007-02-09

    We discuss techniques to tune and shape the long-range part of the interaction potentials in quantum gases of bosonic polar molecules by dressing rotational excitations with static and microwave fields. This provides a novel tool towards engineering strongly correlated quantum phases in combination with low-dimensional trapping geometries. As an illustration, we discuss the 2D superfluid-crystal quantum phase transition for polar molecules interacting via an electric-field-induced dipole-dipole potential.

  5. [Geometrical model of spiral-cyclical self-organization of morphofunctional modules with two-dimensional (2D) transfer channels].

    PubMed

    Shchepetkin, I A; Sergeev, M A

    2001-01-01

    The general model of spiral-cyclic self-organization of morphofunctional modules has been studied with the help of elliptic Riemannian geometry. Depending on the level of hierarchy cells, groups of cells, macromolecules or subcellular components can function as separate biological units. The hierarchically coordinated morphofunctional modules of biological pattern with two-dimensional (2D) channels of morphogenes transfer are formed in the process of geometric transformation. The width of 2D channel is regulated by module parameters, whereas the direction of transport is controlled by vector of module electrostatic field. The disturbance of morphogenesis in the model is regarded as a change of reciprocal hierarchically coordinated arrangement of morphofunctional modules that causes branching of 2D channels without general power- and mass transfer. The model can be used for constructing concrete analogies of self-organization of morphofunctional modules in onto- and phylogenesis. PMID:11548404

  6. Distinguishing viscosity and surface friction in quasi-2D flows

    NASA Astrophysics Data System (ADS)

    Fontana, Paul W.; Titmus, Edward

    2008-11-01

    In many experimental and natural quasi-two-dimensional (Q-2D) flows the effects of internal viscosity and surface friction are significant but difficult to distinguish. We demonstrate precise, independent measurements of both kinematic viscosity and coefficient of external drag in a Q-2D experiment using soap films in a circular Couette cell configuration, using a combination of vortex decay rates and steady-state shear lengths. Dynamics at scales shorter (longer) than the shear length are dominated by internal viscosity (surface friction). The technique can be generalized to other flow configurations and promises to aid in the quantitative analysis of many Q-2D experiments. Currently the measurements are being used to make quantitative tests of the theoretical stability threshold in 2D vortex arrays.

  7. From weakly to strongly interacting 2D Fermi gases

    NASA Astrophysics Data System (ADS)

    Dyke, Paul; Fenech, Kristian; Lingham, Marcus; Peppler, Tyson; Hoinka, Sascha; Vale, Chris

    2014-05-01

    We study ultracold 2D Fermi gases of 6Li formed in a highly oblate trapping potential. The potential is generated by a cylindrically focused, blue detuned TEM01 mode laser beam. Weak magnetic field curvature provides highly harmonic confinement in the radial direction and we can readily produce single clouds with an aspect ratio of 230. Our experiments investigate the dimensional crossover from 3D to 2D for a two component Fermi gas in the Bose-Einstein Condensate to Bardeen Cooper Schrieffer crossover. Observation of an elbow in measurements of the cloud width vs. atom number is consistent with populating only the lowest transverse harmonic oscillator state for weak attractive interactions. This measurement is extended to the strongly interacting region using the broad Feshbach resonance at 832 G. We also report our progress towards measurement of the 2D equation of state for an interacting 2D Fermi gas via in-situ absorption imaging.

  8. Collective excitations in 2D hard-disc fluid.

    PubMed

    Huerta, Adrian; Bryk, Taras; Trokhymchuk, Andrij

    2015-07-01

    Collective dynamics of a two-dimensional (2D) hard-disc fluid was studied by molecular dynamics simulations in the range of packing fractions that covers states up to the freezing. Some striking features concerning collective excitations in this system were observed. In particular, the short-wavelength shear waves while being absent at low packing fractions were observed in the range of high packing fractions, just before the freezing transition in a 2D hard-disc fluid. In contrast, the so-called "positive sound dispersion" typically observed in dense Lennard-Jones-like fluids, was not detected for the 2D hard-disc fluid. The ratio of specific heats in the 2D hard-disc fluid shows a monotonic increase with density approaching the freezing, resembling in this way the similar behavior in the vicinity of the Widom line in the case of supercritical fluids. PMID:25595625

  9. Alloyed 2D Metal-Semiconductor Atomic Layer Junctions.

    PubMed

    Kim, Ah Ra; Kim, Yonghun; Nam, Jaewook; Chung, Hee-Suk; Kim, Dong Jae; Kwon, Jung-Dae; Park, Sang Won; Park, Jucheol; Choi, Sun Young; Lee, Byoung Hun; Park, Ji Hyeon; Lee, Kyu Hwan; Kim, Dong-Ho; Choi, Sung Mook; Ajayan, Pulickel M; Hahm, Myung Gwan; Cho, Byungjin

    2016-03-01

    Heterostructures of compositionally and electronically variant two-dimensional (2D) atomic layers are viable building blocks for ultrathin optoelectronic devices. We show that the composition of interfacial transition region between semiconducting WSe2 atomic layer channels and metallic NbSe2 contact layers can be engineered through interfacial doping with Nb atoms. WxNb1-xSe2 interfacial regions considerably lower the potential barrier height of the junction, significantly improving the performance of the corresponding WSe2-based field-effect transistor devices. The creation of such alloyed 2D junctions between dissimilar atomic layer domains could be the most important factor in controlling the electronic properties of 2D junctions and the design and fabrication of 2D atomic layer devices. PMID:26839956

  10. Technical Review of the UNET2D Hydraulic Model

    SciTech Connect

    Perkins, William A.; Richmond, Marshall C.

    2009-05-18

    The Kansas City District of the US Army Corps of Engineers is engaged in a broad range of river management projects that require knowledge of spatially-varied hydraulic conditions such as velocities and water surface elevations. This information is needed to design new structures, improve existing operations, and assess aquatic habitat. Two-dimensional (2D) depth-averaged numerical hydraulic models are a common tool that can be used to provide velocity and depth information. Kansas City District is currently using a specific 2D model, UNET2D, that has been developed to meet the needs of their river engineering applications. This report documents a tech- nical review of UNET2D.

  11. Recent developments in 2D layered inorganic nanomaterials for sensing.

    PubMed

    Kannan, Padmanathan Karthick; Late, Dattatray J; Morgan, Hywel; Rout, Chandra Sekhar

    2015-08-28

    Two dimensional layered inorganic nanomaterials (2D-LINs) have recently attracted huge interest because of their unique thickness dependent physical and chemical properties and potential technological applications. The properties of these layered materials can be tuned via both physical and chemical processes. Some 2D layered inorganic nanomaterials like MoS2, WS2 and SnS2 have been recently developed and employed in various applications, including new sensors because of their layer-dependent electrical properties. This article presents a comprehensive overview of recent developments in the application of 2D layered inorganic nanomaterials as sensors. Some of the salient features of 2D materials for different sensing applications are discussed, including gas sensing, electrochemical sensing, SERS and biosensing, SERS sensing and photodetection. The working principles of the sensors are also discussed together with examples. PMID:26204797

  12. Chemical vapour deposition: Transition metal carbides go 2D

    NASA Astrophysics Data System (ADS)

    Gogotsi, Yury

    2015-11-01

    The unique properties of 2D materials, such as graphene or transition metal dichalcogenides, have been attracting much attention in the past decade. Now, metallically conductive and even superconducting transition metal carbides are entering the game.

  13. 2D Distribution of Forsterite and Enstatite in Protoplanetary Disks

    NASA Astrophysics Data System (ADS)

    Pignatale, F. C.; Maddison, S. T.; Liffman, K.; Brooks, G.

    2012-09-01

    Here we present the 2D distribution for forsterite and enstatite. The results provide insights on the origin of the crystalline grains seen in IR observation and provide clues on the bulk composition of rare object like enstatite-chondrites.

  14. Recent developments in 2D layered inorganic nanomaterials for sensing

    NASA Astrophysics Data System (ADS)

    Kannan, Padmanathan Karthick; Late, Dattatray J.; Morgan, Hywel; Rout, Chandra Sekhar

    2015-08-01

    Two dimensional layered inorganic nanomaterials (2D-LINs) have recently attracted huge interest because of their unique thickness dependent physical and chemical properties and potential technological applications. The properties of these layered materials can be tuned via both physical and chemical processes. Some 2D layered inorganic nanomaterials like MoS2, WS2 and SnS2 have been recently developed and employed in various applications, including new sensors because of their layer-dependent electrical properties. This article presents a comprehensive overview of recent developments in the application of 2D layered inorganic nanomaterials as sensors. Some of the salient features of 2D materials for different sensing applications are discussed, including gas sensing, electrochemical sensing, SERS and biosensing, SERS sensing and photodetection. The working principles of the sensors are also discussed together with examples.

  15. A community benchmark for viscoplastic thermal convection in a 2-D squared box

    NASA Astrophysics Data System (ADS)

    Tosi, Nicola; Stein, Claudia; Noack, Lena; Httig, Christian; Maierova, Petra; Samuel, Henri; Davies, Rhodri; Wilson, Cian; Kramer, Stephen; Thieulot, Cedric; Glerum, Anne; Fraters, Menno; Rozel, Antoine; Tackley, Paul

    2015-04-01

    Numerical simulations of thermal convection in the Earth's mantle often employ a pseudo-plastic rheology in order to mimic the plate-like behavior of the lithosphere. Yet the benchmark tests available in the literature are largely based on simple linear rheologies in which the viscosity is either assumed to be constant or weakly dependent on temperature. We present a suite of simple test cases based on non-linear rheologies featuring temperature-, pressure-, and strain-rate dependent viscosity. Eleven different codes based on the finite-volume, finite-element, or spectral method have been used to run five benchmark cases leading to stagnant lid, mobile lid, and periodic convection in a 2-D squared box. For two of these cases, we also show resolution tests from all contributing codes. In addition, we present a bifurcation analysis describing the transition from mobile lid to periodic regime and from periodic to stagnant lid regime in dependence of the yield stress. At a reference resolution of around 100 cells or elements in both vertical and horizontal directions, all codes reproduce the required diagnostic quantities with a discrepancy of at most ~3% in the presence of both linear and non-linear rheologies. Furthermore they all consistently predict the critical value of the yield stress at which the transition between different convective regimes occurs. As the most recent mantle convection codes are capable to handle a number of different domain geometries (2-D and 3-D, rectangular, cylindrical, and spherical) within a single solution framework, this benchmark is expected to be a useful tool to validate simulations of viscoplastic thermal convection also in geometries that are more complex and computationally demanding than a simple 2-D box.

  16. Anisotropic 2D Materials for Tunable Hyperbolic Plasmonics

    NASA Astrophysics Data System (ADS)

    Nemilentsau, Andrei; Low, Tony; Hanson, George

    2016-02-01

    Motivated by the recent emergence of a new class of anisotropic 2D materials, we examine their electromagnetic modes and demonstrate that a broad class of the materials can host highly directional hyperbolic plasmons. Their propagation direction can be manipulated on the spot by gate doping, enabling hyperbolic beam reflection, refraction, and bending. The realization of these natural 2D hyperbolic media opens up a new avenue in dynamic control of hyperbolic plasmons not possible in the 3D version.

  17. Phylogenetic tree construction based on 2D graphical representation

    NASA Astrophysics Data System (ADS)

    Liao, Bo; Shan, Xinzhou; Zhu, Wen; Li, Renfa

    2006-04-01

    A new approach based on the two-dimensional (2D) graphical representation of the whole genome sequence [Bo Liao, Chem. Phys. Lett., 401(2005) 196.] is proposed to analyze the phylogenetic relationships of genomes. The evolutionary distances are obtained through measuring the differences among the 2D curves. The fuzzy theory is used to construct phylogenetic tree. The phylogenetic relationships of H5N1 avian influenza virus illustrate the utility of our approach.

  18. RNA folding pathways and kinetics using 2D energy landscapes.

    PubMed

    Senter, Evan; Dotu, Ivan; Clote, Peter

    2015-01-01

    RNA folding pathways play an important role in various biological processes, such as (i) the hok/sok (host-killing/suppression of killing) system in E. coli to check for sufficient plasmid copy number, (ii) the conformational switch in spliced leader (SL) RNA from Leptomonas collosoma, which controls trans splicing of a portion of the '5 exon, and (iii) riboswitches--portions of the 5' untranslated region of messenger RNA that regulate genes by allostery. Since RNA folding pathways are determined by the energy landscape, we describe a novel algorithm, FFTbor2D, which computes the 2D projection of the energy landscape for a given RNA sequence. Given two metastable secondary structures A, B for a given RNA sequence, FFTbor2D computes the Boltzmann probability p(x, y) = Z(x,y)/Z that a secondary structure has base pair distance x from A and distance y from B. Using polynomial interpolationwith the fast Fourier transform,we compute p(x, y) in O(n(5)) time and O(n(2)) space, which is an improvement over an earlier method, which runs in O(n(7)) time and O(n(4)) space. FFTbor2D has potential applications in synthetic biology, where one might wish to design bistable switches having target metastable structures A, B with favorable pathway kinetics. By inverting the transition probability matrix determined from FFTbor2D output, we show that L. collosoma spliced leader RNA has larger mean first passage time from A to B on the 2D energy landscape, than 97.145% of 20,000 sequences, each having metastable structures A, B. Source code and binaries are freely available for download at http://bioinformatics.bc.edu/clotelab/FFTbor2D. The program FFTbor2D is implemented in C++, with optional OpenMP parallelization primitives. PMID:24515409

  19. Generating a 2D Representation of a Complex Data Structure

    NASA Technical Reports Server (NTRS)

    James, Mark

    2006-01-01

    A computer program, designed to assist in the development and debugging of other software, generates a two-dimensional (2D) representation of a possibly complex n-dimensional (where n is an integer >2) data structure or abstract rank-n object in that other software. The nature of the 2D representation is such that it can be displayed on a non-graphical output device and distributed by non-graphical means.

  20. Application of 2-D graphical representation of DNA sequence

    NASA Astrophysics Data System (ADS)

    Liao, Bo; Tan, Mingshu; Ding, Kequan

    2005-10-01

    Recently, we proposed a 2-D graphical representation of DNA sequence [Bo Liao, A 2-D graphical representation of DNA sequence, Chem. Phys. Lett. 401 (2005) 196-199]. Based on this representation, we consider properties of mutations and compute the similarities among 11 mitochondrial sequences belonging to different species. The elements of the similarity matrix are used to construct phylogenic tree. Unlike most existing phylogeny construction methods, the proposed method does not require multiple alignment.

  1. Computational Design of 2D materials for Energy Applications

    NASA Astrophysics Data System (ADS)

    Sun, Qiang

    2015-03-01

    Since the successful synthesis of graphene, tremendous efforts have been devoted to two-dimensional monolayers such as boron nitride (BN), silicene and MoS2. These 2D materials exhibit a large variety of physical and chemical properties with unprecedented applications. Here we report our recent studies of computational design of 2D materials for fuel cell applications which include hydrogen storage, CO2 capture, CO conversion and O2 reduction.

  2. Anisotropic 2D Materials for Tunable Hyperbolic Plasmonics.

    PubMed

    Nemilentsau, Andrei; Low, Tony; Hanson, George

    2016-02-12

    Motivated by the recent emergence of a new class of anisotropic 2D materials, we examine their electromagnetic modes and demonstrate that a broad class of the materials can host highly directional hyperbolic plasmons. Their propagation direction can be manipulated on the spot by gate doping, enabling hyperbolic beam reflection, refraction, and bending. The realization of these natural 2D hyperbolic media opens up a new avenue in dynamic control of hyperbolic plasmons not possible in the 3D version. PMID:26919007

  3. 2D microscopic model of graphene fracture properties

    NASA Astrophysics Data System (ADS)

    Hess, Peter

    2015-05-01

    An analytical two-dimensional (2D) microscopic fracture model based on Morse-type interaction is derived containing no adjustable parameter. From the 2D Youngs moduli and 2D intrinsic strengths of graphene measured by nanoindentation based on biaxial tension and calculated by density functional theory for uniaxial tension the widely unknown breaking force, line or edge energy, surface energy, fracture toughness, and strain energy release rate were determined. The simulated line energy agrees well with ab initio calculations and the fracture toughness of perfect graphene sheets is in good agreement with molecular dynamics simulations and the fracture toughness evaluated for defective graphene using the Griffith relation. Similarly, the estimated critical strain energy release rate agrees well with result of various theoretical approaches based on the J-integral and surface energy. The 2D microscopic model, connecting 2D and three-dimensional mechanical properties in a consistent way, provides a versatile relationship to easily access all relevant fracture properties of pristine 2D solids.

  4. Imperfect 2D phosphorus, yet an almost perfect semiconductor

    NASA Astrophysics Data System (ADS)

    Penev, Evgeni; Liu, Yuanyue; Xu, Fangbo; Zhang, Ziang; Yakobson, Boris

    2015-03-01

    The deep gap states created by defects in semiconductors typically deteriorate the performance of (opto)electronic devices. This has limited the applications of two-dimensional (2D) metal dichalcogenides (MX2) and underscored the need for a new 2D semiconductor without defect-induced deep gap states. The talk will discuss why a 2D mono-elemental semiconductor can be a promising candidate. This is exemplified by a first-principles study of 2D phosphorus (``phosphorene''), a recently fabricated high-mobility semiconductor. Most of the defects, including intrinsic point defects and grain boundaries, are electronically inactive, thanks to the homoelemental bonding, which is not preferred in heteroelemental system such as MX2. Unlike MX2, where the edges create deep gap states and cannot be eliminated by passivation, the edge states of 2D P can be removed from the band gap by hydrogen termination. It is further found that both the type and the concentration of charge carriers in 2D P can be tuned by doping with foreign atoms. The work sheds light on the role of defects on the electronic structure of low-dimensional materials in general. Present affiliation: NREL

  5. Proof in Transformation Geometry

    ERIC Educational Resources Information Center

    Bell, A. W.

    1971-01-01

    The first of three articles showing how inductively-obtained results in transformation geometry may be organized into a deductive system. This article discusses two approaches to enlargement (dilatation), one using coordinates and the other using synthetic methods. (MM)

  6. Gingerbread-House Geometry.

    ERIC Educational Resources Information Center

    Emenaker, Charles E.

    1999-01-01

    Describes a sixth-grade interdisciplinary geometry unit based on Charles Dickens's "A Christmas Carol". Focuses on finding area, volume, and perimeter, and working with estimation, decimals, and fractions in the context of making gingerbread houses. (ASK)

  7. Noncommutative Geometry and Physics

    NASA Astrophysics Data System (ADS)

    Connes, Alain

    2006-11-01

    In this very short essay we shall describe a "spectral" point of view on geometry which allows to start taking into account the lessons from both renormalization and of general relativity. We shall first do that for renormalization and explain in rough outline the content of our recent collaborations with Dirk Kreimer and Matilde Marcolli leading to the universal Galois symmetry of renormalizable quantum field theories provided by the renormalization group in its cosmic Galois group incarnation. As far as general relativity is concerned, since the functional integral cannot be treated in the traditional perturbative manner, it relies heavily as a "sum over geometries" on the chosen paradigm of geometric space. This will give us the occasion to discuss, in the light of noncommutative geometry, the issue of "observables" in gravity and our joint work with Ali Chamseddine on the spectral action, with a first attempt to write down a functional integral on the space of noncommutative geometries.

  8. What Is Geometry?

    ERIC Educational Resources Information Center

    Chern, Shiing-Shen

    1990-01-01

    Discussed are the major historical developments of geometry. Euclid, Descartes, Klein's Erlanger Program, Gaus and Riemann, globalization, topology, Elie Cartan, and an application to molecular biology are included as topics. (KR)

  9. d-geometries revisited

    NASA Astrophysics Data System (ADS)

    Ceresole, Anna; Ferrara, Sergio; Gnecchi, Alessandra; Marrani, Alessio

    2013-02-01

    We analyze some properties of the four dimensional supergravity theories which originate from five dimensions upon reduction. They generalize to N > 2 extended supersymmetries the d-geometries with cubic prepotentials, familiar from N = 2 special Khler geometry. We emphasize the role of a suitable parametrization of the scalar fields and the corresponding triangular symplectic basis. We also consider applications to the first order flow equations for non-BPS extremal black holes.

  10. Induced geometry from disformal transformation

    NASA Astrophysics Data System (ADS)

    Yuan, Fang-Fang; Huang, Peng

    2015-05-01

    In this note, we use the disformal transformation to induce a geometry from the manifold which is originally Riemannian. The new geometry obtained here can be considered as a generalization of Weyl integrable geometry. Based on these results, we further propose a geometry which is naturally a generalization of Weyl geometry.

  11. Common Geometry Module

    Energy Science and Technology Software Center (ESTSC)

    2005-01-01

    The Common Geometry Module (CGM) is a code library which provides geometry functionality used for mesh generation and other applications. This functionality includes that commonly found in solid modeling engines, like geometry creation, query and modification; CGM also includes capabilities not commonly found in solid modeling engines, like geometry decomposition tools and support for shared material interfaces. CGM is built upon the ACIS solid modeling engine, but also includes geometry capability developed beside and onmore » top of ACIS. CGM can be used as-is to provide geometry functionality for codes needing this capability. However, CGM can also be extended using derived classes in C++, allowing the geometric model to serve as the basis for other applications, for example mesh generation. CGM is supported on Sun Solaris, SGI, HP, IBM, DEC, Linux and Windows NT platforms. CGM also indudes support for loading ACIS models on parallel computers, using MPI-based communication. Future plans for CGM are to port it to different solid modeling engines, including Pro/Engineer or SolidWorks. CGM is being released into the public domain under an LGPL license; the ACIS-based engine is available to ACIS licensees on request.« less

  12. SOC and Fractal Geometry

    NASA Astrophysics Data System (ADS)

    McAteer, R. T. J.

    2013-06-01

    When Mandelbrot, the father of modern fractal geometry, made this seemingly obvious statement he was trying to show that we should move out of our comfortable Euclidean space and adopt a fractal approach to geometry. The concepts and mathematical tools of fractal geometry provides insight into natural physical systems that Euclidean tools cannot do. The benet from applying fractal geometry to studies of Self-Organized Criticality (SOC) are even greater. SOC and fractal geometry share concepts of dynamic n-body interactions, apparent non-predictability, self-similarity, and an approach to global statistics in space and time that make these two areas into naturally paired research techniques. Further, the iterative generation techniques used in both SOC models and in fractals mean they share common features and common problems. This chapter explores the strong historical connections between fractal geometry and SOC from both a mathematical and conceptual understanding, explores modern day interactions between these two topics, and discusses how this is likely to evolve into an even stronger link in the near future.

  13. Software Geometry in Simulations

    NASA Astrophysics Data System (ADS)

    Alion, Tyler; Viren, Brett; Junk, Tom

    2015-04-01

    The Long Baseline Neutrino Experiment (LBNE) involves many detectors. The experiment's near detector (ND) facility, may ultimately involve several detectors. The far detector (FD) will be significantly larger than any other Liquid Argon (LAr) detector yet constructed; many prototype detectors are being constructed and studied to motivate a plethora of proposed FD designs. Whether it be a constructed prototype or a proposed ND/FD design, every design must be simulated and analyzed. This presents a considerable challenge to LBNE software experts; each detector geometry must be described to the simulation software in an efficient way which allows for multiple authors to easily collaborate. Furthermore, different geometry versions must be tracked throughout their use. We present a framework called General Geometry Description (GGD), written and developed by LBNE software collaborators for managing software to generate geometries. Though GGD is flexible enough to be used by any experiment working with detectors, we present it's first use in generating Geometry Description Markup Language (GDML) files to interface with LArSoft, a framework of detector simulations, event reconstruction, and data analyses written for all LAr technology users at Fermilab. Brett is the other of the framework discussed here, the General Geometry Description (GGD).

  14. Almost but not quite 2D, Non-linear Bayesian Inversion of CSEM Data

    NASA Astrophysics Data System (ADS)

    Ray, A.; Key, K.; Bodin, T.

    2013-12-01

    The geophysical inverse problem can be elegantly stated in a Bayesian framework where a probability distribution can be viewed as a statement of information regarding a random variable. After all, the goal of geophysical inversion is to provide information on the random variables of interest - physical properties of the earth's subsurface. However, though it may be simple to postulate, a practical difficulty of fully non-linear Bayesian inversion is the computer time required to adequately sample the model space and extract the information we seek. As a consequence, in geophysical problems where evaluation of a full 2D/3D forward model is computationally expensive, such as marine controlled source electromagnetic (CSEM) mapping of the resistivity of seafloor oil and gas reservoirs, Bayesian studies have largely been conducted with 1D forward models. While the 1D approximation is indeed appropriate for exploration targets with planar geometry and geological stratification, it only provides a limited, site-specific idea of uncertainty in resistivity with depth. In this work, we extend our fully non-linear 1D Bayesian inversion to a 2D model framework, without requiring the usual regularization of model resistivities in the horizontal or vertical directions used to stabilize quasi-2D inversions. In our approach, we use the reversible jump Markov-chain Monte-Carlo (RJ-MCMC) or trans-dimensional method and parameterize the subsurface in a 2D plane with Voronoi cells. The method is trans-dimensional in that the number of cells required to parameterize the subsurface is variable, and the cells dynamically move around and multiply or combine as demanded by the data being inverted. This approach allows us to expand our uncertainty analysis of resistivity at depth to more than a single site location, allowing for interactions between model resistivities at different horizontal locations along a traverse over an exploration target. While the model is parameterized in 2D, we efficiently evaluate the forward response using 1D profiles extracted from the model at the common-midpoints of the EM source-receiver pairs. Since the 1D approximation is locally valid at different midpoint locations, the computation time is far lower than is required by a full 2D or 3D simulation. We have applied this method to both synthetic and real CSEM survey data from the Scarborough gas field on the Northwest shelf of Australia, resulting in a spatially variable quantification of resistivity and its uncertainty in 2D. This Bayesian approach results in a large database of 2D models that comprise a posterior probability distribution, which we can subset to test various hypotheses about the range of model structures compatible with the data. For example, we can subset the model distributions to examine the hypothesis that a resistive reservoir extends overs a certain spatial extent. Depending on how this conditions other parts of the model space, light can be shed on the geological viability of the hypothesis. Since tackling spatially variable uncertainty and trade-offs in 2D and 3D is a challenging research problem, the insights gained from this work may prove valuable for subsequent full 2D and 3D Bayesian inversions.

  15. Activatable Shiga toxin 2d (Stx2d) in STEC strains isolated from cattle and sheep at slaughter.

    PubMed

    Tasara, Taurai; Bielaszewska, Martina; Nitzsche, Sabine; Karch, Helge; Zweifel, Claudio; Stephan, Roger

    2008-09-18

    Shiga toxin producing Escherichia coli (STEC) harbouring the stx(2d-activatable) gene and expressing the mucus- and elastase-activatable phenotype have been associated with severe outcomes of human disease. However, there is limited data available on the occurrence of such strains in livestock reservoirs. In this study, we analyzed 11 STEC strains isolated from healthy cattle and sheep at slaughter that were originally detected to contain the stx(2c) allele, for the presence of the stx(2d-activatable) genotype. Ten of the eleven strains displayed the stx(2d-activatable) genotype as determine by PstI restriction fragment length polymorphism (RFLP) of 890-bp fragments of their stx genes. However, only in 6 of the 10 strains whose stx genes were sequenced, the presence of stx(2d-activatable) could be confirmed based on the predicted amino acid sequence of their StxA subunits; the remaining four strains contained Stx2c A subunit. Five of the six strains which contained stx(2d-activatable) displayed the activatable phenotype on Vero cells. Genes for adhesins such as the outer membrane protein intimin (eae), which is essential for the intimate attachment and the formation of attaching-and-effacing lesions on intestinal epithelial cells, or the STEC autoagglutinating adhesin (saa), potentially important in eae-negative STEC, were not detected. Moreover, all the strains tested negative for EHEC-hlyA encoding enterohaemorrhagic E. coli (EHEC) hemolysin. To our knowledge, this is the first study that reports the presence of STEC harbouring stx(2d-activatable) and producing the activatable Stx2d in fecal samples of sheep. Therefore both cattle and sheep are reservoirs of such strains and potential sources of human infections. This is of particular importance, because in contrast to other eae-negative STEC, strains producing Stx2d(activatable) may cause severe diseases such as bloody diarrhoea and haemolytic uremic syndrome in humans. PMID:18417300

  16. An automated pipeline to screen membrane protein 2D crystallization

    PubMed Central

    Kim, Changki; Vink, Martin; Hu, Minghui; Love, James; Stokes, David L.; Ubarretxena-Belandia, Iban

    2011-01-01

    Electron crystallography relies on electron cryomicroscopy of two-dimensional (2D) crystals and is particularly well suited for studying the structure of membrane proteins in their native lipid bilayer environment. To obtain 2D crystals from purified membrane proteins, the detergent in a protein-lipid-detergent ternary mixture must be removed, generally by dialysis, under conditions favoring reconstitution into proteoliposomes and formation of well-ordered lattices. To identify these conditions a wide range of parameters such as pH, lipid composition, lipid-to-protein ratio, ionic strength and ligands must be screened in a procedure involving four steps: crystallization, specimen preparation for electron microscopy, image acquisition, and evaluation. Traditionally, these steps have been carried out manually and, as a result, the scope of 2D crystallization trials has been limited. We have therefore developed an automated pipeline to screen the formation of 2D crystals. We employed a 96-well dialysis block for reconstitution of the target protein over a wide range of conditions designed to promote crystallization. A 96-position magnetic platform and a liquid handling robot were used to prepare negatively stained specimens in parallel. Robotic grid insertion into the electron microscope and computerized image acquisition ensures rapid evaluation of the crystallization screen. To date, 38 2D crystallization screens have been conducted for 15 different membrane proteins, totaling over 3000 individual crystallization experiments. Three of these proteins have yielded diffracting 2D crystals. Our automated pipeline outperforms traditional 2D crystallization methods in terms of throughput and reproducibility. PMID:20349145

  17. 2D and 3D ordered arrays of Co magnetic nanowires

    NASA Astrophysics Data System (ADS)

    Garcia, J.; Prida, V. M.; Vega, V.; Rosa, W. O.; Caballero-Flores, R.; Iglesias, L.; Hernando, B.

    2015-06-01

    Cobalt nanowire arrays spatially distributed in 2D and 3D arrangements have been performed by pulsed electrodeposition into the pores of planar and cylindrical nanoporous anodic alumina membranes, respectively. Morphological characterization points out the good filling factor reached by electroplated Co nanowires in both kinds of alumina membranes exhibiting hexagonally self-ordered porous structures. Co nanowires grown in both kinds of alumina templates exhibit the same crystalline phases. DC magnetometry and First Order Reversal Curve (FORC) analysis were carried out in order to determine the overall magnetic behavior for both nanowire array geometries. It is found that when the Co nanowires of two kinds of arrays are perpendicularly magnetized, both hysteresis loops are identical, suggesting that neither the intrinsic magnetic behavior of the nanowires nor the collective one depend on the arrays geometry. FORC analysis performed along the radial direction of the Co nanowire arrays embedded in the cylindrical alumina template reveals that the contribution of each nanowire to the magnetization reversal process involves its specific orientation with respect to the applied field direction. Furthermore, the comparison between the magnetic properties for both kinds of Co nanowire arrays allows discussing about the effect of the cylindrical geometry of the template on the magnetostatic interaction among nanowires.

  18. Integrable Background Geometries

    NASA Astrophysics Data System (ADS)

    Calderbank, David M. J.

    2014-03-01

    This work has its origins in an attempt to describe systematically the integrable geometries and gauge theories in dimensions one to four related to twistor theory. In each such dimension, there is a nondegenerate integrable geometric structure, governed by a nonlinear integrable differential equation, and each solution of this equation determines a background geometry on which, for any Lie group G, an integrable gauge theory is defined. In four dimensions, the geometry is selfdual conformal geometry and the gauge theory is selfdual Yang-Mills theory, while the lower-dimensional structures are nondegenerate (i.e., non-null) reductions of this. Any solution of the gauge theory on a k-dimensional geometry, such that the gauge group H acts transitively on an ?-manifold, determines a (k+?)-dimensional geometry (k+??4) fibering over the k-dimensional geometry with H as a structure group. In the case of an ?-dimensional group H acting on itself by the regular representation, all (k+?)-dimensional geometries with symmetry group H are locally obtained in this way. This framework unifies and extends known results about dimensional reductions of selfdual conformal geometry and the selfdual Yang-Mills equation, and provides a rich supply of constructive methods. In one dimension, generalized Nahm equations provide a uniform description of four pole isomonodromic deformation problems, and may be related to the {SU}(?) Toda and dKP equations via a hodograph transformation. In two dimensions, the {Diff}(S^1) Hitchin equation is shown to be equivalent to the hyperCR Einstein-Weyl equation, while the {SDiff}(?^2) Hitchin equation leads to a Euclidean analogue of Plebanski's heavenly equations. In three and four dimensions, the constructions of this paper help to organize the huge range of examples of Einstein-Weyl and selfdual spaces in the literature, as well as providing some new ! ones. The nondegenerate reductions have a long ancestry. More ! recently , degenerate or null reductions have attracted increased interest. Two of these reductions and their gauge theories (arguably, the two most significant) are also described.

  19. The value of 2D strain imaging during stress testing.

    PubMed

    Moonen, Marie; Lancellotti, Patrizio; Zacharakis, Dimitrios; Pierard, Luc

    2009-03-01

    Stress echocardiography is increasingly used but its major limitation is the subjective interpretation of wall motion changes requiring experience. Speckle tracking enables simultaneous evaluation of radial, longitudinal, and circumferential myocardial deformation. Recently, two-dimensional (2D) strain has been found to be as reliable as sonomicrometry for the assessment of left ventricular (LV) regional function. In the presence of inducible ischemia, longitudinal and circumferential abnormalities preceed the decrease in radial deformation. Optimal cutoffs have been obtained from 2D strain rate (SR) at peak dobutamine stress to predict coronary artery disease. However, 2D strain rate does not yet provide incremental accuracy to visual interpretation by experts. Speckle tracking strain could be useful to better identify contractile reverse and biphasic response of viable myocardium but there are not yet clinical studies published in this setting. Preliminary results suggest that 2D strain obtained during exercise could be useful in asymptomatic patients with severe aortic stenosis or organic mitral regurgitation (MR). In conclusion, the reliability and clinical importance of 2D strain during stress will be specified by further investigations. PMID:19291016

  20. Many-body interactions in atomically thin 2D materials

    NASA Astrophysics Data System (ADS)

    Chernikov, Alexey

    2015-03-01

    Since the discovery of graphene, a single sheet of carbon atoms, research focused on two-dimensional (2D) materials evolved rapidly due the availability of atomically thin, thermally stable, high-quality crystals with intriguing physical properties. The 2D materials naturally inherit major traits associated with systems of reduced dimensionality: strongly enhanced Coulomb interactions, efficient light-matter coupling, and sensitivity to the environment. In particular, the considerable strength of the Coulomb coupling between the charge carriers introduces a rich variety of many-body phenomena. In the class of 2D semiconductors, e.g., this leads to the emergence of strongly bound electron-hole quasi-particles, such as excitons, trions, and biexcitons, with unusually high binding energies and efficient light absorption. In this talk, I will present a study of the excitonic properties of 2D semiconductors, as exemplified in recent works on atomically thin transition metal dichalcogenides [1-4]. The observation of exciton binding energies on the order of 0.5 eV and the marked deviation of the exciton Rydberg series from the hydrogenic model will be discussed. The results reflect both strong carrier confinement and the distinctive nature of dielectric screening in atomically thin materials. I will further describe how carrier doping and strong photo-excitation can profoundly alter the many-body interactions in these 2D systems.

  1. Ultrafast 2D-IR spectroelectrochemistry of flavin mononucleotide

    NASA Astrophysics Data System (ADS)

    El Khoury, Youssef; Van Wilderen, Luuk J. G. W.; Bredenbeck, Jens

    2015-06-01

    We demonstrate the coupling of ultrafast two-dimensional infrared (2D-IR) spectroscopy to electrochemistry in solution and apply it to flavin mononucleotide, an important cofactor of redox proteins. For this purpose, we designed a spectroelectrochemical cell optimized for 2D-IR measurements in reflection and measured the time-dependent 2D-IR spectra of the oxidized and reduced forms of flavin mononucleotide. The data show anharmonic coupling and vibrational energy transfer between different vibrational modes in the two redox species. Such information is inaccessible with redox-controlled steady-state FTIR spectroscopy. The wide range of applications offered by 2D-IR spectroscopy, such as sub-picosecond structure determination, IR band assignment via energy transfer, disentangling reaction mixtures through band connectivity in the 2D spectra, and the measurement of solvation dynamics and chemical exchange can now be explored under controlled redox potential. The development of this technique furthermore opens new horizons for studying the dynamics of redox proteins.

  2. Growth and Characterization of Silicon at the 2D Limit

    NASA Astrophysics Data System (ADS)

    Mannix, Andrew; Kiraly, Brian; Hersam, Mark; Guisinger, Nathan

    2015-03-01

    Because bulk silicon has dominated the development of microelectronics over the past 50 years, the recent interest in two-dimensional (2D) materials (e.g., graphene, MoS2, phosphorene, etc.) naturally raises questions regarding the growth and properties of silicon at the 2D limit. Utilizing atomic-scale, ultra-high vacuum (UHV) scanning tunneling microscopy (STM), we have investigated the 2D limits of silicon growth on Ag(111). In agreement with previous reports of sp2-bonded silicene phases, we observe the temperature-dependent evolution of ordered 2D phases. However, we attribute these to apparent Ag-Si surface alloys. At sufficiently high silicon coverage, we observe the precipitation of crystalline, sp3-bonded Si(111) domains. These domains are capped with a ?3 honeycomb phase that is indistinguishable from the silver-induced ?3 honeycomb-chained-trimer reconstruction on bulk Si(111). Further ex-situcharacterization with Raman spectroscopy, atomic force microscopy, cross-sectional transmission electron microscopy, Raman spectroscopy, and X-ray photoelectron spectroscopy reveals that these sheets are ultrathin sheets of bulk-like, (111) oriented, sp3 silicon. Even at the 2D limit, scanning tunneling spectroscopy shows that these silicon nanosheets exhibit semiconducting electronic characteristics.

  3. Urinary metabolite quantification employing 2D NMR spectroscopy.

    PubMed

    Gronwald, Wolfram; Klein, Matthias S; Kaspar, Hannelore; Fagerer, Stephan R; Nürnberger, Nadine; Dettmer, Katja; Bertsch, Thomas; Oefner, Peter J

    2008-12-01

    Two-dimensional (2D) nuclear magnetic resonance (NMR) spectroscopy is a fairly novel method for the quantification of metabolites in biological fluids and tissue extracts. We show in this contribution that, compared to 1D 1H spectra, superior quantification of human urinary metabolites is obtained from 2D 1H-13C heteronuclear single-quantum correlation (HSQC) spectra measured at natural abundance. This was accomplished by the generation of separate calibration curves for the different 2D HSQC signals of each metabolite. Lower limits of detection were in the low to mid micromolar range and were generally the lower the greater the number of methyl groups contained in an analyte. The quantitative 2D NMR data obtained for a selected set of 17 urinary metabolites were compared to those obtained independently by means of gas chromatography-mass spectrometry and liquid chromatography-mass spectrometry of amino acids and hippurate as well as enzymatic and colorimetric measurements of creatinine. As a typical application, 2D-NMR was used for the investigation of urine from patients with inborn errors of metabolism. PMID:19551947

  4. Strings on bubbling geometries

    NASA Astrophysics Data System (ADS)

    Lin, Hai; Morisse, Alexander; Shock, Jonathan P.

    2010-06-01

    We study gauge theory operators which take the form of a product of a trace with a Schur polynomial, and their string theory duals. These states represent strings excited on bubbling AdS geometries which are dual to the Schur polynomials. These geometries generically take the form of multiple annuli in the phase space plane. We study the coherent state wavefunction of the lattice, which labels the trace part of the operator, for a general Young tableau and their dual description on the droplet plane with a general concentric ring pattern. In addition we identify a density matrix over the coherent states on all the geometries within a fixed constraint. This density matrix may be used to calculate the entropy of a given ensemble of operators. We finally recover the BMN string spectrum along the geodesic near any circle from the ansatz of the coherent state wave-function.

  5. Origins of cellular geometry

    PubMed Central

    2011-01-01

    Cells are highly complex and orderly machines, with defined shapes and a startling variety of internal organizations. Complex geometry is a feature of both free-living unicellular organisms and cells inside multicellular animals. Where does the geometry of a cell come from? Many of the same questions that arise in developmental biology can also be asked of cells, but in most cases we do not know the answers. How much of cellular organization is dictated by global cell polarity cues as opposed to local interactions between cellular components? Does cellular structure persist across cell generations? What is the relationship between cell geometry and tissue organization? What ensures that intracellular structures are scaled to the overall size of the cell? Cell biology is only now beginning to come to grips with these questions. PMID:21880160

  6. Geometry and Cloaking Devices

    NASA Astrophysics Data System (ADS)

    Ochiai, T.; Nacher, J. C.

    2011-09-01

    Recently, the application of geometry and conformal mappings to artificial materials (metamaterials) has attracted the attention in various research communities. These materials, characterized by a unique man-made structure, have unusual optical properties, which materials found in nature do not exhibit. By applying the geometry and conformal mappings theory to metamaterial science, it may be possible to realize so-called "Harry Potter cloaking device". Although such a device is still in the science fiction realm, several works have shown that by using such metamaterials it may be possible to control the direction of the electromagnetic field at will. We could then make an object hidden inside of a cloaking device. Here, we will explain how to design invisibility device using differential geometry and conformal mappings.

  7. 2D bifurcations and Newtonian properties of memristive Chua's circuits

    NASA Astrophysics Data System (ADS)

    Marszalek, W.; Podhaisky, H.

    2016-01-01

    Two interesting properties of Chua's circuits are presented. First, two-parameter bifurcation diagrams of Chua's oscillatory circuits with memristors are presented. To obtain various 2D bifurcation images a substantial numerical effort, possibly with parallel computations, is needed. The numerical algorithm is described first and its numerical code for 2D bifurcation image creation is available for free downloading. Several color 2D images and the corresponding 1D greyscale bifurcation diagrams are included. Secondly, Chua's circuits are linked to Newton's law ? ''= F(t,?,?')/m with ?=\\text{flux} , constant m > 0, and the force term F(t,?,?') containing memory terms. Finally, the jounce scalar equations for Chua's circuits are also discussed.

  8. 2D materials for photon conversion and nanophotonics

    NASA Astrophysics Data System (ADS)

    Tahersima, Mohammad H.; Sorger, Volker J.

    2015-09-01

    The field of two-dimensional (2D) materials has the potential to enable unique applications across a wide range of the electromagnetic spectrum. While 2D-layered materials hold promise for next-generation photon-conversion intrinsic limitations and challenges exist that shall be overcome. Here we discuss the intrinsic limitations as well as application opportunities of this new class of materials, and is sponsored by the NSF program Designing Materials to Revolutionize and Engineer our Future (DMREF) program, which links to the President's Materials Genome Initiative. We present general material-related details for photon conversion, and show that taking advantage of the mechanical flexibility of 2D materials by rolling MoS2/graphene/hexagonal boron nitride stack to a spiral solar cell allows for solar absorption up to 90%.

  9. Graphene based 2D-materials for supercapacitors

    NASA Astrophysics Data System (ADS)

    Palaniselvam, Thangavelu; Baek, Jong-Beom

    2015-09-01

    Ever-increasing energy demands and the depletion of fossil fuels are compelling humanity toward the development of suitable electrochemical energy conversion and storage devices to attain a more sustainable society with adequate renewable energy and zero environmental pollution. In this regard, supercapacitors are being contemplated as potential energy storage devices to afford cleaner, environmentally friendly energy. Recently, a great deal of attention has been paid to two-dimensional (2D) nanomaterials, including 2D graphene and its inorganic analogues (transition metal double layer hydroxides, chalcogenides, etc), as potential electrodes for the development of supercapacitors with high electrochemical performance. This review provides an overview of the recent progress in using these graphene-based 2D materials as potential electrodes for supercapacitors. In addition, future research trends including notable challenges and opportunities are also discussed.

  10. Static quasi-2D emulsion as a granular system

    NASA Astrophysics Data System (ADS)

    Wu, Rui; Orellana, Carlos; Hong, Xia; Desmond, Kenneth; Weeks, Eric

    2014-03-01

    We study the forces between emulsion droplets and the properties of force chains in a static oil-in-water emulsion system near jamming. The emulsion is confined between two parallel glass plates in order to construct a quasi-2D system. Quasi-2D emulsion systems are somewhat analogous to 2D granular disks, except for the absence of static friction between the droplets. We focus on samples at an area fraction ϕ that is higher than the jamming point, ϕc, and test the robustness of the power law dependence of pressure and the contact numbers on ϕ -ϕc . Specifically, we vary the surface tension by adding surfactants in the water, and examine the power law relationship under such variations. We also compare our result to simulations as well as established experimental results of true granular systems.

  11. Pseudo 2D random sampling for compressed sensing MRI.

    PubMed

    Wang, Haifeng; Liang, Dong; Ying, Leslie

    2009-01-01

    The paper presents a novel approach of pseudo 2D random sampling scheme for application of compressed sensing in Cartesian magnetic resonance imaging (MRI). The proposed scheme is realized by a pulse sequence program which switches the directions of phase encoding and frequency encoding during data acquisition such that both k(x) and k(y) directions can be undersampled randomly. The resulting random sampling pattern approximates the ideal but impractical 2D patterns. Both the simulation and experiment results show the proposed method is superior to the existing 1D random sampling and similar to the ideal 2D random sampling in terms of the reconstruction quality. This method can potentially improve the MR imaging speed through the application of compressed sensing in conventional MRI. PMID:19964588

  12. Students Discovering Spherical Geometry Using Dynamic Geometry Software

    ERIC Educational Resources Information Center

    Guven, Bulent; Karatas, Ilhan

    2009-01-01

    Dynamic geometry software (DGS) such as Cabri and Geometers' Sketchpad has been regularly used worldwide for teaching and learning Euclidean geometry for a long time. The DGS with its inductive nature allows students to learn Euclidean geometry via explorations. However, with respect to non-Euclidean geometries, do we need to introduce them to

  13. CYP2D44 polymorphisms in cynomolgus and rhesus macaques.

    PubMed

    Uno, Yasuhiro; Uehara, Shotaro; Kohara, Sakae; Osada, Naoki; Murayama, Norie; Yamazaki, Hiroshi

    2015-07-01

    Macaques, including cynomolgus and rhesus macaques, are important animal species used in drug metabolism studies. CYP2D44 is expressed in cynomolgus macaque liver and encodes a functional drug metabolizing enzyme, metabolizing typical human CYP2D substrates such as bufuralol and dextromethorphan. CYP2D44 is highly homologous to human CYP2D6 that is known to be polymorphic with a large inter-individual variation in metabolic activities, however, genetic polymorphisms have not been investigated in macaque CYP2D44. In the present study, screening of 78 cynomolgus and 40 rhesus macaques found a total of 67 variants, including 64 non-synonymous variants, 1 nonsense mutation, and 2 frameshift mutations, and 1 gene conversion, of which 14, 19, and 15 variants were unique to Indochinese cynomolgus macaques, Indonesian cynomolgus macaques, and Chinese rhesus macaques, respectively. Eleven of the 64 non-synonymous variants were located in substrate recognition sites, the regions important for protein function. By site-directed mutagenesis and metabolic assays, S175N, V185L, A235G, R242G, R245K, and N337D showed substantially decreased activity in bufuralol 1'-hydroxylation as compared with wild-type proteins. Moreover, two null alleles (c.128T>del and c.664G>T) were found in Indonesian cynomolgus macaques, but not in Indochinese cynomolgus macaques or Chinese rhesus macaques. These results suggest that genetic polymorphisms might account for the variability of CYP2D44-dependent metabolism in macaques. PMID:25682269

  14. Quantum computation as geometry.

    PubMed

    Nielsen, Michael A; Dowling, Mark R; Gu, Mile; Doherty, Andrew C

    2006-02-24

    Quantum computers hold great promise for solving interesting computational problems, but it remains a challenge to find efficient quantum circuits that can perform these complicated tasks. Here we show that finding optimal quantum circuits is essentially equivalent to finding the shortest path between two points in a certain curved geometry. By recasting the problem of finding quantum circuits as a geometric problem, we open up the possibility of using the mathematical techniques of Riemannian geometry to suggest new quantum algorithms or to prove limitations on the power of quantum computers. PMID:16497928

  15. Localized 2-D filter-based linear coherent noise attenuation.

    PubMed

    Lu, W

    2001-01-01

    A novel localized two-dimensional (2-D) filter is proposed. The proposed filter derived from the frequency-wavenumber filter and Radon transform filter, with the filtering operation applied at the stage of Fourier projection, has good local property and less filtering distortion. An example of the proposed method to attenuate linear coherent noise in a seismic image is given. Comparisons of the results between our method and the conventional 2-D filters (including frequency-wavenumber filter and Radon transform filter) show that the new method outperforms both frequency-wavenumber method and Radon transform method. PMID:18255552

  16. Experimental validation of equations for 2D DIC uncertainty quantification.

    SciTech Connect

    Reu, Phillip L.; Miller, Timothy J.

    2010-03-01

    Uncertainty quantification (UQ) equations have been derived for predicting matching uncertainty in two-dimensional image correlation a priori. These equations include terms that represent the image noise and image contrast. Researchers at the University of South Carolina have extended previous 1D work to calculate matching errors in 2D. These 2D equations have been coded into a Sandia National Laboratories UQ software package to predict the uncertainty for DIC images. This paper presents those equations and the resulting error surfaces for trial speckle images. Comparison of the UQ results with experimentally subpixel-shifted images is also discussed.

  17. Noninvasive deep Raman detection with 2D correlation analysis

    NASA Astrophysics Data System (ADS)

    Kim, Hyung Min; Park, Hyo Sun; Cho, Youngho; Jin, Seung Min; Lee, Kang Taek; Jung, Young Mee; Suh, Yung Doug

    2014-07-01

    The detection of poisonous chemicals enclosed in daily necessaries is prerequisite essential for homeland security with the increasing threat of terrorism. For the detection of toxic chemicals, we combined a sensitive deep Raman spectroscopic method with 2D correlation analysis. We obtained the Raman spectra from concealed chemicals employing spatially offset Raman spectroscopy in which incident line-shaped light experiences multiple scatterings before being delivered to inner component and yielding deep Raman signal. Furthermore, we restored the pure Raman spectrum of each component using 2D correlation spectroscopic analysis with chemical inspection. Using this method, we could elucidate subsurface component under thick powder and packed contents in a bottle.

  18. Spreading dynamics of 2D dipolar Langmuir monolayer phases.

    PubMed

    Heinig, P; Wurlitzer, S; Fischer, Th M

    2004-07-01

    We study the spreading of a liquid 2D dipolar droplet in a Langmuir monolayer. Interfacial tensions (line tensions) and microscopic contact angles depend on the scale on which they are probed and obey a scaling law. Assuming rapid equilibration of the microscopic contact angle and ideal slippage of the 2D solid/liquid and solid/gas boundary, the driving force of spreading is merely expressed by the shape-dependent long-range interaction integrals. We obtain good agreement between experiment and numerical simulations using this theory. PMID:15278693

  19. Quantum process tomography by 2D fluorescence spectroscopy

    SciTech Connect

    Pachón, Leonardo A.; Marcus, Andrew H.; Aspuru-Guzik, Alán

    2015-06-07

    Reconstruction of the dynamics (quantum process tomography) of the single-exciton manifold in energy transfer systems is proposed here on the basis of two-dimensional fluorescence spectroscopy (2D-FS) with phase-modulation. The quantum-process-tomography protocol introduced here benefits from, e.g., the sensitivity enhancement ascribed to 2D-FS. Although the isotropically averaged spectroscopic signals depend on the quantum yield parameter Γ of the doubly excited-exciton manifold, it is shown that the reconstruction of the dynamics is insensitive to this parameter. Applications to foundational and applied problems, as well as further extensions, are discussed.

  20. Thermodynamics of an Attractive 2D Fermi Gas

    NASA Astrophysics Data System (ADS)

    Fenech, K.; Dyke, P.; Peppler, T.; Lingham, M. G.; Hoinka, S.; Hu, H.; Vale, C. J.

    2016-01-01

    Thermodynamic properties of matter are conveniently expressed as functional relations between variables known as equations of state. Here we experimentally determine the compressibility, density, and pressure equations of state for an attractive 2D Fermi gas in the normal phase as a function of temperature and interaction strength. In 2D, interacting gases exhibit qualitatively different features to those found in 3D. This is evident in the normalized density equation of state, which peaks at intermediate densities corresponding to the crossover from classical to quantum behavior.

  1. On 2D bisection method for double eigenvalue problems

    SciTech Connect

    Ji, X.

    1996-06-01

    The two-dimensional bisection method presented in (SIAM J. Matrix Anal. Appl. 13(4), 1085 (1992)) is efficient for solving a class of double eigenvalue problems. This paper further extends the 2D bisection method of full matrix cases and analyses its stability. As in a single parameter case, the 2D bisection method is very stable for the tridiagonal matrix triples satisfying the symmetric-definite condition. Since the double eigenvalue problems arise from two-parameter boundary value problems, an estimate of the discretization error in eigenpairs is also given. Some numerical examples are included. 42 refs., 1 tab.

  2. On 2D Bisection Method for Double Eigenvalue Problems

    NASA Astrophysics Data System (ADS)

    Ji, Xingzhi

    1996-06-01

    The two-dimensional bisection method presented in (SIAM J. Matrix Anal. Appl. 13(4), 1085 (1992)) is efficient for solving a class of double eigenvalue problems. This paper further extends the 2D bisection method to full matrix cases and analyses its stablity. As in a single parameter case, the 2D bisection method is very stable for the tridiagonal matrix triples satisfying the symmetric-definite condition. Since the double eigenvalue problems arise from two-parameter boundary value problems, an estimate of the discretization error in eigenpairs is also given. Some numerical examples are included.

  3. CH2D+, the Search for the Holy Grail

    NASA Astrophysics Data System (ADS)

    Roueff, Evelyne; Gerin, Maryvonne; Lis, Dariusz C.; Wootten, Alwyn; Marcelino, Nuria; Cernicharo, Jose; Tercero, Belen

    2013-10-01

    CH2D+, the singly deuterated counterpart of CH3+, offers an alternative way to mediate formation of deuterated species at temperatures of several tens of Kelvin, as compared to the release of deuterated species from grains. We report a longstanding observational search for this molecular ion, whose rotational spectroscopy is not yet completely secure. We summarize the main spectroscopic properties of this molecule and discuss the chemical network leading to the formation of CH2D+, with explicit account of the ortho/para forms of H2, H3+, and CH3+. Astrochemical models support the presence of this molecular ion in moderately warm environments at a marginal level.

  4. 2dF grows up: Echidna for the AAT

    NASA Astrophysics Data System (ADS)

    McGrath, Andrew; Barden, Sam; Miziarski, Stan; Rambold, William; Smith, Greg

    2008-07-01

    We present the concept design of a new fibre positioner and spectrograph system for the Anglo-Australian Telescope, as a proposed enhancement to the Anglo-Australian Observatory's well-known 2dF facility. A four-fold multiplex enhancement is accomplished by replacing the 400-fibre 2dF fibre positioning robot with a 1600-fibre Echidna unit, feeding three clones of the AAOmega optical spectrograph. Such a facility has the capability of a redshift 1 survey of a large fraction of the southern sky, collecting five to ten thousand spectra per night for a million-galaxy survey.

  5. Design of the LRP airfoil series using 2D CFD

    NASA Astrophysics Data System (ADS)

    Zahle, Frederik; Bak, Christian; Sørensen, Niels N.; Vronsky, Tomas; Gaudern, Nicholas

    2014-06-01

    This paper describes the design and wind tunnel testing of a high-Reynolds number, high lift airfoil series designed for wind turbines. The airfoils were designed using direct gradient- based numerical multi-point optimization based on a Bezier parameterization of the shape, coupled to the 2D Navier-Stokes flow solver EllipSys2D. The resulting airfoils, the LRP2-30 and LRP2-36, achieve both higher operational lift coefficients and higher lift to drag ratios compared to the equivalent FFA-W3 airfoils.

  6. Thermodynamics of an Attractive 2D Fermi Gas.

    PubMed

    Fenech, K; Dyke, P; Peppler, T; Lingham, M G; Hoinka, S; Hu, H; Vale, C J

    2016-01-29

    Thermodynamic properties of matter are conveniently expressed as functional relations between variables known as equations of state. Here we experimentally determine the compressibility, density, and pressure equations of state for an attractive 2D Fermi gas in the normal phase as a function of temperature and interaction strength. In 2D, interacting gases exhibit qualitatively different features to those found in 3D. This is evident in the normalized density equation of state, which peaks at intermediate densities corresponding to the crossover from classical to quantum behavior. PMID:26871340

  7. The whereabouts of 2D gels in quantitative proteomics.

    PubMed

    Rabilloud, Thierry

    2012-01-01

    Two-dimensional gel electrophoresis has been instrumental in the development of proteomics. Although it is no longer the exclusive scheme used for proteomics, its unique features make it a still highly valuable tool, especially when multiple quantitative comparisons of samples must be made, and even for large samples series. However, quantitative proteomics using 2D gels is critically dependent on the performances of the protein detection methods used after the electrophoretic separations. This chapter therefore examines critically the various detection methods (radioactivity, dyes, fluorescence, and silver) as well as the data analysis issues that must be taken into account when quantitative comparative analysis of 2D gels is performed. PMID:22665291

  8. Radiative heat transfer in 2D Dirac materials

    DOE PAGESBeta

    Rodriguez-López, Pablo; Tse, Wang -Kong; Dalvit, Diego A. R.

    2015-05-12

    We compute the radiative heat transfer between two sheets of 2D Dirac materials, including topological Chern insulators and graphene, within the framework of the local approximation for the optical response of these materials. In this approximation, which neglects spatial dispersion, we derive both numerically and analytically the short-distance asymptotic of the near-field heat transfer in these systems, and show that it scales as the inverse of the distance between the two sheets. In conclusion, we discuss the limitations to the validity of this scaling law imposed by spatial dispersion in 2D Dirac materials.

  9. A novel improved method for analysis of 2D diffusion relaxation data—2D PARAFAC-Laplace decomposition

    NASA Astrophysics Data System (ADS)

    Tønning, Erik; Polders, Daniel; Callaghan, Paul T.; Engelsen, Søren B.

    2007-09-01

    This paper demonstrates how the multi-linear PARAFAC model can with advantage be used to decompose 2D diffusion-relaxation correlation NMR spectra prior to 2D-Laplace inversion to the T2- D domain. The decomposition is advantageous for better interpretation of the complex correlation maps as well as for the quantification of extracted T2- D components. To demonstrate the new method seventeen mixtures of wheat flour, starch, gluten, oil and water were prepared and measured with a 300 MHz nuclear magnetic resonance (NMR) spectrometer using a pulsed gradient stimulated echo (PGSTE) pulse sequence followed by a Carr-Purcell-Meiboom-Gill (CPMG) pulse echo train. By varying the gradient strength, 2D diffusion-relaxation data were recorded for each sample. From these double exponentially decaying relaxation data the PARAFAC algorithm extracted two unique diffusion-relaxation components, explaining 99.8% of the variation in the data set. These two components were subsequently transformed to the T2- D domain using 2D-inverse Laplace transformation and quantitatively assigned to the oil and water components of the samples. The oil component was one distinct distribution with peak intensity at D = 3 × 10 -12 m 2 s -1 and T2 = 180 ms. The water component consisted of two broad populations of water molecules with diffusion coefficients and relaxation times centered around correlation pairs: D = 10 -9 m 2 s -1, T2 = 10 ms and D = 3 × 10 -13 m 2 s -1, T2 = 13 ms. Small spurious peaks observed in the inverse Laplace transformation of original complex data were effectively filtered by the PARAFAC decomposition and thus considered artefacts from the complex Laplace transformation. The oil-to-water ratio determined by PARAFAC followed by 2D-Laplace inversion was perfectly correlated with known oil-to-water ratio of the samples. The new method of using PARAFAC prior to the 2D-Laplace inversion proved to have superior potential in analysis of diffusion-relaxation spectra, as it improves not only the interpretation, but also the quantification.

  10. Theory for spiralling ions for 2D FT-ICR and comparison with precessing magnetization vectors in 2D NMR.

    PubMed

    Sehgal, Akansha Ashvani; Pelupessy, Philippe; Rolando, Christian; Bodenhausen, Geoffrey

    2016-03-23

    Two-dimensional (2D) Fourier transform ion cyclotron resonance (FT-ICR) offers an approach to mass spectrometry (MS) that pursuits similar objectives as MS/MS experiments. While the latter must focus on one ion species at a time, 2D FT ICR can examine all possible correlations due to ion fragmentation in a single experiment: correlations between precursors, charged and neutral fragments. We revisited the original 2D FT-ICR experiment that has hitherto fallen short of stimulating significant analytical applications, probably because it is technically demanding. These shortcomings can now be overcome by improved FT-ICR instrumentation and computer hard- and software. We seek to achieve a better understanding of the intricacies of the behavior of ions during a basic two-dimensional ICR sequence comprising three simple monochromatic pulses. Through simulations based on Lorentzian equations, we have mapped the ion trajectories for different pulse durations and phases. PMID:26974979

  11. The Geometry of Viruses.

    ERIC Educational Resources Information Center

    Case, Christine L.

    1991-01-01

    Presented is an activity in which students make models of viruses, which allows them to visualize the shape of these microorganisms. Included are some background on viruses, the biology and geometry of viruses, directions for building viruses, a comparison of cells and viruses, and questions for students. (KR)

  12. GEOMETRY, TENTATIVE GUIDES.

    ERIC Educational Resources Information Center

    KLIER, KATHERINE M.

    PRESENTED IS A FUSED COURSE IN PLANE, SOLID, AND COORDINATE GEOMETRY. ELEMENTARY SET THEORY, LOGIC, AND THE PRINCIPLE OF SEPARATION PROVIDE UNIFYING THREADS THROUGHOUT THE TEXT. THE TWO CURRICULUM GUIDES HAVE BEEN PREPARED FOR USE WITH TWO DIFFERENT TEXTS. EITHER CURRICULUM GUIDE MAY BE USED DEPENDING UPON THE CHOICE OF THE TEACHER AND THE NEEDS

  13. Towards relativistic quantum geometry

    NASA Astrophysics Data System (ADS)

    Ridao, Luis Santiago; Bellini, Mauricio

    2015-12-01

    We obtain a gauge-invariant relativistic quantum geometry by using a Weylian-like manifold with a geometric scalar field which provides a gauge-invariant relativistic quantum theory in which the algebra of the Weylian-like field depends on observers. An example for a Reissner-Nordstrm black-hole is studied.

  14. Advanced geometries and regimes

    SciTech Connect

    Bulanov, S. S.; Bulanov, S. V.; Turchetti, G.; Limpouch, J.; Klimo, O.; Psikal, J.; Margarone, D.; Korn, G.

    2013-07-26

    We review and discuss different schemes of laser ion acceleration as well as advanced target geometries in connection with the development of the laser-driven proton source for hadron therapy of oncological diseases, which is a part of the ELIMED project.

  15. Sliding vane geometry turbines

    DOEpatents

    Sun, Harold Huimin; Zhang, Jizhong; Hu, Liangjun; Hanna, Dave R

    2014-12-30

    Various systems and methods are described for a variable geometry turbine. In one example, a turbine nozzle comprises a central axis and a nozzle vane. The nozzle vane includes a stationary vane and a sliding vane. The sliding vane is positioned to slide in a direction substantially tangent to an inner circumference of the turbine nozzle and in contact with the stationary vane.

  16. Gravity is Geometry.

    ERIC Educational Resources Information Center

    MacKeown, P. K.

    1984-01-01

    Clarifies two concepts of gravity--those of a fictitious force and those of how space and time may have geometry. Reviews the position of Newton's theory of gravity in the context of special relativity and considers why gravity (as distinct from electromagnetics) lends itself to Einstein's revolutionary interpretation. (JN)

  17. Algebraic Thinking and Geometry

    ERIC Educational Resources Information Center

    Grandau, Laura; Stephens, Ana C.

    2006-01-01

    This article describes how two middle school teachers incorporated algebraic thinking into their textbook-based geometry lessons. One teacher embedded algebraic concepts within an existing textbook lesson while the other teacher elicited algebraic thinking by extending a textbook lesson. (Contains 5 figures.)

  18. Listening to Geometry

    ERIC Educational Resources Information Center

    Cooper, Brett D.; Barger, Rita

    2009-01-01

    The many connections between music and mathematics are well known. The length of a plucked string determines its tone, the time signature of a piece of music is a ratio, and note durations are measured in fractions. One connection commonly overlooked is that between music and geometry--specifically, geometric transformations, including…

  19. Making Solid Geometry Solid.

    ERIC Educational Resources Information Center

    Hartz, Viggo

    1981-01-01

    Allowing students to use a polystyrene cutter to fashion their own three-dimensional models is suggested as a means of allowing individuals to experience problems and develop ideas related to solid geometry. A list of ideas that can lead to mathematical discovery is provided. (MP)

  20. Listening to Geometry

    ERIC Educational Resources Information Center

    Cooper, Brett D.; Barger, Rita

    2009-01-01

    The many connections between music and mathematics are well known. The length of a plucked string determines its tone, the time signature of a piece of music is a ratio, and note durations are measured in fractions. One connection commonly overlooked is that between music and geometry--specifically, geometric transformations, including

  1. Geoff Giles and Geometry

    ERIC Educational Resources Information Center

    Fielker, David

    2007-01-01

    Geoff Giles died suddenly in 2005. He was a highly original thinker in the field of geometry teaching. As early as 1964, when teaching at Strathallen School in Perth, he was writing in "MT27" about constructing tessellations by modifying the sides of triangles and (irregular) quadrilaterals to produce what he called "trisides" and "quadrisides".

  2. Geometry and physics

    PubMed Central

    Atiyah, Michael; Dijkgraaf, Robbert; Hitchin, Nigel

    2010-01-01

    We review the remarkably fruitful interactions between mathematics and quantum physics in the past decades, pointing out some general trends and highlighting several examples, such as the counting of curves in algebraic geometry, invariants of knots and four-dimensional topology. PMID:20123740

  3. Geometry of spinor regularization

    NASA Technical Reports Server (NTRS)

    Hestenes, D.; Lounesto, P.

    1983-01-01

    The Kustaanheimo theory of spinor regularization is given a new formulation in terms of geometric algebra. The Kustaanheimo-Stiefel matrix and its subsidiary condition are put in a spinor form directly related to the geometry of the orbit in physical space. A physically significant alternative to the KS subsidiary condition is discussed. Derivations are carried out without using coordinates.

  4. Creation of a scalar potential in 2D dilaton gravity

    SciTech Connect

    Behrndt, K.

    1994-09-01

    The authors investigate quantum corrections of the 2-d dilaton gravity near the singularity. Their motivation comes from a s-wave reduced cosmological solution which is classically singular in the scalar fields (dilaton and moduli). As a result they find, that the singularity disappears and a dilaton/moduli potential is created.

  5. Detection of N2D+ in a Protoplanetary Disk

    NASA Astrophysics Data System (ADS)

    Huang, Jane; berg, Karin I.

    2015-08-01

    Observations of deuterium fractionation in the solar system, and in interstellar and circumstellar material, are commonly used to constrain the formation environment of volatiles. Toward protoplanetary disks, this approach has been limited by the small number of detected deuterated molecules, i.e., DCO+ and DCN. Based on ALMA Cycle 2 observations toward the disk around the T Tauri star AS 209, we report the first detection of N2D+ (J = 3-2) in a protoplanetary disk. These data are used together with previous Submillimeter Array observations of N2H+ (J = 3-2) to estimate a disk-averaged D/H ratio of 0.3-0.5, an order of magnitude higher than disk-averaged ratios previously derived for DCN/HCN and DCO+/HCO+ around other young stars. The high fractionation in N2H+ is consistent with model predictions. The presence of abundant N2D+ toward AS 209 also suggests that N2D+ and the N2D+/N2H+ ratio can be developed into effective probes of deuterium chemistry, kinematics, and ionization processes outside the CO snow line of disks.

  6. Volume Calculation of Venous Thrombosis Using 2D Ultrasound Images.

    PubMed

    Dhibi, M; Puentes, J; Bressollette, L; Guias, B; Solaiman, B

    2005-01-01

    Venous thrombosis screening exams use 2D ultrasound images, from which medical experts obtain a rough idea of the thrombosis aspect and infer an approximate volume. Such estimation is essential to follow up the thrombosis evolution. This paper proposes a method to calculate venous thrombosis volume from non-parallel 2D ultrasound images, taking advantage of a priori knowledge about the thrombosis shape. An interactive ellipse fitting contour segmentation extracts the 2D thrombosis contours. Then, a Delaunay triangulation is applied to the set of 2D segmented contours positioned in 3D, and the area that each contour defines, to obtain a global thrombosis 3D surface reconstruction, with a dense triangulation inside the contours. Volume is calculated from the obtained surface and contours triangulation, using a maximum unit normal component approach. Preliminary results obtained on 3 plastic phantoms and 3 in vitro venous thromboses, as well as one in vivo case are presented and discussed. An error rate of volume estimation inferior to 4,5% for the plastic phantoms, and 3,5% for the in vitro venous thromboses was obtained. PMID:17281109

  7. 2-D Imaging of Electron Temperature in Tokamak Plasmas

    SciTech Connect

    T. Munsat; E. Mazzucato; H. Park; C.W. Domier; M. Johnson; N.C. Luhmann Jr.; J. Wang; Z. Xia; I.G.J. Classen; A.J.H. Donne; M.J. van de Pol

    2004-07-08

    By taking advantage of recent developments in millimeter wave imaging technology, an Electron Cyclotron Emission Imaging (ECEI) instrument, capable of simultaneously measuring 128 channels of localized electron temperature over a 2-D map in the poloidal plane, has been developed for the TEXTOR tokamak. Data from the new instrument, detailing the MHD activity associated with a sawtooth crash, is presented.

  8. ELLIPT2D: A Flexible Finite Element Code Written Python

    SciTech Connect

    Pletzer, A.; Mollis, J.C.

    2001-03-22

    The use of the Python scripting language for scientific applications and in particular to solve partial differential equations is explored. It is shown that Python's rich data structure and object-oriented features can be exploited to write programs that are not only significantly more concise than their counter parts written in Fortran, C or C++, but are also numerically efficient. To illustrate this, a two-dimensional finite element code (ELLIPT2D) has been written. ELLIPT2D provides a flexible and easy-to-use framework for solving a large class of second-order elliptic problems. The program allows for structured or unstructured meshes. All functions defining the elliptic operator are user supplied and so are the boundary conditions, which can be of Dirichlet, Neumann or Robbins type. ELLIPT2D makes extensive use of dictionaries (hash tables) as a way to represent sparse matrices.Other key features of the Python language that have been widely used include: operator over loading, error handling, array slicing, and the Tkinter module for building graphical use interfaces. As an example of the utility of ELLIPT2D, a nonlinear solution of the Grad-Shafranov equation is computed using a Newton iterative scheme. A second application focuses on a solution of the toroidal Laplace equation coupled to a magnetohydrodynamic stability code, a problem arising in the context of magnetic fusion research.

  9. 2D signature for detection and identification of drugs

    NASA Astrophysics Data System (ADS)

    Trofimov, Vyacheslav A.; Varentsova, Svetlana A.; Shen, Jingling; Zhang, Cunlin; Zhou, Qingli; Shi, Yulei

    2011-06-01

    The method of spectral dynamics analysis (SDA-method) is used for obtaining the2D THz signature of drugs. This signature is used for the detection and identification of drugs with similar Fourier spectra by transmitted THz signal. We discuss the efficiency of SDA method for the identification problem of pure methamphetamine (MA), methylenedioxyamphetamine (MDA), 3, 4-methylenedioxymethamphetamine (MDMA) and Ketamine.

  10. NKG2D ligands mediate immunosurveillance of senescent cells

    PubMed Central

    Moshayev, Zhana; Vadai, Ezra; Wensveen, Felix; Ben-Dor, Shifra; Golani, Ofra; Polic, Bojan; Krizhanovsky, Valery

    2016-01-01

    Cellular senescence is a stress response mechanism that limits tumorigenesis and tissue damage. Induction of cellular senescence commonly coincides with an immunogenic phenotype that promotes self-elimination by components of the immune system, thereby facilitating tumor suppression and limiting excess fibrosis during wound repair. The mechanisms by which senescent cells regulate their immune surveillance are not completely understood. Here we show that ligands of an activating Natural Killer (NK) cell receptor (NKG2D), MICA and ULBP2 are consistently up-regulated following induction of replicative senescence, oncogene-induced senescence and DNA damage - induced senescence. MICA and ULBP2 proteins are necessary for efficient NK-mediated cytotoxicity towards senescent fibroblasts. The mechanisms regulating the initial expression of NKG2D ligands in senescent cells are dependent on a DNA damage response, whilst continuous expression of these ligands is regulated by the ERK signaling pathway. In liver fibrosis, the accumulation of senescent activated stellate cells is increased in mice lacking NKG2D receptor leading to increased fibrosis. Overall, our results provide new insights into the mechanisms regulating the expression of immune ligands in senescent cells and reveal the importance of NKG2D receptor-ligand interaction in protecting against liver fibrosis. PMID:26878797

  11. ENVIRONMENTAL EFFECTS OF DREDGING AND DISPOSAL (E2-D2)

    EPA Science Inventory

    US Army Corps of Engineers public web site for the "Environmental Effects of Dredging and Disposal" ("E2-D2") searchable database of published reports and studies about environmental impacts associated with dredging and disposal operations. Many of the reports and studies are ava...

  12. Discrepant Results in a 2-D Marble Collision

    ERIC Educational Resources Information Center

    Kalajian, Peter

    2013-01-01

    Video analysis of 2-D collisions is an excellent way to investigate conservation of linear momentum. The often-desired experimental design goal is to minimize the momentum loss in order to demonstrate the conservation law. An air table with colliding pucks is an ideal medium for this experiment, but such equipment is beyond the budget of many

  13. Patterned Arrays of Lateral Heterojunctions within Monolayer 2D Semiconductors

    DOE PAGESBeta

    Mahjouri-Samani, Masoud; Lin, Ming-Wei; Wang, Kai; Lupini, Andrew R; Lee, Jaekwang; Basile Carrasco, Leonardo A; Rouleau, Christopher M; Boulesbaa, Abdelaziz; Puretzky, Alexander A; Ivanov, Ilia N; et al

    2015-01-01

    The formation of semiconductor heterojunctions and their high density integration are foundations of modern electronics and optoelectronics. To enable two-dimensional (2D) crystalline semiconductors as building blocks in next generation electronics, developing methods to deterministically form lateral heterojunctions is crucial. Here we demonstrate a process strategy for the formation of lithographically-patterned lateral semiconducting heterojunctions within a single 2D crystal. E-beam lithography is used to pattern MoSe2 monolayer crystals with SiO2, and the exposed locations are selectively and totally converted to MoS2 using pulsed laser deposition (PLD) of sulfur in order to form MoSe2/MoS2 heterojunctions in predefined patterns. The junctions and conversionmoreprocess are characterized by atomically resolved scanning transmission electron microscopy, photoluminescence, and Raman spectroscopy. This demonstration of lateral semiconductor heterojunction arrays within a single 2D crystal is an essential step for the lateral integration of 2D semiconductor building blocks with different electronic and optoelectronic properties for high-density, ultrathin circuitry.less

  14. Dispersionless 2D Toda hierarchy, Hurwitz numbers and Riemann theorem

    NASA Astrophysics Data System (ADS)

    Natanzon, Sergey M.

    2016-01-01

    We describe all formal symmetric solutions of dispersionless 2D Toda hierarchy. This classification we use for solving of two classical problems: 1) The calculation of conformal mapping of an arbitrary simply connected domain to the standard disk; 2) Calculation of 2- Hurwitz numbers of genus 0.

  15. Patterned Arrays of Lateral Heterojunctions within Monolayer 2D Semiconductors

    SciTech Connect

    Mahjouri-Samani, Masoud; Lin, Ming-Wei; Wang, Kai; Lupini, Andrew R; Lee, Jaekwang; Basile Carrasco, Leonardo A; Rouleau, Christopher M; Boulesbaa, Abdelaziz; Puretzky, Alexander A; Ivanov, Ilia N; Xiao, Kai; Yoon, Mina; Geohegan, David B

    2015-01-01

    The formation of semiconductor heterojunctions and their high density integration are foundations of modern electronics and optoelectronics. To enable two-dimensional (2D) crystalline semiconductors as building blocks in next generation electronics, developing methods to deterministically form lateral heterojunctions is crucial. Here we demonstrate a process strategy for the formation of lithographically-patterned lateral semiconducting heterojunctions within a single 2D crystal. E-beam lithography is used to pattern MoSe2 monolayer crystals with SiO2, and the exposed locations are selectively and totally converted to MoS2 using pulsed laser deposition (PLD) of sulfur in order to form MoSe2/MoS2 heterojunctions in predefined patterns. The junctions and conversion process are characterized by atomically resolved scanning transmission electron microscopy, photoluminescence, and Raman spectroscopy. This demonstration of lateral semiconductor heterojunction arrays within a single 2D crystal is an essential step for the lateral integration of 2D semiconductor building blocks with different electronic and optoelectronic properties for high-density, ultrathin circuitry.

  16. Discrepant Results in a 2-D Marble Collision

    ERIC Educational Resources Information Center

    Kalajian, Peter

    2013-01-01

    Video analysis of 2-D collisions is an excellent way to investigate conservation of linear momentum. The often-desired experimental design goal is to minimize the momentum loss in order to demonstrate the conservation law. An air table with colliding pucks is an ideal medium for this experiment, but such equipment is beyond the budget of many…

  17. Validation and testing of the VAM2D computer code

    SciTech Connect

    Kool, J.B.; Wu, Y.S. )

    1991-10-01

    This document describes two modeling studies conducted by HydroGeoLogic, Inc. for the US NRC under contract no. NRC-04089-090, entitled, Validation and Testing of the VAM2D Computer Code.'' VAM2D is a two-dimensional, variably saturated flow and transport code, with applications for performance assessment of nuclear waste disposal. The computer code itself is documented in a separate NUREG document (NUREG/CR-5352, 1989). The studies presented in this report involve application of the VAM2D code to two diverse subsurface modeling problems. The first one involves modeling of infiltration and redistribution of water and solutes in an initially dry, heterogeneous field soil. This application involves detailed modeling over a relatively short, 9-month time period. The second problem pertains to the application of VAM2D to the modeling of a waste disposal facility in a fractured clay, over much larger space and time scales and with particular emphasis on the applicability and reliability of using equivalent porous medium approach for simulating flow and transport in fractured geologic media. Reflecting the separate and distinct nature of the two problems studied, this report is organized in two separate parts. 61 refs., 31 figs., 9 tabs.

  18. 2D vector Preisach models and rotational hysteretic losses

    SciTech Connect

    Mayergoyz, I.D. )

    1994-05-15

    Depending on the physical nature of hysteresis, rotational hysteretic losses in isotropic materials may decrease to zero or even continuously increase with the increase in the magnitude of uniformly rotating magnetic fields. It is shown in the paper that recently developed 2D Preisach models of vector hysteresis accommodate this broad spectrum of behavior of rotational hysteretic losses.

  19. ADVANCES IN 2-D CORRELATION IN NIR SPECTROSCOPY

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Two-dimensional (2-D) vibrational correlation spectroscopy has now advanced to the stage of realizing many of its touted advantages. Those advantages primarily are: elucidation of chemical interactions of functional groups, simplification of complex spectra, enhancement of spectral resolution by sp...

  20. Flood hazard assessment using 1D and 2D approaches

    NASA Astrophysics Data System (ADS)

    Petaccia, Gabriella; Costabile, Pierfranco; Macchione, Francesco; Natale, Luigi

    2013-04-01

    The EU flood risk Directive (Directive 2007/60/EC) prescribes risk assessment and mapping to develop flood risk management plans. Flood hazard mapping may be carried out with mathematical models able to determine flood-prone areas once realistic conditions (in terms of discharge or water levels) are imposed at the boundaries of the case study. The deterministic models are mainly based on shallow water equations expressed in their 1D or 2D formulation. The 1D approach is widely used, especially in technical studies, due to its relative simplicity, its computational efficiency and also because it requires topographical data not as expensive as the ones needed by 2D models. Even if in a great number of practical situations, such as modeling in-channel flows and not too wide floodplains, the 1D approach may provide results close to the prediction of a more sophisticated 2D model, it must be pointed out that the correct use of a 1D model in practical situations is more complex than it may seem. The main issues to be correctly modeled in a 1D approach are the definition of hydraulic structures such as bridges and buildings interacting with the flow and the treatment of the tributaries. Clearly all these aspects have to be taken into account also in the 2D modeling, but with fewer difficulties. The purpose of this paper is to show how the above cited issues can be described using a 1D or 2D unsteady flow modeling. In particular the Authors will show the devices that have to be implemented in 1D modeling to get reliable predictions of water levels and discharges comparable to the ones obtained using a 2D model. Attention will be focused on an actual river (Crati river) located in the South of Italy. This case study is quite complicated since it deals with the simulation of channeled flows, overbank flows, interactions with buildings, bridges and tributaries. Accurate techniques, intentionally developed by the Authors to take into account all these peculiarities in 1D and 2D modeling, will be presented, compared and discussed.

  1. The NH2D hyperfine structure revealed by astrophysical observations

    NASA Astrophysics Data System (ADS)

    Daniel, F.; Coudert, L. H.; Punanova, A.; Harju, J.; Faure, A.; Roueff, E.; Sipilä, O.; Caselli, P.; Güsten, R.; Pon, A.; Pineda, J. E.

    2016-02-01

    Context. The 111-101 lines of ortho- and para-NH2D (o/p-NH2D) at 86 and 110 GHz, respectively, are commonly observed to provide constraints on the deuterium fractionation in the interstellar medium. In cold regions, the hyperfine structure that is due to the nitrogen (14N) nucleus is resolved. To date, this splitting is the only one that is taken into account in the NH2D column density estimates. Aims: We investigate how including the hyperfine splitting caused by the deuterium (D) nucleus affects the analysis of the rotational lines of NH2D. Methods: We present 30 m IRAM observations of the above mentioned lines and APEX o/p-NH2D observations of the 101-000 lines at 333 GHz. The hyperfine patterns of the observed lines were calculated taking into account the splitting induced by the D nucleus. The analysis then relies on line lists that either neglect or include the splitting induced by the D nucleus. Results: The hyperfine spectra are first analyzed with a line list that only includes the hyperfine splitting that is due to the 14N nucleus. We find inconsistencies between the line widths of the 101-000 and 111-101 lines, the latter being larger by a factor of ~1.6 ± 0.3. Such a large difference is unexpected because the two sets of lines probably originate from the same region. We next employed a newly computed line list for the o/p-NH2D transitions where the hyperfine structure induced by both nitrogen and deuterium nuclei was included. With this new line list, the analysis of the previous spectra leads to compatible line widths. Conclusions: Neglecting the hyperfine structure caused by D leads to overestimating the line widths of the o/p-NH2D lines at 3 mm. The error for a cold molecular core is about 50%. This error propagates directly to the column density estimate. We therefore recommend to take the hyperfine splittings caused by both the 14N and D nuclei into account in any analysis that relies on these lines. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

  2. Toward an Efficient Icing CFD Process Using an Interactive Software Toolkit--SmaggIce 2D

    NASA Technical Reports Server (NTRS)

    Vickerman, Mary B.; Choo, Yung K.; Schilling, Herbert W.; Baez, Marivell; Braun, Donald C.; Cotton, Barbara J.

    2002-01-01

    Two-dimensional CFD analysis for iced airfoils can be a labor-intensive task. The software toolkit SmaggIce 2D is being developed to help streamline the CFD process and provide the unique features needed for icing. When complete, it will include a combination of partially automated and fully interactive tools for all aspects of the tasks leading up to the flow analysis: geometry preparation, domain decomposition, block boundary discretization. gridding, and linking with a flow solver. It also includes tools to perform ice shape characterization, an important aid in determining the relationship between ice characteristics and their effects on aerodynamic performance. Completed tools, work-in-progress, and planned features of the software toolkit are presented here.

  3. Influence of lattice defects on the ferromagnetic resonance behaviour of 2D magnonic crystals

    NASA Astrophysics Data System (ADS)

    Manzin, Alessandra; Barrera, Gabriele; Celegato, Federica; Coïsson, Marco; Tiberto, Paola

    2016-02-01

    This paper studies, from a modelling point of view, the influence of randomly distributed lattice defects (non-patterned areas and variable hole size) on the ferromagnetic resonance behaviour and spin wave mode profiles of 2D magnonic crystals based on Ni80Fe20 antidot arrays with hexagonal lattice. A reference sample is first defined via the comparison of experimental and simulated hysteresis loops and magnetoresistive curves of patterned films, prepared by self-assembly of polystyrene nanospheres. Second, a parametric analysis of the dynamic response is performed, investigating how edge, quasi-uniform and localized modes are affected by alterations of the lattice geometry and bias field amplitude. Finally, some results about the possible use of magnetic antidot arrays in frequency-based sensors for magnetic bead detection are presented, highlighting the need for an accurate control of microstructural features.

  4. Influence of lattice defects on the ferromagnetic resonance behaviour of 2D magnonic crystals.

    PubMed

    Manzin, Alessandra; Barrera, Gabriele; Celegato, Federica; Cosson, Marco; Tiberto, Paola

    2016-01-01

    This paper studies, from a modelling point of view, the influence of randomly distributed lattice defects (non-patterned areas and variable hole size) on the ferromagnetic resonance behaviour and spin wave mode profiles of 2D magnonic crystals based on Ni80Fe20 antidot arrays with hexagonal lattice. A reference sample is first defined via the comparison of experimental and simulated hysteresis loops and magnetoresistive curves of patterned films, prepared by self-assembly of polystyrene nanospheres. Second, a parametric analysis of the dynamic response is performed, investigating how edge, quasi-uniform and localized modes are affected by alterations of the lattice geometry and bias field amplitude. Finally, some results about the possible use of magnetic antidot arrays in frequency-based sensors for magnetic bead detection are presented, highlighting the need for an accurate control of microstructural features. PMID:26911336

  5. Phase Mixing of Alfvn Waves Near a 2D Magnetic Null Point

    NASA Astrophysics Data System (ADS)

    McLaughlin, J. A.

    2013-09-01

    The propagation of linear Alfvn wave pulses in an inhomogeneous plasma near a 2D coronal null point is investigated. When a uniform plasma density is considered, it is seen that an initially planar Alfvn wavefront remains planar, despite the varying equilibrium Alfvn speed, and that all the wave collects at the separatrices. Thus, in the non-ideal case, these Alfvnic disturbances preferentially dissipate their energy at these locations. For a non-uniform equilibrium density, it is found that the Alfvn wavefront is significantly distorted away from the initially planar geometry, inviting the possibility of dissipation due to phase mixing. Despite this however, we conclude that for the Alfvn wave, current density accumulation and preferential heating still primarily occur at the separatrices, even when an extremely non-uniform density profile is considered.

  6. CYP 2D6 Binding Affinity Predictions Using Multiple Ligand and Protein Conformations

    PubMed Central

    Peri?-Hassler, Lovorka; Stjernschantz, Eva; Oostenbrink, Chris; Geerke, Daan P.

    2013-01-01

    Because of the large flexibility and malleability of Cytochrome P450 enzymes (CYPs), in silico prediction of CYP binding affinities to drugs and other xenobiotic compounds is a true challenge. In the current work, we use an iterative linear interaction energy (LIE) approach to compute CYP binding affinities from molecular dynamics (MD) simulation. In order to improve sampling of conformational space, we combine results from simulations starting with different relevant protein-ligand geometries. For calculated binding free energies of a set of thiourea compounds binding to the flexible CYP 2D6 isoform, improved correlation with experiment was obtained by combining results ofMDruns starting from distinct protein conformations and ligand-binding orientations. This accuracy was obtained from relatively short MD simulations, which makes our approach computationally attractive for automated calculations of ligand-binding affinities to flexible proteins such as CYPs. PMID:24351831

  7. From 2D to 3D: novel nanostructured scaffolds to investigate signalling in reconstructed neuronal networks.

    PubMed

    Bosi, Susanna; Rauti, Rossana; Laishram, Jummi; Turco, Antonio; Lonardoni, Davide; Nieus, Thierry; Prato, Maurizio; Scaini, Denis; Ballerini, Laura

    2015-01-01

    To recreate in vitro 3D neuronal circuits will ultimately increase the relevance of results from cultured to whole-brain networks and will promote enabling technologies for neuro-engineering applications. Here we fabricate novel elastomeric scaffolds able to instruct 3D growth of living primary neurons. Such systems allow investigating the emerging activity, in terms of calcium signals, of small clusters of neurons as a function of the interplay between the 2D or 3D architectures and network dynamics. We report the ability of 3D geometry to improve functional organization and synchronization in small neuronal assemblies. We propose a mathematical modelling of network dynamics that supports such a result. Entrapping carbon nanotubes in the scaffolds remarkably boosted synaptic activity, thus allowing for the first time to exploit nanomaterial/cell interfacing in 3D growth support. Our 3D system represents a simple and reliable construct, able to improve the complexity of current tissue culture models. PMID:25910072

  8. Toward an Efficient Icing CFD Process Using an Interactive Software Toolkit: Smagglce 2D

    NASA Technical Reports Server (NTRS)

    Vickerman, Mary B.; Choo, Yung K.; Schilling, Herbert W.; Baez, Marivell; Braun, Donald C.; Cotton, Barbara J.

    2001-01-01

    Two-dimensional CID analysis for iced airfoils can be a labor-intensive task. The software toolkit SmaggIce 2D is being developed to help streamline the CID process and provide the unique features needed for icing. When complete, it will include a combination of partially automated and fully interactive tools for all aspects of the tasks leading up to the flow analysis: geometry preparation, domain decomposition. block boundary demoralization. gridding, and linking with a flow solver. It also includes tools to perform ice shape characterization, an important aid in determining the relationship between ice characteristics and their effects on aerodynamic performance. Completed tools, work-in-progress, and planned features of the software toolkit are presented here.

  9. 2D full wave modeling for a synthetic Doppler backscattering diagnostic

    SciTech Connect

    Hillesheim, J. C.; Schmitz, L.; Kubota, S.; Rhodes, T. L.; Carter, T. A.; Holland, C.

    2012-10-15

    Doppler backscattering (DBS) is a plasma diagnostic used in tokamaks and other magnetic confinement devices to measure the fluctuation level of intermediate wavenumber (k{sub {theta}}{rho}{sub s}{approx} 1) density fluctuations and the lab frame propagation velocity of turbulence. Here, a synthetic DBS diagnostic is described, which has been used for comparisons between measurements in the DIII-D tokamak and predictions from nonlinear gyrokinetic simulations. To estimate the wavenumber range to which a Gaussian beam would be sensitive, a ray tracing code and a 2D finite difference, time domain full wave code are used. Experimental density profiles and magnetic geometry are used along with the experimental antenna and beam characteristics. An example of the effect of the synthetic diagnostic on the output of a nonlinear gyrokinetic simulation is presented.

  10. Study of the mechanical behavior of a 2-D carbon-carbon composite

    NASA Technical Reports Server (NTRS)

    Avery, W. B.; Herakovich, C. T.

    1987-01-01

    The out-of-plane fracture of a 2-D carbon-carbon composite was observed and characterized to gain an understanding of the factors influencing the stress distribution in such a laminate. Finite element analyses of a two-ply carbon-carbon composite under in-plane, out-of-plane, and thermal loading were performed. Under in-plane loading all components of stress were strong functions of geometry. Additionally, large thermal stresses were predicted. Out-of-plane tensile tests revealed that failure was interlaminar, and that cracks propagated along the fiber-matrix interface. An elasticity solution was utilized to analyze an orthotropic fiber in an isotropic matrix under uniform thermal load. The analysis reveals that the stress distributions in a transversely orthotropic fiber are radically different than those predicted assuming the fiber to be transversely isotropic.

  11. Influence of lattice defects on the ferromagnetic resonance behaviour of 2D magnonic crystals

    PubMed Central

    Manzin, Alessandra; Barrera, Gabriele; Celegato, Federica; Coïsson, Marco; Tiberto, Paola

    2016-01-01

    This paper studies, from a modelling point of view, the influence of randomly distributed lattice defects (non-patterned areas and variable hole size) on the ferromagnetic resonance behaviour and spin wave mode profiles of 2D magnonic crystals based on Ni80Fe20 antidot arrays with hexagonal lattice. A reference sample is first defined via the comparison of experimental and simulated hysteresis loops and magnetoresistive curves of patterned films, prepared by self-assembly of polystyrene nanospheres. Second, a parametric analysis of the dynamic response is performed, investigating how edge, quasi-uniform and localized modes are affected by alterations of the lattice geometry and bias field amplitude. Finally, some results about the possible use of magnetic antidot arrays in frequency-based sensors for magnetic bead detection are presented, highlighting the need for an accurate control of microstructural features. PMID:26911336

  12. An Integrative Model of Excitation Driven Fluid Flow in a 2D Uterine Channel

    NASA Astrophysics Data System (ADS)

    Maggio, Charles; Fauci, Lisa; Chrispell, John

    2009-11-01

    We present a model of intra-uterine fluid flow in a sagittal cross-section of the uterus by inducing peristalsis in a 2D channel. This is an integrative multiscale computational model that takes as input fluid viscosity, passive tissue properties of the uterine channel and a prescribed wave of membrane depolarization. This voltage pulse is coupled to a model of calcium dynamics inside a uterine smooth muscle cell, which in turn drives a kinetic model of myosin phosphorylation governing contractile muscle forces. Using the immersed boundary method, these muscle forces are communicated to a fluid domain to simulate the contractions which occur in a human uterus. An analysis of the effects of model parameters on the flow properties and emergent geometry of the peristaltic channel will be presented.

  13. Experimental results for film cooling in 2-D supersonic flow including coolant delivery pressure, geometry, and incident shock effects

    NASA Technical Reports Server (NTRS)

    Olsen, George C.; Nowak, Robert J.; Holden, Michael S.; Baker, N. R.

    1990-01-01

    An experimental program was conducted to establish some design parameters important to a supersonic film cooling system in a scramjet engine. A simple non-combusting two-dimensional flow configuration was used to isolate the film cooling phenomena. Parameters investigated include coolant delivery pressure, slot height and lip thickness, and incident shock location and strength. Design guidelines for use in engineering and trade studies are presented.

  14. COMPARISON OF THE ACCURACY OF VARIOUS SPATIAL DISCRETIZATION SCHEMES OF THE DISCRETE ORDINATES EQUATIONS IN 2D CARTESIAN GEOMETRY

    SciTech Connect

    Sebastian Schunert; Yousry Y. Azmy; Damien Fournier

    2011-05-01

    We present a comprehensive error estimation of four spatial discretization schemes of the two-dimensional Discrete Ordinates (SN) equations on Cartesian grids utilizing a Method of Manufactured Solution (MMS) benchmark suite based on variants of Larsen’s benchmark featuring different orders of smoothness of the underlying exact solution. The considered spatial discretization schemes include the arbitrarily high order transport methods of the nodal (AHOTN) and characteristic (AHOTC) types, the discontinuous Galerkin Finite Element method (DGFEM) and the recently proposed higher order diamond difference method (HODD) of spatial expansion orders 0 through 3. While AHOTN and AHOTC rely on approximate analytical solutions of the transport equation within a mesh cell, DGFEM and HODD utilize a polynomial expansion to mimick the angular flux profile across each mesh cell. Intuitively, due to the higher degree of analyticity, we expect AHOTN and AHOTC to feature superior accuracy compared with DGFEM and HODD, but at the price of potentially longer grind times and numerical instabilities. The latter disadvantages can result from the presence of exponential terms evaluated at the cell optical thickness that arise from the semianalytical solution process. This work quantifies the order of accuracy and the magnitude of the error of all four discretization methods for different optical thicknesses, scattering ratios and degrees of smoothness of the underlying exact solutions in order to verify or contradict the aforementioned intuitive expectation.

  15. ARC2D - EFFICIENT SOLUTION METHODS FOR THE NAVIER-STOKES EQUATIONS (CRAY VERSION)

    NASA Technical Reports Server (NTRS)

    Pulliam, T. H.

    1994-01-01

    ARC2D is a computational fluid dynamics program developed at the NASA Ames Research Center specifically for airfoil computations. The program uses implicit finite-difference techniques to solve two-dimensional Euler equations and thin layer Navier-Stokes equations. It is based on the Beam and Warming implicit approximate factorization algorithm in generalized coordinates. The methods are either time accurate or accelerated non-time accurate steady state schemes. The evolution of the solution through time is physically realistic; good solution accuracy is dependent on mesh spacing and boundary conditions. The mathematical development of ARC2D begins with the strong conservation law form of the two-dimensional Navier-Stokes equations in Cartesian coordinates, which admits shock capturing. The Navier-Stokes equations can be transformed from Cartesian coordinates to generalized curvilinear coordinates in a manner that permits one computational code to serve a wide variety of physical geometries and grid systems. ARC2D includes an algebraic mixing length model to approximate the effect of turbulence. In cases of high Reynolds number viscous flows, thin layer approximation can be applied. ARC2D allows for a variety of solutions to stability boundaries, such as those encountered in flows with shocks. The user has considerable flexibility in assigning geometry and developing grid patterns, as well as in assigning boundary conditions. However, the ARC2D model is most appropriate for attached and mildly separated boundary layers; no attempt is made to model wake regions and widely separated flows. The techniques have been successfully used for a variety of inviscid and viscous flowfield calculations. The Cray version of ARC2D is written in FORTRAN 77 for use on Cray series computers and requires approximately 5Mb memory. The program is fully vectorized. The tape includes variations for the COS and UNICOS operating systems. Also included is a sample routine for CONVEX computers to emulate Cray system time calls, which should be easy to modify for other machines as well. The standard distribution media for this version is a 9-track 1600 BPI ASCII Card Image format magnetic tape. The Cray version was developed in 1987. The IBM ES/3090 version is an IBM port of the Cray version. It is written in IBM VS FORTRAN and has the capability of executing in both vector and parallel modes on the MVS/XA operating system and in vector mode on the VM/XA operating system. Various options of the IBM VS FORTRAN compiler provide new features for the ES/3090 version, including 64-bit arithmetic and up to 2 GB of virtual addressability. The IBM ES/3090 version is available only as a 9-track, 1600 BPI IBM IEBCOPY format magnetic tape. The IBM ES/3090 version was developed in 1989. The DEC RISC ULTRIX version is a DEC port of the Cray version. It is written in FORTRAN 77 for RISC-based Digital Equipment platforms. The memory requirement is approximately 7Mb of main memory. It is available in UNIX tar format on TK50 tape cartridge. The port to DEC RISC ULTRIX was done in 1990. COS and UNICOS are trademarks and Cray is a registered trademark of Cray Research, Inc. IBM, ES/3090, VS FORTRAN, MVS/XA, and VM/XA are registered trademarks of International Business Machines. DEC and ULTRIX are registered trademarks of Digital Equipment Corporation.

  16. ARC2D - EFFICIENT SOLUTION METHODS FOR THE NAVIER-STOKES EQUATIONS (DEC RISC ULTRIX VERSION)

    NASA Technical Reports Server (NTRS)

    Biyabani, S. R.

    1994-01-01

    ARC2D is a computational fluid dynamics program developed at the NASA Ames Research Center specifically for airfoil computations. The program uses implicit finite-difference techniques to solve two-dimensional Euler equations and thin layer Navier-Stokes equations. It is based on the Beam and Warming implicit approximate factorization algorithm in generalized coordinates. The methods are either time accurate or accelerated non-time accurate steady state schemes. The evolution of the solution through time is physically realistic; good solution accuracy is dependent on mesh spacing and boundary conditions. The mathematical development of ARC2D begins with the strong conservation law form of the two-dimensional Navier-Stokes equations in Cartesian coordinates, which admits shock capturing. The Navier-Stokes equations can be transformed from Cartesian coordinates to generalized curvilinear coordinates in a manner that permits one computational code to serve a wide variety of physical geometries and grid systems. ARC2D includes an algebraic mixing length model to approximate the effect of turbulence. In cases of high Reynolds number viscous flows, thin layer approximation can be applied. ARC2D allows for a variety of solutions to stability boundaries, such as those encountered in flows with shocks. The user has considerable flexibility in assigning geometry and developing grid patterns, as well as in assigning boundary conditions. However, the ARC2D model is most appropriate for attached and mildly separated boundary layers; no attempt is made to model wake regions and widely separated flows. The techniques have been successfully used for a variety of inviscid and viscous flowfield calculations. The Cray version of ARC2D is written in FORTRAN 77 for use on Cray series computers and requires approximately 5Mb memory. The program is fully vectorized. The tape includes variations for the COS and UNICOS operating systems. Also included is a sample routine for CONVEX computers to emulate Cray system time calls, which should be easy to modify for other machines as well. The standard distribution media for this version is a 9-track 1600 BPI ASCII Card Image format magnetic tape. The Cray version was developed in 1987. The IBM ES/3090 version is an IBM port of the Cray version. It is written in IBM VS FORTRAN and has the capability of executing in both vector and parallel modes on the MVS/XA operating system and in vector mode on the VM/XA operating system. Various options of the IBM VS FORTRAN compiler provide new features for the ES/3090 version, including 64-bit arithmetic and up to 2 GB of virtual addressability. The IBM ES/3090 version is available only as a 9-track, 1600 BPI IBM IEBCOPY format magnetic tape. The IBM ES/3090 version was developed in 1989. The DEC RISC ULTRIX version is a DEC port of the Cray version. It is written in FORTRAN 77 for RISC-based Digital Equipment platforms. The memory requirement is approximately 7Mb of main memory. It is available in UNIX tar format on TK50 tape cartridge. The port to DEC RISC ULTRIX was done in 1990. COS and UNICOS are trademarks and Cray is a registered trademark of Cray Research, Inc. IBM, ES/3090, VS FORTRAN, MVS/XA, and VM/XA are registered trademarks of International Business Machines. DEC and ULTRIX are registered trademarks of Digital Equipment Corporation.

  17. Optical theorem for two-dimensional (2D) scalar monochromatic acoustical beams in cylindrical coordinates.

    PubMed

    Mitri, F G

    2015-09-01

    The optical theorem for plane waves is recognized as one of the fundamental theorems in optical, acoustical and quantum wave scattering theory as it relates the extinction cross-section to the forward scattering complex amplitude function. Here, the optical theorem is extended and generalized in a cylindrical coordinates system for the case of 2D beams of arbitrary character as opposed to plane waves of infinite extent. The case of scalar monochromatic acoustical wavefronts is considered, and generalized analytical expressions for the extinction, absorption and scattering cross-sections are derived and extended in the framework of the scalar resonance scattering theory. The analysis reveals the presence of an interference scattering cross-section term describing the interaction between the diffracted Franz waves with the resonance elastic waves. The extended optical theorem in cylindrical coordinates is applicable to any object of arbitrary geometry in 2D located arbitrarily in the beam's path. Related investigations in optics, acoustics and quantum mechanics will benefit from this analysis in the context of wave scattering theory and other phenomena closely connected to it, such as the multiple scattering by a cloud of particles, as well as the resulting radiation force and torque. PMID:25773968

  18. NOTE: Efficient implementation of the rank correlation merit function for 2D/3D registration

    NASA Astrophysics Data System (ADS)

    Figl, M.; Bloch, C.; Gendrin, C.; Weber, C.; Pawiro, S. A.; Hummel, J.; Markelj, P.; Pernu, F.; Bergmann, H.; Birkfellner, W.

    2010-10-01

    A growing number of clinical applications using 2D/3D registration have been presented recently. Usually, a digitally reconstructed radiograph is compared iteratively to an x-ray image of the known projection geometry until a match is achieved, thus providing six degrees of freedom of rigid motion which can be used for patient setup in image-guided radiation therapy or computer-assisted interventions. Recently, stochastic rank correlation, a merit function based on Spearman's rank correlation coefficient, was presented as a merit function especially suitable for 2D/3D registration. The advantage of this measure is its robustness against variations in image histogram content and its wide convergence range. The considerable computational expense of computing an ordered rank list is avoided here by comparing randomly chosen subsets of the DRR and reference x-ray. In this work, we show that it is possible to omit the sorting step and to compute the rank correlation coefficient of the full image content as fast as conventional merit functions. Our evaluation of a well-calibrated cadaver phantom also confirms that rank correlation-type merit functions give the most accurate results if large differences in the histogram content for the DRR and the x-ray image are present.

  19. 3D vessel axis extraction using 2D calibrated x-ray projections for coronary modeling

    NASA Astrophysics Data System (ADS)

    Young, Stewart; Movassaghi, Babak; Weese, Juergen; Rasche, Volker

    2003-05-01

    A new approach for 3D vessel centreline extraction using multiple, ECG-gated, calibrated X-ray angiographic projections of the coronary arteries is described. The proposed method performs direct extraction of 3D vessel centrelines, without the requirement to either first compute prior 2D centreline estimates, or perform a complete volume reconstruction. A front propagation-based algorithm, initialised with one or more 3D seed points, is used to explore a volume of interest centred on the projection geometry's isocentre. The expansion of a 3D region is controlled by forward projecting boundary points into all projection images to compute vessel response measurements, which are combined into a 3D propagation speed so that the front expands rapidly when all projection images yield high vessel responses. Vessel centrelines are obtained by reconstructing the paths of fastest propagation. Based on these axes, a volume model of the coronaries can be constructed by forward projecting axis points into the 2D images where the borders are detected. The accuracy of the method was demonstrated via a comparison of automatically extracted centrelines with 3D centrelines derived from manually segmented projection data.

  20. Dynamics of 2D Dust Clusters with a Perpendicular Magnetic Field

    SciTech Connect

    Greiner, Franko; Carstensen, Jan; Hou Lujing; Piel, Alexander

    2008-09-07

    The physics of two-dimensional (2D) dust clusters in an unmagnetized plasma sheath has been understood in dept. However, introduction of a perpendicular magnetic field into the dusty plasma sheath leads to some new effects, such as rotation and compression of dust clusters, whose mechanism is still unclear. It is found that even for a magnetic field as low as the earth magnetic field ({approx_equal}40 {mu}T), clusters rotate as rigid about their centers. It was proposed [U. Konopka, PRE 61, 1890 (2000)] that the ExB-induced ion flow drives the dust clusters into rotation. Simulations [L.-J. Hou, PoP 12, 042104 (2005)] based on the same hypothesis also reproduced the rotation of 2D clusters in a qualitative manner. However, this model cannot fully explain the experimental observations. We present detailed experimental investigations, which show that the rotation of a dust cluster critically depends on the detailed discharge geometry. In particular, the co-rotation of the background neutral gas and its role in driving dust-cluster rotation is proposed as a mechanism to set the dust cluster in rotation.

  1. Efficient finite element modeling of scattering for 2D and 3D problems

    NASA Astrophysics Data System (ADS)

    Wilcox, Paul D.; Velichko, Alexander

    2010-03-01

    The scattering of waves by defects is central to ultrasonic NDE and SHM. In general, scattering problems must be modeled using direct numerical methods such as finite elements (FE), which is very computationally demanding. The most efficient way is to only model the scatterer itself and a minimal region of the surrounding host medium, and this was previously demonstrated for 2-dimensional (2D) bulk wave scattering problems in isotropic media. An encircling array of monopole and dipole sources is used to inject an arbitrary wavefront onto the scatterer and the scattered field is monitored by a second encircling array of monitoring points. From this data, the scattered field can be projected out to any point in space. If the incident wave is chosen to be a plane wave incident from a given angle and the scattered field is projected to distant points in the far-field of the scatterer, the far-field scattering or S-matrix may be obtained, which encodes all the available scattering information. In this paper, the technique is generalized to any elastic wave geometry in both 2D and 3D, where the latter can include guided wave scattering problems. A further refinement enables the technique to be employed with free FE meshes of triangular or tetrahedral elements.

  2. Lasing of pyrromethene 597 in 2D holographic polymer dispersed liquid crystals: influence of columnar conformation

    NASA Astrophysics Data System (ADS)

    Jakubiak, Rachel; Tondiglia, Vincent P.; Natarajan, Lalgudi V.; Lloyd, Pamela F.; Sutherland, Richard; Vaia, Richard A.; Bunning, Timothy J.

    2009-02-01

    Holographic photopolymerization, such as used to form holographic polymer dispersed liquid crystals (HPDLCs), has the advantage of combining the desirable processing properties of polymers with a periodic distribution of an electrically tunable medium (LC). Herein we describe laser oscillations resulting from distributed feedback in fieldmodulated, 2-D H-PDLC photonic crystals. Compared to results of lasing from pyrromethene 597 in 1-D H-PDLCs, the linewidth of the laser action decreases by at least a factor of four and the lasing wavelength is electrically tunable over 5 nm. The 2-D H-PDLCs consist of LC columns within a polymer matrix that were created by interference of four writing beams on the sample cell. Two configurations were studied; one comprising a reflection grating orthogonal to a transmission grating (in-plane) and the other from two orthogonal transmission gratings (out-of-plane). Given that the lattice spacing was the same for both samples, the lasing wavelengths were similar; however the polarization dependence on lasing threshold varied by a factor of three for the in-plane configuration and electrical switching resulted in bimodal lasing. The out-of-plane geometry showed no polarization dependence on lasing threshold and the lasing blue-shifted with applied electric field.

  3. Magnetic properties of 2D nickel nanostrips: structure dependent magnetism and Stoner criterion

    NASA Astrophysics Data System (ADS)

    Kashid, Vikas; Shah, Vaishali; Salunke, H. G.; Mokrousov, Yuriy; Blügel, Stefan

    2015-08-01

    We have investigated different geometries of two-dimensional (2D) infinite length Ni nanowires of increasing width using spin density functional theory calculations. Our simulations demonstrate that the parallelogram motif is the most stable and structures that incorporate the parallelogram motif are more stable as compared to rectangular structures. The wires are conducting and the conductance channels increase with increasing width. The wires have a non-linear behavior in the ballistic anisotropic magnetoresistance ratios (BAMR) with respect to the magnetization directions. All 2D nanowires as well as Ni (1 1 1) and Ni (1 0 0) monolayer investigated are ferromagnetic under the Stoner criterion and exhibit enhanced magnetic moments as compared to bulk Ni and the respective Ni monolayers. The easy axis for all nickel nanowires under investigation is observed to be along the wire axis. The double rectangular nanowire exhibits a magnetic anomaly with a smaller magnetic moment when compared to Ni (1 0 0) monolayer and is the only structure with an easy axis perpendicular to the wire axis. The Stoner parameter which has been known to be structure independent in bulk and surfaces is found to vary with the structure and the width of the nanowires. The less stable rectangular and rhombus shaped nanowires have a higher ferromagnetic strength than parallelogram shaped nanowires.

  4. Engagement of neural circuits underlying 2D spatial navigation in a rodent virtual reality system

    PubMed Central

    Aronov, Dmitriy; Tank, David W.

    2015-01-01

    SUMMARY Virtual reality (VR) enables precise control of an animals environment and otherwise impossible experimental manipulations. Neural activity in navigating rodents has been studied on virtual linear tracks. However, the spatial navigation systems engagement in complete two-dimensional environments has not been shown. We describe a VR setup for rats, including control software and a large-scale electrophysiology system, which supports 2D navigation by allowing animals to rotate and walk in any direction. The entorhinal-hippocampal circuit, including place cells, grid cells, head direction cells and border cells, showed 2D activity patterns in VR similar to those in the real world. Hippocampal neurons exhibited various remapping responses to changes in the appearance or the shape of the virtual environment, including a novel form in which a VR-induced cue conflict caused remapping to lock to geometry rather than salient cues. These results suggest a general-purpose tool for novel types of experimental manipulations in navigating rats. PMID:25374363

  5. Acoustic Receptivity of a Blasius Boundary Layer with 2-D and Oblique Surface Waviness

    NASA Technical Reports Server (NTRS)

    King, Rudolph A.; Breuer, Kenneth S.

    2000-01-01

    An experimental investigation was conducted to examine acoustic receptivity and subsequent boundary-layer instability evolution for a Blasius boundary layer formed on a flat plate in the presence of two-dimensional (2-D) and oblique (3-D) surface waviness. The effect of the non-localized surface roughness geometry and acoustic wave amplitude on the receptivity process was explored. The surface roughness had a well defined wavenumber spectrum with fundamental wavenumber k (sub w). A planar downstream traveling acoustic wave was created to temporally excite the flow near the resonance frequency of an unstable eigenmode corresponding to k (sub ts) = k (sub w). The range of acoustic forcing levels, epsilon, and roughness heights, DELTA h, examined resulted in a linear dependence of receptivity coefficients; however, the larger values of the forcing combination epsilon dot DELTA h resulted in subsequent nonlinear development of the Tollmien-Schlichting (T-S) wave. This study provided the first experimental evidence of a marked increase in the receptivity coefficient with increasing obliqueness of the surface waviness in excellent agreement with theory. Detuning of the 2-D and oblique disturbances was investigated by varying the streamwise wall-roughness wavenumber a,, and measuring the T-S response. For the configuration where laminar-to-turbulent breakdown occurred, the breakdown process was found to be dominated by energy at the fundamental and harmonic frequencies, indicative of K-type breakdown.

  6. Rapid Plateau border size variations expected in three simple experiments on 2D liquid foams.

    PubMed

    Gay, C; Rognon, P; Reinelt, D; Molino, F

    2011-01-01

    Up to a global scaling, the geometry of foams squeezed between two solid plates (2D GG foams) essentially depends on two independent parameters: the liquid volume fraction and the degree of squeezing (bubble thickness to diameter ratio). We describe it in two main asymptotic regimes: fully dry floor tiles, where the Plateau border radius is smaller than the distance between the solid plates, and dry pancakes, where it is larger. We predict a rapid variation of the Plateau border radius in one part of the pancake regime, namely when the Plateau border radius is larger than the inter-plate distance but smaller than the geometric mean of that distance and the bubble perimeter. This rapid variation is not related to any topological change in the foam: in all the regimes we consider, the bubbles remain in mutual lateral contact through films located at mid-height between both plates. We provide asymptotic predictions in different types of experiments on such 2D GG foams: when foam is being progressively dried or wetted, when it is being squeezed further or stretched, when it coarsens through film breakage or through inter-bubble gas diffusion. Our analysis is restricted to configurations close to equilibrium, as we do not include stresses resulting from bulk viscous flow or from non-homogeneous surfactant concentrations. We also assume that the inter-plate distance is sufficiently small for gravity to be negligible. The present work does not provide a method for measuring small Plateau border radii experimentally, but it indicates that large (and easily observable) Plateau borders should appear or disappear rather suddenly in some types of experiments with small inter-plate gaps. It also gives expected orders of magnitude that should be helpful for designing experiments on 2D GG foams. PMID:21253804

  7. An interactive 2-D power-line modeling and simulation tool

    NASA Astrophysics Data System (ADS)

    Hull, David; Adelman, Ross

    2012-06-01

    The U.S. Army Research Laboratory's Power-Line unmanned aerial vehicle (UAV) Modeling and Simulation (ARL-PLUMS) is a tool for estimating and analyzing quasi-static electric and magnetic fields due to power lines. This tool consists of an interactive 2-D graphical user interface (GUI) and a compute engine that can be used to calculate and visualize the E-Field and H-Field due to as many as seven conductors (two 3-phase circuits and a ground wire). ARL-PLUMS allows the user to set the geometry of the lines and the load conditions on those lines, and then calculate Ey, Ez, Hy, or Hz along a linear path or cutting plane, or in the form of a movie. The path can be along the ground or in the air to simulate the fields that might be observed, for example, by a robotic vehicle or a UAV. ARL-PLUMS makes several simplifying assumptions in order to allow simulations to be completed on a laptop PC interactively. In most cases, the results are excellent, providing a "90% solution" in just a few minutes of total modeling and simulation time. This paper describes the physics used by ARL-PLUMS, including the simplifying assumptions and the 2-D Method of Moments solver. Examples of electric and magnetic fields for different wire configurations, including typical 3-phase distribution and transmissions lines, are provided. Comparisons to similar results using a full 3-D model are also shown, and a discussion of errors that may be expected from the 2-D simulations is provided.

  8. Quantitative microvascular corrosion casting by 2D- and 3D-morphometry.

    PubMed

    Minnich, B; Bartel, H; Lametschwandtner, A

    2001-01-01

    As a system of tubes (blood vessels) the cardiovascular system changes actively and passively diameters to adapt its transport capacities for respiratory gases, nutrients, heat, metabolites and waste products to and off the body's organs, tissues and cells. In most healthy organs blood vessels form a hierarchically arranged three-dimensional network with the geometry defined by vessel diameters, interbranching distances (defining branching frequencies and number of branching sites, i.e. nodes), intervascular distances, and branching angles. In the present study 2D- and 3D-morphometry is applied to quantify these parameters and their changes as they occur in resin casts during metamorphosis of the tadpole lung (2D-morphometry) and filter apparatus vasculature (3D-morphometry). It is shown that 2D-morphometry should be limited to the analysis of high powered images of flat two-dimensional vascular networks (example: tadpole lung alveolar vascular bed) to prevent underestimation of parameters. In contrast, 3D-morphometry can be applied over a wide range of magnifications whereby accuracy of measurements increases with the portion the structure to be measured occupies within the field of view. Together with a careful control of precasting conditions (application of vasoactive drugs, anaesthetics), casting conditions (pressure during rinsing and casting, amount of final shrinkage of casting media), and postcasting conditions (thermal burdening during maceration, sputtering, evaporation, and SEM inspection; thickness of conductive metal layers) 3D-morphometry enables to gain reliable data from resin casts of highly complex real vascular networks in healthy and diseased organs in the developing, juvenile, adult and aged state, as well as in different physiological states. PMID:11729958

  9. 2D and 3D active Tomography of Kos - Nisyros volcanic Area (East Aegean Sea)

    NASA Astrophysics Data System (ADS)

    Makris, J.; Nikolova, S. B.; Ilinski, D.; Chonia, T.

    2003-04-01

    Since June 2000, active and passive seismic observations have been carried out by IfG and GeoPro GmbH, Hamburg within the frame of the project GEOWARN (Geo-Spacial Warning Systems Nisyros Volcano, Greece: An Emergency Case Study of the Volcanic Area of Nisyros) supported by the European Community. In the active experiment 48 recording seismic units were deployed and recorded more than 7000 shots in 3D array. The Nisyros volcano has been identified as an apophytic intrusion of much larger volcanic structure with a caldera of 35 km diameter, extending between the southern coasts of the islands of Kos and Nisyros. To obtain velocity structure of the area a 3-D tomographic inversion and 2D evaluation of seismic profiles was done. The quality of the recorded data permitted to probe the area with high density. The inversion method applied and the high accuracy of active tomographic data allowed for resolving the true dimensions of the caldera and the high velocity bodies within it. Comparison of the results from evaluation of 2D lines on their cross-sections and with the results from 3D tomographic inversion was made. Finally, inversion of 3D data with fixing of the velocities along 2D seismic lines for obtaining better constrained 3D velocity model was done. To understand better the complex geometry of the ray penetration and to compare inversion results with data in an independent manner, obtained velocity model was used as an input for forward modeling using a different 3D ray-tracing code of SW3D.

  10. A scanning-mode 2D shear wave imaging (s2D-SWI) system for ultrasound elastography.

    PubMed

    Qiu, Weibao; Wang, Congzhi; Li, Yongchuan; Zhou, Juan; Yang, Ge; Xiao, Yang; Feng, Ge; Jin, Qiaofeng; Mu, Peitian; Qian, Ming; Zheng, Hairong

    2015-09-01

    Ultrasound elastography is widely used for the non-invasive measurement of tissue elasticity properties. Shear wave imaging (SWI) is a quantitative method for assessing tissue stiffness. SWI has been demonstrated to be less operator dependent than quasi-static elastography, and has the ability to acquire quantitative elasticity information in contrast with acoustic radiation force impulse (ARFI) imaging. However, traditional SWI implementations cannot acquire two dimensional (2D) quantitative images of the tissue elasticity distribution. This study proposes and evaluates a scanning-mode 2D SWI (s2D-SWI) system. The hardware and image processing algorithms are presented in detail. Programmable devices are used to support flexible control of the system and the image processing algorithms. An analytic signal based cross-correlation method and a Radon transformation based shear wave speed determination method are proposed, which can be implemented using parallel computation. Imaging of tissue mimicking phantoms, and in vitro, and in vivo imaging test are conducted to demonstrate the performance of the proposed system. The s2D-SWI system represents a new choice for the quantitative mapping of tissue elasticity, and has great potential for implementation in commercial ultrasound scanners. PMID:26025508

  11. 2D-2D tunneling field-effect transistors using WSe2/SnSe2 heterostructures

    NASA Astrophysics Data System (ADS)

    Roy, Tania; Tosun, Mahmut; Hettick, Mark; Ahn, Geun Ho; Hu, Chenming; Javey, Ali

    2016-02-01

    Two-dimensional materials present a versatile platform for developing steep transistors due to their uniform thickness and sharp band edges. We demonstrate 2D-2D tunneling in a WSe2/SnSe2 van der Waals vertical heterojunction device, where WSe2 is used as the gate controlled p-layer and SnSe2 is the degenerately n-type layer. The van der Waals gap facilitates the regulation of band alignment at the heterojunction, without the necessity of a tunneling barrier. ZrO2 is used as the gate dielectric, allowing the scaling of gate oxide to improve device subthreshold swing. Efficient gate control and clean interfaces yield a subthreshold swing of ˜100 mV/dec for >2 decades of drain current at room temperature, hitherto unobserved in 2D-2D tunneling devices. The subthreshold swing is independent of temperature, which is a clear signature of band-to-band tunneling at the heterojunction. A maximum switching ratio ION/IOFF of 107 is obtained. Negative differential resistance in the forward bias characteristics is observed at 77 K. This work bodes well for the possibilities of two-dimensional materials for the realization of energy-efficient future-generation electronics.

  12. Response to CYP2D6 substrate antidepressants is predicted by a CYP2D6 composite phenotype based on genotype and comedications with CYP2D6 inhibitors.

    PubMed

    Gressier, F; Verstuyft, C; Hardy, P; Becquemont, L; Corruble, E

    2015-01-01

    The cytochrome P450 2D6 (CYP2D6) is involved in the metabolism of most antidepressants. Comedication with a potent CYP2D6 inhibitor can convert patients with extensive metabolizer (EM) or ultra-rapid metabolizer (UM) genotypes into poor metabolizer (PM) phenotypes. Since comedication is frequent in depressed patients treated with antidepressants, we investigated the effect of the CYP2D6 composite phenotype on antidepressant efficacy, taking into account both the CYP2D6 genotype and comedication with CYP2D6 inhibitors. 87 Caucasian in patients with a major depressive episode were prospectively treated with flexible doses of antidepressant monotherapy as well as comedications and genotyped for the major CYP2D6 alleles (CYP2D6*3 rs35742686, *4 rs3892097, *5 del, *6 rs5030655, and *2xN). They were classified for CYP2D6 composite phenotype and assessed for antidepressant response after 4weeks. In terms of genotypes (g), 6 subjects were UMg, 6 PMg, and 75 EMg. Ten patients were coprescribed a CYP2D6 inhibitor, resulting in the following composite phenotypes (cp): 5 UMcp, 16 PMcp, and 66 EMcp. Whereas none of the CYP2D6 genotypes were significantly associated with antidepressant response, UMcp had a lower antidepressant response than PMcp or EMcp (respectively: 39.017.9, 50.026.0, and 61.623.4, p=0.02). Despite small sample size, this study suggests that a CYP2D6 composite phenotype, taking into account both genotype and comedications with CYP2D6 inhibitors, could predict CYP2D6 substrate antidepressants response. Thus, to optimize antidepressant response, CYP2D6 genotype could be performed and comedications with CYP2D6 inhibitors should be avoided, when prescribing CYP2D6 substrate antidepressants. PMID:25047911

  13. 2-D linear motion system. Innovative technology summary report

    SciTech Connect

    1998-11-01

    The US Department of Energy's (DOE's) nuclear facility decontamination and decommissioning (D and D) program requires buildings to be decontaminated, decommissioned, and surveyed for radiological contamination in an expeditious and cost-effective manner. Simultaneously, the health and safety of personnel involved in the D and D activities is of primary concern. D and D workers must perform duties high off the ground, requiring the use of manlifts or scaffolding, often, in radiologically or chemically contaminated areas or in areas with limited access. Survey and decontamination instruments that are used are sometimes heavy or awkward to use, particularly when the worker is operating from a manlift or scaffolding. Finding alternative methods of performing such work on manlifts or scaffolding is important. The 2-D Linear Motion System (2-D LMS), also known as the Wall Walker{trademark}, is designed to remotely position tools and instruments on walls for use in such activities as radiation surveys, decontamination, and painting. Traditional (baseline) methods for operating equipment for these tasks require workers to perform duties on elevated platforms, sometimes several meters above the ground surface and near potential sources of contamination. The Wall Walker 2-D LMS significantly improves health and safety conditions by facilitating remote operation of equipment. The Wall Walker 2-D LMS performed well in a demonstration of its precision, accuracy, maneuverability, payload capacity, and ease of use. Thus, this innovative technology is demonstrated to be a viable alternative to standard methods of performing work on large, high walls, especially those that have potential contamination concerns. The Wall Walker was used to perform a final release radiological survey on over 167 m{sup 2} of walls. In this application, surveying using a traditional (baseline) method that employs an aerial lift for manual access was 64% of the total cost of the improved technology. However, for areas over approximately 600 m{sup 2}, the Wall Walker would cost less than the baseline. Using the Wall Walker 2-D LMS, ALARA exposure and worker safety is improved, and there is potential for increased productivity. This innovative technology performed better than the baseline by providing real-time monitoring of the tool or instrument position. Also, the Wall Walker 2-D LMS can traverse any two-dimensional path at constant speeds of up to 18.3 linear meters per minute (60 linear feet per minute). The survey production rate for the innovative technology was about 0.6 m{sup 2}/min (6 ft{sup 2}/min); the baseline production rate was approximately 0.3 m{sup 2}/min (3 ft{sup 2}/min), using the same surveying instrument and maximum scanning rate.

  14. Cylindrical geometry hall thruster

    DOEpatents

    Raitses, Yevgeny; Fisch, Nathaniel J.

    2002-01-01

    An apparatus and method for thrusting plasma, utilizing a Hall thruster with a cylindrical geometry, wherein ions are accelerated in substantially the axial direction. The apparatus is suitable for operation at low power. It employs small size thruster components, including a ceramic channel, with the center pole piece of the conventional annular design thruster eliminated or greatly reduced. Efficient operation is accomplished through magnetic fields with a substantial radial component. The propellant gas is ionized at an optimal location in the thruster. A further improvement is accomplished by segmented electrodes, which produce localized voltage drops within the thruster at optimally prescribed locations. The apparatus differs from a conventional Hall thruster, which has an annular geometry, not well suited to scaling to small size, because the small size for an annular design has a great deal of surface area relative to the volume.

  15. Brane Universe: Global Geometry

    SciTech Connect

    Berezin, Victor

    2010-06-23

    The global geometries of bulk vacuum space-times in the brane-universe models are investigated and classified in terms of geometrical invariants. The corresponding Carter-Penrose diagrams and embedding diagrams are constructed. It is shown that for a given energy-momentum induced on the brane there can be different types of global geometries depending on the signs of a bulk cosmological term and surface energy density of the brane (the sign of the latter does not influence the internal cosmological evolution). It is shown that in the Randall-Sundrum scenario it is possible to have an asymmetric hierarchy splitting even with a Z{sub 2}-symmetric matching of 'our' brane to the bulk.

  16. Puzzle geometry and rigidity

    NASA Astrophysics Data System (ADS)

    Smania, Daniel

    2007-07-01

    We describe a new and robust method to prove rigidity results in complex dynamics. The new ingredient is the geometry of the critical puzzle pieces: under control of geometry and ``complex bounds'', two generalized polynomial-like maps which admit a topological conjugacy, quasiconformal outside the filled-in Julia set, are indeed quasiconformally conjugate. The proof uses a new abstract removability-type result for quasiconformal maps, following ideas of Heinonen and Koskela and of Kallunki and Koskela, optimized for applications in complex dynamics. We prove, as the first application of this new method, that, for even criticalities distinct from two, the period two cycle of the Fibonacci renormalization operator is hyperbolic with 1 -dimensional unstable manifold.

  17. Geometry of thermodynamic control.

    PubMed

    Zulkowski, Patrick R; Sivak, David A; Crooks, Gavin E; DeWeese, Michael R

    2012-10-01

    A deeper understanding of nonequilibrium phenomena is needed to reveal the principles governing natural and synthetic molecular machines. Recent work has shown that when a thermodynamic system is driven from equilibrium then, in the linear response regime, the space of controllable parameters has a Riemannian geometry induced by a generalized friction tensor. We exploit this geometric insight to construct closed-form expressions for minimal-dissipation protocols for a particle diffusing in a one-dimensional harmonic potential, where the spring constant, inverse temperature, and trap location are adjusted simultaneously. These optimal protocols are geodesics on the Riemannian manifold and reveal that this simple model has a surprisingly rich geometry. We test these optimal protocols via a numerical implementation of the Fokker-Planck equation and demonstrate that the friction tensor arises naturally from a first-order expansion in temporal derivatives of the control parameters, without appealing directly to linear response theory. PMID:23214570

  18. Inflation from quantum geometry.

    PubMed

    Bojowald, Martin

    2002-12-23

    Quantum geometry predicts that a universe evolves through an inflationary phase at small volume before exiting gracefully into a standard Friedmann phase. This does not require the introduction of additional matter fields with ad hoc potentials; rather, it occurs because of a quantum gravity modification of the kinetic part of ordinary matter Hamiltonians. An application of the same mechanism can explain why the present day cosmological acceleration is so tiny. PMID:12484808

  19. Electroweak vacuum geometry

    NASA Astrophysics Data System (ADS)

    Lepora, Nathan F.; Kibble, Tom W. B.

    1999-04-01

    We analyse symmetry breaking in the Weinberg-Salam model paying particular attention to the underlying geometry of the theory. In this context we find two natural metrics upon the vacuum manifold: an isotropic metric associated with the scalar sector, and a squashed metric associated with the gauge sector. Physically, the interplay between these metrics gives rise to many of the non-perturbative features of Weinberg-Salam theory.

  20. E 8 geometry

    NASA Astrophysics Data System (ADS)

    Cederwall, Martin; Rosabal, J. A.

    2015-07-01

    We investigate exceptional generalised diffeomorphisms based on E 8(8) in a geometric setting. The transformations include gauge transformations for the dual gravity field. The surprising key result, which allows for a development of a tensor formalism, is that it is possible to define field-dependent transformations containing connection, which are covariant. We solve for the spin connection and construct a curvature tensor. A geometry for the Ehlers symmetry SL( n + 1) is sketched. Some related issues are discussed.

  1. Freezing in confined geometries

    NASA Technical Reports Server (NTRS)

    Sokol, P. E.; Ma, W. J.; Herwig, K. W.; Snow, W. M.; Wang, Y.; Koplik, Joel; Banavar, Jayanth R.

    1992-01-01

    Results of detailed structural studies, using elastic neutron scattering, of the freezing of liquid O2 and D2 in porous vycor glass, are presented. The experimental studies have been complemented by computer simulations of the dynamics of freezing of a Lennard-Jones liquid in narrow channels bounded by molecular walls. Results point to a new simple physical interpretation of freezing in confined geometries.

  2. Integral geometry and holography

    NASA Astrophysics Data System (ADS)

    Czech, Bart?omiej; Lamprou, Lampros; McCandlish, Samuel; Sully, James

    2015-10-01

    We present a mathematical framework which underlies the connection between information theory and the bulk spacetime in the AdS3/CFT2 correspondence. A key concept is kinematic space: an auxiliary Lorentzian geometry whose metric is defined in terms of conditional mutual informations and which organizes the entanglement pattern of a CFT state. When the field theory has a holographic dual obeying the Ryu-Takayanagi proposal, kinematic space has a direct geometric meaning: it is the space of bulk geodesics studied in integral geometry. Lengths of bulk curves are computed by kinematic volumes, giving a precise entropic interpretation of the length of any bulk curve. We explain how basic geometric concepts points, distances and angles are reflected in kinematic space, allowing one to reconstruct a large class of spatial bulk geometries from boundary entanglement entropies. In this way, kinematic space translates between information theoretic and geometric descriptions of a CFT state. As an example, we discuss in detail the static slice of AdS3 whose kinematic space is two-dimensional de Sitter space.

  3. Noncommutative geometry and arithmetics

    NASA Astrophysics Data System (ADS)

    Almeida, P.

    2009-09-01

    We intend to illustrate how the methods of noncommutative geometry are currently used to tackle problems in class field theory. Noncommutative geometry enables one to think geometrically in situations in which the classical notion of space formed of points is no longer adequate, and thus a noncommutative space is needed; a full account of this approach is given in [3] by its main contributor, Alain Connes. The class field theory, i.e., number theory within the realm of Galois theory, is undoubtedly one of the main achievements in arithmetics, leading to an important algebraic machinery; for a modern overview, see [23]. The relationship between noncommutative geometry and number theory is one of the many themes treated in [22, 7-9, 11], a small part of which we will try to put in a more down-to-earth perspective, illustrating through an example what should be called an application of physics to mathematics, and our only purpose is to introduce nonspecialists to this beautiful area.

  4. Integral geometry and holography

    SciTech Connect

    Czech, Bartlomiej; Lamprou, Lampros; McCandlish, Samuel; Sully, James

    2015-10-27

    We present a mathematical framework which underlies the connection between information theory and the bulk spacetime in the AdS3/CFT2 correspondence. A key concept is kinematic space: an auxiliary Lorentzian geometry whose metric is defined in terms of conditional mutual informations and which organizes the entanglement pattern of a CFT state. When the field theory has a holographic dual obeying the Ryu-Takayanagi proposal, kinematic space has a direct geometric meaning: it is the space of bulk geodesics studied in integral geometry. Lengths of bulk curves are computed by kinematic volumes, giving a precise entropic interpretation of the length of any bulk curve. We explain how basic geometric concepts -- points, distances and angles -- are reflected in kinematic space, allowing one to reconstruct a large class of spatial bulk geometries from boundary entanglement entropies. In this way, kinematic space translates between information theoretic and geometric descriptions of a CFT state. As an example, we discuss in detail the static slice of AdS3 whose kinematic space is two-dimensional de Sitter space.

  5. Integral geometry and holography

    DOE PAGESBeta

    Czech, Bartlomiej; Lamprou, Lampros; McCandlish, Samuel; Sully, James

    2015-10-27

    We present a mathematical framework which underlies the connection between information theory and the bulk spacetime in the AdS3/CFT2 correspondence. A key concept is kinematic space: an auxiliary Lorentzian geometry whose metric is defined in terms of conditional mutual informations and which organizes the entanglement pattern of a CFT state. When the field theory has a holographic dual obeying the Ryu-Takayanagi proposal, kinematic space has a direct geometric meaning: it is the space of bulk geodesics studied in integral geometry. Lengths of bulk curves are computed by kinematic volumes, giving a precise entropic interpretation of the length of any bulkmore » curve. We explain how basic geometric concepts -- points, distances and angles -- are reflected in kinematic space, allowing one to reconstruct a large class of spatial bulk geometries from boundary entanglement entropies. In this way, kinematic space translates between information theoretic and geometric descriptions of a CFT state. As an example, we discuss in detail the static slice of AdS3 whose kinematic space is two-dimensional de Sitter space.« less

  6. Emergent Complex Network Geometry

    PubMed Central

    Wu, Zhihao; Menichetti, Giulia; Rahmede, Christoph; Bianconi, Ginestra

    2015-01-01

    Networks are mathematical structures that are universally used to describe a large variety of complex systems such as the brain or the Internet. Characterizing the geometrical properties of these networks has become increasingly relevant for routing problems, inference and data mining. In real growing networks, topological, structural and geometrical properties emerge spontaneously from their dynamical rules. Nevertheless we still miss a model in which networks develop an emergent complex geometry. Here we show that a single two parameter network model, the growing geometrical network, can generate complex network geometries with non-trivial distribution of curvatures, combining exponential growth and small-world properties with finite spectral dimensionality. In one limit, the non-equilibrium dynamical rules of these networks can generate scale-free networks with clustering and communities, in another limit planar random geometries with non-trivial modularity. Finally we find that these properties of the geometrical growing networks are present in a large set of real networks describing biological, social and technological systems. PMID:25985280

  7. Emergent Complex Network Geometry

    NASA Astrophysics Data System (ADS)

    Wu, Zhihao; Menichetti, Giulia; Rahmede, Christoph; Bianconi, Ginestra

    2015-05-01

    Networks are mathematical structures that are universally used to describe a large variety of complex systems such as the brain or the Internet. Characterizing the geometrical properties of these networks has become increasingly relevant for routing problems, inference and data mining. In real growing networks, topological, structural and geometrical properties emerge spontaneously from their dynamical rules. Nevertheless we still miss a model in which networks develop an emergent complex geometry. Here we show that a single two parameter network model, the growing geometrical network, can generate complex network geometries with non-trivial distribution of curvatures, combining exponential growth and small-world properties with finite spectral dimensionality. In one limit, the non-equilibrium dynamical rules of these networks can generate scale-free networks with clustering and communities, in another limit planar random geometries with non-trivial modularity. Finally we find that these properties of the geometrical growing networks are present in a large set of real networks describing biological, social and technological systems.

  8. Emergent complex network geometry.

    PubMed

    Wu, Zhihao; Menichetti, Giulia; Rahmede, Christoph; Bianconi, Ginestra

    2015-01-01

    Networks are mathematical structures that are universally used to describe a large variety of complex systems such as the brain or the Internet. Characterizing the geometrical properties of these networks has become increasingly relevant for routing problems, inference and data mining. In real growing networks, topological, structural and geometrical properties emerge spontaneously from their dynamical rules. Nevertheless we still miss a model in which networks develop an emergent complex geometry. Here we show that a single two parameter network model, the growing geometrical network, can generate complex network geometries with non-trivial distribution of curvatures, combining exponential growth and small-world properties with finite spectral dimensionality. In one limit, the non-equilibrium dynamical rules of these networks can generate scale-free networks with clustering and communities, in another limit planar random geometries with non-trivial modularity. Finally we find that these properties of the geometrical growing networks are present in a large set of real networks describing biological, social and technological systems. PMID:25985280

  9. Calculation of wakefields in 2D rectangular structures

    NASA Astrophysics Data System (ADS)

    Zagorodnov, I.; Bane, K. L. F.; Stupakov, G.

    2015-10-01

    We consider the calculation of electromagnetic fields generated by an electron bunch passing through a vacuum chamber structure that, in general, consists of an entry pipe, followed by some kind of transition or cavity, and ending in an exit pipe. We limit our study to structures having rectangular cross section, where the height can vary as function of longitudinal coordinate but the width and side walls remain fixed. For such structures, we derive a Fourier representation of the wake potentials through one-dimensional functions. A new numerical approach for calculating the wakes in such structures is proposed and implemented in the computer code echo(2d). The computation resource requirements for this approach are moderate and comparable to those for finding the wakes in 2D rotationally symmetric structures. Numerical examples obtained with the new numerical code are presented.

  10. Defect Dynamics in Active 2D Nematic Liquid Crystals

    NASA Astrophysics Data System (ADS)

    Decamp, Stephen; Redner, Gabriel; Hagan, Michael; Dogic, Zvonimir

    2014-03-01

    Active materials are assemblies of animate, energy-consuming objects that exhibit continuous dynamics. As such, they have properties that are dramatically different from those found in conventional materials made of inanimate objects. We present a 2D active nematic liquid crystal composed of bundled microtubules and kinesin motor proteins that exists in a dynamic steady-state far from equilibrium. The active nematic exhibits spontaneous binding and unbinding of charge +1/2 and -1/2 disclination defects as well as streaming of +1/2 defects. By tuning ATP concentration, we precisely control the amount of activity, a key parameter of the system. We characterize the dynamics of streaming defects on a large, flat, 2D interface using quantitative polarization light microscopy. We report fundamental characteristics of the active nematics such as defect velocities, defect creation and annihilation rates, and emergent length scales in the system.

  11. Development of 2D Ionization Chamber for Particle Therapy

    NASA Astrophysics Data System (ADS)

    Ho, Chi-Li

    2010-11-01

    Recently rapid growth in particle therapy has imposed new detector developments for quality assurance (QA) purposes. Relatively high dose deposition from proton or carbon ion beam requires stringent performance from detectors. Cyclotron, synchrotron, or future laser driven accelerators represent DC and pulse sources which need different timing designs in electronics. Dose and position measurements of particle beams can serve clinical, beam diagnosis and QA purposes. We categorize the parameters of detectors - electronics, DAQ, and simulation--to serve for later optimizations. Gaseous detector is preferred because of its radiation hardness, and operation at ionization mode provides stable condition. We present our progresses in 2D ionization chamber development. Basic studies are carried out on 1D ionization chamber, which consists of 16 6-mm-wide strips. Results of measuring electron and proton beams are compared with MC simulations. 2D array ionization chamber design is optimized and based on 1D prototype measurements.

  12. Leber congenital amaurosis caused by mutations in GUCY2D.

    PubMed

    Boye, Shannon E

    2015-01-01

    Leber congenital amaurosis (LCA) is a clinically and genetically heterogeneous group of diseases that account for the most severe form of early-onset retinal dystrophy. Mutations in retinal guanylate cyclase-1 (GUCY2D) are associated with LCA1, a prevalent form. GUCY2D encodes guanylate cyclase-1 (GC1), a protein expressed in rod and cone photoreceptors that regulates cGMP and Ca(2+) levels within these cells. LCA1 patients present with severely impaired vision, reduced, or ablated electroretinogram and nystagmus. Despite a high degree of visual disturbance, LCA1 patients retain normal photoreceptor laminar architecture, except for foveal cone outer segment abnormalities and, in some patients, foveal cone loss. This article will summarize clinical characterization of patients and proof of concept gene replacement studies in several animal models of GC1 deficiency, both of which have laid the groundwork for clinical application of a gene therapy for treatment of LCA1. PMID:25256176

  13. A robust technique for 2D-3D registration.

    PubMed

    Gong, Ren Hui; Abolmaesumi, Purang; Stewart, James

    2006-01-01

    A robust 2D-3D registration method with a wide capture range is presented. The method registers pre-operatively collected 3D computed tomography (CT) data sets of a single bone fragment to its intra-operative fluoroscope images. The registration technique relies on hardware rendering of CT data on consumer-grade graphics cards to generate digitally reconstructed radiographs (DRRs) in real time. We also employ unscented Kalman filter to solve for the non-linear dynamics governing this 2D-3D registration problem. The method is validated on phantom models of three different anatomies, namely scaphoid, pelvis and femur. We show that, under the same testing conditions, our proposed technique outperforms the conventional simplex-based method in capture range and robustness while providing comparable accuracy and computation time. PMID:17945644

  14. The 2-D lattice theory of Flower Constellations

    NASA Astrophysics Data System (ADS)

    Avendao, Martn E.; Davis, Jeremy J.; Mortari, Daniele

    2013-08-01

    The 2-D lattice theory of Flower Constellations, generalizing Harmonic Flower Constellations (the symmetric subset of Flower Constellations) as well as the Walker/ Mozhaev constellations, is presented here. This theory is a new general framework to design symmetric constellations using a 2 2 lattice matrix of integers or by its minimal representation, the Hermite normal form. From a geometrical point of view, the phasing of satellites is represented by a regular pattern (lattice) on a two-Dimensional torus. The 2-D lattice theory of Flower Constellations does not require any compatibility condition and uses a minimum set of integer parameters whose meaning are explored throughout the paper. This general minimum-parametrization framework allows us to obtain all symmetric distribution of satellites. Due to the J_2 effect this design framework is meant for circular orbits and for elliptical orbits at critical inclination, or to design elliptical constellations for the unperturbed Keplerian case.

  15. Phase-locking of the 2D structures.

    PubMed

    Apollonov, V V; Derzhavin, S; Kislov, V; Kuzminov, V; Mashkovskiy, D; Prokhorov, A M

    1999-01-01

    Experimental results on 1D and 2D phase-locking of laser diode arrays are presented. Attention is paid to the employment of the arrays consisting of wide aperture lasers diodes. Selection of the "in-phase" supermode, preferable for most of the cases, is attained in the external quarter Talbot (Lc=ZT/4=d 2 /2l) cavity due to the output mirror tilt at the angle jm=l/2d. Analysis of the parameters that influence on the phase-locking is given. Our experiments confirm theoretical predictions of the system stability and adequate selectivity for the laser diode array fill factor (FF) FF=0.6. PMID:19396252

  16. Micro-structural Fluctuations in 2D Dusty Plasma Liquids

    SciTech Connect

    I Lin; Huang, Y.-H.; Teng, L.-W.

    2007-07-13

    We address structural fluctuations in a cold 2D dusty plasma liquid which is self-organized through the strong Coulomb coupling of the negatively charged micro-meter sized dust particles suspending in weakly ionized discharges. The 2D liquids consist of triangular type ordered domains surrounded by defect clusters, which can be reorganized through avalanche type hopping under the interplay of strong Coulomb coupling and thermal fluctuations. The spatio-temporal evolutions of the local bond-orientational order are directly tracked through digital optical microscopy. The power law scaling of the temporal persistence length of fluctuations is obtained for the cold liquid. The measurement of the conditional probability of the persistence lengths of the successive fluctuating cycles suggests certain types of the persistence length combinations are more preferred. The memory of persistence lasts a few fluctuating cycles.

  17. A Better 2-D Mechanical Energy Conservation Experiment

    NASA Astrophysics Data System (ADS)

    Paesler, Michael

    2012-02-01

    A variety of simple classical mechanics energy conservation experiments are used in teaching laboratories. Typical one-dimensional (1-D) setups may involve falling balls or oscillating springs. Many of these can be quite satisfying in that students can confirmwithin a few percentthat mechanical energy is conserved. Students generally have little trouble identifying discrepancies such as the loss of a few percent of the gravitational potential energy due to air friction encountered by a falling ball. Two-dimensional (2-D) systems can require more sophisticated analysis for higher level laboratories, but such systems often incorporate complicating components that can make the exercise academically incomplete and experimentally less accurate. The following describes a simple 2-D energy conservation experiment based on the popular "Newton's Cradle" toy that allows students to account for nearly all of the mechanical energy in the system in an academically complete analysis.

  18. MasterChem: cooking 2D-polymers.

    PubMed

    Rodrguez-San-Miguel, D; Amo-Ochoa, P; Zamora, F

    2016-03-01

    2D-polymers are still dominated by graphene and closely related materials such as boron nitride, transition metal sulphides and oxides. However, the rational combination of molecules with suitable design is already showing the high potential of chemistry in this new research field. The aim of this feature article is to illustrate, and provide some perspectives, the current state-of-the-art in the field of synthetic 2D-polymers showing different alternatives to prepare this novel type of polymers based on the rational use of chemistry. This review comprises a brief revision of the essential concepts, the strategies of preparation following the two general approaches, bottom-up and top-down, and a revision of the promising seminal properties showed by some of these nanomaterials. PMID:26790817

  19. Visible light stealth based on 2D holographic antireflection coatings

    NASA Astrophysics Data System (ADS)

    Liu, Ying; Yao, Guozheng; Zhao, Lili

    2014-11-01

    The reflection efficiency of material surface can be reduced by fabricated sub-micron periodic structures. Part of the light energy will propagate along the surface of the material as guided wave, thereby, the interaction between material and light is increased and the light absorption efficiency in visible light stealth material is improved. In this paper, two-dimensional (2D) relief periodic structure with 300nm was fabricated by holographic lithography. Test results show that the reflection efficiency of the material surface can be reduce after fabricated 2D periodic structures. However, because of the presence of diffraction orders, the zero order transmission diffraction efficiency is reduced in short wavelength band. Through rational design of the duty cycle and etching depth, the diffraction efficiency of reflection can be reduced, and then, the optical coupling efficiency of the material can be improved and the visible light stealth properties of the material can be improved too.

  20. Alignment-free characterization of 2D gratings.

    PubMed

    Madsen, Morten Hannibal; Boher, Pierre; Hansen, Poul-Erik; Jørgensen, Jan Friis

    2016-01-10

    Fast characterization of 2D gratings is demonstrated using a Fourier lens optical system and a differential optimization algorithm. It is shown that the grating-specific parameters such as the basis vectors and the angle between them, along with the alignment of the sample, such as the rotation of the sample around the x, y, and z axis, can be deduced from a single measurement. More specifically, the lattice vectors and the angle between them have been measured, while the corrections of the alignment parameters are used to improve the quality of the measurement and, hence, reduce the measurement uncertainty. Alignment-free characterization is demonstrated on a 2D hexagonal grating with a period of 700 nm and a checkerboard grating with a pitch of 3000 nm. The method also can be used for automatic alignment and in-line characterization of gratings. PMID:26835768

  1. Visualization of 2-D and 3-D Tensor Fields

    NASA Technical Reports Server (NTRS)

    Hesselink, Lambertus

    1995-01-01

    In previous work we have developed a novel approach to visualizing second order symmetric 2-D tensor fields based on degenerate point analysis. At degenerate points the eigenvalues are either zero or equal to each other, and the hyperstreamlines about these points give rise to trisector or wedge points. These singularities and their connecting hyperstreamlines determine the topology of the tensor field. In this study we are developing new methods for analyzing and displaying 3-D tensor fields. This problem is considerably more difficult than the 2-D one, as the richness of the data set is much larger. Here we report on our progress and a novel method to find, analyze and display 3-D degenerate points. First we discuss the theory, then an application involving a 3-D tensor field, the Boussinesq problem with two forces.

  2. Visualization of 2-D and 3-D Tensor Fields

    NASA Technical Reports Server (NTRS)

    Hesselink, Lambertus

    1997-01-01

    In previous work we have developed a novel approach to visualizing second order symmetric 2-D tensor fields based on degenerate point analysis. At degenerate points the eigenvalues are either zero or equal to each other, and the hyper-streamlines about these points give rise to tri-sector or wedge points. These singularities and their connecting hyper-streamlines determine the topology of the tensor field. In this study we are developing new methods for analyzing and displaying 3-D tensor fields. This problem is considerably more difficult than the 2-D one, as the richness of the data set is much larger. Here we report on our progress and a novel method to find , analyze and display 3-D degenerate points. First we discuss the theory, then an application involving a 3-D tensor field, the Boussinesq problem with two forces.

  3. Resonant tunneling in 2D-photonic superlattices

    NASA Astrophysics Data System (ADS)

    Kanouni, F.; Brezini, A.; Graine, R.; Arab, F.; Assali, A.

    2015-10-01

    Transmissions and resonant tunneling of two-dimensional (2D) photonic superlattices (PhSLs) are discussed. We consider PhSL composed of two alternating 2D-photonic crystals. The structure is denoted as A/B/A/B……A/B, where photonic crystals A and B act as photonic wells and barriers, respectively. The transmission coefficient is calculated using the Transfer Matrix Method (TMM) in combination with Bloch theorem. The transmission spectra of the PhSLs indicate that the formation of photonic miniband and minigap inside the wells. The positions and number of the minibands can be artificially tuned by varying the well width. By appropriately choosing the structure parameters, these interesting results can be used to develop new photonic devices.

  4. Controlling avalanche criticality in 2D nano arrays

    PubMed Central

    Zohar, Y. C.; Yochelis, S.; Dahmen, K. A.; Jung, G.; Paltiel, Y.

    2013-01-01

    Many physical systems respond to slowly changing external force through avalanches spanning broad range of sizes. Some systems crackle even without apparent external force, such as bursts of neuronal activity or charge transfer avalanches in 2D molecular layers. Advanced development of theoretical models describing disorder-induced critical phenomena calls for experiments probing the dynamics upon tuneable disorder. Here we show that isomeric structural transitions in 2D organic self-assembled monolayer (SAM) exhibit critical dynamics with experimentally tuneable disorder. The system consists of field effect transistor coupled through SAM to illuminated semiconducting nanocrystals (NCs). Charges photoinduced in NCs are transferred through SAM to the transistor surface and modulate its conductivity. Avalanches of isomeric structural transitions are revealed by measuring the current noise I(t) of the transistor. Accumulated surface traps charges reduce dipole moments of the molecules, decrease their coupling, and thus decrease the critical disorder of the SAM enabling its tuning during experiments. PMID:23677142

  5. Transition to chaos in an open unforced 2D flow

    NASA Technical Reports Server (NTRS)

    Pulliam, Thomas H.; Vastano, John A.

    1993-01-01

    The present numerical study of unsteady, low Reynolds number flow past a 2D airfoil attempts to ascertain the bifurcation sequence leading from simple periodic to complex aperiodic flow with rising Reynolds number, as well as to characterize the degree of chaos present in the aperiodic flow and assess the role of numerics in the modification and control of the observed bifurcation scenario. The ARC2D Navier-Stokes code is used in an unsteady time-accurate mode for most of these computations. The system undergoes a period-doubling bifurcation to chaos as the Reynolds number is increased from 800 to 1600; its chaotic attractors are characterized by estimates of the fractal dimension and partial Liapunov exponent spectra.

  6. 2-D Magnetohydrodynamic Modeling of A Pulsed Plasma Thruster

    NASA Technical Reports Server (NTRS)

    Thio, Y. C. Francis; Cassibry, J. T.; Wu, S. T.; Rodgers, Stephen L. (Technical Monitor)

    2002-01-01

    Experiments are being performed on the NASA Marshall Space Flight Center (MSFC) MK-1 pulsed plasma thruster. Data produced from the experiments provide an opportunity to further understand the plasma dynamics in these thrusters via detailed computational modeling. The detailed and accurate understanding of the plasma dynamics in these devices holds the key towards extending their capabilities in a number of applications, including their applications as high power (greater than 1 MW) thrusters, and their use for producing high-velocity, uniform plasma jets for experimental purposes. For this study, the 2-D MHD modeling code, MACH2, is used to provide detailed interpretation of the experimental data. At the same time, a 0-D physics model of the plasma initial phase is developed to guide our 2-D modeling studies.

  7. SmaggIce 2D Version 1.8: Software Toolkit Developed for Aerodynamic Simulation Over Iced Airfoils

    NASA Technical Reports Server (NTRS)

    Choo, Yung K.; Vickerman, Mary B.

    2005-01-01

    SmaggIce 2D version 1.8 is a software toolkit developed at the NASA Glenn Research Center that consists of tools for modeling the geometry of and generating the grids for clean and iced airfoils. Plans call for the completed SmaggIce 2D version 2.0 to streamline the entire aerodynamic simulation process--the characterization and modeling of ice shapes, grid generation, and flow simulation--and to be closely coupled with the public-domain application flow solver, WIND. Grid generated using version 1.8, however, can be used by other flow solvers. SmaggIce 2D will help researchers and engineers study the effects of ice accretion on airfoil performance, which is difficult to do with existing software tools because of complex ice shapes. Using SmaggIce 2D, when fully developed, to simulate flow over an iced airfoil will help to reduce the cost of performing flight and wind-tunnel tests for certifying aircraft in natural and simulated icing conditions.

  8. Investigations of flowfields found in typical combustor geometries

    NASA Technical Reports Server (NTRS)

    Lilley, D. G.

    1982-01-01

    Experimental and theoretical research undertaken on 2-D axisymmetric geometries under low speed, nonreacting, turbulent, swirling flow conditions is reported. The flow enters the test section and proceeds into a larger chamber (the expansion ratio D/d = 2) via a sudden or gradual expansion (sidewall angle alpha = 90 and 45 degrees). Inlet swirl vanes are adjustable to a variety of vane angles with values of phi = 0, 38, 45, 60 and 70 degrees being emphasized.

  9. Multicolor symbology for remotely scannable 2D barcodes

    NASA Astrophysics Data System (ADS)

    Wissner-Gross, Alexander D.; Sullivan, Timothy M.

    2008-03-01

    There has been much recent interest in mobile systems for augmented reality. However, existing visual tagging solutions are not robust at the low resolutions typical of current camera phones or at the low solid angles needed for "across-the-room" reality augmentation. In this paper, we propose a new 2D barcode symbology that uses multiple colors in order to address these challenges. We present preliminary results, showing the detection of example barcodes in this scheme over a range of angles.

  10. 3D structures by 2D vibrational spectroscopy

    PubMed Central

    Remorino, Amanda; Hochstrasser, Robin M.

    2012-01-01

    Conspectus The development of experiments that can generate molecular movies of changing chemical structures is a major challenge for physical chemistry. But to realize this dream, we not only need to significantly improve existing approaches, but we also must invent new technologies .. Most of the known protein structures have been determined by X-ray diffraction and to lesser extent by NMR. Though powerful, X-ray diffraction presents limitations for acquiring time dependent structures. In the case of NMR, ultrafast equilibrium dynamics might be inferred from lineshapes, but the structures of conformations interconverting on such time scales are not realizable. This Account highlights two dimensional infrared spectroscopy (2D IR), in particular the 2D vibrational echo, as an approach to time resolved structure determination. We outline the use of the 2D IR method to completely determine the structure of a protein of the integrin family in a time window of few picoseconds. As a transmembrane protein, this class of structures has proved particularly challenging for the established structural methodologies of x-ray crystallography and NMR. We describe the challenges facing multidimensional spectroscopy and compare it with some other methods of structural biology. Then we succinctly discuss the basic principles of 2D IR methods as they relate to time domain and frequency domain experimental and theoretical properties required for protein structure determination. By means of the example of the transmembrane protein, we describe the essential aspects of combined carbon-13 oxygen-18 isotope labels to create vibrational resonance pairs that allow the determination of protein and peptide structures in motion. Finally, we propose a three dimensional structure of the ?IIb transmembrane homodimer that includes optimum locations of all side chains and backbone atoms of the protein. Delocalization among 13C=18O residues on different helices. The vibrational excitation is transferred between modes on different helices on the coherent energy transfer time ?/2?. PMID:22458539

  11. NASA High-Speed 2D Photogrammetric Measurement System

    NASA Technical Reports Server (NTRS)

    Dismond, Harriett R.

    2012-01-01

    The object of this report is to provide users of the NASA high-speed 2D photogrammetric measurement system with procedures required to obtain drop-model trajectory and impact data for full-scale and sub-scale models. This guide focuses on use of the system for vertical drop testing at the NASA Langley Landing and Impact Research (LandIR) Facility.

  12. Interferometric 2D and 3D tomography of photoelastic media

    NASA Astrophysics Data System (ADS)

    Patrickeyev, Igor; Shakhurdin, Valintin I.

    2000-04-01

    The experimental study of mechanical stress distribution in biological tissues in-vivo is of interest for some biomedical applications. This work considers the problem of light and stressed tissue interaction and the inverse problem of stress field reconstruction in 2D and 3D cases. Optical tomography is one of the most promising methods of solving these problems. This technique involves the reconstruction of the refractive index field using the measurement of waveform distortion. The reconstruction of stress field requires establishing the relation of the stress tensor to the variation of refraction index. A simple photoelastic model is a reasonable first approximation due to normal functioning of biological tissue. The simple photoelastic model is a reasonable first approximation due to normal functioning of biological tissue. The propagation equation that describes the light propagation through the optically active elastic media obtained in the solving of the forward problem in terms of geometric optics approach. Interferometric, shlieren and depolarization methods of experimental data acquisition are considered. In general, 3D state of a stressed tissue should be described by six components of the stress tensor, but only three propagation equations appear to be independent. To close the system of equations, we have used three partial differential equilibrium equations with appropriate boundary conditions. The system of equations of interferometric tomography is studied in detail. In this case, the separation of stress tensor components results from analytical solving in the Radon domain. For special case of 2D deformation we need only one propagation equation and two equilibrium equations. It is shown that 3D problem can not be reduced to 2D problem in the general case of tensor field tomography. This sends us in search of special 3D algorithms. The use of wavelets is one of perspective ways of tomographic reconstruction under strong noise. 2D and 3D algorithms of the inverse Radon transform through inverse wavelet transform in noisy conditions have been developed.

  13. 2D Hybrid Nanostructured Dirac Materials for Broadband Transparent Electrodes.

    PubMed

    Guo, Yunfan; Lin, Li; Zhao, Shuli; Deng, Bing; Chen, Hongliang; Ma, Bangjun; Wu, Jinxiong; Yin, Jianbo; Liu, Zhongfan; Peng, Hailin

    2015-08-01

    Broadband transparent electrodes based on 2D hybrid nanostructured Dirac materials between Bi2 Se3 and graphene are synthesized using a chemical vapor deposition (CVD) method. Bi2 Se3 nanoplates are preferentially grown along graphene grain boundaries as "smart" conductive patches to bridge the graphene boundary. These hybrid films increase by one- to threefold in conductivity while remaining highly transparent over broadband wavelength. They also display outstanding chemical stability and mechanical flexibility. PMID:26079564

  14. Statistical analysis of quiet stance sway in 2-D

    PubMed Central

    DiZio, Paul; Lackner, James R.

    2014-01-01

    Subjects exposed to a rotating environment that perturbs their postural sway show adaptive changes in their voluntary spatially directed postural motion to restore accurate movement paths but do not exhibit any obvious learning during passive stance. We have found, however, that a variable known to characterize the degree of stochasticity in quiet stance can also reveal subtle learning phenomena in passive stance. We extended Chow and Collins (Phys Rev E 52(1):909–912, 1995) one-dimensional pinned-polymer model (PPM) to two dimensions (2-D) and then evaluated the model’s ability to make analytical predictions for 2-D quiet stance. To test the model, we tracked center of mass and centers of foot pressures, and compared and contrasted stance sway for the anterior–posterior versus medio-lateral directions before, during, and after exposure to rotation at 10 rpm. Sway of the body during rotation generated Coriolis forces that acted perpendicular to the direction of sway. We found significant adaptive changes for three characteristic features of the mean square displacement (MSD) function: the exponent of the power law defined at short time scales, the proportionality constant of the power law, and the saturation plateau value defined at longer time scales. The exponent of the power law of MSD at a short time scale lies within the bounds predicted by the 2-D PPM. The change in MSD during exposure to rotation also had a power-law exponent in the range predicted by the theoretical model. We discuss the Coriolis force paradigm for studying postural and movement control and the applicability of the PPM model in 2-D for studying postural adaptation. PMID:24477760

  15. Report of the 1988 2-D Intercomparison Workshop, chapter 3

    NASA Technical Reports Server (NTRS)

    Jackman, Charles H.; Brasseur, Guy; Soloman, Susan; Guthrie, Paul D.; Garcia, Rolando; Yung, Yuk L.; Gray, Lesley J.; Tung, K. K.; Ko, Malcolm K. W.; Isaken, Ivar

    1989-01-01

    Several factors contribute to the errors encountered. With the exception of the line-by-line model, all of the models employ simplifying assumptions that place fundamental limits on their accuracy and range of validity. For example, all 2-D modeling groups use the diffusivity factor approximation. This approximation produces little error in tropospheric H2O and CO2 cooling rates, but can produce significant errors in CO2 and O3 cooling rates at the stratopause. All models suffer from fundamental uncertainties in shapes and strengths of spectral lines. Thermal flux algorithms being used in 2-D tracer tranport models produce cooling rates that differ by as much as 40 percent for the same input model atmosphere. Disagreements of this magnitude are important since the thermal cooling rates must be subtracted from the almost-equal solar heating rates to derive the net radiative heating rates and the 2-D model diabatic circulation. For much of the annual cycle, the net radiative heating rates are comparable in magnitude to the cooling rate differences described. Many of the models underestimate the cooling rates in the middle and lower stratosphere. The consequences of these errors for the net heating rates and the diabatic circulation will depend on their meridional structure, which was not tested here. Other models underestimate the cooling near 1 mbar. Suchs errors pose potential problems for future interactive ozone assessment studies, since they could produce artificially-high temperatures and increased O3 destruction at these levels. These concerns suggest that a great deal of work is needed to improve the performance of thermal cooling rate algorithms used in the 2-D tracer transport models.

  16. Flow transitions in a 2D directional solidification model

    NASA Technical Reports Server (NTRS)

    Larroude, Philippe; Ouazzani, Jalil; Alexander, J. Iwan D.

    1992-01-01

    Flow transitions in a Two Dimensional (2D) model of crystal growth were examined using the Bridgman-Stockbarger me thod. Using a pseudo-spectral Chebyshev collocation method, the governing equations yield solutions which exhibit a symmetry breaking flow tansition and oscillatory behavior indicative of a Hopf bifurcation at higher values of Ra. The results are discussed from fluid dynamic viewpoint, and broader implications for process models are also addressed.

  17. Valley and electric photocurrents in 2D silicon and graphene

    SciTech Connect

    Tarasenko, S. A.; Ivchenko, E. L.; Olbrich, P.; Ganichev, S. D.

    2013-12-04

    We show that the optical excitation of multi-valley systems leads to valley currents which depend on the light polarization. The net electric current, determined by the vector sum of single-valley contributions, vanishes for some peculiar distributions of carriers in the valley and momentum spaces forming a pure valley current. We report on the study of this phenomenon, both experimental and theoretical, for graphene and 2D electron channels on the silicon surface.

  18. Crystal structure of human cytochrome P450 2D6.

    PubMed

    Rowland, Paul; Blaney, Frank E; Smyth, Martin G; Jones, Jo J; Leydon, Vaughan R; Oxbrow, Amanda K; Lewis, Ceri J; Tennant, Mike G; Modi, Sandeep; Eggleston, Drake S; Chenery, Richard J; Bridges, Angela M

    2006-03-17

    Cytochrome P450 2D6 is a heme-containing enzyme that is responsible for the metabolism of at least 20% of known drugs. Substrates of 2D6 typically contain a basic nitrogen and a planar aromatic ring. The crystal structure of human 2D6 has been solved and refined to 3.0A resolution. The structure shows the characteristic P450 fold as seen in other members of the family, with the lengths and orientations of the individual secondary structural elements being very similar to those seen in 2C9. There are, however, several important differences, the most notable involving the F helix, the F-G loop, the B'helix, beta sheet 4, and part of beta sheet 1, all of which are situated on the distal face of the protein. The 2D6 structure has a well defined active site cavity above the heme group, containing many important residues that have been implicated in substrate recognition and binding, including Asp-301, Glu-216, Phe-483, and Phe-120. The crystal structure helps to explain how Asp-301, Glu-216, and Phe-483 can act as substrate binding residues and suggests that the role of Phe-120 is to control the orientation of the aromatic ring found in most substrates with respect to the heme. The structure has been compared with published homology models and has been used to explain much of the reported site-directed mutagenesis data and help understand the metabolism of several compounds. PMID:16352597

  19. The Kubo-Greenwood expression and 2d MIT transport

    NASA Astrophysics Data System (ADS)

    Castner, Theodore

    2010-03-01

    The 2d MIT in GaAs heterostructures (p- and n-type)features a mobility that drops continuously as the reduced density x= n/nc-1 is decreased. The Kubo-Greenwood result [1] predicts μ = (eɛh/hnc)α^2(x) where α is a normalized DOS. α(x)is obtained from the data [p-type, Gao et al. [2]; n-type Lilly et al. [3

  20. Universal Fabrication of 2D Electron Systems in Functional Oxides.

    PubMed

    Rödel, Tobias Chris; Fortuna, Franck; Sengupta, Shamashis; Frantzeskakis, Emmanouil; Fèvre, Patrick Le; Bertran, François; Mercey, Bernard; Matzen, Sylvia; Agnus, Guillaume; Maroutian, Thomas; Lecoeur, Philippe; Santander-Syro, Andrés Felipe

    2016-03-01

    2D electron systems (2DESs) in functional oxides are promising for applications, but their fabrication and use, essentially limited to SrTiO3 -based heterostructures, are hampered by the need for growing complex oxide overlayers thicker than 2 nm using evolved techniques. It is demonstrated that thermal deposition of a monolayer of an elementary reducing agent suffices to create 2DESs in numerous oxides. PMID:26753522

  1. Two-dimensional electromagnetic cloaks with arbitrary geometries.

    PubMed

    Li, Chao; Li, Fang

    2008-08-18

    Transformation optics opens an exciting gateway to design electromagnetic "invisibility" cloaks with anisotropic and inhomogeneous medium. In this paper, we establish a generalized transformation procedure to highly improve the flexibilities for the design of two-dimensional (2D) cloaks. The general expressions for the complex medium parameters are developed, which can be readily applied to design 2D cloaks with arbitrary geometries. An example of 2D cloak with irregular cross section is designed and studied by full-wave simulations. The Huygens' Principle is applied to quantitatively evaluate its unusual electromagnetic behaviors. All the theoretical and numerical results verify the effectiveness of the proposed approach. The generalization in this Paper makes a great step forward for the flexible design of electromagnetic cloaks with arbitrary shapes. PMID:18711580

  2. Toward naturalistic 2D-to-3D conversion.

    PubMed

    Huang, Weicheng; Cao, Xun; Lu, Ke; Dai, Qionghai; Bovik, Alan Conrad

    2015-02-01

    Natural scene statistics (NSSs) models have been developed that make it possible to impose useful perceptually relevant priors on the luminance, colors, and depth maps of natural scenes. We show that these models can be used to develop 3D content creation algorithms that can convert monocular 2D videos into statistically natural 3D-viewable videos. First, accurate depth information on key frames is obtained via human annotation. Then, both forward and backward motion vectors are estimated and compared to decide the initial depth values, and a compensation process is applied to further improve the depth initialization. Then, the luminance/chrominance and initial depth map are decomposed by a Gabor filter bank. Each subband of depth is modeled to produce a NSS prior term. The statistical color-depth priors are combined with the spatial smoothness constraint in the depth propagation target function as a prior regularizing term. The final depth map associated with each frame of the input 2D video is optimized by minimizing the target function over all subbands. In the end, stereoscopic frames are rendered from the color frames and their associated depth maps. We evaluated the quality of the generated 3D videos using both subjective and objective quality assessment methods. The experimental results obtained on various sequences show that the presented method outperforms several state-of-the-art 2D-to-3D conversion methods. PMID:25546859

  3. Volumetric elasticity imaging with a 2-D CMUT array.

    PubMed

    Fisher, Ted G; Hall, Timothy J; Panda, Satchi; Richards, Michael S; Barbone, Paul E; Jiang, Jingfeng; Resnick, Jeff; Barnes, Steve

    2010-06-01

    This article reports the use of a two-dimensional (2-D) capacitive micro-machined ultrasound transducer (CMUT) to acquire radio-frequency (RF) echo data from relatively large volumes of a simple ultrasound phantom to compare three-dimensional (3-D) elasticity imaging methods. Typical 2-D motion tracking for elasticity image formation was compared with three different methods of 3-D motion tracking, with sum-squared difference (SSD) used as the similarity measure. Differences among the algorithms were the degree to which they tracked elevational motion: not at all (2-D search), planar search, combination of multiple planes and plane independent guided search. The cross-correlation between the predeformation and motion-compensated postdeformation RF echo fields was used to quantify motion tracking accuracy. The lesion contrast-to-noise ratio was used to quantify image quality. Tracking accuracy and strain image quality generally improved with increased tracking sophistication. When used as input for a 3-D modulus reconstruction, high quality 3-D displacement estimates yielded accurate and low noise modulus reconstruction. PMID:20510188

  4. Volumetric Elasticity Imaging with a 2D CMUT Array

    PubMed Central

    Fisher, Ted G.; Hall, Timothy J.; Panda, Satchi; Richards, Michael S.; Barbone, Paul E.; Jiang, Jingfeng; Resnick, Jeff; Barnes, Steve

    2010-01-01

    This paper reports the use of a two-dimensional (2D) capacitive micro-machined ultrasound transducer (CMUT) to acquire radio frequency (RF) echo data from relatively large volumes of a simple ultrasound phantom to compare 3D elasticity imaging methods. Typical 2D motion tracking for elasticity image formation was compared to three different methods of 3D motion tracking, with sum-squared difference (SSD) used as the similarity measure. Differences among the algorithms were the degree to which they tracked elevational motion: not at all (2D search), planar search, combination of multiple planes, and plane independent guided search. The cross correlation between the pre-deformation and motion-compensated post-deformation RF echo fields was used to quantify motion tracking accuracy. The lesion contrast-to-noise ratio was used to quantify image quality. Tracking accuracy and strain image quality generally improved with increased tracking sophistication. When used as input for a 3D modulus reconstruction, high quality 3D displacement estimates yielded accurate and low noise modulus reconstruction. PMID:20510188

  5. 2D luminescence imaging of pH in vivo

    PubMed Central

    Schreml, Stephan; Meier, Robert J.; Wolfbeis, Otto S.; Landthaler, Michael; Szeimies, Rolf-Markus; Babilas, Philipp

    2011-01-01

    Luminescence imaging of biological parameters is an emerging field in biomedical sciences. Tools to study 2D pH distribution are needed to gain new insights into complex disease processes, such as wound healing and tumor metabolism. In recent years, luminescence-based methods for pH measurement have been developed. However, for in vivo applications, especially for studies on humans, biocompatibility and reliability under varying conditions have to be ensured. Here, we present a referenced luminescent sensor for 2D high-resolution imaging of pH in vivo. The ratiometric sensing scheme is based on time-domain luminescence imaging of FITC and ruthenium(II)tris-(4,7-diphenyl-1,10-phenanthroline). To create a biocompatible 2D sensor, these dyes were bound to or incorporated into microparticles (aminocellulose and polyacrylonitrile), and particles were immobilized in polyurethane hydrogel on transparent foils. We show sensor precision and validity by conducting in vitro and in vivo experiments, and we show the versatility in imaging pH during physiological and chronic cutaneous wound healing in humans. Implementation of this technique may open vistas in wound healing, tumor biology, and other biomedical fields. PMID:21262842

  6. An Intercomparison of 2-D Models Within a Common Framework

    NASA Technical Reports Server (NTRS)

    Weisenstein, Debra K.; Ko, Malcolm K. W.; Scott, Courtney J.; Jackman, Charles H.; Fleming, Eric L.; Considine, David B.; Kinnison, Douglas E.; Connell, Peter S.; Rotman, Douglas A.; Bhartia, P. K. (Technical Monitor)

    2002-01-01

    A model intercomparison among the Atmospheric and Environmental Research (AER) 2-D model, the Goddard Space Flight Center (GSFC) 2-D model, and the Lawrence Livermore National Laboratory 2-D model allows us to separate differences due to model transport from those due to the model's chemical formulation. This is accomplished by constructing two hybrid models incorporating the transport parameters of the GSFC and LLNL models within the AER model framework. By comparing the results from the native models (AER and e.g. GSFC) with those from the hybrid model (e.g. AER chemistry with GSFC transport), differences due to chemistry and transport can be identified. For the analysis, we examined an inert tracer whose emission pattern is based on emission from a High Speed Civil Transport (HSCT) fleet; distributions of trace species in the 2015 atmosphere; and the response of stratospheric ozone to an HSCT fleet. Differences in NO(y) in the upper stratosphere are found between models with identical transport, implying different model representations of atmospheric chemical processes. The response of O3 concentration to HSCT aircraft emissions differs in the models from both transport-dominated differences in the HSCT-induced perturbations of H2O and NO(y) as well as from differences in the model represent at ions of O3 chemical processes. The model formulations of cold polar processes are found to be the most significant factor in creating large differences in the calculated ozone perturbations

  7. Elastic coupling between the layers in 2D films

    NASA Astrophysics Data System (ADS)

    Gao, Yang; Zhou, Si; Kim, Suenne; Chiu, Hsian-Chih; Nlias, Daniel; Berger, Claire; de Heer, Walt; Sordan, Roman; Polloni, Laura; Bongiorno, Angelo; Riedo, Elisa

    2015-03-01

    Two-dimensional (2D) materials, such as graphene and graphene oxide, are a few-atomic-layer thick films with strong in-plane bonds and much weaker inter-layer interactions. While their in-plane elasticity has been widely studied in bending experiments where a suspended film is largely deformed, very little is known about their elastic modulus perpendicular to the planes. Investigations of the out-of-plane elasticity require indenting supported 2D films less than their interlayer distance. Here, we report on sub--resolution indentation measurements of the perpendicular elasticity of 2D materials. Experiments, combined with semi-analytical models and density functional theory are used to study the perpendicular elasticity of a few-layers thick graphene and graphene oxide films. Interestingly, we find that the graphene oxide perpendicular Young's modulus reaches a maximum when one complete water layer is intercalated between the graphitic planes then the perpendicular Young's modulus decreases because a second water layer starts to form in between the layers further swelling and softening the GO structure.

  8. Continuous Doping of a Metallic Surface State in 2D.

    NASA Astrophysics Data System (ADS)

    Crain, J. N.; McChesney, J. L.; Himpsel, F. J.; Gallagher, M. C.

    2004-03-01

    Metallic surface states on semiconductors are the electronic equivalent of a two-dimensional (2D) electron gas in free space. These states at the Fermi energy are purely 2D since they cannot couple to bulk states. Compared with bulk bands, these surface states provide an opportunity to investigate much higher doping levels and explore the breakdown of low-density approximations. Metallic surfaces are uncommon on semiconductors, but several structures of noble metals on Si(111) have been discovered that are clearly metallic. Here we focus on the 2D Si(111)?3x?3-Ag structure. We have used angle-resolved photoemission with angular multi-detection to cover k-space with a very fine grid. The Si(111)?3x?3-Ag Fermi surface consists of small electron pockets populated by electrons from excess Ag at the surface. Excess Ag acts as an electron donor and thus Ag coverage controls band filling. We have measured the band structure of the electron pockets as a function of doping (0.0015 to 0.086 electrons per atom). At higher doping levels we find the rigid-band model breaks down. The effective mass of the bands change, and the bottom of the bands shift to lower energy and crosses the valence band maximum.

  9. 2D Cocrystallization from H-Bonded Organic Ferroelectrics.

    PubMed

    Kunkel, Donna A; Hooper, James; Bradley, Benjamin; Schlueter, Lisa; Rasmussen, Tom; Costa, Paulo; Beniwal, Sumit; Ducharme, Stephen; Zurek, Eva; Enders, Axel

    2016-02-01

    The synthesis of 2D H-bonded cocrystals from the room-temperature ferroelectric organics croconic acid (CA) and 3-hydroxyphenalenone (3-HPLN) is demonstrated through self-assembly on a substrate under ultrahigh vacuum. 2D cocrystal polymorphs of varied stoichiometry were identified with scanning tunneling microscopy, and one of the observed structural building blocks consists of two CA and two 3-HPLN molecules. Computational analysis with density functional theory confirmed that the experimental (CA)2(3-HPLN)2 tetramers are lower in energy than single-component structures due to the ability of the tetramers to pack efficiently in two dimensions, the promotion of favorable electrostatic interactions between tetramers, and the optimal number of intermolecular hydrogen bonds. The structures investigated, especially the experimentally found tetrameric building blocks, are not polar. However, it is demonstrated computationally that cocrystallization can, in principle, result in heterogeneous structures with dipole moments that exceed those of homogeneous structures and that 2D structures with select stoichiometries could favor metastable polar structures. PMID:26750982

  10. A 2D model for a gliding arc discharge

    NASA Astrophysics Data System (ADS)

    Kolev, St.; Bogaerts, A.

    2015-02-01

    In this study we report on a 2D fluid model of a gliding arc discharge in argon. Despite the 3D nature of the discharge, 2D models are found to be capable of providing very useful information about the operation of the discharge. We employ two modelsan axisymmetric and a Cartesian one. We show that for the considered experiment and the conditions of a low current arc (around 30 mA) in argon, there is no significant heating of the cathode surface and the discharge is sustained by field electron emission from the cathode accompanied by the formation of a cathode spot. The obtained discharge power and voltage are relatively sensitive to the surface properties and particularly to the surface roughness, causing effectively an amplification of the normal electric field. The arc body and anode region are not influenced by this and depend mainly on the current value. The gliding of the arc is modelled by means of a 2D Cartesian model. The arc-electrode contact points are analysed and the gliding mechanism along the electrode surface is discussed. Following experimental observations, the cathode spot is simulated as jumping from one point to another. A complete arc cycle is modelled from initial ignition to arc decay. The results show that there is no interaction between the successive gliding arcs.

  11. Cytochrome P450-2D6 Screening Among Elderly Using Antidepressants (CYSCE)

    ClinicalTrials.gov

    2015-12-09

    Depression; Depressive Disorder; Poor Metabolizer Due to Cytochrome P450 CYP2D6 Variant; Intermediate Metabolizer Due to Cytochrome P450 CYP2D6 Variant; Ultrarapid Metabolizer Due to Cytochrome P450 CYP2D6 Variant

  12. Application of collocation spectral domain decomposition method to solve radiative heat transfer in 2D partitioned domains

    NASA Astrophysics Data System (ADS)

    Chen, Shang-Shang; Li, Ben-Wen

    2014-12-01

    A collocation spectral domain decomposition method (CSDDM) based on the influence matrix technique is developed to solve radiative transfer problems within a participating medium of 2D partitioned domains. In this numerical approach, the spatial domains of interest are decomposed into rectangular sub-domains. The radiative transfer equation (RTE) in each sub-domain is angularly discretized by the discrete ordinates method (DOM) with the SRAPN quadrature scheme and then is solved by the CSDDM directly. Three test geometries that include square enclosure and two enclosures with one baffle and one centered obstruction are used to validate the accuracy of the developed method and their numerical results are compared to the data obtained by other researchers. These comparisons indicate that the CSDDM has a good accuracy for all solutions. Therefore this method can be considered as a useful approach for the solution of radiative heat transfer problems in 2D partitioned domains.

  13. Quantitative-phase-contrast imaging of a two-level surface described as a 2D linear filtering process.

    PubMed

    Lovicar, Luděk; Komrska, Jiří; Chmelík, Radim

    2010-09-27

    The paper deals with quantitative phase imaging of two-height-level surface reliefs. The imaging is considered to be a linear system and, consequently, the Fourier transform of the image is the product of the Fourier transform of a 2D function characterizing the surface and a specific 2D coherent transfer function. The Fourier transform of functions specifying periodic surface reliefs is factorized into two functions similar to lattice and structure amplitudes in crystal structure analysis. The approach to the imaging process described in the paper enables us to examine the dependence of the phase image on the surface geometry. Theoretical results are verified experimentally by means of a digital holographic microscope. PMID:20940953

  14. Improved 2-D resistivity imaging of features in covered karst terrain with arrays of implanted electrodes

    NASA Astrophysics Data System (ADS)

    Kiflu, H. G.; Kruse, S. E.; Harro, D.; Loke, M. H.; Wilkinson, P. B.

    2013-12-01

    Electrical resistivity tomography is commonly used to identify geologic features associated with sinkhole formation. In covered karst terrain, however, it can be difficult to resolve the depth to top of limestone with this method. This is due to the fact that array lengths, and hence depth of resolution, are often limited by residential or commercial lot dimensions in urban environments. Furthermore, the sediments mantling the limestone are often clay-rich and highly conductive. The resistivity method has limited sensitivity to resistive zones beneath conductive zones. This sensitivity can be improved significantly with electrodes implanted at depth in the cover sediments near the top of limestone. An array of deep electrodes is installed with direct push technology in the karst cover. When combined with a surface array in which each surface electrode is underlain by a deep electrode, the array geometry is similar to a borehole array turned on its side. This method, called the Multi-Electrode Resistivity Implant Technique (MERIT), offers the promise of significantly improved resolution of epikarst and cover collapse development zones in the overlying sediment, the limestone or at the sediment-bedrock interface in heterogeneous karst environments. With a non-traditional array design, the question of optimal array geometries arises. Optimizing array geometries is complicated by the fact that many plausible 4-electrode readings will produce negative apparent resistivity values, even in homogeneous terrain. Negative apparent resistivities cannot be used in inversions based on the logarithm of the apparent resistivity. New algorithms for seeking optimal array geometries have been developed by modifying the 'Compare R' method of Wilkinson and Loke. The optimized arrays show significantly improved resolution over basic arrays adapted from traditional 2D surface geometries. Several MERIT case study surveys have been conducted in covered karst in west-central Florida, with 28-electrode arrays with electrodes 2-5 meters apart, and the deep arrays buried at 4-8 meters depth. Ground penetrating radar surveys, SPT borings and coring data provide selected 'ground truthing'. The case studies show that inclusion of the deep electrode array permits karst features such as undulations at the top of limestone and raveling zones within surficial sediments to be imaged. These features are not accessible from surface arrays with equivalent surface footprints. The method also has better resolution at depth at the ends of the lines, where surface arrays are typically plotted with a trapezoidal truncation due to poor resolution at the lower corners of the profile.

  15. Graphene, other 2D atomic crystals and their heterostructures

    NASA Astrophysics Data System (ADS)

    Novoselov, Kostya S.

    2014-03-01

    Probably the most important ``property'' of graphene is that it has opened a floodgate of experiments on many other 2D atomic crystals: BN, NbSe2, TaS2, MoS2, etc. One can use similar strategies to those applied to graphene and obtain new materials by mechanical or liquid phase exfoliation of layered materials or CVD growth. An alternative strategy to create new 2D crystals is to start with an existing one (like graphene) and use it as an atomic scaffolding to modify it by chemical means (graphane and fluorographene are good examples). The resulting pool of 2D crystals is huge, and they cover a massive range of properties: from the most insulating to the most conductive, from the strongest to the softest. If 2D materials provide a large range of different properties, sandwich structures made up of 2, 3, 4 ...different layers of such materials can offer even greater scope. Since these 2D-based heterostructures can be tailored with atomic precision and individual layers of very different character can be combined together, - the properties of these structures can be tuned to study novel physical phenomena (Coulomb drag, Hostadter butterfly, metal-insulator transition, etc) or to fit an enormous range of possible applications, with the functionality of heterostructure stacks is ``embedded'' in their design (tunnelling or hot-electron transistors, photovoltaic devices). Of particular interest are the tunnelling structures. Being able to control the thickness with atomic precision and having a variety of different material in disposal allows us to modify both the height and the width of the tunnelling barrier in the wide range. The use of graphene as electrodes and utilising insulating (BN) or semiconducting (MoS2, WS2) materials as the tunnelling barrier led to the creation of tunnelling transistors and tunnelling photovoltaic devices and the observation of the resonance tunnelling associated with momentum conservation. We will also consider tunnelling in magnetic field and phonon-assisted tunnelling.

  16. Comprehensive 2-D chromatography of random and block methacrylate copolymers.

    PubMed

    van Hulst, Monique; van der Horst, Aschwin; Kok, Wim Th; Schoenmakers, Peter J

    2010-06-01

    A comprehensive 2-D separation method was developed for the characterization of methacrylate copolymers. In both dimensions conditions were employed that give a critical separation for the homopolymer of one of the monomers in the copolymer, and exclusion behaviour for the other. The 2-D separation was realized by using a normal-phase column in one dimension and a reversed phase column in the other, and by precisely tuning the compositions of the two mobile phases employed. In the normal-phase dimension mixtures of THF and n-hexane or n-heptane were used as mobile phase, and in the reversed-phase dimension mixtures of ACN and THF. Moreover, stationary phase particles had to be selected for both columns that gave an exclusion window appropriate for the molecular size of the sample polymers to be characterized. The 2-D critical chromatography principle was tested with a polystyrene (PS)-polymethylmethacrylate (PMMA) block copolymer and with block and random polybutylmethacrylate (PBMA)-PMMA copolymers. Ideally, the retention time for a copolymer in both dimensions of this system would depend on the size of only one of the blocks, or on the contribution of only one of the monomers to the size of a random copolymer. However, it was found that the elution of the PS-PMMA block copolymer depended on the size of both blocks, even when the corresponding homopolymer of one of the monomers showed critical elution behaviour. Therefore, the method could not be calibrated for block sizes by using homopolymer standards alone. Still, it was shown that the method can be used to determine differences between samples (PS-PMMA and PBMA-PMMA) with respect to total molecular size or block sizes separately, or to average size and chemical composition for random copolymers. Block and random PBMA-PMMA copolymers showed a distinctly different pattern in the 2-D plots obtained with 2-D critical chromatography. This difference was shown to be related to the different procedures followed in the polymerization process, and the different molecular distributions resulting from these. PMID:20309901

  17. Computational analysis of two-fluid edge plasma stability in tokamak geometries

    NASA Astrophysics Data System (ADS)

    Neiser, Tom; Baver, Derek; Carter, Troy; Myra, Jim; Snyder, Phil; Umansky, Maxim

    2013-10-01

    In H-mode, the edge pressure gradient is disrupted quasi-periodically by Edge Localized Modes (ELMs), which leads to confinement loss and places large heat loads on the divertor. This poster gives an overview of the peeling-ballooning model for ELM formation and presents recent results of 2DX, a fast eigenvalue code capable of solving equations of any fluid model. We use 2DX to solve reduced ideal MHD equations of two-fluid plasma in the R-Z plane, with toroidal mode number resolving the third dimension. Previously, 2DX has been successfully benchmarked against ELITE and BOUT + + for ballooning dominated cases in simple shifted circle geometries. We present follow-up work in simple geometry as well as similar benchmarks for full X-point geometry of DIII-D. We demonstrate 2DX's capability as computational tool that supports nonlinear codes with linear verification and as experimental tool to identify density limits, map the spatial distribution of eigenmodes and investigate marginal stability of the edge region.

  18. Migrating from 2D to 3D in "Autograph"

    ERIC Educational Resources Information Center

    Butler, Douglas

    2006-01-01

    With both "Cabri" and "Autograph" now venturing into 3D, the dimension that previously was only demonstrated in the classroom with a lot of arm waving and crude wire cages can now be explored dynamically on screen. "Cabri 3D" concentrates on constructions, using the principles of Euclidian geometry, whereas "Autograph" creates objects using a

  19. New Design of Integrated 2D Photonic Crystal Narrow Band Filters Using the FDTD-2D Method

    NASA Astrophysics Data System (ADS)

    Badaoui, Hadjira Abri; Abri, Mehadji

    2014-11-01

    In this paper, integrated 2D photonic crystal narrow band filter design is achieved based on transmission spectra shift. The presented effective technique for the design of narrow band resonant filters obtained by one-missing-row and by choosing proper radii of air holes of the waveguide is proposed. The 2D photonic crystals are designed by utilizing cascaded waveguides with different radii of air holes. The results are presented for normal incident wave with TE polarizations with a narrow spectral bandwidth centered at ? = 1.55 ?m. We also discuss the filtering process and its necessary modifications to achieve efficient filtering. A final synthesized filter topology is presented and a band from 1.53 ?m to 1.57 ?m around 1.55 ?m is transmitted with a maximum transmission of about 77% with better performances is achieved.

  20. Geometry for the Secondary School

    ERIC Educational Resources Information Center

    Moalem, D.

    1977-01-01

    A sequential but non-axiomatic high school geometry course which includes Euclidean, transformation, and analytic geometry and vectors and matrices, and emphasizes the invariance property of transformations, is outlined. Sample problems, solutions, and comments are included. (MN)

  1. The Geometry of Generations

    NASA Astrophysics Data System (ADS)

    He, Yang-Hui; Jejjala, Vishnu; Matti, Cyril; Nelson, Brent D.; Stillman, Michael

    2015-10-01

    We present an intriguing and precise interplay between algebraic geometry and the phenomenology of generations of particles. Using the electroweak sector of the MSSM as a testing ground, we compute the moduli space of vacua as an algebraic variety for multiple generations of Standard Model matter and Higgs doublets. The space is shown to have Calabi-Yau, Grassmannian, and toric signatures, which sensitively depend on the number of generations of leptons, as well as inclusion of Majorana mass terms for right-handed neutrinos. We speculate as to why three generations is special.

  2. DRC2: A code with specialized applications for coupling localized Monte Carlo adjoint calculations with fluences from two-dimensional R-Z discrete ordinates air-over-ground calculations

    SciTech Connect

    Slater, C.O.

    1992-01-01

    The DRC2 code, which couples MASH or MASHX adjoint leakages with DORT 2-D discrete ordinates forward directional fluences, is described. The forward fluences are allowed to vary both axially and radially over the coupling surface, as opposed to the strictly axial variation allowed by the predecessor DRC code. Input instructions are presented along with descriptions and results from several sample problems. Results from the sample problems are used to compare DRC2 with DRC, DRC2 with DORT, and DRC2 with itself for the case of x-y dependence versus no x-y dependence of the forward fluence. The test problems demonstrate that for small systems DRC and DRC2 give essentially the same results. Some significant differences are noted for larger systems. Additionally, DRC2 results with no x-y dependence of the forward directional fluences are practically the same as those calculated by DRC.

  3. Solution conformation of 2-aminopurine (2-AP) dinucleotide determined by ultraviolet 2D fluorescence spectroscopy (UV-2D FS)

    PubMed Central

    Widom, Julia R.; Johnson, Neil P.; von Hippel, Peter H.; Marcus, Andrew H.

    2013-01-01

    We have observed the conformation-dependent electronic coupling between the monomeric subunits of a dinucleotide of 2-aminopurine (2-AP), a fluorescent analog of the nucleic acid base adenine. This was accomplished by extending two-dimensional fluorescence spectroscopy (2D FS) a fluorescence-detected variation of 2D electronic spectroscopy to excite molecular transitions in the ultraviolet (UV) regime. A collinear sequence of four ultrafast laser pulses centered at 323 nm was used to resonantly excite the coupled transitions of 2-AP dinucleotide. The phases of the optical pulses were continuously swept at kilohertz frequencies, and the ensuing nonlinear fluorescence was phase-synchronously detected at 370 nm. Upon optimization of a point-dipole coupling model to our data, we found that in aqueous buffer the 2-AP dinucleotide adopts an average conformation in which the purine bases are non-helically stacked (center-to-center distance R12 = 3.5 0.5 , twist angle ?12 = 5 5), which differs from the conformation of such adjacent bases in duplex DNA. These experiments establish UV-2D FS as a method for examining the local conformations of an adjacent pair of fluorescent nucleotides substituted into specific DNA or RNA constructs, which will serve as a powerful probe to interpret, in structural terms, biologically significant local conformational changes within the nucleic acid framework of protein-nucleic acid complexes. PMID:24223491

  4. 2D or Not 2D: The Effect of Dimensionality on the Dynamics of Fingering Convection at Low Prandtl Number

    NASA Astrophysics Data System (ADS)

    Garaud, Pascale; Brummell, Nicholas

    2015-12-01

    Fingering convection (otherwise known as thermohaline convection) is an instability that occurs in stellar radiative interiors in the presence of unstable compositional gradients. Numerical simulations have been used in order to estimate the efficiency of mixing induced by this instability. However, fully three-dimensional (3D) computations in the parameter regime appropriate for stellar astrophysics (i.e., low Prandtl number) are prohibitively expensive. This raises the question of whether two-dimensional (2D) simulations could be used instead to achieve the same goals. In this work, we address this issue by comparing the outcome of 2D and 3D simulations of fingering convection at low Prandtl number. We find that 2D simulations are never appropriate. However, we also find that the required 3D computational domain does not have to be very wide: the third dimension only needs to contain a minimum of two wavelengths of the fastest-growing linearly unstable mode to capture the essentially 3D dynamics of small-scale fingering. Narrow domains, however, should still be used with caution since they could limit the subsequent development of any large-scale dynamics typically associated with fingering convection.

  5. Imaging-based amplitude laser beam shaping for material processing by 2D reflectivity tuning of a spatial light modulator.

    PubMed

    Li, Jiangning; Kuang, Zheng; Edwardson, Stuart; Perrie, Walter; Liu, Dun; Dearden, Geoff

    2016-02-10

    We have demonstrated an imaging-based amplitude laser-beam-shaping technique for material processing by 2D reflectivity tuning of a spatial light modulator. Intensity masks with 256 gray levels were designed to shape the input laser beam in the outline profile and inside intensity distribution. Squared and circular flattop beam shapes were obtained at the diffractive near-field and then reconstructed at an image plane of an f-theta lens (f∼100  mm). The observed intensity distribution inside the beam-shaping geometry was much more even than using binary masks. The ablation footprint well matches the desired beam shape. PMID:26906382

  6. Transport Equations Resolution By N-BEE Anti-Dissipative Scheme In 2D Model Of Low Pressure Glow Discharge

    SciTech Connect

    Kraloua, B.; Hennad, A.

    2008-09-23

    The aim of this paper is to determine electric and physical properties by 2D modelling of glow discharge low pressure in continuous regime maintained by term constant source. This electric discharge is confined in reactor plan-parallel geometry. This reactor is filled by Argon monatomic gas. Our continuum model the order two is composed the first three moments the Boltzmann's equations coupled with Poisson's equation by self consistent method. These transport equations are discretized by the finite volumes method. The equations system is resolved by a new technique, it is about the N-BEE explicit scheme using the time splitting method.

  7. Graded geometry and Poisson reduction

    SciTech Connect

    Cattaneo, A. S.; Zambon, M.

    2009-02-02

    The main result extends the Marsden-Ratiu reduction theorem in Poisson geometry, and is proven by means of graded geometry. In this note we provide the background material about graded geometry necessary for the proof. Further, we provide an alternative algebraic proof for the main result.

  8. Computer-Aided Geometry Modeling

    NASA Technical Reports Server (NTRS)

    Shoosmith, J. N. (Compiler); Fulton, R. E. (Compiler)

    1984-01-01

    Techniques in computer-aided geometry modeling and their application are addressed. Mathematical modeling, solid geometry models, management of geometric data, development of geometry standards, and interactive and graphic procedures are discussed. The applications include aeronautical and aerospace structures design, fluid flow modeling, and gas turbine design.

  9. Cloning and characterization of a novel human phosphatidic acid phosphatase type 2, PAP2d, with two different transcripts PAP2d_v1 and PAP2d_v2.

    PubMed

    Sun, Liyun; Gu, Shaohua; Sun, Yaqiong; Zheng, Dan; Wu, Qihan; Li, Xin; Dai, Jianfeng; Dai, Jianliang; Ji, Chaoneng; Xie, Yi; Mao, Yumin

    2005-04-01

    This study reports the cloning and characterization of a novel human phosphatidic acid phosphatase type 2 isoform cDNAs (PAP2d) from the foetal brain cDNA library. The PAP2d gene is localized on chromosome 1p21.3. It contains six exons and spans 112 kb of the genomic DNA. By large-scale cDNA sequencing we found two splice variants of PAP2d, PAP2d_v1 and PAP2d_v2. The PAP2d_v1 cDNA is 1722 bp in length and spans an open reading frame from nucleotide 56 to 1021, encoding a 321aa protein. The PAP2d_v2 cDNA is 1707 bp in length encoding a 316aa protein from nucleotide 56-1006. The PAP2d_v1 cDNA is 15 bp longer than the PAP2d_v2 cDNA in the terminal of the fifth exon and it creates different ORF. Both of the proteins contain a well-conserved PAP2 motif. The PAP2d_v1 is mainly expressed in human brain, lung, kidney, testis and colon, while PAP2d_v2 is restricted to human placenta, skeletal muscle, and kidney. The two splice variants are co-expressed only in kidney. PMID:16010976

  10. Polymers in Confined Geometry

    NASA Astrophysics Data System (ADS)

    Brochard-Wyart, Francoise

    2008-03-01

    Thanks to P. G. de Genne's famous ``n = 0'' theorem (relating the configuration of a polymer chain to a magnetic phase transition with an order parameter of n = 0 component), the swelling exponent ? (R=N^?a) was calculated in terms of space dimension d and fitted the qualitative Flory calculation. Using scaling laws, or the ``blob'' picture, it became possible to derive the conformation of a chain confined in a tube or a slit. The dynamics of confined polymers followed immediately. The new feature was the screening of the hydrodynamic interactions in confined geometry leading to Rouse-like behaviour. In a third step, de Gennes focused on the forced penetration of polymers (linear, branched, stars, neutral or charged) in narrow tubes, when they are submitted to a flow (or an electrical field for DNA). From all these calculations, the conclusion was that the threshold velocity (or field) corresponds to the penetration of the first blob. Afterwards, the friction force increases linearly with the penetrated length, whereas the confinement force remains constant. In the last few years, with his collaboration we studied the penetration of DNA in ``soft'' tubes. We predicted a transition from extended to globular DNA observed experimentally. We also showed that semi flexible polymer chains, like DNA, are ideal in 3d, but swollen effects are more pronounced in confined geometries. We will also discuss experiments inspired by his work on confined polymers, in the last thirty years.

  11. Geometry of Quantum States

    NASA Astrophysics Data System (ADS)

    Bengtsson, Ingemar; Zyczkowski, Karol

    2006-05-01

    Quantum information theory is at the frontiers of physics, mathematics and information science, offering a variety of solutions that are impossible using classical theory. This book provides an introduction to the key concepts used in processing quantum information and reveals that quantum mechanics is a generalisation of classical probability theory. After a gentle introduction to the necessary mathematics the authors describe the geometry of quantum state spaces. Focusing on finite dimensional Hilbert spaces, they discuss the statistical distance measures and entropies used in quantum theory. The final part of the book is devoted to quantum entanglement - a non-intuitive phenomenon discovered by Schrdinger, which has become a key resource for quantum computation. This richly-illustrated book is useful to a broad audience of graduates and researchers interested in quantum information theory. Exercises follow each chapter, with hints and answers supplied. The first book to focus on the geometry of quantum states Stresses the similarities and differences between classical and quantum theory Uses a non-technical style and numerous figures to make the book accessible to non-specialists

  12. 2D Seismic Reflection Data across Central Illinois

    SciTech Connect

    Smith, Valerie; Leetaru, Hannes

    2014-09-30

    In a continuing collaboration with the Midwest Geologic Sequestration Consortium (MGSC) on the Evaluation of the Carbon Sequestration Potential of the Cambro-Ordovician Strata of the Illinois and Michigan Basins project, Schlumberger Carbon Services and WesternGeco acquired two-dimensional (2D) seismic data in the Illinois Basin. This work included the design, acquisition and processing of approximately 125 miles of (2D) seismic reflection surveys running west to east in the central Illinois Basin. Schlumberger Carbon Services and WesternGeco oversaw the management of the field operations (including a pre-shoot planning, mobilization, acquisition and de-mobilization of the field personnel and equipment), procurement of the necessary permits to conduct the survey, post-shoot closure, processing of the raw data, and provided expert consultation as needed in the interpretation of the delivered product. Three 2D seismic lines were acquired across central Illinois during November and December 2010 and January 2011. Traversing the Illinois Basin, this 2D seismic survey was designed to image the stratigraphy of the Cambro-Ordovician sections and also to discern the basement topography. Prior to this survey, there were no regionally extensive 2D seismic data spanning this section of the Illinois Basin. Between the NW side of Morgan County and northwestern border of Douglas County, these seismic lines ran through very rural portions of the state. Starting in Morgan County, Line 101 was the longest at 93 miles in length and ended NE of Decatur, Illinois. Line 501 ran W-E from the Illinois Basin – Decatur Project (IBDP) site to northwestern Douglas County and was 25 miles in length. Line 601 was the shortest and ran N-S past the IBDP site and connected lines 101 and 501. All three lines are correlated to well logs at the IBDP site. Originally processed in 2011, the 2D seismic profiles exhibited a degradation of signal quality below ~400 millisecond (ms) which made interpretation of the Mt. Simon and Knox sections difficult. The data quality also gradually decreased moving westward across the state. To meet evolving project objectives, in 2012 the seismic data was re-processed using different techniques to enhance the signal quality thereby rendering a more coherent seismic profile for interpreters. It is believed that the seismic degradation could be caused by shallow natural gas deposits and Quaternary sediments (which include abandoned river and stream channels, former ponds, and swamps with peat deposits) that may have complicated or changed the seismic wavelet. Where previously limited by seismic coverage, the seismic profiles have provided valuable subsurface information across central Illinois. Some of the interpretations based on this survey included, but are not limited to: - Stratigraphy generally gently dips to the east from Morgan to Douglas County. - The Knox Supergroup roughly maintains its thickness. There is little evidence for faulting in the Knox. However, at least one resolvable fault penetrates the entire Knox section. - The Eau Claire Formation, the primary seal for the Mt. Simon Sandstone, appears to be continuous across the entire seismic profile. - The Mt. Simon Sandstone thins towards the western edge of the basin. As a result, the highly porous lowermost Mt. Simon section is absent in the western part of the state. - Overall basement dip is from west to east. - Basement topography shows evidence of basement highs with on-lapping patterns by Mt. Simon sediments. - There is evidence of faults within the lower Mt. Simon Sandstone and basement rock that are contemporaneous with Mt. Simon Sandstone deposition. These faults are not active and do not penetrate the Eau Claire Shale. It is believed that these faults are associated with a possible failed rifting event 750 to 560 million years ago during the breakup of the supercontinent Rodinia.

  13. 2D to 3D conversion implemented in different hardware

    NASA Astrophysics Data System (ADS)

    Ramos-Diaz, Eduardo; Gonzalez-Huitron, Victor; Ponomaryov, Volodymyr I.; Hernandez-Fragoso, Araceli

    2015-02-01

    Conversion of available 2D data for release in 3D content is a hot topic for providers and for success of the 3D applications, in general. It naturally completely relies on virtual view synthesis of a second view given by original 2D video. Disparity map (DM) estimation is a central task in 3D generation but still follows a very difficult problem for rendering novel images precisely. There exist different approaches in DM reconstruction, among them manually and semiautomatic methods that can produce high quality DMs but they demonstrate hard time consuming and are computationally expensive. In this paper, several hardware implementations of designed frameworks for an automatic 3D color video generation based on 2D real video sequence are proposed. The novel framework includes simultaneous processing of stereo pairs using the following blocks: CIE L*a*b* color space conversions, stereo matching via pyramidal scheme, color segmentation by k-means on an a*b* color plane, and adaptive post-filtering, DM estimation using stereo matching between left and right images (or neighboring frames in a video), adaptive post-filtering, and finally, the anaglyph 3D scene generation. Novel technique has been implemented on DSP TMS320DM648, Matlab's Simulink module over a PC with Windows 7, and using graphic card (NVIDIA Quadro K2000) demonstrating that the proposed approach can be applied in real-time processing mode. The time values needed, mean Similarity Structural Index Measure (SSIM) and Bad Matching Pixels (B) values for different hardware implementations (GPU, Single CPU, and DSP) are exposed in this paper.

  14. Human erythrocytes analyzed by generalized 2D Raman correlation spectroscopy

    NASA Astrophysics Data System (ADS)

    Wese?ucha-Birczy?ska, Aleksandra; Kozicki, Mateusz; Czepiel, Jacek; ?abanowska, Maria; Nowak, Piotr; Kowalczyk, Grzegorz; Kurdziel, Magdalena; Birczy?ska, Malwina; Biesiada, Gra?yna; Mach, Tomasz; Garlicki, Aleksander

    2014-07-01

    The most numerous elements of the blood cells, erythrocytes, consist mainly of two components: homogeneous interior filled with hemoglobin and closure which is the cell membrane. To gain insight into their specific properties we studied the process of disintegration, considering these two constituents, and comparing the natural aging process of human healthy blood cells. MicroRaman spectra of hemoglobin within the single RBC were recorded using 514.5, and 785 nm laser lines. The generalized 2D correlation method was applied to analyze the collected spectra. The time passed from blood donation was regarded as an external perturbation. The time was no more than 40 days according to the current storage limit of blood banks, although, the average RBC life span is 120 days. An analysis of the prominent synchronous and asynchronous cross peaks allow us to get insight into the mechanism of hemoglobin decomposition. Appearing asynchronous cross-peaks point towards globin and heme separation from each other, while synchronous shows already broken globin into individual amino acids. Raman scattering analysis of hemoglobin wrapping, i.e. healthy erythrocyte ghosts, allows for the following peculiarity of their behavior. The increasing power of the excitation laser induced alterations in the assemblage of membrane lipids. 2D correlation maps, obtained with increasing laser power recognized as an external perturbation, allows for the consideration of alterations in the erythrocyte membrane structure and composition, which occurs first in the proteins. Cross-peaks were observed indicating an asynchronous correlation between the senescent-cell antigen (SCA) and heme or proteins vibrations. The EPR spectra of the whole blood was analyzed regarding time as an external stimulus. The 2D correlation spectra points towards participation of the selected metal ion centers in the disintegration process.

  15. Towards automatic calibration of 2-D flood propagation models

    NASA Astrophysics Data System (ADS)

    Fabio, P.; Aronica, G. T.; Apel, H.

    2010-06-01

    Hydraulic models for flood propagation description are an essential tool in many fields and are used, for example, for flood hazard and risk assessments, evaluation of flood control measures, etc. Nowadays there are many models of different complexity regarding the mathematical foundation and spatial dimensions available, and most of them are comparatively easy to operate due to sophisticated tools for model setup and control. However, the calibration of these models is still underdeveloped in contrast to other models like e.g. hydrological models or models used in ecosystem analysis. This has two primary reasons: first, lack of relevant data against which the models can be calibrated, because flood events are very rarely monitored due to the disturbances inflicted by them and the lack of appropriate measuring equipment in place. Second, 2-D models are computationally very demanding and therefore the use of available sophisticated automatic calibration procedures is restricted in many cases. This study takes a well documented flood event in August 2002 at the Mulde River in Germany as an example and investigates the most appropriate calibration strategy for a simplified 2-D hyperbolic finite element model. The model independent optimiser PEST, that enables automatic calibrations without changing model code, is used and the model is calibrated against over 380 surveyed maximum water levels. The application of the parallel version of the optimiser showed that (a) it is possible to use automatic calibration in combination of 2-D hydraulic model, and (b) equifinality of model parameterisation can also be caused by a too large number of degrees of freedom in the calibration data in contrast to a too simple model setup. In order to improve model calibration and reduce equifinality, a method was developed to identify calibration data, resp. model setup with likely errors that obstruct model calibration.

  16. Progress in 2D photonic crystal Fano resonance photonics

    NASA Astrophysics Data System (ADS)

    Zhou, Weidong; Zhao, Deyin; Shuai, Yi-Chen; Yang, Hongjun; Chuwongin, Santhad; Chadha, Arvinder; Seo, Jung-Hun; Wang, Ken X.; Liu, Victor; Ma, Zhenqiang; Fan, Shanhui

    2014-01-01

    In contrast to a conventional symmetric Lorentzian resonance, Fano resonance is predominantly used to describe asymmetric-shaped resonances, which arise from the constructive and destructive interference of discrete resonance states with broadband continuum states. This phenomenon and the underlying mechanisms, being common and ubiquitous in many realms of physical sciences, can be found in a wide variety of nanophotonic structures and quantum systems, such as quantum dots, photonic crystals, plasmonics, and metamaterials. The asymmetric and steep dispersion of the Fano resonance profile promises applications for a wide range of photonic devices, such as optical filters, switches, sensors, broadband reflectors, lasers, detectors, slow-light and non-linear devices, etc. With advances in nanotechnology, impressive progress has been made in the emerging field of nanophotonic structures. One of the most attractive nanophotonic structures for integrated photonics is the two-dimensional photonic crystal slab (2D PCS), which can be integrated into a wide range of photonic devices. The objective of this manuscript is to provide an in depth review of the progress made in the general area of Fano resonance photonics, focusing on the photonic devices based on 2D PCS structures. General discussions are provided on the origins and characteristics of Fano resonances in 2D PCSs. A nanomembrane transfer printing fabrication technique is also reviewed, which is critical for the heterogeneous integrated Fano resonance photonics. The majority of the remaining sections review progress made on various photonic devices and structures, such as high quality factor filters, membrane reflectors, membrane lasers, detectors and sensors, as well as structures and phenomena related to Fano resonance slow light effect, nonlinearity, and optical forces in coupled PCSs. It is expected that further advances in the field will lead to more significant advances towards 3D integrated photonics, flat optics, and flexible optoelectronics, with lasting impact in areas ranging from computing, communications, to sensing and imaging systems.

  17. Unitary matrix models and 2D quantum gravity

    SciTech Connect

    Dalley, S. . Joseph Henry Labs.); Johnson, C.V.; Morris, T.R. . Dept. of Physics); Watterstam, A. )

    1992-09-21

    In this paper the KdV and modified KdV integrable hierarchies are shown to be different descriptions of the same 2D gravitational system - open-closed string theory. Non-perturbative solutions of the multicritical unitary matrix models map to non-singular solutions of the renormalization group equation for the string susceptibility, [P, Q] = Q. The authors also demonstrate that the large-N solutions of unitary matrix integrals in external fields, studied by Gross and Newman, equal the non-singular pure closed-string solutions of [[bar P], Q] = Q.

  18. Symmetries in non-perturbative 2-d quantum gravity

    SciTech Connect

    La, H. . Dept. of Physics)

    1991-03-07

    In this paper based on the Korteweg-de Vries (KdV) hierarchy formulation of non-perturbative 2-d quantum gravity, the authors investigate the symmetries of the system. Particularly, it is shown that the recently found Virasoro constraints are due to the non-isospectral symmetries of KdV hierarchy, which can be interpreted as SL(2, C) invariance and the independence of the moduli of the auxiliary infinite genus hyperelliptic Riemann surfaces which appear in the Krichever construction of soliton solutions.

  19. Recent update of the RPLUS2D/3D codes

    NASA Technical Reports Server (NTRS)

    Tsai, Y.-L. Peter

    1991-01-01

    The development of the RPLUS2D/3D codes is summarized. These codes utilize LU algorithms to solve chemical non-equilibrium flows in a body-fitted coordinate system. The motivation behind the development of these codes is the need to numerically predict chemical non-equilibrium flows for the National AeroSpace Plane Program. Recent improvements include vectorization method, blocking algorithms for geometric flexibility, out-of-core storage for large-size problems, and an LU-SW/UP combination for CPU-time efficiency and solution quality.

  20. Interplay between Anderson and Stark Localization in 2D Lattices

    SciTech Connect

    Kolovsky, A. R.

    2008-11-07

    This Letter studies the dynamics of a quantum particle in 2D lattices with on-site disorder in the presence of a static field. It is shown that the particle is localized along the field direction, while in the orthogonal direction to the field it shows diffusive dynamics for algebraically large times. For weak disorder an analytical expression for the diffusion coefficient is obtained by mapping the problem to a band random matrix. This expression is confirmed by numerical simulations of the particle's dynamics, which also indicate the existence of a universal equation for the diffusion coefficient, valid for an arbitrary disorder strength.

  1. Ultrathin 2D Metal-Organic Framework Nanosheets.

    PubMed

    Zhao, Meiting; Wang, Yixian; Ma, Qinglang; Huang, Ying; Zhang, Xiao; Ping, Jianfeng; Zhang, Zhicheng; Lu, Qipeng; Yu, Yifu; Xu, Huan; Zhao, Yanli; Zhang, Hua

    2015-12-01

    A facile surfactant-assisted bottom-up synthetic method to prepare a series of freestanding ultrathin 2D M-TCPP (M = Zn, Cu, Cd or Co, TCPP = tetrakis(4-carboxyphenyl)porphyrin) nanosheets with a thickness of sub-10 nm is developed. As a proof-of-concept application, some of them are successfully used as new platforms for DNA detection. The Cu-TCPP nanosheet-based sensor shows excellent fluorescent sensing performance and is used for the simultaneous detection of multiple DNA targets. PMID:26468970

  2. Black liquor gasification phase 2D final report

    SciTech Connect

    Kohl, A.L.; Stewart, A.E.

    1988-06-01

    This report covers work conducted by Rockwell International under Amendment 5 to Subcontract STR/DOE-12 of Cooperative Agreement DE-AC-05-80CS40341 between St. Regis Corporation (now Champion International) and the Department of Energy (DOE). The work has been designated Phase 2D of the overall program to differentiate it from prior work under the same subcontract. The overall program is aimed at demonstrating the feasibility of and providing design data for the Rockwell process for gasifying Kraft black liquor. In this process, concentrated black liquor is converted into low-Btu fuel gas and reduced melt by reaction with air in a specially designed gasification reactor.

  3. Quantifying Therapeutic and Diagnostic Efficacy in 2D Microvascular Images

    NASA Technical Reports Server (NTRS)

    Parsons-Wingerter, Patricia; Vickerman, Mary B.; Keith, Patricia A.

    2009-01-01

    VESGEN is a newly automated, user-interactive program that maps and quantifies the effects of vascular therapeutics and regulators on microvascular form and function. VESGEN analyzes two-dimensional, black and white vascular images by measuring important vessel morphology parameters. This software guides the user through each required step of the analysis process via a concise graphical user interface (GUI). Primary applications of the VESGEN code are 2D vascular images acquired as clinical diagnostic images of the human retina and as experimental studies of the effects of vascular regulators and therapeutics on vessel remodeling.

  4. 2-D energy analyzer for low energy electrons

    SciTech Connect

    Karkare, Siddharth Cultrera, Luca; Hwang, Yoon-Woo; Merluzzi, Richard; Bazarov, Ivan

    2015-03-15

    A 2-D electron energy analyzer is designed and constructed to measure the transverse and longitudinal energy distribution of low energy (<1 eV) electrons. The analyzer operates on the principle of adiabatic invariance and motion of low energy electrons in a strong longitudinal magnetic field. The operation of the analyzer is studied in detail and a design to optimize the energy resolution, signal to noise ratio, and physical size is presented. An energy resolution better than 6 meV has been demonstrated. Such an analyzer is a powerful tool to study the process of photoemission which limits the beam quality in modern accelerators.

  5. Parallelization of the 2d Swendsen-Wang Algorithm

    NASA Astrophysics Data System (ADS)

    Hackl, R.; Matuttis, H.-G.; Singer, J. M.; Husslein, Th.; Morgenstern, I.

    We implemented a parallel Swendsen-Wang algorithm for a 2D Ising system without magnetization in a host-node programming model. The simulations were performed on the Intel Hypercube IPSC/860. Our maximum number of updates/s on 32 nodes ist three times as high as in the implementation by Stauffer and Kertsz on the same machine. With 32 processors we reach half the speed of the simulations by Tamayo and Flanigan on 256 nodes of a CM5. We discuss the non-equilibrium relaxation for the energy and the magnetization.

  6. Beam-Plasma Instabilities in a 2D Yukawa Lattice

    SciTech Connect

    Kyrkos, S.; Kalman, G. J.; Rosenberg, M.

    2009-06-05

    We consider a 2D Yukawa lattice of grains, with a beam of other charged grains moving in the lattice plane. In contrast to Vlasov plasmas, where the electrostatic instability excited by the beam is only longitudinal, here both longitudinal and transverse instabilities of the lattice phonons can develop. We determine and compare the transverse and longitudinal growth rates. The growth rate spectrum in wave number space exhibits remarkable gaps where no instability can develop. Depending on the system parameters, the transverse instability can be selectively excited.

  7. Dynamics of Quarks in a 2D Flux Tube

    NASA Astrophysics Data System (ADS)

    Koshelkin, Andrew V.; Wong, Cheuk-Yin

    2015-03-01

    On the basis of a compactification of the (3+1) into (1+1) dimensional space-time [1], the quark states inside the 2D flux tube are studied for the case of a linear transverse confining potential. The derived states are classified by both the projections of the orbital momentum and the spin along the tube direction. The spectrum of the fermion states is evaluated. It is found that the energy eigenvalues of the quarks appear to be approximately related to the square root of the eigenvalues of the two-dimensional harmonic oscillator.

  8. Electromagnetic absorption of semiconductor 2D Majorana nanowires.

    PubMed

    Ruiz, Daniel; Osca, Javier; Serra, Llorenç

    2015-04-01

    We calculate the cross section for the electromagnetic absorption of planar 2D Majorana nanowires. The electromagnetic field is described in the dipole approximation. We discuss the signatures on the cross section of a near-zero-energy mode. A low energy peak for transverse polarization, absent in the longitudinal one, reveals the presence of the Majorana-like state. This peak is relatively robust against the thermal smearing of the level occupations. We consider the influence of optical masks hiding parts of the nanowire from the radiation. PMID:25756993

  9. Algorithms for Warping of 2-D PAGE Maps.

    PubMed

    Manfredi, Marcello; Robotti, Elisa; Marengo, Emilio

    2016-01-01

    Software-based image analysis of 2-D PAGE maps is an important step for the investigation of proteome. Warping algorithms, which are employed to register spots among gels, are able to overcome the difficulties due to the low reproducibility of this analytical technique. Over the years, the research of new matching and warping mathematical methods has allowed the development of several routine applications of easy-to-use software. This chapter describes common and basic spatial transformations used for the alignment of protein spots present in different gel maps; some recently new approaches are also presented. PMID:26611413

  10. Transport Experiments on 2D Correlated Electron Physics in Semiconductors

    SciTech Connect

    Tsui, Daniel

    2014-03-24

    This research project was designed to investigate experimentally the transport properties of the 2D electrons in Si and GaAs, two prototype semiconductors, in several new physical regimes that were previously inaccessible to experiments. The research focused on the strongly correlated electron physics in the dilute density limit, where the electron potential energy to kinetic energy ratio rs>>1, and on the fractional quantum Hall effect related physics in nuclear demagnetization refrigerator temperature range on samples with new levels of purity and controlled random disorder.

  11. Quantum Oscillations in an Interfacial 2D Electron Gas.

    SciTech Connect

    Zhang, Bingop; Lu, Ping; Liu, Henan; Lin, Jiao; Ye, Zhenyu; Jaime, Marcelo; Balakirev, Fedor F.; Yuan, Huiqiu; Wu, Huizhen; Pan, Wei; Zhang, Yong

    2016-01-01

    Recently, it has been predicted that topological crystalline insulators (TCIs) may exist in SnTe and Pb1-xSnxTe thin films [1]. To date, most studies on TCIs were carried out either in bulk crystals or thin films, and no research activity has been explored in heterostructures. We present here the results on electronic transport properties of the 2D electron gas (2DEG) realized at the interfaces of PbTe/ CdTe (111) heterostructures. Evidence of topological state in this interfacial 2DEG was observed.

  12. How to turn your pump–probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping

    PubMed Central

    Shim, Sang-Hee; Zanni, Martin T.

    2010-01-01

    We have recently developed a new and simple way of collecting 2D infrared and visible spectra that utilizes a pulse shaper and a partly collinear beam geometry. 2D IR and Vis spectroscopies are powerful tools for studying molecular structures and their dynamics. They can be used to correlate vibrational or electronic eigenstates, measure energy transfer rates, and quantify the dynamics of lineshapes, for instance, all with femtosecond time-resolution. As a result, they are finding use in systems that exhibit fast dynamics, such as sub-millisecond chemical and biological dynamics, and in hard-to-study environments, such as in membranes. While powerful, these techniques have been difficult to implement because they require a series of femtosecond pulses to be spatially and temporally overlapped with precise time-resolution and interferometric phase stability. However, many of the difficulties associated with implementing 2D spectroscopies are eliminated by using a pulse shaper and a simple beam geometry, which substantially lowers the technical barriers required for researchers to enter this exciting field while simultaneously providing many new capabilities. The aim of this paper is to provide an overview of the methods for collecting 2D spectra so that an outsider considering using 2D spectroscopy in their own research can judge which approach would be most suitable for their research aims. This paper focuses primarily on 2D IR spectroscopy, but also includes our recent work on adapting this technology to collecting 2D Vis spectra. We review work that has already been published as well as cover several topics that we have not reported previously, including phase cycling methods to remove background signals, eliminate unwanted scatter, and shift data collection into the rotating frame. PMID:19290321

  13. 2D Poisson sigma models with gauged vectorial supersymmetry

    NASA Astrophysics Data System (ADS)

    Bonezzi, Roberto; Sundell, Per; Torres-Gomez, Alexander

    2015-08-01

    In this note, we gauge the rigid vectorial supersymmetry of the two-dimensional Poisson sigma model presented in arXiv:1503.05625. We show that the consistency of the construction does not impose any further constraints on the differential Poisson algebra geometry than those required for the ungauged model. We conclude by proposing that the gauged model provides a first-quantized framework for higher spin gravity.

  14. Evaluation of imaging geometry for stationary chest tomosynthesis

    NASA Astrophysics Data System (ADS)

    Shan, Jing; Tucker, Andrew W.; Lee, Yueh Z.; Heath, Michael D.; Wang, Xiaohui; Foos, David; Lu, Jianping; Zhou, Otto

    2014-03-01

    We have recently demonstrated the feasibility of stationary digital chest tomosynthesis (s-DCT) using a dis- tributed carbon nanotube x-ray source array. The technology has the potential to increase the imaging resolution and speed by eliminating source motion. In addition, the flexibility in the spatial configuration of the individual sources allows new tomosynthesis imaging geometries beyond the linear scanning mode used in the conventional systems. In this paper, we report the preliminary results on the effects of the tomosynthesis imaging geometry on the image quality. The study was performed using a bench-top s-DCT system consisting of a CNT x-ray source array and a flat-panel detector. System MTF and ASF are used as quantitative measurement of the in-plane and in-depth resolution. In this study geometries with the x-ray sources arranged in linear, square, rectangular and circular configurations were investigated using comparable imaging doses. Anthropomorphic chest phantom images were acquired and reconstructed for image quality assessment. It is found that wider angular coverage results in better in-depth resolution, while the angular span has little impact on the in-plane resolution in the linear geometry. 2D source array imaging geometry leads to a more isotropic in-plane resolution, and better in-depth resolution compared to 1D linear imaging geometry with comparable angular coverage.

  15. Predicting non-square 2D dice probabilities

    NASA Astrophysics Data System (ADS)

    Pender, G. A. T.; Uhrin, M.

    2014-07-01

    The prediction of the final state probabilities of a general cuboid randomly thrown onto a surface is a problem that naturally arises in the minds of men and women familiar with regular cubic dice and the basic concepts of probability. Indeed, it was considered by Newton in 1664 (Newton 1967 The Mathematical Papers of Issac Newton vol I (Cambridge: Cambridge University Press) pp 60-1). In this paper we make progress on the 2D problem (which can be realized in 3D by considering a long cuboid, or alternatively a rectangular cross-sectioned dreidel). For the two-dimensional case we suggest that the ratio of the probabilities of landing on each of the two sides is given by \\frac{\\sqrt{{{k}^{2}}+{{l}^{2}}}-k}{\\sqrt{{{k}^{2}}+{{l}^{2}}}-l}\\frac{arctan \\frac{l}{k}}{arctan \\frac{k}{l}} where k and l are the lengths of the two sides. We test this theory both experimentally and computationally, and find good agreement between our theory, experimental and computational results. Our theory is known, from its derivation, to be an approximation for particularly bouncy or ‘grippy’ surfaces where the die rolls through many revolutions before settling. On real surfaces we would expect (and we observe) that the true probability ratio for a 2D die is a somewhat closer to unity than predicted by our theory. This problem may also have wider relevance in the testing of physics engines.

  16. Ramsey Spectroscopy Using a Tilted 2D MOT

    NASA Astrophysics Data System (ADS)

    Knutson, Erin; Simha, Raghav; Kwolek, Jonathan M.; Narducci, Frank A.

    2015-05-01

    We study Ramsey spectroscopy using a 2D tilted MOT. We use a tilted two-dimensional magneto-optical trap (2D MOT) to form a cold and continuous beam of Rubidium 85 atoms. The beam emerges from a pinhole where it passes through an on-resonance state preparation laser beam and then through a pair of co-propagating laser beams tuned to drive stimulated Raman transitions in the atoms. Finally, the beam passes through an on-resonance readout beam. We show that, by controlling the intensity of the Raman beams, we can make the product of the Rabi frequency and the transit time of the atoms through the laser beam equal to ? or ? / 2 as desired. We find a multi-peak Raman spectrum. We compare the width of the clock transition to the reciprocal of the atoms' transit time through the Raman fields. Finally, we study Ramsey spectroscopy using our system. Supported by a NavAir Section 219 grant.

  17. Mass loss in 2D rotating stellar models

    SciTech Connect

    Lovekin, Caterine; Deupree, Bob

    2010-10-05

    Radiatively driven mass loss is an important factor in the evolution of massive stars . The mass loss rates depend on a number of stellar parameters, including the effective temperature and luminosity. Massive stars are also often rapidly rotating, which affects their structure and evolution. In sufficiently rapidly rotating stars, both the effective temperature and radius vary significantly as a function of latitude, and hence mass loss rates can vary appreciably between the poles and the equator. In this work, we discuss the addition of mass loss to a 2D stellar evolution code (ROTORC) and compare evolution sequences with and without mass loss. Preliminary results indicate that a full 2D calculation of mass loss using the local effective temperature and luminosity can significantly affect the distribution of mass loss in rotating main sequence stars. More mass is lost from the pole than predicted by 1D models, while less mass is lost at the equator. This change in the distribution of mass loss will affect the angular momentum loss, the surface temperature and luminosity, and even the interior structure of the star. After a single mass loss event, these effects are small, but can be expected to accumulate over the course of the main sequence evolution.

  18. Spectroscopic properties of multilayered gold nanoparticle 2D sheets.

    PubMed

    Yoshida, Akihito; Imazu, Keisuke; Li, Xinheng; Okamoto, Koichi; Tamada, Kaoru

    2012-12-11

    We report the fabrication technique and optical properties of multilayered two-dimensional (2D) gold nanoparticle sheets ("Au nanosheet"). The 2D crystalline monolayer sheet composed of Au nanoparticles shows an absorption peak originating from a localized surface plasmon resonance (LSPR). It was found that the absorption spectra dramatically change when the monolayers are assembled into the multilayers on different substrates (quartz or Au). In the case of the multilayers on Au thin film (d = 200 nm), the LSPR peak is shifted to longer wavelength at the near-IR region by increasing the number of layers. The absorbance also depends on the layer number and shows the nonlinear behavior. On the other hand, the multilayers on quartz substrate show neither such LSPR peak shift nor nonlinear response of absorbance. The layer number dependence on metal surfaces can be interpreted as the combined effects between the near-field coupling of the LSPR and the far-field optics of the stratified metamaterial films, as proposed in our previous study. We also report the spectroscopic properties of hybrid multilayers composed of two kinds of monolayers, i.e., Au nanosheet and Ag nanosheet. The combination of the different metal nanoparticle sheets realizes more flexible plasmonic color tuning. PMID:23153010

  19. New Approach for 2D Readout of GEM Detectors

    SciTech Connect

    Hasell, Douglas K

    2011-10-29

    Detectors based on Gas Electron Multiplication (GEM) technology are becoming more and more widely used in nuclear and high energy physics and are being applied in astronomy, medical physics, industry, and homeland security. GEM detectors are thin, low mass, insensitive to magnetic fields, and can currently provide position resolutions down to {approx}50 microns. However, the designs for reconstructing the position, in two dimensions (2D), of the charged particles striking a GEM detector are often complicated to fabricate and expensive. The objective of this proposal is to investigate a simpler procedure for producing the two dimensional readout layer of GEM detectors using readily available printed circuit board technology which can be tailored to the detector requirements. We will use the established GEM laboratory and facilities at M.I.T. currently employed in developing GEM detectors for the STAR forward tracking upgrade to simplify the testing and evaluation of the new 2D readout designs. If this new design proves successful it will benefit future nuclear and high energy physics experiments already being planned and will similarly extend and simplify the application of GEM technology to other branches of science, medicine, and industry. These benefits would be not only in lower costs for fabrication but also it increased flexibility for design and application.

  20. Beam-Plasma Interaction in a 2D Complex Plasma

    NASA Astrophysics Data System (ADS)

    Kyrkos, Stamatios; Kalman, G. J.; Rosenberg, M.

    2006-10-01

    In a complex (dusty) plasma, penetrating ion or electron beams may lead to beam-plasma instabilities. The instability displays interesting new properties when either the plasma or the beam, or both, are strongly interacting^1. Foremost amongst them is the possible generation of transverse instabilities. We consider the case when a 2D plasma is in the crystalline phase, forming a lattice, and the beam is moving in the lattice plane. Both the grains and the beam particles interact through a realistic Yukawa potential. The beam particles are assumed to be weakly coupled to each other and to the lattice^2. Using the full phonon spectrum for a 2D hexagonal Yukawa lattice^3, we determine and compare the transverse and longitudinal growth rates. The behavior of the growth rates depends on the direction of the beam and on the relationship between the beam speed v and the longitudinal and transverse sound speeds sL, sT. For beam speeds between the longitudinal and transverse sound speeds, the transverse instability could be more important, because it appears at lower k values. ^1 G. J. Kalman and M. Rosenberg, J. Phys. A: Math. Gen. 36 5963 (2003) ^2 M. Rosenberg, G. J. Kalman, S. Kyrkos and Z. Donko, J. Phys. A: Math. Gen. 39 4613 (2006) ^3 T. Sullivan, G. J. Kalman, S. Kyrkos, P. Bakshi, M. Rosenberg and Z. Donko, J. Phys. A: Math. Gen. 39 4607 (2006)

  1. Preconditioning 2D Integer Data for Fast Convex Hull Computations

    PubMed Central

    2016-01-01

    In order to accelerate computing the convex hull on a set of n points, a heuristic procedure is often applied to reduce the number of points to a set of s points, s ≤ n, which also contains the same hull. We present an algorithm to precondition 2D data with integer coordinates bounded by a box of size p × q before building a 2D convex hull, with three distinct advantages. First, we prove that under the condition min(p, q) ≤ n the algorithm executes in time within O(n); second, no explicit sorting of data is required; and third, the reduced set of s points forms a simple polygonal chain and thus can be directly pipelined into an O(n) time convex hull algorithm. This paper empirically evaluates and quantifies the speed up gained by preconditioning a set of points by a method based on the proposed algorithm before using common convex hull algorithms to build the final hull. A speedup factor of at least four is consistently found from experiments on various datasets when the condition min(p, q) ≤ n holds; the smaller the ratio min(p, q)/n is in the dataset, the greater the speedup factor achieved. PMID:26938221

  2. Decompaction, fluidisation and segregation in a 2D sandpile

    NASA Astrophysics Data System (ADS)

    Duran, J.; Mazozi, T.; Rajchenbach, J.; Clment, E.

    Depending on the micromechanical properties of its components and submitted to a vibrational excitation, a 2D set of spherical particles can exhibit the whole range of behaviour of common dry particulates such as sand : Spontaneous heaping, size segregation , convection, surface fluidisation etc. Modelling sand with a 2D set of particles has the crucial advantage of allowing a direct observation of the interplay of these processes, as well as allowing theoretical investigation and making up privileged benchmarks for computer simulations. Based on our most recent experiments, this paper is devoted to the recognition of the pertinent parameters which govern the physics of these materials. As an example, we discuss the processes governing vibrational size segregation and we set-up and illustrate the basic equations which rule the progressive decompaction mechanism responsible for bulk motions. In particular we show how the interplay of both the friction at the boundaries, the aspect ratio of the container and the ability of the granulate to convert vertical into horizontal stresses, combine into a single a-dimensional parameter ?, which governs the decompaction process.

  3. Terahertz Photoresistance in Laterally Modulated 2D Electron Layers

    NASA Astrophysics Data System (ADS)

    Aizin, Gregory; Mourokh, Lev

    2005-03-01

    We study theoretically changes in the resistance of laterally modulated 2D electron layer induced by a terahertz electromagnetic (EM) wave at normal incidence. Electron density modulation is provided by the metal grating gate. Periodic modulation results in the coupling of an external EM wave with plasmon excitations in the layer. Corrections to the dc resistivity of 2D electron layer induced by the terahertz irradiation are found from the solution of classical kinetic equation in the lowest order on the EM wave intensity. We demonstrate that photoresistivity as a function of the frequency of EM wave has resonances at plasmon frequencies and analyze dependence of the height and position of the resonant peak on the electron density and modulation factor. It is shown that the peak height has non-monotonous dependence on the modulation factor, with the latter being determined by the gate voltage and the temperature. The implications of our results for explanation of recent experiments (X.G. Peralta et al, Appl. Phys. Lett., 81, 1627 (2002)) are discussed. .

  4. Controlling cell growth with tailorable 2D nanoholes arrays.

    PubMed

    Fragal, Vanessa H; Cellet, Thelma Sley P; Fragal, Elizângela H; Pereira, Guilherme M; Garcia, Francielle P; Nakamura, Celso V; Asefa, Tewodros; Rubira, Adley F; Silva, Rafael

    2016-03-15

    A facile and reproducible route that can lead to two-dimensional arrays of nanopores in thin polymer films is demonstrated. The formation of the pores in the polymer films involves breath figure phenomenon and occurs during the film deposition by spin coating. The formation of nanoporous thin films takes only few seconds, and the method does not require complex equipment or expensive chemicals. This method also constitutes a straightforward approach to control the size of the pores formed in thin films. Besides allowing control over the average pore size of the porous films, the use of dynamic deposition with the breath figure phenomenon causes the reduction in the pore size to nanometer scale. The nanoporous arrays obtained by the breath figure are applied as substrates for cell growth, and the effect of their nanopore size on cell growth was evaluated. Notably, it is found that cell viability is related to pore size, where 2D nanoporous structure is more beneficial for cell culture than 2D microporous structures. The change in the average pore size of the polymer films from 1.22μm to 346nm results in a threefold increase in cell viability. PMID:26722796

  5. MESH2D GRID GENERATOR DESIGN AND USE

    SciTech Connect

    Flach, G.; Smith, F.

    2012-01-20

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j{sub 0}) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assigns an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations. The overall mesh is constructed from grid zones that are typically then subdivided into a collection of smaller grid cells. The grid zones usually correspond to distinct materials or larger-scale geometric shapes. The structured grid zones are identified through uppercase indices (I,J). Subdivision of zonal regions into grid cells can be done uniformly, or nonuniformly using either a polynomial or geometric skewing algorithm. Grid cells may be concentrated backward, forward, or toward both ends. Figure 1 illustrates the above concepts in the context of a simple four zone grid.

  6. MAZE. Generates 2D Input for DYNA, NIKE & TOPAZ

    SciTech Connect

    Hallquist, J.O.

    1992-02-12

    MAZE is an interactive input generator for two-dimensional finite element codes. MAZE has three phases. In the first phase, lines and parts are defined. The first phase is terminated by the `ASSM` or `PASSM` command which merges all parts. In the second phase, boundary conditions may be specified, slidelines may be defined, parts may be merged to eliminate nodes along common interfaces, boundary nodes may be moved for graded zoning, the mesh may be smoothed, and load curves may be defined. The second phase is terminated by the `WBCD` command which causes MAZE to write the output file as soon as the `T` terminate command is typed. In the third phase, material properties may be defined. Commands that apply to the first phase may not be used in the second or third; likewise, commands that apply in the second may not be used in the first and third, or commands that apply in the third in the first and second. Nine commands - TV, Z, GSET, PLOTS, GRID, NOGRID, FRAME, NOFRAME, and RJET are available in all phases. Comments may be added anywhere in the input stream by prefacing the comment with `C`. Any DYNA2D or NIKE2D material and equation-of-state model may be defined via the MAT and EOS commands, respectively. MAZE may be terminated after phase two; it is not necessary to define the materials.

  7. MAZE. Generates 2D Input for DYNA NIKE & TOPAZ

    SciTech Connect

    Hallquist, J.O.

    1992-02-24

    MAZE is an interactive input generator for two-dimensional finite element codes. MAZE has three phases. In the first phase, lines and parts are defined. The first phase is terminated by the `ASSM` or `PASSM` command which merges all parts. In the second phase, boundary conditions may be specified, slidelines may be defined, parts may be merged to eliminate nodes along common interfaces, boundary nodes may be moved for graded zoning, the mesh may be smoothed, and load curves may be defined. The second phase is terminated by the `WBCD` command which causes MAZE to write the output file as soon as the `T` terminate command is typed. In the third phase, material properties may be defined. Commands that apply to the first phase may not be used in the second or third; likewise, commands that apply in the second may not be used in the first and third, or commands that apply in the third in the first and second. Nine commands - TV, Z, GSET, PLOTS, GRID, NOGRID, FRAME, NOFRAME, and RJET are available in all phases. Comments may be added anywhere in the input stream by prefacing the comment with `C`. Any DYNA2D or NIKE2D material and equation-of-state model may be defined via the MAT and EOS commands, respectively. MAZE may be terminated after phase two; it is not necessary to define the materials.

  8. MAZE. Generates 2D Input for DYNA NIKE & TOPAZ

    SciTech Connect

    Hallquist, J.O.

    1992-02-10

    MAZE is an interactive input generator for two-dimensional finite element codes. MAZE has three phases. In the first phase, lines and parts are defined. The first phase is terminated by the `ASSM` or `PASSM` command which merges all parts. In the second phase, boundary conditions may be specified, slidelines may be defined, parts may be merged to eliminate nodes along common interfaces, boundary nodes may be moved for graded zoning, the mesh may be smoothed, and load curves may be defined. The second phase is terminated by the `WBCD` command which causes MAZE to write the output file as soon as the `T` terminate command is typed. In the third phase, material properties may be defined. Commands that apply to the first phase may not be used in the second or third; likewise, commands that apply in the second may not be used in the first and third, or commands that apply in the third in the first and second. Nine commands - TV, Z, GSET, PLOTS, GRID, NOGRID, FRAME, NOFRAME, and RJET are available in all phases. Comments may be added anywhere in the input stream by prefacing the comment with `C`. Any DYNA2D or NIKE2D material and equation-of-state model may be defined via the MAT and EOS commands, respectively. MAZE may be terminated after phase two; it is not necessary to define the materials.

  9. MAZE. Generates 2D Input for DYNA, NIKE, & TOPAZ

    SciTech Connect

    Hallquist, J.O.

    1992-02-10

    MAZE is an interactive input generator for two-dimensional finite element codes. MAZE has three phases. In the first phase, lines and parts are defined. The first phase is terminated by the `ASSM` or `PASSM` command which merges all parts. In the second phase, boundary conditions may be specified, slidelines may be defined, parts may be merged to eliminate nodes along common interfaces, boundary nodes may be moved for graded zoning, the mesh may be smoothed, and load curves may be defined. The second phase is terminated by the `WBCD` command which causes MAZE to write the output file as soon as the `T` terminate command is typed. In the third phase, material properties may be defined. Commands that apply to the first phase may not be used in the second or third; likewise, commands that apply in the second may not be used in the first and third, or commands that apply in the third in the first and second. Nine commands - TV, Z, GSET, PLOTS, GRID, NOGRID, FRAME, NOFRAME, and RJET are available in all phases. Comments may be added anywhere in the input stream by prefacing the comment with `C`. Any DYNA2D or NIKE2D material and equation-of-state model may be defined via the MAT and EOS commands, respectively. MAZE may be terminated after phase two; it is not necessary to define the materials.

  10. 2D Quantum Transport Modeling in Nanoscale MOSFETs

    NASA Technical Reports Server (NTRS)

    Svizhenko, Alexei; Anantram, M. P.; Govindan, T. R.; Biegel, B.

    2001-01-01

    We have developed physical approximations and computer code capable of realistically simulating 2-D nanoscale transistors, using the non-equilibrium Green's function (NEGF) method. This is the most accurate full quantum model yet applied to 2-D device simulation. Open boundary conditions, oxide tunneling and phase-breaking scattering are treated on an equal footing. Electron bandstructure is treated within the anisotropic effective mass approximation. We present the results of our simulations of MIT 25 and 90 nm "well-tempered" MOSFETs and compare them to those of classical and quantum corrected models. The important feature of quantum model is smaller slope of Id-Vg curve and consequently higher threshold voltage. These results are consistent with 1D Schroedinger-Poisson calculations. The effect of gate length on gate-oxide leakage and subthreshold current has been studied. The shorter gate length device has an order of magnitude smaller leakage current than the longer gate length device without a significant trade-off in on-current.

  11. Quantization of hopping transport in dilute 2D electron systems

    NASA Astrophysics Data System (ADS)

    Ghosh, Arindam; Pepper, Michael; Beere, Harvey; Ritchie, David

    2003-03-01

    We report the results of experimental investigations on the hopping transport in low electron-density 2D electron systems at zero magnetic field. In disordered systems, variable-range hopping (VRH) of the localized electrons dominates the nearest-neighbor hopping process at very low temperatures. In the VRH mechanism, the dc conductance G(T) of the system is expressed as, G(T) = G_0exp[-(T_0/T)^p], where T is the temperature and T0 is the correlation energy scale. In conventional phonon-assisted single-particle hopping, the pre-exponential G0 depends on electron-phonon coupling, and hence strongly material-dependent. Contrary to the theoretical expectation, we find G0 in our systems to be universal, and as a function of the electron density (n), assumes values at integral submultiples of e^2/h when the hopping exponent p 1/2, as in Efros-Sklovskii-type VRH with a Coulomb gap. At higher values of n, where p 1/3 (Mott-type VRH), G0 assumes submultiples of 2e^2/h. The 2D electron systems are created in high-quality GaAs/Al_xGa_1-xAs heterostructures, where background disorder can be accurately controlled. Within a limited parameter range, this quantization of G0 was found to be independent of geometrical and structural properties of the samples, implying a process driven by strong electron-electron interactions.

  12. Dynamic sector processing using 2D assignment for rotating radars

    NASA Astrophysics Data System (ADS)

    Habtemariam, Biruk K.; Tharmarasa, R.; Pelletier, M.; Kirubarajan, T.

    2011-09-01

    Electronically scanned array radars as well as mechanically steered rotating antennas return measurements with different time stamps during the same scan while sweeping form one region to another. Data association algorithms process the measurements at the end of the scan in order to satisfy the common one measurement per track assumption. Data processing at the end of a full scan resulted in delayed target state update. This issue becomes more apparent while tracking fast moving targets with low scan rate sensors. In this paper, we present new dynamic sector processing algorithm using 2D assignment for continuously scanning radars. A complete scan can be divided into sectors, which could be as small as a single detection, depending on the scanning rate and sparsity of targets. Data association followed by filtering and target state update is done dynamically while sweeping from one end to another. Along with the benefit of immediate track updates, continuous tracking results in challenges such as multiple targets spanning multiple sectors and targets crossing consecutive sectors. Also, associations performed in the current sector may require changes in association done in previous sectors. Such difficulties are resolved by the proposed 2D assignment algorithm that implements an incremental Hungarian assignment technique. The algorithm offers flexibility with respect to assignment variables for fusing of measurements received in consecutive sectors. Furthermore the proposed technique can be extended to multiframe assignment for jointly processing data from multiple scanning radars. Experimental results based on rotating radars are presented.

  13. 2D Gridded Surface Data Value-Added Product

    SciTech Connect

    Tang, Q; Xie, S

    2015-08-30

    This report describes the Atmospheric Radiation Measurement (ARM) Best Estimate (ARMBE) 2-dimensional (2D) gridded surface data (ARMBE2DGRID) value-added product. Spatial variability is critically important to many scientific studies, especially those that involve processes of great spatial variations at high temporal frequency (e.g., precipitation, clouds, radiation, etc.). High-density ARM sites deployed at the Southern Great Plains (SGP) allow us to observe the spatial patterns of variables of scientific interests. The upcoming megasite at SGP with its enhanced spatial density will facilitate the studies at even finer scales. Currently, however, data are reported only at individual site locations at different time resolutions for different datastreams. It is difficult for users to locate all the data they need and requires extra effort to synchronize the data. To address these problems, the ARMBE2DGRID value-added product merges key surface measurements at the ARM SGP sites and interpolates the data to a regular 2D grid to facilitate the data application.

  14. PBG properties of three-component 2D photonic crystals

    NASA Astrophysics Data System (ADS)

    Glushko, Alexander; Karachevtseva, Lyudmila

    2006-08-01

    In this paper we analyze theoretically how the introduction of the third component into the two-dimensional photonic crystal influences the photonic band structure and the density-of-states of the system. We consider the periodic array of cylindrical air rods in a dielectric, and the third medium is introduced as a ring-shaped intermediate layer of thickness d and dielectric constant ɛi between the air pores and the dielectric background. Using the plane wave method, we have obtained the band structures for the 2D triangular lattice photonic crystals. The dependencies of TE and TM band gaps’ widths and gaps’ edges position on the interlayer dielectric constant and interlayer thickness were analyzed. In the framework of this approach, we have estimated the influence of the surface oxide layer on the band structure of macroporous silicon. We observed the shift of the gaps’ edges to the higher or lower frequencies, depending on the interlayer thickness and dielectric constant. We have shown that the existence of a native oxide surface layer should be taken into consideration to understand the optical properties of 2D photonic crystals, particularly in macroporous silicon structures.

  15. Local currents in a 2D topological insulator.

    PubMed

    Dang, Xiaoqian; Burton, J D; Tsymbal, Evgeny Y

    2015-12-23

    Symmetry protected edge states in 2D topological insulators are interesting both from the fundamental point of view as well as from the point of view of potential applications in nanoelectronics as perfectly conducting 1D channels and functional elements of circuits. Here using a simple tight-binding model and the Landauer-Bttiker formalism we explore local current distributions in a 2D topological insulator focusing on effects of non-magnetic impurities and vacancies as well as finite size effects. For an isolated edge state, we show that the local conductance decays into the bulk in an oscillatory fashion as explained by the complex band structure of the bulk topological insulator. We demonstrate that although the net conductance of the edge state is topologically protected, impurity scattering leads to intricate local current patterns. In the case of vacancies we observe vortex currents of certain chirality, originating from the scattering of current-carrying electrons into states localized at the edges of hollow regions. For finite size strips of a topological insulator we predict the formation of an oscillatory band gap in the spectrum of the edge states, the emergence of Friedel oscillations caused by an open channel for backscattering from an impurity and antiresonances in conductance when the Fermi energy matches the energy of the localized state created by an impurity. PMID:26610145

  16. Flatbands in 2D boroxine-linked covalent organic frameworks.

    PubMed

    Wang, Rui-Ning; Zhang, Xin-Ran; Wang, Shu-Fang; Fu, Guang-Sheng; Wang, Jiang-Long

    2015-12-23

    Density functional calculations have been performed to analyze the electronic and mechanical properties of a number of 2D boroxine-linked covalent organic frameworks (COFs), which are experimentally fabricated from di-borate aromatic molecules. Furthermore, the band structures are surprising and show flat-band characteristics which are mainly attributed to the delocalized ?-conjugated electrons around the phenyl rings and can be better understood within aromaticity theories. Next, the effects of branch sizes and hydrostatic strains on their band structures are systematically considered within generalized gradient approximations. It is found that their band gaps will start to saturate when the branch size reaches 9. For boroxine-linked COFs with only one benzene ring in the branch, the band gap is robust under compressive strain while it decreases with the tensile strain increasing. When the branch size is equal or greater than 2, their band gaps will monotonously increase with the strain increasing in the range of [-1.0, 2.0] . All boroxine-linked COFs are semiconductors with controllable band gaps, depending on the branch length and the applied strain. In comparison with other 2D materials, such as graphene, hexagonal boron nitride, and even ?-graphyne, all boroxine-linked COFs are much softer and even more stable. That is, they can maintain the planar features under a larger compressive strain, which means that they are good candidates in flexible electronics. PMID:26662215

  17. 3D surface configuration modulates 2D symmetry detection.

    PubMed

    Chen, Chien-Chung; Sio, Lok-Teng

    2015-02-01

    We investigated whether three-dimensional (3D) information in a scene can affect symmetry detection. The stimuli were random dot patterns with 15% dot density. We measured the coherence threshold, or the proportion of dots that were the mirror reflection of the other dots in the other half of the image about a central vertical axis, at 75% accuracy with a 2AFC paradigm under various 3D configurations produced by the disparity between the left and right eye images. The results showed that symmetry detection was difficult when the corresponding dots across the symmetry axis were on different frontoparallel or inclined planes. However, this effect was not due to a difference in distance, as the observers could detect symmetry on a slanted surface, where the depth of the two sides of the symmetric axis was different. The threshold was reduced for a hinge configuration where the join of two slanted surfaces coincided with the axis of symmetry. Our result suggests that the detection of two-dimensional (2D) symmetry patterns is subject to the 3D configuration of the scene; and that coplanarity across the symmetry axis and consistency between the 2D pattern and 3D structure are important factors for symmetry detection. PMID:25536469

  18. Interactive 2D to 3D stereoscopic image synthesis

    NASA Astrophysics Data System (ADS)

    Feldman, Mark H.; Lipton, Lenny

    2005-03-01

    Advances in stereoscopic display technologies, graphic card devices, and digital imaging algorithms have opened up new possibilities in synthesizing stereoscopic images. The power of today"s DirectX/OpenGL optimized graphics cards together with adapting new and creative imaging tools found in software products such as Adobe Photoshop, provide a powerful environment for converting planar drawings and photographs into stereoscopic images. The basis for such a creative process is the focus of this paper. This article presents a novel technique, which uses advanced imaging features and custom Windows-based software that utilizes the Direct X 9 API to provide the user with an interactive stereo image synthesizer. By creating an accurate and interactive world scene with moveable and flexible depth map altered textured surfaces, perspective stereoscopic cameras with both visible frustums and zero parallax planes, a user can precisely model a virtual three-dimensional representation of a real-world scene. Current versions of Adobe Photoshop provide a creative user with a rich assortment of tools needed to highlight elements of a 2D image, simulate hidden areas, and creatively shape them for a 3D scene representation. The technique described has been implemented as a Photoshop plug-in and thus allows for a seamless transition of these 2D image elements into 3D surfaces, which are subsequently rendered to create stereoscopic views.

  19. The unitary conformal field theory behind 2D Asymptotic Safety

    NASA Astrophysics Data System (ADS)

    Nink, Andreas; Reuter, Martin

    2016-02-01

    Being interested in the compatibility of Asymptotic Safety with Hilbert space positivity (unitarity), we consider a local truncation of the functional RG flow which describes quantum gravity in d > 2 dimensions and construct its limit of exactly two dimensions. We find that in this limit the flow displays a nontrivial fixed point whose effective average action is a non-local functional of the metric. Its pure gravity sector is shown to correspond to a unitary conformal field theory with positive central charge c = 25. Representing the fixed point CFT by a Liouville theory in the conformal gauge, we investigate its general properties and their implications for the Asymptotic Safety program. In particular, we discuss its field parametrization dependence and argue that there might exist more than one universality class of metric gravity theories in two dimensions. Furthermore, studying the gravitational dressing in 2D asymptotically safe gravity coupled to conformal matter we uncover a mechanism which leads to a complete quenching of the a priori expected Knizhnik-Polyakov-Zamolodchikov (KPZ) scaling. A possible connection of this prediction to Monte Carlo results obtained in the discrete approach to 2D quantum gravity based upon causal dynamical triangulations is mentioned. Similarities of the fixed point theory to, and differences from, non-critical string theory are also described. On the technical side, we provide a detailed analysis of an intriguing connection between the Einstein-Hilbert action in d > 2 dimensions and Polyakov's induced gravity action in two dimensions.

  20. Hamiltonian Operators of Dubrovin-Novikov Type in 2D

    NASA Astrophysics Data System (ADS)

    Ferapontov, Evgeny V.; Lorenzoni, Paolo; Savoldi, Andrea

    2015-03-01

    First order Hamiltonian operators of differential-geometric type were introduced by Dubrovin and Novikov in 1983, and thoroughly investigated by Mokhov. In 2D, they are generated by a pair of compatible flat metrics and which satisfy a set of additional constraints coming from the skew-symmetry condition and the Jacobi identity. We demonstrate that these constraints are equivalent to the requirement that is a linear Killing tensor of g with zero Nijenhuis torsion. This allowed us to obtain a complete classification of n-component operators with n ? 4 (for n = 1, 2 this was done before). For 2D operators the Darboux theorem does not hold: the operator may not be reducible to constant coefficient form. All interesting (non-constant) examples correspond to the case when the flat pencil is not semisimple, that is, the affinor has non-trivial Jordan block structure. In the case of a direct sum of Jordan blocks with distinct eigenvalues, we obtain a complete classification of Hamiltonian operators for any number of components n, revealing a remarkable correspondence with the class of trivial Frobenius manifolds modelled on H *( CP n-1).

  1. Local currents in a 2D topological insulator

    NASA Astrophysics Data System (ADS)

    Dang, Xiaoqian; Burton, J. D.; Tsymbal, Evgeny Y.

    2015-12-01

    Symmetry protected edge states in 2D topological insulators are interesting both from the fundamental point of view as well as from the point of view of potential applications in nanoelectronics as perfectly conducting 1D channels and functional elements of circuits. Here using a simple tight-binding model and the Landauer-Bttiker formalism we explore local current distributions in a 2D topological insulator focusing on effects of non-magnetic impurities and vacancies as well as finite size effects. For an isolated edge state, we show that the local conductance decays into the bulk in an oscillatory fashion as explained by the complex band structure of the bulk topological insulator. We demonstrate that although the net conductance of the edge state is topologically protected, impurity scattering leads to intricate local current patterns. In the case of vacancies we observe vortex currents of certain chirality, originating from the scattering of current-carrying electrons into states localized at the edges of hollow regions. For finite size strips of a topological insulator we predict the formation of an oscillatory band gap in the spectrum of the edge states, the emergence of Friedel oscillations caused by an open channel for backscattering from an impurity and antiresonances in conductance when the Fermi energy matches the energy of the localized state created by an impurity.

  2. 2D Resistivity in Discontinuous Permafrost, Fort Wainwright, Alaska

    NASA Astrophysics Data System (ADS)

    Astley, B. N.; Snyder, C. F.; Sturtevant, K.

    2004-12-01

    2D resistivity profiles were collected in an area containing discontinuous permafrost, fractured bedrock, and groundwater contamination on Fort Wainwright, Alaska in June 2004. The stratigraphy consists of the Chena Alluvium over weathered and fractured Birch Hill Schist. Contaminant migration pathways are complex due to numerous fractures and frozen zones. Our purpose was to supplement existing permafrost data and to identify other features that might influence ground water flow and contaminant transport. This study used an Iris Instruments Syscal Pro-ten, 10-channel switch resistivity meter and a 96-electrode cable with 5-meter electrode spacing. Three resistivity array configurations were used during this study: dipole-dipole, Wenner and Schlumberger. Resistivity models were generated with RES2DINV software and were compared along identical profiles for the three array types. Modeled resistivity values of over 2000 ohm-m were interpreted as permafrost in most cases based on previous resistivity studies at the site. Borehole logs and known frozen zones from monitoring wells were used to verify the permafrost interpretations. Dynamic Graphics software EarthVision was used to generate a 3-D permafrost model of the area. This model was updated at the completion of the 2D resistivity survey.

  3. The agreement between 3D, standard 2D and triplane 2D speckle tracking: effects of image quality and 3D volume rate

    PubMed Central

    Stbe, Stephan; Tarr, Adrienn; Pfeiffer, Dietrich; Hagendorff, Andreas

    2014-01-01

    Comparison of 3D and 2D speckle tracking performed on standard 2D and triplane 2D datasets of normal and pathological left ventricular (LV) wall-motion patterns with a focus on the effect that 3D volume rate (3DVR), image quality and tracking artifacts have on the agreement between 2D and 3D speckle tracking. 37 patients with normal LV function and 18 patients with ischaemic wall-motion abnormalities underwent 2D and 3D echocardiography, followed by offline speckle tracking measurements. The values of 3D global, regional and segmental strain were compared with the standard 2D and triplane 2D strain values. Correlation analysis with the LV ejection fraction (LVEF) was also performed. The 3D and 2D global strain values correlated good in both normally and abnormally contracting hearts, though systematic differences between the two methods were observed. Of the 3D strain parameters, the area strain showed the best correlation with the LVEF. The numerical agreement of 3D and 2D analyses varied significantly with the volume rate and image quality of the 3D datasets. The highest correlation between 2D and 3D peak systolic strain values was found between 3D area and standard 2D longitudinal strain. Regional wall-motion abnormalities were similarly detected by 2D and 3D speckle tracking. 2DST of triplane datasets showed similar results to those of conventional 2D datasets. 2D and 3D speckle tracking similarly detect normal and pathological wall-motion patterns. Limited image quality has a significant impact on the agreement between 3D and 2D numerical strain values. PMID:26693303

  4. Advanced geometries and regimes

    NASA Astrophysics Data System (ADS)

    Bulanov, S. S.; Bulanov, S. V.; Turchetti, G.; Limpouch, J.; Klimo, O.; Psikal, J.; Stockem, A.; Fiuza, F.; Silva, L. O.; Antici, P.; Margarone, D.; Korn, G.

    2013-08-01

    We review and discuss different schemes of laser ion acceleration as well as advanced target geometries in connection with the development of the laser-driven proton source for hadron therapy of oncological diseases, which is a part of the ELIMED project. At the request of the Proceedings Editors and Dr. Stepan Bulanov, University of California, Berkeley, the above article has been updated to include three additional authors: A. Stockem, F. Fiuza, and L. O. Silva. All additional authors have consented to their name being added to the paper. Furthermore, the updated article PDF contains amendments to a number of references as detailed within the pages attached to the end of the updated article PDF file. The updated article was re-published on 8 August 2013.

  5. Quantum computational geometry

    NASA Astrophysics Data System (ADS)

    Lanzagorta, Marco; Uhlmann, Jeffrey K.

    2004-08-01

    The prospects for practical quantum computing have improved significantly over the past few years, and there is an increasing motivation for developing quantum algorithms to address problems that are presently impractical to solve using classical computing. In previous work we have indentified such problems in the areas of computer graphics applications, and we have derived quantum-based solutions. In this paper we examine quantum-based solutions to problems arising in the area of computational geometry. These types of problems are important in a variety of scientific, industrial and military applications such as large scale multi-object simulation, virtual reality systems, and multi-target tracking. In particular, we present quantum algorithms for multidimensional searches, convex hull construction, and collision detection.

  6. Stochastic geometry of turbulence

    NASA Astrophysics Data System (ADS)

    Falkovich, Gregory

    2012-02-01

    Geometric statistics open the window into the most fundamental aspect of turbulence flows, their symmetries, both broken and emerging. On one hand, the study of the stochastic geometry of multi-point configurations reveals the statistical conservation laws which are responsible for the breakdown of scale invariance in direct turbulence cascades. On the other hand, the numerical and experimental studies of inverse cascade reveal that some families of isolines can be mapped to a Brownian walk (i.e. belong to the so-called SLE class) and are thus not only scale invariant but conformally invariant. That means that some aspects of turbulence statistics can be probably described by a conformal field theory. The talk is a review of broken and emerging symmetries in turbulence statistics.

  7. Linear geometry thyratron

    NASA Astrophysics Data System (ADS)

    Byron, S.

    1985-03-01

    The low pressure gas-filled thyratron is scalable in the long dimension. Internally the tube is formed as a tetrode, with an auxiliary grid placed between the cathode and the control grid. A dc or pulsed power source drives the auxiliary grid both to insure uniform cathode emission and to provide a grid-cathode plasma prior to commutation. The high voltage holdoff structure consists of the anode, the control grid and its electrostatic shielding baffles, and a main quartz insulator. A small gas flow supply and exhaust system is used that eliminates the need for a hydrogen reservoir and permits other gases, such as helium, to be used. The thyratron provides a low inductance, high current, long lifetime switch configuration: useful for switch-on applications involving large scale lasers and other similar loads that are distributed in a linear geometry.

  8. Critique of information geometry

    SciTech Connect

    Skilling, John

    2014-12-05

    As applied to probability, information geometry fails because probability distributions do not form a metric space. Probability theory rests on a compelling foundation of elementary symmetries, which also support information (aka minus entropy, Kullback-Leibler) H(p;q) as the unique measure of divergence from source probability distribution q to destination p. Because the only compatible connective H is from≠to asymmetric, H(p;q)≠H(q;p), there can be no compatible geometrical distance (which would necessarily be from=to symmetric). Hence there is no distance relationship compatible with the structure of probability theory. Metrics g and densities sqrt(det(g)) interpreted as prior probabilities follow from the definition of distance, and must fail likewise. Various metrics and corresponding priors have been proposed, Fisher's being the most popular, but all must behave unacceptably. This is illustrated with simple counter-examples.

  9. Integrating TITAN2D Geophysical Mass Flow Model with GIS

    NASA Astrophysics Data System (ADS)

    Namikawa, L. M.; Renschler, C.

    2005-12-01

    TITAN2D simulates geophysical mass flows over natural terrain using depth-averaged granular flow models and requires spatially distributed parameter values to solve differential equations. Since a Geographical Information System (GIS) main task is integration and manipulation of data covering a geographic region, the use of a GIS for implementation of simulation of complex, physically-based models such as TITAN2D seems a natural choice. However, simulation of geophysical flows requires computationally intensive operations that need unique optimizations, such as adaptative grids and parallel processing. Thus GIS developed for general use cannot provide an effective environment for complex simulations and the solution is to develop a linkage between GIS and simulation model. The present work presents the solution used for TITAN2D where data structure of a GIS is accessed by simulation code through an Application Program Interface (API). GRASS is an open source GIS with published data formats thus GRASS data structure was selected. TITAN2D requires elevation, slope, curvature, and base material information at every cell to be computed. Results from simulation are visualized by a system developed to handle the large amount of output data and to support a realistic dynamic 3-D display of flow dynamics, which requires elevation and texture, usually from a remote sensor image. Data required by simulation is in raster format, using regular rectangular grids. GRASS format for regular grids is based on data file (binary file storing data either uncompressed or compressed by grid row), header file (text file, with information about georeferencing, data extents, and grid cell resolution), and support files (text files, with information about color table and categories names). The implemented API provides access to original data (elevation, base material, and texture from imagery) and slope and curvature derived from elevation data. From several existing methods to estimate slope and curvature from elevation, the selected one is based on estimation by a third-order finite difference method, which has shown to perform better or with minimal difference when compared to more computationally expensive methods. Derivatives are estimated using weighted sum of 8 grid neighbor values. The method was implemented and simulation results compared to derivatives estimated by a simplified version of the method (uses only 4 neighbor cells) and proven to perform better. TITAN2D uses an adaptative mesh grid, where resolution (grid cell size) is not constant, and visualization tools also uses texture with varying resolutions for efficient display. The API supports different resolutions applying bilinear interpolation when elevation, slope and curvature are required at a resolution higher (smaller cell size) than the original and using a nearest cell approach for elevations with lower resolution (larger) than the original. For material information nearest neighbor method is used since interpolation on categorical data has no meaning. Low fidelity characteristic of visualization allows use of nearest neighbor method for texture. Bilinear interpolation estimates the value at a point as the distance-weighted average of values at the closest four cell centers, and interpolation performance is just slightly inferior compared to more computationally expensive methods such as bicubic interpolation and kriging.

  10. Studies in quantum geometry

    NASA Astrophysics Data System (ADS)

    Bates, Brandon D.

    The geometric defects associated with open strings have become a mainstay in the arsenal of the string theorist. These objects are intimately tied to the properties of spacetime. D-branes have been well studied in the nineties and orientifolds are only now been thoroughly investigated. This thesis is built on two different studies. The first, done with Koenraad Schalm and Chuck Doran attempts to analyze the possible Orientifolds and their moduli, starting from Gepner models of the spacetime. The main focus was on elliptical compactifications, as this could be used as building block for more complex geometries. It is noteworthy that the orientifolds place constraints on the possible spacetime geometries, whilst also being characterized by the geometrical nature of the involutions defining them. The second study of this thesis, which was done with Frederik Denef, is on the low energy manifestations of D-branes as supergravity attractor solutions. Four dimensional N = 2 supergravity has regular, stationary, asymptotically flat BPS solutions with intrinsic angular momentum, describing bound states of separate extremal black holes with mutually nonlocal charges. Though the existence and some properties of these solutions were established some time ago, fully explicit analytic solutions were lacking thus far. In this study this gap is filled. We found that in general explicit solutions can be constructed whenever an explicit formula is known in the theory at hand for the Bekenstein-Hawking entropy of a single black hole as a function of its charges, and illustrated this with some simple examples. We also found an example of moduli-dependent black hole entropy.

  11. Preliminary abatement device evaluation: 1D-2D KGM cyclone design

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cyclones are predominately used in controlling cotton gin particulate matter (PM) emissions. The most commonly used cyclone designs are the 2D-2D and 1D-3D; however other designs such as the 1D-2D KGM have or are currently being used. A 1D-2D cyclone has a barrel length equal to the barrel diamete...

  12. 50 CFR Table 2d to Part 679 - Species Codes-Non-FMP Species

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Species Codes-Non-FMP Species 2d Table 2d to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 2d Table 2d to Part...

  13. 50 CFR Table 2d to Part 679 - Species Codes-Non-FMP Species

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Species Codes-Non-FMP Species 2d Table 2d to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 2d Table 2d to Part...

  14. Influence of amino acid residue 374 of cytochrome P-450 2D6 (CYP2D6) on the regio- and enantio-selective metabolism of metoprolol.

    PubMed Central

    Ellis, S W; Rowland, K; Ackland, M J; Rekka, E; Simula, A P; Lennard, M S; Wolf, C R; Tucker, G T

    1996-01-01

    Cytochrome P-450 2D6 (CYP2D6) is an important human drug-metabolizing enzyme responsible for the oxidation of more than 30 widely used therapeutic agents. The enzymes encoded by the published genomic [Kimura, Umeno, Skoda, Meyer and Gonzalez (1989) Am. J. Hum. Genet. 45, 889-904] and cDNA [Gonzalez, Skoda, Kimura, Umeno, Zanger, Nebert, Gelboin, Hardwick and Meyer (1988) Nature 331, 442-446] sequences of CYP2D6, and presumed to represent wild-type sequences, differ at residue 374 and encode valine (CYP2D6-Val) and methionine (CYP2D6-Met) respectively. The influence of this amino acid difference on cytochrome P-450 expression, ligand binding, catalysis and stereoselective oxidation of metoprolol was investigated by the heterologous expression of the corresponding cDNAs in the yeast Saccharomyces cerevisiae. The level of expression of apo- and holo-protein was similar with each form of CYP2D6 cDNA, and the binding affinities of a series of ligands to CYP2D6-Val and CYP2D6-Met were identical. The enantioselective O-demethylation and alpha-hydroxylation of metoprolol were also similar with each form of CYP2D6, O-demethylation being R-(+)- enantioselective (CYP2D6-Val: R/S, 1.6; CYP2D6-Met: R/S, 1.4), whereas alpha-hydroxylation showed a preference for S-(-)-metoprolol (CYP2D6-Val: R/S, 0.7; CYP2D6-Met: R/S, 0.8). However, although the favoured regiomer overall was O-demethylmetoprolol (ODM), the regioselectivity for O-demethylation of each metoprolol enantiomer was significantly greater for CYP2D6-Val [R-(+)-: ODM/alpha-hydroxymetoprolol (alpha OH), 5.9; S-(-)-: ODM/alpha OH, 2.5) than that observed for CYP2D6-Met [R-(+)-: ODM/alpha OH, 2.2; S-(-)-: ODM/alpha OH, 1.4]. The stereoselective properties of CYP2D6-Val were consistent with those observed for CYP2D6 in human liver microsomes. The difference in the stereoselective properties of CYP2D6-Val and CYP2D6-Met were rationalized with respect to a homology model of the active site of CYP2D6 based on an alignment with the crystal structure of the bacterial cytochrome P-450BM-3' CYP102. PMID:8687412

  15. Constrained geometries in soap froth dynamics

    NASA Astrophysics Data System (ADS)

    Ruskin, H. J.; Feng, Y.

    2002-11-01

    Soap froths as archetypal disordered cellular structures, exhibiting spatial and temporal evolution, have been predominantly studied in terms of their topological properties. Recently, constrained geometries in froth have attracted attention, since these arise both from existing or natural structure or, more usually, can be artificially configured. Using a direct simulation method, which retains detailed information on bubble (cell) mechanisms, we have investigated dynamics in 2D froths with various initial structures corresponding to controlled disorder. In particular, we examine the special case of a defect ring surrounding a central inclusion in a uniform froth, for different number of defects and ring radius. This geometry permits comparison with shell theory, as well as insight on dynamics of a virtual phase (as defined for persistence and non-equilibrium processes in general). It appears that defect location and pattern of inclusion in the virtual phase cause considerable variation in the evolutionary behaviour, leading to non-universal exponents for the phase dynamics. This is probably explained by the fact that the froth is still in the transient period over simulation time scales, rather than achieving the final stage of persistence. However, distinctive patterns of response can be identified for the different froth regions, despite system size limitations, with topological and other properties indicating that a quasi-equilibrium results.

  16. Electron delocalization patterns in models of distorted (D2d) mixed-valence cubanes

    NASA Astrophysics Data System (ADS)

    Marks, Alison J.

    2008-08-01

    Low-symmetry distortions are present in cubanes such as Fe4S4, but their effects on electron delocalization properties are not well-understood. Mixed-valence cubanes often exhibit experimentally measurable ``pair delocalization'' of a delocalizable electron. An important question is, what is the role of physical interactions (vibronic, electronic, exchange) and symmetry distortions in determining the electron delocalization pattern? Semiclassical models are used to explore the electron delocalization patterns of S=12 tetragonally (D2d) distorted mixed-valence cubanes comprising four metal centers with bridging ligands, a single delocalizable ``excess'' electron, and either closed-shell or open-shell ion cores. Phase diagrams show that distorted S=12 ground state cubanes with antiferromagnetic exchange (as found in nature) have delocalization patterns qualitatively similar to those of an S=12 model with no Heisenberg exchange, suggesting that exchange is not necessarily a dominant factor in determining electron delocalization properties. The open-shell model reveals two types of pair delocalization for the S=12 ground state, with differing dimer subunit spins for compressed and elongated geometries. Previous studies emphasize the importance of exchange interactions for pair delocalization. Here, it is shown that electron exchange is not always necessary for pair delocalization and that it can be achieved with relatively small tetragonal distortions from tetrahedral (Td) symmetry. The results contradict those of an earlier theoretical study of distorted Fe4S4 clusters, which concluded that distortions of lower symmetry than D2d are necessary to induce a transition to pair delocalization.

  17. A novel time dependent gamma evaluation function for dynamic 2D and 3D dose distributions

    NASA Astrophysics Data System (ADS)

    Podesta, Mark; CGG Persoon, Lucas; Verhaegen, Frank

    2014-10-01

    Modern external beam radiotherapy requires detailed verification and quality assurance so that confidence can be placed on both the delivery of a single treatment fraction and on the consistency of delivery throughout the treatment course. To verify dose distributions, a comparison between prediction and measurement must be made. Comparisons between two dose distributions are commonly performed using a Gamma evaluation which is a calculation of two quantities on a pixel by pixel basis; the dose difference, and the distance to agreement. By providing acceptance criteria (e.g. 3%, 3?mm), the function will find the most appropriate match within its two degrees of freedom. For complex dynamic treatments such as IMRT or VMAT it is important to verify the dose delivery in a time dependent manner and so a gamma evaluation that includes a degree of freedom in the time domain via a third parameter, time to agreement, is presented here. A C++ (mex) based gamma function was created that could be run on either CPU and GPU computing platforms that would allow a degree of freedom in the time domain. Simple test cases were created in both 2D and 3D comprising of simple geometrical shapes with well-defined boundaries varying over time. Changes of varying magnitude in either space or time were introduced and repeated gamma analyses were performed varying the criteria. A clinical VMAT case was also included, artificial air bubbles of varying size were introduced to a patient geometry, along with shifts of varying magnitude in treatment time. For all test cases where errors in distance, dose or time were introduced, the time dependent gamma evaluation could accurately highlight the errors. The time dependent gamma function presented here allows time to be included as a degree of freedom in gamma evaluations. The function allows for 2D and 3D data sets which are varying over time to be compared using appropriate criteria without penalising minor offsets of subsequent radiation fields in time.

  18. Experimental and Computational Study of Multiphase Flow Hydrodynamics in 2D Trickle Bed Reactors

    NASA Astrophysics Data System (ADS)

    Nadeem, H.; Ben Salem, I.; Kurnia, J. C.; Rabbani, S.; Shamim, T.; Sassi, M.

    2014-12-01

    Trickle bed reactors are largely used in the refining processes. Co-current heavy oil and hydrogen gas flow downward on catalytic particle bed. Fine particles in the heavy oil and/or soot formed by the exothermic catalytic reactions deposit on the bed and clog the flow channels. This work is funded by the refining company of Abu Dhabi and aims at mitigating pressure buildup due to fine deposition in the TBR. In this work, we focus on meso-scale experimental and computational investigations of the interplay between flow regimes and the various parameters that affect them. A 2D experimental apparatus has been built to investigate the flow regimes with an average pore diameter close to the values encountered in trickle beds. A parametric study is done for the development of flow regimes and the transition between them when the geometry and arrangement of the particles within the porous medium are varied. Liquid and gas flow velocities have also been varied to capture the different flow regimes. Real time images of the multiphase flow are captured using a high speed camera, which were then used to characterize the transition between the different flow regimes. A diffused light source was used behind the 2D Trickle Bed Reactor to enhance visualizations. Experimental data shows very good agreement with the published literature. The computational study focuses on the hydrodynamics of multiphase flow and to identify the flow regime developed inside TBRs using the ANSYS Fluent Software package. Multiphase flow inside TBRs is investigated using the "discrete particle" approach together with Volume of Fluid (VoF) multiphase flow modeling. The effect of the bed particle diameter, spacing, and arrangement are presented that may be used to provide guidelines for designing trickle bed reactors.

  19. Interactive initialization of 2D/3D rigid registration

    SciTech Connect

    Gong, Ren Hui; Güler, Özgür; Kürklüoglu, Mustafa; Lovejoy, John; Yaniv, Ziv

    2013-12-15

    Purpose: Registration is one of the key technical components in an image-guided navigation system. A large number of 2D/3D registration algorithms have been previously proposed, but have not been able to transition into clinical practice. The authors identify the primary reason for the lack of adoption with the prerequisite for a sufficiently accurate initial transformation, mean target registration error of about 10 mm or less. In this paper, the authors present two interactive initialization approaches that provide the desired accuracy for x-ray/MR and x-ray/CT registration in the operating room setting. Methods: The authors have developed two interactive registration methods based on visual alignment of a preoperative image, MR, or CT to intraoperative x-rays. In the first approach, the operator uses a gesture based interface to align a volume rendering of the preoperative image to multiple x-rays. The second approach uses a tracked tool available as part of a navigation system. Preoperatively, a virtual replica of the tool is positioned next to the anatomical structures visible in the volumetric data. Intraoperatively, the physical tool is positioned in a similar manner and subsequently used to align a volume rendering to the x-ray images using an augmented reality (AR) approach. Both methods were assessed using three publicly available reference data sets for 2D/3D registration evaluation. Results: In the authors' experiments, the authors show that for x-ray/MR registration, the gesture based method resulted in a mean target registration error (mTRE) of 9.3 ± 5.0 mm with an average interaction time of 146.3 ± 73.0 s, and the AR-based method had mTREs of 7.2 ± 3.2 mm with interaction times of 44 ± 32 s. For x-ray/CT registration, the gesture based method resulted in a mTRE of 7.4 ± 5.0 mm with an average interaction time of 132.1 ± 66.4 s, and the AR-based method had mTREs of 8.3 ± 5.0 mm with interaction times of 58 ± 52 s. Conclusions: Based on the authors' evaluation, the authors conclude that the registration approaches are sufficiently accurate for initializing 2D/3D registration in the OR setting, both when a tracking system is not in use (gesture based approach), and when a tracking system is already in use (AR based approach)

  20. Cloud Geometry Effects on Atmospheric Solar Absorption.

    NASA Astrophysics Data System (ADS)

    Fu, Qiang; Cribb, M. C.; Barker, H. W.; Krueger, S. K.; Grossman, A.

    2000-04-01

    A 3D broadband solar radiative transfer scheme is formulated by integrating a Monte Carlo photon transport algorithm with the Fu-Liou radiation model. It is applied to fields of tropical mesoscale convective clouds and subtropical marine boundary layer clouds that were generated by a 2D cloud-resolving model. The effects of cloud geometry on the radiative energy budget are examined by comparing the full-resolution Monte Carlo results with those from the independent column approximation (ICA) that applies the plane-parallel radiation model to each column.For the tropical convective cloud system, it is found that cloud geometry effects always enhance atmospheric solar absorption regardless of solar zenith angle. In a large horizontal domain (512 km), differences in domain-averaged atmospheric absorption between the Monte Carlo and the ICA are less than 4 W m2 in the daytime. However, for a smaller domain (e.g., 75 km) containing a cluster of deep convective towers, domain-averaged absorption can be enhanced by more than 20 W m2. For a subtropical marine boundary layer cloud system during the stratus-to-cumulus transition, calculations show that the ICA works very well for domain-averaged fluxes of the stratocumulus cloud fields even for a very small domain (4.8 km). For the trade cumulus cloud field, the effects of cloud sides and horizontal transport of photons become more significant. Calculations have also been made for both cloud systems including black carbon aerosol and a water vapor continuum. It is found that cloud geometry produces no discernible effects on the absorption enhancement due to the black carbon aerosol and water vapor continuum.The current study indicates that the atmospheric absorption enhancement due to cloud-related 3D photon transport is small. This enhancement could not explain the excess absorption suggested by recent studies.