Science.gov

Sample records for 2d sph simulations

  1. An improved SPH scheme for cosmological simulations

    NASA Astrophysics Data System (ADS)

    Beck, A. M.; Murante, G.; Arth, A.; Remus, R.-S.; Teklu, A. F.; Donnert, J. M. F.; Planelles, S.; Beck, M. C.; Förster, P.; Imgrund, M.; Dolag, K.; Borgani, S.

    2016-01-01

    We present an implementation of smoothed particle hydrodynamics (SPH) with improved accuracy for simulations of galaxies and the large-scale structure. In particular, we implement and test a vast majority of SPH improvement in the developer version of GADGET-3. We use the Wendland kernel functions, a particle wake-up time-step limiting mechanism and a time-dependent scheme for artificial viscosity including high-order gradient computation and shear flow limiter. Additionally, we include a novel prescription for time-dependent artificial conduction, which corrects for gravitationally induced pressure gradients and improves the SPH performance in capturing the development of gas-dynamical instabilities. We extensively test our new implementation in a wide range of hydrodynamical standard tests including weak and strong shocks as well as shear flows, turbulent spectra, gas mixing, hydrostatic equilibria and self-gravitating gas clouds. We jointly employ all modifications; however, when necessary we study the performance of individual code modules. We approximate hydrodynamical states more accurately and with significantly less noise than standard GADGET-SPH. Furthermore, the new implementation promotes the mixing of entropy between different fluid phases, also within cosmological simulations. Finally, we study the performance of the hydrodynamical solver in the context of radiative galaxy formation and non-radiative galaxy cluster formation. We find galactic discs to be colder and more extended and galaxy clusters showing entropy cores instead of steadily declining entropy profiles. In summary, we demonstrate that our improved SPH implementation overcomes most of the undesirable limitations of standard GADGET-SPH, thus becoming the core of an efficient code for large cosmological simulations.

  2. SPH and Eulerian underwater bubble collapse simulations

    SciTech Connect

    Swegle, J.W.; Kipp, M.E.

    1998-05-01

    SPH (Smoothed Particle Hydrodynamics) is a gridless Lagrangian technique which is appealing as a possible alternative to numerical techniques currently used to analyze high deformation impulsive loading events. Previously, the SPH algorithm has been subjected to detailed testing and analysis to determine the feasibility of using the coupled finite-element/SPH code PRONTO/SPH for the analysis of various types of underwater explosion problems involving fluid-structure and shock-structure interactions. Here, SPH and Eulerian simulations are used to study the details of underwater bubble collapse, particularly the formation of re-entrant jets during collapse, and the loads generated on nearby structures by the jet and the complete collapse of the bubble. Jet formation is shown to be due simply to the asymmetry caused by nearby structures which disrupt the symmetry of the collapse. However, the load generated by the jet is a minor precursor to the major loads which occur at the time of complete collapse of the bubble.

  3. SPH (smoothed particle hydrodynamics) simulations of hypervelocity impacts

    SciTech Connect

    Cloutman, L.D.

    1991-01-24

    The smoothed particle hydrodynamics (SPH) method has been used to simulate several cases of hypervelocity impact in an exploratory study to determine the suitability of the method for such problems. The calculations compare favorably with experimental results and with other numerical simulations. We discuss the requirements that must be satisfied for SPH to produce accurate simulations of such problems. 18 refs., 9 figs.

  4. Water Flow Simulation using Smoothed Particle Hydrodynamics (SPH)

    NASA Technical Reports Server (NTRS)

    Vu, Bruce; Berg, Jared; Harris, Michael F.

    2014-01-01

    Simulation of water flow from the rainbird nozzles has been accomplished using the Smoothed Particle Hydrodynamics (SPH). The advantage of using SPH is that no meshing is required, thus the grid quality is no longer an issue and accuracy can be improved.

  5. Growth of galaxies in SPH simulations

    NASA Astrophysics Data System (ADS)

    Keres, Dusan

    We explore the growth of galaxies formed in self-consistent Smoothed Particle Hydrodynamic (SPH) cosmological simulations. In the first Chapter, we examine the temperature history of gas accreted by forming galaxies in SPH simulations. Some of this gas follows the track expected in the conventional picture of galaxy formation, shock heating to roughly the virial temperature of the galaxy potential well ( T ~ 10 6 K for a Milky Way type galaxy) before cooling, condensing, and forming stars. However, a large fraction of the accreted gas radiates its acquired gravitational energy at much lower temperatures, typically T < 10 5 K, and the histogram of maximum gas temperatures is clearly bimodal. The "cold mode" of gas accretion dominates for low mass galaxies (baryonic mass M gal [Special characters omitted.] 10 10.3 [Special characters omitted.] or halo mass M halo [Special characters omitted.] 10 11.4 [Special characters omitted.] ), while the conventional "hot mode" dominates the growth of high mass systems. Cold accretion is often directed along filaments, allowing galaxies to efficiently draw gas from large distances, while hot accretion is quasi-spherical. The galaxy and halo mass dependence leads to a redshift and environmental dependence of the cold and hot mode accretion rates, with cold mode dominating at high redshifts and in low density regions today, and hot mode dominating in group and cluster environments at low redshifts. The cosmic star formation rate tracks the overall history of gas accretion, and its decline at low redshifts follows the combined decline of the cold and hot mode accretion rates. The drop in cold accretion is driven by the decreasing infall rate of material into halos, while for hot accretion this slower mass growth is further modified by the longer cooling times within larger halos. If we allowed hot accretion to be suppressed by conduction or AGN feedback, then the simulation predictions would change in interesting ways, perhaps

  6. Unified semi-analytical wall boundary conditions applied to 2-D incompressible SPH

    NASA Astrophysics Data System (ADS)

    Leroy, A.; Violeau, D.; Ferrand, M.; Kassiotis, C.

    2014-03-01

    This work aims at improving the 2-D incompressible SPH model (ISPH) by adapting it to the unified semi-analytical wall boundary conditions proposed by Ferrand et al. [10]. The ISPH algorithm considered is as proposed by Lind et al. [25], based on the projection method with a divergence-free velocity field and using a stabilising procedure based on particle shifting. However, we consider an extension of this model to Reynolds-Averaged Navier-Stokes equations based on the k-ɛ turbulent closure model, as done in [10]. The discrete SPH operators are modified by the new description of the wall boundary conditions. In particular, a boundary term appears in the Laplacian operator, which makes it possible to accurately impose a von Neumann pressure wall boundary condition that corresponds to impermeability. The shifting and free-surface detection algorithms have also been adapted to the new boundary conditions. Moreover, a new way to compute the wall renormalisation factor in the frame of the unified semi-analytical boundary conditions is proposed in order to decrease the computational time. We present several verifications to the present approach, including a lid-driven cavity, a water column collapsing on a wedge and a periodic schematic fish-pass. Our results are compared to Finite Volumes methods, using Volume of Fluids in the case of free-surface flows. We briefly investigate the convergence of the method and prove its ability to model complex free-surface and turbulent flows. The results are generally improved when compared to a weakly compressible SPH model with the same boundary conditions, especially in terms of pressure prediction.

  7. RAM simulation model for SPH/RSV systems

    SciTech Connect

    Schryver, J.C.; Primm, A.H.; Nelson, S.C.

    1995-12-31

    The US Army`s Project Manager, Crusader is sponsoring the development of technologies that apply to the Self-Propelled Howitzer (SPH), formerly the Advanced Field Artillery System (AFAS), and Resupply Vehicle (RSV), formerly the Future Armored Resupply Vehicle (FARV), weapon system. Oak Ridge National Laboratory (ORNL) is currently performing developmental work in support of the SPH/PSV Crusader system. Supportive analyses of reliability, availability, and maintainability (RAM) aspects were also performed for the SPH/RSV effort. During FY 1994 and FY 1995 OPNL conducted a feasibility study to demonstrate the application of simulation modeling for RAM analysis of the Crusader system. Following completion of the feasibility study, a full-scale RAM simulation model of the Crusader system was developed for both the SPH and PSV. This report provides documentation for the simulation model as well as instructions in the proper execution and utilization of the model for the conduct of RAM analyses.

  8. Hydrodynamic Simulations with the Godunov SPH

    NASA Astrophysics Data System (ADS)

    Borgani, S.; Murante, G.; Brunino, R.; Cha, S.-H.

    2012-07-01

    We present results based on an implementation of the Godunov Smoothed Particle Hydrodynamics (GSPH). We carry out controlled hydrodynamical three-dimensional tests, namely the Sod shock tube and the development of Kelvin-Helmholtz instabilities in a shear flow test. The results of our tests demonstrate GSPH provides a much improved description of contact discontinuities, with respect to SPH, and is able to follow the development of gas-dynamical instabilities, such as the Kevin-Helmholtz and the Rayleigh-Taylor ones.

  9. Vortical and nonlinear effects in the roll motion of a 2-D body in the free surface investigated by SPH

    NASA Astrophysics Data System (ADS)

    Olmez, O.; Ozbulut, M.; Yildiz, M.; Goren, O.

    2016-06-01

    The present study investigates the vortical and nonlinear effects in the roll motion of a 2-D body with square cross-sections by using Smoothed Particle Hydrodynamics (SPH). A 2-D rigid body with square cross-section is taken into account for the benchmark study and subjected to the oscillatory roll motion with a given angular frequency. The governing equations are continuity equation and Euler's equation with artificial viscosity term. Weakly Compressible SPH (WCSPH) scheme is employed for the discretization of the governing equations. Velocities of the fluid particles are updated by means of XSPH+Artificial Particle Displacement (VXSPH+APD) algorithm. In this method only the free surface fluid particles are subjected to VXSPH algorithm while the APD algorithm is employed for the fully populated flow regions. The hybrid usage of numerical treatment keeps free surface particles together by creating an artificial surface tension on the free surface. VXSPH+APD is a proven numerical treatment to provide the most accurate results for this type of free surface flows (Ozbulut et al. 2014). The results of the present study are compared with those of the experimental studies as well as with those of the numerical methods obtained from the current literature.

  10. An improved sink particle algorithm for SPH simulations

    NASA Astrophysics Data System (ADS)

    Hubber, D. A.; Walch, S.; Whitworth, A. P.

    2013-04-01

    Numerical simulations of star formation frequently rely on the implementation of sink particles: (a) to avoid expending computational resource on the detailed internal physics of individual collapsing protostars, (b) to derive mass functions, binary statistics and clustering kinematics (and hence to make comparisons with observation), and (c) to model radiative and mechanical feedback; sink particles are also used in other contexts, for example to represent accreting black holes in galactic nuclei. We present a new algorithm for creating and evolving sink particles in smoothed particle hydrodynamic (SPH) simulations, which appears to represent a significant improvement over existing algorithms - particularly in situations where sinks are introduced after the gas has become optically thick to its own cooling radiation and started to heat up by adiabatic compression. (i) It avoids spurious creation of sinks. (ii) It regulates the accretion of matter on to a sink so as to mitigate non-physical perturbations in the vicinity of the sink. (iii) Sinks accrete matter, but the associated angular momentum is transferred back to the surrounding medium. With the new algorithm - and modulo the need to invoke sufficient resolution to capture the physics preceding sink formation - the properties of sinks formed in simulations are essentially independent of the user-defined parameters of sink creation, or the number of SPH particles used.

  11. Computer Simulations of Dwarf-Nova Outbursts with SPH

    NASA Astrophysics Data System (ADS)

    Ruoff, L.; Speith, R.

    Dwarf Novae are cataclysmic variables showing quasi-periodic outbursts of typical durations of a few days with amplitudes of 2-6 mag and recurrence times of days to months. The dwarf nova cycle is now commonly described in the framework of the disk instability (DI) model: The accretion disk which is the main source of luminosity during outburst is thought to be viscously and thermally unstable for a given value of the external mass inflow rate from the secondary. The corresponding surface-density vs. viscosity relation shows a typical S-like shape. This results in a limit cycle behaviour changing the disk structure from a cold state with low viscosity during quiescence to a high viscosity state during outburst, and vice versa. For our calculations we use a SPH algorithm including the entire viscous stress tensor according to the Navier-Stokes equation. In this code we have implemented a standard S-curve for the surface-density vs. viscosity relation based on results of vertical structure calculations performed by various other groups (e.g., Ludwig, Meyer-Hofmeister, Ritter). Our 2D computations show a variety of effects not encountered in the standard 1D approach. The transition to the hot state occurs gradually throughout the disk, as particles tend to mix up early as a result of scattering of density values in SPH. The disk will eventually settle to a steady state or grow and get tidally unstable, resulting in an outburst. We are not able to reproduce concentrical transition fronts in our calculations. Instead, in one class of calculations, outbursts tend to be initiated in spiral-shape density structures.

  12. Gas stripping in galaxy clusters: a new SPH simulation approach

    NASA Astrophysics Data System (ADS)

    Jáchym, P.; Palouš, J.; Köppen, J.; Combes, F.

    2007-09-01

    Aims:The influence of a time-varying ram pressure on spiral galaxies in clusters is explored with a new simulation method based on the N-body SPH/tree code GADGET. Methods: We have adapted the code to describe the interaction of two different gas phases, the diffuse hot intracluster medium (ICM) and the denser and colder interstellar medium (ISM). Both the ICM and ISM components are introduced as SPH particles. As a galaxy arrives on a highly radial orbit from outskirts to cluster center, it crosses the ICM density peak and experiences a time-varying wind. Results: Depending on the duration and intensity of the ISM-ICM interaction, early and late type galaxies in galaxy clusters with either a large or small ICM distribution are found to show different stripping efficiencies, amounts of reaccretion of the extra-planar ISM, and final masses. We compare the numerical results with analytical approximations of different complexity and indicate the limits of the Gunn & Gott simple stripping formula. Conclusions: Our investigations emphasize the role of the galactic orbital history to the stripping amount. We discuss the contribution of ram pressure stripping to the origin of the ICM and its metallicity. We propose gas accumulations like tails, filaments, or ripples to be responsible for stripping in regions with low overall ICM occurrence. Appendix A is only available in electronic form at http://www.aanda.org

  13. SPH numerical simulation of fluid flow through a porous media

    NASA Astrophysics Data System (ADS)

    Klapp-Escribano, Jaime; Mayoral-Villa, Estela; Rodriguez-Meza, Mario Alberto; de La Cruz-Sanchez, Eduardo; di G Sigalotti, Leonardo; Inin-Abacus Collaboration; Ivic Collaboration

    2013-11-01

    We have tested an improved a method for 3D SPH simulations of fluid flow through a porous media using an implementation of this method with the Dual-Physics code. This improvement makes it possible to simulate many particles (of the order of several million) in reasonable computer times because its execution on GPUs processors makes it possible to reduce considerably the simulation cost for large systems. Modifications in the initial configuration have been implemented in order to simulate different arrays and geometries for the porous media. The basic tests were reproduced and the performance was analyzed. Our 3D simulations of fluid flow through a saturated homogeneous porous media shows a discharge velocity proportional to the hydraulic gradient reproducing Darcy's law at small body forces. The results are comparable with values obtained in previous work and published in the literature for simulations of flow through periodic porous media. Our simulations for a non saturated porous media produce adequate qualitative results showing that a non steady state is generated. The relaxation time for these systems were obtained. Work partially supported by Cinvestav-ABACUS, CONACyT grant EDOMEX-2011-C01-165873.

  14. SPH Simulation of Impact of a Surge on a Wall

    NASA Astrophysics Data System (ADS)

    Diwakar, Manoj Kumar; Mohapatra, Pranab Kumar; Tripathi, Shivam

    2014-05-01

    Structures located on the downstream of a dam are prone to impact of the surge due to dam break flow. Ramsden (1996) experimentally studied the run-up height on a vertical wall due to propagation of bore and surge on dry bed and measured their impact on the wall. Mohapatra et al. (2000) applied Navier Stokes equations to numerically study the impact of bore on vertical and inclined walls. They also obtained the evolution of surge on dry bed. In the present work, the impact of a surge wave due to dam break flow against the wall is modeled with a two-dimensional smoothed particle hydrodynamics (SPH) model. SPH is a mesh-free method that relies on the particle view of the field problem and approximates the continuity and momentum equations on a set of particles. The method solves the strong form of Navier-Stokes equations. The governing equations are solved numerically in the vertical plane. The propagation of the surge wave, its impact and the maximum run-up on the wall located at the boundary are analyzed. Surface profile, velocity field and pressure distributions are simulated. Non-dimensional run-up height obtained from the present numerical model is 0.86 and is in good agreement with the available experimental data of Ramsden (1996) which is in the range of 0.75-0.9. Also, the simulated profile of the surge tip was comparable to the empirical equations refereed in Ramsden (1996). The model is applied to the study the maximum force and the run-up height on inclined walls with different inclinations. The results indicate that the maximum force and the run-up height on the wall increase with the increment of wall inclination. Comparison of numerical results with analytical solutions derived from shallow water equations clearly shows the breakdown of shallow water assumption during the impact. In addition to these results, the numerical simulation yields the complete velocity and pressure ?elds which may be used to design structures located in the path of a dam

  15. Realistic and efficient 2D crack simulation

    NASA Astrophysics Data System (ADS)

    Yadegar, Jacob; Liu, Xiaoqing; Singh, Abhishek

    2010-04-01

    Although numerical algorithms for 2D crack simulation have been studied in Modeling and Simulation (M&S) and computer graphics for decades, realism and computational efficiency are still major challenges. In this paper, we introduce a high-fidelity, scalable, adaptive and efficient/runtime 2D crack/fracture simulation system by applying the mathematically elegant Peano-Cesaro triangular meshing/remeshing technique to model the generation of shards/fragments. The recursive fractal sweep associated with the Peano-Cesaro triangulation provides efficient local multi-resolution refinement to any level-of-detail. The generated binary decomposition tree also provides efficient neighbor retrieval mechanism used for mesh element splitting and merging with minimal memory requirements essential for realistic 2D fragment formation. Upon load impact/contact/penetration, a number of factors including impact angle, impact energy, and material properties are all taken into account to produce the criteria of crack initialization, propagation, and termination leading to realistic fractal-like rubble/fragments formation. The aforementioned parameters are used as variables of probabilistic models of cracks/shards formation, making the proposed solution highly adaptive by allowing machine learning mechanisms learn the optimal values for the variables/parameters based on prior benchmark data generated by off-line physics based simulation solutions that produce accurate fractures/shards though at highly non-real time paste. Crack/fracture simulation has been conducted on various load impacts with different initial locations at various impulse scales. The simulation results demonstrate that the proposed system has the capability to realistically and efficiently simulate 2D crack phenomena (such as window shattering and shards generation) with diverse potentials in military and civil M&S applications such as training and mission planning.

  16. An improved weakly compressible SPH method for simulating free surface flows of viscous and viscoelastic fluids

    NASA Astrophysics Data System (ADS)

    Xu, Xiaoyang; Deng, Xiao-Long

    2016-04-01

    In this paper, an improved weakly compressible smoothed particle hydrodynamics (SPH) method is proposed to simulate transient free surface flows of viscous and viscoelastic fluids. The improved SPH algorithm includes the implementation of (i) the mixed symmetric correction of kernel gradient to improve the accuracy and stability of traditional SPH method and (ii) the Rusanov flux in the continuity equation for improving the computation of pressure distributions in the dynamics of liquids. To assess the effectiveness of the improved SPH algorithm, a number of numerical examples including the stretching of an initially circular water drop, dam breaking flow against a vertical wall, the impact of viscous and viscoelastic fluid drop with a rigid wall, and the extrudate swell of viscoelastic fluid have been presented and compared with available numerical and experimental data in literature. The convergent behavior of the improved SPH algorithm has also been studied by using different number of particles. All numerical results demonstrate that the improved SPH algorithm proposed here is capable of modeling free surface flows of viscous and viscoelastic fluids accurately and stably, and even more important, also computing an accurate and little oscillatory pressure field.

  17. SPH_1D: Hierarchical gravity/SPH treecode for simulations of interacting galaxies

    NASA Astrophysics Data System (ADS)

    Olson, Kevin M.; Dorband, John E.

    1999-12-01

    We describe a fast tree algorithm for gravitational N-body simulation on SIMD parallel computers. The tree construction uses fast, parallel sorts. The sorted lists are recursively divided along their x, y and z coordinates. This data structure is a completely balanced tree (i.e., each particle is paired with exactly one other particle) and maintains good spatial locality. An implementation of this tree-building algorithm on a 16k processor Maspar MP-1 performs well and constitutes only a small fraction (approximately 15%) of the entire cycle of finding the accelerations. Each node in the tree is treated as a monopole. The tree search and the summation of accelerations also perform well. During the tree search, node data that is needed from another processor is simply fetched. Roughly 55% of the tree search time is spent in communications between processors. We apply the code to two problems of astrophysical interest. The first is a simulation of the close passage of two gravitationally, interacting, disk galaxies using 65,636 particles. We also simulate the formation of structure in an expanding, model universe using 1,048,576 particles. Our code attains speeds comparable to one head of a Cray Y-MP, so single instruction, multiple data (SIMD) type computers can be used for these simulations. The cost/performance ratio for SIMD machines like the Maspar MP-1 make them an extremely attractive alternative to either vector processors or large multiple instruction, multiple data (MIMD) type parallel computers. With further optimizations (e.g., more careful load balancing), speeds in excess of today's vector processing computers should be possible.

  18. Simulation of surface tension in 2D and 3D with smoothed particle hydrodynamics method

    NASA Astrophysics Data System (ADS)

    Zhang, Mingyu

    2010-09-01

    The methods for simulating surface tension with smoothed particle hydrodynamics (SPH) method in two dimensions and three dimensions are developed. In 2D surface tension model, the SPH particle on the boundary in 2D is detected dynamically according to the algorithm developed by Dilts [G.A. Dilts, Moving least-squares particle hydrodynamics II: conservation and boundaries, International Journal for Numerical Methods in Engineering 48 (2000) 1503-1524]. The boundary curve in 2D is reconstructed locally with Lagrangian interpolation polynomial. In 3D surface tension model, the SPH particle on the boundary in 3D is detected dynamically according to the algorithm developed by Haque and Dilts [A. Haque, G.A. Dilts, Three-dimensional boundary detection for particle methods, Journal of Computational Physics 226 (2007) 1710-1730]. The boundary surface in 3D is reconstructed locally with moving least squares (MLS) method. By transforming the coordinate system, it is guaranteed that the interface function is one-valued in the local coordinate system. The normal vector and curvature of the boundary surface are calculated according to the reconstructed boundary surface and then surface tension force can be calculated. Surface tension force acts only on the boundary particle. Density correction is applied to the boundary particle in order to remove the boundary inconsistency. The surface tension models in 2D and 3D have been applied to benchmark tests for surface tension. The ability of the current method applying to the simulation of surface tension in 2D and 3D is proved.

  19. Simulating the Homunculus Nebula of Eta Carinae with an Innovative Multi-mass SPH Technique

    NASA Astrophysics Data System (ADS)

    Fitzpatrick, Benedict J. R.; Podsiadlowski, P.

    2010-01-01

    We present a multi-mass, mixed resolution SPH technique which allows greatly reduced particle number while obtaining high resolution in lower density areas. Two sets of SPH particles are used - high mass for high density regions, low mass for low density regions. Hydrodynamic interaction between the sets is performed with the use of 'buffer' or tracer particles for each set. This technique has many applications in high density contrast simulations such as common envelope spin-up and low mass loss winds and mass transfer in binaries. We use this technique to test a common envelope ejection origin for the Homunculus nebula around Eta Carinae.

  20. The Thermodynamic Model of a Moon Forming Disk Based on SPH Simulations

    NASA Astrophysics Data System (ADS)

    Nakajima, M.; Stevenson, D. J.

    2011-12-01

    According to the giant impact hypothesis, a Mars size body hits the proto-Earth in the late stage of Earth forming event (e.g. Benz et al., 1986, Thompson and Stevenson 1988). The impact generates a debris disk around the proto-Earth, from which the Moon is accreted. SPH simulations suggest that the silicate disk has high temperature (~ a few thousands K) and partially vaporized (~10-30% by mass) (Canup 2004). However, SPH does not determine the state of the resulting hydrostatic disk. To do this, we have taken the output of SPH, applied conservation of entropy, mass and angular momentum and corrected for the additional energy released upon quick relaxation to the hydrostatic Keplerian state. We find that the disk is remarkably uniform in entropy but is of lower entropy than the adjacent outer shell of Earth. Constant entropy implies a temperature variation, typically from 4500K (inner disk) to 2500K (outer disk) at the midplane. For grazing impact cases (impact angles: 40 - 60 degrees, impact velocity: escape velocity, mantle material: forsterite), 90% of the disk mass is within 10 Earth radius. The disk vapor mass fractions are about 10-20%, which are consistent with Canup (2004) results. This may be an underestimate because iron is more volatile than magnesium. Mass loss from this disk will be small. The effects of initial condition differences will be discussed in the presentation. This is the first attempt to create a bridge between SPH results and a thermodynamic disk model.

  1. Convergence of AMR and SPH simulations - I. Hydrodynamical resolution and convergence tests

    NASA Astrophysics Data System (ADS)

    Hubber, D. A.; Falle, S. A. E. G.; Goodwin, S. P.

    2013-06-01

    We compare the results for a set of hydrodynamical tests performed with the adaptive mesh refinement finite volume code, MG, and the smoothed particle hydrodynamics (SPH) code, SEREN. The test suite includes shock tube tests, with and without cooling, the non-linear thin-shell instability and the Kelvin-Helmholtz instability. The main conclusions are the following. (i) The two methods converge in the limit of high resolution and accuracy in most cases. All tests show good agreement when numerical effects (e.g. discontinuities in SPH) are properly treated. (ii) Both methods can capture adiabatic shocks and well-resolved cooling shocks perfectly well with standard prescriptions. However, they both have problems when dealing with under-resolved cooling shocks, or strictly isothermal shocks, at high Mach numbers. The finite volume code only works well at first order and even then requires some additional artificial viscosity. SPH requires either a larger value of the artificial viscosity parameter, αAV, or a modified form of the standard artificial viscosity term using the harmonic mean of the density, rather than the arithmetic mean. (iii) Some SPH simulations require larger kernels to increase neighbour number and reduce particle noise in order to achieve agreement with finite volume simulations (e.g. the Kelvin-Helmholtz instability). However, this is partly due to the need to reduce noise that can corrupt the growth of small-scale perturbations (e.g. the Kelvin-Helmholtz instability). In contrast, instabilities seeded from large-scale perturbations (e.g. the non-linear thin shell instability) do not require more neighbours and hence work well with standard SPH formulations and converge with the finite volume simulations. (iv) For purely hydrodynamical problems, SPH simulations take an order of magnitude longer to run than finite volume simulations when running at equivalent resolutions, i.e. when they both resolve the underlying physics to the same degree. This

  2. Simulation of Yeast Cooperation in 2D.

    PubMed

    Wang, M; Huang, Y; Wu, Z

    2016-03-01

    Evolution of cooperation has been an active research area in evolutionary biology in decades. An important type of cooperation is developed from group selection, when individuals form spatial groups to prevent them from foreign invasions. In this paper, we study the evolution of cooperation in a mixed population of cooperating and cheating yeast strains in 2D with the interactions among the yeast cells restricted to their small neighborhoods. We conduct a computer simulation based on a game theoretic model and show that cooperation is increased when the interactions are spatially restricted, whether the game is of a prisoner's dilemma, snow drifting, or mutual benefit type. We study the evolution of homogeneous groups of cooperators or cheaters and describe the conditions for them to sustain or expand in an opponent population. We show that under certain spatial restrictions, cooperator groups are able to sustain and expand as group sizes become large, while cheater groups fail to expand and keep them from collapse. PMID:26988702

  3. Comparative study of different SPH schemes on simulating violent water wave impact flows

    NASA Astrophysics Data System (ADS)

    Zheng, Xing; Ma, Qing-wei; Duan, Wen-yang

    2014-12-01

    Free surface flows are of significant interest in Computational Fluid Dynamics (CFD). However, violent water wave impact simulation especially when free surface breaks or impacts on solid wall can be a big challenge for many CFD techniques. Smoothed Particle Hydrodynamics (SPH) has been reported as a robust and reliable method for simulating violent free surface flows. Weakly compressible SPH (WCSPH) uses an equation of state with a large sound speed, and the results of the WCSPH can induce a noisy pressure field and spurious oscillation of pressure in time history for wave impact problem simulation. As a remedy, the truly incompressible SPH (ISPH) technique was introduced, which uses a pressure Poisson equation to calculate the pressure. Although the pressure distribution in the whole field obtained by ISPH is smooth, the stability of the techniques is still an open discussion. In this paper, a new free surface identification scheme and solid boundary handling method are introduced to improve the accuracy of ISPH. This modified ISPH is used to study dam breaking flow and violent tank sloshing flows. On the comparative study of WCSPH and ISPH, the accuracy and efficiency are assessed and the results are compared with the experimental data.

  4. Incompressible SPH Model for Simulating Violent Free-Surface Fluid Flows

    NASA Astrophysics Data System (ADS)

    Staroszczyk, Ryszard

    2014-06-01

    In this paper the problem of transient gravitational wave propagation in a viscous incompressible fluid is considered, with a focus on flows with fast-moving free surfaces. The governing equations of the problem are solved by the smoothed particle hydrodynamics method (SPH). In order to impose the incompressibility constraint on the fluid motion, the so-called projection method is applied in which the discrete SPH equations are integrated in time by using a fractional-step technique. Numerical performance of the proposed model has been assessed by comparing its results with experimental data and with results obtained by a standard (weakly compressible) version of the SPH approach. For this purpose, a plane dam-break flow problem is simulated, in order to investigate the formation and propagation of a wave generated by a sudden collapse of a water column initially contained in a rectangular tank, as well as the impact of such a wave on a rigid vertical wall. The results of simulations show the evolution of the free surface of water, the variation of velocity and pressure fields in the fluid, and the time history of pressures exerted by an impacting wave on a wall.

  5. SPH simulations of magnetic fields in galaxy clusters

    NASA Astrophysics Data System (ADS)

    Dolag, K.; Bartelmann, M.; Lesch, H.

    1999-08-01

    We perform cosmological, hydrodynamic simulations of magnetic fields in galaxy clusters. The computational code combines the special-purpose hardware Grape for calculating gravitational interaction, and smooth-particle hydrodynamics for the gas component. We employ the usual MHD equations for the evolution of the magnetic field in an ideally conducting plasma. As a first application, we focus on the question what kind of initial magnetic fields yield final field configurations within clusters which are compatible with Faraday-rotation measurements. Our main results can be summarised as follows: (i) Initial magnetic field strengths are amplified by approximately three orders of magnitude in cluster cores, one order of magnitude above the expectation from spherical collapse. (ii) Vastly different initial field configurations (homogeneous or chaotic) yield results that cannot significantly be distinguished. (iii) Micro-Gauss fields and Faraday-rotation observations are well reproduced in our simulations starting from initial magnetic fields of ~ 10(-9) G strength at redshift 15. Our results show that (i) shear flows in clusters are crucial for amplifying magnetic fields beyond simple compression, (ii) final field configurations in clusters are dominated by the cluster collapse rather than by the initial configuration, and (iii) initial magnetic fields of order 10(-9) G are required to match Faraday-rotation observations in real clusters.

  6. High Resolution P3M-GRAPE-SPH Simulations of PopIII Star Formation

    NASA Astrophysics Data System (ADS)

    Suwa, Tamon; Umemura, Masayuki; Sato, Daisuke; Susa, Hajime

    2008-03-01

    In order to investigate the mass distribution of Population III stars, we have developed high-resolution cosmological hydrodynamic simulations in a standard ΛCDM universe. We use a Particle-Particle-Particle-Mesh (P3M) scheme for gravity force calculations, where the PP part is calculated by GRAPE (special purpose board for gravity calculation). The baryon component is treated by Smoothed Particle Hydrodynamics (SPH) method. The simulations are performed on a newly developed dedicated PC-cluster system named FIRST simulator with the peak speed of 36 T flops at the University of Tsukuba. Using this simulator, we perform high-resolution simulations with 2×107 of dark matter and SPH particles, respectively. With this large number of particles, sub-solar mass resolution for baryon particles can be achieved all over the simulation box. Therefore, we can resolve small scale density fluctuations, which may play an important role in the formation of intermediate-mass Pop III stars formation.

  7. SEREN - a new SPH code for star and planet formation simulations. Algorithms and tests

    NASA Astrophysics Data System (ADS)

    Hubber, D. A.; Batty, C. P.; McLeod, A.; Whitworth, A. P.

    2011-05-01

    We present SEREN, a new hybrid Smoothed Particle Hydrodynamics and N-body code designed to simulate astrophysical processes such as star and planet formation. It is written in Fortran 95/2003 and has been parallelised using OpenMP. SEREN is designed in a flexible, modular style, thereby allowing a large number of options to be selected or disabled easily and without compromising performance. SEREN uses the conservative "grad-h" formulation of SPH, but can easily be configured to use traditional SPH or Godunov SPH. Thermal physics is treated either with a barotropic equation of state, or by solving the energy equation and modelling the transport of cooling radiation. A Barnes-Hut tree is used to obtain neighbour lists and compute gravitational accelerations efficiently, and an hierarchical time-stepping scheme is used to reduce the number of computations per timestep. Dense gravitationally bound objects are replaced by sink particles, to allow the simulation to be evolved longer, and to facilitate the identification of protostars and the compilation of stellar and binary properties. At the termination of a hydrodynamical simulation, SEREN has the option of switching to a pure N-body simulation, using a 4th-order Hermite integrator, and following the ballistic evolution of the sink particles (e.g. to determine the final binary statistics once a star cluster has relaxed). We describe in detail all the algorithms implemented in SEREN and we present the results of a suite of tests designed to demonstrate the fidelity of SEREN and its performance and scalability. Further information and additional tests of SEREN can be found at the web-page http://www.astro.group.shef.ac.uk/seren.

  8. SPH-based numerical simulations of flow slides in municipal solid waste landfills.

    PubMed

    Huang, Yu; Dai, Zili; Zhang, Weijie; Huang, Maosong

    2013-03-01

    Most municipal solid waste (MSW) is disposed of in landfills. Over the past few decades, catastrophic flow slides have occurred in MSW landfills around the world, causing substantial economic damage and occasionally resulting in human victims. It is therefore important to predict the run-out, velocity and depth of such slides in order to provide adequate mitigation and protection measures. To overcome the limitations of traditional numerical methods for modelling flow slides, a mesh-free particle method entitled smoothed particle hydrodynamics (SPH) is introduced in this paper. The Navier-Stokes equations were adopted as the governing equations and a Bingham model was adopted to analyse the relationship between material stress rates and particle motion velocity. The accuracy of the model is assessed using a series of verifications, and then flow slides that occurred in landfills located in Sarajevo and Bandung were simulated to extend its applications. The simulated results match the field data well and highlight the capability of the proposed SPH modelling method to simulate such complex phenomena as flow slides in MSW landfills. PMID:23315367

  9. Incompressible SPH method based on Rankine source solution for violent water wave simulation

    NASA Astrophysics Data System (ADS)

    Zheng, X.; Ma, Q. W.; Duan, W. Y.

    2014-11-01

    With wide applications, the smoothed particle hydrodynamics method (abbreviated as SPH) has become an important numerical tool for solving complex flows, in particular those with a rapidly moving free surface. For such problems, the incompressible Smoothed Particle Hydrodynamics (ISPH) has been shown to yield better and more stable pressure time histories than the traditional SPH by many papers in literature. However, the existing ISPH method directly approximates the second order derivatives of the functions to be solved by using the Poisson equation. The order of accuracy of the method becomes low, especially when particles are distributed in a disorderly manner, which generally happens for modelling violent water waves. This paper introduces a new formulation using the Rankine source solution. In the new approach to the ISPH, the Poisson equation is first transformed into another form that does not include any derivative of the functions to be solved, and as a result, does not need to numerically approximate derivatives. The advantage of the new approach without need of numerical approximation of derivatives is obvious, potentially leading to a more robust numerical method. The newly formulated method is tested by simulating various water waves, and its convergent behaviours are numerically studied in this paper. Its results are compared with experimental data in some cases and reasonably good agreement is achieved. More importantly, numerical results clearly show that the newly developed method does need less number of particles and so less computational costs to achieve the similar level of accuracy, or to produce more accurate results with the same number of particles compared with the traditional SPH and existing ISPH when it is applied to modelling water waves.

  10. Parallel peridynamics-SPH simulation of explosion induced soil fragmentation by using OpenMP

    NASA Astrophysics Data System (ADS)

    Fan, Houfu; Li, Shaofan

    2016-06-01

    In this work, we use the OpenMP-based shared-memory parallel programming to implement the recently developed coupling method of state-based peridynamics and smoothed particle hydrodynamics (PD-SPH), and we then employ the program to simulate dynamic soil fragmentation induced by the explosion of the buried explosives. The paper offers detailed technical description and discussion on the PD-SHP coupling algorithm and how to use the OpenMP shared-memory programming to implement such large-scale computation in a desktop environment, with an example to illustrate the basic computing principle and the parallel algorithm structure. In specific, the paper provides a complete OpenMP parallel algorithm for the PD-SPH scheme with the programming and parallelization details. Numerical examples of soil fragmentation caused by the buried explosives are also presented. Results show that the simulation carried out by the OpenMP parallel code is much faster than that by the corresponding serial computer code.

  11. SPH simulation of free surface flow over a sharp-crested weir

    NASA Astrophysics Data System (ADS)

    Ferrari, Angela

    2010-03-01

    In this paper the numerical simulation of a free surface flow over a sharp-crested weir is presented. Since in this case the usual shallow water assumptions are not satisfied, we propose to solve the problem using the full weakly compressible Navier-Stokes equations with the Tait equation of state for water. The numerical method used consists of the new meshless Smooth Particle Hydrodynamics (SPH) formulation proposed by Ferrari et al. (2009) [8], that accurately tracks the free surface profile and provides monotone pressure fields. Thus, the unsteady evolution of the complex moving material interface (free surface) can been properly solved. The simulations involving about half a million of fluid particles have been run in parallel on two of the most powerful High Performance Computing (HPC) facilities in Europe. The validation of the results has been carried out analysing the pressure field and comparing the free surface profiles obtained with the SPH scheme with experimental measurements available in literature [18]. A very good quantitative agreement has been obtained.

  12. Lahar simulation with SPH and field calibration at the Colima Volcano (Mexico)

    NASA Astrophysics Data System (ADS)

    Calvo, Leticia; Haddad, Bouchra; Capra, Lucia; Palacios, David

    2015-04-01

    As a result of the frequent effusive activity of Volcán de Colima (10° 30'44''N, 103° 37'02'' W), the most active volcano in Mexico, plenty of rain triggered lahars are produced, especially during the rainy season. Along the recent period of activity, particularly from 2010, many of these lahars channelled through the main ravines of the volcano and reach large distances, representing high risk for more than 10,000 people at the surroundings. Modeling of lahars has become an important tool in the assessment of the related hazards, in order to undertake appropriate mitigation actions and reduce the associated risks. Recent lahars at the Colima Volcano are well documented, so they can be used to prove the accuracy of modelling. In this work, we used the SPH (Smoothed Particle Hydrodynamics) method, a depth integrated coupled model created by Pastor in 2005, to replicate the propagation stage of 3 recent Colima lahars occurred on Montegrande ravine in 1992, 2011 and 2012. The studied events include hyperconcentrated, debris and a mixture of the previous flow natures. The inputs used for the SPH simulations were the initial point, volume of each lahar and an adapted morphology of its mass. Field data used to verify the SPH results include the stopping point of the lahar, its path, velocity and height values, as the floodplain area. All this information was a result of fieldwork recognition (cross section profiles of the inner part of the ravine) and free satellite imagery analysis. The best results were obtained using Bingham rheology. The proposed parameters to simulate Colima lahars were 20 Pa of yield strength and 30 Pa.s of viscosity for the 1992 lahar (hyperconcentrated flow), 200 Pa and 50 Pa.s in case of the 2011 debris flow, and finally 20 Pa and 24 Pa.s for the 2012 event, whose nature evolved from debris to an hyperconcentrated flow. In all cases a 1900 kg/m3 density was used. Highly accurate results showed the relevant role played by rheological

  13. SPH Simulation of Liquid Scattering from the Edge of a Rotary Atomizer

    NASA Astrophysics Data System (ADS)

    Izawa, Seiichiro; Ito, Takuya; Shigeta, Masaya; Fukunishi, Yu

    2013-11-01

    Three-dimensional incompressible SPH method is used to simulate the behavior of liquid scattering from the edge of a rotary atomizer. Rotary atomizers have been widely used for spraying, painting and coating, for instance, in the automobile industry. However, how the spray droplets are formed after leaving the edge of the rotary atomizer is not well understood, because the scale of the phenomenon is very small and the speed of rotation is very fast. The present computational result shows that while the liquid forms a film on the surface of the rotating disk of the atomizer, it quickly deforms into many thin columns after leaving the disk edge, and these columns soon break up into fine droplets which spread out in the radial direction. The size of droplets tends to become smaller with the increase in the disk rotating speed. The results show good agreement with the experimental observations.

  14. Development of a coupled discrete element (DEM)-smoothed particle hydrodynamics (SPH) simulation method for polyhedral particles

    NASA Astrophysics Data System (ADS)

    Nassauer, Benjamin; Liedke, Thomas; Kuna, Meinhard

    2016-03-01

    In the present paper, the direct coupling of a discrete element method (DEM) with polyhedral particles and smoothed particle hydrodynamics (SPH) is presented. The two simulation techniques are fully coupled in both ways through interaction forces between the solid DEM particles and the fluid SPH particles. Thus this simulation method provides the possibility to simulate the individual movement of polyhedral, sharp-edged particles as well as the flow field around these particles in fluid-saturated granular matter which occurs in many technical processes e.g. wire sawing, grinding or lapping. The coupled method is exemplified and validated by the simulation of a particle in a shear flow, which shows good agreement with analytical solutions.

  15. Simulating MEMS Chevron Actuator for Strain Engineering 2D Materials

    NASA Astrophysics Data System (ADS)

    Vutukuru, Mounika; Christopher, Jason; Bishop, David; Swan, Anna

    2D materials pose an exciting paradigm shift in the world of electronics. These crystalline materials have demonstrated high electric and thermal conductivities and tensile strength, showing great potential as the new building blocks of basic electronic circuits. However, strain engineering 2D materials for novel devices remains a difficult experimental feat. We propose the integration of 2D materials with MEMS devices to investigate the strain dependence on material properties such as electrical and thermal conductivity, refractive index, mechanical elasticity, and band gap. MEMS Chevron actuators, provides the most accessible framework to study strain in 2D materials due to their high output force displacements for low input power. Here, we simulate Chevron actuators on COMSOL to optimize actuator design parameters and accurately capture the behavior of the devices while under the external force of a 2D material. Through stationary state analysis, we analyze the response of the device through IV characteristics, displacement and temperature curves. We conclude that the simulation precisely models the real-world device through experimental confirmation, proving that the integration of 2D materials with MEMS is a viable option for constructing novel strain engineered devices. The authors acknowledge support from NSF DMR1411008.

  16. Dynamic simulations of geologic materials using combined FEM/DEM/SPH analysis

    SciTech Connect

    Morris, J P; Johnson, S M

    2008-03-26

    An overview of the Lawrence Discrete Element Code (LDEC) is presented, and results from a study investigating the effect of explosive and impact loading on geologic materials using the Livermore Distinct Element Code (LDEC) are detailed. LDEC was initially developed to simulate tunnels and other structures in jointed rock masses using large numbers of polyhedral blocks. Many geophysical applications, such as projectile penetration into rock, concrete targets, and boulder fields, require a combination of continuum and discrete methods in order to predict the formation and interaction of the fragments produced. In an effort to model this class of problems, LDEC now includes implementations of Cosserat point theory and cohesive elements. This approach directly simulates the transition from continuum to discontinuum behavior, thereby allowing for dynamic fracture within a combined finite element/discrete element framework. In addition, there are many application involving geologic materials where fluid-structure interaction is important. To facilitate solution of this class of problems a Smooth Particle Hydrodynamics (SPH) capability has been incorporated into LDEC to simulate fully coupled systems involving geologic materials and a saturating fluid. We will present results from a study of a broad range of geomechanical problems that exercise the various components of LDEC in isolation and in tandem.

  17. A discrete simulation of 2-D fluid flow on TERASYS

    SciTech Connect

    Mullins, P.G.; Krolak, P.D.

    1995-12-01

    A discrete simulation of two-dimensional (2-D) fluid flow, on a recently designed novel architecture called TERASYS is presented. The simulation uses a cellular automaton approach, implemented in a new language called data-parallel bit C (dbC). A performance comparison between our implementation on TERASYS and an implementation on the Connection Machine is discussed. We comment briefly on the suitability of the TERASYS system for modeling fluid flow using cellular automata.

  18. Modeling the Dynamics of Interacting Galaxy Pairs - Testing Identikit Using GADGET SPH Simulations

    NASA Astrophysics Data System (ADS)

    Mortazavi, S. Alireza; Lotz, Jennifer; Barnes, Joshua E.

    2015-01-01

    We develop and test an automated technique to model the dynamics of interacting galaxy pairs. We use Identikit (Barnes & Hibbard 2009; Barnes 2011) as a tool for modeling and matching the morphology and kinematics of the interacting pairs of similar-size galaxies. In order to reduce the effect of subjective human interference, we automate the selection of phase-space regions used to match simulations to data, and we explore how selection of these regions affects the random uncertainties of parameters in the best-fit model. In this work, we used an independent set of GADGET SPH simulations as input data, so we determined the systematic bias in the measured encounter parameters based on the known initial conditions of these simulations. We tested both cold gas and young stellar components in the GADGET simulations to explore the effect of choosing HI vs. Hα as the line of sight velocity tracer. We found that we can group the results into tests with good, fair, and poor convergence based on the distribution of parameters of models close enough to the best-fit model. For tests with good and fair convergence, we ruled out large fractions of parameter space and recovered merger stage, eccentricity, viewing angle, and pericentric distance within 2σ of the correct value. All of tests on gaseous component of prograde systems had either good or fair convergence. Retrograde systems and most of tests on young stars had poor convergence and may require constraints from regions other than the tidal tails. In this work we also present WIYN SparsePak IFU data for a few interacting galaxies, and we show the result of applying our method on this data set.

  19. Simulating non-Newtonian flows with the moving particle semi-implicit method with an SPH kernel

    NASA Astrophysics Data System (ADS)

    Xiang, Hao; Chen, Bin

    2015-02-01

    The moving particle semi-implicit (MPS) method and smoothed particle hydrodynamics (SPH) are commonly used mesh-free particle methods for free surface flows. The MPS method has superiority in incompressible flow simulation and simple programing. However, the crude kernel function is not accurate enough for the discretization of the divergence of the shear stress tensor by the particle inconsistency when the MPS method is extended to non-Newtonian flows. This paper presents an improved MPS method with an SPH kernel to simulate non-Newtonian flows. To improve the consistency of the partial derivative, the SPH cubic spline kernel and the Taylor series expansion are combined with the MPS method. This approach is suitable for all non-Newtonian fluids that can be described with τ = μ(|γ|) Δ (where τ is the shear stress tensor, μ is the viscosity, |γ| is the shear rate, and Δ is the strain tensor), e.g., the Casson and Cross fluids. Two examples are simulated including the Newtonian Poiseuille flow and container filling process of the Cross fluid. The results of Poiseuille flow are more accurate than the traditional MPS method, and different filling processes are obtained with good agreement with previous results, which verified the validation of the new algorithm. For the Cross fluid, the jet fracture length can be correlated with We0.28Fr0.78 (We is the Weber number, Fr is the Froude number).

  20. Simulation of 2D Fields of Raindrop Size Distributions

    NASA Astrophysics Data System (ADS)

    Berne, A.; Schleiss, M.; Uijlenhoet, R.

    2008-12-01

    The raindrop size distribution (DSD hereafter) is of primary importance for quantitative applications of weather radar measurements. The radar reflectivity~Z (directly measured by radar) is related to the power backscattered by the ensemble of hydrometeors within the radar sampling volume. However, the rain rate~R (the flux of water to the surface) is the variable of interest for many applications (hydrology, weather forecasting, air traffic for example). Usually, radar reflectivity is converted into rain rate using a power law such as Z=aRb. The coefficients a and b of the Z-R relationship depend on the DSD. The variability of the DSD in space and time has to be taken into account to improve radar rain rate estimates. Therefore, the ability to generate a large number of 2D fields of DSD which are statistically homogeneous provides a very useful simulation framework that nicely complements experimental approaches based on DSD data, in order to investigate radar beam propagation through rain as well as radar retrieval techniques. The proposed approach is based on geostatistics for structural analysis and stochastic simulation. First, the DSD is assumed to follow a gamma distribution. Hence a 2D field of DSDs can be adequately described as a 2D field of a multivariate random function consisting of the three DSD parameters. Such fields are simulated by combining a Gaussian anamorphosis and a multivariate Gaussian random field simulation algorithm. Using the (cross-)variogram models fitted on data guaranties that the spatial structure of the simulated fields is consistent with the observed one. To assess its validity, the proposed method is applied to data collected during intense Mediterranean rainfall. As only time series are available, Taylor's hypothesis is assumed to convert time series in 1D range profile. Moreover, DSD fields are assumed to be isotropic so that the 1D structure can be used to simulate 2D fields. A large number of 2D fields of DSD parameters are

  1. EvoL: the new Padova Tree-SPH parallel code for cosmological simulations. I. Basic code: gravity and hydrodynamics

    NASA Astrophysics Data System (ADS)

    Merlin, E.; Buonomo, U.; Grassi, T.; Piovan, L.; Chiosi, C.

    2010-04-01

    Context. We present the new release of the Padova N-body code for cosmological simulations of galaxy formation and evolution, EvoL. The basic Tree + SPH code is presented and analysed, together with an overview of the software architectures. Aims: EvoL is a flexible parallel Fortran95 code, specifically designed for simulations of cosmological structure formations on cluster, galactic and sub-galactic scales. Methods: EvoL is a fully Lagrangian self-adaptive code, based on the classical oct-tree by Barnes & Hut (1986, Nature, 324, 446) and on the smoothed particle hydrodynamics algorithm (SPH, Lucy 1977, AJ, 82, 1013). It includes special features like adaptive softening lengths with correcting extra-terms, and modern formulations of SPH and artificial viscosity. It is designed to be run in parallel on multiple CPUs to optimise the performance and save computational time. Results: We describe the code in detail, and present the results of a number of standard hydrodynamical tests.

  2. Kinetic AGN feedback effects on cluster cool cores simulated using SPH

    NASA Astrophysics Data System (ADS)

    Barai, Paramita; Murante, Giuseppe; Borgani, Stefano; Gaspari, Massimo; Granato, Gian Luigi; Monaco, Pierluigi; Ragone-Figueroa, Cinthia

    2016-09-01

    We implement novel numerical models of AGN feedback in the SPH code GADGET-3, where the energy from a supermassive black hole (BH) is coupled to the surrounding gas in the kinetic form. Gas particles lying inside a bi-conical volume around the BH are imparted a one-time velocity (10 000 km s-1) increment. We perform hydrodynamical simulations of isolated cluster (total mass 1014 h-1 M⊙), which is initially evolved to form a dense cool core, having central T ≤ 106 K. A BH resides at the cluster centre, and ejects energy. The feedback-driven fast wind undergoes shock with the slower moving gas, which causes the imparted kinetic energy to be thermalized. Bipolar bubble-like outflows form propagating radially outward to a distance of a few 100 kpc. The radial profiles of median gas properties are influenced by BH feedback in the inner regions (r < 20-50 kpc). BH kinetic feedback, with a large value of the feedback efficiency, depletes the inner cool gas and reduces the hot gas content, such that the initial cool core of the cluster is heated up within a time 1.9 Gyr, whereby the core median temperature rises to above 107 K, and the central entropy flattens. Our implementation of BH thermal feedback (using the same efficiency as kinetic), within the star formation model, cannot do this heating, where the cool core remains. The inclusion of cold gas accretion in the simulations produces naturally a duty cycle of the AGN with a periodicity of 100 Myr.

  3. Comparisons Between SPH and Grid-Based Simulations of the Common Envelope Phase

    NASA Astrophysics Data System (ADS)

    Passy, Jean-Claude; Fryer, C. L.; Diehl, S.; De Marco, O.; Mac Low, M.; Herwig, F.; Oishi, J. S.

    2011-01-01

    The common envelope (CE) interaction between a giant star and a lower-mass companion provides a formation channel leading eventually to Type Ia supernovae, sdB stars and bipolar PNe. More broadly, it is an essential ingredient for any population synthesis study including binaries, e.g. cataclysmic variables. Occurring on a short time scale - typically between one and ten years, the CE interaction itself has so far never been observed with certainty but the existence of companions in close orbits around evolved stars, whose precursor's radius was larger than today's orbital separation, vouches for such interaction taking place frequently. Via a detailed study of the energetics and the use of stellar evolution models, we derived in our previous paper the efficiency α of the CE interaction from a carefully selected and statistically analyzed sample of systems thought to be outcomes of a CE interaction. We deduced the initial configuration of those systems using stellar models, and derived a possible inverse dependence of α with the companion to primary mass ratio. Here, we compare these predictions to numerical simulations with two different codes. Enzo is a 3D adaptive mesh refinement grid-based code. For our stellar problem we have modified the way gravity and boundary conditions are treated in this code. The SNSPH code is a 3D hydrodynamics SPH code using tree gravity. The results from both codes for different companion masses and different types of primary stars are consistent with each other. Those results include a resolution study of a 0.88 M⊙ red giant interacting with a 0.9, 0.6 and 0.3 M⊙ white dwarf, respectively. Those systems reach a final separation of 25, 18 and 10 R⊙, respectively. In this contribution, we present and discuss those results and compare them to our predictions. This research was funded by NSF grant 0607111.

  4. Numerical simulation and experimental validation of biofilm in a multi-physics framework using an SPH based method

    NASA Astrophysics Data System (ADS)

    Soleimani, Meisam; Wriggers, Peter; Rath, Henryke; Stiesch, Meike

    2016-06-01

    In this paper, a 3D computational model has been developed to investigate biofilms in a multi-physics framework using smoothed particle hydrodynamics (SPH) based on a continuum approach. Biofilm formation is a complex process in the sense that several physical phenomena are coupled and consequently different time-scales are involved. On one hand, biofilm growth is driven by biological reaction and nutrient diffusion and on the other hand, it is influenced by fluid flow causing biofilm deformation and interface erosion in the context of fluid and deformable solid interaction. The geometrical and numerical complexity arising from these phenomena poses serious complications and challenges in grid-based techniques such as finite element. Here the solution is based on SPH as one of the powerful meshless methods. SPH based computational modeling is quite new in the biological community and the method is uniquely robust in capturing the interface-related processes of biofilm formation such as erosion. The obtained results show a good agreement with experimental and published data which demonstrates that the model is capable of simulating and predicting overall spatial and temporal evolution of biofilm.

  5. Escape fraction of ionizing photons from high-redshift galaxies in cosmological SPH simulations

    NASA Astrophysics Data System (ADS)

    Yajima, Hidenobu; Choi, Jun-Hwan; Nagamine, Kentaro

    2011-03-01

    Combing the three-dimensional radiative transfer (RT) calculation and cosmological smoothed particle hydrodynamics (SPH) simulations, we study the escape fraction of ionizing photons (fesc) of high-redshift galaxies at z= 3-6. Our simulations cover the halo mass range of Mh= 109-1012 M⊙. We post-process several hundred simulated galaxies with the Authentic Radiative Transfer (ART) code to study the halo mass dependence of fesc. In this paper, we restrict ourselves to the transfer of stellar radiation from local stellar population in each dark matter halo. We find that the average fesc steeply decreases as the halo mass increases, with a large scatter for the lower-mass haloes. The low-mass haloes with Mh˜ 109 M⊙ have large values of fesc (with an average of ˜0.4), whereas the massive haloes with Mh˜ 1011 M⊙ show small values of fesc (with an average of ˜0.07). This is because in our simulations, the massive haloes show more clumpy structure in gas distribution, and the star-forming regions are embedded inside these clumps, making it more difficult for the ionizing photons to escape. On the other hand, in low-mass haloes, there are often conical regions of highly ionized gas due to the shifted location of young star clusters from the centre of dark matter halo, which allows the ionizing photons to escape more easily than in the high-mass haloes. By counting the number of escaped ionizing photons, we show that the star-forming galaxies can ionize the intergalactic medium at z= 3-6. The main contributor to the ionizing photons is the haloes with Mh≲ 1010 M⊙ owing to their high fesc. The large dispersion in fesc suggests that there may be various sizes of H II bubbles around the haloes even with the same mass in the early stages of reionization. We also examine the effect of UV background radiation field on fesc using simple, four different treatments of UV background.

  6. Numerical simulation of rock cutting using 2D AUTODYN

    NASA Astrophysics Data System (ADS)

    Woldemichael, D. E.; Rani, A. M. Abdul; Lemma, T. A.; Altaf, K.

    2015-12-01

    In a drilling process for oil and gas exploration, understanding of the interaction between the cutting tool and the rock is important for optimization of the drilling process using polycrystalline diamond compact (PDC) cutters. In this study the finite element method in ANSYS AUTODYN-2D is used to simulate the dynamics of cutter rock interaction, rock failure, and fragmentation. A two-dimensional single PDC cutter and rock model were used to simulate the orthogonal cutting process and to investigate the effect of different parameters such as depth of cut, and back rake angle on two types of rocks (sandstone and limestone). In the simulation, the cutting tool was dragged against stationary rock at predetermined linear velocity and the depth of cut (1,2, and 3 mm) and the back rake angles(-10°, 0°, and +10°) were varied. The simulation result shows that the +10° back rake angle results in higher rate of penetration (ROP). Increasing depth of cut leads to higher ROP at the cost of higher cutting force.

  7. SPH Simulations of Volatiles Loss from Icy Satellites During a Late Heavy Bombardment

    NASA Astrophysics Data System (ADS)

    Movshovitz, N.; Nimmo, F.; Korycansky, D.; Asphaug, E. I.; Owen, J. M.

    2013-12-01

    in the size range of interest here requires high resolution hydrodynamical simulations. We use a sophisticated, SPH based code developed by one of the authors [9] and run on hundreds of nodes of the UCSC astrophysical computer cluster to achieve the desired resolution. [1] Nimmo, F., & Korycansky, D. G. (2012), Icarus 219(1), 508-510. [2] Tsiganis, K., Gomes, R., Morbidelli, A., Levison, H.F., 2005, Nature 435, 459-461. [3] Gomes, R., Levison, H.F., Tsiganis, K., Morbidelli, A., 2005, Nature 435, 466-469. [4] Dones, L., & Levison, H. F. (2013), 44th Lunar and Planetary Science Conference ( 2013 ). [5] Zahnle, K.J., Schenk, P., Levison, H.F., Dones, L., 2003, Icarus 163, 263-289. [6] Kraus, R. G., Senft, L. E., & Stewart, S. T. (2011), Icarus, 214(2), 724-738. [7] Dwyer, C. A., Nimmo, F., Ogihara, M., & Ida, S. (2013), Icarus, 225(1), 390-402. [8] Asphaug, E., & Reufer, A. (2013), Icarus, 223(1), 544-565. [9] Owen, J. M., Villumsen, J. V., Shapiro, P. R., & Martel, H. (1998), ApJ Supp, 116, 155

  8. Multiscale simulation of 2D elastic wave propagation

    NASA Astrophysics Data System (ADS)

    Zhang, Wensheng; Zheng, Hui

    2016-06-01

    In this paper, we develop the multiscale method for simulation of elastic wave propagation. Based on the first-order velocity-stress hyperbolic form of 2D elastic wave equation, the particle velocities are solved first ona coarse grid by the finite volume method. Then the stress tensor is solved by using the multiscale basis functions which can represent the fine-scale variation of the wavefield on the coarse grid. The basis functions are computed by solving a local problem with the finite element method. The theoretical formulae and description of the multiscale method for elastic wave equation are given in more detail. The numerical computations for an inhomogeneous model with random scatter are completed. The results show the effectiveness of the multiscale method.

  9. 3D radiative transfer in colliding wind binaries: Application of the SimpleX algorithm to 3D SPH simulations

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Clementel, Nicola; Kruip, Chael; Icke, Vincent; Gull, Theodore

    2014-09-01

    We present the first results of full 3D radiative transfer simulations of the colliding stellar winds in a massive binary system. We accomplish this by applying the SIMPLEX algorithm for 3D radiative transfer on an unstructured Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the colliding winds in the binary system η Carinae. We use SIMPLEX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We show how the SIMPLEX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in η Car's extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SIMPLEX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the η Car system, such as the primary's mass-loss rate and the companion's temperature and luminosity. While we initially focus specifically on the η Car binary, the numerical methods employed can be applied to numerous other colliding wind (WR140, WR137, WR19) and dusty 'pinwheel' (WR104, WR98a) binary systems. One of the biggest remaining mysteries is how dust can form and survive in such systems that contain a hot, luminous O star. Coupled with 3D hydrodynamical simulations, SIMPLEX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.

  10. Quantum Simulation with 2D Arrays of Trapped Ions

    NASA Astrophysics Data System (ADS)

    Richerme, Philip

    2016-05-01

    The computational difficulty of solving fully quantum many-body spin problems is a significant obstacle to understanding the behavior of strongly correlated quantum matter. This work proposes the design and construction of a 2D quantum spin simulator to investigate the physics of frustrated materials, highly entangled states, mechanisms potentially underpinning high-temperature superconductivity, and other topics inaccessible to current 1D systems. The effective quantum spins will be encoded within the well-isolated electronic levels of trapped ions, confined in a two-dimensional planar geometry, and made to interact using phonon-mediated optical dipole forces. The system will be scalable to 100+ quantum particles, far beyond the realm of classical intractability, while maintaining individual-ion control, long quantum coherence times, and site-resolved projective spin measurements. Once constructed, the two-dimensional quantum simulator will implement a broad range of spin models on a variety of reconfigurable lattices and characterize their behavior through measurements of spin-spin correlations and entanglement. This versatile tool will serve as an important experimental resource for exploring difficult quantum many-body problems in a regime where classical methods fail.

  11. Towards Understanding Simulated Feedback in AMR and SPH Codes and the Multi-Phase Nature of the ISM

    NASA Astrophysics Data System (ADS)

    Mitchell, N. L.; Bower, R. G.; Theuns, T.; Vorobyov, E. I.

    2012-07-01

    Feedback from supernova is believed to be a key ingredient for regulating star formation within galaxies, however modelling it self-consistently is prohibitively expensive. Even superbubbles which are formed from multiple supernova occuring in close proximity, are only a few hundred parsecs across — tiny compared to the sizes of many galaxies. Thus any simulation which aims to study the large scale properties of galaxies, groups and clusters cannot currently resolve the ISM into its true multi-phase nature. In order to overcome this limitation, many cosmological simulations which are run in both AMR and SPH codes, adopt polytropic equations of state. These approximate the physics of the ISM below those scales which can be resolved where the ISM splits to become multi-phase. However we show that when identical sub-grid physical recipes for cooling, star formation and feedback are included into both SPH and AMR codes, they do not necessarily yield the same results. Instead, we find that energy is dissipated far more readily in an AMR code, allowing supernova driven winds to stall. This prevents supernova feedback in AMR simulations from removing sufficient gas to adaquately regulate the star formation rate. Whereas in SPH codes the winds can remove more gas, with wind particles able to stream more freely out of the galaxy. Determining which of these codes provides a more physically correct description is extremely difficult, however it clearly highlights the need for a more robust model for the ISM. For a better understanding of the means by which energy from feedback is redistributed within the ISM, we present our new multi-phase chemodynamic model in the FLASH AMR code. We seperate the ISM into a hot tenuous gas phase and an almost collisionless compact molecular cloud component. Both phases are modelled on the adaptive mesh, the hot gas being modelled by using the standard Euler equations for compressible fluid dynamics whilst the collisionless component is

  12. A 2D simulation model for urban flood management

    NASA Astrophysics Data System (ADS)

    Price, Roland; van der Wielen, Jonathan; Velickov, Slavco; Galvao, Diogo

    2014-05-01

    The European Floods Directive, which came into force on 26 November 2007, requires member states to assess all their water courses and coast lines for risk of flooding, to map flood extents and assets and humans at risk, and to take adequate and coordinated measures to reduce the flood risk in consultation with the public. Flood Risk Management Plans are to be in place by 2015. There are a number of reasons for the promotion of this Directive, not least because there has been much urban and other infrastructural development in flood plains, which puts many at risk of flooding along with vital societal assets. In addition there is growing awareness that the changing climate appears to be inducing more frequent extremes of rainfall with a consequent increases in the frequency of flooding. Thirdly, the growing urban populations in Europe, and especially in the developing countries, means that more people are being put at risk from a greater frequency of urban flooding in particular. There are urgent needs therefore to assess flood risk accurately and consistently, to reduce this risk where it is important to do so or where the benefit is greater than the damage cost, to improve flood forecasting and warning, to provide where necessary (and possible) flood insurance cover, and to involve all stakeholders in decision making affecting flood protection and flood risk management plans. Key data for assessing risk are water levels achieved or forecasted during a flood. Such levels should of course be monitored, but they also need to be predicted, whether for design or simulation. A 2D simulation model (PriceXD) solving the shallow water wave equations is presented specifically for determining flood risk, assessing flood defense schemes and generating flood forecasts and warnings. The simulation model is required to have a number of important properties: -Solve the full shallow water wave equations using a range of possible solutions; -Automatically adjust the time step and

  13. The role of the artificial conductivity in SPH simulations of galaxy clusters: effects on the ICM properties

    NASA Astrophysics Data System (ADS)

    Biffi, V.; Valdarnini, R.

    2015-01-01

    We study the thermal structure of the intracluster medium (ICM) in a set of cosmological hydrodynamical cluster simulations performed with a smoothed particle hydrodynamics (SPH) numerical scheme employing an artificial conductivity (AC) term. We explore the effects of this term on the ICM temperature and entropy profiles, thermal distribution, velocity field and expected X-ray emission. We find that in adiabatic runs, the artificial conductivity favours (i) the formation of an entropy core, raising and flattening the central entropy profiles, in better agreement with findings from Eulerian codes; and (ii) a systematic reduction of the cold gas component. In fact, the cluster large-scale structure and dynamical state are preserved across different runs, but the improved gas mixing enabled by the AC term strongly increases the stripping rate of gas from the cold clumps moving through the ICM. This in turn reduces the production of turbulence generated by the instabilities which develop because of the interaction between clumps and ambient ICM. We then find that turbulent motions, enhanced by the time-dependent artificial viscosity scheme we use, are rather damped by the AC term. The ICM synthetic X-ray emission substantially mirrors the changes in its thermodynamical structure, stressing the robustness of the AC impact. All these effects are softened by the introduction of radiative cooling but still present, especially a partial suppression of cold gas. Therefore, not only the physics accounted for, but also the numerical approach itself can have an impact in shaping the ICM thermodynamical structure and ultimately in the use of SPH cluster simulations for cosmological studies.

  14. A 2D simulation model for urban flood management

    NASA Astrophysics Data System (ADS)

    Price, Roland; van der Wielen, Jonathan; Velickov, Slavco; Galvao, Diogo

    2014-05-01

    The European Floods Directive, which came into force on 26 November 2007, requires member states to assess all their water courses and coast lines for risk of flooding, to map flood extents and assets and humans at risk, and to take adequate and coordinated measures to reduce the flood risk in consultation with the public. Flood Risk Management Plans are to be in place by 2015. There are a number of reasons for the promotion of this Directive, not least because there has been much urban and other infrastructural development in flood plains, which puts many at risk of flooding along with vital societal assets. In addition there is growing awareness that the changing climate appears to be inducing more frequent extremes of rainfall with a consequent increases in the frequency of flooding. Thirdly, the growing urban populations in Europe, and especially in the developing countries, means that more people are being put at risk from a greater frequency of urban flooding in particular. There are urgent needs therefore to assess flood risk accurately and consistently, to reduce this risk where it is important to do so or where the benefit is greater than the damage cost, to improve flood forecasting and warning, to provide where necessary (and possible) flood insurance cover, and to involve all stakeholders in decision making affecting flood protection and flood risk management plans. Key data for assessing risk are water levels achieved or forecasted during a flood. Such levels should of course be monitored, but they also need to be predicted, whether for design or simulation. A 2D simulation model (PriceXD) solving the shallow water wave equations is presented specifically for determining flood risk, assessing flood defense schemes and generating flood forecasts and warnings. The simulation model is required to have a number of important properties: -Solve the full shallow water wave equations using a range of possible solutions; -Automatically adjust the time step and

  15. Probing the High Redshift IGM: SPH+P{(3}) MG Simulations of the Lyman-alpha Forest

    NASA Astrophysics Data System (ADS)

    Wadsley, J.; Bond, J. R.

    1996-12-01

    Our understanding of the Lyman-alpha forest has received a great boost with the advent of the Keck Telescope and large 3D hydrodynamical simulations. We simulate the high redshift universe using the SPH technique with a P{(3}) MG (Particle-Particle Particle-MultiGrid) non-periodic gravity solver. We employ a high resolution (1 kpc) inner volume, essential for capturing the complex gas physics, larger medium and low resolution volumes surrounding it, essential for correct larger scale tidal fields, and a self-consistently applied, uniform tidal field to model the influence of ultra long waves. Such care is needed because the power per decade in the density fluctuations falls off very slowly in the dwarf galaxy regime of relevance to Lyman alpha clouds. The oft-used periodic boundary condition approach to simulations is ill-suited to proper treatment of the tides. We use constrained field realizations to probe a selection of environments, including voids, quiescent regions, proto-dwarf galaxies and regions experiencing strong tides, such as large galaxy halos and galaxy-galaxy filamentary bridges. We statistically combine our simulations to provide a more comprehensive sample of the universe, including ``rare event'' regions which are difficult to obtain in unrestricted FFT-based approaches. We fit Voigt profiles to the Lyman alpha spectra computed from our simulations direct comparison with the data, e.g., the column density distribution, line widths, temperatures, multiple line-of-sight correlations and the HI (and HeII) flux decrements. We demonstrate the importance of (1) the photoionizing UV flux level and history, (2) tidal environment and (3) differing cosmologies, including CDM and CDM+Lambda. With galaxy-scale rms fluctuations ~ 1 at z=3 and a UV choice motivated by proximity effect observations, the simulations give results in excellent agreement with the data.

  16. Resolved granular debris-flow simulations with a coupled SPH-DCDEM model

    NASA Astrophysics Data System (ADS)

    Birjukovs Canelas, Ricardo; Domínguez, José M.; Crespo, Alejandro J. C.; Gómez-Gesteira, Moncho; Ferreira, Rui M. L.

    2016-04-01

    Debris flows represent some of the most relevant phenomena in geomorphological events. Due to the potential destructiveness of such flows, they are the target of a vast amount of research (Takahashi, 2007 and references therein). A complete description of the internal processes of a debris-flow is however still an elusive achievement, explained by the difficulty of accurately measuring important quantities in these flows and developing a comprehensive, generalized theoretical framework capable of describing them. This work addresses the need for a numerical model applicable to granular-fluid mixtures featuring high spatial and temporal resolution, thus capable of resolving the motion of individual particles, including all interparticle contacts. This corresponds to a brute-force approach: by applying simple interaction laws at local scales the macro-scale properties of the flow should be recovered by upscaling. This methodology effectively bypasses the complexity of modelling the intermediate scales by resolving them directly. The only caveat is the need of high performance computing, a demanding but engaging research challenge. The DualSPHysics meshless numerical implementation, based on Smoothed Particle Hydrodynamics (SPH), is expanded with a Distributed Contact Discrete Element Method (DCDEM) in order to explicitly solve the fluid and the solid phase. The model numerically solves the Navier-Stokes and continuity equations for the liquid phase and Newton's motion equations for solid bodies. The interactions between solids are modelled with classical DEM approaches (Kruggel-Emden et al, 2007). Among other validation tests, an experimental set-up for stony debris flows in a slit check dam is reproduced numerically, where solid material is introduced trough a hopper assuring a constant solid discharge for the considered time interval. With each sediment particle undergoing tens of possible contacts, several thousand time-evolving contacts are efficiently treated

  17. Comparison of ALE and SPH Simulations of Vertical Drop Tests of a Composite Fuselage Section into Water

    NASA Technical Reports Server (NTRS)

    Jackson, Karen E.; Fuchs, Yvonne T.

    2008-01-01

    Simulation of multi-terrain impact has been identified as an important research area for improved prediction of rotorcraft crashworthiness within the NASA Subsonic Rotary Wing Aeronautics Program on Rotorcraft Crashworthiness. As part of this effort, two vertical drop tests were conducted of a 5-ft-diameter composite fuselage section into water. For the first test, the fuselage section was impacted in a baseline configuration without energy absorbers. For the second test, the fuselage section was retrofitted with a composite honeycomb energy absorber. Both tests were conducted at a nominal velocity of 25-ft/s. A detailed finite element model was developed to represent each test article and water impact was simulated using both Arbitrary Lagrangian Eulerian (ALE) and Smooth Particle Hydrodynamics (SPH) approaches in LS-DYNA, a nonlinear, explicit transient dynamic finite element code. Analytical predictions were correlated with experimental data for both test configurations. In addition, studies were performed to evaluate the influence of mesh density on test-analysis correlation.

  18. Matching the Dark Matter Profiles of dSph Galaxies with Those of Simulated Satellites: A Two-parameter Comparison

    NASA Astrophysics Data System (ADS)

    Breddels, Maarten A.; Vera-Ciro, Carlos; Helmi, Amina

    2015-12-01

    We compare the dark matter halos’ structural parameters derived for four Milky Way dwarf spheroidal galaxies to those of subhalos found in cosmological N-body simulations. We confirm that estimates of the mass at a single fixed radius are fully consistent with the observations. However, when a second structural parameter such as the logarithmic slope of the dark halo density profile measured close to the half-light radius is included in the comparison, we find little to no overlap between the satellites and the subhalos. Typically the right mass subhalos have steeper profiles at these radii than measurements of the dSph suggest. Using energy arguments we explore if it is possible to solve this discrepancy by invoking baryonic effects. Assuming that feedback from supernovae (SNe) can lead to a reshaping of the halos, we compute the required efficiency and find entirely plausible values for a significant fraction of the subhalos and even as low as 0.1%. This implies that care must be taken not to exaggerate the effect of SNe feedback as this could make the halos too shallow. These results could be used to calibrate and possibly constrain feedback recipes in hydrodynamical simulations.

  19. Atmospheric Outflows from Hot Jupiters: 2D MHD Simulations

    NASA Astrophysics Data System (ADS)

    Uribe, A.; Matsakos, T.; Konigl, A.

    2015-01-01

    Recent observations of stellar hydrogen Ly-α line absorption during transits of some hot Jupiter exoplanets suggest the presence of a dense, fast wind that is blowing from planetary atmosphere tep{2003Natur.422..143V,2007ApJ...671L..61B}. Modeling efforts include 1D hydrodynamic models tep{2009ApJ...693...23M,2004Icar..170..167Y,2007P&SS...55.1426G} and 2D isothermal magnetized wind models tep{2014arXiv1404.5817T}, among others. In this work, we model the 2D structure of the irradiated upper atmosphere of a hot Jupiter planet and its interaction with the planetary magnetic field. We calculate self consistently the heating by stellar UV radiation and the cooling of the atmosphere by Ly-α emission. We solve for the ionization structure assuming a 100% hydrogen atmosphere, accounting for the radiative ionization, recombination and advection of the gas. We show the effect of stellar tides and planetary magnetic field on the planet outflow and calculate the Ly-α transmission spectra of the resulting atmosphere.

  20. Simulations of flow mode distributions on rough fracture surfaces using a parallelized Smoothed Particle Hydrodynamics (SPH) model

    NASA Astrophysics Data System (ADS)

    Kordilla, J.; Shigorina, E.; Tartakovsky, A. M.; Pan, W.; Geyer, T.

    2015-12-01

    Under idealized conditions (smooth surfaces, linear relationship between Bond number and Capillary number of droplets) steady-state flow modes on fracture surfaces have been shown to develop from sliding droplets to rivulets and finally (wavy) film flow, depending on the specified flux. In a recent study we demonstrated the effect of surface roughness on droplet flow in unsaturated wide aperture fractures, however, its effect on other prevailing flow modes is still an open question. The objective of this work is to investigate the formation of complex flow modes on fracture surfaces employing an efficient three-dimensional parallelized SPH model. The model is able to simulate highly intermittent, gravity-driven free-surface flows under dynamic wetting conditions. The effect of surface tension is included via efficient pairwise interaction forces. We validate the model using various analytical and semi-analytical relationships for droplet and complex flow dynamics. To investigate the effect of surface roughness on flow dynamics we construct surfaces with a self-affine fractal geometry and roughness characterized by the Hurst exponent. We demonstrate the effect of surface roughness (on macroscopic scales this can be understood as a tortuosity) on the steady-state distribution of flow modes. Furthermore we show the influence of a wide range of natural wetting conditions (defined by static contact angles) on the final distribution of surface coverage, which is of high importance for matrix-fracture interaction processes.

  1. Modelling the RXTE light curve of η Carinae from a 3D SPH simulation of its binary wind collision

    NASA Astrophysics Data System (ADS)

    Okazaki, A. T.; Owocki, S. P.; Russell, C. M. P.; Corcoran, M. F.

    2008-07-01

    The very massive star system η Carinae exhibits regular 5.54 yr (2024 d) period disruptive events in wavebands ranging from the radio to X-ray. There is a growing consensus that these events likely stem from periastron passage of an (as yet) unseen companion in a highly eccentric (e ~ 0.9) orbit. This Letter presents 3D smoothed particle hydrodynamics (SPH) simulations of the orbital variation of the binary wind-wind collision, and applies these to modelling the X-ray light curve observed by the Rossi X-ray Timing Explorer (RXTE). By providing a global 3D model of the phase variation of the density of the interacting winds, the simulations allow computation of the associated variation in X-ray absorption, presumed here to originate from near the apex of the wind-wind interaction cone. We find that the observed RXTE light curve can be readily fitted if the observer's line of sight is within this cone along the general direction of apastron. Specifically, the data are well fitted by an assumed inclination i = 45° for the orbit's polar axis, which is thus consistent with orbital angular momentum being along the inferred polar axis of the Homunculus nebula. The fits also constrain the position angle φ that an orbital-plane projection makes with the apastron side of the semimajor axis, strongly excluding positions φ < 9° along or to the retrograde side of the axis, with the best-fitting position given by φ = 27°. Overall the results demonstrate the utility of a fully 3D dynamical model for constraining the geometric and physical properties of this complex colliding wind binary system.

  2. COYOTE: A computer program for 2-D reactive flow simulations

    SciTech Connect

    Cloutman, L.D.

    1990-04-01

    We describe the numerical algorithm used in the COYOTE two- dimensional, transient, Eulerian hydrodynamics program for reactive flows. The program has a variety of options that provide capabilities for a wide range of applications, and it is designed to be robust and relatively easy to use while maintaining adequate accuracy and efficiency to solve realistic problems. It is based on the ICE method, and it includes a general species and chemical reaction network for simulating reactive flows. It also includes swirl, turbulence transport models, and a nonuniform mesh capability. We describe several applications of the program. 33 refs., 4 figs.

  3. 2D numerical simulation of the resistive reconnection layer

    SciTech Connect

    D. A. Uzdensky; R. M. Kulsrud

    2000-07-21

    In this paper the authors present a two-dimensional numerical simulation of a reconnection current layer in incompressible resistive magnetohydrodynamics with uniform resistivity in the limit of very large Lundquist numbers. They use realistic boundary conditions derived consistently from the outside magnetic field, and they also take into account the effect of the backpressure from flow into the separatrix region. They find that within a few Alfven times the system reaches a steady state consistent with the Sweet-Parker model, even if the initial state is Petschek-like.

  4. 2D Numerical Simulation of the Resistive Reconnection Layer

    SciTech Connect

    Kulsrud, R.M.; Uzdensky, D.A.

    1999-03-01

    In this paper we present a two-dimensional numerical simulation of a reconnection current layer in incompressible resistive magnetohydrodynamics with uniform resistivity in the limit of very large Lundquist numbers. We use realistic boundary conditions derived consistently from the outside magnetic field, and we also take into account the effect of the back pressure from flow into the separatrix region. We find that within a few Alfvén times the system reaches a steady state consistent with the Sweet-Parker model, even if the initial state is Petschek-like.

  5. Simulation of subgrid orographic precipitation with an embedded 2-D cloud-resolving model

    NASA Astrophysics Data System (ADS)

    Jung, Joon-Hee; Arakawa, Akio

    2016-03-01

    By explicitly resolving cloud-scale processes with embedded two-dimensional (2-D) cloud-resolving models (CRMs), superparameterized global atmospheric models have successfully simulated various atmospheric events over a wide range of time scales. Up to now, however, such models have not included the effects of topography on the CRM grid scale. We have used both 3-D and 2-D CRMs to simulate the effects of topography with prescribed "large-scale" winds. The 3-D CRM is used as a benchmark. The results show that the mean precipitation can be simulated reasonably well by using a 2-D representation of topography as long as the statistics of the topography such as the mean and standard deviation are closely represented. It is also shown that the use of a set of two perpendicular 2-D grids can significantly reduce the error due to a 2-D representation of topography.

  6. A simple way to improve AGN feedback prescription in SPH simulations

    NASA Astrophysics Data System (ADS)

    Zubovas, Kastytis; Bourne, Martin A.; Nayakshin, Sergei

    2016-03-01

    Active galactic nuclei (AGN) feedback is an important ingredient in galaxy evolution, however its treatment in numerical simulations is necessarily approximate, requiring subgrid prescriptions due to the dynamical range involved in the calculations. We present a suite of smoothed particle hydrodynamics simulations designed to showcase the importance of the choice of a particular subgrid prescription for AGN feedback. We concentrate on two approaches to treating wide-angle AGN outflows: thermal feedback, where thermal and kinetic energy is injected into the gas surrounding the supermassive black hole (SMBH) particle, and virtual particle feedback, where energy is carried by tracer particles radially away from the AGN. We show that the latter model produces a far more complex structure around the SMBH, which we argue is a more physically correct outcome. We suggest a simple improvement to the thermal feedback model - injecting the energy into a cone, rather than spherically symmetrically - and show that this markedly improves the agreement between the two prescriptions, without requiring any noticeable increase in the computational cost of the simulation.

  7. Size-frequency distributions of fragments from SPH/ N-body simulations of asteroid impacts: Comparison with observed asteroid families

    NASA Astrophysics Data System (ADS)

    Durda, Daniel D.; Bottke, William F.; Nesvorný, David; Enke, Brian L.; Merline, William J.; Asphaug, Erik; Richardson, Derek C.

    2007-02-01

    We investigate the morphology of size-frequency distributions (SFDs) resulting from impacts into 100-km-diameter parent asteroids, represented by a suite of 161 SPH/N-body simulations conducted to study asteroid satellite formation [Durda, D.D., Bottke, W.F., Enke, B.L., Merline, W.J., Asphaug, E., Richardson, D.C., Leinhardt, Z.M., 2004. Icarus 170, 243-257]. The spherical basalt projectiles range in diameter from 10 to 46 km (in equally spaced mass increments in logarithmic space, covering six discrete sizes), impact speeds range from 2.5 to 7 km/s (generally in 1 km/s increments), and impact angles range from 15° to 75° (nearly head-on to very oblique) in 15° increments. These modeled SFD morphologies match very well the observed SFDs of many known asteroid families. We use these modeled SFDs to scale to targets both larger and smaller than 100 km in order to gain insights into the circumstances of the impacts that formed these families. Some discrepancies occur for families with parent bodies smaller than a few tens of kilometers in diameter (e.g., 832 Karin), however, so due caution should be used in applying our results to such small families. We find that ˜20 observed main-belt asteroid families are produced by the catastrophic disruption of D >100 km parent bodies. Using these data as constraints, collisional modeling work [Bottke Jr., W.F., Durda, D.D., Nesvorný, D., Jedicke, R., Morbidelli, A., Vokrouhlický, D., Levison, H.F., 2005b. Icarus 179, 63-94] suggests that the threshold specific energy, QD∗, needed to eject 50% of the target body's mass is very close to that predicted by Benz and Asphaug [Benz, W., Asphaug, E., 1999. Icarus 142, 5-20].

  8. Propagation of gravity waves through an SPH scheme with numerical diffusive terms

    NASA Astrophysics Data System (ADS)

    Antuono, M.; Colagrossi, A.; Marrone, S.; Lugni, C.

    2011-04-01

    Basing on the work by Antuono et al. (2010) [1], an SPH model with numerical diffusive terms (here denoted δ-SPH) is combined with an enhanced treatment of solid boundaries to simulate 2D gravity waves generated by a wave maker and propagating into a basin. Both regular and transient wave systems are considered. In the former, a large number of simulations is performed for different wave steepness and height-to-depth ratio and the results are compared with a BEM Mixed-Eulerian-Lagrangian solver (here denoted BEM-MEL solver). In the latter, the δ-SPH model has been compared with both the experimental measurements available in the literature and with the BEM-MEL solver, at least until the breaking event occurs. The results show a satisfactory agreement between the δ-SPH model, the BEM-MEL solver and the experiments. Finally, the influence of the weakly-compressibility assumption on the SPH results is inspected and a convergence analysis is provided in order to identify the minimal spatial resolution needed to get an accurate representation of gravity waves.

  9. Towards Bayesian Machine Learning for Estimating Parameters of Accretion Disk Models for SPH Simulations

    NASA Astrophysics Data System (ADS)

    Goel, Amit; Montgomery, Michele; Wiegand, Paul

    2016-01-01

    Accretion disks are ubiquitous in Active Galactic Nuclei, in protostellar systems forming protoplanets, and in close binary star systems such as X-ray binaries, Cataclysmic Variables, and Algols, for example. Observations such as disk tilt are found in all of these different accreting system types, suggesting a common physics must be present. To understand the common connections between these different system types, which can help us understand their unique evolutions, we need to better understand the physics of accretion. For example, viscosity is typically a constant value in the disk of a system that is in a specific state such as a quiescent state. However, viscosity can't be constant throughout the disk, especially at the boundaries. To learn more about viscosity and other common parameters in these disk, we use Bayesian Inference and Markov Chain Monte Carlo techniques to make predictions of events to come in the numerical simulations of these accreting disks. In this work, we present our techniques and initial findings.

  10. 2-D simulation of a waveguide free electron laser having a helical undulator

    SciTech Connect

    Kim, S.K.; Lee, B.C.; Jeong, Y.U.

    1995-12-31

    We have developed a 2-D simulation code for the calculation of output power from an FEL oscillator having a helical undulator and a cylindrical waveguide. In the simulation, the current and the energy of the electron beam is 2 A and 400 keV, respectively. The parameters of the permanent-magnet helical undulator are : period = 32 mm, number of periods = 20, magnetic field = 1.3 kG. The gain per pass is 10 and the output power is calculated to be higher than 10 kW The results of the 2-D simulation are compared with those of 1-D simulation.

  11. Comparing the size-frequency distributions of asteroid families to those produced by SPH/N-body impact simulations

    NASA Astrophysics Data System (ADS)

    Durda, D. D.; Bottke, W. F.; Nesvorný, D.; Asphaug, E.; Richardson, D. C.

    2004-11-01

    We investigate the morphology of size-frequency distributions (SFDs) resulting from impacts into 100-km diameter parent asteroids, represented by a suite of 160 SPH/N-body simulations conducted to study asteroid satellite formation (Durda et al. 2004; Icarus 170, 243-257). The spherical basalt projectiles range in diameter from 10 to 46 km (in equally-spaced mass increments in logarithmic space, covering six discrete sizes), impact speeds range from 2.5 to 7 km/s (generally in 1 km/s increments), and impact angles range from 15o to 75o (nearly head-on to very oblique) in 15o increments. For a given impact speed, the shape of the SFD tends to be more ``concave" for the smallest impactors (cratering events) and more ``convex" for the largest impactors (supercatastrophic disruption). At the transition point where ``concave" cratering SFDs begin to transform into more linear power law SFDs, the largest remnant has a diameter of ˜ 20 km. That transition occurs at smaller impactor sizes for greater impactor speeds and at greater impactor sizes for larger impactor angles. Impacts that maximize the number of similar-size largest remnants (at ˜ 20 km) occur at impact speeds of 6-7 km/s with 25-34 km diameter impactors; larger impactors at higher speeds are required to achieve the same results for oblique impacts as for smaller impactors at lower speeds impacting more nearly head-on. The SFDs with the very shallowest slopes overall derive from impacts at about 4-6 km/s with 25-34 km diameter impactors. These modeled SFD morphologies match very well the observed SFDs of actual asteroid families. We find that there are ˜ 20 families produced by catastrophic breakups in the main belt from D > 100 km parent bodies. This suggests that the threshold specific energy, Q*D, is very close to that predicted by Benz and Asphaug (1999; Icarus 142, 5-20).

  12. 3D Radiative Transfer in Eta Carinae: Application of the SimpleX Algorithm to 3D SPH Simulations of Binary Colliding Winds

    NASA Technical Reports Server (NTRS)

    Clementel, N.; Madura, T. I.; Kruip, C. J. H.; Icke, V.; Gull, T. R.

    2014-01-01

    Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions and evolution, and stellar wind-wind collisions. Recent three-dimensional (3D) simulations set the stage for understanding the highly complex 3D flows in Eta Car. Observations of different broad high- and low-ionization forbidden emission lines provide an excellent tool to constrain the orientation of the system, the primary's mass-loss rate, and the ionizing flux of the hot secondary. In this work we present the first steps towards generating synthetic observations to compare with available and future HST/STIS data. We present initial results from full 3D radiative transfer simulations of the interacting winds in Eta Car. We use the SimpleX algorithm to post-process the output from 3D SPH simulations and obtain the ionization fractions of hydrogen and helium assuming three different mass-loss rates for the primary star. The resultant ionization maps of both species constrain the regions where the observed forbidden emission lines can form. Including collisional ionization is necessary to achieve a better description of the ionization states, especially in the areas shielded from the secondary's radiation. We find that reducing the primary's mass-loss rate increases the volume of ionized gas, creating larger areas where the forbidden emission lines can form. We conclude that post processing 3D SPH data with SimpleX is a viable tool to create ionization maps for Eta Car.

  13. 3D Radiative Transfer in Eta Carinae: Application of the SimpleX Algorithm to 3D SPH Simulations of Binary Colliding Winds

    NASA Technical Reports Server (NTRS)

    Clementel, N.; Madura, T. I.; Kruip, C.J.H.; Icke, V.; Gull, T. R.

    2014-01-01

    Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions and evolution, and stellar wind-wind collisions. Recent three-dimensional (3D) simulations set the stage for understanding the highly complex 3D flows in eta Car. Observations of different broad high- and low-ionization forbidden emission lines provide an excellent tool to constrain the orientation of the system, the primary's mass-loss rate, and the ionizing flux of the hot secondary. In this work we present the first steps towards generating synthetic observations to compare with available and future HST/STIS data. We present initial results from full 3D radiative transfer simulations of the interacting winds in eta Car.We use the SimpleX algorithm to post-process the output from 3D SPH simulations and obtain the ionization fractions of hydrogen and helium assuming three different mass-loss rates for the primary star. The resultant ionization maps of both species constrain the regions where the observed forbidden emission lines can form. Including collisional ionization is necessary to achieve a better description of the ionization states, especially in the areas shielded from the secondary's radiation. We find that reducing the primary's mass-loss rate increases the volume of ionized gas, creating larger areas where the forbidden emission lines can form.We conclude that post processing 3D SPH data with SimpleX is a viable tool to create ionization maps for eta Car.

  14. The simulation of 3D microcalcification clusters in 2D digital mammography and breast tomosynthesis

    SciTech Connect

    Shaheen, Eman; Van Ongeval, Chantal; Zanca, Federica; Cockmartin, Lesley; Marshall, Nicholas; Jacobs, Jurgen; Young, Kenneth C.; Dance, David R.; Bosmans, Hilde

    2011-12-15

    Purpose: This work proposes a new method of building 3D models of microcalcification clusters and describes the validation of their realistic appearance when simulated into 2D digital mammograms and into breast tomosynthesis images. Methods: A micro-CT unit was used to scan 23 breast biopsy specimens of microcalcification clusters with malignant and benign characteristics and their 3D reconstructed datasets were segmented to obtain 3D models of microcalcification clusters. These models were then adjusted for the x-ray spectrum used and for the system resolution and simulated into 2D projection images to obtain mammograms after image processing and into tomographic sequences of projection images, which were then reconstructed to form 3D tomosynthesis datasets. Six radiologists were asked to distinguish between 40 real and 40 simulated clusters of microcalcifications in two separate studies on 2D mammography and tomosynthesis datasets. Receiver operating characteristic (ROC) analysis was used to test the ability of each observer to distinguish between simulated and real microcalcification clusters. The kappa statistic was applied to assess how often the individual simulated and real microcalcification clusters had received similar scores (''agreement'') on their realistic appearance in both modalities. This analysis was performed for all readers and for the real and the simulated group of microcalcification clusters separately. ''Poor'' agreement would reflect radiologists' confusion between simulated and real clusters, i.e., lesions not systematically evaluated in both modalities as either simulated or real, and would therefore be interpreted as a success of the present models. Results: The area under the ROC curve, averaged over the observers, was 0.55 (95% confidence interval [0.44, 0.66]) for the 2D study, and 0.46 (95% confidence interval [0.29, 0.64]) for the tomosynthesis study, indicating no statistically significant difference between real and simulated

  15. 3D multiple-point statistics simulation using 2D training images

    NASA Astrophysics Data System (ADS)

    Comunian, A.; Renard, P.; Straubhaar, J.

    2012-03-01

    One of the main issues in the application of multiple-point statistics (MPS) to the simulation of three-dimensional (3D) blocks is the lack of a suitable 3D training image. In this work, we compare three methods of overcoming this issue using information coming from bidimensional (2D) training images. One approach is based on the aggregation of probabilities. The other approaches are novel. One relies on merging the lists obtained using the impala algorithm from diverse 2D training images, creating a list of compatible data events that is then used for the MPS simulation. The other (s2Dcd) is based on sequential simulations of 2D slices constrained by the conditioning data computed at the previous simulation steps. These three methods are tested on the reproduction of two 3D images that are used as references, and on a real case study where two training images of sedimentary structures are considered. The tests show that it is possible to obtain 3D MPS simulations with at least two 2D training images. The simulations obtained, in particular those obtained with the s2Dcd method, are close to the references, according to a number of comparison criteria. The CPU time required to simulate with the method s2Dcd is from two to four orders of magnitude smaller than the one required by a MPS simulation performed using a 3D training image, while the results obtained are comparable. This computational efficiency and the possibility of using MPS for 3D simulation without the need for a 3D training image facilitates the inclusion of MPS in Monte Carlo, uncertainty evaluation, and stochastic inverse problems frameworks.

  16. Numerical simulation of ( T 2, T 1) 2D NMR and fluid responses

    NASA Astrophysics Data System (ADS)

    Tan, Mao-Jin; Zou, You-Long; Zhang, Jin-Yan; Zhao, Xin

    2012-12-01

    One-dimensional nuclear magnetic resonance (1D NMR) logging technology is limited for fluid typing, while two-dimensional nuclear magnetic resonance (2D NMR) logging can provide more parameters including longitudinal relaxation time ( T 1) and transverse relaxation time ( T 2) relative to fluid types in porous media. Based on the 2D NMR relaxation mechanism in a gradient magnetic field, echo train simulation and 2D NMR inversion are discussed in detail. For 2D NMR inversion, a hybrid inversion method is proposed based on the damping least squares method (LSQR) and an improved truncated singular value decomposition (TSVD) algorithm. A series of spin echoes are first simulated with multiple waiting times ( T W s) in a gradient magnetic field for given fluid models and these synthesized echo trains are inverted by the hybrid method. The inversion results are consistent with given models. Moreover, the numerical simulation of various fluid models such as the gas-water, light oil-water, and vicious oil-water models were carried out with different echo spacings ( T E s) and T W s by this hybrid method. Finally, the influences of different signal-to-noise ratios (SNRs) on inversion results in various fluid models are studied. The numerical simulations show that the hybrid method and optimized observation parameters are applicable to fluid typing of gas-water and oil-water models.

  17. 2D and 3D Mass Transfer Simulations in β Lyrae System

    NASA Astrophysics Data System (ADS)

    Nazarenko, V. V.; Glazunova, L. V.; Karetnikov, V. G.

    2001-12-01

    2D and 3D mass transfer simulations of the mass transfer in β Lyrae binary system. We have received that from a point L3 40 per cent of mass transfer from L1-point is lost.The structure of a gas envelope, around system is calculated.3-D mass transfer simulations has shown presence the spiral shock in the disk around primary star's and a jet-like structures (a mass flow in vertical direction) over a stream.

  18. The simulation of 3D mass models in 2D digital mammography and breast tomosynthesis

    SciTech Connect

    Shaheen, Eman De Keyzer, Frederik; Bosmans, Hilde; Ongeval, Chantal Van; Dance, David R.; Young, Kenneth C.

    2014-08-15

    Purpose: This work proposes a new method of building 3D breast mass models with different morphological shapes and describes the validation of the realism of their appearance after simulation into 2D digital mammograms and breast tomosynthesis images. Methods: Twenty-five contrast enhanced MRI breast lesions were collected and each mass was manually segmented in the three orthogonal views: sagittal, coronal, and transversal. The segmented models were combined, resampled to have isotropic voxel sizes, triangularly meshed, and scaled to different sizes. These masses were referred to as nonspiculated masses and were then used as nuclei onto which spicules were grown with an iterative branching algorithm forming a total of 30 spiculated masses. These 55 mass models were projected into 2D projection images to obtain mammograms after image processing and into tomographic sequences of projection images, which were then reconstructed to form 3D tomosynthesis datasets. The realism of the appearance of these mass models was assessed by five radiologists via receiver operating characteristic (ROC) analysis when compared to 54 real masses. All lesions were also given a breast imaging reporting and data system (BIRADS) score. The data sets of 2D mammography and tomosynthesis were read separately. The Kendall's coefficient of concordance was used for the interrater observer agreement assessment for the BIRADS scores per modality. Further paired analysis, using the Wilcoxon signed rank test, of the BIRADS assessment between 2D and tomosynthesis was separately performed for the real masses and for the simulated masses. Results: The area under the ROC curves, averaged over all observers, was 0.54 (95% confidence interval [0.50, 0.66]) for the 2D study, and 0.67 (95% confidence interval [0.55, 0.79]) for the tomosynthesis study. According to the BIRADS scores, the nonspiculated and the spiculated masses varied in their degrees of malignancy from normal (BIRADS 1) to highly

  19. 2D-simulation of wet steam flow in a steam turbine with spontaneous condensation

    NASA Astrophysics Data System (ADS)

    Sun, Lan-Xin; Zheng, Qun; Liu, Shun-Long

    2007-06-01

    Removal of condensates from wet steam flow in the last stages of steam turbines significantly promotes stage efficiency and prevents erosion of rotors. In this paper, homogeneous spontaneous condensation in transonic steam flow in the 2-D rotor-tip section of a stage turbine is investigated. Calculated results agree with experimental data reasonably well. On the basis of the above work, a 2-D numerical simulation of wet steam flow in adjacent root sections of a complex steam turbine stage was carried out. Computational results were analyzed and provide insights into effective removal of humidity.

  20. 2D-3D hybrid stabilized finite element method for tsunami runup simulations

    NASA Astrophysics Data System (ADS)

    Takase, S.; Moriguchi, S.; Terada, K.; Kato, J.; Kyoya, T.; Kashiyama, K.; Kotani, T.

    2016-09-01

    This paper presents a two-dimensional (2D)-three-dimensional (3D) hybrid stabilized finite element method that enables us to predict a propagation process of tsunami generated in a hypocentral region, which ranges from offshore propagation to runup to urban areas, with high accuracy and relatively low computational costs. To be more specific, the 2D shallow water equation is employed to simulate the propagation of offshore waves, while the 3D Navier-Stokes equation is employed for the runup in urban areas. The stabilized finite element method is utilized for numerical simulations for both of the 2D and 3D domains that are independently discretized with unstructured meshes. The multi-point constraint and transmission methods are applied to satisfy the continuity of flow velocities and pressures at the interface between the resulting 2D and 3D meshes, since neither their spatial dimensions nor node arrangements are consistent. Numerical examples are presented to demonstrate the performance of the proposed hybrid method to simulate tsunami behavior, including offshore propagation and runup to urban areas, with substantially lower computation costs in comparison with full 3D computations.

  1. 2D-3D hybrid stabilized finite element method for tsunami runup simulations

    NASA Astrophysics Data System (ADS)

    Takase, S.; Moriguchi, S.; Terada, K.; Kato, J.; Kyoya, T.; Kashiyama, K.; Kotani, T.

    2016-05-01

    This paper presents a two-dimensional (2D)-three-dimensional (3D) hybrid stabilized finite element method that enables us to predict a propagation process of tsunami generated in a hypocentral region, which ranges from offshore propagation to runup to urban areas, with high accuracy and relatively low computational costs. To be more specific, the 2D shallow water equation is employed to simulate the propagation of offshore waves, while the 3D Navier-Stokes equation is employed for the runup in urban areas. The stabilized finite element method is utilized for numerical simulations for both of the 2D and 3D domains that are independently discretized with unstructured meshes. The multi-point constraint and transmission methods are applied to satisfy the continuity of flow velocities and pressures at the interface between the resulting 2D and 3D meshes, since neither their spatial dimensions nor node arrangements are consistent. Numerical examples are presented to demonstrate the performance of the proposed hybrid method to simulate tsunami behavior, including offshore propagation and runup to urban areas, with substantially lower computation costs in comparison with full 3D computations.

  2. FRANC2D: A two-dimensional crack propagation simulator. Version 2.7: User's guide

    NASA Technical Reports Server (NTRS)

    Wawrzynek, Paul; Ingraffea, Anthony

    1994-01-01

    FRANC 2D (FRacture ANalysis Code, 2 Dimensions) is a menu driven, interactive finite element computer code that performs fracture mechanics analyses of 2-D structures. The code has an automatic mesh generator for triangular and quadrilateral elements. FRANC2D calculates the stress intensity factor using linear elastic fracture mechanics and evaluates crack extension using several methods that may be selected by the user. The code features a mesh refinement and adaptive mesh generation capability that is automatically developed according to the predicted crack extension direction and length. The code also has unique features that permit the analysis of layered structure with load transfer through simulated mechanical fasteners or bonded joints. The code was written for UNIX workstations with X-windows graphics and may be executed on the following computers: DEC DecStation 3000 and 5000 series, IBM RS/6000 series, Hewlitt-Packard 9000/700 series, SUN Sparc stations, and most Silicon Graphics models.

  3. Simulation of Cardiac Arrhythmias Using a 2D Heterogeneous Whole Heart Model

    PubMed Central

    Balakrishnan, Minimol; Chakravarthy, V. Srinivasa; Guhathakurta, Soma

    2015-01-01

    Simulation studies of cardiac arrhythmias at the whole heart level with electrocardiogram (ECG) gives an understanding of how the underlying cell and tissue level changes manifest as rhythm disturbances in the ECG. We present a 2D whole heart model (WHM2D) which can accommodate variations at the cellular level and can generate the ECG waveform. It is shown that, by varying cellular-level parameters like the gap junction conductance (GJC), excitability, action potential duration (APD) and frequency of oscillations of the auto-rhythmic cell in WHM2D a large variety of cardiac arrhythmias can be generated including sinus tachycardia, sinus bradycardia, sinus arrhythmia, sinus pause, junctional rhythm, Wolf Parkinson White syndrome and all types of AV conduction blocks. WHM2D includes key components of the electrical conduction system of the heart like the SA (Sino atrial) node cells, fast conducting intranodal pathways, slow conducting atriovenctricular (AV) node, bundle of His cells, Purkinje network, atrial, and ventricular myocardial cells. SA nodal cells, AV nodal cells, bundle of His cells, and Purkinje cells are represented by the Fitzhugh-Nagumo (FN) model which is a reduced model of the Hodgkin-Huxley neuron model. The atrial and ventricular myocardial cells are modeled by the Aliev-Panfilov (AP) two-variable model proposed for cardiac excitation. WHM2D can prove to be a valuable clinical tool for understanding cardiac arrhythmias. PMID:26733873

  4. Simulation of Cardiac Arrhythmias Using a 2D Heterogeneous Whole Heart Model.

    PubMed

    Balakrishnan, Minimol; Chakravarthy, V Srinivasa; Guhathakurta, Soma

    2015-01-01

    Simulation studies of cardiac arrhythmias at the whole heart level with electrocardiogram (ECG) gives an understanding of how the underlying cell and tissue level changes manifest as rhythm disturbances in the ECG. We present a 2D whole heart model (WHM2D) which can accommodate variations at the cellular level and can generate the ECG waveform. It is shown that, by varying cellular-level parameters like the gap junction conductance (GJC), excitability, action potential duration (APD) and frequency of oscillations of the auto-rhythmic cell in WHM2D a large variety of cardiac arrhythmias can be generated including sinus tachycardia, sinus bradycardia, sinus arrhythmia, sinus pause, junctional rhythm, Wolf Parkinson White syndrome and all types of AV conduction blocks. WHM2D includes key components of the electrical conduction system of the heart like the SA (Sino atrial) node cells, fast conducting intranodal pathways, slow conducting atriovenctricular (AV) node, bundle of His cells, Purkinje network, atrial, and ventricular myocardial cells. SA nodal cells, AV nodal cells, bundle of His cells, and Purkinje cells are represented by the Fitzhugh-Nagumo (FN) model which is a reduced model of the Hodgkin-Huxley neuron model. The atrial and ventricular myocardial cells are modeled by the Aliev-Panfilov (AP) two-variable model proposed for cardiac excitation. WHM2D can prove to be a valuable clinical tool for understanding cardiac arrhythmias. PMID:26733873

  5. Nonlinear soil-structure interaction calculations simulating the SIMQUAKE experiment using STEALTH 2D

    NASA Technical Reports Server (NTRS)

    Tang, H. T.; Hofmann, R.; Yee, G.; Vaughan, D. K.

    1980-01-01

    Transient, nonlinear soil-structure interaction simulations of an Electric Power Research Institute, SIMQUAKE experiment were performed using the large strain, time domain STEALTH 2D code and a cyclic, kinematically hardening cap soil model. Results from the STEALTH simulations were compared to identical simulations performed with the TRANAL code and indicate relatively good agreement between all the STEALTH and TRANAL calculations. The differences that are seen can probably be attributed to: (1) large (STEALTH) vs. small (TRANAL) strain formulation and/or (2) grid discretization differences.

  6. Momentum Transport: 2D and 3D Cloud Resolving Model Simulations

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2001-01-01

    The major objective of this study is to investigate the momentum budgets associated with several convective systems that developed during the TOGA COARE IOP (west Pacific warm pool region) and GATE (east Atlantic region). The tool for this study is the improved Goddard Cumulas Ensemble (GCE) model which includes a 3-class ice-phase microphysical scheme, explicit cloud radiative interactive processes and air-sea interactive surface processes. The model domain contains 256 x 256 grid points (with 2 km resolution) in the horizontal and 38 grid points (to a depth of 22 km) in the vertical. The 2D domain has 1024 grid points. The simulations were performed over a 7-day time period (December 19-26, 1992, for TOGA COARE and September 1-7, 1994 for GATE). Cyclic literal boundary conditions are required for this type of long-term integration. Two well organized squall systems (TOGA, COARE February 22, 1993, and GATE September 12, 1994) were also simulated using the 3D GCE model. Only 9 h simulations were required to cover the life time of the squall systems. the lateral boundary conditions were open for these two squall systems simulations. the following will be examined: (1) the momentum budgets in the convective and stratiform regions, (2) the relationship between momentum transport and cloud organization (i.e., well organized squall lines versus less organized convective), (3) the differences and similarities in momentum transport between 2D and 3D simulated convective systems, and (4) the differences and similarities in momentum budgets between cloud systems simulated with open and cyclic lateral boundary conditions. Preliminary results indicate that there are only small differences between 2D and 3D simulated momentum budgets. Major differences occur, however, between momentum budgets associated with squall systems simulated using different lateral boundary conditions.

  7. Modeling and 2-D discrete simulation of dislocation dynamics for plastic deformation of metal

    NASA Astrophysics Data System (ADS)

    Liu, Juan; Cui, Zhenshan; Ou, Hengan; Ruan, Liqun

    2013-05-01

    Two methods are employed in this paper to investigate the dislocation evolution during plastic deformation of metal. One method is dislocation dynamic simulation of two-dimensional discrete dislocation dynamics (2D-DDD), and the other is dislocation dynamics modeling by means of nonlinear analysis. As screw dislocation is prone to disappear by cross-slip, only edge dislocation is taken into account in simulation. First, an approach of 2D-DDD is used to graphically simulate and exhibit the collective motion of a large number of discrete dislocations. In the beginning, initial grains are generated in the simulation cells according to the mechanism of grain growth and the initial dislocation is randomly distributed in grains and relaxed under the internal stress. During the simulation process, the externally imposed stress, the long range stress contribution of all dislocations and the short range stress caused by the grain boundaries are calculated. Under the action of these forces, dislocations begin to glide, climb, multiply, annihilate and react with each other. Besides, thermal activation process is included. Through the simulation, the distribution of dislocation and the stress-strain curves can be obtained. On the other hand, based on the classic dislocation theory, the variation of the dislocation density with time is described by nonlinear differential equations. Finite difference method (FDM) is used to solve the built differential equations. The dislocation evolution at a constant strain rate is taken as an example to verify the rationality of the model.

  8. The influence of slope profile extraction techniques and DEM resolution on 2D rockfall simulation

    NASA Astrophysics Data System (ADS)

    Wang, X.; Frattini, P.; Agliardi, F.; Crosta, G. B.

    2012-04-01

    The development of advanced 3D rockfall modelling algorithms and tools during the last decade has allowed to gain insights in the topographic controls on the quality and reliability of rockfall simulation results. These controls include DEM resolution and roughness, and depend on the adopted rockfall simulation approach and DEM generation techniques. Despite the development of 3D simulations, the 2D modelling approach still remains suitable and convenient in some cases. Therefore, the accuracy of high-quality 3D descriptions of topography must be preserved when extracting slope profiles for 2D simulations. In this perspective, this study compares and evaluates three different techniques commonly used to extract slope profiles from DEM, in order to assess their suitability and effects on rockfall simulation results. These methods include: (A) an "interpolated shape" method (ESRI 3D Analyst), (B) a raw raster sampling method (EZ Profiler), and (C) a vector TIN sampling method (ESRI 3D Analyst). The raster DEMs used in the study were all derived from the same TIN DEM used for method C. For raster DEM, the "interpolated shape" method (A) extracts the profile by bi-linear interpolating the elevation among the four neighbouring cells at each sampling location along the profile trace. The EZ Profiler extension (B) extracts the profile by sampling elevation values directly from the DEM raster grid at each sampling location. These methods have been compared to the extraction of profiles from TIN DEM (C), where slope profile elevations are directly obtained by sampling the TIN triangular facets. 2D rockfall simulations performed using a widely used commercial software (RocfallTM) with the different profiles show that: (1) method A and C provide similar results; (2) runout simulated using profiles obtained by method A is usually shorter than method C; (3) method B presents abrupt horizontal steps in the profiles, resulting in unrealistic runout. To study the influence of DEM

  9. Quantum simulation of 2D topological physics in a 1D array of optical cavities

    PubMed Central

    Luo, Xi-Wang; Zhou, Xingxiang; Li, Chuan-Feng; Xu, Jin-Shi; Guo, Guang-Can; Zhou, Zheng-Wei

    2015-01-01

    Orbital angular momentum of light is a fundamental optical degree of freedom characterized by unlimited number of available angular momentum states. Although this unique property has proved invaluable in diverse recent studies ranging from optical communication to quantum information, it has not been considered useful or even relevant for simulating nontrivial physics problems such as topological phenomena. Contrary to this misconception, we demonstrate the incredible value of orbital angular momentum of light for quantum simulation by showing theoretically how it allows to study a variety of important 2D topological physics in a 1D array of optical cavities. This application for orbital angular momentum of light not only reduces required physical resources but also increases feasible scale of simulation, and thus makes it possible to investigate important topics such as edge-state transport and topological phase transition in a small simulator ready for immediate experimental exploration. PMID:26145177

  10. A faster method for 3D/2D medical image registration--a simulation study.

    PubMed

    Birkfellner, Wolfgang; Wirth, Joachim; Burgstaller, Wolfgang; Baumann, Bernard; Staedele, Harald; Hammer, Beat; Gellrich, Niels Claudius; Jacob, Augustinus Ludwig; Regazzoni, Pietro; Messmer, Peter

    2003-08-21

    3D/2D patient-to-computed-tomography (CT) registration is a method to determine a transformation that maps two coordinate systems by comparing a projection image rendered from CT to a real projection image. Iterative variation of the CT's position between rendering steps finally leads to exact registration. Applications include exact patient positioning in radiation therapy, calibration of surgical robots, and pose estimation in computer-aided surgery. One of the problems associated with 3D/2D registration is the fact that finding a registration includes solving a minimization problem in six degrees of freedom (dof) in motion. This results in considerable time requirements since for each iteration step at least one volume rendering has to be computed. We show that by choosing an appropriate world coordinate system and by applying a 2D/2D registration method in each iteration step, the number of iterations can be grossly reduced from n6 to n5. Here, n is the number of discrete variations around a given coordinate. Depending on the configuration of the optimization algorithm, this reduces the total number of iterations necessary to at least 1/3 of it's original value. The method was implemented and extensively tested on simulated x-ray images of a tibia, a pelvis and a skull base. When using one projective image and a discrete full parameter space search for solving the optimization problem, average accuracy was found to be 1.0 +/- 0.6(degrees) and 4.1 +/- 1.9 (mm) for a registration in six parameters, and 1.0 +/- 0.7(degrees) and 4.2 +/- 1.6 (mm) when using the 5 + 1 dof method described in this paper. Time requirements were reduced by a factor 3.1. We conclude that this hardware-independent optimization of 3D/2D registration is a step towards increasing the acceptance of this promising method for a wide number of clinical applications. PMID:12974581

  11. Combined PDF/SPH method for compressible turbulent flows

    NASA Astrophysics Data System (ADS)

    Welton, Walter Christian

    A particle method which applies the probability density function (PDF) method to compressible turbulent flows is presented. Solution of the PDF equation is achieved using a Lagrangian/Monte Carlo approach which combines techniques borrowed from the field of smoothed particle hydrodynamics (SPH). This combination gives the method a unique ability to extract mean quantities, including the mean pressure gradient, directly from the particles using a grid-free approach. Two algorithms which greatly reduce the computational work for SPH in 1D and 2D have been developed to implement the method; for a simulation with N particles the computational work scales purely as {cal O}(N). The particle method has also been combined with a variance-reduction technique which can significantly reduce statistical error in first and second moments of selected mean flow quantities. When used with a second-order accurate predictor/corrector scheme, the resulting particle method provides a feasible way to obtain accurate PDF solutions to compressible turbulent flow problems. Results are presented for a variety of quasi-1D and 2D flows to demonstrate the method's robustness. These include solutions to both statistically stationary and nonstationary problems, and use both periodic and characteristic-based inflow/outflow boundary conditions. A 2D plane wake simulation also includes comparisons with experimental data and shows good agreement in spite of the simple turbulence model used. Comprehensive studies of numerical errors have also been performed, including a convergence study of the method. Detailed results are presented which confirm the expected behavior of each error.

  12. 2D radiation-magnetohydrodynamic simulations of SATURN imploding Z-pinches

    SciTech Connect

    Hammer, J.H.; Eddleman, J.L.; Springer, P.T.

    1995-11-06

    Z-pinch implosions driven by the SATURN device at Sandia National Laboratory are modeled with a 2D radiation magnetohydrodynamic (MHD) code, showing strong growth of magneto-Rayleigh Taylor (MRT) instability. Modeling of the linear and nonlinear development of MRT modes predicts growth of bubble-spike structures that increase the time span of stagnation and the resulting x-ray pulse width. Radiation is important in the pinch dynamics keeping the sheath relatively cool during the run-in and releasing most of the stagnation energy. The calculations give x-ray pulse widths and magnitudes in reasonable agreement with experiments, but predict a radiating region that is too dense and radially localized at stagnation. We also consider peaked initial density profiles with constant imploding sheath velocity that should reduce MRT instability and improve performance. 2D krypton simulations show an output x-ray power > 80 TW for the peaked profile.

  13. Comparison between 2D and 3D Numerical Modelling of a hot forging simulative test

    SciTech Connect

    Croin, M.; Ghiotti, A.; Bruschi, S.

    2007-04-07

    The paper presents the comparative analysis between 2D and 3D modelling of a simulative experiment, performed in laboratory environment, in which operating conditions approximate hot forging of a turbine aerofoil section. The plane strain deformation was chosen as an ideal case to analyze the process because of the thickness variations in the final section and the consequent distributions of contact pressure and sliding velocity at the interface that are closed to the conditions of the real industrial process. In order to compare the performances of 2D and 3D approaches, two different analyses were performed and compared with the experiments in terms of loads and temperatures peaks at the interface between the dies and the workpiece.

  14. Spatially Resolved Synthetic Spectra from 2D Simulations of Stainless Steel Wire Array Implosions

    SciTech Connect

    Clark, R. W.; Giuliani, J. L.; Thornhill, J. W.; Chong, Y. K.; Dasgupta, A.; Davis, J.

    2009-01-21

    A 2D radiation MHD model has been developed to investigate stainless steel wire array implosion experiments on the Z and refurbished Z machines. This model incorporates within the Mach2 MHD code a self-consistent calculation of the non-LTE kinetics and ray trace based radiation transport. Such a method is necessary in order to account for opacity effects in conjunction with ionization kinetics of K-shell emitting plasmas. Here the model is used to investigate multi-dimensional effects of stainless steel wire implosions. In particular, we are developing techniques to produce non-LTE, axially and/or radially resolved synthetic spectra based upon snapshots of our 2D simulations. Comparisons between experimental spectra and these synthetic spectra will allow us to better determine the state of the experimental pinches.

  15. Simulation of the flow and mass transfer for KDP crystals undergoing 2D translation during growth

    NASA Astrophysics Data System (ADS)

    Zhou, Chuan; Li, Mingwei; Hu, Zhitao; Yin, Huawei; Wang, Bangguo; Cui, Qidong

    2016-09-01

    In this study, a novel motion mode for crystals during growth, i.e., 2D translation, is proposed. Numerical simulations of flow and mass transfer are conducted for the growth of large-scale potassium dihydrogen phosphate (KDP) crystals subjected to the new motion mode. Surface supersaturation and shear stress are obtained as functions of the translational velocity, distance, size, orientation of crystals. The dependence of these two parameters on the flow fields around the crystals is also discussed. The thicknesses of the solute boundary layer varied with translational velocity are described. The characteristics of solution flow and surface supersaturation distribution are summarized, where it suggests that the morphological stability of a crystal surface can be enhanced if the proposed 2D translation is applied to crystal growth.

  16. Simulation of 2D NMR Spectra of Carbohydrates Using GODESS Software.

    PubMed

    Kapaev, Roman R; Toukach, Philip V

    2016-06-27

    Glycan Optimized Dual Empirical Spectrum Simulation (GODESS) is a web service, which has been recently shown to be one of the most accurate tools for simulation of (1)H and (13)C 1D NMR spectra of natural carbohydrates and their derivatives. The new version of GODESS supports visualization of the simulated (1)H and (13)C chemical shifts in the form of most 2D spin correlation spectra commonly used in carbohydrate research, such as (1)H-(1)H TOCSY, COSY/COSY-DQF/COSY-RCT, and (1)H-(13)C edHSQC, HSQC-COSY, HSQC-TOCSY, and HMBC. Peaks in the simulated 2D spectra are color-coded and labeled according to the signal assignment and can be exported in JCAMP-DX format. Peak widths are estimated empirically from the structural features. GODESS is available free of charge via the Internet at the platform of the Carbohydrate Structure Database project ( http://csdb.glycoscience.ru ). PMID:27227420

  17. Application of 2-D simulations to hollow z-pinch implosions

    SciTech Connect

    Peterson, D.L.; Bowers, R.L.; Brownell, J.H.

    1997-12-01

    The application of simulations of z-pinch implosions should have at least two goals: first, to properly model the most important physical processes occurring in the pinch allowing for a better understanding of the experiments and second, provide a design capability for future experiments. Beginning with experiments fielded at Los Alamos on the Pegasus 1 and Pegasus 2 capacitor banks, the authors have developed a methodology for simulating hollow z-pinches in two dimensions which has reproduced important features of the measured experimental current drive, spectrum, radiation pulse shape, peak power and total radiated energy. This methodology employs essentially one free parameter, the initial level of the random density perturbations imposed at the beginning of the 2-D simulation, but in general no adjustments to other parameters are required. Currently the authors are applying this capability to the analysis of recent Saturn and PBFA-Z experiments. The code results provide insight into the nature of the pinch plasma prior to arrival on-axis, during thermalization and development after peak pinch time. Among other things, the simulation results provide an explanation for the production of larger amounts of radiated energy than would be expected from a simple slug-model kinetic energy analysis and the appearance of multiple peaks in the radiation power. The 2-D modeling has also been applied to the analysis of Saturn dynamic hohlraum experiments and is being used in the design of this and other Z-Pinch applications on PBFA-Z.

  18. Fast Acceleration of 2D Wave Propagation Simulations Using Modern Computational Accelerators

    PubMed Central

    Wang, Wei; Xu, Lifan; Cavazos, John; Huang, Howie H.; Kay, Matthew

    2014-01-01

    Recent developments in modern computational accelerators like Graphics Processing Units (GPUs) and coprocessors provide great opportunities for making scientific applications run faster than ever before. However, efficient parallelization of scientific code using new programming tools like CUDA requires a high level of expertise that is not available to many scientists. This, plus the fact that parallelized code is usually not portable to different architectures, creates major challenges for exploiting the full capabilities of modern computational accelerators. In this work, we sought to overcome these challenges by studying how to achieve both automated parallelization using OpenACC and enhanced portability using OpenCL. We applied our parallelization schemes using GPUs as well as Intel Many Integrated Core (MIC) coprocessor to reduce the run time of wave propagation simulations. We used a well-established 2D cardiac action potential model as a specific case-study. To the best of our knowledge, we are the first to study auto-parallelization of 2D cardiac wave propagation simulations using OpenACC. Our results identify several approaches that provide substantial speedups. The OpenACC-generated GPU code achieved more than speedup above the sequential implementation and required the addition of only a few OpenACC pragmas to the code. An OpenCL implementation provided speedups on GPUs of at least faster than the sequential implementation and faster than a parallelized OpenMP implementation. An implementation of OpenMP on Intel MIC coprocessor provided speedups of with only a few code changes to the sequential implementation. We highlight that OpenACC provides an automatic, efficient, and portable approach to achieve parallelization of 2D cardiac wave simulations on GPUs. Our approach of using OpenACC, OpenCL, and OpenMP to parallelize this particular model on modern computational accelerators should be applicable to other computational models of wave propagation in

  19. 2D PIC/MC simulations of electrical asymmetry effect in capacitive coupled plasma

    NASA Astrophysics Data System (ADS)

    Zhang, Quan-Zhi; Jiang, Wei; Wang, You-Nian

    2011-10-01

    Recently a so-called electrical asymmetry effect (EAE), which could achieve high-degree separate control of ion flux and energy in dual-frequency capacitively coupled plasmas, was discovered theoretically by Heil et al. and was confirmed by experiments and theory/numerical simulations later on. However, since there always is a bigger grounded surface area for experiment devices, which reduces the geometrical symmetry, and all the simulations were limited to 1D before, it is, thus, worth studying the EAE when coupling the electrically and geometrically asymmetric discharges theoretically. Here, we perform 2D PIC/MC simulations, which can include both electrically and geometrically asymmetric factors. The EAE on plasma parameters, such as dc self-bias voltage, density profiles, ion energy distribution and power absorption of electron have been examined for different pressures and geometry conditions. Recently a so-called electrical asymmetry effect (EAE), which could achieve high-degree separate control of ion flux and energy in dual-frequency capacitively coupled plasmas, was discovered theoretically by Heil et al. and was confirmed by experiments and theory/numerical simulations later on. However, since there always is a bigger grounded surface area for experiment devices, which reduces the geometrical symmetry, and all the simulations were limited to 1D before, it is, thus, worth studying the EAE when coupling the electrically and geometrically asymmetric discharges theoretically. Here, we perform 2D PIC/MC simulations, which can include both electrically and geometrically asymmetric factors. The EAE on plasma parameters, such as dc self-bias voltage, density profiles, ion energy distribution and power absorption of electron have been examined for different pressures and geometry conditions. This work was supported by the National Natural Science Foundation of China (Grant No 10635010) and the Important National Science & Technology Specific Project (Grant No

  20. Phase Transitions in Quasi-2D Plasma-Dust Systems: Simulations and Experiments

    NASA Astrophysics Data System (ADS)

    Petrov, Oleg; Vasiliev, Mikhail; Statsenko, Konstantin; Koss, Xeniya; Vasilieva, Elena; Myasnikov, Maxim; Lisin, Evgeny

    2015-11-01

    A nature of phase transition in quasi-2D dusty plasma structures was studied and the influence of the quasi-2D cluster size (a number of particles in it) on the features of the phase transition was investigated. Experiments and numerical simulation was conducted for the systems consisting of small (~ 10) and large (~ 103) number of particles. To investigate the phase state of the system with 7, 18 and 100 particles observed in numerical and laboratory experiments, we used the method based on analysis of dynamic entropy. Numerical modeling of small systems was conducted by the Langevin molecular dynamic method with the Langevin force, responsible for the stochastic nature of the motion of particles with a given kinetic temperature. Phase state of systems with the number of elements in the order of 103, was studied using the methods of statistical thermodynamics. Here we present new results of an experimental study of the change of translational and orientational order and topological defects, and the pair interactions at 2D melting of dust cluster in rf discharge plasma. The experimental results have revealed the existence of hexatic phase as well as solid-to-hexatic phase and hexatic-to-liquid transitions. This work was supported by the Russian Science Foundation (O.F. Petrov, M.M.Vasiliev, K.B. Stacenko, X.G. Koss, E.V. Vasilieva, M.I.Myasnikov and E.?.Lisin) through Grant No. 14-12-01440).

  1. 2-D/3-D ECE imaging data for validation of turbulence simulations

    NASA Astrophysics Data System (ADS)

    Choi, Minjun; Lee, Jaehyun; Yun, Gunsu; Lee, Woochang; Park, Hyeon K.; Park, Young-Seok; Sabbagh, Steve A.; Wang, Weixing; Luhmann, Neville C., Jr.

    2015-11-01

    The 2-D/3-D KSTAR ECEI diagnostic can provide a local 2-D/3-D measurement of ECE intensity. Application of spectral analysis techniques to the ECEI data allows local estimation of frequency spectra S (f) , wavenumber spectra S (k) , wavernumber and frequency spectra S (k , f) , and bispectra b (f1 ,f2) of ECE intensity over the 2-D/3-D space, which can be used to validate turbulence simulations. However, the minimum detectable fluctuation amplitude and the maximum detectable wavenumber are limited by the temporal and spatial resolutions of the diagnostic system, respectively. Also, the finite measurement area of the diagnostic channel could introduce uncertainty in the spectra estimation. The limitations and accuracy of the ECEI estimated spectra have been tested by a synthetic ECEI diagnostic with the model and/or fluctuations calculated by GTS. Supported by the NRF of Korea under Contract No. NRF-2014M1A7A1A03029881 and NRF-2014M1A7A1A03029865 and by U.S. DOE grant DE-FG02-99ER54524.

  2. Tuning and simulating a 193-nm resist for 2D applications

    NASA Astrophysics Data System (ADS)

    Howard, William B.; Wiaux, Vincent; Ercken, Monique; Bui, Bang; Byers, Jeff D.; Pochkowski, Mike

    2002-07-01

    For some applications, the usefulness of lithography simulation results depends strongly on the matching between experimental conditions and the simulation input parameters. If this matching is optimized and other sources of error are minimized, then the lithography model can be used to explain printed wafer experimental results. Further, simulation can be useful in predicting the results or in choosing the correct set of experiments. In this paper, PROLITH and ProDATA AutoTune were used to systematically vary simulation input parameters to match measured results on printed wafers used in a 193 nm process. The validity of the simulation parameters was then checked using 3D simulation compared to 2D top-down SEM images. The quality of matching was evaluated using the 1D metrics of average gate CD and Line End Shortening (LES). To ensure the most accurate simulation, a new approach was taken to create a compound mask from GDSII contextual information surrounding an accurate SEM image of the reticle region of interest. Corrections were made to account for all metrology offsets.

  3. Multipacting Simulation Study for 56 MHz Quarter Wave Resonator using 2D Code

    SciTech Connect

    Naik,D.; Ben-Zvi, I.

    2009-01-02

    A beam excited 56 MHz Radio Frequency (RF) Niobium Quarter Wave Resonator (QWR) has been proposed to enhance RHIC beam luminosity and bunching. Being a RF cavity, multipacting is expected; therefore an extensive study was carried out with the Multipac 2.1 2D simulation code. The study revealed that multipacting occurs in various bands up to peak surface electric field 50 kV/m and is concentrated mostly above the beam gap and on the outer conductor. To suppress multipacting, a ripple structure was introduced to the outer conductor and the phenomenon was successfully eliminated from the cavity.

  4. Ion acoustic wave collapse via two-ion wave decay: 2D Vlasov simulation and theory

    NASA Astrophysics Data System (ADS)

    Chapman, Thomas; Berger, Richard; Banks, Jeffrey; Brunner, Stephan

    2015-11-01

    The decay of ion acoustic waves (IAWs) via two-ion wave decay may transfer energy from the electric field of the IAWs to the particles, resulting in a significant heating of resonant particles. This process has previously been shown in numerical simulations to decrease the plasma reflectivity due to stimulated Brillouin scattering. Two-ion wave decay is a fundamental property of ion acoustic waves that occurs over most if not all of the parameter space of relevance to inertial confinement fusion experiments, and can lead to a sudden collapse of IAWs. The treatment of all species kinetically, and in particular the electrons, is required to describe the decay process correctly. We present fully kinetic 2D+2V Vlasov simulations of IAWs undergoing decay to a highly nonlinear turbulent state using the code LOKI. The scaling of the decay rate with characteristic plasma parameters and wave amplitude is shown. A new theory describing two-ion wave decay in 2D, that incorporates key kinetic properties of the electrons, is presented and used to explain quantitatively for the first time the observed decay of IAWs. Work performed under auspices of U.S. DoE by LLNL, Contract DE-AC52-07NA2734. Funded by LDRD 15-ERD-038 and supported by LLNL Grand Challenge allocation.

  5. Superclusters of galaxies from the 2dF redshift survey. 2. Comparison with simulations

    SciTech Connect

    Einasto, Jaan; Einasto, M.; Saar, E.; Tago, E.; Liivamagi, L.J.; Joeveer, M.J; Suhhonenko, I.; Hutsi, G.; Jaaniste, J.; Heinamaki, P.; Muller, V.; Knebe, A.; Tucker, D.; /Fermilab

    2006-04-01

    We investigate properties of superclusters of galaxies found on the basis of the 2dF Galaxy Redshift Survey, and compare them with properties of superclusters from the Millennium Simulation.We study the dependence of various characteristics of superclusters on their distance from the observer, on their total luminosity, and on their multiplicity. The multiplicity is defined by the number of Density Field (DF) clusters in superclusters. Using the multiplicity we divide superclusters into four richness classes: poor, medium, rich and extremely rich.We show that superclusters are asymmetrical and have multi-branching filamentary structure, with the degree of asymmetry and filamentarity being higher for the more luminous and richer superclusters. The comparison of real superclusters with Millennium superclusters shows that most properties of simulated superclusters agree very well with real data, the main differences being in the luminosity and multiplicity distributions.

  6. Calibration and simulation of ASM2d at different temperatures in a phosphorus removal pilot plant.

    PubMed

    García-Usach, F; Ferrer, J; Bouzas, A; Seco, A

    2006-01-01

    In this work, an organic and nutrient removal pilot plant was used to study the temperature influence on phosphorus accumulating organisms. Three experiments were carried out at 13, 20 and 24.5 degrees C, achieving a high phosphorus removal percentage in all cases. The ASM2d model was calibrated at 13 and 20 degrees C and the Arrhenius equation constant was obtained for phosphorus removal processes showing that the temperature influences on the biological phosphorus removal subprocesses in a different degree. The 24.5 degrees C experiment was simulated using the model parameters obtained by means of the Arrhenius equation. The simulation results for the three experiments showed good correspondence with the experimental data, demonstrating that the model and the calibrated parameters were able to predict the pilot plant behaviour. PMID:16889256

  7. Well-posedness and generalized plane waves simulations of a 2D mode conversion model

    NASA Astrophysics Data System (ADS)

    Imbert-Gérard, Lise-Marie

    2015-12-01

    Certain types of electro-magnetic waves propagating in a plasma can undergo a mode conversion process. In magnetic confinement fusion, this phenomenon is very useful to heat the plasma, since it permits to transfer the heat at or near the plasma center. This work focuses on a mathematical model of wave propagation around the mode conversion region, from both theoretical and numerical points of view. It aims at developing, for a well-posed equation, specific basis functions to study a wave mode conversion process. These basis functions, called generalized plane waves, are intrinsically based on variable coefficients. As such, they are particularly adapted to the mode conversion problem. The design of generalized plane waves for the proposed model is described in detail. Their implementation within a discontinuous Galerkin method then provides numerical simulations of the process. These first 2D simulations for this model agree with qualitative aspects studied in previous works.

  8. Comparative modeling of vertical and planar organic phototransistors with 2D drift-diffusion simulations

    NASA Astrophysics Data System (ADS)

    Bezzeccheri, E.; Colasanti, S.; Falco, A.; Liguori, R.; Rubino, A.; Lugli, P.

    2016-05-01

    Vertical Organic Transistors and Phototransistors have been proven to be promising technologies due to the advantages of reduced channel length and larger sensitive area with respect to planar devices. Nevertheless, a real improvement of their performance is subordinate to the quantitative description of their operation mechanisms. In this work, we present a comparative study on the modeling of vertical and planar Organic Phototransistor (OPT) structures. Computer-based simulations of the devices have been carried out with Synopsys Sentaurus TCAD in a 2D Drift-Diffusion framework. The photoactive semiconductor material has been modeled using the virtual semiconductor approach as the archetypal P3HT:PC61BM bulk heterojunction. It has been found that both simulated devices have comparable electrical and optical characteristics, accordingly to recent experimental reports on the subject.

  9. Highly-resolved 2D HYDRA simulations of Double-Shell Ignition Designs

    SciTech Connect

    Milovich, J L; Amendt, P; Hamza, A; Marinak, M; Robey, H

    2006-06-30

    Double-shell (DS) targets (Amendt, P. A. et al., 2002) offer a complementary approach to the cryogenic baseline design (Lindl, J. et al., 2004) for achieving ignition on the National Ignition Facility (NIF). Among the expected benefits are the ease of room temperature preparation and fielding, the potential for lower laser backscatter and the reduced need for careful shock timing. These benefits are offset, however, by demanding fabrication tolerances, e.g., shell concentricity and shell surface smoothness. In particular, the latter is of paramount importance since DS targets are susceptible to the growth of interface perturbations from impulsive and time-dependent accelerations. Previous work (Milovich, J. L. et al., 2004) has indicated that the growth of perturbations on the outer surface of the inner shell is potentially disruptive. To control this instability new designs have been proposed requiring bimetallic inner shells and material-matching mid-Z nanoporous foam. The challenges in manufacturing such exotic foams have led to a further evaluation of the densities and pore sizes needed to reduce the seeding of perturbations on the outer surface of the inner shell, thereby guiding the ongoing material science research efforts. Highly-resolved 2D simulations of porous foams have been performed to establish an upper limit on the allowable pore sizes for instability growth. Simulations indicate that foams with higher densities than previously thought are now possible. Moreover, while at the present time we are only able to simulate foams with average pore sizes larger than 1 micron (due to computational limitations), we can conclude that these pore sizes are potentially problematic. Furthermore, the effect of low-order hohlraum radiation asymmetries on the growth of intrinsic surface perturbations is also addressed. Highly-resolved 2D simulations indicate that the transverse flows that are set up by these low-order mode features (which can excite Kelvin

  10. Progress and Challenges in SPH Simulations of Disk Galaxy Formation: The Combined Role of Resolution and the Star Formation Density Threshold

    NASA Astrophysics Data System (ADS)

    Mayer, L.

    2012-07-01

    We review progress in cosmological SPH simulations of disk galaxy formation. We discuss the role of numerical resolution and sub-grid recipes of star formation and feedback from supernovae, higlighting the important role of a high star formation density threshold comparable to that of star forming molecular gas phase. Two recent succesfull examples, in simulations of the formation of gas-rich bulgeless dwarf galaxies and in simulations of late-type spirals (the ERIS simulations), are presented and discussed. In the ERIS simulations, already in the progenitors at z = 3 the resolution is above the threshold indicated by previous idealized numerical experiments as necessary to minimize numerical angular momentum loss (Kaufmann et al. 2007). A high star formation density threshold maintains an inhomogeneous interstellar medium, where star formation is clustered, and thus the local effect of supernovae feedback is enhanced. As a result, outflows are naturally generated removing 2/3 of the baryons in galaxies with Vvir˜50 km/s and ˜ 30% of the baryons in galaxies with (Vvir ˜ 150 km/s). Low angular momentum baryons are preferentially removed since the strongest bursts of star formation occur predominantly near the center, especially after a merger event. This produces pure exponential disks or small bulges depending on galaxy mass, and, correspondingly, slowly rising or nearly flat rotation curves that match those of observed disk galaxies. In dwarfs the rapid mass removal by outflows generates a core-like distribution in the dark matter. Furthermore, contrary to the common picture, in the ERIS spiral galaxies a bar/pseudobulge forms rapidly, and not secularly, as a result of mergers and interactions at high-z.

  11. Reynolds-Averaged Navier-Stokes Simulation of a 2D Circulation Control Wind Tunnel Experiment

    NASA Technical Reports Server (NTRS)

    Allan, Brian G.; Jones, Greg; Lin, John C.

    2011-01-01

    Numerical simulations are performed using a Reynolds-averaged Navier-Stokes (RANS) flow solver for a circulation control airfoil. 2D and 3D simulation results are compared to a circulation control wind tunnel test conducted at the NASA Langley Basic Aerodynamics Research Tunnel (BART). The RANS simulations are compared to a low blowing case with a jet momentum coefficient, C(sub u), of 0:047 and a higher blowing case of 0.115. Three dimensional simulations of the model and tunnel walls show wall effects on the lift and airfoil surface pressures. These wall effects include a 4% decrease of the midspan sectional lift for the C(sub u) 0.115 blowing condition. Simulations comparing the performance of the Spalart Allmaras (SA) and Shear Stress Transport (SST) turbulence models are also made, showing the SST model compares best to the experimental data. A Rotational/Curvature Correction (RCC) to the turbulence model is also evaluated demonstrating an improvement in the CFD predictions.

  12. Spot size variation FCS in simulations of the 2D Ising model

    NASA Astrophysics Data System (ADS)

    Burns, Margaret C.; Nouri, Mariam; Veatch, Sarah L.

    2016-06-01

    Spot variation fluorescence correlation spectroscopy (svFCS) was developed to study the movement and organization of single molecules in plasma membranes. This experimental technique varies the size of an illumination area while measuring correlations in time using standard fluorescence correlation methods. Frequently, this data is interpreted using the assumption that correlation measurements reflect the dynamics of single molecule motions, and not motions of the average composition. Here, we explore how svFCS measurements report on the dynamics of components diffusing within simulations of a 2D Ising model with a conserved order parameter. Simulated correlation functions report on both the fast dynamics of single component mobility and the slower dynamics of the average composition. Over a range of simulation conditions, a conventional svFCS analysis suggests the presence of anomalous diffusion even though single molecule motions are nearly Brownian in these simulations. This misinterpretation is most significant when the surface density of the fluorescent label is elevated, therefore we suggest future measurements be made over a range of tracer densities. Some simulation conditions reproduce qualitative features of published svFCS experimental data. Overall, this work emphasizes the need to probe membranes using multiple complimentary experimental methodologies in order to draw conclusions regarding the nature of spatial and dynamical heterogeneity in these systems.

  13. A Molecular Dynamics simulation of Hugoniot curves of HMX using ReaxFF and its application in SPH modeling of macroscale terminal effects

    NASA Astrophysics Data System (ADS)

    Liu, Gui-Rong; Wang, Gangyu; Peng, Qing; de, Suvranu

    2015-06-01

    HMX is a widely used high explosive. Hugoniot curve is a valuable tool for analyzing the equations of state, and is of importance for all energetic materials including HMX. The Hugoniot curves serve as one of the key character in continuum modeling of high explosives. It can be obtained from experimental measurements, and recently also from computational studies. In this study, the Hugoniot curve of HMX is calculated using a multi-scale shock technique via Molecular Dynamics (MD) simulations, where the reactive force field ReaxFF is obtained from Quantum Mechanics calculations and tailored for HMX. It is found that our MD Hugoniot curve of HMX from the optimized ReaxFF potential agree well with experiments. The MD Hugoniot curve of HMX is also incorporated in our in-house Smoothed Particle Hydrodynamics (SPH) code for the modeling of the macro-scale explosive behaviors of HMX explosives and HMX cased in a 3D cylinder. The authors would like to acknowledge the generous financial support from the Defense Threat Reduction Agency (DTRA) Grant HDTRA1-13-1-0025.

  14. 3D Radiative Transfer in Eta Carinae: The SimpleX Radiative Transfer Algorithm Applied to 3D SPH Simulations of Eta Car's Colliding Winds

    NASA Astrophysics Data System (ADS)

    Clementel, N.; Madura, T. I.; Kruip, C. J. H.; Icke, V.; Gull, T. R.

    2014-04-01

    At the heart of the spectacular bipolar Homunculus nebula lies an extremely luminous (5*10^6 L_sun) colliding wind binary with a highly eccentric (e ~ 0.9), 5.54-year orbit and a total mass ~ 110 M_sun. Our closest (D ~ 2.3 kpc) and best example of a pre-hypernova environment, Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions, stellar wind-wind collisions, and massive star evolution. In order to improve our knowledge of the system, we need to generate synthetic observations and compare them with the already available and future HST/STIS data. We present initial results from full 3D radiative transfer post-processing of 3D SPH hydrodynamical simulations of the interacting winds of Eta Carinae. We use SimpleX algorithm to obtain the ionization fractions of hydrogen and helium, this results in ionization maps of both species that constrain the regions where these lines can form. These results will allow us to put constraints on the number of ionizing photons coming from the companion. This construction of synthetic observations allows us to obtain insight into the highly complex 3D flows in Eta, from the shape of the ionized volume and its resulting optical/spectral appearance.

  15. Rise characteristics of gas bubbles in a 2D rectangular column: VOF simulations vs experiments

    SciTech Connect

    Krishna, R.; Baten, J.M. van

    1999-10-01

    About five centuries ago, Leonardo da Vinci described the sinuous motion of gas bubbles rising in water. The authors have attempted to simulate the rise trajectories of bubbles of 4, 5, 7, 8, 9, 12, and 20 mm in diameter rising in a 2D rectangular column filled with water. The simulations were carried out using the volume-of-fluid (VOF) technique developed by Hirt and Nichols (J. Computational Physics, 39, 201--225 (1981)). To solve the Navier-Stokes equations of motion the authors used a commercial solver, CFX 4.1c of AEA Technology, UK. They developed their own bubble-tracking algorithm to capture sinuous bubble motions. The 4 and 5 mm bubbles show large lateral motions observed by Da Vinci. The 7, 8 and 9 mm bubble behave like jellyfish. The 12 mm bubble flaps its wings like a bird. The extent of lateral motion of the bubbles decreases with increasing bubble size. Bubbles larger than 20 mm in size assume a spherical cap form and simulations of the rise characteristics match experiments exactly. VOF simulations are powerful tools for a priori determination of the morphology and rise characteristics of bubbles rising in a liquid. Bubble-bubble interactions are also properly modeled by the VOF technique.

  16. Numerical simulation of 2D buoyant jets in ice-covered and temperature-stratified water

    NASA Astrophysics Data System (ADS)

    Gu, Ruochuan

    A two-dimensional (2D) unsteady simulation model is applied to the problem of a submerged warm water discharge into a stratified lake or reservoir with an ice cover. Numerical simulations and analyses are conducted to gain insight into large-scale convective recirculation and flow processes in a cold waterbody induced by a buoyant jet. Jet behaviors under various discharge temperatures are captured by directly modeling flow and thermal fields. Flow structures and processes are described by the simulated spatial and temporal distributions of velocity and temperature in various regions: deflection, recirculation, attachment, and impingement. Some peculiar hydrothermal and dynamic features, e.g. reversal of buoyancy due to the dilution of a warm jet by entraining cold ambient water, are identified and examined. Simulation results show that buoyancy is the most important factor controlling jet behavior and mixing processes. The inflow boundary is treated as a liquid wall from which the jet is offset. Similarity and difference in effects of boundaries perpendicular and parallel to flow, and of buoyancy on jet attachment and impingement, are discussed. Symmetric flow configuration is used to de-emphasize the Coanda effect caused by offset.

  17. Incorporating a Turbulence Transport Model into 2-D Hybrid Hall Thruster Simulations

    NASA Astrophysics Data System (ADS)

    Cha, Eunsun; Cappelli, Mark A.; Fernandez, Eduardo

    2014-10-01

    2-D hybrid simulations of Hall plasma thrusters that do not resolve cross-field transport-generating fluctuations require a model to capture how electrons migrate across the magnetic field. We describe the results of integrating a turbulent electron transport model into simulations of plasma behavior in a plane spanned by the E and B field vectors. The simulations treat the electrons as a fluid and the heavy species (ions/neutrals) as discrete particles. The transport model assumes that the turbulent eddy cascade in the electron fluid to smaller scales is the primary means of electron energy dissipation. Using this model, we compare simulations to experimental measurements made on a laboratory Hall discharge over a range of discharge voltage. Both the current-voltage trends as well as the plasma properties such as plasma temperature, electron density, and ion velocities seem agree favorably with experiments, where a simple Bohm transport model tends to perform poorly in capturing much of the discharge behavior.

  18. Multi-phase SPH modelling of violent hydrodynamics on GPUs

    NASA Astrophysics Data System (ADS)

    Mokos, Athanasios; Rogers, Benedict D.; Stansby, Peter K.; Domínguez, José M.

    2015-11-01

    This paper presents the acceleration of multi-phase smoothed particle hydrodynamics (SPH) using a graphics processing unit (GPU) enabling large numbers of particles (10-20 million) to be simulated on just a single GPU card. With novel hardware architectures such as a GPU, the optimum approach to implement a multi-phase scheme presents some new challenges. Many more particles must be included in the calculation and there are very different speeds of sound in each phase with the largest speed of sound determining the time step. This requires efficient computation. To take full advantage of the hardware acceleration provided by a single GPU for a multi-phase simulation, four different algorithms are investigated: conditional statements, binary operators, separate particle lists and an intermediate global function. Runtime results show that the optimum approach needs to employ separate cell and neighbour lists for each phase. The profiler shows that this approach leads to a reduction in both memory transactions and arithmetic operations giving significant runtime gains. The four different algorithms are compared to the efficiency of the optimised single-phase GPU code, DualSPHysics, for 2-D and 3-D simulations which indicate that the multi-phase functionality has a significant computational overhead. A comparison with an optimised CPU code shows a speed up of an order of magnitude over an OpenMP simulation with 8 threads and two orders of magnitude over a single thread simulation. A demonstration of the multi-phase SPH GPU code is provided by a 3-D dam break case impacting an obstacle. This shows better agreement with experimental results than an equivalent single-phase code. The multi-phase GPU code enables a convergence study to be undertaken on a single GPU with a large number of particles that otherwise would have required large high performance computing resources.

  19. Multiple Frequency Contrast Source Inversion Method for Vertical Electromagnetic Profiling: 2D Simulation Results and Analyses

    NASA Astrophysics Data System (ADS)

    Li, Jinghe; Song, Linping; Liu, Qing Huo

    2016-02-01

    A simultaneous multiple frequency contrast source inversion (CSI) method is applied to reconstructing hydrocarbon reservoir targets in a complex multilayered medium in two dimensions. It simulates the effects of a salt dome sedimentary formation in the context of reservoir monitoring. In this method, the stabilized biconjugate-gradient fast Fourier transform (BCGS-FFT) algorithm is applied as a fast solver for the 2D volume integral equation for the forward computation. The inversion technique with CSI combines the efficient FFT algorithm to speed up the matrix-vector multiplication and the stable convergence of the simultaneous multiple frequency CSI in the iteration process. As a result, this method is capable of making quantitative conductivity image reconstruction effectively for large-scale electromagnetic oil exploration problems, including the vertical electromagnetic profiling (VEP) survey investigated here. A number of numerical examples have been demonstrated to validate the effectiveness and capacity of the simultaneous multiple frequency CSI method for a limited array view in VEP.

  20. Relaxation of ferroelectric states in 2D distributions of quantum dots: EELS simulation

    NASA Astrophysics Data System (ADS)

    Cortés, C. M.; Meza-Montes, L.; Moctezuma, R. E.; Carrillo, J. L.

    2016-06-01

    The relaxation time of collective electronic states in a 2D distribution of quantum dots is investigated theoretically by simulating EELS experiments. From the numerical calculation of the probability of energy loss of an electron beam, traveling parallel to the distribution, it is possible to estimate the damping time of ferroelectric-like states. We generate this collective response of the distribution by introducing a mean field interaction among the quantum dots, and then, the model is extended incorporating effects of long-range correlations through a Bragg–Williams approximation. The behavior of the dielectric function, the energy loss function, and the relaxation time of ferroelectric-like states is then investigated as a function of the temperature of the distribution and the damping constant of the electronic states in the single quantum dots. The robustness of the trends and tendencies of our results indicate that this scheme of analysis can guide experimentalists to develop tailored quantum dots distributions for specific applications.

  1. A new model for two-dimensional numerical simulation of pseudo-2D gas-solids fluidized beds

    SciTech Connect

    Li, Tingwen; Zhang, Yongmin

    2013-10-11

    Pseudo-two dimensional (pseudo-2D) fluidized beds, for which the thickness of the system is much smaller than the other two dimensions, is widely used to perform fundamental studies on bubble behavior, solids mixing, or clustering phenomenon in different gas-solids fluidization systems. The abundant data from such experimental systems are very useful for numerical model development and validation. However, it has been reported that two-dimensional (2D) computational fluid dynamic (CFD) simulations of pseudo-2D gas-solids fluidized beds usually predict poor quantitative agreement with the experimental data, especially for the solids velocity field. In this paper, a new model is proposed to improve the 2D numerical simulations of pseudo-2D gas-solids fluidized beds by properly accounting for the frictional effect of the front and back walls. Two previously reported pseudo-2D experimental systems were simulated with this model. Compared to the traditional 2D simulations, significant improvements in the numerical predictions have been observed and the predicted results are in better agreement with the available experimental data.

  2. Hall-Effect Thruster Simulations with 2-D Electron Transport and Hydrodynamic Ions

    NASA Technical Reports Server (NTRS)

    Mikellides, Ioannis G.; Katz, Ira; Hofer, Richard H.; Goebel, Dan M.

    2009-01-01

    A computational approach that has been used extensively in the last two decades for Hall thruster simulations is to solve a diffusion equation and energy conservation law for the electrons in a direction that is perpendicular to the magnetic field, and use discrete-particle methods for the heavy species. This "hybrid" approach has allowed for the capture of bulk plasma phenomena inside these thrusters within reasonable computational times. Regions of the thruster with complex magnetic field arrangements (such as those near eroded walls and magnets) and/or reduced Hall parameter (such as those near the anode and the cathode plume) challenge the validity of the quasi-one-dimensional assumption for the electrons. This paper reports on the development of a computer code that solves numerically the 2-D axisymmetric vector form of Ohm's law, with no assumptions regarding the rate of electron transport in the parallel and perpendicular directions. The numerical challenges related to the large disparity of the transport coefficients in the two directions are met by solving the equations in a computational mesh that is aligned with the magnetic field. The fully-2D approach allows for a large physical domain that extends more than five times the thruster channel length in the axial direction, and encompasses the cathode boundary. Ions are treated as an isothermal, cold (relative to the electrons) fluid, accounting for charge-exchange and multiple-ionization collisions in the momentum equations. A first series of simulations of two Hall thrusters, namely the BPT-4000 and a 6-kW laboratory thruster, quantifies the significance of ion diffusion in the anode region and the importance of the extended physical domain on studies related to the impact of the transport coefficients on the electron flow field.

  3. Numerical simulation of HTPB combustion in a 2D hybrid slab combustor

    NASA Astrophysics Data System (ADS)

    Gariani, Gabriela; Maggi, Filippo; Galfetti, Luciano

    2011-09-01

    A code for the numerical simulation of combustion processes in hybrid rockets, developed at the Space Propulsion Laboratory of Politecnico di Milano (SPLab), is presented. The code deals with Navier-Stokes equations solved with RANS approach, blowing effect, combustion kinetics and radiation. The equations are closed with k-epsilon turbulence model and well stirred reactor model. The P1 model, a simplification of the PN radiation model, is adopted. Specific simulation tools were developed using OpenFOAM®open source technology. The computational domain is 2D and split in two subdomains, simulating the reacting gas mixture on one side and the solid fuel grain on the other. The interface between the two regions plays a key role as the solid grain pyrolysis comes from a straight solution of the model without shortcuts. A propellant combination with polybutadiene and gaseous oxygen has been chosen and a reduced kinetic model for combustion of butadiene, considered as the major gaseous constituent coming from polybutadiene pyrolysis, has been developed for reactions occurring in oxygen atmosphere. The computational domain tries to replicate the real experimental setup and is split into three areas: pre-chamber, slab zone and post-chamber. High speed camera visualizations of the combustion processes allow to compare the flame height, obtained by the code and by experimental tests, along the grain for given boundary conditions.

  4. Simulation of abrasive flow machining process for 2D and 3D mixture models

    NASA Astrophysics Data System (ADS)

    Dash, Rupalika; Maity, Kalipada

    2015-12-01

    Improvement of surface finish and material removal has been quite a challenge in a finishing operation such as abrasive flow machining (AFM). Factors that affect the surface finish and material removal are media viscosity, extrusion pressure, piston velocity, and particle size in abrasive flow machining process. Performing experiments for all the parameters and accurately obtaining an optimized parameter in a short time are difficult to accomplish because the operation requires a precise finish. Computational fluid dynamics (CFD) simulation was employed to accurately determine optimum parameters. In the current work, a 2D model was designed, and the flow analysis, force calculation, and material removal prediction were performed and compared with the available experimental data. Another 3D model for a swaging die finishing using AFM was simulated at different viscosities of the media to study the effects on the controlling parameters. A CFD simulation was performed by using commercially available ANSYS FLUENT. Two phases were considered for the flow analysis, and multiphase mixture model was taken into account. The fluid was considered to be a

  5. What Can We Learn about Magnetotail Reconnection from 2D PIC Harris-Sheet Simulations?

    NASA Astrophysics Data System (ADS)

    Goldman, M. V.; Newman, D. L.; Lapenta, G.

    2016-03-01

    The Magnetosphere Multiscale Mission (MMS) will provide the first opportunity to probe electron-scale physics during magnetic reconnection in Earth's magnetopause and magnetotail. This article will address only tail reconnection—as a non-steady-state process in which the first reconnected field lines advance away from the x-point in flux pile-up fronts directed Earthward and anti-Earthward. An up-to-date microscopic physical picture of electron and ion-scale collisionless tail reconnection processes is presented based on 2-D Particle-In-Cell (PIC) simulations initiated from a Harris current sheet and on Cluster and Themis measurements of tail reconnection. The successes and limitations of simulations when compared to measured reconnection are addressed in detail. The main focus is on particle and field diffusion region signatures in the tail reconnection geometry. The interpretation of these signatures is vital to enable spacecraft to identify physically significant reconnection events, to trigger meaningful data transfer from MMS to Earth and to construct a useful overall physical picture of tail reconnection. New simulation results and theoretical interpretations are presented for energy transport of particles and fields, for the size and shape of electron and ion diffusion regions, for processes occurring near the fronts and for the j × B (Hall) electric field.

  6. Lattice Boltzmann simulations of 2D laminar flows past two tandem cylinders

    NASA Astrophysics Data System (ADS)

    Mussa, Alberto; Asinari, Pietro; Luo, Li-Shi

    2009-03-01

    We apply the lattice Boltzmann equation (LBE) with multiple-relaxation-time (MRT) collision model to simulate laminar flows in two-dimensions (2D). In order to simulate flows in an unbounded domain with the LBE method, we need to address two issues: stretched non-uniform mesh and inflow and outflow boundary conditions. We use the interpolated grid stretching method to address the need of non-uniform mesh. We demonstrate that various inflow and outflow boundary conditions can be easily and consistently realized with the MRT-LBE. The MRT-LBE with non-uniform stretched grids is first validated with a number of test cases: the Poiseuille flow, the flow past a cylinder asymmetrically placed in a channel, and the flow past a cylinder in an unbounded domain. We use the LBE method to simulate the flow past two tandem cylinders in an unbounded domain with Re = 100. Our results agree well with existing ones. Through this work we demonstrate the effectiveness of the MRT-LBE method with grid stretching.

  7. Application of 2-D simulations to hollow Z-pinch implosions

    SciTech Connect

    Peterson, D. L.; Bowers, R. L.; Brownell, J. H.; Lund, C.; Matuska, W.; McLenithan, K.; Oona, H.; Deeney, C.; Derzon, M.; Spielman, R. B.; Nash, T. J.; Chandler, G.; Mock, R. C.; Sanford, T. W. L.; Matzen, M. K.; Roderick, N. F.

    1997-05-05

    The application of simulations of z-pinch implosions should have at least two goals: first, to properly model the most important physical processes occurring in the pinch allowing for a better understanding of the experiments and second, provide a design capability for future experiments. Beginning with experiments fielded at Los Alamos on the Pegasus I and Pegasus II capacitor banks, we have developed a methodology for simulating hollow z-pinches in two dimensions which has reproduced important features of the measured experimental current drive, spectrum, radiation pulse shape, peak power and total radiated energy (1,2,3). This methodology employs essentially one free parameter, the initial level of the random density perturbations imposed at the beginning of the 2-D simulation, but in general no adjustments to other parameters (such as the resistivity) are required (1). Limitations in the use of this approach include the use of the 3-T, gray diffusion treatment of radiation and the fact that the initial perturbation conditions are not known a priori. Nonetheless, the approach has been successful in reproducing important experimental features of such implosions over a wide variety of timescales (tens of nanoseconds to microseconds), current drives (3 to 16 MA), masses (submilligram to tens of milligrams), initial radii (<1 cm to 5 cm), materials (Al and W) and initial configurations (thin foils and wire arrays with 40 to 240 wires). Currently we are applying this capability to the analysis of recent Saturn and PBFA-Z experiments (4,5). The code results provide insight into the nature of the pinch plasma prior to arrival on-axis, during thermalization and development after peak pinch time. Among other things, the simulation results provide an explanation for the production of larger amounts of radiated energy than would be expected from a simple slug-model kinetic energy analysis and the appearance of multiple peaks in the radiation power. The 2-D modeling has

  8. Application of 2-D simulations to hollow Z-pinch implosions

    SciTech Connect

    Peterson, D.L.; Bowers, R.L.; Brownell, J.H.; Lund, C.; Matuska, W.; McLenithan, K.; Oona, H.; Deeney, C.; Derzon, M.; Spielman, R.B.; Nash, T.J.; Chandler, G.; Mock, R.C.; Sanford, T.W.; Matzen, M.K.; Roderick, N.F.

    1997-05-01

    The application of simulations of z-pinch implosions should have at least two goals: first, to properly model the most important physical processes occurring in the pinch allowing for a better understanding of the experiments and second, provide a design capability for future experiments. Beginning with experiments fielded at Los Alamos on the Pegasus I and Pegasus II capacitor banks, we have developed a methodology for simulating hollow z-pinches in two dimensions which has reproduced important features of the measured experimental current drive, spectrum, radiation pulse shape, peak power and total radiated energy (1,2,3). This methodology employs essentially one free parameter, the initial level of the random density perturbations imposed at the beginning of the 2-D simulation, but in general no adjustments to other parameters (such as the resistivity) are required (1). Limitations in the use of this approach include the use of the 3-T, gray diffusion treatment of radiation and the fact that the initial perturbation conditions are not known {ital a priori}. Nonetheless, the approach has been successful in reproducing important experimental features of such implosions over a wide variety of timescales (tens of nanoseconds to microseconds), current drives (3 to 16 MA), masses (submilligram to tens of milligrams), initial radii ({lt}1cm to 5 cm), materials (Al and W) and initial configurations (thin foils and wire arrays with 40 to 240 wires). Currently we are applying this capability to the analysis of recent Saturn and PBFA-Z experiments (4,5). The code results provide insight into the nature of the pinch plasma prior to arrival on-axis, during thermalization and development after peak pinch time. Among other things, the simulation results provide an explanation for the production of larger amounts of radiated energy than would be expected from a simple slug-model kinetic energy analysis and the appearance of multiple peaks in the radiation power. The 2-D

  9. Radioactive Sediment Transport on Ogaki Dam Reservoir in Fukushima Evacuated Zone: Numerical Simulation Studies by 2-D River Simulation Code

    NASA Astrophysics Data System (ADS)

    Yamada, Susumu; Kitamura, Akihiro; Kurikami, Hiroshi; Machida, Masahiko

    2015-04-01

    Fukushima Daiichi Nuclear Power Plant (FDNPP) accident on March 2011 released significant quantities of radionuclides to atmosphere. The most significant nuclide is radioactive cesium isotopes. Therefore, the movement of the cesium is one of the critical issues for the environmental assessment. Since the cesium is strongly sorbed by soil particles, the cesium transport can be regarded as the sediment transport which is mainly brought about by the aquatic system such as a river and a lake. In this research, our target is the sediment transport on Ogaki dam reservoir which is located in about 16 km northwest from FDNPP. The reservoir is one of the principal irrigation dam reservoirs in Fukushima Prefecture and its upstream river basin was heavily contaminated by radioactivity. We simulate the sediment transport on the reservoir using 2-D river simulation code named Nays2D originally developed by Shimizu et al. (The latest version of Nays2D is available as a code included in iRIC (http://i-ric.org/en/), which is a river flow and riverbed variation analysis software package). In general, a 2-D simulation code requires a huge amount of calculation time. Therefore, we parallelize the code and execute it on a parallel computer. We examine the relationship between the behavior of the sediment transport and the height of the reservoir exit. The simulation result shows that almost all the sand that enter into the reservoir deposit close to the entrance of the reservoir for any height of the exit. The amounts of silt depositing within the reservoir slightly increase by raising the height of the exit. However, that of the clay dramatically increases. Especially, more than half of the clay deposits, if the exit is sufficiently high. These results demonstrate that the water level of the reservoir has a strong influence on the amount of the clay discharged from the reservoir. As a result, we conclude that the tuning of the water level has a possibility for controlling the

  10. 1D and 2D simulations of seismic wave propagation in fractured media

    NASA Astrophysics Data System (ADS)

    Möller, Thomas; Friederich, Wolfgang

    2016-04-01

    Fractures and cracks have a significant influence on the propagation of seismic waves. Their presence causes reflections and scattering and makes the medium effectively anisotropic. We present a numerical approach to simulation of seismic waves in fractured media that does not require direct modelling of the fracture itself, but uses the concept of linear slip interfaces developed by Schoenberg (1980). This condition states that at an interface between two imperfectly bonded elastic media, stress is continuous across the interface while displacement is discontinuous. It is assumed that the jump of displacement is proportional to stress which implies a jump in particle velocity at the interface. We use this condition as a boundary condition to the elastic wave equation and solve this equation in the framework of a Nodal Discontinuous Galerkin scheme using a velocity-stress formulation. We use meshes with tetrahedral elements to discretise the medium. Each individual element face may be declared as a slip interface. Numerical fluxes have been derived by solving the 1D Riemann problem for slip interfaces with elastic and viscoelastic rheology. Viscoelasticity is realised either by a Kelvin-Voigt body or a Standard Linear Solid. These fluxes are not limited to 1D and can - with little modification - be used for simulations in higher dimensions as well. The Nodal Discontinuous Galerkin code "neXd" developed by Lambrecht (2013) is used as a basis for the numerical implementation of this concept. We present examples of simulations in 1D and 2D that illustrate the influence of fractures on the seismic wavefield. We demonstrate the accuracy of the simulation through comparison to an analytical solution in 1D.

  11. Simulation and analysis of solute transport in 2D fracture/pipe networks: The SOLFRAC program

    NASA Astrophysics Data System (ADS)

    Bodin, Jacques; Porel, Gilles; Delay, Fred; Ubertosi, Fabrice; Bernard, Stéphane; de Dreuzy, Jean-Raynald

    2007-01-01

    The Time Domain Random Walk (TDRW) method has been recently developed by Delay and Bodin [Delay, F. and Bodin, J., 2001. Time domain random walk method to simulate transport by advection-dispersion and matrix diffusion in fracture networks. Geophys. Res. Lett., 28(21): 4051-4054.] and Bodin et al. [Bodin, J., Porel, G. and Delay, F., 2003c. Simulation of solute transport in discrete fracture networks using the time domain random walk method. Earth Planet. Sci. Lett., 6566: 1-8.] for simulating solute transport in discrete fracture networks. It is assumed that the fracture network can reasonably be represented by a network of interconnected one-dimensional pipes (i.e. flow channels). Processes accounted for are: (1) advection and hydrodynamic dispersion in the channels, (2) matrix diffusion, (3) diffusion into stagnant zones within the fracture planes, (4) sorption reactions onto the fracture walls and in the matrix, (5) linear decay, and (6) mass sharing at fracture intersections. The TDRW method is handy and very efficient in terms of computation costs since it allows for the one-step calculation of the particle residence time in each bond of the network. This method has been programmed in C++, and efforts have been made to develop an efficient and user-friendly software, called SOLFRAC. This program is freely downloadable at the URL http://labo.univ-poitiers.fr/hydrasa/intranet/telechargement.htm. It calculates solute transport into 2D pipe networks, while considering different types of injections and different concepts of local dispersion within each flow channel. Post-simulation analyses are also available, such as the mean velocity or the macroscopic dispersion at the scale of the entire network. The program may be used to evaluate how a given transport mechanism influences the macroscopic transport behaviour of fracture networks. It may also be used, as is the case, e.g., with analytical solutions, to interpret laboratory or field tracer test experiments

  12. 2-D Three Fluid Simulation of Upstreaming Ions Above Auroral Precipitation

    NASA Astrophysics Data System (ADS)

    Danielides, M. A.; Lummerzheim, D.; Otto, A.; Stevens, R. J.

    2006-12-01

    The ionosphere is a rich reservoir of charged particles from which a variable fraction is transported to the magnetosphere. An important transport phenomena is the formation of upward ion flow above auroral structure. A primary region of the outflow is not known, but contributions come from polar cap, dayside cusp/cleft region, auroral oval, or even from mid-latitudes. In the past global magnetospheric models and fluid codes were used to simulate large scale ion outflow above, e.g., the polar-cap aurora. However, satellites orbiting at low- altitudes have repeatingly detected localized ion outflow above the auroral oval. Ionosphere-magnetosphere coupling simulations gave first insides into the small-scale dynamics of aurora. The aim of this study is the investigation of coupled plasma and neutral dynamics in smaller scale aurora to explain the generation, structure, and dynamics of vertical ion upstream. We consider auroral electron precipitation at ionospheric heights in a 2-D three fluid ionospheric-magnetospheric coupling code (Otto and Zhu, 2003). Specially we examine the effects of the electron precipitation, heat conduction and heating in field- aligned current through coulomb collisions or turbulence causing: i) electron heating, ii) electron pressure gradients, and iii) upstreaming of ions through a resulting ambipolar electric field. Our first case studies are performed for different boundary conditions and for different auroral electron precipitation parameters (variation in characteristic auroral energy, auroral energy flux and horizontal scale). The results shall clarify how auroral precipitation can drive ions upwards. Finally we discuss the effect of ion drag and the interaction of the upstreaming ions with a stable neutral constituent. Otto, O. and H. Zhu, Fluid plasma simulation of coupled systems: Ionosphere and magnetosphere, Space Plasma Simulation. Edited by J. Buechner, C. Dum, and M. Scholer., Lecture Notes in Physics, vol. 615, p.193

  13. 2D properties of core turbulence on DIII-D and comparison to gyrokinetic simulations

    SciTech Connect

    Shafer, Morgan W; Fonck, R. J.; McKee, G. R.; Holland, Chris; White, A. E.; Schlossberg, D J

    2012-01-01

    Quantitative 2D characteristics of localized density fluctuations are presented over the range of 0.3 < r/a < 0.9 in L-mode plasmas on DIII-D [J. L. Luxon, Nucl. Fusion 42, 614 (2002)]. Broadband density fluctuations increase in amplitude from (n) over tilde/n < 0.5% in the deep core to (n) over tilde/n similar to 2.5% near the outer region. The observed Doppler-shift due to the E x B velocity matches well with the measured turbulence group and phase velocities (in toroidally rotating neutral beam heated plasmas). Turbulence decorrelation rates are found to be similar to 200 kHz at the edge and to decrease toward the core (0.45 < r/a < 0.9) where they approach the E x B shearing rate (similar to 50 kHz). Radial and poloidal correlation lengths are found to scale with the ion gyroradius and exhibit an asymmetric poloidally elongated eddy structure. The ensemble-averaged turbulent eddy structure changes its tilt with respect to the radial-poloidal coordinates in the core, consistent with an E x B shear mechanism. The 2D spatial correlation and wavenumber spectra [S(k(r); k(theta))] are presented and compared to nonlinear flux-tube GYRO simulations at two radii, r/a = 0.5 and r/a = 0.75, showing reasonable overall agreement, but the GYRO spectrum exhibits a peak at finite kr for r/a = 0.75 that is not observed experimentally; E x B shear may cause this discrepancy. (C) 2012 American Institute of Physics.

  14. 2D IR spectra of cyanide in water investigated by molecular dynamics simulations

    USGS Publications Warehouse

    Lee, Myung Won; Carr, Joshua K.; Göllner, Michael; Hamm, Peter; Meuwly, Markus

    2013-01-01

    Using classical molecular dynamics simulations, the 2D infrared (IR) spectroscopy of CN− solvated in D2O is investigated. Depending on the force field parametrizations, most of which are based on multipolar interactions for the CN− molecule, the frequency-frequency correlation function and observables computed from it differ. Most notably, models based on multipoles for CN− and TIP3P for water yield quantitatively correct results when compared with experiments. Furthermore, the recent finding that T 1 times are sensitive to the van der Waals ranges on the CN− is confirmed in the present study. For the linear IR spectrum, the best model reproduces the full widths at half maximum almost quantitatively (13.0 cm−1 vs. 14.9 cm−1) if the rotational contribution to the linewidth is included. Without the rotational contribution, the lines are too narrow by about a factor of two, which agrees with Raman and IR experiments. The computed and experimental tilt angles (or nodal slopes) α as a function of the 2D IR waiting time compare favorably with the measured ones and the frequency fluctuation correlation function is invariably found to contain three time scales: a sub-ps, 1 ps, and one on the 10-ps time scale. These time scales are discussed in terms of the structural dynamics of the surrounding solvent and it is found that the longest time scale (≈10 ps) most likely corresponds to solvent exchange between the first and second solvation shell, in agreement with interpretations from nuclear magnetic resonance measurements.

  15. 2D IR spectra of cyanide in water investigated by molecular dynamics simulations.

    PubMed

    Lee, Myung Won; Carr, Joshua K; Göllner, Michael; Hamm, Peter; Meuwly, Markus

    2013-08-01

    Using classical molecular dynamics simulations, the 2D infrared (IR) spectroscopy of CN(-) solvated in D2O is investigated. Depending on the force field parametrizations, most of which are based on multipolar interactions for the CN(-) molecule, the frequency-frequency correlation function and observables computed from it differ. Most notably, models based on multipoles for CN(-) and TIP3P for water yield quantitatively correct results when compared with experiments. Furthermore, the recent finding that T1 times are sensitive to the van der Waals ranges on the CN(-) is confirmed in the present study. For the linear IR spectrum, the best model reproduces the full widths at half maximum almost quantitatively (13.0 cm(-1) vs. 14.9 cm(-1)) if the rotational contribution to the linewidth is included. Without the rotational contribution, the lines are too narrow by about a factor of two, which agrees with Raman and IR experiments. The computed and experimental tilt angles (or nodal slopes) α as a function of the 2D IR waiting time compare favorably with the measured ones and the frequency fluctuation correlation function is invariably found to contain three time scales: a sub-ps, 1 ps, and one on the 10-ps time scale. These time scales are discussed in terms of the structural dynamics of the surrounding solvent and it is found that the longest time scale (≈10 ps) most likely corresponds to solvent exchange between the first and second solvation shell, in agreement with interpretations from nuclear magnetic resonance measurements. PMID:23927269

  16. 2D IR spectra of cyanide in water investigated by molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Lee, Myung Won; Carr, Joshua K.; Göllner, Michael; Hamm, Peter; Meuwly, Markus

    2013-08-01

    Using classical molecular dynamics simulations, the 2D infrared (IR) spectroscopy of CN- solvated in D2O is investigated. Depending on the force field parametrizations, most of which are based on multipolar interactions for the CN- molecule, the frequency-frequency correlation function and observables computed from it differ. Most notably, models based on multipoles for CN- and TIP3P for water yield quantitatively correct results when compared with experiments. Furthermore, the recent finding that T1 times are sensitive to the van der Waals ranges on the CN- is confirmed in the present study. For the linear IR spectrum, the best model reproduces the full widths at half maximum almost quantitatively (13.0 cm-1 vs. 14.9 cm-1) if the rotational contribution to the linewidth is included. Without the rotational contribution, the lines are too narrow by about a factor of two, which agrees with Raman and IR experiments. The computed and experimental tilt angles (or nodal slopes) α as a function of the 2D IR waiting time compare favorably with the measured ones and the frequency fluctuation correlation function is invariably found to contain three time scales: a sub-ps, 1 ps, and one on the 10-ps time scale. These time scales are discussed in terms of the structural dynamics of the surrounding solvent and it is found that the longest time scale (≈10 ps) most likely corresponds to solvent exchange between the first and second solvation shell, in agreement with interpretations from nuclear magnetic resonance measurements.

  17. 2D simulation of transport and degradation in the River Rhine.

    PubMed

    Teichmann, L; Reuschenbach, P; Müller, B; Horn, H

    2002-01-01

    A simple 2D model has been developed for the simulation of mass transport and degradation of substances in the river Rhine. The model describes mass transport in the flow direction with a convective and a dispersive term. Transversal transport is described by segmenting the river and formulating a transversal exchange coefficient between the segments. Degradation can be formulated with any kinetics from first order to complex enzyme kinetics. The model was verified with monitoring data from the river Rhine. The hydrodynamic parameters such as dispersion coefficients and exchange coefficients were fitted to the conductivity, which was assumed to be non-degradable. The degradation term was fitted to ammonia values. The model was used to simulate measured concentrations of a readily (Aniline) and a poorly biodegradable substance (1,4-Dioxan) 10 m from the left river bank. It was the objective of this research program to develop a model which allows a realistic estimation of the locally and regionally predicted environmental concentration of chemical substances in the EU risk assessment scheme. PMID:12380980

  18. Simulations of SH wave scattering due to cracks by the 2-D finite difference method

    NASA Astrophysics Data System (ADS)

    Suzuki, Y.; Kawahara, J.; Okamoto, T.; Miyashita, K.

    2006-05-01

    We simulate SH wave scattering by 2-D parallel cracks using the finite difference method (FDM), instead of the popularly used boundary integral equation method (BIEM). Here special emphasis is put on simplicity; we apply a standard FDM (fourth-order velocity-stress scheme with a staggered grid) to media in cluding traction-freecracks, which are expressed by arrays of grid points with zero traction. Two types of accuracy tests based oncomparison with a reliable BIEM, suggest that the present method gives practically sufficient accuracy, except for the wavefields in the vicinity of cracks, which can be well handled if the second-order FDM is used instead. As an application of this method, we also simulate wave propagation in media with randomly distributed cracks of the same length. We experimentally determine the attenuation and velocity dispersion induced by scattering from the synthetic seismograms, using a waveform averaging technique. It is shown that the results are well explained by a theory based on the Foldy approximation for crack densities of up to about 01. The presence of a free surface does not affect the validity of the theory. A preliminary experiment also suggests that the validity will not change even for multi-scale cracks.

  19. 2D Mesoscale Simulation of Shock Response of Dry Sand in Plate Impact Experiments

    NASA Astrophysics Data System (ADS)

    Pei, L.; Teeter, R. D.; Dwivedi, S. K.; Gupta, Y. M.

    2007-06-01

    The one-dimensional approach with a homogenized continuum model used in the literature to derive the shock Hugoniot of sand from plate impact experimental data neglects heterogeneous deformation and cannot incorporate mesoscale phenomena. We present a 2D mesoscale simulation approach to probe the shock response of dry sand with the main objectives to identify important mesoscale phenomena and the role of inter granular friction. The in-house code ISP-SAND was used to generate sand with desired grain size distribution and porosity. The explicit finite element code ISP-TROTP was used to simulate plate impact experiments of assumed configurations. The deformation of individual sand grains was modeled by non-linear mean stress volume compression relation with an assumed mean stress dependent yield strength. The results show heterogeneous deformation with finite lateral velocity and regions of stress concentrations in the sand sample. The effects of grain size distribution, porosity and friction between grains are discussed by comparing the particle velocity profiles at the window interface. Work supported by DOE and AFOSR.

  20. Simulation of Subgrid Orographic Convection and Precipitation with 2-D Cloud-Resolving Models Embedded in a GCM Grid

    NASA Astrophysics Data System (ADS)

    Jung, J.; Arakawa, A.

    2015-12-01

    Through explicitly resolved cloud-scale processes by embedded 2-D cloud-resolving models (CRMs), the Multiscale Modeling Framework (MMF) known as the superparameterization has been reasonably successful to simulate various atmospheric events over a wide range of time scales. One thing to be justified is, however, if the influence of complex 3-D topography can be adequately represented by the embedded 2-D CRMs. In this study, simulations are performed in the presence of a variety of topography with embedded 3-D and 2-D CRMs in a single-column inactive GCM. Through the comparison between these simulations, it is demonstrated that the 2-D representation of topography is able to simulate the statistics of precipitation due to 3-D topography reasonably well as long as the topographic characteristics, such as the mean and standard deviation, are closely recognized. It is also shown that the use of two perpendicular sets of 2-D representations tends to reduce the error due to a 2-D representation.

  1. Using high resolution bathymetric lidar data for a Telemac2D simulation

    NASA Astrophysics Data System (ADS)

    Dobler, Wolfgang; Baran, Ramona; Steinbacher, Frank; Ritter, Marcel; Aufleger, Markus

    2014-05-01

    Knowledge about the hydraulic situation in a mountain torrent is relevant to quantify flood risks, to study sediment transport and to assess the waterbodies' ecology. To conduct reliable calculations, high-quality terrain data of riverbeds, riverbanks and floodplains are required. Typically, digital terrain models (DTMs) of floodplains are derived from classical airborne laserscanning (red wavelength) together with terrestrial surveys along riverbeds and riverbanks. Usually, these are restricted to a limited number of cross sections. Terrestrial surveys are required since laser measurement systems cannot penetrate the water column of the observed waterbodies. Consequently, data describing the geometry of riverbeds and bank structures are hardly available at high spatial resolutions and extents, comparable to the airborne-laser scanning derived data for river floodplains. In this study, a newly available, water-penetrating airborne laser system (green wavelength, FFG research project between the University of Innsbruck and Riegl LMS) was used to survey a mountain torrent. Detailed and extensive data (~30 points/m² on topo-bathy side) of the riverbed and the riverbanks were acquired with this single sensor. In order to construct a 2D-Telemac simulation, the point cloud was down-sampled to an appropriate resolution required for the simulation. The creation of the mesh was carried out with the Software HydroVish and imported into Blue Kenue for further boundary treatment. On one hand the calibration of the numerical model was based on a known water discharge-rate and on the other on abundant data points of the water surface. The green laser system demonstrates its great potential for such an analysis. The final results of the numerical simulation show clearly the supremacy of using such a high resolution data basis in contrast to the traditional way of terrestrial surveying of cross sections along riverbeds.

  2. A sharp interface method for SPH

    NASA Astrophysics Data System (ADS)

    Zhang, Mingyu; Deng, Xiao-Long

    2015-12-01

    A sharp interface method (SIM) for smoothed particle hydrodynamics (SPH) has been developed to simulate two-phase flows with clear interfaces. The level set function is introduced to capture the interface implicitly. The interface velocity is used to evolve the level set function. The smoothness of the level set function helps to improve the accuracy of the interface curvature. Material discontinuity across the interface is dealt with by the ghost fluid method. The interface states are calculated by applying the jump conditions and are extended to the corresponding ghost fluid particles. The ghost fluid method helps to get smooth and stable calculation near the interface. The performance of the developed method is validated by benchmark tests. The developed SIM for SPH can be applied to simulate low speed two-phase flows of high density ratios with clear interface accurately and stably.

  3. 2D fluid simulations of acoustic waves in pulsed ICP discharges: Comparison with experiments

    NASA Astrophysics Data System (ADS)

    Despiau-Pujo, Emilie; Cunge, Gilles; Sadeghi, Nader; Braithwaite, N. St. J.

    2012-10-01

    Neutral depletion, which is mostly caused by gas heating under typical material processing conditions, is an important phenomenon in high-density plasmas. In low pressure pulsed discharges, experiments show that additional depletion due to electron pressure (Pe) may have a non-negligible influence on radical transport [1]. To evaluate this effect, comparisons between 2D fluid simulations and measurements of gas convection in Ar/Cl2 pulsed ICP plasmas are reported. In the afterglow, Pe drops rapidly by electron cooling which generates a neutral pressure gradient between the plasma bulk and the reactor walls. This in turn forces the cold surrounding gas to move rapidly towards the center, thus launching an acoustic wave in the reactor. Time-resolved measurements of atoms drift velocity and gas temperature by LIF and LAS in the early afterglow are consistent with gas drifting at acoustic wave velocity followed by rapid gas cooling. Similar results are predicted by the model. The ion flux at the reactor walls is also shown to oscillate in phase with the acoustic wave due to ion-neutral friction forces. Finally, during plasma ignition, experiments show opposite phenomena when Pe rises.[4pt] [1] Cunge et al, APL 96, 131501 (2010)

  4. Simulation of bootstrap current in 2D and 3D ideal magnetic fields in tokamaks

    NASA Astrophysics Data System (ADS)

    Raghunathan, M.; Graves, J. P.; Cooper, W. A.; Pedro, M.; Sauter, O.

    2016-09-01

    We aim to simulate the bootstrap current for a MAST-like spherical tokamak using two approaches for magnetic equilibria including externally caused 3D effects such as resonant magnetic perturbations (RMPs), the effect of toroidal ripple, and intrinsic 3D effects such as non-resonant internal kink modes. The first approach relies on known neoclassical coefficients in ideal MHD equilibria, using the Sauter (Sauter et al 1999 Phys. Plasmas 6 2834) expression valid for all collisionalities in axisymmetry, and the second approach being the quasi-analytic Shaing–Callen (Shaing and Callen 1983 Phys. Fluids 26 3315) model in the collisionless regime for 3D. Using the ideal free-boundary magnetohydrodynamic code VMEC, we compute the flux-surface averaged bootstrap current density, with the Sauter and Shaing–Callen expressions for 2D and 3D ideal MHD equilibria including an edge pressure barrier with the application of resonant magnetic perturbations, and equilibria possessing a saturated non-resonant 1/1 internal kink mode with a weak internal pressure barrier. We compare the applicability of the self-consistent iterative model on the 3D applications and discuss the limitations and advantages of each bootstrap current model for each type of equilibrium.

  5. Numerical modeling of surf zone dynamics under weakly plunging breakers with SPH method

    NASA Astrophysics Data System (ADS)

    Makris, Christos V.; Memos, Constantine D.; Krestenitis, Yannis N.

    2016-02-01

    The wave breaking of weak plungers over a relatively mild slope is investigated in this paper. Numerical modeling aspects are studied, concerning the propagation and breaking of shore-normal, nonlinear and regular waves. The two-dimensional (2-D) kinematics and dynamics (fluctuating flow features and large 2-D eddies) of the wave-induced flow on a vertical cross-section over the entire surf zone are simulated with the use of Smoothed Particle Hydrodynamics (SPH). The academic 'open source' code SPHysics v.2 is employed and the viscosity treatment is based on a Sub-Particle Scale (SPS) approach, similarly to the Large Eddy Simulations (LES) concept. Thorough analysis of the turbulent flow scales determines the necessary refinement of the spatial resolution. The initial particle discretization reaches down to the demarcation point between integral turbulence length scales and Taylor micro-scales. A convolution-type integration method is implemented for the transformation of scattered Lagrangian particle data to Eulerian values at fixed gauges. A heuristic technique of ensemble-averaging is used for the discrimination of the fluctuating flow components from coherent structures and ordered wave motion. Comparisons between numerical and experimental data give encouraging results for several wave features. The wave-induced mean flows are simulated plausibly, and even the 'streaming' effect near the bed is reproduced. The recurring vorticity patterns are derived, and coherent 2-D structures inside the surf zone are identified. Fourier spectral analysis of velocities reveals isotropy of 2-D fluctuating dynamics up to rather high frequencies in shear intensified regions. The simulated Reynolds stresses follow patterns that define the characteristic mechanism of wave breaking for weak plungers. Persisting discrepancies at the incipient breaking region confirm the need for fine, massively 'parallel' 3-D SPS-SPH simulations.

  6. A New 2D-Advection-Diffusion Model Simulating Trace Gas Distributions in the Lowermost Stratosphere

    NASA Astrophysics Data System (ADS)

    Hegglin, M. I.; Brunner, D.; Peter, T.; Wirth, V.; Fischer, H.; Hoor, P.

    2004-12-01

    Tracer distributions in the lowermost stratosphere are affected by both, transport (advective and non-advective) and in situ sources and sinks. They influence ozone photochemistry, radiative forcing, and heating budgets. In-situ measurements of long-lived species during eight measurement campaigns revealed relatively simple behavior of the tracers in the lowermost stratosphere when represented in an equivalent-latitude versus potential temperature framework. We here present a new 2D-advection-diffusion model that simulates the main transport pathways influencing the tracer distributions in the lowermost stratosphere. The model includes slow diabatic descent of aged stratospheric air and vertical and/or horizontal diffusion across the tropopause and within the lowermost stratosphere. The diffusion coefficients used in the model represent the combined effects of different processes with the potential of mixing tropospheric air into the lowermost stratosphere such as breaking Rossby and gravity waves, deep convection penetrating the tropopause, turbulent diffusion, radiatively driven upwelling etc. They were specified by matching model simulations to observed distributions of long-lived trace gases such as CO and N2O obtained during the project SPURT. The seasonally conducted campaigns allow us to study the seasonal dependency of the diffusion coefficients. Despite its simplicity the model yields a surprisingly good description of the small scale features of the measurements and in particular of the observed tracer gradients at the tropopause. The correlation coefficients between modeled and measured trace gas distributions were up to 0.95. Moreover, mixing across isentropes appears to be more important than mixing across surfaces of constant equivalent latitude (or PV). With the aid of the model, the distribution of the fraction of tropospheric air in the lowermost stratosphere can be determined.

  7. Icarus: A 2-D Direct Simulation Monte Carlo (DSMC) Code for Multi-Processor Computers

    SciTech Connect

    BARTEL, TIMOTHY J.; PLIMPTON, STEVEN J.; GALLIS, MICHAIL A.

    2001-10-01

    Icarus is a 2D Direct Simulation Monte Carlo (DSMC) code which has been optimized for the parallel computing environment. The code is based on the DSMC method of Bird[11.1] and models from free-molecular to continuum flowfields in either cartesian (x, y) or axisymmetric (z, r) coordinates. Computational particles, representing a given number of molecules or atoms, are tracked as they have collisions with other particles or surfaces. Multiple species, internal energy modes (rotation and vibration), chemistry, and ion transport are modeled. A new trace species methodology for collisions and chemistry is used to obtain statistics for small species concentrations. Gas phase chemistry is modeled using steric factors derived from Arrhenius reaction rates or in a manner similar to continuum modeling. Surface chemistry is modeled with surface reaction probabilities; an optional site density, energy dependent, coverage model is included. Electrons are modeled by either a local charge neutrality assumption or as discrete simulational particles. Ion chemistry is modeled with electron impact chemistry rates and charge exchange reactions. Coulomb collision cross-sections are used instead of Variable Hard Sphere values for ion-ion interactions. The electro-static fields can either be: externally input, a Langmuir-Tonks model or from a Green's Function (Boundary Element) based Poison Solver. Icarus has been used for subsonic to hypersonic, chemically reacting, and plasma flows. The Icarus software package includes the grid generation, parallel processor decomposition, post-processing, and restart software. The commercial graphics package, Tecplot, is used for graphics display. All of the software packages are written in standard Fortran.

  8. Debris Flow Hazard Map Simulation using FLO-2D For Selected Areas in the Philippines

    NASA Astrophysics Data System (ADS)

    Khallil Ferrer, Peter; Llanes, Francesca; dela Resma, Marvee; Realino, Victoriano, II; Obrique, Julius; Ortiz, Iris Jill; Aquino, Dakila; Narod Eco, Rodrigo; Mahar Francisco Lagmay, Alfredo

    2014-05-01

    On December 4, 2012, Super Typhoon Bopha wreaked havoc in the southern region of Mindanao, leaving 1,067 people dead and causing USD 800 million worth of damage. Classified as a Category 5 typhoon by the Joint Typhoon Warning Center (JTWC), Bopha brought intense rainfall and strong winds that triggered landslides and debris flows, particularly in Barangay (village) Andap, New Bataan municipality, in the southern Philippine province of Compostela Valley. The debris flow destroyed school buildings and covered courts and an evacuation center. Compostela Valley also suffered the most casualties of any province: 612 out of a total of 1,067. In light of the disaster in Compostela, measures were immediately devised to improve available geohazard maps to raise public awareness about landslides and debris flows. A debris flow is a very rapid to extremely rapid flow of saturated non-plastic debris in a steep channel. They are generated when heavy rainfall saturates sediments, causing them to flow down river channels within an alluvial fan situated at the base of the slope of a mountain drainage network. Many rural communities in the Philippines, such as Barangay Andap, are situated at the apex of alluvial fans and in the path of potential debris flows. In this study, we conducted simulations of debris flows to assess the risks in inhabited areas throughout the Philippines and validated the results in the field, focusing on the provinces of Pangasinan and Aurora as primary examples. Watersheds that drain in an alluvial fan using a 10-m resolution Synthetic Aperture Radar (SAR)-derived Digital Elevation Model (DEM) was first delineated, and then a 1 in 100-year rain return rainfall scenario for the watershed was used to simulate debris flows using FLO-2D, a flood-routing software. The resulting simulations were used to generate debris flow hazard maps which are consistent with danger zones in alluvial fans delineated previously from satellite imagery and available DEMs. The

  9. Simulation of Inundation Zone triggered by Dam Failure using FLO-2D

    NASA Astrophysics Data System (ADS)

    Lee, K.; Kim, S. W.; Kim, J. M.

    2014-12-01

    Floods due to gradual dam breach can lead to devastating disasters with tremendous loss of life and property. Hence it is important to identify the potential risk areas for natural hazard problem such as dam failure. A numerical modeling approach is often used to build a flood hazard map caused by dam failure. The two primary tasks in the analysis of a dam breach are the prediction of the reservoir outflow hydrograph and the routing of the hydrograph through the downstream valley. The hydrograph to be routed downstream may be prescribed, and parametric models could be used to build a outflow hydrograph once breach parameters capturing breach formation and progress are specified. Even though breach growth is one of the most important parameter in building the reservoir outflow hydrograph, observations are rarely available. In the mean while lake level data is often measured during the dam failure on the real time basis and they may capture the characteristics of breach formation and progress. Thus a simple method is developed to reproduce breach formation. The breach formation is retrieved from lake level data as a function of time during dam failure event. The new method uses an optimization scheme as a primary tool. Because observation for breach formation doesn't exist, it is hard to validate the performance of the new method. Alternatively the retrieved breach formation curve is linked with a parametric dam failure model to give outflow hydrograph. Then FLO-2D is run to route the outflow hydrograph through the downstream valley for the test site. To validate the new method the simulation of FLO-2D is relatively compared with the on-site investigation for the inundation zone. The new method is promising in that it provides reasonable accuracy in the test site. Keywords: Dam failure, Natural hazard, Breach, Hydrograph AcknowledgementThis research was supported by a grant (13SCIPS01) from Smart Civil Infrastructure Research Program funded by Ministry of Land

  10. Simulated KWAJEX Convective Systems Using a 2D and 3D Cloud Resolving Model and Their Comparisons with Radar Observations

    NASA Technical Reports Server (NTRS)

    Shie, Chung-Lin; Tao, Wei-Kuo; Simpson, Joanne

    2003-01-01

    The 1999 Kwajalein Atoll field experiment (KWAJEX), one of several major TRMM (Tropical Rainfall Measuring Mission) field experiments, has successfully obtained a wealth of information and observation data on tropical convective systems over the western Central Pacific region. In this paper, clouds and convective systems that developed during three active periods (Aug 7-12, Aug 17-21, and Aug 29-Sep 13) around Kwajalein Atoll site are simulated using both 2D and 3D Goddard Cumulus Ensemble (GCE) models. Based on numerical results, the clouds and cloud systems are generally unorganized and short lived. These features are validated by radar observations that support the model results. Both the 2D and 3D simulated rainfall amounts and their stratiform contribution as well as the heat, water vapor, and moist static energy budgets are examined for the three convective episodes. Rainfall amounts are quantitatively similar between the two simulations, but the stratiform contribution is considerably larger in the 2D simulation. Regardless of dimension, fo all three cases, the large-scale forcing and net condensation are the two major physical processes that account for the evolution of the budgets with surface latent heat flux and net radiation solar and long-wave radiation)being secondary processes. Quantitative budget differences between 2D and 3D as well as between various episodes will be detailed.Morover, simulated radar signatures and Q1/Q2 fields from the three simulations are compared to each other and with radar and sounding observations.

  11. Numerical Simulation of Supersonic Compression Corners and Hypersonic Inlet Flows Using the RPLUS2D Code

    NASA Technical Reports Server (NTRS)

    Kapoor, Kamlesh; Anderson, Bernhard H.; Shaw, Robert J.

    1994-01-01

    A two-dimensional computational code, PRLUS2D, which was developed for the reactive propulsive flows of ramjets and scramjets, was validated for two-dimensional shock-wave/turbulent-boundary-layer interactions. The problem of compression corners at supersonic speeds was solved using the RPLUS2D code. To validate the RPLUS2D code for hypersonic speeds, it was applied to a realistic hypersonic inlet geometry. Both the Baldwin-Lomax and the Chien two-equation turbulence models were used. Computational results showed that the RPLUS2D code compared very well with experimentally obtained data for supersonic compression corner flows, except in the case of large separated flows resulting from the interactions between the shock wave and turbulent boundary layer. The computational results compared well with the experiment results in a hypersonic NASA P8 inlet case, with the Chien two-equation turbulence model performing better than the Baldwin-Lomax model.

  12. Simulating the oxygen content of ambient organic aerosol with the 2D volatility basis set

    NASA Astrophysics Data System (ADS)

    Murphy, B. N.; Donahue, N. M.; Fountoukis, C.; Pandis, S. N.

    2011-08-01

    A module predicting the oxidation state of organic aerosol (OA) has been developed using the two-dimensional volatility basis set (2D-VBS) framework. This model is an extension of the 1D-VBS framework and tracks saturation concentration and oxygen content of organic species during their atmospheric lifetime. The host model, a one-dimensional Lagrangian transport model, is used to simulate air parcels arriving at Finokalia, Greece during the Finokalia Aerosol Measurement Experiment in May 2008 (FAME-08). Extensive observations were collected during this campaign using an aerosol mass spectrometer (AMS) and a thermodenuder to determine the chemical composition and volatility, respectively, of the ambient OA. Although there are several uncertain model parameters, the consistently high oxygen content of OA measured during FAME-08 (O:C = 0.8) can help constrain these parameters and elucidate OA formation and aging processes that are necessary for achieving the high degree of oxygenation observed. The base-case model reproduces observed OA mass concentrations (measured mean = 3.1 μg m-3, predicted mean = 3.3 μg m-3) and O:C (predicted O:C = 0.78) accurately. A suite of sensitivity studies explore uncertainties due to (1) the anthropogenic secondary OA (SOA) aging rate constant, (2) assumed enthalpies of vaporization, (3) the volatility change and number of oxygen atoms added for each generation of aging, (4) heterogeneous chemistry, (5) the oxidation state of the first generation of compounds formed from SOA precursor oxidation, and (6) biogenic SOA aging. Perturbations in most of these parameters do impact the ability of the model to predict O:C well throughout the simulation period. By comparing measurements of the O:C from FAME-08, several sensitivity cases including a high oxygenation case, a low oxygenation case, and biogenic SOA aging case are found to unreasonably depict OA aging, keeping in mind that this study does not consider possibly important processes

  13. Simulating the oxygen content of ambient organic aerosol with the 2D volatility basis set

    NASA Astrophysics Data System (ADS)

    Murphy, B. N.; Donahue, N. M.; Fountoukis, C.; Pandis, S. N.

    2011-03-01

    A module predicting the oxidation state of organic aerosol (OA) has been developed using the two-dimensional volatility basis set (2D-VBS) framework. This model is an extension of the 1D-VBS framework and tracks saturation concentration and oxygen content of organic species during their atmospheric lifetime. The host model, a one-dimensional Lagrangian transport model, is used to simulate air parcels arriving at Finokalia, Greece during the Finokalia Aerosol Measurement Experiment in May 2008 (FAME-08). Extensive observations were collected during this campaign using an aerosol mass spectrometer (AMS) and a thermodenuder to determine the chemical composition and volatility, respectively, of the ambient OA. Although there are several uncertain model parameters, the consistently high oxygen content of OA measured during FAME-08 (O:C = 0.8) can help constrain these parameters and elucidate OA formation and aging processes that are necessary for achieving the high degree of oxygenation observed. The base-case model reproduces observed OA mass concentrations (measured mean = 3.1 μg m-3, predicted mean = 3.3 μg m-3) and O:C ratio (predicted O:C = 0.78) accurately. A suite of sensitivity studies explore uncertainties due to (1) the anthropogenic secondary OA (SOA) aging rate constant, (2) assumed enthalpies of vaporization, (3) the volatility change and number of oxygen atoms added for each generation of aging, (4) heterogeneous chemistry, (5) the oxidation state of the first generation of compounds formed from SOA precursor oxidation, and (6) biogenic SOA aging. Perturbations in most of these parameters do impact the ability of the model to predict O:C ratios well throughout the simulation period. By comparing measurements of the O:C ratio from FAME-08, several sensitivity cases including a high oxygenation case, low oxygenation case, and biogenic SOA aging case are found to unreasonably depict OA aging. However, many of the cases chosen for this study predict average

  14. 2-D Numerical Simulation of Eruption Clouds : Effects of Turbulent Mixing between Eruption Cloud and Air

    NASA Astrophysics Data System (ADS)

    Suzuki, Y.; KOYAGUCHI, T.; OGAWA, M.; Hachisu, I.

    2001-05-01

    Mixing of eruption cloud and air is one of the most important processes for eruption cloud dynamics. The critical condition of eruption types (eruption column or pyroclastic flow) depends on efficiency of mixing of eruption cloud and the ambient air. However, in most of the previous models (e.g., Sparks,1986; Woods, 1988), the rate of mixing between cloud and air is taken into account by introducing empirical parameters such as entrainment coefficient or turbulent diffusion coefficient. We developed a numerical model of 2-D (axisymmetrical) eruption columns in order to simulate the turbulent mixing between eruption column and air. We calculated the motion of an eruption column from a circular vent on the flat surface of the earth. Supposing that relative velocity of gas and ash particles is sufficiently small, we can treat eruption cloud as a single gas. Equation of state (EOS) for the mixture of the magmatic component (i.e. volcanic gas plus pyroclasts) and air can be expressed by EOS for an ideal gas, because volume fraction of the gas phase is very large. The density change as a function of mixing ratio between air and the magmatic component has a strong non-linear feature, because the density of the mixture drastically decreases as entrained air expands by heating. This non-linear feature can be reproduced by changing the gas constant and the ratio of specific heat in EOS for ideal gases; the molecular weight increases and the ratio of specific heat approaches 1 as the magmatic component increases. It is assumed that the dynamics of eruption column follows the Euler equation, so that no viscous effect except for the numerical viscosity is taken into account. Roe scheme (a general TVD scheme for compressible flow) is used in order to simulate the generation of shock waves inside and around the eruption column. The results show that many vortexes are generated around the boundary between eruption cloud and air, which results in violent mixing. When the size of

  15. SmaggIce 2D Version 1.8: Software Toolkit Developed for Aerodynamic Simulation Over Iced Airfoils

    NASA Technical Reports Server (NTRS)

    Choo, Yung K.; Vickerman, Mary B.

    2005-01-01

    SmaggIce 2D version 1.8 is a software toolkit developed at the NASA Glenn Research Center that consists of tools for modeling the geometry of and generating the grids for clean and iced airfoils. Plans call for the completed SmaggIce 2D version 2.0 to streamline the entire aerodynamic simulation process--the characterization and modeling of ice shapes, grid generation, and flow simulation--and to be closely coupled with the public-domain application flow solver, WIND. Grid generated using version 1.8, however, can be used by other flow solvers. SmaggIce 2D will help researchers and engineers study the effects of ice accretion on airfoil performance, which is difficult to do with existing software tools because of complex ice shapes. Using SmaggIce 2D, when fully developed, to simulate flow over an iced airfoil will help to reduce the cost of performing flight and wind-tunnel tests for certifying aircraft in natural and simulated icing conditions.

  16. An adaptive SPH method for strong shocks

    NASA Astrophysics Data System (ADS)

    Sigalotti, Leonardo Di G.; López, Hender; Trujillo, Leonardo

    2009-09-01

    We propose an alternative SPH scheme to usual SPH Godunov-type methods for simulating supersonic compressible flows with sharp discontinuities. The method relies on an adaptive density kernel estimation (ADKE) algorithm, which allows the width of the kernel interpolant to vary locally in space and time so that the minimum necessary smoothing is applied in regions of low density. We have performed a von Neumann stability analysis of the SPH equations for an ideal gas and derived the corresponding dispersion relation in terms of the local width of the kernel. Solution of the dispersion relation in the short wavelength limit shows that stability is achieved for a wide range of the ADKE parameters. Application of the method to high Mach number shocks confirms the predictions of the linear analysis. Examples of the resolving power of the method are given for a set of difficult problems, involving the collision of two strong shocks, the strong shock-tube test, and the interaction of two blast waves.

  17. Characterizing flow in oil reservoir rock using SPH: absolute permeability

    NASA Astrophysics Data System (ADS)

    Holmes, David W.; Williams, John R.; Tilke, Peter; Leonardi, Christopher R.

    2016-04-01

    In this paper, a three-dimensional smooth particle hydrodynamics (SPH) simulator for modeling grain scale fluid flow in porous rock is presented. The versatility of the SPH method has driven its use in increasingly complex areas of flow analysis, including flows related to permeable rock for both groundwater and petroleum reservoir research. While previous approaches to such problems using SPH have involved the use of idealized pore geometries (cylinder/sphere packs etc), in this paper we detail the characterization of flow in models with geometries taken from 3D X-ray microtomographic imaging of actual porous rock; specifically 25.12 % porosity dolomite. This particular rock type has been well characterized experimentally and described in the literature, thus providing a practical `real world' means of verification of SPH that will be key to its acceptance by industry as a viable alternative to traditional reservoir modeling tools. The true advantages of SPH are realized when adding the complexity of multiple fluid phases, however, the accuracy of SPH for single phase flow is, as yet, under developed in the literature and will be the primary focus of this paper. Flow in reservoir rock will typically occur in the range of low Reynolds numbers, making the enforcement of no-slip boundary conditions an important factor in simulation. To this end, we detail the development of a new, robust, and numerically efficient method for implementing no-slip boundary conditions in SPH that can handle the degree of complexity of boundary surfaces, characteristic of an actual permeable rock sample. A study of the effect of particle density is carried out and simulation results for absolute permeability are presented and compared to those from experimentation showing good agreement and validating the method for such applications.

  18. GodunovSPH with shear viscosity: implementation and tests

    NASA Astrophysics Data System (ADS)

    Cha, Seung-Hoon; Wood, Matt A.

    2016-05-01

    The acceleration and energy dissipation terms due to the shear viscosity have been implemented and tested in GodunovSPH. The double summation method has been employed to avoid the well-known numerical noise of the second derivative in particle based codes. The plane Couette flow with various initial and boundary conditions have been used as tests, and the numerical and analytical results show a good agreement. Not only the viscosity-only calculation, but the full hydrodynamics simulations have been performed, and they show expected results as well. The very low kinematic viscosity simulations show a turbulent pattern when the Reynolds number exceeds ˜102. The critical value of the Reynolds number at the transition point of the laminar and turbulent flows coincides with the previous works approximately. A smoothed dynamic viscosity has been suggested to describe the individual kinematic viscosity of particles. The infinitely extended Couette flow which has two layers of different viscosities has been simulated to check the smoothed dynamic viscosity, and the result agrees well with the analytic solution. In order to compare the standard smoothed particle hydrodynamics (SPH) and GodunovSPH, the two layers test has been performed again with a density contrast. GodunovSPH shows less dispersion than the standard SPH, but there is no significant difference in the results. The results of the viscous ring evolution has also been presented as well, and the numerical results agrees with the analytic solution.

  19. An improved parallel SPH approach to solve 3D transient generalized Newtonian free surface flows

    NASA Astrophysics Data System (ADS)

    Ren, Jinlian; Jiang, Tao; Lu, Weigang; Li, Gang

    2016-08-01

    In this paper, a corrected parallel smoothed particle hydrodynamics (C-SPH) method is proposed to simulate the 3D generalized Newtonian free surface flows with low Reynolds number, especially the 3D viscous jets buckling problems are investigated. The proposed C-SPH method is achieved by coupling an improved SPH method based on the incompressible condition with the traditional SPH (TSPH), that is, the improved SPH with diffusive term and first-order Kernel gradient correction scheme is used in the interior of the fluid domain, and the TSPH is used near the free surface. Thus the C-SPH method possesses the advantages of two methods. Meanwhile, an effective and convenient boundary treatment is presented to deal with 3D multiple-boundary problem, and the MPI parallelization technique with a dynamic cells neighbor particle searching method is considered to improve the computational efficiency. The validity and the merits of the C-SPH are first verified by solving several benchmarks and compared with other results. Then the viscous jet folding/coiling based on the Cross model is simulated by the C-SPH method and compared with other experimental or numerical results. Specially, the influences of macroscopic parameters on the flow are discussed. All the numerical results agree well with available data, and show that the C-SPH method has higher accuracy and better stability for solving 3D moving free surface flows over other particle methods.

  20. Justification for a 2D versus 3D fingertip finite element model during static contact simulations.

    PubMed

    Harih, Gregor; Tada, Mitsunori; Dolšak, Bojan

    2016-10-01

    The biomechanical response of a human hand during contact with various products has not been investigated in details yet. It has been shown that excessive contact pressure on the soft tissue can result in discomfort, pain and also cumulative traumatic disorders. This manuscript explores the benefits and limitations of a simplified two-dimensional vs. an anatomically correct three-dimensional finite element model of a human fingertip. Most authors still use 2D FE fingertip models due to their simplicity and reduced computational costs. However we show that an anatomically correct 3D FE fingertip model can provide additional insight into the biomechanical behaviour. The use of 2D fingertip FE models is justified when observing peak contact pressure values as well as displacement during the contact for the given studied cross-section. On the other hand, an anatomically correct 3D FE fingertip model provides a contact pressure distribution, which reflects the fingertip's anatomy. PMID:26856769

  1. Mach number validation of a new zonal CFD method (ZAP2D) for airfoil simulations

    NASA Technical Reports Server (NTRS)

    Strash, Daniel J.; Summa, Michael; Yoo, Sungyul

    1991-01-01

    A closed-loop overlapped velocity coupling procedure has been utilized to combine a two-dimensional potential-flow panel code and a Navier-Stokes code. The fully coupled two-zone code (ZAP2D) has been used to compute the flow past a NACA 0012 airfoil at Mach numbers ranging from 0.3 to 0.84 near the two-dimensional airfoil C(lmax) point for a Reynolds number of 3 million. For these cases, the grid domain size can be reduced to 3 chord lengths with less than 3-percent loss in accuracy for freestream Mach numbers through 0.8. Earlier validation work with ZAP2D has demonstrated a reduction in the required Navier-Stokes computation time by a factor of 4 for subsonic Mach numbers. For this more challenging condition of high lift and Mach number, the saving in CPU time is reduced to a factor of 2.

  2. Simulation of multi-steps thermal transition in 2D spin-crossover nanoparticles

    NASA Astrophysics Data System (ADS)

    Jureschi, Catalin-Maricel; Pottier, Benjamin-Louis; Linares, Jorge; Richard Dahoo, Pierre; Alayli, Yasser; Rotaru, Aurelian

    2016-04-01

    We have used an Ising like model to study the thermal behavior of a 2D spin crossover (SCO) system embedded in a matrix. The interaction parameter between edge SCO molecules and its local environment was included in the standard Ising like model as an additional term. The influence of the system's size and the ratio between the number of edge molecules and the other molecules were also discussed.

  3. Development and validation of a modelling framework for simulating 2D-mammography and breast tomosynthesis images

    NASA Astrophysics Data System (ADS)

    Elangovan, Premkumar; Warren, Lucy M.; Mackenzie, Alistair; Rashidnasab, Alaleh; Diaz, Oliver; Dance, David R.; Young, Kenneth C.; Bosmans, Hilde; Strudley, Celia J.; Wells, Kevin

    2014-08-01

    Planar 2D x-ray mammography is generally accepted as the preferred screening technique used for breast cancer detection. Recently, digital breast tomosynthesis (DBT) has been introduced to overcome some of the inherent limitations of conventional planar imaging, and future technological enhancements are expected to result in the introduction of further innovative modalities. However, it is crucial to understand the impact of any new imaging technology or methodology on cancer detection rates and patient recall. Any such assessment conventionally requires large scale clinical trials demanding significant investment in time and resources. The concept of virtual clinical trials and virtual performance assessment may offer a viable alternative to this approach. However, virtual approaches require a collection of specialized modelling tools which can be used to emulate the image acquisition process and simulate images of a quality indistinguishable from their real clinical counterparts. In this paper, we present two image simulation chains constructed using modelling tools that can be used for the evaluation of 2D-mammography and DBT systems. We validate both approaches by comparing simulated images with real images acquired using the system being simulated. A comparison of the contrast-to-noise ratios and image blurring for real and simulated images of test objects shows good agreement ( < 9% error). This suggests that our simulation approach is a promising alternative to conventional physical performance assessment followed by large scale clinical trials.

  4. Enhanced job control language procedures for the SIMSYS2D two-dimensional water-quality simulation system

    USGS Publications Warehouse

    Karavitis, G.A.

    1984-01-01

    The SIMSYS2D two-dimensional water-quality simulation system is a large-scale digital modeling software system used to simulate flow and transport of solutes in freshwater and estuarine environments. Due to the size, processing requirements, and complexity of the system, there is a need to easily move the system and its associated files between computer sites when required. A series of job control language (JCL) procedures was written to allow transferability between IBM and IBM-compatible computers. (USGS)

  5. SEM simulation for 2D and 3D inspection metrology and defect review

    NASA Astrophysics Data System (ADS)

    Levi, Shimon; Schwartsband, Ishai; Khristo, Sergey; Ivanchenko, Yan; Adan, Ofer

    2014-03-01

    Advanced SEM simulation has become a key element in the ability of SEM inspection, metrology and defect review to meet the challenges of advanced technologies. It grants additional capabilities to the end user, such as 3D height measurements, accurate virtual metrology, and supports Design Based Metrology to bridge the gap between design layout and SEM image. In this paper we present SEM simulations capabilities, which take into consideration all parts of the SEM physical and electronic path, interaction between Electron beam and material, multi perspective SEM imaging and shadowing derived from proximity effects caused by the interaction of the Secondary Electrons signal with neighboring pattern edges. Optimizing trade-off between simulation accuracy, calibration procedures and computational complexity, the simulation is running in real-time with minimum impact on throughput. Experiment results demonstrate Height measurement capacities, and CAD based simulated pattern is compared with SEM image to evaluate simulated pattern fidelity.

  6. Simulation of Ultra-Small MOSFETs Using a 2-D Quantum-Corrected Drift-Diffusion Model

    NASA Technical Reports Server (NTRS)

    Biegal, Bryan A.; Rafferty, Connor S.; Yu, Zhiping; Ancona, Mario G.; Dutton, Robert W.; Saini, Subhash (Technical Monitor)

    1998-01-01

    The continued down-scaling of electronic devices, in particular the commercially dominant MOSFET, will force a fundamental change in the process of new electronics technology development in the next five to ten years. The cost of developing new technology generations is soaring along with the price of new fabrication facilities, even as competitive pressure intensifies to bring this new technology to market faster than ever before. To reduce cost and time to market, device simulation must become a more fundamental, indeed dominant, part of the technology development cycle. In order to produce these benefits, simulation accuracy must improve markedly. At the same time, device physics will become more complex, with the rapid increase in various small-geometry and quantum effects. This work describes both an approach to device simulator development and a physical model which advance the effort to meet the tremendous electronic device simulation challenge described above. The device simulation approach is to specify the physical model at a high level to a general-purpose (but highly efficient) partial differential equation solver (in this case PROPHET, developed by Lucent Technologies), which then simulates the model in 1-D, 2-D, or 3-D for a specified device and test regime. This approach allows for the rapid investigation of a wide range of device models and effects, which is certainly essential for device simulation to catch up with, and then stay ahead of, electronic device technology of the present and future. The physical device model used in this work is the density-gradient (DG) quantum correction to the drift-diffusion model [Ancona, Phys. Rev. B 35(5), 7959 (1987)]. This model adds tunneling and quantum smoothing of carrier density profiles to the drift-diffusion model. We used the DG model in 1-D and 2-D (for the first time) to simulate both bipolar and unipolar devices. Simulations of heavily-doped, short-base diodes indicated that the DG quantum

  7. Direct MD Simulations of Terahertz Absorption and 2D Spectroscopy Applied to Explosive Crystals.

    PubMed

    Katz, G; Zybin, S; Goddard, W A; Zeiri, Y; Kosloff, R

    2014-03-01

    A direct molecular dynamics simulation of the THz spectrum of a molecular crystal is presented. A time-dependent electric field is added to a molecular dynamics simulation of a crystal slab. The absorption spectrum is composed from the energy dissipated calculated from a series of applied pulses characterized by a carrier frequency. The spectrum of crystalline cyclotrimethylenetrinitramine (RDX) and triacetone triperoxide (TATP) were simulated with the ReaxFF force field. The proposed direct method avoids the linear response and harmonic approximations. A multidimensional extension of the spectroscopy is suggested and simulated based on the nonlinear response to a single polarized pulse of radiation in the perpendicular polarization direction. PMID:26274066

  8. HEAT.PRO - THERMAL IMBALANCE FORCE SIMULATION AND ANALYSIS USING PDE2D

    NASA Technical Reports Server (NTRS)

    Vigue, Y.

    1994-01-01

    HEAT.PRO calculates the thermal imbalance force resulting from satellite surface heating. The heated body of a satellite re-radiates energy at a rate that is proportional to its temperature, losing the energy in the form of photons. By conservation of momentum, this momentum flux out of the body creates a reaction force against the radiation surface, and the net thermal force can be observed as a small perturbation that affects long term orbital behavior of the satellite. HEAT.PRO calculates this thermal imbalance force and then determines its effects on satellite orbits, especially where the Earth's shadowing of an orbiting satellite causes periodic changes in the spacecraft's thermal environment. HEAT.PRO implements a finite element method routine called PDE2D which incorporates material properties to determine the solar panel surface temperatures. The nodal temperatures are computed at specified time steps and are used to determine the magnitude and direction of the thermal force on the spacecraft. These calculations are based on the solar panel orientation and satellite's position with respect to the earth and sun. It is necessary to have accurate, current knowledge of surface emissivity, thermal conductivity, heat capacity, and material density. These parameters, which may change due to degradation of materials in the environment of space, influence the nodal temperatures that are computed and thus the thermal force calculations. HEAT.PRO was written in FORTRAN 77 for Cray series computers running UNICOS. The source code contains directives for and is used as input to the required partial differential equation solver, PDE2D. HEAT.PRO is available on a 9-track 1600 BPI magnetic tape in UNIX tar format (standard distribution medium) or a .25 inch streaming magnetic tape cartridge in UNIX tar format. An electronic copy of the documentation in Macintosh Microsoft Word format is included on the distribution tape. HEAT.PRO was developed in 1991. Cray and UNICOS are

  9. 2D grating simulation for X-ray phase-contrast and dark-field imaging with a Talbot interferometer

    NASA Astrophysics Data System (ADS)

    Zanette, Irene; David, Christian; Rutishauser, Simon; Weitkamp, Timm

    2010-04-01

    Talbot interferometry is a recently developed and an extremely powerful X-ray phase-contrast imaging technique. Besides giving access to ultra-high sensitivity differential phase contrast images, it also provides the dark field image, which is a map of the scattering power of the sample. In this paper we investigate the potentialities of an improved version of the interferometer, in which two dimensional gratings are used instead of standard line grids. This approach allows to overcome the difficulties that might be encountered in the images produced by a one dimensional interferometer. Among these limitations there are the phase wrapping and quantitative phase retrieval problems and the directionality of the differential phase and dark-field signals. The feasibility of the 2D Talbot interferometer has been studied with a numerical simulation on the performances of its optical components under different circumstances. The gratings can be obtained either by an ad hoc fabrication of the 2D structures or by a superposition of two perpendicular linear grids. Through this simulation it has been possible to find the best parameters for a practical implementation of the 2D Talbot interferometer.

  10. 2D Quantum Simulation of MOSFET Using the Non Equilibrium Green's Function Method

    NASA Technical Reports Server (NTRS)

    Svizhenko, Alexel; Anantram, M. P.; Govindan, T. R.; Yan, Jerry (Technical Monitor)

    2000-01-01

    The objectives this viewgraph presentation summarizes include: (1) the development of a quantum mechanical simulator for ultra short channel MOSFET simulation, including theory, physical approximations, and computer code; (2) explore physics that is not accessible by semiclassical methods; (3) benchmarking of semiclassical and classical methods; and (4) study other two-dimensional devices and molecular structure, from discretized Hamiltonian to tight-binding Hamiltonian.

  11. Numerical Simulations of High-Frequency Respiratory Flows in 2D and 3D Lung Bifurcation Models

    NASA Astrophysics Data System (ADS)

    Chen, Zixi; Parameswaran, Shamini; Hu, Yingying; He, Zhaoming; Raj, Rishi; Parameswaran, Siva

    2014-07-01

    To better understand the human pulmonary system and optimize the high-frequency oscillatory ventilation (HFOV) design, numerical simulations were conducted under normal breathing frequency and HFOV condition using a CFD code Ansys Fluent and its user-defined C programs. 2D and 3D double bifurcating lung models were created, and the geometry corresponds to fifth to seventh generations of airways with the dimensions based on the Weibel's pulmonary model. Computations were carried out for different Reynolds numbers (Re = 400 and 1000) and Womersley numbers (α = 4 and 16) to study the air flow fields, gas transportation, and wall shear stresses in the lung airways. Flow structure was compared with experimental results. Both 2D and 3D numerical models successfully reproduced many results observed in the experiment. The oxygen concentration distribution in the lung model was investigated to analyze the influence of flow oscillation on gas transport inside the lung model.

  12. SAGE 2D and 3D Simulations of the Explosive Venting of Supercritical Fluids Through Porous Media

    NASA Astrophysics Data System (ADS)

    Weaver, R.; Gisler, G.; Svensen, H.; Mazzini, A.

    2008-12-01

    Magmatic intrusive events in large igneous provinces heat sedimentary country rock leading to the eventual release of volatiles. This has been proposed as a contributor to climate change and other environmental impacts. By means of numerical simulations, we examine ways in which these volatiles can be released explosively from depth. Gases and fluids cooked out of country rock by metamorphic heating may be confined for a time by impermeable clays or other barriers, developing high pressures and supercritical fluids. If confinement is suddenly breached (by an earthquake for example) in such a way that the fluid has access to porous sediments, a violent eruption of a non-magmatic mixture of fluid and sediment may result. Surface manifestations of these events could be hydrothermal vent complexes, kimberlite pipes, pockmarks, or mud volcanoes. These are widespread on Earth, especially in large igneous provinces, as in the Karoo Basin of South Africa, the North Sea off the Norwegian margin, and the Siberian Traps. We have performed 2D and 3D simulations with the Sage hydrocode (from Los Alamos and Science Applications International) of supercritical venting in a variety of geometries and configurations. The simulations show several different patterns of propagation and fracturing in porous or otherwise weakened overburden, dependent on depth, source conditions (fluid availability, temperature, and pressure), and manner of confinement breach. Results will be given for a variety of 2D and 3D simulations of these events exploring the release of volatiles into the atmosphere.

  13. Simulations of the infrared, Raman, and 2D-IR photon echo spectra of water in nanoscale silica pores

    DOE PAGESBeta

    Burris, Paul C.; Laage, Damien; Thompson, Ward H.

    2016-05-20

    Vibrational spectroscopy is frequently used to characterize nanoconfined liquids and probe the effect of the confining framework on the liquid structure and dynamics relative to the corresponding bulk fluid. However, it is still unclear what molecular-level information can be obtained from such measurements. In this Paper, we address this question by using molecular dynamics (MD) simulations to reproduce the linear infrared (IR), Raman, and two-dimensional IR (2D-IR) photon echo spectra for water confined within hydrophilic (hydroxyl-terminated) silica mesopores. To simplify the spectra the OH stretching region of isotopically dilute HOD in D2O is considered. An empirical mapping approach is usedmore » to obtain the OH vibrational frequencies, transition dipoles, and transition polarizabilities from the MD simulations. The simulated linear IR and Raman spectra are in good general agreement with measured spectra of water in mesoporous silica reported in the literature. The key effect of confinement on the water spectrum is a vibrational blueshift for OH groups that are closest to the pore interface. The blueshift can be attributed to the weaker hydrogen bonds (H-bonds) formed between the OH groups and silica oxygen acceptors. Non-Condon effects greatly diminish the contribution of these OH moieties to the linear IR spectrum, but these weaker H-bonds are readily apparent in the Raman spectrum. The 2D-IR spectra have not yet been measured and thus the present results represent a prediction. Lastly, the simulated spectra indicate that it should be possible to probe the slower spectral diffusion of confined water compared to the bulk liquid by analysis of the 2D-IR spectra.« less

  14. Simulations of the infrared, Raman, and 2D-IR photon echo spectra of water in nanoscale silica pores.

    PubMed

    Burris, Paul C; Laage, Damien; Thompson, Ward H

    2016-05-21

    Vibrational spectroscopy is frequently used to characterize nanoconfined liquids and probe the effect of the confining framework on the liquid structure and dynamics relative to the corresponding bulk fluid. However, it is still unclear what molecular-level information can be obtained from such measurements. In this paper, we address this question by using molecular dynamics (MD) simulations to reproduce the linear infrared (IR), Raman, and two-dimensional IR (2D-IR) photon echo spectra for water confined within hydrophilic (hydroxyl-terminated) silica mesopores. To simplify the spectra the OH stretching region of isotopically dilute HOD in D2O is considered. An empirical mapping approach is used to obtain the OH vibrational frequencies, transition dipoles, and transition polarizabilities from the MD simulations. The simulated linear IR and Raman spectra are in good general agreement with measured spectra of water in mesoporous silica reported in the literature. The key effect of confinement on the water spectrum is a vibrational blueshift for OH groups that are closest to the pore interface. The blueshift can be attributed to the weaker hydrogen bonds (H-bonds) formed between the OH groups and silica oxygen acceptors. Non-Condon effects greatly diminish the contribution of these OH moieties to the linear IR spectrum, but these weaker H-bonds are readily apparent in the Raman spectrum. The 2D-IR spectra have not yet been measured and thus the present results represent a prediction. The simulated spectra indicates that it should be possible to probe the slower spectral diffusion of confined water compared to the bulk liquid by analysis of the 2D-IR spectra. PMID:27208967

  15. Simulations of the infrared, Raman, and 2D-IR photon echo spectra of water in nanoscale silica pores

    NASA Astrophysics Data System (ADS)

    Burris, Paul C.; Laage, Damien; Thompson, Ward H.

    2016-05-01

    Vibrational spectroscopy is frequently used to characterize nanoconfined liquids and probe the effect of the confining framework on the liquid structure and dynamics relative to the corresponding bulk fluid. However, it is still unclear what molecular-level information can be obtained from such measurements. In this paper, we address this question by using molecular dynamics (MD) simulations to reproduce the linear infrared (IR), Raman, and two-dimensional IR (2D-IR) photon echo spectra for water confined within hydrophilic (hydroxyl-terminated) silica mesopores. To simplify the spectra the OH stretching region of isotopically dilute HOD in D2O is considered. An empirical mapping approach is used to obtain the OH vibrational frequencies, transition dipoles, and transition polarizabilities from the MD simulations. The simulated linear IR and Raman spectra are in good general agreement with measured spectra of water in mesoporous silica reported in the literature. The key effect of confinement on the water spectrum is a vibrational blueshift for OH groups that are closest to the pore interface. The blueshift can be attributed to the weaker hydrogen bonds (H-bonds) formed between the OH groups and silica oxygen acceptors. Non-Condon effects greatly diminish the contribution of these OH moieties to the linear IR spectrum, but these weaker H-bonds are readily apparent in the Raman spectrum. The 2D-IR spectra have not yet been measured and thus the present results represent a prediction. The simulated spectra indicates that it should be possible to probe the slower spectral diffusion of confined water compared to the bulk liquid by analysis of the 2D-IR spectra.

  16. Tracer dispersion simulation in low wind speed conditions with a new 2D Langevin equation system

    NASA Astrophysics Data System (ADS)

    Anfossi, D.; Alessandrini, S.; Trini Castelli, S.; Ferrero, E.; Oettl, D.; Degrazia, G.

    The simulation of atmospheric dispersion in low wind speed conditions (LW) is still recognised as a challenge for modellers. Recently, a new system of two coupled Langevin equations that explicitly accounts for meandering has been proposed. It is based on the study of turbulence and dispersion properties in LW. The new system was implemented in the Lagrangian stochastic particle models LAMBDA and GRAL. In this paper we present simulations with this new approach applying it to the tracer experiments carried out in LW by Idaho National Engineering Laboratory (INEL, USA) in 1974 and by the Graz University of Technology and CNR-Torino near Graz in 2003. To assess the improvement obtained with the present model with respect to previous models not taking into account the meandering effect, the simulations for the INEL experiments were also performed with the old version of LAMBDA. The results of the comparisons clearly indicate that the new approach improves the simulation results.

  17. Radar Reflectivity Simulated by a 2-D Spectra Bin Model: Sensitivity of Cloud-aerosol Interaction

    NASA Technical Reports Server (NTRS)

    Li, Kiaowen; Tao, Wei-Kuo; Khain, Alexander; Simpson, Joanne; Johnson, Daniel

    2003-01-01

    The Goddard Cumulus Ensemble (GCE) model with bin spectra microphysics is used to simulate mesoscale convective systems.The model uses explicit bins to represent size spectra of cloud nuclei, water drops, ice crystals, snow and graupel. Each hydrometeorite category is described by 33 mass bins. The simulations provide a unique data set of simulated raindrop size distribution in a realistic dynamic frame. Calculations of radar parameters using simulated drop size distribution serve as an evaluation of numerical model performance. In addition, the GCE bin spectra modes is a very useful tool to study uncertainties related to radar observations; all the environmental parameters are precisely known. In this presentation, we concentrate on the discussion of Z-R (ZDR-R) relation in the simulated systems. Due to computational limitations, the spectra bin model has been run in two dimensions with 31 stretched vertical layers and 1026 horizontal grid points (1 km resolution). Two different cases, one in midlatitude continent, the other in tropical ocean, have been simulated. The continental case is a strong convection which lasted for two hours. The oceanic case is a persistent system with more than 10 hours' life span. It is shown that the simulated Z-R (ZDR-R) relations generally agree with observations using radar and rain gauge data. The spatial and temporal variations of Z-R relation in different locations are also analyzed. Impact of aerosols on cloud formation and raindrop size distribution was studied. Both clean (low CCN) and dirty (high CCN) cases are simulated. The Z-R relation is shown to vary considerable in the initial CCN concentrations.

  18. Modelling multi-phase liquid-sediment scour and resuspension induced by rapid flows using Smoothed Particle Hydrodynamics (SPH) accelerated with a Graphics Processing Unit (GPU)

    NASA Astrophysics Data System (ADS)

    Fourtakas, G.; Rogers, B. D.

    2016-06-01

    A two-phase numerical model using Smoothed Particle Hydrodynamics (SPH) is applied to two-phase liquid-sediments flows. The absence of a mesh in SPH is ideal for interfacial and highly non-linear flows with changing fragmentation of the interface, mixing and resuspension. The rheology of sediment induced under rapid flows undergoes several states which are only partially described by previous research in SPH. This paper attempts to bridge the gap between the geotechnics, non-Newtonian and Newtonian flows by proposing a model that combines the yielding, shear and suspension layer which are needed to predict accurately the global erosion phenomena, from a hydrodynamics prospective. The numerical SPH scheme is based on the explicit treatment of both phases using Newtonian and the non-Newtonian Bingham-type Herschel-Bulkley-Papanastasiou constitutive model. This is supplemented by the Drucker-Prager yield criterion to predict the onset of yielding of the sediment surface and a concentration suspension model. The multi-phase model has been compared with experimental and 2-D reference numerical models for scour following a dry-bed dam break yielding satisfactory results and improvements over well-known SPH multi-phase models. With 3-D simulations requiring a large number of particles, the code is accelerated with a graphics processing unit (GPU) in the open-source DualSPHysics code. The implementation and optimisation of the code achieved a speed up of x58 over an optimised single thread serial code. A 3-D dam break over a non-cohesive erodible bed simulation with over 4 million particles yields close agreement with experimental scour and water surface profiles.

  19. Fourier based methodology for simulating 2D-random shapes in heterogeneous materials

    NASA Astrophysics Data System (ADS)

    Mattrand, C.; Béakou, A.; Charlet, K.

    2015-08-01

    Gaining insights into the effects of microstructural details on materials behavior may be achieved by incorporating their attributes into numerical modeling. This requires us to make considerable efforts to feature heterogeneity morphology distributions and their spatial arrangement. This paper focuses on modeling the scatter observed in materials heterogeneity geometry. The proposed strategy is based on the development of a 1D-shape signature function representing the 2D-section of a given shape, on Fourier basis functions. The Fourier coefficients are then considered as random variables. This methodology has been applied to flax fibers which are gradually introduced into composite materials as a potential alternative to synthetic reinforcements. In this contribution, the influence of some underlying assumptions regarding the choice of one 1D-shape signature function, its discretization scheme and truncation level, and the best way of modeling the associated random variables is also investigated. Some configurations coming from the combination of these tuning parameters are found to be sufficiently relevant to render efficiently the morphometric factors of the observed fibers statistically speaking.

  20. Monte Carlo simulations of a novel Micromegas 2D array for proton dosimetry

    NASA Astrophysics Data System (ADS)

    Dolney, D.; Ainsley, C.; Hollebeek, R.; Maughan, R.

    2016-02-01

    Modern proton therapy affords control of the delivery of radiotherapeutic dose on fine length and temporal scales. The authors have developed a novel detector technology based on Micromesh Gaseous Structure (Micromegas) that is uniquely tailored for applications using therapeutic proton beams. An implementation of a prototype Micromegas detector for Monte Carlo using Geant4 is presented here. Comparison of simulation results with measurements demonstrates agreement in relative dose along the proton longitudinal dose profile to be 1%. The effect of a radioactive calibration source embedded in the chamber gas is demonstrated by measurements and reproduced by simulations, also at the 1% level. Our Monte Carlo simulations are shown to reproduce the time structure of ionization pulses produced by a double-scattering delivery system.

  1. Impact of uncertainties in parameterized cloud-microphysical processes on the simulated development of an idealized 2-D squall line

    NASA Astrophysics Data System (ADS)

    Michelson, Sara; Bao, Jian-Wen; Grell, Evelyn

    2016-04-01

    In this study, numerical model simulations of an idealized 2-D squall line are investigated using microphysics budget analysis. Four commonly-used microphysics schemes of various complexity are used in the simulations. Diagnoses of the source and sink terms of the hydrometeor budget equations reveal that the differences related to the assumptions of hydrometeor size-distributions between the schemes lead to the differences in the simulations due to the net effect of various microphysical processes on the interaction between latent heating/evaporative cooling and flow dynamics as the squall line develops. Results from this study also highlight the possibility that the advantage of double-moment formulations can be overshadowed by the uncertainties in the spectral definition of individual hydrometeor categories and spectrum-dependent microphysical processes.

  2. A Mass Conservative Method for Integrating 1-D Vadose Zone Simulations Discretized in the Moisture Content Domain with 2-D Groundwater Interflow Simulations

    NASA Astrophysics Data System (ADS)

    Steinke, R. C.

    2015-12-01

    Discretizing 1-D vadose zone simulations in the moisture content domain, such as is done in the Talbot-Ogden method, provides some advantages over discretizing in depth, such as is done in Richards' Equation. These advantages include inherent mass conservation and lower computational cost. However, doing so presents a difficulty for integration with 2-D groundwater interflow simulations. The equations of motion of the bins of discrete moisture content take the depth of the water table as an input. They do not produce it as an output. Finding the correct water table depth so that the groundwater recharge from the 1-D vadose zone simulation mass balances with the lateral flows from the 2-D groundwater interflow simulation was a previously unsolved problem. In this paper we present a net-groundwater-recharge method to solve to this problem and compare it with the source-term method used with Richards' Equation.

  3. 2D and 3D PIC-MCC simulations of a low temperature magnetized plasma on CPU and GPU

    NASA Astrophysics Data System (ADS)

    Claustre, Jonathan; Chaudhury, Bhaskar; Fubiani, Gwenael; Boeuf, Jean-Pierre

    2012-10-01

    A Particle-In-Cell Monte Carlo Collisions model is used to described plasma transport in a low temperature magnetized plasma under conditions similar to those of the negative ion source for the neutral beam injector of ITER. A large diamagnetic electron current is present in the plasma because of the electron pressure gradient between the ICP driver of the source and the entrance of the magnetic filter, and is directed toward the chamber walls. The plasma potential adjusts to limit the diamagnetic electron current to the wall, leading to large electron current flow through the filter, and to a non uniform plasma density in the region between magnetic filter and extracting grids. On the basis of the PIC-MCC simulation results, we describe the plasma properties and electron current density distributions through the filter in 2D and 3D situations and use these models to better understand plasma transport across the filter in these conditions. We also present comparisons between computation times of two PIC-MCC simulation codes that have been developed for operations on standard CPU (Central Processing Units, code in Fortran) and on GPU (Graphics Processing Units, code in CUDA). The results show that the GPU simulation is about 25 times faster than the CPU one for a 2D domain with 512x512 grid points. The computation time ratio increases with the number of grid points.

  4. Numerical simulations of heavily polluted fine-grained sediment remobilization using 1D, 1D+, and 2D channel schematization.

    PubMed

    Kaiglová, Jana; Langhammer, Jakub; Jiřinec, Petr; Janský, Bohumír; Chalupová, Dagmar

    2015-03-01

    This article used various hydrodynamic and sediment transport models to analyze the potential and the limits of different channel schematizations. The main aim was to select and evaluate the most suitable simulation method for fine-grained sediment remobilization assessment. Three types of channel schematization were selected to study the flow potential for remobilizing fine-grained sediment in artificially modified channels. Schematization with a 1D cross-sectional horizontal plan, a 1D+ approach, splitting the riverbed into different functional zones, and full 2D mesh, adopted in MIKE by the DHI modeling suite, was applied to the study. For the case study, a 55-km stretch of the Bílina River, in the Czech Republic, Central Europe, which has been heavily polluted by the chemical and coal mining industry since the mid-twentieth century, was selected. Long-term exposure to direct emissions of toxic pollutants including heavy metals and persistent organic pollutants (POPs) resulted in deposits of pollutants in fine-grained sediments in the riverbed. Simulations, based on three hydrodynamic model schematizations, proved that for events not exceeding the extent of the riverbed profile, the 1D schematization can provide comparable results to a 2D model. The 1D+ schematization can improve accuracy while keeping the benefits of high-speed simulation and low requirements of input DEM data, but the method's suitability is limited by the channel properties. PMID:25687259

  5. The 2-D simulations of the NRL (Naval Research Laboratory) laser experiment

    NASA Astrophysics Data System (ADS)

    Lyon, J. G.

    1985-05-01

    Two-dimensional gas-dynamic simulations of the NRL laser experiment have been performed to study the formation of aneurysms in the blast wave and to study the formation of structure internal to the blast front itself. In one set of simulations the debris shell was perturbed sinusoidally in mass and position and also perturbed to mimic the action of a slow jet of material leaving the target at slower speeds than the bulk of the debris. In all cases the blast wave remained stable to any aneurysm-like instability. Internal structure, however, was quite easily produced and grew as a function of time. In the other set of simulations the effect of a pre-heated channel upon the propagation of the blast wave was examined. Bulges in the blast wave shock front were produced in these simulations that could be the beginning of the aneurysm phenomenon, but the preheated channel by itself appears to be insufficient to produce the observed aneurysm.

  6. A convergent 2D finite-difference scheme for the Dirac–Poisson system and the simulation of graphene

    SciTech Connect

    Brinkman, D.; Heitzinger, C.; Markowich, P.A.

    2014-01-15

    We present a convergent finite-difference scheme of second order in both space and time for the 2D electromagnetic Dirac equation. We apply this method in the self-consistent Dirac–Poisson system to the simulation of graphene. The model is justified for low energies, where the particles have wave vectors sufficiently close to the Dirac points. In particular, we demonstrate that our method can be used to calculate solutions of the Dirac–Poisson system where potentials act as beam splitters or Veselago lenses.

  7. Simulation with cells in vitro of tamoxifen treatment in premenopausal breast cancer patients with different CYP2D6 genotypes

    PubMed Central

    Maximov, Philipp Y; McDaniel, Russell E; Fernandes, Daphne J; Korostyshevskiy, Valeriy R; Bhatta, Puspanjali; Mürdter, Thomas E; Flockhart, David A; Jordan, V Craig

    2014-01-01

    Background and Purpose Tamoxifen is a prodrug that is metabolically activated by 4-hydroxylation to the potent primary metabolite 4-hydroxytamoxifen (4OHT) or via another primary metabolite N-desmethyltamoxifen (NDMTAM) to a biologically active secondary metabolite endoxifen through a cytochrome P450 2D6 variant system (CYP2D6). To elucidate the mechanism of action of tamoxifen and the importance of endoxifen for its effect, we determined the anti-oestrogenic efficacy of tamoxifen and its metabolites, including endoxifen, at concentrations corresponding to serum levels measured in breast cancer patients with various CYP2D6 genotypes (simulating tamoxifen treatment). Experimental Approach The biological effects of tamoxifen and its metabolites on cell growth and oestrogen-responsive gene modulation were evaluated in a panel of oestrogen receptor-positive breast cancer cell lines. Actual clinical levels of tamoxifen metabolites in breast cancer patients were used in vitro along with actual levels of oestrogens observed in premenopausal patients taking tamoxifen. Key Results Tamoxifen and its primary metabolites (4OHT and NDMTAM) only partially inhibited the stimulant effects of oestrogen on cells. The addition of endoxifen at concentrations corresponding to different CYP2D6 genotypes was found to enhance the anti-oestrogenic effect of tamoxifen and its metabolites with an efficacy that correlated with the concentration of endoxifen; at concentrations corresponding to the extensive metabolizer genotype it further inhibited the actions of oestrogen. In contrast, lower concentrations of endoxifen (intermediate and poor metabolizers) had little or no anti-oestrogenic effects. Conclusions and Implications Endoxifen may be a clinically relevant metabolite in premenopausal patients as it provides additional anti-oestrogenic actions during tamoxifen treatment. PMID:25073551

  8. Reliability of astrophysical jet simulations in 2D. On inter-code reliability and numerical convergence

    NASA Astrophysics Data System (ADS)

    Krause, M.; Camenzind, M.

    2001-12-01

    In the present paper, we examine the convergence behavior and inter-code reliability of astrophysical jet simulations in axial symmetry. We consider both pure hydrodynamic jets and jets with a dynamically significant magnetic field. The setups were chosen to match the setups of two other publications, and recomputed with the MHD code NIRVANA. We show that NIRVANA and the two other codes give comparable, but not identical results. We explain the differences by the different application of artificial viscosity in the three codes and numerical details, which can be summarized in a resolution effect, in the case without magnetic field: NIRVANA turns out to be a fair code of medium efficiency. It needs approximately twice the resolution as the code by Lind (Lind et al. 1989) and half the resolution as the code by Kössl (Kössl & Müller 1988). We find that some global properties of a hydrodynamical jet simulation, like e.g. the bow shock velocity, converge at 100 points per beam radius (ppb) with NIRVANA. The situation is quite different after switching on the toroidal magnetic field: in this case, global properties converge even at 10 ppb. In both cases, details of the inner jet structure and especially the terminal shock region are still insufficiently resolved, even at our highest resolution of 70 ppb in the magnetized case and 400 ppb for the pure hydrodynamic jet. The magnetized jet even suffers from a fatal retreat of the Mach disk towards the inflow boundary, which indicates that this simulation does not converge, in the end. This is also in definite disagreement with earlier simulations, and challenges further studies of the problem with other codes. In the case of our highest resolution simulation, we can report two new features: first, small scale Kelvin-Helmholtz instabilities are excited at the contact discontinuity next to the jet head. This slows down the development of the long wavelength Kelvin-Helmholtz instability and its turbulent cascade to smaller

  9. 2D simulations based on general time-dependent reciprocal relation for LFEIT.

    PubMed

    Karadas, Mursel; Gencer, Nevzat Guneri

    2015-08-01

    Lorentz field electrical impedance tomography (LFEIT) is a newly proposed technique for imaging the conductivity of the tissues by measuring the electromagnetic induction under the ultrasound pressure field. In this paper, the theory and numerical simulations of the LFEIT are reported based on the general time dependent formulation. In LFEIT, a phased array ultrasound probe is used to introduce a current distribution inside a conductive body. The velocity current occurs, due to the movement of the conductive particles under a static magnetic field. In order to sense this current, a receiver coil configuration that surrounds the volume conductor is utilized. Finite Element Method (FEM) is used to carry out the simulations of LFEIT. It is shown that, LFEIT can be used to reconstruct the conductivity even up to 50% perturbation in the initial conductivity distribution. PMID:26736569

  10. Mixed-RKDG Finite Element Methods for the 2-D Hydrodynamic Model for Semiconductor Device Simulation

    DOE PAGESBeta

    Chen, Zhangxin; Cockburn, Bernardo; Jerome, Joseph W.; Shu, Chi-Wang

    1995-01-01

    In this paper we introduce a new method for numerically solving the equations of the hydrodynamic model for semiconductor devices in two space dimensions. The method combines a standard mixed finite element method, used to obtain directly an approximation to the electric field, with the so-called Runge-Kutta Discontinuous Galerkin (RKDG) method, originally devised for numerically solving multi-dimensional hyperbolic systems of conservation laws, which is applied here to the convective part of the equations. Numerical simulations showing the performance of the new method are displayed, and the results compared with those obtained by using Essentially Nonoscillatory (ENO) finite difference schemes. Frommore » the perspective of device modeling, these methods are robust, since they are capable of encompassing broad parameter ranges, including those for which shock formation is possible. The simulations presented here are for Gallium Arsenide at room temperature, but we have tested them much more generally with considerable success.« less

  11. A mathematical model for a didactic device able to simulate a 2D Newtonian gravitational field

    NASA Astrophysics Data System (ADS)

    De Marchi, Fabrizio

    2015-01-01

    In this paper we propose a mathematical model to describe a theoretical device able to simulate an inverse-square force on a test mass moving on a horizontal plane. We use two pulleys, a counterweight, a wire and a smooth rail, in addition to the test mass. The tension of the wire (i.e. the attractive force on the test mass) is determined by the position of a counterweight free to move on a rail placed under the plane. The profile of the rail is calculated in order to obtain the required Newtonian force. Details of this calculation are reported in the paper, and numerical simulations are provided in order to investigate the stability of the orbits under the effect of the main friction forces and other perturbative effects. This work points out that there are some criticalities intrinsic to the apparatus and gives some suggestions about how to minimize their impact.

  12. Seismic wavefield propagation in 2D anisotropic media: Ray theory versus wave-equation simulation

    NASA Astrophysics Data System (ADS)

    Bai, Chao-ying; Hu, Guang-yi; Zhang, Yan-teng; Li, Zhong-sheng

    2014-05-01

    Despite the ray theory that is based on the high frequency assumption of the elastic wave-equation, the ray theory and the wave-equation simulation methods should be mutually proof of each other and hence jointly developed, but in fact parallel independent progressively. For this reason, in this paper we try an alternative way to mutually verify and test the computational accuracy and the solution correctness of both the ray theory (the multistage irregular shortest-path method) and the wave-equation simulation method (both the staggered finite difference method and the pseudo-spectral method) in anisotropic VTI and TTI media. Through the analysis and comparison of wavefield snapshot, common source gather profile and synthetic seismogram, it is able not only to verify the accuracy and correctness of each of the methods at least for kinematic features, but also to thoroughly understand the kinematic and dynamic features of the wave propagation in anisotropic media. The results show that both the staggered finite difference method and the pseudo-spectral method are able to yield the same results even for complex anisotropic media (such as a fault model); the multistage irregular shortest-path method is capable of predicting similar kinematic features as the wave-equation simulation method does, which can be used to mutually test each other for methodology accuracy and solution correctness. In addition, with the aid of the ray tracing results, it is easy to identify the multi-phases (or multiples) in the wavefield snapshot, common source point gather seismic section and synthetic seismogram predicted by the wave-equation simulation method, which is a key issue for later seismic application.

  13. 2-D transmitral flows simulation by means of the immersed boundary method on unstructured grids

    NASA Astrophysics Data System (ADS)

    Denaro, F. M.; Sarghini, F.

    2002-04-01

    Interaction between computational fluid dynamics and clinical researches recently allowed a deeper understanding of the physiology of complex phenomena involving cardio-vascular mechanisms. The aim of this paper is to develop a simplified numerical model based on the Immersed Boundary Method and to perform numerical simulations in order to study the cardiac diastolic phase during which the left ventricle is filled with blood flowing from the atrium throughout the mitral valve. As one of the diagnostic problems to be faced by clinicians is the lack of a univocal definition of the diastolic performance from the velocity measurements obtained by Eco-Doppler techniques, numerical simulations are supposed to provide an insight both into the physics of the diastole and into the interpretation of experimental data. An innovative application of the Immersed Boundary Method on unstructured grids is presented, fulfilling accuracy requirements related to the development of a thin boundary layer along the moving immersed boundary. It appears that this coupling between unstructured meshes and the Immersed Boundary Method is a promising technique when a wide range of spatial scales is involved together with a moving boundary. Numerical simulations are performed in a range of physiological parameters and a qualitative comparison with experimental data is presented, in order to demonstrate that, despite the simplified model, the main physiological characteristics of the diastole are well represented. Copyright

  14. Comparisons between tokamak fueling of gas puffing and supersonic molecular beam injection in 2D simulations

    SciTech Connect

    Zhou, Y. L.; Wang, Z. H.; Xu, X. Q.; Li, H. D.; Feng, H.; Sun, W. G.

    2015-01-15

    Plasma fueling with high efficiency and deep injection is very important to enable fusion power performance requirements. It is a powerful and efficient way to study neutral transport dynamics and find methods of improving the fueling performance by doing large scale simulations. Two basic fueling methods, gas puffing (GP) and supersonic molecular beam injection (SMBI), are simulated and compared in realistic divertor geometry of the HL-2A tokamak with a newly developed module, named trans-neut, within the framework of BOUT++ boundary plasma turbulence code [Z. H. Wang et al., Nucl. Fusion 54, 043019 (2014)]. The physical model includes plasma density, heat and momentum transport equations along with neutral density, and momentum transport equations. Transport dynamics and profile evolutions of both plasma and neutrals are simulated and compared between GP and SMBI in both poloidal and radial directions, which are quite different from one and the other. It finds that the neutrals can penetrate about four centimeters inside the last closed (magnetic) flux surface during SMBI, while they are all deposited outside of the LCF during GP. It is the radial convection and larger inflowing flux which lead to the deeper penetration depth of SMBI and higher fueling efficiency compared to GP.

  15. Comparisons between tokamak fueling of gas puffing and supersonic molecular beam injection in 2D simulations

    DOE PAGESBeta

    Zhou, Y. L.; Wang, Z. H.; Xu, X. Q.; Li, H. D.; Feng, H.; Sun, W. G.

    2015-01-09

    Plasma fueling with high efficiency and deep injection is very important to enable fusion power performance requirements. It is a powerful and efficient way to study neutral transport dynamics and find methods of improving the fueling performance by doing large scale simulations. Furthermore, two basic fueling methods, gas puffing (GP) and supersonic molecular beam injection (SMBI), are simulated and compared in realistic divertor geometry of the HL-2A tokamak with a newly developed module, named trans-neut, within the framework of BOUT++ boundary plasma turbulence code [Z. H. Wang et al., Nucl. Fusion 54, 043019 (2014)]. The physical model includes plasma density,more » heat and momentum transport equations along with neutral density, and momentum transport equations. In transport dynamics and profile evolutions of both plasma and neutrals are simulated and compared between GP and SMBI in both poloidal and radial directions, which are quite different from one and the other. It finds that the neutrals can penetrate about four centimeters inside the last closed (magnetic) flux surface during SMBI, while they are all deposited outside of the LCF during GP. Moreover, it is the radial convection and larger inflowing flux which lead to the deeper penetration depth of SMBI and higher fueling efficiency compared to GP.« less

  16. A GPU Simulation Tool for Training and Optimisation in 2D Digital X-Ray Imaging

    PubMed Central

    Gallio, Elena; Rampado, Osvaldo; Gianaria, Elena; Bianchi, Silvio Diego; Ropolo, Roberto

    2015-01-01

    Conventional radiology is performed by means of digital detectors, with various types of technology and different performance in terms of efficiency and image quality. Following the arrival of a new digital detector in a radiology department, all the staff involved should adapt the procedure parameters to the properties of the detector, in order to achieve an optimal result in terms of correct diagnostic information and minimum radiation risks for the patient. The aim of this study was to develop and validate a software capable of simulating a digital X-ray imaging system, using graphics processing unit computing. All radiological image components were implemented in this application: an X-ray tube with primary beam, a virtual patient, noise, scatter radiation, a grid and a digital detector. Three different digital detectors (two digital radiography and a computed radiography systems) were implemented. In order to validate the software, we carried out a quantitative comparison of geometrical and anthropomorphic phantom simulated images with those acquired. In terms of average pixel values, the maximum differences were below 15%, while the noise values were in agreement with a maximum difference of 20%. The relative trends of contrast to noise ratio versus beam energy and intensity were well simulated. Total calculation times were below 3 seconds for clinical images with pixel size of actual dimensions less than 0.2 mm. The application proved to be efficient and realistic. Short calculation times and the accuracy of the results obtained make this software a useful tool for training operators and dose optimisation studies. PMID:26545097

  17. A GPU Simulation Tool for Training and Optimisation in 2D Digital X-Ray Imaging.

    PubMed

    Gallio, Elena; Rampado, Osvaldo; Gianaria, Elena; Bianchi, Silvio Diego; Ropolo, Roberto

    2015-01-01

    Conventional radiology is performed by means of digital detectors, with various types of technology and different performance in terms of efficiency and image quality. Following the arrival of a new digital detector in a radiology department, all the staff involved should adapt the procedure parameters to the properties of the detector, in order to achieve an optimal result in terms of correct diagnostic information and minimum radiation risks for the patient. The aim of this study was to develop and validate a software capable of simulating a digital X-ray imaging system, using graphics processing unit computing. All radiological image components were implemented in this application: an X-ray tube with primary beam, a virtual patient, noise, scatter radiation, a grid and a digital detector. Three different digital detectors (two digital radiography and a computed radiography systems) were implemented. In order to validate the software, we carried out a quantitative comparison of geometrical and anthropomorphic phantom simulated images with those acquired. In terms of average pixel values, the maximum differences were below 15%, while the noise values were in agreement with a maximum difference of 20%. The relative trends of contrast to noise ratio versus beam energy and intensity were well simulated. Total calculation times were below 3 seconds for clinical images with pixel size of actual dimensions less than 0.2 mm. The application proved to be efficient and realistic. Short calculation times and the accuracy of the results obtained make this software a useful tool for training operators and dose optimisation studies. PMID:26545097

  18. 2D fluid simulations of discharges at atmospheric pressure in reactive gas mixtures

    NASA Astrophysics Data System (ADS)

    Bourdon, Anne

    2015-09-01

    Since a few years, low-temperature atmospheric pressure discharges have received a considerable interest as they efficiently produce many reactive chemical species at a low energy cost. This potential is of great interest for a wide range of applications as plasma assisted combustion or biomedical applications. Then, in current simulations of atmospheric pressure discharges, there is the need to take into account detailed kinetic schemes. It is interesting to note that in some conditions, the kinetics of the discharge may play a role on the discharge dynamics itself. To illustrate this, we consider the case of the propagation of He-N2 discharges in long capillary tubes, studied for the development of medical devices for endoscopic applications. Simulation results put forward that the discharge dynamics and structure depend on the amount of N2 in the He-N2 mixture. In particular, as the amount of N2 admixture increases, the discharge propagation velocity in the tube increases, reaches a maximum for about 0 . 1 % of N2 and then decreases, in agreement with experiments. For applications as plasma assisted combustion with nanosecond repetitively pulsed discharges, there is the need to handle the very different timescales of the nanosecond discharge with the much longer (micro to millisecond) timescales of combustion processes. This is challenging from a computational point of view. It is also important to better understand the coupling of the plasma induced chemistry and the gas heating. To illustrate this, we present the simulation of the flame ignition in lean mixtures by a nanosecond pulsed discharge between two point electrodes. In particular, among the different discharge regimes of nanosecond repetitively pulsed discharges, a ``spark'' regime has been put forward in the experiments, with an ultra-fast local heating of the gas. For other discharge regimes, the gas heating is much weaker. We have simulated the nanosecond spark regime and have observed shock waves

  19. Real-time 2D floating-point fast Fourier transforms for seeker simulation

    NASA Astrophysics Data System (ADS)

    Chamberlain, Richard; Lord, Eric; Shand, David J.

    2002-07-01

    The floating point Fast Fourier Transform (FFT) is one of the most useful basic functions available to the image and signal processing engineer allowing many complex and detailed special functions to be implemented more simply in the frequency domain. In the Hardware-in-the-Loop field an image transformed using FFT would allow the designer to think about accurate frequency based simulation of seeker lens effects, motion blur, detector transfer functions and much more. Unfortunately, the transform requires many hundreds of thousands or millions of floating point operations on a single modest sized image making it impractical for realtime Hardware-in-the-Loop systems. .until now. This paper outlines the development, by Nallatech, of an FPGA based IEEE floating point core. It traces the subsequent use of this core to develop a full 256 X 256 FFT and filter process implemented on COTS hardware at frame rates up to 150Hz. This transform can be demonstrated to model optical transfer functions at a far greater accuracy than the current spatial models. Other applications and extensions of this technique will be discussed such as filtering for image tracking algorithms and in the simulation of radar processing in the frequency domain.

  20. Quantum simulation of a heterojunction vertical tunnel FET based on 2D transition metal dichalcogenides

    NASA Astrophysics Data System (ADS)

    Cao, Jiang; Cresti, Alessandro; Esseni, David; Pala, Marco

    2016-02-01

    We simulate a band-to-band tunneling field-effect transistor based on a vertical heterojunction of single-layer MoS2 and WTe2, by exploiting the non-equilibrium Green's function method and including electron-phonon scattering. For both in-plane and out-of-plane transport, we attempt to calibrate out models to the few available experimental results. We focus on the role of chemical doping and back-gate biasing, and investigate the off-state physics of this device by analyzing the influence of the top-gate geometrical alignment on the device performance. The device scalability as a function of gate length is also studied. Finally, we present two metrics for the switching delay and energy of the device. Our simulations indicate that vertical field-effect transistors based on transition metal dichalcogenides can provide very small values of sub-threshold swing when properly designed in terms of doping concentration and top-gate extension length.

  1. Gyrokinetic simulations of 2D magnetic reconnection turbulence in guide fields

    NASA Astrophysics Data System (ADS)

    Terry, P. W.; Pueschel, M. J.; Jenko, F.; Zweibel, E.; Zhdankin, V.; Told, D.

    2012-10-01

    Following the analyses in [M.J. Pueschel et al., Phys. Plasmas 18, 112102 (2011)], a study of turbulence in driven reconnection is commenced, with a sinusoidal current sheet providing the drive through a Krook-type operator in a bi-periodic box. Simulations with the Gene code cover all relevant physical parameters, allowing for encompassing comparisons with expectations from linear simulations. A central observed feature are coherent circular current structures which may be identified as plasmoids. These objects move randomly in the plane perpendicular to the guide field, and may either disappear again after some time or instead merge with one another---the setup can thus be described as turbulence driven by reconnection, but simultaneously creating its own reconnection. Such merger events are associated with large bursts in the heating rate jE, and display strong non-Maxwellian components of the distribution function in parallel velocity space. The plasmoid energetics are studied, as are their ability to produce populations of fast particles. Statistics of such populations are used to facilitate direct comparisons with astrophysical scenarios of energetic particle production.

  2. Quantitative comparisons between experimentally measured 2-D carbon radiation and Monte Carlo impurity (MCI) code simulations

    SciTech Connect

    Evans, T.E.; Leonard, A.W.; West, W.P.; Finkenthal, D.F.; Fenstermacher, M.E.; Porter, G.D.

    1998-08-01

    Experimentally measured carbon line emissions and total radiated power distributions from the DIII-D divertor and Scrape-Off Layer (SOL) are compared to those calculated with the Monte Carlo Impurity (MCI) model. A UEDGE background plasma is used in MCI with the Roth and Garcia-Rosales (RG-R) chemical sputtering model and/or one of six physical sputtering models. While results from these simulations do not reproduce all of the features seen in the experimentally measured radiation patterns, the total radiated power calculated in MCI is in relatively good agreement with that measured by the DIII-D bolometric system when the Smith78 physical sputtering model is coupled to RG-R chemical sputtering in an unaltered UEDGE plasma. Alternatively, MCI simulations done with UEDGE background ion temperatures along the divertor target plates adjusted to better match those measured in the experiment resulted in three physical sputtering models which when coupled to the RG-R model gave a total radiated power that was within 10% of measured value.

  3. The cone penetration test and 2D imaging resistivity as tools to simulate the distribution of hydrocarbons in soil

    NASA Astrophysics Data System (ADS)

    Pérez-Corona, M.; García, J. A.; Taller, G.; Polgár, D.; Bustos, E.; Plank, Z.

    2016-02-01

    The purpose of geophysical electrical surveys is to determine the subsurface resistivity distribution by making measurements on the ground surface. From these measurements, the true resistivity of the subsurface can be estimated. The ground resistivity is related to various geological parameters, such as the mineral and fluid content, porosity and degree of water saturation in the rock. Electrical resistivity surveys have been used for many decades in hydrogeological, mining and geotechnical investigations. More recently, they have been used for environmental surveys. To obtain a more accurate subsurface model than is possible with a simple 1-D model, a more complex model must be used. In a 2-D model, the resistivity values are allowed to vary in one horizontal direction (usually referred to as the x direction) but are assumed to be constant in the other horizontal (the y) direction. A more realistic model would be a fully 3-D model where the resistivity values are allowed to change in all three directions. In this research, a simulation of the cone penetration test and 2D imaging resistivity are used as tools to simulate the distribution of hydrocarbons in soil.

  4. SIMULATION REAL SCALE EXPERIMENT ON LEVEE BREACH USING 2D SHALLOW FLOW MODEL

    NASA Astrophysics Data System (ADS)

    Zenno, Hiroki; Iwasaki, Toshiki; Shimizu, Yasuyuki; Kimura, Ichiro

    Flood in rivers is a common disaster all over the world. If a levee breach happens, it sometimes causes a fatal disaster. In addition, many buildings, urban facilities, lifelines, etc. are seriously damaged. Detailed mechanism of a levee breach has not been clarified yet. Therefore, it is important to predict the collapsing process of riverbank and behavior of overtop flow for reducing damage. We applied a two-dimensional shallow flow computational model to levee breach phenomena caused by overflow and the performance of the model was elucidated. A calibration of the numerical model is made through the comparison with field experimental data. Recently, a real-scale experiment on a levee breach was carried out at the Chiyoda Experimental Channel in Hokkaido, Japan. We performed the computation under the same conditions in the experiment. The computational results showed the excellent performance for simulating levee breach phenomena.

  5. Simulating HFIR Core Thermal Hydraulics Using 3D-2D Model Coupling

    SciTech Connect

    Travis, Adam R; Freels, James D; Ekici, Kivanc

    2013-01-01

    A model utilizing interdimensional variable coupling is presented for simulating the thermal hydraulic interactions of the High Flux Isotope Reactor (HFIR) core at Oak Ridge National Laboratory (ORNL). The model s domain consists of a single, explicitly represented three-dimensional fuel plate and a simplified two-dimensional coolant channel slice. In simplifying the coolant channel, and thus the number of mesh points in which the Navier-Stokes equations must be solved, the computational cost and solution time are both greatly reduced. In order for the reduced-dimension coolant channel to interact with the explicitly represented fuel plate, however, interdimensional variable coupling must be enacted along all shared boundaries. The primary focus of this paper is in detailing the collection, storage, passage, and application of variables across this interdimensional interface. Comparisons are made showing the general speed-up associated with this simplified coupled model.

  6. A hierarchical lattice spring model to simulate the mechanics of 2-D materials-based composites

    NASA Astrophysics Data System (ADS)

    Brely, Lucas; Bosia, Federico; Pugno, Nicola

    2015-07-01

    In the field of engineering materials, strength and toughness are typically two mutually exclusive properties. Structural biological materials such as bone, tendon or dentin have resolved this conflict and show unprecedented damage tolerance, toughness and strength levels. The common feature of these materials is their hierarchical heterogeneous structure, which contributes to increased energy dissipation before failure occurring at different scale levels. These structural properties are the key to exceptional bioinspired material mechanical properties, in particular for nanocomposites. Here, we develop a numerical model in order to simulate the mechanisms involved in damage progression and energy dissipation at different size scales in nano- and macro-composites, which depend both on the heterogeneity of the material and on the type of hierarchical structure. Both these aspects have been incorporated into a 2-dimensional model based on a Lattice Spring Model, accounting for geometrical nonlinearities and including statistically-based fracture phenomena. The model has been validated by comparing numerical results to continuum and fracture mechanics results as well as finite elements simulations, and then employed to study how structural aspects impact on hierarchical composite material properties. Results obtained with the numerical code highlight the dependence of stress distributions on matrix properties and reinforcement dispersion, geometry and properties, and how failure of sacrificial elements is directly involved in the damage tolerance of the material. Thanks to the rapidly developing field of nanocomposite manufacture, it is already possible to artificially create materials with multi-scale hierarchical reinforcements. The developed code could be a valuable support in the design and optimization of these advanced materials, drawing inspiration and going beyond biological materials with exceptional mechanical properties.

  7. Ion Dynamics at a Rippled Quasi-parallel Shock: 2D Hybrid Simulations

    NASA Astrophysics Data System (ADS)

    Hao, Yufei; Lu, Quanming; Gao, Xinliang; Wang, Shui

    2016-05-01

    In this paper, two-dimensional hybrid simulations are performed to investigate ion dynamics at a rippled quasi-parallel shock. The results show that the ripples around the shock front are inherent structures of a quasi-parallel shock, and the re-formation of the shock is not synchronous along the surface of the shock front. By following the trajectories of the upstream ions, we find that these ions behave differently when they interact with the shock front at different positions along the shock surface. The upstream particles are transmitted more easily through the upper part of a ripple, and the corresponding bulk velocity downstream is larger, where a high-speed jet is formed. In the lower part of the ripple, the upstream particles tend to be reflected by the shock. Ions reflected by the shock may suffer multiple-stage acceleration when moving along the shock surface or trapped between the upstream waves and the shock front. Finally, these ions may escape further upstream or move downstream; therefore, superthermal ions can be found both upstream and downstream.

  8. Power production locality of bluff body flutter mills using fully coupled 2D direct numerical simulation

    NASA Astrophysics Data System (ADS)

    Kuhl, J. M.; Desjardin, P. E.

    2012-01-01

    Two-dimensional, fully coupled direct numerical simulations (DNS) are conducted to examine the local energy dynamics of a flexible cantilevered plate in the wake of a two-dimensional circular cylinder. The motion of the cantilevered plate is described using a finite element formulation and a fully compressible, finite volume Navier Stokes solver is used to compute the flow field. A sharp interface level set method is employed in conjunction with a ghost fluid method to describe the immersed boundaries of the bluff body and flexible plate. DNS is first conducted to validate the numerical methodology and compared with previous studies of flexible cantilevered plates and flow over bluff bodies; excellent agreement with previous results is observed. A newly defined power production/loss geometry metric is introduced based on surface curvature and plate velocity. The metric is found to be useful for determining which sections of the plate will produce energy based on curvature and deflection rate. Scatter plots and probability measures are presented showing a high correlation between the direction of energy transfer (i.e., to or from the plate) and the sign of the newly defined curvature-deflection-rate metric. The findings from this study suggest that a simple local geometry/kinematic based metric can be devised to aid in the development and design of flexible wind energy harvesting flutter mills.

  9. The Plasma Wake Downstream of Lunar Topographic Obstacles: Preliminary Results from 2D Particle Simulations

    NASA Technical Reports Server (NTRS)

    Zimmerman, Michael I.; Farrell, W. M.; Snubbs, T. J.; Halekas, J. S.

    2011-01-01

    Anticipating the plasma and electrical environments in permanently shadowed regions (PSRs) of the moon is critical in understanding local processes of space weathering, surface charging, surface chemistry, volatile production and trapping, exo-ion sputtering, and charged dust transport. In the present study, we have employed the open-source XOOPIC code [I] to investigate the effects of solar wind conditions and plasma-surface interactions on the electrical environment in PSRs through fully two-dimensional pattic1e-in-cell simulations. By direct analogy with current understanding of the global lunar wake (e.g., references) deep, near-terminator, shadowed craters are expected to produce plasma "mini-wakes" just leeward of the crater wall. The present results (e.g., Figure I) are in agreement with previous claims that hot electrons rush into the crater void ahead of the heavier ions, fanning a negative cloud of charge. Charge separation along the initial plasma-vacuum interface gives rise to an ambipolar electric field that subsequently accelerates ions into the void. However, the situation is complicated by the presence of the dynamic lunar surface, which develops an electric potential in response to local plasma currents (e.g., Figure Ia). In some regimes, wake structure is clearly affected by the presence of the charged crater floor as it seeks to achieve current balance (i.e. zero net current to the surface).

  10. KEEN and KEEPN wave simulations from 2D to 4D

    NASA Astrophysics Data System (ADS)

    Mehrenberger, Michel; Afeyan, Bedros; Larson, David; Crouseilles, Nicolas; Casas, Fernando; Faou, Erwan; Dodhy, Adila; Sonnendrucker, Eric; Shoucri, Magdi

    2015-11-01

    We show for well-driven KEEN (Kinetic Electrostatic Electron Nonlinear) waves and their analogs in pair plasmas KEEPN (Positron) waves, how the dynamics is captured in a variety of complimentary numerical approaches. Symplectic integration and quadrature node based techniques are deployed to achieve satisfactory results in the long time evolution of highly nonlinear, kinetic, non-stationary, self-organized structures in phase space. Fixed and composite velocity grid arbitrary-order interpolation approaches have advantages we highlight. Adaptivity to local phase space density morphological structures will be discussed starting within the framework of the Shape Function Kinetics (SFK) approach. Fine resolution in velocity only in the range affected by KEEN waves makes for more efficient simulations, especially in higher dimensions. We explore the parameter space of unequal electron and positron temperatures as well as the effects of a relative drift velocity in their initial conditions. Ponderomotively driven KEEPN waves have many novelties when compared to KEEN waves, such as double, staggered, vortex structures, which we highlight. Work supported by the AFOSR and OFES.

  11. Origin of energetic ions observed in the terrestrial ion foreshock : 2D full-particle simulations

    NASA Astrophysics Data System (ADS)

    Savoini, Philippe; Lembege, bertrand

    2016-04-01

    Collisionless shocks are well-known structures in astrophysical environments which dissipate bulk flow kinetic energy and accelerate large fraction of particle. Spacecrafts have firmly established the existence of the so-called terrestrial foreshock region magnetically connected to the shock and filled by two distinct populations in the quasi-perpendicular shock region (i.e. for 45r{ } ≤ quad θ Bn quad ≤ 90r{ }, where θ Bn is the angle between the shock normal and the upstream magnetic field) : (i) the field-aligned ion beams or `` FAB '' characterized by a gyrotropic distributionsout{,} and (ii) the gyro-phase bunched ions or `` GPB '' characterized by a NON gyrotropic distribution. The present work is based on the use of two dimensional PIC simulation of a curved shock and associated foreshock region where full curvature effects, time of flight effects and both electrons and ions dynamics are fully described by a self consistent approach. Our previous analysis (Savoini et Lembège, 2015) has evidenced that these two types of backstreaming populations can originate from the shock front itself without invoking any local diffusion by ion beam instabilities. Present results are focussed on individual ion trajectories and evidence that "FAB" population is injected into the foreshock mainly along the shock front whereas the "GPB" population penetrates more deeply the shock front. Such differences explain why the "FAB" population loses their gyro-phase coherency and become gyrotropic which is not the case for the "GPB". The impact of these different injection features on the energy gain for each ion population will be presented in détails. Savoini, P. and B. Lembège (2015), `` Production of nongyrotropic and gyrotropic backstreaming ion distributions in the quasi-perpendicular ion foreshock région '', J. Geophys. Res., 120, pp 7154-7171, doi = 10.1002/2015JA021018.

  12. Observation and simulation of heterogeneous 2D water and solute flow processes in ditch beds for subsequent catchment modelling

    NASA Astrophysics Data System (ADS)

    Dages, Cecile; Samouelian, Anatja; Lanoix, Marthe; Dollinger, Jeanne; Chakkour, Sara; Chovelon, Gabrielle; Trabelsi, Khouloud; Voltz, Marc

    2015-04-01

    Ditches are involved in the transfer of pesticide to surface and groundwaters (e.g. Louchart et al., 2001). Soil horizons underlying ditch beds may present specific soil characteristics compared to neighbouring field soils due to erosion/deposition processes, to the specific biological activities (rooting dynamic and animal habitat) in the ditches (e.g. Vaughan et al., 2008) and to management practices (burning, dredging, mowing,...). Moreover, in contrast to percolation processes in field soils that can be assumed to be mainly 1D vertical, those occurring in the ditch beds are by essence 2D or even 3D. Nevertheless, due to a lake of knowledge, these specific aspects of transfer within ditch beds are generally omitted for hydrological simulation at the catchment scale (Mottes et al., 2014). Accordingly, the aims of this study were i) to characterize subsurface solute transfer through ditch beds and ii) to determine equivalent hydraulic parameters of the ditch beds for use in catchment scale hydrological simulations. A complementary aim was to evaluate the error in predictions performed when percolation in ditches is assumed to be similar to that in the neighbouring field soil. First, bromide transfer experiments were performed on undisturbed soil column (15 cm long with a 15 cm inner-diameter), horizontally and vertically sampled within each soil horizon underlying a ditch bed and within the neighboring field. Columns were sampled at the Roujan catchment (Hérault, France), which belongs to the long term Mediterranean hydrological observatory OMERE (Voltz and Albergel, 2002). Second, for each column, a set of parameters was determined by inverse optimization with mobile-immobile or dual permeability models, with CXTFIT (Toride et al., 1999) or with HYDRUS (Simunek et al., 1998). Third, infiltration and percolation in the ditch was simulated by a 2D flow domain approach considering the 2D variation in hydraulic properties of the cross section of a ditch bed. Last

  13. Simulating the mobility of meteoric 10Be in the landscape through a coupled soil-hillslope model (Be2D)

    NASA Astrophysics Data System (ADS)

    Campforts, Benjamin; Vanacker, Veerle; Vanderborght, Jan; Baken, Stijn; Smolders, Erik; Govers, Gerard

    2016-04-01

    Meteoric 10Be allows for the quantification of vertical and lateral soil fluxes over long time scales (103-105 yr). However, the mobility of meteoric 10Be in the soil system makes a translation of meteoric 10Be inventories into erosion and deposition rates complex. Here, we present a spatially explicit 2D model simulating the behaviour of meteoric 10Be on a hillslope. The model consists of two parts. The first component deals with advective and diffusive mobility of meteoric 10Be within the soil profile, and the second component describes lateral soil and meteoric 10Be fluxes over the hillslope. Soil depth is calculated dynamically, accounting for soil production through weathering as well as downslope fluxes of soil due to creep, water and tillage erosion. Synthetic model simulations show that meteoric 10Be inventories can be related to erosion and deposition across a wide range of geomorphological and pedological settings. Our results also show that meteoric 10Be can be used as a tracer to detect human impact on soil fluxes for soils with a high affinity for meteoric 10Be. However, the quantification of vertical mobility is essential for a correct interpretation of the observed variations in meteoric 10Be profiles and inventories. Application of the Be2D model to natural conditions using data sets from the Southern Piedmont (Bacon et al., 2012) and Appalachian Mountains (Jungers et al., 2009; West et al., 2013) allows to reliably constrain parameter values. Good agreement between simulated and observed meteoric 10Be concentrations and inventories is obtained with realistic parameter values. Furthermore, our results provide detailed insights into the processes redistributing meteoric 10Be at the soil-hillslope scale.

  14. FireStem2D – A Two-Dimensional Heat Transfer Model for Simulating Tree Stem Injury in Fires

    PubMed Central

    Chatziefstratiou, Efthalia K.; Bohrer, Gil; Bova, Anthony S.; Subramanian, Ravishankar; Frasson, Renato P. M.; Scherzer, Amy; Butler, Bret W.; Dickinson, Matthew B.

    2013-01-01

    FireStem2D, a software tool for predicting tree stem heating and injury in forest fires, is a physically-based, two-dimensional model of stem thermodynamics that results from heating at the bark surface. It builds on an earlier one-dimensional model (FireStem) and provides improved capabilities for predicting fire-induced mortality and injury before a fire occurs by resolving stem moisture loss, temperatures through the stem, degree of bark charring, and necrotic depth around the stem. We present the results of numerical parameterization and model evaluation experiments for FireStem2D that simulate laboratory stem-heating experiments of 52 tree sections from 25 trees. We also conducted a set of virtual sensitivity analysis experiments to test the effects of unevenness of heating around the stem and with aboveground height using data from two studies: a low-intensity surface fire and a more intense crown fire. The model allows for improved understanding and prediction of the effects of wildland fire on injury and mortality of trees of different species and sizes. PMID:23894599

  15. Analysis of Highly-Resolved Simulations of 2-D Humps Toward Improvement of Second-Moment Closures

    NASA Technical Reports Server (NTRS)

    Jeyapaul, Elbert; Rumsey Christopher

    2013-01-01

    Fully resolved simulation data of flow separation over 2-D humps has been used to analyze the modeling terms in second-moment closures of the Reynolds-averaged Navier- Stokes equations. Existing models for the pressure-strain and dissipation terms have been analyzed using a priori calculations. All pressure-strain models are incorrect in the high-strain region near separation, although a better match is observed downstream, well into the separated-flow region. Near-wall inhomogeneity causes pressure-strain models to predict incorrect signs for the normal components close to the wall. In a posteriori computations, full Reynolds stress and explicit algebraic Reynolds stress models predict the separation point with varying degrees of success. However, as with one- and two-equation models, the separation bubble size is invariably over-predicted.

  16. SPH non-Newtonian Model for Ice Sheet and Ice Shelf Dynamics

    SciTech Connect

    Tartakovsky, Alexandre M.; Pan, Wenxiao; Monaghan, Joseph J.

    2012-07-07

    We propose a new three-dimensional smoothed particle hydrodynamics (SPH) non-Newtonian model to study coupled ice sheet and ice shelf dynamics. Most existing ice sheet numerical models use a grid-based Eulerian approach, and are usually restricted to shallow ice sheet and ice shelf approximations of the momentum conservation equation. SPH, a fully Lagrangian particle method, solves the full momentum conservation equation. SPH method also allows modeling of free-surface flows, large material deformation, and material fragmentation without employing complex front-tracking schemes, and does not require re-meshing. As a result, SPH codes are highly scalable. Numerical accuracy of the proposed SPH model is first verified by simulating a plane shear flow with a free surface and the propagation of a blob of ice along a horizontal surface. Next, the SPH model is used to investigate the grounding line dynamics of ice sheet/shelf. The steady position of the grounding line, obtained from our SPH simulations, is in good agreement with laboratory observations for a wide range of bedrock slopes, ice-to-fluid density ratios, and flux. We examine the effect of non-Newtonian behavior of ice on the grounding line dynamics. The non-Newtonian constitutive model is based on Glen's law for a creeping flow of a polycrystalline ice. Finally, we investigate the effect of a bedrock geometry on a steady-state position of the grounding line.

  17. 2D Numerical Model And Self-Consistent Particle-In-Cell Simulations Of Coherent Synchrotron Radiation

    NASA Astrophysics Data System (ADS)

    Kwan, Thomas; Huang, Chengkun; Carlsten, Bruce

    2012-10-01

    Understanding CSR effects in a bunch compressor requires accurate and self-consistent dynamical simulations accounting for the realistic beam shape and parameters, transient dynamics and possibly a material boundary. We first extend the well-known 1D CSR model into two dimensions and develop a simple numerical algorithm based on the Lienard-Wiechert formula for the electric field of a stiff beam. This numerical model includes the 2D spatial dependence of the field in the bending plane and is accurate for arbitrary beam energy. It also removes the singularity in space charge field presented in a 1D model. Good agreement is obtained with 1D CSR analytic [1] result for FEL related beam parameters but deviations are also found for low-energy or large spot size beams and off-axis fields. We also employ fully electromagnetic Particle-In-Cell (PIC) simulations for self-consistent CSR modeling. The relatively large numerical phase error and anisotropy in a standard PIC algorithm is improved with a high order Finite Difference Time Domain scheme. Detail self-consistent PIC simulations of the CSR fields and beam dynamics will be presented and discussed.

  18. Spectrum simulation of rough and nanostructured targets from their 2D and 3D image by Monte Carlo methods

    NASA Astrophysics Data System (ADS)

    Schiettekatte, François; Chicoine, Martin

    2016-03-01

    Corteo is a program that implements Monte Carlo (MC) method to simulate ion beam analysis (IBA) spectra of several techniques by following the ions trajectory until a sufficiently large fraction of them reach the detector to generate a spectrum. Hence, it fully accounts for effects such as multiple scattering (MS). Here, a version of Corteo is presented where the target can be a 2D or 3D image. This image can be derived from micrographs where the different compounds are identified, therefore bringing extra information into the solution of an IBA spectrum, and potentially significantly constraining the solution. The image intrinsically includes many details such as the actual surface or interfacial roughness, or actual nanostructures shape and distribution. This can for example lead to the unambiguous identification of structures stoichiometry in a layer, or at least to better constraints on their composition. Because MC computes in details the trajectory of the ions, it simulates accurately many of its aspects such as ions coming back into the target after leaving it (re-entry), as well as going through a variety of nanostructures shapes and orientations. We show how, for example, as the ions angle of incidence becomes shallower than the inclination distribution of a rough surface, this process tends to make the effective roughness smaller in a comparable 1D simulation (i.e. narrower thickness distribution in a comparable slab simulation). Also, in ordered nanostructures, target re-entry can lead to replications of a peak in a spectrum. In addition, bitmap description of the target can be used to simulate depth profiles such as those resulting from ion implantation, diffusion, and intermixing. Other improvements to Corteo include the possibility to interpolate the cross-section in angle-energy tables, and the generation of energy-depth maps.

  19. Efficient Neighborhood Search in SPH

    NASA Astrophysics Data System (ADS)

    Cruz Pérez, Juan Pablo; González Cervera, José Antonio

    2013-10-01

    One of the main problems found during the implementation of an N-body algorithm, is its inefficiency when the number of points to evaluate is increased. This is a consequence of the order O(N^2) of these methods. With this in mind, when we use the method of Smoothed Particle Hydrodynamics (SPH), it is necessary to find an algorithm that allows us to make the computation in an efficient way. The method presented in this article is of order O(N) , being more efficient as well as easy to implement, reducing the computing time.

  20. Simulating Dynamic Stall in a 2D VAWT: Modeling strategy, verification and validation with Particle Image Velocimetry data

    NASA Astrophysics Data System (ADS)

    Simão Ferreira, C. J.; Bijl, H.; van Bussel, G.; van Kuik, G.

    2007-07-01

    The implementation of wind energy conversion systems in the built environment renewed the interest and the research on Vertical Axis Wind Turbines (VAWT), which in this application present several advantages over Horizontal Axis Wind Turbines (HAWT). The VAWT has an inherent unsteady aerodynamic behavior due to the variation of angle of attack with the angle of rotation, perceived velocity and consequentially Reynolds number. The phenomenon of dynamic stall is then an intrinsic effect of the operation of a Vertical Axis Wind Turbine at low tip speed ratios, having a significant impact in both loads and power. The complexity of the unsteady aerodynamics of the VAWT makes it extremely attractive to be analyzed using Computational Fluid Dynamics (CFD) models, where an approximation of the continuity and momentum equations of the Navier-Stokes equations set is solved. The complexity of the problem and the need for new design approaches for VAWT for the built environment has driven the authors of this work to focus the research of CFD modeling of VAWT on: •comparing the results between commonly used turbulence models: URANS (Spalart-Allmaras and k-epsilon) and large eddy models (Large Eddy Simulation and Detached Eddy Simulation) •verifying the sensitivity of the model to its grid refinement (space and time), •evaluating the suitability of using Particle Image Velocimetry (PIV) experimental data for model validation. The 2D model created represents the middle section of a single bladed VAWT with infinite aspect ratio. The model simulates the experimental work of flow field measurement using Particle Image Velocimetry by Simão Ferreira et al for a single bladed VAWT. The results show the suitability of the PIV data for the validation of the model, the need for accurate simulation of the large eddies and the sensitivity of the model to grid refinement.

  1. 2D simulation of active species and ozone production in a multi-tip DC air corona discharge

    NASA Astrophysics Data System (ADS)

    Meziane, M.; Eichwald, O.; Sarrette, J. P.; Ducasse, O.; Yousfi, M.

    2011-11-01

    The present paper shows for the first time in the literature a complete 2D simulation of the ozone production in a DC positive multi-tip to plane corona discharge reactor crossed by a dry air flow at atmospheric pressure. The simulation is undertaken until 1 ms and involves tens of successive discharge and post-discharge phases. The air flow is stressed by several monofilament corona discharges generated by a maximum of four anodic tips distributed along the reactor. The nonstationary hydrodynamics model for reactive gas mixture is solved using the commercial FLUENT software. During each discharge phase, thermal and vibrational energies as well as densities of radical and metastable excited species are locally injected as source terms in the gas medium surrounding each tip. The chosen chemical model involves 10 neutral species reacting following 24 reactions. The obtained results allow us to follow the cartography of the temperature and the ozone production inside the corona reactor as a function of the number of high voltage anodic tips.

  2. 2D fluid-analytical simulation of electromagnetic effects in low pressure, high frequency electronegative capacitive discharges

    NASA Astrophysics Data System (ADS)

    Kawamura, E.; Lichtenberg, A. J.; Lieberman, M. A.; Marakhtanov, A. M.

    2016-06-01

    A fast 2D axisymmetric fluid-analytical multifrequency capacitively coupled plasma (CCP) reactor code is used to study center high nonuniformity in a low pressure electronegative chlorine discharge. In the code, a time-independent Helmholtz wave equation is used to solve for the capacitive fields in the linearized frequency domain. This eliminates the time dependence from the electromagnetic (EM) solve, greatly speeding up the simulations at the cost of neglecting higher harmonics. However, since the code allows up to three driving frequencies, we can add the two most important harmonics to the CCP simulations as the second and third input frequencies. The amplitude and phase of these harmonics are estimated by using a recently developed 1D radial nonlinear transmission line (TL) model of a highly asymmetric cylindrical discharge (Lieberman et al 2015 Plasma Sources Sci. Technol. 24 055011). We find that at higher applied frequencies, the higher harmonics contribute significantly to the center high nonuniformity due to their shorter plasma wavelengths.

  3. PC2D simulation and optimization of the selective emitter solar cells fabricated by screen printing phosphoric paste method

    NASA Astrophysics Data System (ADS)

    Jia, Xiaojie; Ai, Bin; Deng, Youjun; Xu, Xinxiang; Peng, Hua; Shen, Hui

    2015-08-01

    On the basis of perfect PC2D simulation to the measured current density vs voltage (J-V) curve of the best selective emitter (SE) solar cell fabricated by the CSG Company using the screen printing phosphoric paste method, we systematically investigated the effect of the parameters of gridline, base, selective emitter, back surface field (BSF) layer and surface recombination rate on performance of the SE solar cell. Among these parameters, we identified that the base minority carrier lifetime, the front and back surface recombination rate and the ratio of the sheet-resistance of heavily and lightly doped region are the four largest efficiency-affecting factors. If all the parameters have ideal values, the SE solar cell fabricated on a p-type monocrystalline silicon wafer can even obtain the efficiency of 20.45%. In addition, the simulation also shows that fine gridline combining dense gridline and increasing bus bar number while keeping the lower area ratio can offer the other ways to improve the efficiency.

  4. Simulations of P-SV wave scattering due to cracks by the 2-D finite difference method

    NASA Astrophysics Data System (ADS)

    Suzuki, Yuji; Shiina, Takahiro; Kawahara, Jun; Okamoto, Taro; Miyashita, Kaoru

    2013-12-01

    We simulate P-SV wave scattering by 2-D parallel cracks using the finite difference method (FDM). Here, special emphasis is put on simplicity; we apply a standard FDM (second-order velocity-stress scheme with a staggered grid) to media including traction-free, infinitesimally thin cracks, which are expressed in a simple manner. As an accuracy test of the present method, we calculate the displacement discontinuity along an isolated crack caused by harmonic waves using the method, which is compared with the corresponding results based on a reliable boundary integral equation method. The test resultantly indicates that the present method yields sufficient accuracy. As an application of this method, we also simulate wave propagation in media with randomly distributed cracks. We experimentally determine the attenuation and velocity dispersion induced by scattering from the synthetic seismograms, using a waveform averaging technique. It is shown that the results are well explained by a theory based on the Foldy approximation, if the crack density is sufficiently low. The theory appears valid with a crack density up to at least 0.1 for SV wave incidence, whereas the validity limit appears lower for P wave incidence.

  5. Debris Flow Simulation using FLO-2D on the 2004 Landslide Area of Real, General Nakar, and Infanta, Philippines

    NASA Astrophysics Data System (ADS)

    Llanes, F.; dela Resma, M.; Ferrer, P.; Realino, V.; Aquino, D. T.; Eco, R. C.; Lagmay, A.

    2013-12-01

    From November 14 to December 3, 2004, Luzon Island was ravaged by 4 successive typhoons: Typhoon Mufia, Tropical Storm Merbok, Tropical Depression Winnie, and Super Typhoon Nanmadol. Tropical Depression Winnie was the most destructive of the four when it triggered landslides on November 29 that devastated the municipalities of Infanta, General Nakar, and Real in Quezon Province, southeast Luzon. Winnie formed east of Central Luzon on November 27 before it moved west-northwestward over southeastern Luzon on November 29. A total of 1,068 lives were lost and more than USD 170 million worth of damages to crops and infrastructure were incurred from the landslides triggered by Typhoon Winnie on November 29 and the flooding caused by the 4 typhoons. FLO-2D, a flood routing software for generating flood and debris flow hazard maps, was utilized to simulate the debris flows that could potentially affect the study area. Based from the rainfall intensity-duration-frequency analysis, the cumulative rainfall from typhoon Winnie on November 29 which was approximately 342 mm over a 9-hour period was classified within a 100-year return period. The Infanta station of the Philippine Atmospheric Geophysical and Astronomical Services Administration (PAGASA) was no longer able to measure the amount of rainfall after this period because the rain gauge in that station was washed away by floods. Rainfall data with a 100-year return period was simulated over the watersheds delineated from a SAR-derived digital elevation model. The resulting debris flow hazard map was compared with results from field investigation and previous studies made on the landslide event. The simulation identified 22 barangays (villages) with a total of 45,155 people at risk of turbulent flow and flooding.

  6. A nonlocal finite difference scheme for simulation of wave propagation in 2D models with reduced numerical dispersion

    NASA Astrophysics Data System (ADS)

    Martowicz, A.; Ruzzene, M.; Staszewski, W. J.; Rimoli, J. J.; Uhl, T.

    2014-03-01

    The work deals with the reduction of numerical dispersion in simulations of wave propagation in solids. The phenomenon of numerical dispersion naturally results from time and spatial discretization present in a numerical model of mechanical continuum. Although discretization itself makes possible to model wave propagation in structures with complicated geometries and made of different materials, it inevitably causes simulation errors when improper time and length scales are chosen for the simulations domains. Therefore, by definition, any characteristic parameter for spatial and time resolution must create limitations on maximal wavenumber and frequency for a numerical model. It should be however noted that expected increase of the model quality and its functionality in terms of affordable wavenumbers, frequencies and speeds should not be achieved merely by denser mesh and reduced time integration step. The computational cost would be simply unacceptable. The authors present a nonlocal finite difference scheme with the coefficients calculated applying a Fourier series, which allows for considerable reduction of numerical dispersion. There are presented the results of analyses for 2D models, with isotropic and anisotropic materials, fulfilling the planar stress state. Reduced numerical dispersion is shown in the dispersion surfaces for longitudinal and shear waves propagating for different directions with respect to the mesh orientation and without dramatic increase of required number of nonlocal interactions. A case with the propagation of longitudinal wave in composite material is studied with given referential solution of the initial value problem for verification of the time-domain outcomes. The work gives a perspective of modeling of any type of real material dispersion according to measurements and with assumed accuracy.

  7. The effect of bone fracture unevenness on ultrasound axial transmission measurements: A pilot 2D simulation study

    NASA Astrophysics Data System (ADS)

    Machado, Christiano B.; Pereira, Wagner C. A.; Padilla, Frédéric; Laugier, Pascal

    2012-05-01

    Ultrasound axial transmission (UAT) has been proposed to the diagnosis and follow-up of fracture healing. Some researchers have already pointed out the influence of fracture length, geometry and callus composition on the ultrasound time-of-flight and attenuation, with experimental and simulation studies. The aim of this work was to develop a pilot study on the effect of bone fracture unevenness on UAT measurements. Two-dimensional (2D) numerical simulations of ultrasound wave propagation were run using a custom-made finite-difference time domain code (SimSonic2D). Numerical models were composed of two 4-mm thick bone plates, with fracture lengths varying from 0 to 4 mm. For each case, an upward (UWun) and downward (DWun) unevenness of 0.5, 1.0 and 1.5 mm was implemented in the second plate. The 1-MHz emitter and receptor transducers were placed at 40 mm from each other, 20 mm apart from the center fracture. Two configurations were considered: 1.5 mm above the plates (for the 0-mm unevenness case) and transducers in contact with bone plate. For each situation, the time-of-flight of the first arriving signal (TOFFAS) and the FAS energy amplitude loss measured by the sound pressure level (SPLFAS) were computed. Results showed that there was a linear increase in TOFFAS with increasing fracture length, and a decrease of SPLFAS with the presence of a discontinuity. TOFFAS values were decreased with UWun (-0.87 μs for UWun = 1.5 mm), and increased with DWun (+0.99 μs for DWun = 1.5 mm). The SPLFAS increased with both UWun (+3.54 dB for UWun = 1.5 mm) and DWun (+8.15 dB for DWun = 1.5 mm). Both parameters showed the same variability. When transducers were put in contact with bone surface, fracture unevenness had no influence on TOF and SPL estimates. Previous works have already demonstrated that a fracture of 3 mm can increase TOFFAS in an order of 1 μs. Considering these preliminary results, it can be concluded that, although the variable fracture unevenness (until 1

  8. On the parameterization of 1D vertical mixing in planetary atmospheres: insights from 2D and 3D simulations

    NASA Astrophysics Data System (ADS)

    Zhang, Xi; Showman, Adam P.

    2015-11-01

    Most of the current atmospheric chemistry models for planets (e.g., Krasnopolsky & Parshev 1981; Yung & Demore 1982; Yung, Allen & Pinto 1984; Lavvas et al. 2008; Zhang et al. 2012) and exoplanets (e.g., Line, Liang & Yung 2010; Moses et al. 2011; Hu & Seager 2014) adopt a one-dimensional (1D) chemical-diffusion approach in the vertical coordinate. Although only a crude approximation, these 1D models have succeeded in explaining the global-averaged vertical profiles of many chemical species in observations. One of the important assumptions of these models is that all chemical species are transported via the same eddy diffusion profile--that is, the assumption is made that the eddy diffusivity is a fundamental property of the dynamics alone, and does not depend on the chemistry. Here we show that, as also noticed in the Earth community (e.g., Holton 1986), this “homogenous eddy diffusion” assumption generally breaks down. We first show analytically why the 1D eddy diffusivity must generally depend both on the horizontal eddy mixing and the chemical lifetime of the species. This implies that the long-lived species and short-lived chemical species will generally exhibit different eddy diffusion profiles, even in a given atmosphere with identical dynamics. Next, we present tracer-transport simulations in a 2D chemical-diffusion-advection model (Shia et al. 1989; Zhang, Shia & Yung 2013) and a 3D general circulation model (MITgcm, e.g., Liu & Showman 2013), for both rapid-rotating planets and tidally-locked exoplanets, to further explore the effect of chemical timescales on the eddy diffusivity. From the 2D and 3D simulation outputs, we derive effective 1D eddy diffusivity profiles for chemical tracers exhibiting a range of chemical timescales. We show that the derived eddy diffusivity can depend strongly on the horizontal eddy mixing and chemistry, although the dependences are more complex than the analytic model predicts. Overall, these results suggest that

  9. A parallel TreeSPH code for galaxy formation

    NASA Astrophysics Data System (ADS)

    Lia, Cesario; Carraro, Giovanni

    2000-05-01

    We describe a new implementation of a parallel TreeSPH code with the aim of simulating galaxy formation and evolution. The code has been parallelized using shmem, a Cray proprietary library to handle communications between the 256 processors of the Silicon Graphics T3E massively parallel supercomputer hosted by the Cineca Super-computing Center (Bologna, Italy).1 The code combines the smoothed particle hydrodynamics (SPH) method for solving hydrodynamical equations with the popular Barnes & Hut tree-code to perform gravity calculation with an N×logN scaling, and it is based on the scalar TreeSPH code developed by Carraro et al. Parallelization is achieved by distributing particles along processors according to a workload criterion. Benchmarks, in terms of load balance and scalability, of the code are analysed and critically discussed against the adiabatic collapse of an isothermal gas sphere test using 2×104 particles on 8 processors. The code results balance at more than the 95per cent level. Increasing the number of processors, the load balance slightly worsens. The deviation from perfect scalability for increasing number of processors is almost negligible up to 32 processors. Finally, we present a simulation of the formation of an X-ray galaxy cluster in a flat cold dark matter cosmology, using 2×105 particles and 32 processors, and compare our results with Evrard's P3M-SPH simulations. Additionally we have incorporated radiative cooling, star formation, feedback from SNe of types II and Ia, stellar winds and UV flux from massive stars, and an algorithm to follow the chemical enrichment of the interstellar medium. Simulations with some of these ingredients are also presented.

  10. Numerical simulations of instabilities in the implosion process of inertial confined fusion in 2D cylindrical coordinates

    NASA Astrophysics Data System (ADS)

    Yong, Heng; Zhai, ChuanLei; Jiang, Song; Song, Peng; Dai, ZhenSheng; Gu, JianFa

    2016-01-01

    In this paper, we introduce a multi-material arbitrary Lagrangian and Eulerian method for the hydrodynamic radiative multi-group diffusion model in 2D cylindrical coordinates. The basic idea in the construction of the method is the following: In the Lagrangian step, a closure model of radiation-hydrodynamics is used to give the states of equations for materials in mixed cells. In the mesh rezoning step, we couple the rezoning principle with the Lagrangian interface tracking method and an Eulerian interface capturing scheme to compute interfaces sharply according to their deformation and to keep cells in good geometric quality. In the interface reconstruction step, a dual-material Moment-of-Fluid method is introduced to obtain the unique interface in mixed cells. In the remapping step, a conservative remapping algorithm of conserved quantities is presented. A number of numerical tests are carried out and the numerical results show that the new method can simulate instabilities in complex fluid field under large deformation, and are accurate and robust.

  11. Interaction Between Tropical Convection and its Embedding Environment: An Energetics Analysis of a 2-D Cloud Resolving Simulation

    NASA Technical Reports Server (NTRS)

    Li, Xiaofan; Sui, C.-H.; Lau, K.-M.

    1999-01-01

    The phase relation between the perturbation kinetic energy (K') associated with the tropical convection and the horizontal-mean moist available potential energy (bar-P) associated with environmental conditions is investigated by an energetics analysis of a numerical experiment. This experiment is performed using a 2-D cloud resolving model forced by the TOGA-COARE derived vertical velocity. The imposed upward motion leads to a decrease of bar-P directly through the associated vertical advective cooling, and to an increase of K' directly through cloud related processes, feeding the convection. The maximum K' and its maximum growth rate lags and leads, respectively, the maximum imposed large-scale upward motion by about 1-2 hours, indicating that convection is phase locked with large-scale forcing. The dominant life cycle of the simulated convection is about 9 hours, whereas the time scales of the imposed large-scale forcing are longer than the diurnal cycle. In the convective events, maximum growth of K' leads maximum decay of the perturbation moist available potential energy (P') by about 3 hours through vertical heat transport by perturbation circulation, and perturbation cloud heating. Maximum decay of P' leads maximum decay of bar-P by about one hour through the perturbation radiative, processes, the horizontal-mean cloud heating, and the large-scale vertical advective cooling. Therefore, maximum gain of K' occurs about 4-5 hours before maximum decay of bar-P.

  12. Hourglass control for Smooth Particle Hydrodynamics removes tensile and rank-deficiency instabilities - Hourglass control for SPH

    NASA Astrophysics Data System (ADS)

    Ganzenmüller, G. C.; Sauer, M.; May, M.; Hiermaier, S.

    2016-03-01

    We present a stabilization scheme for elastoplastic Smooth-Particle Hydrodynamics (SPH) which overcomes two major challenges: (i) the tensile instability inherent to the updated Lagrangian approach is suppressed and (ii) the rank-deficiency instability inherent to the nodal integration approach is cured. To achieve these goals, lessons learned from the Finite-Element Method are transferred to SPH. In particular, an analogue of hourglass control is derived for SPH, which locally linearizes the deformation field to obtain stable and accurate solutions, without the need to resort to stabilization via excessive artificial viscosity. The resulting SPH scheme combines the ability of updated Lagrangian SPH to model truly large deformations with the accuracy and stability needed to faithfully perform simulations. This claim is supported by the analysis of problematic cases and the simulation of an impact scenario.

  13. Hourglass control for Smooth Particle Hydrodynamics removes tensile and rank-deficiency instabilities. Hourglass control for SPH

    NASA Astrophysics Data System (ADS)

    Ganzenmüller, G. C.; Sauer, M.; May, M.; Hiermaier, S.

    2016-04-01

    We present a stabilization scheme for elastoplastic Smooth-Particle Hydrodynamics (SPH) which overcomes two major challenges: (i) the tensile instability inherent to the updated Lagrangian approach is suppressed and (ii) the rank-deficiency instability inherent to the nodal integration approach is cured. To achieve these goals, lessons learned from the Finite-Element Method are transferred to SPH. In particular, an analogue of hourglass control is derived for SPH, which locally linearizes the deformation field to obtain stable and accurate solutions, without the need to resort to stabilization via excessive artificial viscosity. The resulting SPH scheme combines the ability of updated Lagrangian SPH to model truly large deformations with the accuracy and stability needed to faithfully perform simulations. This claim is supported by the analysis of problematic cases and the simulation of an impact scenario.

  14. Hourglass control for Smooth Particle Hydrodynamics removes tensile and rank-deficiency instabilities. Hourglass control for SPH

    NASA Astrophysics Data System (ADS)

    Ganzenmüller, G. C.; Sauer, M.; May, M.; Hiermaier, S.

    2016-05-01

    We present a stabilization scheme for elastoplastic Smooth-Particle Hydrodynamics (SPH) which overcomes two major challenges: (i) the tensile instability inherent to the updated Lagrangian approach is suppressed and (ii) the rank-deficiency instability inherent to the nodal integration approach is cured. To achieve these goals, lessons learned from the Finite-Element Method are transferred to SPH. In particular, an analogue of hourglass control is derived for SPH, which locally linearizes the deformation field to obtain stable and accurate solutions, without the need to resort to stabilization via excessive artificial viscosity. The resulting SPH scheme combines the ability of updated Lagrangian SPH to model truly large deformations with the accuracy and stability needed to faithfully perform simulations. This claim is supported by the analysis of problematic cases and the simulation of an impact scenario.

  15. TITAN2D simulations of pyroclastic flows at Cerro Machín Volcano, Colombia: Hazard implications

    NASA Astrophysics Data System (ADS)

    Murcia, H. F.; Sheridan, M. F.; Macías, J. L.; Cortés, G. P.

    2010-03-01

    Cerro Machín is a dacitic tuff ring located in the central part of the Colombian Andes. It lies at the southern end of the Cerro Bravo-Cerro Machín volcanic belt. This volcano has experienced at least six major explosive eruptions during the last 5000 years. These eruptions have generated pyroclastic flows associated with Plinian activity that have traveled up to 8 km from the crater, and pyroclastic flows associated with Vulcanian activity with shorter runouts of 5 km from the source. Today, some 21,000 people live within a 8 km radius of Cerro Machín. The volcano is active with fumaroles and has shown increasing seismic activity since 2004, and therefore represents a potentially increasing threat to the local population. To evaluate the possible effects of future eruptions that may generate pyroclastic density currents controlled by granular flow dynamics we performed flow simulations with the TITAN2D code. These simulations were run in all directions around the volcano, using the input parameters of the largest eruption reported. The results show that an eruption of 0.3 km 3 of pyroclastic flows from a collapsing Plinian column would travel up to 9 km from the vent, emplacing a deposit thicker than 60 m within the Toche River valley. Deposits >45 m thick can be expected in the valleys of San Juan, Santa Marta, and Azufral creeks, while 30 m thick deposits could accumulate within the drainages of the Tochecito, Bermellón, and Coello Rivers. A minimum area of 56 km 2 could be affected directly by this kind of eruption. In comparison, Vulcanian column-collapse pyroclastic flows of 0.1 km 3 would travel up to 6 km from the vent depositing >45 m thick debris inside the Toche River valley and more than 30 m inside the valleys of San Juan, Santa Marta, and Azufral creeks. The minimum area that could be affected directly by this kind of eruption is 33 km 2. The distribution and thickness of the deposits obtained by these simulations are consistent with the hazard

  16. Complex fluid flow modeling with SPH on GPU

    NASA Astrophysics Data System (ADS)

    Bilotta, Giuseppe; Hérault, Alexis; Del Negro, Ciro; Russo, Giovanni; Vicari, Annamaria

    2010-05-01

    We describe an implementation of the Smoothed Particle Hydrodynamics (SPH) method for the simulation of complex fluid flows. The algorithm is entirely executed on Graphic Processing Units (GPUs) using the Compute Unified Device Architecture (CUDA) developed by NVIDIA and fully exploiting their computational power. An increase of one to two orders of magnitude in simulation speed over equivalent CPU code is achieved. A complete modeling of the flow of a complex fluid such as lava is challenging from the modelistic, numerical and computational points of view. The natural topography irregularities, the dynamic free boundaries and phenomena such as solidification, presence of floating solid bodies or other obstacles and their eventual fragmentation make the problem difficult to solve using traditional numerical methods (finite volumes, finite elements): the need to refine the discretization grid in correspondence of high gradients, when possible, is computationally expensive and with an often inadequate control of the error; for real-world applications, moreover, the information needed by the grid refinement may not be available (e.g. because the Digital Elevation Models are too coarse); boundary tracking is also problematic with Eulerian discretizations, more so with complex fluids due to the presence of internal boundaries given by fluid inhomogeneity and presence of solidification fronts. An alternative approach is offered by mesh-free particle methods, that solve most of the problems connected to the dynamics of complex fluids in a natural way. Particle methods discretize the fluid using nodes which are not forced on a given topological structure: boundary treatment is therefore implicit and automatic; the movement freedom of the particles also permits the treatment of deformations without incurring in any significant penalty; finally, the accuracy is easily controlled by the insertion of new particles where needed. Our team has developed a new model based on the

  17. The modular approach enables a fully ab initio simulation of the contacts between 3D and 2D materials.

    PubMed

    Fediai, Artem; Ryndyk, Dmitry A; Cuniberti, Gianaurelio

    2016-10-01

    Up to now, the electrical properties of the contacts between 3D metals and 2D materials have never been computed at a fully ab initio level due to the huge number of atomic orbitals involved in a current path from an electrode to a pristine 2D material. As a result, there are still numerous open questions and controversial theories on the electrical properties of systems with 3D/2D interfaces-for example, the current path and the contact length scalability. Our work provides a first-principles solution to this long-standing problem with the use of the modular approach, a method which rigorously combines a Green function formalism with the density functional theory (DFT) for this particular contact type. The modular approach is a general approach valid for any 3D/2D contact. As an example, we apply it to the most investigated among 3D/2D contacts-metal/graphene contacts-and show its abilities and consistency by comparison with existing experimental data. As it is applicable to any 3D/2D interface, the modular approach allows the engineering of 3D/2D contacts with the pre-defined electrical properties. PMID:27502169

  18. Influence of Transport on Two-Dimensional Model Simulation. Tracer Sensitivity to 2-D Model Transport. 1; Long Lived Tracers

    NASA Technical Reports Server (NTRS)

    Fleming, Eric L.; Jackman, Charles H.; Considine, David B.; Stolarski, Richard S.

    1999-01-01

    In this study, we examine the sensitivity of long lived tracers to changes in the base transport components in our 2-D model. Changes to the strength of the residual circulation in the upper troposphere and stratosphere and changes to the lower stratospheric K(sub zz) had similar effects in that increasing the transport rates decreased the overall stratospheric mean age, and increased the rate of removal of material from the stratosphere. Increasing the stratospheric K(sub yy) increased the mean age due to the greater recycling of air parcels through the middle atmosphere, via the residual circulation, before returning to the troposphere. However, increasing K(sub yy) along with self-consistent increases in the corresponding planetary wave drive, which leads to a stronger residual circulation, more than compensates for the K(sub yy)-effect, and produces significantly younger ages throughout the stratosphere. Simulations with very small tropical stratospheric K(sub yy) decreased the globally averaged age of air by as much as 25% in the middle and upper stratosphere, and resulted in substantially weaker vertical age gradients above 20 km in the extratropics. We found only very small stratospheric tracer sensitivity to the magnitude of the horizontal mixing across the tropopause, and to the strength of the mesospheric gravity wave drag and diffusion used in the model. We also investigated the transport influence on chemically active tracers and found a strong age-tracer correlation, both in concentration and calculated lifetimes. The base model transport gives the most favorable overall comparison with a variety of inert tracer observations, and provides a significant improvement over our previous 1995 model transport. Moderate changes to the base transport were found to provide modest agreement with some of the measurements. Transport scenarios with residence times ranging from moderately shorter to slightly longer relative to the base case simulated N2O lifetimes

  19. Rainfall/runoff simulation with 2D full shallow water equations: Sensitivity analysis and calibration of infiltration parameters

    NASA Astrophysics Data System (ADS)

    Fernández-Pato, Javier; Caviedes-Voullième, Daniel; García-Navarro, Pilar

    2016-05-01

    One of the most difficult issues in the development of hydrologic models is to find a rigorous source of data and specific parameters to a given problem, on a given location that enable reliable calibration. In this paper, a distributed and physically based model (2D Shallow Water Equations) is used for surface flow and runoff calculations in combination with two infiltration laws (Horton and Green-Ampt) for estimating infiltration in a watershed. This technique offers the capability of assigning a local and time-dependent infiltration rate to each computational cell depending on the available surface water, soil type or vegetation. We investigate how the calibration of parameters is affected by transient distributed Shallow Water model and the complexity of the problem. In the first part of this work, we calibrate the infiltration parameters for both Horton and Green-Ampt models under flat ponded soil conditions. Then, by means of synthetic test cases, we perform a space-distributed sensitivity analysis in order to show that this calibration can be significantly affected by the introduction of topography or rainfall. In the second part, parameter calibration for a real catchment is addressed by comparing the numerical simulations with two different sets of experimental data, corresponding to very different events in terms of the rainfall volume. We show that the initial conditions of the catchment and the rainfall pattern have a special relevance in the quality of the adjustment. Hence, it is shown that the topography of the catchment and the storm characteristics affect the calibration of infiltration parameters.

  20. Analysis of the terrestrial ion foreshock: 2D Full-Particle simulation of a curved supercritical shock

    NASA Astrophysics Data System (ADS)

    Lembege, B.; Savoini, P.; Stienlet, J.

    2013-05-01

    Two distinct ion populations backstreaming into the solar wind have been clearly evidenced by various space missions within the quasi-perpendicular region of the ion foreshock located upstream of the Earth's Bow shock (i.e. for 45° ≤ Theta_Bn ≤ 90°, where Theta_Bn is the angle between the shock normal and the upstream magnetostatic field): (i) field-aligned ion beams (« FAB ») characterized by a gyrotropic distribution, and (ii) gyro-phase bunched ions («GPB »), characterized by a NON gyrotropic distribution. The origin of these backstreaming ions has not been clearly identified and is presently analyzed with the help of 2D PIC simulation of a curved shock, where full curvature effects, time of flight effects and both electrons and ions dynamics are fully described within a self consistent approach. Present simulations evidence that these two populations can be effectively created directly by the shock front without invoking microinstabilities. The analysis of both individual and statistical ion trajectories evidences that: (i) two new parameters, namely the interaction time DT_inter and distance of penetration L_depth into the shock wave, play a key role and allow to discriminate these two populations. "GPB" population is characterized by a very short interaction time (DT_inter = 1 to 2 Tci) in comparison to the "FAB" population (DT_inter = 2 Tci to 10 Tci) which moves back and forth between the upstream edge of the shock front and the overshoot, where tci is the upstream ion gyroperiod. (ii) the importance of the injection angle (i.e. the angle between the normal of the shock front and the gyration velocity when ions reach the shock) to understand how the reflection process takes place. (iii) "FAB" population drifts along the curved shock front scanning a large Theta_Bn range from 90°. (iv) "GPB" population is embedded within the "FAB" population near the shock front which explains the difficulty to identify such a population in the experimental

  1. Fundamental differences between SPH and grid methods

    NASA Astrophysics Data System (ADS)

    Agertz, Oscar; Moore, Ben; Stadel, Joachim; Potter, Doug; Miniati, Francesco; Read, Justin; Mayer, Lucio; Gawryszczak, Artur; Kravtsov, Andrey; Nordlund, Åke; Pearce, Frazer; Quilis, Vicent; Rudd, Douglas; Springel, Volker; Stone, James; Tasker, Elizabeth; Teyssier, Romain; Wadsley, James; Walder, Rolf

    2007-09-01

    We have carried out a comparison study of hydrodynamical codes by investigating their performance in modelling interacting multiphase fluids. The two commonly used techniques of grid and smoothed particle hydrodynamics (SPH) show striking differences in their ability to model processes that are fundamentally important across many areas of astrophysics. Whilst Eulerian grid based methods are able to resolve and treat important dynamical instabilities, such as Kelvin-Helmholtz or Rayleigh-Taylor, these processes are poorly or not at all resolved by existing SPH techniques. We show that the reason for this is that SPH, at least in its standard implementation, introduces spurious pressure forces on particles in regions where there are steep density gradients. This results in a boundary gap of the size of an SPH smoothing kernel radius over which interactions are severely damped.

  2. Implicit integrations for SPH in semi-Lagrangian approach: Application to the accretion disc modeling in a microquasar

    NASA Astrophysics Data System (ADS)

    Lanzafame, G.

    2013-03-01

    Current explicit integration techniques in fluid dynamics are deeply limited by the Courant-Friedrichs-Lewy condition of the time step progression, based on the adopted spatial resolution coupled with the maximum value between the kinetic velocity or the signal transmission speed in the computational domain. Eulerian implicit integration techniques, even though more time consuming, can allow us to perform stable computational fluid dynamics paying the price of a relatively larger inaccuracy in the calculations, without suffering such a strict temporal limitation. In this paper, we present a simple and effective scheme to perform free Lagrangian Smooth Particle Hydrodynamics (SPH) implicit integrations in the semi-Lagrangian approach without any Jacobian matrix inversion operations for viscous Navier-Stokes flows. Applications to SPH accretion disc simulation around a massive black hole (MBH) in a binary stellar system are shown, together with the comparison to the same results obtained according to the traditional explicit integration techniques. Some 1D and 2D critical tests are also discussed to check the validity of the technique.

  3. MODELING HIGH-ENERGY LIGHT CURVES OF THE PSR B1259-63/LS 2883 BINARY BASED ON 3D SPH SIMULATIONS

    SciTech Connect

    Takata, J.; Okazaki, A. T.; Nagataki, S.; Lee, S.-H.; Naito, T.; Kawachi, A.; Mori, M.; Hayasaki, K.; Yamaguchi, M. S.; Owocki, S. P.

    2012-05-01

    Temporal changes of X-ray to very high energy gamma-ray emissions from the pulsar-Be-star binary PSR B1259-63/LS 2883 are studied based on three-dimensional smoothed particle hydrodynamic simulations of pulsar wind interaction with Be-disk and wind. We focus on the periastron passage of the binary and calculate the variation of the synchrotron and inverse-Compton emissions using the simulated shock geometry and pressure distribution of the pulsar wind. The characteristic double-peaked X-ray light curve from observations is reproduced by our simulation under a dense Be-disk condition (base density {approx}10{sup -9} g cm{sup -3}). We interpret the pre- and post-periastron peaks as being due to a significant increase in the conversion efficiency from pulsar spin-down power to the shock-accelerated particle energy at orbital phases when the pulsar crosses the disk before periastron passage, and when the pulsar wind creates a cavity in the disk gas after periastron passage, respectively. On the contrary, in the model TeV light curve, which also shows a double-peak feature, the first peak appears around the periastron phase. The possible effects of cooling processes on the TeV light curve are briefly discussed.

  4. Balancing the source terms in a SPH model for solving the shallow water equations

    NASA Astrophysics Data System (ADS)

    Xia, Xilin; Liang, Qiuhua; Pastor, Manuel; Zou, Weilie; Zhuang, Yan-Feng

    2013-09-01

    A shallow flow generally features complex hydrodynamics induced by complicated domain topography and geometry. A numerical scheme with well-balanced flux and source term gradients is therefore essential before a shallow flow model can be applied to simulate real-world problems. The issue of source term balancing has been exhaustively investigated in grid-based numerical approaches, e.g. discontinuous Galerkin finite element methods and finite volume Godunov-type methods. In recent years, a relatively new computational method, smooth particle hydrodynamics (SPH), has started to gain popularity in solving the shallow water equations (SWEs). However, the well-balanced problem has not been fully investigated and resolved in the context of SPH. This work aims to discuss the well-balanced problem caused by a standard SPH discretization to the SWEs with slope source terms and derive a corrected SPH algorithm that is able to preserve the solution of lake at rest. In order to enhance the shock capturing capability of the resulting SPH model, the Monotone Upwind-centered Scheme for Conservation Laws (MUSCL) is also explored and applied to enable Riemann solver based artificial viscosity. The new SPH model is validated against several idealized benchmark tests and a real-world dam-break case and promising results are obtained.

  5. Parallel Tree-SPH: A Tool for Galaxy Formation

    NASA Astrophysics Data System (ADS)

    Lia, C.; Carraro, G.

    We describe a new implementation of a parallel Tree-SPH code with the aim of simulating galaxy formation and evolution. The code has been parallelized using SHMEM, a Cray proprietary library to handle communications between the 256 processors of the Silicon Graphics T3E massively parallel supercomputer hosted by the Cineca Super-computing Center (Bologna, Italy). The code combines the smoothed particle hydrodynamics (SPH) method to solve hydrodynamical equations with the popular Barnes and Hut (1986) tree-code to perform gravity calculation with a N × log N scaling, and it is based on the scalar Tree-SPH code developed by Carraro et al. (1998). Parallelization is achieved by distributing particles along processors according to a workload criterion. Benchmarks of the code, in terms of load balance and scalability, are analysed and critically discussed against the adiabatic collapse of an isothermal gas sphere test using 2 × 10^4 particles on eight processors. The code turns out to be balanced at more than 95% level. If the number of processors is increased, the load balance worsens slightly. The deviation from perfect scalability at increasing number of processors is negligible up to 64 processors. Additionally we have incorporated radiative cooling, star formation, feedback and an algorithm to follow the chemical enrichment of the interstellar medium.

  6. Density estimators in particle hydrodynamics. DTFE versus regular SPH

    NASA Astrophysics Data System (ADS)

    Pelupessy, F. I.; Schaap, W. E.; van de Weygaert, R.

    2003-05-01

    We present the results of a study comparing density maps reconstructed by the Delaunay Tessellation Field Estimator (DTFE) and by regular SPH kernel-based techniques. The density maps are constructed from the outcome of an SPH particle hydrodynamics simulation of a multiphase interstellar medium. The comparison between the two methods clearly demonstrates the superior performance of the DTFE with respect to conventional SPH methods, in particular at locations where SPH appears to fail. Filamentary and sheetlike structures form telling examples. The DTFE is a fully self-adaptive technique for reconstructing continuous density fields from discrete particle distributions, and is based upon the corresponding Delaunay tessellation. Its principal asset is its complete independence of arbitrary smoothing functions and parameters specifying the properties of these. As a result it manages to faithfully reproduce the anisotropies of the local particle distribution and through its adaptive and local nature proves to be optimally suited for uncovering the full structural richness in the density distribution. Through the improvement in local density estimates, calculations invoking the DTFE will yield a much better representation of physical processes which depend on density. This will be crucial in the case of feedback processes, which play a major role in galaxy and star formation. The presented results form an encouraging step towards the application and insertion of the DTFE in astrophysical hydrocodes. We describe an outline for the construction of a particle hydrodynamics code in which the DTFE replaces kernel-based methods. Further discussion addresses the issue and possibilities for a moving grid-based hydrocode invoking the DTFE, and Delaunay tessellations, in an attempt to combine the virtues of the Eulerian and Lagrangian approaches.

  7. Volcanic flood simulation of magma effusion using FLO-2D for drainage of a caldera lake at the Mt. Baekdusan

    NASA Astrophysics Data System (ADS)

    Lee, Khil-Ha; Kim, Sung-Wook; Kim, Sang-Hyun

    2014-05-01

    model, called FLO-2D runs to simulate channel routing downstream to give the maximum water level. Once probable inundation areas are identified by the huge volume of water in the caldera lake, the unique geography, and the limited control capability, a potential hazard assessment can be represented. The study will contribute to build a geohazard map for the decision-makers and practitioners. Keywords: Volcanic flood, Caldera lake, Hazard assessment, Magma effusion Acknowledgement This research was supported by a grant [NEMA-BAEKDUSAN-2012-1-2] from the Volcanic Disaster Preparedness Research Center sponsored by National Emergency Management Agency of Korea.

  8. SIMULATIONS OF 2D AND 3D THERMOCAPILLARY FLOWS BY A LEAST-SQUARES FINITE ELEMENT METHOD. (R825200)

    EPA Science Inventory

    Numerical results for time-dependent 2D and 3D thermocapillary flows are presented in this work. The numerical algorithm is based on the Crank-Nicolson scheme for time integration, Newton's method for linearization, and a least-squares finite element method, together with a matri...

  9. ScintSim1: A new Monte Carlo simulation code for transport of optical photons in 2D arrays of scintillation detectors.

    PubMed

    Mosleh-Shirazi, Mohammad Amin; Zarrini-Monfared, Zinat; Karbasi, Sareh; Zamani, Ali

    2014-01-01

    Two-dimensional (2D) arrays of thick segmented scintillators are of interest as X-ray detectors for both 2D and 3D image-guided radiotherapy (IGRT). Their detection process involves ionizing radiation energy deposition followed by production and transport of optical photons. Only a very limited number of optical Monte Carlo simulation models exist, which has limited the number of modeling studies that have considered both stages of the detection process. We present ScintSim1, an in-house optical Monte Carlo simulation code for 2D arrays of scintillation crystals, developed in the MATLAB programming environment. The code was rewritten and revised based on an existing program for single-element detectors, with the additional capability to model 2D arrays of elements with configurable dimensions, material, etc., The code generates and follows each optical photon history through the detector element (and, in case of cross-talk, the surrounding ones) until it reaches a configurable receptor, or is attenuated. The new model was verified by testing against relevant theoretically known behaviors or quantities and the results of a validated single-element model. For both sets of comparisons, the discrepancies in the calculated quantities were all <1%. The results validate the accuracy of the new code, which is a useful tool in scintillation detector optimization. PMID:24600168

  10. ScintSim1: A new Monte Carlo simulation code for transport of optical photons in 2D arrays of scintillation detectors

    PubMed Central

    Mosleh-Shirazi, Mohammad Amin; Zarrini-Monfared, Zinat; Karbasi, Sareh; Zamani, Ali

    2014-01-01

    Two-dimensional (2D) arrays of thick segmented scintillators are of interest as X-ray detectors for both 2D and 3D image-guided radiotherapy (IGRT). Their detection process involves ionizing radiation energy deposition followed by production and transport of optical photons. Only a very limited number of optical Monte Carlo simulation models exist, which has limited the number of modeling studies that have considered both stages of the detection process. We present ScintSim1, an in-house optical Monte Carlo simulation code for 2D arrays of scintillation crystals, developed in the MATLAB programming environment. The code was rewritten and revised based on an existing program for single-element detectors, with the additional capability to model 2D arrays of elements with configurable dimensions, material, etc., The code generates and follows each optical photon history through the detector element (and, in case of cross-talk, the surrounding ones) until it reaches a configurable receptor, or is attenuated. The new model was verified by testing against relevant theoretically known behaviors or quantities and the results of a validated single-element model. For both sets of comparisons, the discrepancies in the calculated quantities were all <1%. The results validate the accuracy of the new code, which is a useful tool in scintillation detector optimization. PMID:24600168

  11. Parasitic extraction and magnetic analysis for transformers, inductors and igbt bridge busbar with maxwell 2d and maxwell 3d simulation

    NASA Astrophysics Data System (ADS)

    Zhang, Ning

    This thesis presents the parasitic extraction and magnetic analysis for transformers, inductors, and IGBT bridge busbars with Maxwell 2D and Maxwell 3D simulation. In the first chapter, the magnetic field of a transformer in Maxwell 2D is analyzed. The parasitic capacitance between each winding of the transformer are extracted by Maxwell 2D. According to the actual dimensions, the parasitic capacitances are calculated. The results are verified by comparing with the measurement results from 4395A impedance analyzer. In the second chapter, two CM inductors are simulated in Maxwell 3D. One is the conventional winding inductor, the other one is the proposed one. The magnetic field distributions of different winding directions are analyzed. The analysis is verified by the simulation result. The last chapter introduces a technique to analyze, extract, and measure the parasitic inductance of planar busbars. With this technique, the relationship between self-inductance and mutual-inductance is analyzed. Secondly, a total inductance is calculated based on the developed technique. Thirdly, the current paths and the inductance on a planar busbar are investigated with DC-link capacitors. Furthermore, the analysis of the inductance is addressed. Ansys Q3D simulation and analysis are presented. Finally, the experimental verification is shown by the S-parameter measurement.

  12. Comparative Simulations of 2D and 3D Mixed Convection Flow in a Faulted Basin: an Example from the Yarmouk Gorge, Israel and Jordan

    NASA Astrophysics Data System (ADS)

    Magri, F.; Inbar, N.; Raggad, M.; Möller, S.; Siebert, C.; Möller, P.; Kuehn, M.

    2014-12-01

    Lake Kinneret (Lake Tiberias or Sea of Galilee) is the most important freshwater reservoir in the Northern Jordan Valley. Simulations that couple fluid flow, heat and mass transport are built to understand the mechanisms responsible for the salinization of this important resource. Here the effects of permeability distribution on 2D and 3D convective patterns are compared. 2D simulations indicate that thermal brine in Haon and some springs in the Yamourk Gorge (YG) are the result of mixed convection, i.e. the interaction between the regional flow from the bordering heights and thermally-driven flow (Magri et al., 2014). Calibration of the calculated temperature profiles suggests that the faults in Haon and the YG provides paths for ascending hot waters, whereas the fault in the Golan recirculates water between 1 and 2 km depths. At higher depths, faults induce 2D layered convection in the surrounding units. The 2D assumption for a faulted basin can oversimplify the system, and the conclusions might not be fully correct. The 3D results also point to mixed convection as the main mechanism for the thermal anomalies. However, in 3D the convective structures are more complex allowing for longer flow paths and residence times. In the fault planes, hydrothermal convection develops in a finger regime enhancing inflow and outflow of heat in the system. Hot springs can form locally at the surface along the fault trace. By contrast, the layered cells extending from the faults into the surrounding sediments are preserved and are similar to those simulated in 2D. The results are consistent with the theory from Zhao et al. (2003), which predicts that 2D and 3D patterns have the same probability to develop given the permeability and temperature ranges encountered in geothermal fields. The 3D approach has to be preferred to the 2D in order to capture all patterns of convective flow, particularly in the case of planar high permeability regions such as faults. Magri, F., et al., 2014

  13. Unraveling the dynamics and structure of functionalized self-assembled monolayers on gold using 2D IR spectroscopy and MD simulations.

    PubMed

    Yan, Chang; Yuan, Rongfeng; Pfalzgraff, William C; Nishida, Jun; Wang, Lu; Markland, Thomas E; Fayer, Michael D

    2016-05-01

    Functionalized self-assembled monolayers (SAMs) are the focus of ongoing investigations because they can be chemically tuned to control their structure and dynamics for a wide variety of applications, including electrochemistry, catalysis, and as models of biological interfaces. Here we combine reflection 2D infrared vibrational echo spectroscopy (R-2D IR) and molecular dynamics simulations to determine the relationship between the structures of functionalized alkanethiol SAMs on gold surfaces and their underlying molecular motions on timescales of tens to hundreds of picoseconds. We find that at higher head group density, the monolayers have more disorder in the alkyl chain packing and faster dynamics. The dynamics of alkanethiol SAMs on gold are much slower than the dynamics of alkylsiloxane SAMs on silica. Using the simulations, we assess how the different molecular motions of the alkyl chain monolayers give rise to the dynamics observed in the experiments. PMID:27044113

  14. Precipitation Processes developed during ARM (1997), TOGA COARE(1992), GATE(1 974), SCSMEX(1998) and KWAJEX(1999): Consistent 2D and 3D Cloud Resolving Model Simulations

    NASA Technical Reports Server (NTRS)

    Tao, W.-K.; Shie, C.-H.; Simpson, J.; Starr, D.; Johnson, D.; Sud, Y.

    2003-01-01

    Real clouds and clouds systems are inherently three dimensional (3D). Because of the limitations in computer resources, however, most cloud-resolving models (CRMs) today are still two-dimensional (2D). A few 3D CRMs have been used to study the response of clouds to large-scale forcing. In these 3D simulations, the model domain was small, and the integration time was 6 hours. Only recently have 3D experiments been performed for multi-day periods for tropical cloud system with large horizontal domains at the National Center for Atmospheric Research. The results indicate that surface precipitation and latent heating profiles are very similar between the 2D and 3D simulations of these same cases. The reason for the strong similarity between the 2D and 3D CRM simulations is that the observed large-scale advective tendencies of potential temperature, water vapor mixing ratio, and horizontal momentum were used as the main forcing in both the 2D and 3D models. Interestingly, the 2D and 3D versions of the CRM used in CSU and U.K. Met Office showed significant differences in the rainfall and cloud statistics for three ARM cases. The major objectives of this project are to calculate and axamine: (1)the surface energy and water budgets, (2) the precipitation processes in the convective and stratiform regions, (3) the cloud upward and downward mass fluxes in the convective and stratiform regions; (4) cloud characteristics such as size, updraft intensity and lifetime, and (5) the entrainment and detrainment rates associated with clouds and cloud systems that developed in TOGA COARE, GATE, SCSMEX, ARM and KWAJEX. Of special note is that the analyzed (model generated) data sets are all produced by the same current version of the GCE model, i.e. consistent model physics and configurations. Trajectory analyse and inert tracer calculation will be conducted to identify the differences and similarities in the organization of convection between simulated 2D and 3D cloud systems.

  15. Simulation using HYDRUS-2D for Soil Water and Heat Transfer under Drip Irrigation with 95oC Hot Water

    NASA Astrophysics Data System (ADS)

    Ito, Y.; Noborio, K.

    2015-12-01

    In Japan, soil disinfection with hot water has been popular since the use of methyl bromide was restricted in 2005. Decreasing the amount of hot water applied may make farmers reduce the operation cost. To determine the appropriate amount of hot water needed for soil disinfection, HYDRUS-2D was evaluated. A field experiment was conducted and soil water content and soil temperature were measured at 5, 10, 20, 40, 60, 80 and 100 cm deep when 95oC hot water was applied. Irrigation tubing equipped with drippers every 30 cm were laid at the soil surface, z=0 cm. An irrigation rate for each dripper was 0.83 cm min-1 between t=0 and 120 min, and thereafter it was zero. Temperature of irrigation water was 95oC. Total simulation time with HYDRUS-2D was 720 min for a homogeneous soil. A simulating domain was selected as x=60 cm and z=100 cm. A potential evaporation rate was assumed to be 0 cm min-1 because the soil surface was covered with a plastic sheet. The boundary condition at the bottom was free drainage and those of both sides were no-flux conditions. Hydraulic properties and bulk densities measured at each depth were used for simulation. It was assumed that there was no organic matter contained. Soil thermal properties were adopted from previous study and HYDRUS 2D. Simulated temperatures at 5, 10, 20 and 40 cm deep agreed well with those measured although simulated temperatures at 60, 80, and 100 cm deep were overly estimated. Estimates of volumetric water content at 5 cm deep agreed well with measured values. Simulated values at 10 to 100 cm deep were overly estimated by 0.1 to 0.3 (m3 m-3). The deeper the soil became, the more the simulated wetting front lagged behind the measured one. It was speculated that water viscosity estimated smaller at high temperature might attributed to the slower advances of wetting front simulated with HYDRUS 2-D.

  16. Simulation of ultrasound radio-frequency signals in deformed tissue for validation of 2D motion estimation with sub-sample accuracy.

    PubMed

    Goksel, Orcun; Zahiri-Azar, Reza; Salcudean, Septimiu E

    2007-01-01

    Motion estimation in sequences of ultrasound echo signals is essential for a wide range of applications. In time domain cross correlation, which is a common motion estimation technique, the displacements are typically not integral multiples of the sampling period. Therefore, to estimate the motion with sub-sample accuracy, 1D and 2D interpolation methods such as parabolic, cosine, and ellipsoid fitting have been introduced in the literature. In this paper, a simulation framework is presented in order to compare the performance of currently available techniques. First, the tissue deformation is modeled using the finite element method (FEM) and then the corresponding pre-/post-deformation radio-frequency (RF) signals are generated using Field II ultrasound simulation software. Using these simulated RF data of deformation, both axial and lateral tissue motion are estimated with sub-sample accuracy. The estimated displacements are then evaluated by comparing them to the known displacements computed by the FEM. This simulation approach was used to evaluate three different lateral motion estimation techniques employing (i) two separate 1D sub-sampling, (ii) two consecutive 1D sub-sampling, and (iii) 2D joint sub-sampling estimators. The estimation errors during two different tissue compression tests are presented with and without spatial filtering. Results show that RF signal processing methods involving tissue deformation can be evaluated using the proposed simulation technique, which employs accurate models. PMID:18002416

  17. High divergent 2D grating

    NASA Astrophysics Data System (ADS)

    Wang, Jin; Ma, Jianyong; Zhou, Changhe

    2014-11-01

    A 3×3 high divergent 2D-grating with period of 3.842μm at wavelength of 850nm under normal incidence is designed and fabricated in this paper. This high divergent 2D-grating is designed by the vector theory. The Rigorous Coupled Wave Analysis (RCWA) in association with the simulated annealing (SA) is adopted to calculate and optimize this 2D-grating.The properties of this grating are also investigated by the RCWA. The diffraction angles are more than 10 degrees in the whole wavelength band, which are bigger than the traditional 2D-grating. In addition, the small period of grating increases the difficulties of fabrication. So we fabricate the 2D-gratings by direct laser writing (DLW) instead of traditional manufacturing method. Then the method of ICP etching is used to obtain the high divergent 2D-grating.

  18. Application of rank-ordered multifractal analysis (ROMA) to intermittent fluctuations in 3D turbulent flows, 2D MHD simulation and solar wind data

    NASA Astrophysics Data System (ADS)

    Wu, C.; Chang, T.

    2010-12-01

    A new method in describing the multifractal characteristics of intermittent events was introduced by Cheng and Wu [Chang T. and Wu C.C., Physical Rev, E77, 045401(R), 2008]. The procedure provides a natural connection between the rank-ordered spectrum and the idea of one-parameter scaling for monofractals. This technique has been demonstrated using results obtained from a 2D MHD simulation. It has also been successfully applied to in-situ solar wind observations [Chang T., Wu, C.C. and Podesta, J., AIP Conf Proc. 1039, 75, 2008], and the broadband electric field oscillations from the auroral zone [Tam, S.W.Y. et al., Physical Rev, E81, 036414, 2010]. We take the next step in this procedure. By using the ROMA spectra and the scaled probability distribution functions (PDFs), raw PDFs can be calculated, which can be compared directly with PDFs from observations or simulation results. In addition to 2D MHD simulation results and in-situ solar wind observation, we show clearly using the ROMA analysis the multifractal character of the 3D fluid simulation data obtained from the JHU turbulence database cluster at http://turbulence.pha.jhu.edu. In particular, we show the scaling of the non-symmetrical PDF for the parallel-velocity fluctuations of this 3D fluid data.

  19. Numerical modelling of propagation of landslides using SPH

    NASA Astrophysics Data System (ADS)

    Montull, Carlos; Pastor, Manuel; Springman, Sarah

    2015-04-01

    Landslides cause severe economic damage and a large number of casualties every year around the world. Engineers and geologists need to understand and predict their properties, such as velocity, depth and run out distance. In addition to experience gained on similar cases, predictions require the application of mathematical, constitutive/rheological and numerical models. Different models are currently used to simulate long run-out landslides in order to elaborate hazard maps. Among the available alternatives, depth integrated models present a reasonable compromise between computational cost and accuracy. The purpose of this paper is to apply the SPH depth integrated model, together with suitable rheological laws, to analize fast landslides. We will present the results obtained with the code Geoflow_SPH to three selected cases: (i) The Frank avalanche, (ii) the Cougar Hill flowslide and (iii) the Sham Tseng debris flow. The results of the simulations include estimations of fundamental aspects of the problem, such as the path followed by the sliding mass, the shape of the run-out area, the maximum run-out, the depth of the final deposit, the pore pressure evolution and the speed evolution of the landslide.

  20. Meshing Preprocessor for the Mesoscopic 3D Finite Element Simulation of 2D and Interlock Fabric Deformation

    NASA Astrophysics Data System (ADS)

    Wendling, A.; Daniel, J. L.; Hivet, G.; Vidal-Sallé, E.; Boisse, P.

    2015-12-01

    Numerical simulation is a powerful tool to predict the mechanical behavior and the feasibility of composite parts. Among the available numerical approaches, as far as woven reinforced composites are concerned, 3D finite element simulation at the mesoscopic scale leads to a good compromise between realism and complexity. At this scale, the fibrous reinforcement is modeled by an interlacement of yarns assumed to be homogeneous that have to be accurately represented. Among the numerous issues induced by these simulations, the first one consists in providing a representative meshed geometrical model of the unit cell at the mesoscopic scale. The second one consists in enabling a fast data input in the finite element software (contacts definition, boundary conditions, elements reorientation, etc.) so as to obtain results within reasonable time. Based on parameterized 3D CAD modeling tool of unit-cells of dry fabrics already developed, this paper presents an efficient strategy which permits an automated meshing of the models with 3D hexahedral elements and to accelerate of several orders of magnitude the simulation data input. Finally, the overall modeling strategy is illustrated by examples of finite element simulation of the mechanical behavior of fabrics.

  1. 2D Radiation-hydrodynamic Simulations of Supernova Shock Breakout in Bipolar Explosions of a Blue Supergiant Progenitor

    NASA Astrophysics Data System (ADS)

    Suzuki, Akihiro; Maeda, Keiichi; Shigeyama, Toshikazu

    2016-07-01

    A two-dimensional special relativistic radiation-hydrodynamics code is developed and applied to numerical simulations of supernova shock breakout in bipolar explosions of a blue supergiant. Our calculations successfully simulate the dynamical evolution of a blast wave in the star and its emergence from the surface. Results of the model with spherical energy deposition show a good agreement with previous simulations. Furthermore, we calculate several models with bipolar energy deposition and compare their results with the spherically symmetric model. The bolometric light curves of the shock breakout emission are calculated by a ray-tracing method. Our radiation-hydrodynamic models indicate that the early part of the shock breakout emission can be used to probe the geometry of the blast wave produced as a result of the gravitational collapse of the iron core.

  2. Numerical simulations - Some results for the 2- and 3-D Hubbard models and a 2-D electron phonon model

    NASA Technical Reports Server (NTRS)

    Scalapino, D. J.; Sugar, R. L.; White, S. R.; Bickers, N. E.; Scalettar, R. T.

    1989-01-01

    Numerical simulations on the half-filled three-dimensional Hubbard model clearly show the onset of Neel order. Simulations of the two-dimensional electron-phonon Holstein model show the competition between the formation of a Peierls-CDW state and a superconducting state. However, the behavior of the partly filled two-dimensional Hubbard model is more difficult to determine. At half-filling, the antiferromagnetic correlations grow as T is reduced. Doping away from half-filling suppresses these correlations, and it is found that there is a weak attractive pairing interaction in the d-wave channel. However, the strength of the pair field susceptibility is weak at the temperatures and lattice sizes that have been simulated, and the nature of the low-temperature state of the nearly half-filled Hubbard model remains open.

  3. 2D hydrodynamic simulations of a variable length gas target for density down-ramp injection of electrons into a laser wakefield accelerator

    NASA Astrophysics Data System (ADS)

    Kononenko, O.; Lopes, N. C.; Cole, J. M.; Kamperidis, C.; Mangles, S. P. D.; Najmudin, Z.; Osterhoff, J.; Poder, K.; Rusby, D.; Symes, D. R.; Warwick, J.; Wood, J. C.; Palmer, C. A. J.

    2016-09-01

    In this work, two-dimensional (2D) hydrodynamic simulations of a variable length gas cell were performed using the open source fluid code OpenFOAM. The gas cell was designed to study controlled injection of electrons into a laser-driven wakefield at the Astra Gemini laser facility. The target consists of two compartments: an accelerator and an injector section connected via an aperture. A sharp transition between the peak and plateau density regions in the injector and accelerator compartments, respectively, was observed in simulations with various inlet pressures. The fluid simulations indicate that the length of the down-ramp connecting the sections depends on the aperture diameter, as does the density drop outside the entrance and the exit cones. Further studies showed, that increasing the inlet pressure leads to turbulence and strong fluctuations in density along the axial profile during target filling, and consequently, is expected to negatively impact the accelerator stability.

  4. Comparison and analysis of 2-D simulation results with two implosion radiation experiments on the Los Alamos Pegasus I and Pegasus II capacitor banks

    SciTech Connect

    Peterson, D.L.; Bowers, R.L.; Lebeda, C.F.; Matuska, W.; Benage, J.; Idzorek, G.; Oona, H.; Stokes, J.; Roderick, N.F.

    1995-09-01

    Two experiments, PegI-41, conducted on the Los Alamos Pegasus I capacitor bank, and PegII-25, on the Pegasus II bank, consisted of the implosions of 13 mg (nominal), 5 cm radius, 2 cm high thin cylindrical aluminum foils resulting in soft x-ray radiation pulses from the plasma thermalization on axis. The implosions were conducted in direct-drive (no intermediate switching) mode with peak currents of about 4 MA and 5 MA respectively, and implosion times of about 2.5 {micro}s and 2.0 {micro}s. A radiation yield of about 250 kJ was measured for PegII-25. The purpose of these experiments was to examine the physics of the implosion and relate this physics to the production of the radiation pulse and to provide detailed experimental data which could be compared with 2-D radiation-magnetohydrodynamic (RMHD) simulations. Included in the experimental diagnostic suites were faraday rotation and dB/dt current measurements, a visible framing camera, an x-ray stripline camera, time-dependent spectroscopy, bolometers and XRD`S. A comparison of the results from these experiments shows agreement with 2-D simulation results in the instability development, current, and radiation pulse data, including the pulsewidth, shape, peak power and total radiation yield as measured by bolometry. Instabilities dominate the behavior of the implosion and largely determine the properties of the resulting radiation pulse. The 2-D simulations can be seen to be an important tool in understanding the implosion physics.

  5. 2D gasdynamic simulation of the kinetics of an oxygen-iodine laser with electric-discharge generation of singlet oxygen

    SciTech Connect

    Chukalovsky, A. A.; Rakhimova, T. V.; Klopovsky, K. S.; Mankelevich, Yu. A.; Proshina, O. V.

    2011-03-15

    The kinetic processes occurring in an electric-discharge oxygen-iodine laser are analyzed with the help of a 2D (r, z) gasdynamic model taking into account transport of excited oxygen, singlet oxygen, and radicals from the electric discharge and their mixing with the iodine-containing gas. The main processes affecting the dynamics of the gas temperature and gain are revealed. The simulation results obtained using the 2D model agree well with the experimental data on the mixture gain. A subsonic oxygen-iodine laser in which singlet oxygen is generated by a 350 W transverse RF discharge excited in an oxygen flow at a pressure P = 10 Torr and the discharge tube wall is covered with mercury oxide is simulated. The simulated mixing system is optimized in terms of the flow rate and the degree of preliminary dissociation of the iodine flow. The optimal regime of continuous operation of a subsonic electric-discharge oxygen-iodine laser is found.

  6. [2D imaging simulations of a small animal PET scanner with DOI measurement: jPET-RD.].

    PubMed

    Yamaya, Taiga; Kitamura, Keishi; Hagiwara, Naoki; Obi, Takashi; Hasegawa, Tomoyuki; Yoshida, Eiji; Tsuda, Tomoaki; Inadama, Naoko; Wada, Yasuhiro; Murayama, Hideo

    2005-01-01

    We present a preliminary study on the design of a high sensitivity small animal DOI-PET scanner: jPET-RD (for Rodents with DOI detectors), which will contribute to molecular imaging. The 4-layer DOI block detector for the jPET-RD that consists of scintillation crystals (1.4 mm x 1.4 mm x 4.5 mm) and a flat panel position-sensitive photomultiplier tube (52 mm x 52 mm) was previously proposed. In this paper, we investigate imaging performance of the jPET-RD through numerical simulations. The scanner has a hexagonal geometry with a small diameter and a large axial aperture. Therefore DOI information is expected to improve resolution uniformity in the whole field of view (FOV). We simulate the scanner for various parameters of the number of DOI channels and the crystal length. Simulated data are reconstructed using the maximum likelihood expectation maximization with accurate system modeling. The trade-off results between background noise and spatial resolution show that only shortening the length of crystal does not improve the trade-off at all, and that 4-layer DOI information improves uniformity of spatial resolution in the whole FOV. Excellent performance of the jPET-RD can be expected based on the numerical simulation results. PMID:15961924

  7. Computer simulation of topological evolution in 2-d grain growth using a continuum diffuse-interface field model

    SciTech Connect

    Fan, D.; Geng, C.; Chen, L.Q.

    1997-03-01

    The local kinetics and topological phenomena during normal grain growth were studied in two dimensions by computer simulations employing a continuum diffuse-interface field model. The relationships between topological class and individual grain growth kinetics were examined, and compared with results obtained previously from analytical theories, experimental results and Monte Carlo simulations. It was shown that both the grain-size and grain-shape (side) distributions are time-invariant and the linear relationship between the mean radii of individual grains and topological class n was reproduced. The moments of the shape distribution were determined, and the differences among the data from soap froth. Potts model and the present simulation were discussed. In the limit when the grain size goes to zero, the average number of grain edges per grain is shown to be between 4 and 5, implying the direct vanishing of 4- and 5-sided grains, which seems to be consistent with recent experimental observations on thin films. Based on the simulation results, the conditions for the applicability of the familiar Mullins-Von Neumann law and the Hillert`s equation were discussed.

  8. PM2D code simulation of electronic dynamics and electro-magnetic fields generation by ultra-short laser pulses interaction with matter

    SciTech Connect

    Litvinenko, I. A.; Lykov, V. A.

    1997-04-15

    The results of numerical simulation of fast electrons motion and generated electro-magnetic fields at the picosecond pulse laser interaction with flat target are presented. The calculations were performed with PM2D code, where relativistic equation of electron motion joint with Maxwell equations is solved by particle method in cells. The efficiency of fast electrons energy conversion to the transverse electromagnetic wave of picosecond duration can reach the value 10{sup -4} for the intensity of ultrashort laser pulse at the target 10{sup 16}-10{sup 17} W/cm{sup 2}.

  9. On the accuracy of simulations of a 2D boundary layer with RANS models implemented in OpenFoam

    NASA Astrophysics Data System (ADS)

    Graves, Benjamin J.; Gomez, Sebastian; Poroseva, Svetlana V.

    2013-11-01

    The OpenFoam software is an attractive Computational Fluid Dynamics solver for evaluating new turbulence models due to the open-source nature, and the suite of existing standard model implementations. Before interpreting results obtained with a new model, a baseline for performance of the OpenFoam solver and existing models is required. In the current study we analyze the RANS models in the OpenFoam incompressible solver for two planar (two-dimensional mean flow) benchmark cases generated by the AIAA Turbulence Model Benchmarking Working Group (TMBWG): a zero-pressure-gradient flat plate and a bump-in-channel. The OpenFoam results are compared against both experimental data and simulation results obtained with the NASA CFD codes CFL3D and FUN3D. Sensitivity of simulation results to the grid resolution and model implementation are analyzed. Testing is conducted using the Spalart-Allmaras one-equation model, Wilcox's two-equation k-omega model, and the Launder-Reece-Rodi Reynolds-stress model. Simulations using both wall functions and wall-resolved (low Reynolds number) formulations are considered. The material is based upon work supported by NASA under award NNX12AJ61A.

  10. Hyporheic Exchange: Analysis of Aquifer Heterogeneity, Channel Morphology and Bedforms- 2D and 3D Simulations Using MODFLOW and MODPATH

    NASA Astrophysics Data System (ADS)

    Matos, J. R.; Welty, C.; Packman, A.

    2005-12-01

    The main purpose of the simulations in this research is the analysis of three-dimensional surface-groundwater interchange in heterogeneous systems. The effects of channel pattern, bed forms and aquifer heterogeneity on flow interactions between stream and groundwater systems are examined in order to contribute for a better understanding of the hyporheic process. A two-dimensional approach was also adopted to allow comparisons with the three-dimensional results. The grid was designed using the correlation scales of the heterogeneous fields and the scale of the stream meanders. MODFLOW and MODPATH were used to evaluate magnitude, direction and spatial distribution of the exchange flow. PMWIN and PMPATH were used as pre and post-processors during the construction of the models and analysis of results. Gaining and losing streams as well as parallel flow and flow across streams were simulated as idealized cases intended to describe how properties of the streambed and aquifer in low-gradient lowland streams contribute to hyporheic exchange. At first a straight river was analyzed then meandering streams were created with a sine curve and variations on wavelength and amplitude. Bed forms were simulated assuming a sinusoidal distribution of pressure head in the bed surface. Aspects of the influence of bedforms on mechanisms such as "pumping" and "turnover" are expected to be addressed with simulations. Flow velocities between 20 and 40 cm/s in the channel were tested with the objective of showing the influence of river morphology and natural bed forms on the flow exchange in the hyporheic zone. Several meander cycles and four levels of hydraulic conductivity variance were analyzed. Results of flow variances along the cross-sections and wetted perimeter show the increasing on hyporheic exchange as the degree of heterogeneity increases. Particle tracking was performed to define hyporheic residence time distributions. When comparing the homogeneous fields with all degrees of

  11. The effects of AGN feedback and SPH formulation on black hole growth in galaxies

    NASA Astrophysics Data System (ADS)

    Liu, MaoSheng; Di Matteo, Tiziana; Feng, Yu

    2016-05-01

    We perform simulations of isolated galaxies and major mergers to investigate the effects on black hole (BH) growth due to variations in active galactic nuclei (AGN) feedback models and different smooth particle hydrodynamic (SPH) solvers. In particular we examine density-SPH versus newer pressure-SPH formulation and their significance relative to minor changes in subgrid AGN feedback prescriptions. The aim is to use these idealized simulations to understand the impact of these effects for large cosmological volume simulations where these models are often adopted. In both isolated galaxies and galaxy mergers, we find that star formation histories are largely insensitive to the choice of SPH schemes whilst BH accretion rate can change. This can result in a factor of 2-3 difference in final BH mass for the two hydrodynamic formulations. However, the differences are much smaller than those obtained even with small changes in the subgrid AGN feedback prescription. In particular, depending on the size of the region and the manner in which the AGN energy is deposited, the star formation rate is suppressed by a factor of 2 in isolated galaxies and the star burst completely quenched during the coalescence of two galaxies. The final BH mass differs by over an order of magnitude by changes in AGN feedback model. Our results indicated that any change in the hydrodynamic formulation is likely subdominant to the effects of changing subgrid physics around the BH, although thermodynamic state and morphology of the gas remnant are also sensitive to the change in hydrodynamic solver.

  12. Section 1. Simulation of surface-water integrated flow and transport in two-dimensions: SWIFT2D user's manual

    USGS Publications Warehouse

    Schaffranek, Raymond W.

    2004-01-01

    A numerical model for simulation of surface-water integrated flow and transport in two (horizontal-space) dimensions is documented. The model solves vertically integrated forms of the equations of mass and momentum conservation and solute transport equations for heat, salt, and constituent fluxes. An equation of state for salt balance directly couples solution of the hydrodynamic and transport equations to account for the horizontal density gradient effects of salt concentrations on flow. The model can be used to simulate the hydrodynamics, transport, and water quality of well-mixed bodies of water, such as estuaries, coastal seas, harbors, lakes, rivers, and inland waterways. The finite-difference model can be applied to geographical areas bounded by any combination of closed land or open water boundaries. The simulation program accounts for sources of internal discharges (such as tributary rivers or hydraulic outfalls), tidal flats, islands, dams, and movable flow barriers or sluices. Water-quality computations can treat reactive and (or) conservative constituents simultaneously. Input requirements include bathymetric and topographic data defining land-surface elevations, time-varying water level or flow conditions at open boundaries, and hydraulic coefficients. Optional input includes the geometry of hydraulic barriers and constituent concentrations at open boundaries. Time-dependent water level, flow, and constituent-concentration data are required for model calibration and verification. Model output consists of printed reports and digital files of numerical results in forms suitable for postprocessing by graphical software programs and (or) scientific visualization packages. The model is compatible with most mainframe, workstation, mini- and micro-computer operating systems and FORTRAN compilers. This report defines the mathematical formulation and computational features of the model, explains the solution technique and related model constraints, describes the

  13. 2-D PSTD Simulation of the time-reversed ultrasound-encoded deep-tissue imaging technique

    PubMed Central

    Tseng, Snow H.; Ting, Wei-Lun; Wang, Shiang-Jiu

    2014-01-01

    We present a robust simulation technique to model the time-reversed ultrasonically encoded (TRUE) technique for deep-tissue imaging. The pseudospectral time-domain (PSTD) algorithm is employed to rigorously model the electromagnetic wave interaction of light propagating through a macroscopic scattering medium. Based upon numerical solutions of Maxwell’s equations, the amplitude and phase are accurately accounted for to analyze factors that affect the TRUE propagation of light through scattering media. More generally, we demonstrate the feasibility of modeling light propagation through a virtual tissue model of macroscopic dimensions with numerical solutions of Maxwell’s equations. PMID:24688821

  14. 2D/3D quench simulation using ANSYS for epoxy impregnated Nb3Sn high field magnets

    SciTech Connect

    Ryuji Yamada et al.

    2002-09-19

    A quench program using ANSYS is developed for the high field collider magnet for three-dimensional analysis. Its computational procedure is explained. The quench program is applied to a one meter Nb{sub 3}Sn high field model magnet, which is epoxy impregnated. The quench simulation program is used to estimate the temperature and mechanical stress inside the coil as well as over the whole magnet. It is concluded that for the one meter magnet with the presented cross section and configuration, the thermal effects due to the quench is tolerable. But we need much more quench study and improvements in the design for longer magnets.

  15. Simulation of Ultra-Small MOSFETs Using a 2-D Quantum-Corrected Drift-Diffusion Model

    NASA Technical Reports Server (NTRS)

    Biegel, Bryan A.; Rafferty, Conor S.; Yu, Zhiping; Dutton, Robert W.; Ancona, Mario G.; Saini, Subhash (Technical Monitor)

    1998-01-01

    We describe an electronic transport model and an implementation approach that respond to the challenges of device modeling for gigascale integration. We use the density-gradient (DG) transport model, which adds tunneling and quantum smoothing of carrier density profiles to the drift-diffusion model. We present the current implementation of the DG model in PROPHET, a partial differential equation solver developed by Lucent Technologies. This implementation approach permits rapid development and enhancement of models, as well as run-time modifications and model switching. We show that even in typical bulk transport devices such as P-N diodes and BJTs, DG quantum effects can significantly modify the I-V characteristics. Quantum effects are shown to be even more significant in small, surface transport devices, such as sub-0.1 micron MOSFETs. In thin-oxide MOS capacitors, we find that quantum effects may reduce gate capacitance by 25% or more. The inclusion of quantum effects in simulations dramatically improves the match between C-V simulations and measurements. Significant quantum corrections also occur in the I-V characteristics of short-channel MOSFETs due to the gate capacitance correction.

  16. Evolving detectors of 2D patterns on a simulated CAM-Brain machine: an evolvable hardware tool for building a 75-million-neuron artificial brain

    NASA Astrophysics Data System (ADS)

    de Garis, Hugo; Korkin, Michael; Guttikonda, Padma; Cooley, Donald

    2000-11-01

    This paper presents some simulation results of the evolution of 2D visual pattern recognizers to be implemented very shortly on real hardware, namely the 'CAM-Brain Machine' (CBM), an FPGA based piece of evolvable hardware which implements a genetic algorithm (GA) to evolve a 3D cellular automata (CA) based neural network circuit module, of approximately 1,000 neurons, in about a second, i.e. a complete run of a GA, with 10,000s of circuit growths and performance evaluations. Up to 65,000 of these modules, each of which is evolved with a humanly specified function, can be downloaded into a large RAM space, and interconnected according to humanly specified gvdvips -o SPIE-2000.ps SPIE-2000 artificial brain architectures. This RAM, containing an artificial brain with up to 75 million neurons, is then updated by the CBM at a rate of 130 billion CA cells per second. Such speeds will enable real time control of robots and hopefully the birth of a new research field that we call 'brain building.' The first such artificial brain, to be built at STARLAB in 2000 and beyond, will be used to control the behaviors of a life sized kitten robot called 'Robokitty.' This kitten robot will need 2D pattern recognizers in the visual section of its artificial brain. This paper presents simulation results on the evolvability and generalization properties of such recognizers.

  17. A zero-equation turbulent electron transport model for cross-field migration and its implementation in a 2-D hybrid plasma Hall thruster simulation

    NASA Astrophysics Data System (ADS)

    Cappelli, Mark; Young, Chris; Cha, Eusnun; Fernandez, Eduardo; Stanford Plasma Physics Laboratory Collaboration; Eckerd College Collaboration

    2015-09-01

    We present a simple, zero-equation turbulence model for electron transport across the magnetic field of a plasma Hall thruster and integrate this model into 2-D hybrid particle-in-cell simulations of a 72 mm diameter laboratory thruster operating at 400 W. The turbulent transport model is based on the assumption that the primary means of electron energy dissipation is the turbulent eddy cascade in the electron fluid to smaller scales. Implementing the model into 2-D hybrid simulations is relatively straightforward and leverages the existing framework for solving the electron fluid equations. We find that the model captures the strong axial variation in the mobility seen in experiments. In particular, it predicts the existence of a strong transport barrier which anchors the region of plasma acceleration. The model also captures the time-averaged experimental discharge current and its fluctuations due to ionization instabilities. We observe quantitative agreement with recent laser induced fluorescence measurements of time-averaged xenon ion and neutral velocities along the channel centerline. This work was supported by the Air Force Office of Scientific Research.

  18. Simulation of decay heat removal by natural convection in a pool type fast reactor model-ramona-with coupled 1D/2D thermal hydraulic code system

    SciTech Connect

    Kasinathan, N.; Rajakumar, A.; Vaidyanathan, G.; Chetal, S.C.

    1995-09-01

    Post shutdown decay heat removal is an important safety requirement in any nuclear system. In order to improve the reliability of this function, Liquid metal (sodium) cooled fast breeder reactors (LMFBR) are equipped with redundant hot pool dipped immersion coolers connected to natural draught air cooled heat exchangers through intermediate sodium circuits. During decay heat removal, flow through the core, immersion cooler primary side and in the intermediate sodium circuits are also through natural convection. In order to establish the viability and validate computer codes used in making predictions, a 1:20 scale experimental model called RAMONA with water as coolant has been built and experimental simulation of decay heat removal situation has been performed at KfK Karlsruhe. Results of two such experiments have been compiled and published as benchmarks. This paper brings out the results of the numerical simulation of one of the benchmark case through a 1D/2D coupled code system, DHDYN-1D/THYC-2D and the salient features of the comparisons. Brief description of the formulations of the codes are also included.

  19. Molecular dynamics simulation of soft grains: Malaria-infected red blood cells motion within obstructed 2-D capillary vessel

    NASA Astrophysics Data System (ADS)

    Haris, L.; Khotimah, S. N.; Haryanto, F.; Viridi, S.

    2014-02-01

    Molecular dynamics has been widely used to numerically solve equation of motion of classical many-particle system. It can be used to simulate many systems including biophysics, whose complexity level is determined by the involved elements. Based on this method, a numerical model had been constructed to mimic the behaviour of malaria-infected red blood cells within capillary vessel. The model was governed by three forces namely Coulomb force, normal force, and Stokes force. By utilizing two dimensional four-cells scheme, theoretical observation was carried out to test its capability. Although the parameters were chosen deliberately, all of the quantities were given arbitrary value. Despite this fact, the results were quite satisfactory. Combined with the previous results, it can be said that the proposed model were sufficient enough to mimic the malaria-infected red blood cells motion within obstructed capillary vessel.

  20. Uncertainty Assessments of 2D and Axisymmetric Hypersonic Shock Wave - Turbulent Boundary Layer Interaction Simulations at Compression Corners

    NASA Technical Reports Server (NTRS)

    Gnoffo, Peter A.; Berry, Scott A.; VanNorman, John W.

    2011-01-01

    This paper is one of a series of five papers in a special session organized by the NASA Fundamental Aeronautics Program that addresses uncertainty assessments for CFD simulations in hypersonic flow. Simulations of a shock emanating from a compression corner and interacting with a fully developed turbulent boundary layer are evaluated herein. Mission relevant conditions at Mach 7 and Mach 14 are defined for a pre-compression ramp of a scramjet powered vehicle. Three compression angles are defined, the smallest to avoid separation losses and the largest to force a separated flow engaging more complicated flow physics. The Baldwin-Lomax and the Cebeci-Smith algebraic models, the one-equation Spalart-Allmaras model with the Catrix-Aupoix compressibility modification and two-equation models including Menter SST, Wilcox k-omega 98, and Wilcox k-omega 06 turbulence models are evaluated. Each model is fully defined herein to preclude any ambiguity regarding model implementation. Comparisons are made to existing experimental data and Van Driest theory to provide preliminary assessment of model form uncertainty. A set of coarse grained uncertainty metrics are defined to capture essential differences among turbulence models. Except for the inability of algebraic models to converge for some separated flows there is no clearly superior model as judged by these metrics. A preliminary metric for the numerical component of uncertainty in shock-turbulent-boundary-layer interactions at compression corners sufficiently steep to cause separation is defined as 55%. This value is a median of differences with experimental data averaged for peak pressure and heating and for extent of separation captured in new, grid-converged solutions presented here. This value is consistent with existing results in a literature review of hypersonic shock-turbulent-boundary-layer interactions by Roy and Blottner and with more recent computations of MacLean.

  1. Formation of downstream high-speed jets by a rippled nonstationary quasi-parallel shock: 2-D hybrid simulations

    NASA Astrophysics Data System (ADS)

    Hao, Y.; Lembege, B.; Lu, Q.; Guo, F.

    2016-03-01

    Experimental observations from space missions (including more recently Cluster and Time History of Events and Macroscale Interactions during Substorms data) have clearly revealed the existence of high-speed jets (HSJs) in the downstream region of the quasi-parallel terrestrial bow shock. Presently, two-dimensional hybrid simulations are performed in order to investigate the formation of such HSJs through a rippled quasi-parallel shock front. The simulation results show that (i) such shock fronts are strongly nonstationary along the shock normal, and (ii) ripples are evidenced along the shock front as the upstream ULF waves (excited by interaction between incident and reflected ions) are convected back to the front by the solar wind and contribute to the rippling formation. Then, these ripples are inherent structures of a quasi-parallel shock. As a consequence, new incident solar wind ions interact differently at different locations along the shock surface, and the ion bulk velocity strongly differs locally as ions are transmitted downstream. Preliminary results show that (i) local bursty patterns of turbulent magnetic field may form within the rippled front and play the role of local secondary shock; (ii) some incident ion flows penetrate the front, suffer some deflection (instead of being decelerated) at the locations of these secondary shocks, and are at the origin of well-structured (filamentary) HSJs downstream; and (iii) the spatial scales of HSJs are in a good agreement with experimental observations. Such downstream HSJs are shown to be generated by local curvature effects (front rippling) and the nonstationarity of the shock front itself.

  2. AnisWave 2D

    Energy Science and Technology Software Center (ESTSC)

    2004-08-01

    AnisWave2D is a 2D finite-difference code for a simulating seismic wave propagation in fully anisotropic materials. The code is implemented to run in parallel over multiple processors and is fully portable. A mesh refinement algorithm has been utilized to allow the grid-spacing to be tailored to the velocity model, avoiding the over-sampling of high-velocity materials that usually occurs in fixed-grid schemes.

  3. Optoacoustic temperature monitoring during HIFU impact on biological tissues: ex vivo study and numerical simulations of 2D temperature reconstruction

    NASA Astrophysics Data System (ADS)

    Nikitin, Sergey; Khokhlova, Tatiana; Pelivanov, Ivan

    2012-02-01

    Dependencies of the optoacoustic (OA) transformation efficiency on tissue temperature were obtained for the application in OA temperature monitoring during thermal therapies. Accurate measurement of the OA signal amplitude versus temperature was performed in different ex-vivo tissues in the temperature range 25°C - 80°C. The investigated tissues were selected to represent different structural components: chicken breast (skeletal muscle), porcine lard (fatty tissue) and porcine liver (richly perfused tissue). Backward mode of the OA signal detection and a narrow probe laser beam were used in the experiments to avoid the influence of changes in light scattering with tissue coagulation on the OA signal amplitude. Measurements were performed in heating and cooling regimes. Characteristic behavior of the OA signal amplitude temperature dependences in different temperature ranges were described in terms of changes in different structural components of the tissue samples. Finally, numerical simulation of the OA temperature monitoring with a linear transducers array was performed to demonstrate the possibility of real-time temperature mapping.

  4. Fault steps and the dynamic rupture process: 2-D numerical simulations of a spontaneously propagating shear fracture

    NASA Astrophysics Data System (ADS)

    Harris, Ruth A.; Archuleta, Ralph J.; Day, Steven M.

    1991-05-01

    Fault steps may have controlled the sizes of the 1966 Parkfield, 1968 Borrego Mountain, 1979 Imperial Valley, 1979 Coyote Lake and the 1987 Superstition Hills earthquakes. This project investigates the effect of fault steps of various geometries on the dynamic rupture process. We have used a finite difference code to simulate spontaneous rupture propagation in two dimensions. We employ a slip-weakening fracture criterion as the condition for rupture propagation and examine how rupture on one plane initiates rupture on parallel fault planes. The geometry of the two parallel fault planes allows for stepover widths of 0.5 to 10.0 km and overlaps of -5 to 5 km. Our results demonstrate that the spontaneous rupture on the first fault segment continues to propagate onto the second fault segment for a range of geometries for both compressional and dilational fault steps. A major difference between the compressional and dilational cases is, that a dilational step requires a longer time delay between the rupture front reaching the end of the first fault segment and initiating rupture on the second segment. Therefore our dynamic study implies that a compressional step will be jumped quickly, whereas a dilational step will cause a time delay leading to a lower apparent rupture velocity. We also find that the rupture is capable of jumping a wider dilational step than compressional step.

  5. Fault steps and the dynamic rupture process: 2-D numerical simulations of a spontaneously propagating shear fracture

    SciTech Connect

    Harris, R.A.; Archuleta, R.J. ); Day, S.M. )

    1991-05-01

    Fault steps may have controlled the sizes of the 1966 Parkfield, 1968 Borrego Mountain, 1979 Imperial Valley, 1979 Coyote Lake and the 1987 Superstition Hills earthquakes. This project investigates the effect of fault steps of various geometries on the dynamic rupture process. The authors have used a finite difference code to simulate spontaneous rupture propagation in two dimensions. They employ a slip-weakening fracture criterion as the condition for rupture propagation and examine how rupture on one plane initiates rupture on parallel fault planes. The geometry of the two parallel fault planes allows for stepover widths of 0.5 to 10.0 m and overlaps of {minus}5 to 5 km. Results demonstrate that the spontaneous rupture on the first fault segment continues to propagate onto the second fault segment for a range of geometries for both compressional and dilational fault steps. A major difference between the compressional and dilational cases is that a dilational step requires a longer time delay between the rupture front reaching the end of the first fault segment and initiating rupture on the second segment. Therefore this dynamic study implies that a compressional step will be jumped quickly, whereas a dilational step will cause a time delay leading to a lower apparent rupture velocity. The authors also find that the rupture is capable of jumping a wider dilational step than compressional step.

  6. Global approach for transient shear wave inversion based on the adjoint method: a comprehensive 2D simulation study.

    PubMed

    Arnal, B; Pinton, G; Garapon, P; Pernot, M; Fink, M; Tanter, M

    2013-10-01

    Shear wave imaging (SWI) maps soft tissue elasticity by measuring shear wave propagation with ultrafast ultrasound acquisitions (10 000 frames s(-1)). This spatiotemporal data can be used as an input for an inverse problem that determines a shear modulus map. Common inversion methods are local: the shear modulus at each point is calculated based on the values of its neighbour (e.g. time-of-flight, wave equation inversion). However, these approaches are sensitive to the information loss such as noise or the lack of the backscattered signal. In this paper, we evaluate the benefits of a global approach for elasticity inversion using a least-squares formulation, which is derived from full waveform inversion in geophysics known as the adjoint method. We simulate an acoustic waveform in a medium with a soft and a hard lesion. For this initial application, full elastic propagation and viscosity are ignored. We demonstrate that the reconstruction of the shear modulus map is robust with a non-uniform background or in the presence of noise with regularization. Compared to regular local inversions, the global approach leads to an increase of contrast (∼+3 dB) and a decrease of the quantification error (∼+2%). We demonstrate that the inversion is reliable in the case when there is no signal measured within the inclusions like hypoechoic lesions which could have an impact on medical diagnosis. PMID:24018867

  7. New insights into the generalized Rutherford equation for nonlinear neoclassical tearing mode growth from 2D reduced MHD simulations

    NASA Astrophysics Data System (ADS)

    Westerhof, E.; de Blank, H. J.; Pratt, J.

    2016-03-01

    Two dimensional reduced MHD simulations of neoclassical tearing mode growth and suppression by ECCD are performed. The perturbation of the bootstrap current density and the EC drive current density perturbation are assumed to be functions of the perturbed flux surfaces. In the case of ECCD, this implies that the applied power is flux surface averaged to obtain the EC driven current density distribution. The results are consistent with predictions from the generalized Rutherford equation using common expressions for Δ \\text{bs}\\prime and Δ \\text{ECCD}\\prime . These expressions are commonly perceived to describe only the effect on the tearing mode growth of the helical component of the respective current perturbation acting through the modification of Ohm’s law. Our results show that they describe in addition the effect of the poloidally averaged current density perturbation which acts through modification of the tearing mode stability index. Except for modulated ECCD, the largest contribution to the mode growth comes from this poloidally averaged current density perturbation.

  8. Simulation Study of the Robust Closed-Loop Control of a 2D High-Lift Configuration

    NASA Astrophysics Data System (ADS)

    Günther, B.; Carnarius, A.; Thiele, F.; Becker, R.; King, R.

    The investigation focuses on the closed-loop separation control of a two dimensional high-lift configuration in a numerical simulation study. The lift is to be controlled by adjusting the non-dimensional intensity of the harmonic excitation near the leading edge of the single slotted flap. Since control laws based on a high-dimensional discretisation or low-dimensional description of the Navier-Stokes equations are not applicable in real-time, this investigation presents a fast and efficient controller synthesis methodology employing robust methods. This offers real-time capability for future experimental implementations. In spite of the nonlinear and infinite-dimensional Navier-Stokes equations, it is surprising to observe that the dynamic behaviour appears very simple. This input-output behaviour in the vicinity of set points can be empirically approximated by stable linear black-box models of second order. Based on these, a simple robust controller is synthesised that autonomously adjusts the excitation such that a desired lift is obtained.

  9. Techniques utilized in the simulated altitude testing of a 2D-CD vectoring and reversing nozzle

    NASA Technical Reports Server (NTRS)

    Block, H. Bruce; Bryant, Lively; Dicus, John H.; Moore, Allan S.; Burns, Maureen E.; Solomon, Robert F.; Sheer, Irving

    1988-01-01

    Simulated altitude testing of a two-dimensional, convergent-divergent, thrust vectoring and reversing exhaust nozzle was accomplished. An important objective of this test was to develop test hardware and techniques to properly operate a vectoring and reversing nozzle within the confines of an altitude test facility. This report presents detailed information on the major test support systems utilized, the operational performance of the systems and the problems encountered, and test equipment improvements recommended for future tests. The most challenging support systems included the multi-axis thrust measurement system, vectored and reverse exhaust gas collection systems, and infrared temperature measurement systems used to evaluate and monitor the nozzle. The feasibility of testing a vectoring and reversing nozzle of this type in an altitude chamber was successfully demonstrated. Supporting systems performed as required. During reverser operation, engine exhaust gases were successfully captured and turned downstream. However, a small amount of exhaust gas spilled out the collector ducts' inlet openings when the reverser was opened more than 60 percent. The spillage did not affect engine or nozzle performance. The three infrared systems which viewed the nozzle through the exhaust collection system worked remarkably well considering the harsh environment.

  10. Application of the SPH method to solitary wave impact on an offshore platform

    NASA Astrophysics Data System (ADS)

    Pan, K.; IJzermans, R. H. A.; Jones, B. D.; Thyagarajan, A.; van Beest, B. W. H.; Williams, J. R.

    2016-04-01

    This paper investigates the interaction between large waves and floating offshore structures. Here, the fluid-structure interaction is considered using the weakly compressible smoothed particle hydrodynamics (SPH) method. To ensure the applicability of this method, we validate its prediction for fluid forces and rigid-body motion against two sets of experimental data. These are impact due to dam break, and wave induced motion of a floating cube. For the dam break problem, the SPH method is used to predict impact forces on a rectangular column located downstream. In the second case of a floating cube, the SPH method simulates the motion of a buoyant cube under the action of induced waves, where a wall placed upstream of the cube is displaced sinusoidally to induce waves. In both cases, the SPH framework implemented is able to accurately reproduce the experimental results. Following validation, we apply this framework to simulation of a toy model of a tension-leg platform upon impact of a large solitary wave. This analysis shows that the platform may be pulled into the water by stretched tension legs, where the extension of the tension legs also governs the rotational behavior of the platform. The result also indicates that a tension-leg platform is very unlikely to topple over during the arrival of an extreme wave.

  11. Effect of bone cortical thickness on velocity measurements using ultrasonic axial transmission: A 2D simulation study

    NASA Astrophysics Data System (ADS)

    Bossy, Emmanuel; Talmant, Maryline; Laugier, Pascal

    2002-07-01

    In recent years, quantitative ultrasound (QUS) has played an increasing role in the assessment of bone status. The axial transmission technique allows to investigate skeletal sites such as the cortical layer of long bones (radius, tibia), inadequate to through-transmission techniques. Nevertheless, the type of propagation involved along bone specimens has not been clearly elucidated. Axial transmission is investigated here by means of two-dimensional simulations at 1 MHz. We focus our interest on the apparent speed of sound (SOS) of the first arriving signal (FAS). Its dependence on the thickness of the plate is discussed and compared to previous work. Different time criteria are used to derive the apparent SOS of the FAS as a function of source-receiver distance. Frequency-wave number analysis is performed in order to understand the type of propagation involved. For thick plates (thickness>lambdabone, longitudinal wavelength in bone), and for a limited range of source-receiver distances, the FAS corresponds to the lateral wave. Its velocity equals the longitudinal bulk velocity of the bone. For plate thickness less than lambdabone, some plate modes contribute to the FAS, and the apparent SOS decreases with the thickness in a way that depends on both the time criterion and on the source-receiver distance. The FAS corresponds neither to the lateral wave nor to a single plate mode. For very thin plates (thicknessbone)/4, the apparent SOS tends towards the velocity of the lowest order symmetrical vibration mode (S0 Lamb mode). copyright 2002 Acoustical Society of America.

  12. A pseudo-spectral method for the simulation of poro-elastic seismic wave propagation in 2D polar coordinates using domain decomposition

    NASA Astrophysics Data System (ADS)

    Sidler, Rolf; Carcione, José M.; Holliger, Klaus

    2013-02-01

    We present a novel numerical approach for the comprehensive, flexible, and accurate simulation of poro-elastic wave propagation in 2D polar coordinates. An important application of this method and its extensions will be the modeling of complex seismic wave phenomena in fluid-filled boreholes, which represents a major, and as of yet largely unresolved, computational problem in exploration geophysics. In view of this, we consider a numerical mesh, which can be arbitrarily heterogeneous, consisting of two or more concentric rings representing the fluid in the center and the surrounding porous medium. The spatial discretization is based on a Chebyshev expansion in the radial direction and a Fourier expansion in the azimuthal direction and a Runge-Kutta integration scheme for the time evolution. A domain decomposition method is used to match the fluid-solid boundary conditions based on the method of characteristics. This multi-domain approach allows for significant reductions of the number of grid points in the azimuthal direction for the inner grid domain and thus for corresponding increases of the time step and enhancements of computational efficiency. The viability and accuracy of the proposed method has been rigorously tested and verified through comparisons with analytical solutions as well as with the results obtained with a corresponding, previously published, and independently benchmarked solution for 2D Cartesian coordinates. Finally, the proposed numerical solution also satisfies the reciprocity theorem, which indicates that the inherent singularity associated with the origin of the polar coordinate system is adequately handled.

  13. A pseudo-spectral method for the simulation of poro-elastic seismic wave propagation in 2D polar coordinates using domain decomposition

    SciTech Connect

    Sidler, Rolf; Carcione, José M.; Holliger, Klaus

    2013-02-15

    We present a novel numerical approach for the comprehensive, flexible, and accurate simulation of poro-elastic wave propagation in 2D polar coordinates. An important application of this method and its extensions will be the modeling of complex seismic wave phenomena in fluid-filled boreholes, which represents a major, and as of yet largely unresolved, computational problem in exploration geophysics. In view of this, we consider a numerical mesh, which can be arbitrarily heterogeneous, consisting of two or more concentric rings representing the fluid in the center and the surrounding porous medium. The spatial discretization is based on a Chebyshev expansion in the radial direction and a Fourier expansion in the azimuthal direction and a Runge–Kutta integration scheme for the time evolution. A domain decomposition method is used to match the fluid–solid boundary conditions based on the method of characteristics. This multi-domain approach allows for significant reductions of the number of grid points in the azimuthal direction for the inner grid domain and thus for corresponding increases of the time step and enhancements of computational efficiency. The viability and accuracy of the proposed method has been rigorously tested and verified through comparisons with analytical solutions as well as with the results obtained with a corresponding, previously published, and independently benchmarked solution for 2D Cartesian coordinates. Finally, the proposed numerical solution also satisfies the reciprocity theorem, which indicates that the inherent singularity associated with the origin of the polar coordinate system is adequately handled.

  14. Simulations of magnetic reconnection with Parsek2D-MLMD, a new Multi Level Multi Domain (MLMD) Implicit Moment Method (IMM) Particle in Cell (PIC) code

    NASA Astrophysics Data System (ADS)

    Innocenti, M.; Beck, A.; Lapenta, G.; Markidis, S.

    2012-12-01

    The kinetic simulation of intrinsically multi scale processes such as magnetic reconnection events with realistic mass ratios is a daunting task for explicit Particle In Cell (PIC) codes, which require to use resolutions of the order of the electron Debye length even when simulating dramatically bigger domains. As an example, a simulation of reconnection in the magnetotail, with domain sizes of the order of 20 di x 10 di (˜ 7.2 106 m x 3.6 106 m, with di being the ion skin depth) and a resolution of λD,e= 687 m, with λD,e the electron Debye length, requires the astounding number of 10500 x 5240 cells. Higher grid spacings can be used if the simulation is performed with an implicit PIC code, which substitutes a much less strict accuracy constraint to the stability constraint of explicit PIC codes. The same reconnection problem as before can be simulated, with an implicit PIC code resolving the scale of interest of de /2 instead of the electron Debye length (de is the electron skin depth), with the much more manageable number of 1920 x 958 cells. However, an even smaller number of cells can be used if, instead of using the same, high resolution on the entire domain, the domain to simulate is divided into subdomains each resolved with a grid spacing related to the physical scale of interest in the specific subdomain. In the case of reconnection, the division which immediately springs to mind is between electron diffusion region, ion diffusion region and outer region, where resolutions respectively of the order of fractions of the electron skin depth, of the ion skin depth and bigger can be used. We present here a new Multi Level Multi Domain (MLMD) Implicit Moment Method (IMM) Particle In Cell (PIC) code, Parsek2D-MLMD, able to perform simulations of magnetic reconnection where the expensive high resolutions are used only when needed, while the rest of the domain is simulated with grid spacings chosen according to the local scales of interest. The major difference

  15. The relationship between substructure in 2D X-ray surface brightness images and weak-lensing mass maps of galaxy clusters: a simulation study

    NASA Astrophysics Data System (ADS)

    Powell, Leila C.; Kay, Scott T.; Babul, Arif

    2009-12-01

    Recent X-ray and weak-lensing observations of galaxy clusters have revealed that the hot gas does not always directly trace the dark matter within these systems. Such configurations are extremely interesting. They offer a new vista on to the complex interplay between gravity and baryonic physics, and may even be used as indicators of the clusters' dynamical state. In this paper, we undertake a study to determine what insight can be reliably gleaned from the comparison of the X-ray and the weak-lensing mass maps of galaxy clusters. We do this by investigating the two-dimensional (2D) substructure within three high-resolution cosmological simulations of galaxy clusters. Our main results focus on non-radiative gas dynamics, but we also consider the effects of radiative cooling at high redshift. For our analysis, we use a novel approach, based on unsharp-masking, to identify substructures in 2D surface mass density and X-ray surface brightness maps. At full resolution (~15h-1 kpc), this technique is capable of identifying almost all self-bound dark matter subhaloes with M > 1012h-1Msolar. We also report a correlation between the mass of a subhalo and the area of its corresponding 2D detection; such a correlation, once calibrated, could provide a useful estimator for substructure mass. Comparing our 2D mass and X-ray substructures, we find a surprising number of cases where the matching fails: around one-third of galaxy-sized substructures have no X-ray counterpart. Some interesting cases are also found at larger masses, in particular the cores of merging clusters where the situation can be complex. Finally, we degrade our mass maps to what is currently achievable with weak-lensing observations (~100h-1kpc at z = 0.2). While the completeness mass limit increases by around an order of magnitude, a mass-area correlation remains. Our paper clearly demonstrates that the next generation of lensing surveys should start to reveal a wealth of information on cluster substructure.

  16. Characteristics of the O+(2P-2D) 732.0 and 733.0 nm airglow emissions observed with WINDII and simulated with the C-IAM

    NASA Astrophysics Data System (ADS)

    Shepherd, Gordon G.; Cho, Young-Min; Fomichev, Victor I.; Martynenko, Oleg V.

    2014-08-01

    This paper provides new data on the O+(2P-2D) 732 nm and 733 nm daytime airglow emissions that enhance our understanding of the role that local and conjugate photoelectrons play in the excitation of this emission, updating earlier investigations of its production by solar EUV photoionization of neutral atomic oxygen. The Wind Imaging Interferometer on the Upper Atmosphere Research Satellite, launched in 1991, retrieved these emissions using a filter primarily intended for observations of the hydroxyl P1(2) line but with invalid results. The first corrected results are presented here and compared with simulations by the Canadian Ionosphere and Atmosphere Model. Reasonable agreement is obtained in terms of vertical profiles, solar flux, and solar zenith angle variations. Observations made during local twilight demonstrate that conjugate photoelectrons do not contribute to the excitation of this emission. This paves the way for future determinations of atomic oxygen concentrations.

  17. 2D and 3D Visualizations of the Fault Areas, Initial Heights and Tsunami Simulations of Five Largest Historical Earthquakes in Mediterrenean Region.

    NASA Astrophysics Data System (ADS)

    Gürleme, Beran; Tarık Meriç, Hakan; Ulutaş, Ergin; Anunziato, Alessandro

    2016-04-01

    The aim of this study is the simulation and visualization of the initial and maximum tsunami wave heights in 2D and 3D along the Mediterranean coasts inferred from the five largest earthquakes in history in this region. The earthquakes considered in the study are 21 July 365 Crete, 8 August 1303 Crete, 3 May 1481 Rhodes, 28 December Messina and 21 May 2003 Algeria. All these earthquakes spawned tsunamis and inflicted damage in coastal regions. The study was conducted to explain which could be the potential Tsunami consequences caused by similar earthquakes occurring in the region in the future. The methodology used for the calculation of tsunami wave heights from the earthquakes includes the determination of earthquake parameters, modeling of the initial wave height, simulation of the wave propagation and calculation of the maximum wave heights near coastal areas. The parameters of the earthquakes are based on previously published fault mechanism solutions and known tectonic features of the regions. Static dislocation algorithm for the initial wave height is used from the parameters of focal mechanism solutions. The study was conducted also to understand the reliability of the previously published focal mechanism solutions for the earthquakes by using the principal stress axis in the regions. The 2D and 3D visualized models of tsunamis from the earthquakes include isometric grid representing the sea surface for the purpose of a better understanding of the initial tsunami mechanism compared to 1D visualizations. In many studies, the earthquake locations, tectonic features of the regions, initial heights and tsunami simulations are shown on maps as bird's eye in 1D visualization. However these kinds of features are related in depths and bathymetric features. For that reason, our approaches will contribute to have better understanding where the uplift- subsidence of initial heights and crests-troughs of simulated wave heights and thus provide a better insight of the

  18. Respiratory motion compensation for simultaneous PET/MR based on a 3D-2D registration of strongly undersampled radial MR data: a simulation study

    NASA Astrophysics Data System (ADS)

    Rank, Christopher M.; Heußer, Thorsten; Flach, Barbara; Brehm, Marcus; Kachelrieß, Marc

    2015-03-01

    We propose a new method for PET/MR respiratory motion compensation, which is based on a 3D-2D registration of strongly undersampled MR data and a) runs in parallel with the PET acquisition, b) can be interlaced with clinical MR sequences, and c) requires less than one minute of the total MR acquisition time per bed position. In our simulation study, we applied a 3D encoded radial stack-of-stars sampling scheme with 160 radial spokes per slice and an acquisition time of 38 s. Gated 4D MR images were reconstructed using a 4D iterative reconstruction algorithm. Based on these images, motion vector fields were estimated using our newly-developed 3D-2D registration framework. A 4D PET volume of a patient with eight hot lesions in the lungs and upper abdomen was simulated and MoCo 4D PET images were reconstructed based on the motion vector fields derived from MR. For evaluation, average SUVmean values of the artificial lesions were determined for a 3D, a gated 4D, a MoCo 4D and a reference (with ten-fold measurement time) gated 4D reconstruction. Compared to the reference, 3D reconstructions yielded an underestimation of SUVmean values due to motion blurring. In contrast, gated 4D reconstructions showed the highest variation of SUVmean due to low statistics. MoCo 4D reconstructions were only slightly affected by these two sources of uncertainty resulting in a significant visual and quantitative improvement in terms of SUVmean values. Whereas temporal resolution was comparable to the gated 4D images, signal-to-noise ratio and contrast-to-noise ratio were close to the 3D reconstructions.

  19. galaxy formation and evolution with an improved SPH code

    NASA Astrophysics Data System (ADS)

    Zhu, Qirong; Li, Y.

    2014-01-01

    We present the results with an updated version of Gadget-3. Our improvements over the original version include both modifications on SPH algorithms and physical processes relevant to galaxy formation and evolution. A smoother kernel is used to reduce the noise of force calculation. Discontinuities and sub-sonic turbulence are treated with a time dependent conduction term and a time dependent viscosity term. The new code successfully handles the KH/RT instabilities. A new set of metal dependent cooling/heating functions is computed self-consistently to account for the ionizing UV background from galaxies and QSOs. Meanwhile we also updated the star formation model and black hole accretion model. With all of these improvement, our code can produce more realistic disk galaxies compared to previous work. Future simulations with this new code will give us more reliable results and enable us to better understand galaxy formation and evolution in greater detail and accuracy.

  20. VIBA-Lab 3.0: Computer program for simulation and semi-quantitative analysis of PIXE and RBS spectra and 2D elemental maps

    NASA Astrophysics Data System (ADS)

    Orlić, Ivica; Mekterović, Darko; Mekterović, Igor; Ivošević, Tatjana

    2015-11-01

    VIBA-Lab is a computer program originally developed by the author and co-workers at the National University of Singapore (NUS) as an interactive software package for simulation of Particle Induced X-ray Emission and Rutherford Backscattering Spectra. The original program is redeveloped to a VIBA-Lab 3.0 in which the user can perform semi-quantitative analysis by comparing simulated and measured spectra as well as simulate 2D elemental maps for a given 3D sample composition. The latest version has a new and more versatile user interface. It also has the latest data set of fundamental parameters such as Coster-Kronig transition rates, fluorescence yields, mass absorption coefficients and ionization cross sections for K and L lines in a wider energy range than the original program. Our short-term plan is to introduce routine for quantitative analysis for multiple PIXE and XRF excitations. VIBA-Lab is an excellent teaching tool for students and researchers in using PIXE and RBS techniques. At the same time the program helps when planning an experiment and when optimizing experimental parameters such as incident ions, their energy, detector specifications, filters, geometry, etc. By "running" a virtual experiment the user can test various scenarios until the optimal PIXE and BS spectra are obtained and in this way save a lot of expensive machine time.

  1. Appropriate solid-body models as initial conditions for SPH-based numerical collision experiments

    NASA Astrophysics Data System (ADS)

    Burger, C.; Maindl, T. I.; Dvorak, R.; Schäfer, C.; Speith, R.

    2016-02-01

    Providing the simulation algorithm with suitable initial conditions is a crucial first step in almost all numerical computations, except for the most trivial cases. Even the most sophisticated simulation program will not produce meaningful results if not started with an appropriate initial configuration, satisfying demands like isotropy, a low level of noise and physical accuracy. Some of these requirements are unique to Smoothed Particle Hydrodynamics (SPH) - the numerical method considered here - others are of fundamental relevance, independent of the chosen numerical technique. The main focus of this work lies on considerations concerning initial conditions for subsequent SPH simulation runs. The geometrical arrangement of an initial SPH particle setup is discussed, particularly w.r.t. regular lattice configurations and associated symmetry effects. In order to avoid unphysical behavior the initial particle configuration has to be in a relaxed (i.e. equilibrated) state where necessary. This is of particular importance for simulations of giant collisions, where the involved bodies naturally exhibit a hydrostatic internal structure. Beyond the common numerical procedure, a semi-analytical approach for relaxation is introduced and validated, practically eliminating the need for spending significant amounts of valuable computing time solely for the production of a relaxed initial state in a lot of situations. Finally the basic relevance of relaxation itself is studied, focusing on collision simulations in different mass ranges important in the context of planet formation and the transport of water.

  2. Probabilistic hazard analysis of dense Pyroclastic Density Currents at Vesuvius (Italy) via parametric uncertainty characterization of TITAN2D numerical simulator

    NASA Astrophysics Data System (ADS)

    Tierz, Pablo; Ramona Stefanescu, Elena; Sandri, Laura; Patra, Abani; Marzocchi, Warner; Sulpizio, Roberto

    2014-05-01

    Probabilistic hazard assessments of Pyroclastic Density Currents (PDCs) are of great interest for decision-making purposes. However, there is a limited number of published works available on this topic. Recent advances in computation and statistical methods are offering new opportunities beyond the classical Monte Carlo (MC) sampling which is known as a simple and robust method but it usually turns out to be slow and computationally intractable. In this work, Titan2D numerical simulator has been coupled to Polynomial Chaos Quadrature (PCQ) to propagate the simulator parametric uncertainty and compute VEI-based probabilistic hazard maps of dense PDCs formed as a result of column collapse at Vesuvius volcano, Italy. Due to the lack of knowledge about the exact conditions under which these PDCs will form, Probability Distribution Functions (PDFs) are assigned to the simulator input parameters (Bed Friction Angle and Volume) according to three VEI sizes. Uniform distributions were used for both parameters since there is insufficient information to assume that any value in the range is more likely that any other value. Reasonable (and compatible) ranges for both variables were constrained according to past eruptions at Vesuvius volcanic system. On the basis of reasoning above a number of quadrature points were taken within those ranges, which resulted in one execution of the TITAN2D code at each quadrature point. With a computational cost several orders of magnitude smaller than MC, exceedance probabilities for a given threshold of flow depth (and conditional to the occurrence of VEI3, VEI4 and VEI5 eruptions) were calculated using PCQ. Moreover, PCQ can be run at different threshold values of the same output variable (flow depth, speed, kinetic energy, …) and, therefore, it can serve to compute Exceedance Probability curves (aka hazard curves) at singular points inside the hazard domain, representing the most important and useful scientific input to quantitative risk

  3. Short-term groundwater fluxes in the hyporheic zone as a consequence of changing river stages; numerical simulation by HYDRUS 2D/3D.

    NASA Astrophysics Data System (ADS)

    Wyseure, Guido; Chou, Po-Yi

    2010-05-01

    All hydrological handbooks contain methods for direct runoff and base-flow separation. The semi-log separation method is the most classical one. One can, however, question the physical base for such method. In addition, the water fluxes in the riverbed are important for ecology and water quality. In our study an 2-D cross-section including the river and the surrounding aquifer was set-up in HYDRUS 2D/3D. Initial conditions were a steady-state subsurface flow feeding the river with a recharge from the soil surface. A surface runoff event was simulated by a rise and recession of the water level in the river. Differences between summer and winter situation were explored by given representative temperatures to the different components of the river-aquifer system. The simulations show that the fluxes are very different along the riverbed. Even during steady state baseflow we see that the fluxes through the bottom were 2 to 3 times smaller as compared to the side banks. During the hydrographs the proportion can become up to 5 times. Another interesting result is that within the time frame of the hydrograph and its immediate recession relatively little water, which pentetrated in the aquifer, returns to the river. Most of the water replenishes the aquifer and there is only a very small rise of baseflow. In our simulation we returned to the original level as before the hydrograph, so in reality even less or no rise in baseflow may occur immediately after a hydrograph. Of course, in a longer time-frame the recharge of the aquifer will give a rise to the actual subsurface drainage. The change in seasonal temperatures within the river-aquifer system has a substantial effect. For identical river stage hydrograph changes the hyporheic exchange fluxes are more intense in summer than in winter. If we define the hyporheic zone as the extedn to which the water fluxes from the river can penetrate, then we see that this zone is wider on the sides as compared to the bottom of the

  4. Effects of Precipitation on Ocean Mixed-Layer Temperature and Salinity as Simulated in a 2-D Coupled Ocean-Cloud Resolving Atmosphere Model

    NASA Technical Reports Server (NTRS)

    Li, Xiaofan; Sui, C.-H.; Lau, K-M.; Adamec, D.

    1999-01-01

    A two-dimensional coupled ocean-cloud resolving atmosphere model is used to investigate possible roles of convective scale ocean disturbances induced by atmospheric precipitation on ocean mixed-layer heat and salt budgets. The model couples a cloud resolving model with an embedded mixed layer-ocean circulation model. Five experiment are performed under imposed large-scale atmospheric forcing in terms of vertical velocity derived from the TOGA COARE observations during a selected seven-day period. The dominant variability of mixed-layer temperature and salinity are simulated by the coupled model with imposed large-scale forcing. The mixed-layer temperatures in the coupled experiments with 1-D and 2-D ocean models show similar variations when salinity effects are not included. When salinity effects are included, however, differences in the domain-mean mixed-layer salinity and temperature between coupled experiments with 1-D and 2-D ocean models could be as large as 0.3 PSU and 0.4 C respectively. Without fresh water effects, the nocturnal heat loss over ocean surface causes deep mixed layers and weak cooling rates so that the nocturnal mixed-layer temperatures tend to be horizontally-uniform. The fresh water flux, however, causes shallow mixed layers over convective areas while the nocturnal heat loss causes deep mixed layer over convection-free areas so that the mixed-layer temperatures have large horizontal fluctuations. Furthermore, fresh water flux exhibits larger spatial fluctuations than surface heat flux because heavy rainfall occurs over convective areas embedded in broad non-convective or clear areas, whereas diurnal signals over whole model areas yield high spatial correlation of surface heat flux. As a result, mixed-layer salinities contribute more to the density differences than do mixed-layer temperatures.

  5. An extension of Godunov SPH: Application to negative pressure media

    NASA Astrophysics Data System (ADS)

    Sugiura, Keisuke; Inutsuka, Shu-ichiro

    2016-03-01

    The modification of Smoothed Particle Hydrodynamics (SPH) method with Riemann Solver is called Godunov SPH. We further extend the Godunov SPH to the description of a medium with negative pressure. Under certain circumstances, the SPH method shows an unphysical instability that results in particle clustering. This instability is called the tensile instability. The tensile instability occurs in positive pressure regions in a regular fluid if a very large number of neighbor particles are used with certain shapes of kernel functions, and it is significant in negative pressure regions that emerge in stretched elastic bodies. We must suppress the tensile instability in SPH for calculations of elastic bodies. In this study, we develop a new technique to remove the tensile instability by extending the Godunov SPH method and conducting a linear stability analysis of the equation of motion for the extended method. We find that the tensile instability can be suppressed by choosing an appropriate order of interpolation in the equation of motion of the Godunov SPH method. We also derive an analytic solution for a Riemann solver for a simple equation of state of an elastic body, and construct a Godunov SPH method for the equation of state that allows negative pressure.

  6. Vlasov simulation of 2D Modulational Instability of Ion Acoustic Waves and Prospects for Modeling such instabilities in Laser Propagation Codes

    NASA Astrophysics Data System (ADS)

    Berger, Richard; Chapman, T.; Banks, J. W.; Brunner, S.

    2015-11-01

    We present 2D+2V Vlasov simulations of Ion Acoustic waves (IAWs) driven by an external traveling-wave potential, ϕ0 (x , t) , with frequency, ω, and wavenumber, k, obeying the kinetic dispersion relation. Both electrons and ions are treated kinetically. Simulations with ϕ0 (x , t) , localized transverse to the propagation direction, model IAWs driven in a laser speckle. The waves bow with a positive or negative curvature of the wave fronts that depends on the sign of the nonlinear frequency shift ΔωNL , which is in turn determined by the magnitude of ZTe /Ti where Z is the charge state and Te , i is the electron, ion temperature. These kinetic effects result can cause modulational and self-focusing instabilities that transfer wave energy to kinetic energy. Linear dispersion properties of IAWs are used in laser propagation codes that predict the amount of light reflected by stimulated Brillouin scattering. At high enough amplitudes, the linear dispersion is invalid and these kinetic effects should be incorporated. Including the spatial and time scales of these instabilities is computationally prohibitive. We report progress including kinetic models in laser propagation codes. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344 and funded by the Laboratory Research and Development Program at LLNL under project tracking code 15.

  7. Molecular Dynamics Simulations to Investigate the Influences of Amino Acid Mutations on Protein Three-Dimensional Structures of Cytochrome P450 2D6.1, 2, 10, 14A, 51, and 62

    PubMed Central

    Watanabe, Yurie; Hiratsuka, Masahiro; Yamaotsu, Noriyuki; Hirono, Shuichi; Manabe, Noriyoshi; Takahashi, Ohgi; Oda, Akifumi

    2016-01-01

    Many natural mutants of the drug metabolizing enzyme cytochrome P450 (CYP) 2D6 have been reported. Because the enzymatic activities of many mutants are different from that of the wild type, the genetic polymorphism of CYP2D6 plays an important role in drug metabolism. In this study, the molecular dynamics simulations of the wild type and mutants of CYP2D6, CYP2D6.1, 2, 10, 14A, 51, and 62 were performed, and the predictions of static and dynamic structures within them were conducted. In the mutant CYP2D6.10, 14A, and 61, dynamic properties of the F-G loop, which is one of the components of the active site access channel of CYP2D6, were different from that of the wild type. The F-G loop acted as the “hatch” of the channel, which was closed in those mutants. The structure of CYP2D6.51 was not converged by the simulation, which indicated that the three-dimensional structure of CYP2D6.51 was largely different from that of the wild type. In addition, the intramolecular interaction network of CYP2D6.10, 14A, and 61 was different from that of the wild type, and it is considered that these structural changes are the reason for the decrease or loss of enzymatic activities. On the other hand, the static and dynamic properties of CYP2D6.2, whose activity was normal, were not considerably different from those of the wild type. PMID:27046024

  8. Fractal and fractional calculus to model hydrological processes with application to particle-based 2D and 3D landslide simulation

    NASA Astrophysics Data System (ADS)

    Martelloni, Gianluca; Bagnoli, Franco; Di Cintio, Pierfrancesco

    2015-04-01

    We integrate existing soil infiltration modeling with particle based methods in order to simulate two and three-dimensional setups of triggered landslides. Commonly, the infiltration models are based on continuum schemes (e.g. Eulerian approach) by means of which it is possible to define the field of the pore pressure within a soil. By contrast, the particle based methods follow a Lagrangian scheme that allows one to identify the particle trajectories and their dynamical properties. In this work, in order to simulate the triggering mechanism, we apply the classical, fractal and fractional Richards equations and the Mohr-Coulomb failure criterion, adapted to the molecular dynamics technique. In our scheme the (local) positive pore pressure is simply implemented as a perturbation of the rest state of each grain. Therefore, the pore pressure function can be interpreted as a time-space dependent scalar field acting on each particle. To initialize the system we generate, using a molecular dynamics based algorithm, a mechanically stable disk (2D) or sphere (3D) packing simulating the consolidated soil. In this way, we can built the micro and macro pore structure related to different infiltration time scales. The inter-particle interactions are modeled with a Lennard-Jones like potential. The particle positions are updated in time, after and during a rainfall, with standard molecular dynamics. We analyze the sensitivity of the model with respect to the variation of some parameters such as hydraulic conductivity, cohesion, slope and friction angle, soil depth and fractional order of the generalized infiltration model. In addition, we consider both regular and random particle configurations. The results of our simulations are found to be in agreement with real landslides. In particular, the mean velocity patterns of the simulated landslides appear extremely similar to the observed ones. Moreover, it is possible to apply the method of the inverse surface displacement

  9. Evidence of downstream high speed jets by a non-stationary and rippled front of quasi-parallel shock: 2-D hybrid simulations

    NASA Astrophysics Data System (ADS)

    Hao, Yufei; Lu, Quanming; Lembege, Bertrand; Huang, Can; Wu, Mingyu; Guo, Fan; Shan, Lican; Zheng, Jian; Wang, Shui

    2015-04-01

    Experimental observations from space missions (including Cluster more recently) have clearly revealed the existence of high speed jets (HSJ) in the downstream region of the quasi-parallel terrestrial bow shock. Presently, two-dimensional (2-D) hybrid simulations are performed to reproduce and investigate the formation of such HSJ through a rippled quasi-parallel shock front. The simulation results show (i) that such shock fronts are strongly nonstationary (self reformation) along the shock normal, and (ii) that ripples are evidenced along the shock front as the upstream ULF waves (excited by interaction between incoming and reflected ions) are convected back to the front by the solar wind and contribute to the rippling formation. Then, these ripples are inherent structures of a quasi-parallel shock and the self reformation of the shock is not synchronous along the surface of the shock front. As a consequence, new incoming solar wind ions interact differently at different locations along the shock surface, and some can be only deflected (instead of being decelerated) at locations where ripples are large enough to play the role of local « secondary » shock. Therefore, the ion bulk velocity is also different locally after ions are transmitted dowstream, and local high-speed jets patterns are formed somewhere downstream. After a short reminder of main quasi-parallel shock features, this presentation will focus (i) on experimental observations of HSJ, (ii) on our preliminary simulation results obtained on HSJ, (iii) on their relationship with local bursty patterns of (turbulent) magnetic field evidenced at the front, and (iv) on the spatial and time scales of HSJ to be compared later on with experimental observations. Such downstream HSJ are shown to be generated by the nonstationary shock front itself and do not require any upstream perturbations (such as tangential/rotational discontinuity, HFA, etc..) to be convected by the solar wind and to interact with the shock

  10. Monte Carlo simulation of the dose response of a novel 2D silicon diode array for use in hybrid MRI–LINAC systems

    SciTech Connect

    Gargett, Maegan Rosenfeld, Anatoly; Oborn, Brad; Metcalfe, Peter

    2015-02-15

    Purpose: MRI-guided radiation therapy systems (MRIgRT) are being developed to improve online imaging during treatment delivery. At present, the operation of single point dosimeters and an ionization chamber array have been characterized in such systems. This work investigates a novel 2D diode array, named “magic plate,” for both single point calibration and 2D positional performance, the latter being a key element of modern radiotherapy techniques that will be delivered by these systems. Methods: GEANT4 Monte Carlo methods have been employed to study the dose response of a silicon diode array to 6 MV photon beams, in the presence of in-line and perpendicularly aligned uniform magnetic fields. The array consists of 121 silicon diodes (dimensions 1.5 × 1.5 × 0.38 mm{sup 3}) embedded in kapton substrate with 1 cm pitch, spanning a 10 × 10 cm{sup 2} area in total. A geometrically identical, water equivalent volume was simulated concurrently for comparison. The dose response of the silicon diode array was assessed for various photon beam field shapes and sizes, including an IMRT field, at 1 T. The dose response was further investigated at larger magnetic field strengths (1.5 and 3 T) for a 4 × 4 cm{sup 2} photon field size. Results: The magic plate diode array shows excellent correspondence (< ± 1%) to water dose in the in-line orientation, for all beam arrangements and magnetic field strengths investigated. The perpendicular orientation, however, exhibits a dose shift with respect to water at the high-dose-gradient beam edge of jaw-defined fields [maximum (4.3 ± 0.8)% over-response, maximum (1.8 ± 0.8)% under-response on opposing side for 1 T, uncertainty 1σ]. The trend is not evident in areas with in-field dose gradients typical of IMRT dose maps. Conclusions: A novel 121 pixel silicon diode array detector has been characterized by Monte Carlo simulation for its performance inside magnetic fields representative of current prototype and proposed MRI

  11. 2D design rule and layout analysis using novel large-area first-principles-based simulation flow incorporating lithographic and stress effects

    NASA Astrophysics Data System (ADS)

    Prins, Steven L.; Blatchford, James; Olubuyide, Oluwamuyiwa; Riley, Deborah; Chang, Simon; Hong, Qi-Zhong; Kim, T. S.; Borges, Ricardo; Lin, Li

    2009-03-01

    As design rules and corresponding logic standard cell layouts continue to shrink node-on-node in accordance with Moore's law, complex 2D interactions, both intra-cell and between cells, become much more prominent. For example, in lithography, lack of scaling of λ/NA implies aggressive use of resolution enhancement techniques to meet logic scaling requirements-resulting in adverse effects such as 'forbidden pitches'-and also implies an increasing range of optical influence relative to cell size. These adverse effects are therefore expected to extend well beyond the cell boundary, leading to lithographic marginalities that occur only when a given cell is placed "in context" with other neighboring cells in a variable design environment [1]. This context dependence is greatly exacerbated by increased use of strain engineering techniques such as SiGe and dual-stress liners (DSL) to enhance transistor performance, both of which also have interaction lengths on the order of microns. The use of these techniques also breaks the formerly straightforward connection between lithographic 'shapes' and end-of-line electrical performance, thus making the formulation of design rules that are robust to process variations and complex 2D interactions more difficult. To address these issues, we have developed a first-principles-based simulation flow to study contextdependent electrical effects in layout, arising not only from lithography, but also from stress and interconnect parasitic effects. This flow is novel in that it can be applied to relatively large layout clips- required for context-dependent analysis-without relying on semi-empirical or 'black-box' models for the fundamental electrical effects. The first-principles-based approach is ideal for understanding contextdependent effects early in the design phase, so that they can be mitigated through restrictive design rules. The lithographic simulations have been discussed elsewhere [1] and will not be presented in detail. The

  12. Flow analysis and validation of numerical modelling for a thin walled high pressure die casting using SPH

    NASA Astrophysics Data System (ADS)

    Cleary, Paul W.; Savage, Gary; Ha, Joseph; Prakash, Mahesh

    2014-09-01

    High pressure die casting (HPDC) is an important process for high throughput manufacturing of complex shaped metallic components. The flow involves significant fragmentation and spray formation as the high pressure liquid jets into the die from the gate system. An important class of die cast components is one with large areas of thin walls. An example of this is the chassis of the laptop computer. Computational modelling provides an opportunity to both better understand the filling process and to optimize the runner, gates, flash overs and venting systems for the die. SPH has previously been found to be very suitable for predicting HPDC for bulkier automotive components. The modelling challenges arising from the very thin sections and the many flow paths in a laptop chassis require careful validation. A water analogue experiment is used to validate the predictions of the SPH model for this representative thin walled casting. SPH predictions are used to understand and characterise the filling process. Finally, comparison of flow lines visible in an etched finished casting with the high speed flow paths in the final filled SPH model show very strong agreement. Together these demonstrate that such an SPH model is able to capture substantial detail from both the water analogue system and the actual casting process and is very suitable for simulating these types of complex thin walled castings.

  13. Icarus: A 2D direct simulation Monte Carlo (DSMC) code for parallel computers. User`s manual - V.3.0

    SciTech Connect

    Bartel, T.; Plimpton, S.; Johannes, J.; Payne, J.

    1996-10-01

    Icarus is a 2D Direct Simulation Monte Carlo (DSMC) code which has been optimized for the parallel computing environment. The code is based on the DSMC method of Bird and models from free-molecular to continuum flowfields in either cartesian (x, y) or axisymmetric (z, r) coordinates. Computational particles, representing a given number of molecules or atoms, are tracked as they have collisions with other particles or surfaces. Multiple species, internal energy modes (rotation and vibration), chemistry, and ion transport are modelled. A new trace species methodology for collisions and chemistry is used to obtain statistics for small species concentrations. Gas phase chemistry is modelled using steric factors derived from Arrhenius reaction rates. Surface chemistry is modelled with surface reaction probabilities. The electron number density is either a fixed external generated field or determined using a local charge neutrality assumption. Ion chemistry is modelled with electron impact chemistry rates and charge exchange reactions. Coulomb collision cross-sections are used instead of Variable Hard Sphere values for ion-ion interactions. The electrostatic fields can either be externally input or internally generated using a Langmuir-Tonks model. The Icarus software package includes the grid generation, parallel processor decomposition, postprocessing, and restart software. The commercial graphics package, Tecplot, is used for graphics display. The majority of the software packages are written in standard Fortran.

  14. Melt-rock reaction in the asthenospheric mantle: Perspectives from high-order accurate numerical simulations in 2D and 3D

    NASA Astrophysics Data System (ADS)

    Tirupathi, S.; Schiemenz, A. R.; Liang, Y.; Parmentier, E.; Hesthaven, J.

    2013-12-01

    The style and mode of melt migration in the mantle are important to the interpretation of basalts erupted on the surface. Both grain-scale diffuse porous flow and channelized melt migration have been proposed. To better understand the mechanisms and consequences of melt migration in a heterogeneous mantle, we have undertaken a numerical study of reactive dissolution in an upwelling and viscously deformable mantle where solubility of pyroxene increases upwards. Our setup is similar to that described in [1], except we use a larger domain size in 2D and 3D and a new numerical method. To enable efficient simulations in 3D through parallel computing, we developed a high-order accurate numerical method for the magma dynamics problem using discontinuous Galerkin methods and constructed the problem using the numerical library deal.II [2]. Linear stability analyses of the reactive dissolution problem reveal three dynamically distinct regimes [3] and the simulations reported in this study were run in the stable regime and the unstable wave regime where small perturbations in porosity grows periodically. The wave regime is more relevant to melt migration beneath the mid-ocean ridges but computationally more challenging. Extending the 2D simulations in the stable regime in [1] to 3D using various combinations of sustained perturbations in porosity at the base of the upwelling column (which may result from a viened mantle), we show the geometry and distribution of dunite channel and high-porosity melt channels are highly correlated with inflow perturbation through superposition. Strong nonlinear interactions among compaction, dissolution, and upwelling give rise to porosity waves and high-porosity melt channels in the wave regime. These compaction-dissolution waves have well organized but time-dependent structures in the lower part of the simulation domain. High-porosity melt channels nucleate along nodal lines of the porosity waves, growing downwards. The wavelength scales

  15. Advanced Tsunami Numerical Simulations and Energy Considerations by use of 3D-2D Coupled Models: The October 11, 1918, Mona Passage Tsunami

    NASA Astrophysics Data System (ADS)

    López-Venegas, Alberto M.; Horrillo, Juan; Pampell-Manis, Alyssa; Huérfano, Victor; Mercado, Aurelio

    2015-06-01

    The most recent tsunami observed along the coast of the island of Puerto Rico occurred on October 11, 1918, after a magnitude 7.2 earthquake in the Mona Passage. The earthquake was responsible for initiating a tsunami that mostly affected the northwestern coast of the island. Runup values from a post-tsunami survey indicated the waves reached up to 6 m. A controversy regarding the source of the tsunami has resulted in several numerical simulations involving either fault rupture or a submarine landslide as the most probable cause of the tsunami. Here we follow up on previous simulations of the tsunami from a submarine landslide source off the western coast of Puerto Rico as initiated by the earthquake. Improvements on our previous study include: (1) higher-resolution bathymetry; (2) a 3D-2D coupled numerical model specifically developed for the tsunami; (3) use of the non-hydrostatic numerical model NEOWAVE (non-hydrostatic evolution of ocean WAVE) featuring two-way nesting capabilities; and (4) comprehensive energy analysis to determine the time of full tsunami wave development. The three-dimensional Navier-Stokes model tsunami solution using the Navier-Stokes algorithm with multiple interfaces for two fluids (water and landslide) was used to determine the initial wave characteristic generated by the submarine landslide. Use of NEOWAVE enabled us to solve for coastal inundation, wave propagation, and detailed runup. Our results were in agreement with previous work in which a submarine landslide is favored as the most probable source of the tsunami, and improvement in the resolution of the bathymetry yielded inundation of the coastal areas that compare well with values from a post-tsunami survey. Our unique energy analysis indicates that most of the wave energy is isolated in the wave generation region, particularly at depths near the landslide, and once the initial wave propagates from the generation region its energy begins to stabilize.

  16. Metabolic flux and metabolic network analysis of Penicillium chrysogenum using 2D [13C, 1H] COSY NMR measurements and cumulative bondomer simulation.

    PubMed

    van Winden, Wouter A; van Gulik, Walter M; Schipper, Dick; Verheijen, Peter J T; Krabben, Preben; Vinke, Jacobus L; Heijnen, Joseph J

    2003-07-01

    At present two alternative methods are available for analyzing the fluxes in a metabolic network: (1) combining measurements of net conversion rates with a set of metabolite balances including the cofactor balances, or (2) leaving out the cofactor balances and fitting the resulting free fluxes to measured (13)C-labeling data. In this study these two approaches are applied to the fluxes in the glycolysis and pentose phosphate pathway of Penicillium chrysogenum growing on either ammonia or nitrate as the nitrogen source, which is expected to give different pentose phosphate pathway fluxes. The presented flux analyses are based on extensive sets of 2D [(13)C, (1)H] COSY data. A new concept is applied for simulation of this type of (13)C-labeling data: cumulative bondomer modeling. The outcomes of the (13)C-labeling based flux analysis substantially differ from those of the pure metabolite balancing approach. The fluxes that are determined using (13)C-labeling data are shown to be highly dependent on the chosen metabolic network. Extending the traditional nonoxidative pentose phosphate pathway with additional transketolase and transaldolase reactions, extending the glycolysis with a fructose 6-phosphate aldolase/dihydroxyacetone kinase reaction sequence or adding a phosphoenolpyruvate carboxykinase reaction to the model considerably improves the fit of the measured and the simulated NMR data. The results obtained using the extended version of the nonoxidative pentose phosphate pathway model show that the transketolase and transaldolase reactions need not be assumed reversible to get a good fit of the (13)C-labeling data. Strict statistical testing of the outcomes of (13)C-labeling based flux analysis using realistic measurement errors is demonstrated to be of prime importance for verifying the assumed metabolic model. PMID:12740935

  17. Turbulent fluid-structure interaction of water-entry/exit of a rotating circular cylinder using SPH method

    NASA Astrophysics Data System (ADS)

    Ghazanfarian, Jafar; Saghatchi, Roozbeh; Gorji-Bandpy, Mofid

    2015-12-01

    This paper studies the two-dimensional (2D) water-entry and exit of a rotating circular cylinder using the Sub-Particle Scale (SPS) turbulence model of a Lagrangian particle-based Smoothed-Particle Hydrodynamics (SPH) method. The full Navier-Stokes (NS) equations along with the continuity have been solved as the governing equations of the problem. The accuracy of the numerical code is verified using the case of water-entry and exit of a nonrotating circular cylinder. The numerical simulations of water-entry and exit of the rotating circular cylinder are performed at Froude numbers of 2, 5, 8, and specific gravities of 0.25, 0.5, 0.75, 1, 1.75, rotating at the dimensionless rates of 0, 0.25, 0.5, 0.75. The effect of governing parameters and vortex shedding behind the cylinder on the trajectory curves, velocity components in the flow field, and the deformation of free surface for both cases have been investigated in detail. It is seen that the rotation has a great effect on the curvature of the trajectory path and velocity components in water-entry and exit cases due to the interaction of imposed lift and drag forces with the inertia force.

  18. Stabilizing S.P.H. with conservative smoothing

    SciTech Connect

    Wen, Y.; Hicks, D.L.; Swegle, J.W.

    1994-08-01

    There is an instability in certain S.P.H. (Smoothed Particle Hydrodynamics method) material dynamics computations. Evidence from analyses and experiments suggests that the instabilities in S.P.H. are not removable with artificial viscosities. However, the analysis shows that a type of conservative smoothing does remove the instability. Also, numerical experiments, on certain test problems, show that SPHCS, and S.P.H. code with conservative smoothing, compares well in accuracy with computations based on the von Neumann-Richtmyer method.

  19. AQUAgpusph, a new free 3D SPH solver accelerated with OpenCL

    NASA Astrophysics Data System (ADS)

    Cercos-Pita, J. L.

    2015-07-01

    In this paper, AQUAgpusph, a new free Smoothed Particle Hydrodynamics (SPH) software accelerated with OpenCL, is described. The main differences and progress with respect to other existing alternatives are considered. These are the use of the Open Computing Language (OpenCL) framework instead of the Compute Unified Device Architecture (CUDA), the implementation of the most popular boundary conditions, the easy customization of the code to different problems, the extensibility with regard to Python scripts, and the runtime output which allows the tracking of simulations in real time, or a higher frequency in saving some results without a significant performance lost. These modifications are shown to improve the solver speed, the results quality, and allow for a wider areas of application. AQUAgpusph has been designed trying to provide researchers and engineers with a valuable tool to test and apply the SPH method. Three practical applications are discussed in detail. The evolution of a dam break is used to quantify and compare the computational performance and modeling accuracy with the most popular SPH Graphics Processing Unit (GPU) accelerated alternatives. The dynamics of a coupled system, a Tuned Liquid Damper (TLD), is discussed in order to show the integration capabilities of the solver with external dynamics. Finally, the sloshing flow inside a nuclear reactor is simulated in order to show the capabilities of the solver to treat 3-D problems with complex geometries and of industrial interest.

  20. A Comparison of SPH Artificial Viscosities and Their Impact on the Keplerian Disk

    NASA Astrophysics Data System (ADS)

    Hosono, Natsuki; Saitoh, Takayuki R.; Makino, Junichiro

    2016-06-01

    Hydrodynamical simulations of rotating disks play important roles in the field of astrophysical and planetary science. Smoothed particle hydrodynamics (SPH) has been widely used for such simulations. However, it has been known that when using SPH, a cold and thin Kepler disk breaks up due to the unwanted angular momentum transfer. Two possible reasons have been suggested for this breaking up of the disk; the artificial viscosity (AV) and the numerical error in the evaluation of pressure gradient in SPH. Which one is dominant is still unclear. In this paper, we investigate the reason for this rapid breaking up of the disk. We implemented most of the popular formulations of AV and switches, and measured the angular momentum transfer due to both AV and the error of SPH’s estimate of the pressure gradient. We found that the angular momentum transfer due to AV at the inner edge triggers the breaking up of the disk. We also found that the classical von Neumann–Richtmyer–Landshoff type AV with a high-order estimate for {{\

  1. Precipitation Processes Developed During ARM (1997), TOGA COARE (1992), GATE (1974), SCSMEX (1998), and KWAJEX (1999): Consistent 2D, Semi-3D and 3D Cloud Resolving Model Simulations

    NASA Technical Reports Server (NTRS)

    Tao, W-K.

    2003-01-01

    Real clouds and cloud systems are inherently three-dimensional (3D). Because of the limitations in computer resources, however, most cloud-resolving models (CRMs) today are still two-dimensional (2D). A few 3D CRMs have been used to study the response of clouds to large-scale forcing. In these 3D simulations, the model domain was small, and the integration time was 6 hours. Only recently have 3D experiments been performed for multi-day periods for tropical cloud systems with large horizontal domains at the National Center for Atmospheric Research (NACAR) and at NASA Goddard Space Flight Center . At Goddard, a 3D Goddard Cumulus Ensemble (GCE) model was used to simulate periods during TOGA COARE, SCSMEX and KWAJEX using 512 by 512 km domain (with 2 km resolution). The results indicate that surface precipitation and latent heating profiles are very similar between the 2D and 3D GCE model simulations. The reason for the strong similarity between the 2D and 3D CRM simulations is that the same observed large-scale advective tendencies of potential temperature, water vapor mixing ratio, and horizontal momentum were used as the main focusing in both the 2D and 3D models. Interestingly, the 2D and 3D versions of the CRM used at CSU showed significant differences in the rainfall and cloud statistics for three ARM cases. The major objectives of this paper are: (1) to assess the performance of the super-parameterization technique, (2) calculate and examine the surface energy (especially radiation) and water budgets, and (3) identify the differences and similarities in the organization and entrainment rates of convection between simulated 2D and 3D cloud systems.

  2. Automated 3D-2D registration of X-ray microcomputed tomography with histological sections for dental implants in bone using chamfer matching and simulated annealing.

    PubMed

    Becker, Kathrin; Stauber, Martin; Schwarz, Frank; Beißbarth, Tim

    2015-09-01

    We propose a novel 3D-2D registration approach for micro-computed tomography (μCT) and histology (HI), constructed for dental implant biopsies, that finds the position and normal vector of the oblique slice from μCT that corresponds to HI. During image pre-processing, the implants and the bone tissue are segmented using a combination of thresholding, morphological filters and component labeling. After this, chamfer matching is employed to register the implant edges and fine registration of the bone tissues is achieved using simulated annealing. The method was tested on n=10 biopsies, obtained at 20 weeks after non-submerged healing in the canine mandible. The specimens were scanned with μCT 100 and processed for hard tissue sectioning. After registration, we assessed the agreement of bone to implant contact (BIC) using automated and manual measurements. Statistical analysis was conducted to test the agreement of the BIC measurements in the registered samples. Registration was successful for all specimens and agreement of the respective binary images was high (median: 0.90, 1.-3. Qu.: 0.89-0.91). Direct comparison of BIC yielded that automated (median 0.82, 1.-3. Qu.: 0.75-0.85) and manual (median 0.61, 1.-3. Qu.: 0.52-0.67) measures from μCT were significant positively correlated with HI (median 0.65, 1.-3. Qu.: 0.59-0.72) between μCT and HI groups (manual: R(2)=0.87, automated: R(2)=0.75, p<0.001). The results show that this method yields promising results and that μCT may become a valid alternative to assess osseointegration in three dimensions. PMID:26026659

  3. Grid-Free 2D Plasma Simulations of the Complex Interaction Between the Solar Wind and Small, Near-Earth Asteroids

    NASA Technical Reports Server (NTRS)

    Zimmerman, M. I.; Farrell, W. M.; Poppe, A. R.

    2014-01-01

    We present results from a new grid-free 2D plasma simulation code applied to a small, unmagnetized body immersed in the streaming solar wind plasma. The body was purposely modeled as an irregular shape in order to examine photoemission and solar wind plasma flow in high detail on the dayside, night-side, terminator and surface-depressed 'pocket' regions. Our objective is to examine the overall morphology of the various plasma interaction regions that form around a small body like a small near-Earth asteroid (NEA). We find that the object obstructs the solar wind flow and creates a trailing wake region downstream, which involves the interplay between surface charging and ambipolar plasma expansion. Photoemission is modeled as a steady outflow of electrons from illuminated portions of the surface, and under direct illumination the surface forms a non-monotonic or ''double-sheath'' electric potential upstream of the body, which is important for understanding trajectories and equilibria of lofted dust grains in the presence of a complex asteroid geometry. The largest electric fields are found at the terminators, where ambipolar plasma expansion in the body-sized night-side wake merges seamlessly with the thin photoelectric sheath on the dayside. The pocket regions are found to be especially complex, with nearby sunlit regions of positive potential electrically connected to unlit negative potentials and forming adjacent natural electric dipoles. For objects near the surface, we find electrical dissipation times (through collection of local environmental solar wind currents) that vary over at least 5 orders of magnitude: from 39 Micro(s) inside the near-surface photoelectron cloud under direct sunlight to less than 1 s inside the particle-depleted night-side wake and shadowed pocket regions

  4. MODELING OF FRICTION STIR WELDING (FSW) PROCESS USING SMOOTH PARTICLE HYDRODYNAMICS (SPH)

    SciTech Connect

    Tartakovsky, Alexandre M.; Grant, Glenn J.; Sun, Xin; Khaleel, Mohammad A.

    2006-06-14

    We present a novel modeling approach to simulate FSW process that may have significant advantages over current traditional finite element or finite difference based methods. The proposed model is based on Smoothed Particle Hydrodynamics (SPH) method, a fully Lagrangian particle method that can simulate the dynamics of interfaces, large material deformations, void formations and material's strain and temperature history without employing complex tracking schemes. Two- and three-dimensional simulations for different tool designs are presented. Preliminary numerical results are in good qualitative agreement with experimental observations.

  5. GRADSPMHD: A parallel MHD code based on the SPH formalism

    NASA Astrophysics Data System (ADS)

    Vanaverbeke, S.; Keppens, R.; Poedts, S.

    2014-03-01

    We present GRADSPMHD, a completely Lagrangian parallel magnetohydrodynamics code based on the SPH formalism. The implementation of the equations of SPMHD in the “GRAD-h” formalism assembles known results, including the derivation of the discretized MHD equations from a variational principle, the inclusion of time-dependent artificial viscosity, resistivity and conductivity terms, as well as the inclusion of a mixed hyperbolic/parabolic correction scheme for satisfying the ∇ṡB→ constraint on the magnetic field. The code uses a tree-based formalism for neighbor finding and can optionally use the tree code for computing the self-gravity of the plasma. The structure of the code closely follows the framework of our parallel GRADSPH FORTRAN 90 code which we added previously to the CPC program library. We demonstrate the capabilities of GRADSPMHD by running 1, 2, and 3 dimensional standard benchmark tests and we find good agreement with previous work done by other researchers. The code is also applied to the problem of simulating the magnetorotational instability in 2.5D shearing box tests as well as in global simulations of magnetized accretion disks. We find good agreement with available results on this subject in the literature. Finally, we discuss the performance of the code on a parallel supercomputer with distributed memory architecture. Catalogue identifier: AERP_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AERP_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 620503 No. of bytes in distributed program, including test data, etc.: 19837671 Distribution format: tar.gz Programming language: FORTRAN 90/MPI. Computer: HPC cluster. Operating system: Unix. Has the code been vectorized or parallelized?: Yes, parallelized using MPI. RAM: ˜30 MB for a

  6. Tensile Instability and Artificial Stresses in Impact Problems in SPH

    NASA Astrophysics Data System (ADS)

    Mehra, Vishal; D, Sijoy C.; Mishra, Vinayak; Chaturvedi, Shashank

    2012-07-01

    The smooth particle hydrodynamics (SPH) is a meshless computational technique that is popular in the modeling of impact and penetration problems. However, SPH is liable to a tensile instability that manifests itself as a bunching of nodes and formation of artificial voids and no generally accepted formulation exists to counter this instability. We examine the performance of two methods that have been proposed to deal with the tensile instability— the Monaghan artificial stresses and the Godunov-type SPH. The impact and penetration of 0.5 cm radii steel spheres on 2 mm thick aluminium plate at 3.1 km/s is chosen for comparison. We show that the artificial void formation in St-Al impact is suppressed but not eliminated by using Monaghan stresses while the void formation is entirely eliminated by using Godunov-type formulation of SPH that was proposed by Parshikov and Medin.

  7. WN4 longitudinal structure in the O (5S - 3P) and O+ (2P - 2D) ionospheric emissions as simulated by the C-IAM

    NASA Astrophysics Data System (ADS)

    Martynenko, Oleg; Ward, William E.; Shepherd, Gordon; Cho, Young-Min; Namgaladze, Alexander; Fomichev, Victor; McConnell, John; Semeniuk, Kirill; Beagley, Stephen

    A newly developed Canadian Ionosphere and Atmosphere Model (C-IAM) is introduced. It is being developed on the basis of two existing first principle models: the extended Canadian Middle Atmosphere Model (CMAM) and the ionospheric part of the Upper Atmosphere Model (UAM). The model extends from the surface to the inner magnetosphere and hence, is able to describe in a self-consistent way how lower atmosphere dynamical variability propagates into and affects the upper atmosphere and ionosphere. The C-IAM was applied to model the spatial structure of two different ionospheric emissions: the nighttime 135.6 nm O ( (5) S - (3) P) and daytime 732 nm O (+) ( (2) P - (2) D) emissions. The IMAGE satellite observations showed a wave number 4 (WN4) longitudinal structure in the 135.6 nm ionospheric emission emanating from the equatorial ionization anomaly at 350-400 km near 20:00 local time at each longitude. C-IAM simulations are in a good agreement with the observations. Model result analysis reveals that the main mechanism for generating the WN4 structure in the 135.6 nm emission is a modification of the ionospheric dynamo field caused by longitudinal variation of the zonal wind due to waves penetrating from the lower atmosphere. It was also shown, that during geomagnetic storms and substorms the high-latitudinal electric field fully suppresses the dynamo, so that the emission intensity dramatically decreases and the WN4 structure does not appear. The 732 nm emission simulated with the C-IAM also reveals the WN4 structure. Similar to the 135.6 nm emission, this structure is caused by waves penetrating from the lower atmosphere. However, the mechanism of excitation is quite different. The 732 nm emission is produced by the instant local ionization and excitation, and, hence, its variation is caused by the neutral density variability in the F2 region (above 200 km) without any involvement of the electric field effects. Correspondingly, latitudinal distribution of this

  8. Precipitation Processes developed during ARM (1997), TOGA COARE (1992), GATE (1974), SCSMEX (1998), and KWAJEX (1999), Consistent 2D, semi-3D and 3D Cloud Resolving Model Simulations

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo; Hou, A.; Atlas, R.; Starr, D.; Sud, Y.

    2003-01-01

    Real clouds and cloud systems are inherently three-dimensional (3D). Because of the limitations in computer resources, however, most cloud-resolving models (CRMs) today are still two-dimensional (2D). A few 3D CRMs have been used to study the response of clouds to large-scale forcing. In these 3D simulations, the model domain was small, and the integration time was 6 hours. The major objectives of this paper are: (1) to assess the performance of the super-parameterization technique (i.e. is 2D or semi-3D CRM appropriate for the super-parameterization?); (2) calculate and examine the surface energy (especially radiation) and water budgets; (3) identify the differences and similarities in the organization and entrainment rates of convection between simulated 2D and 3D cloud systems.

  9. Direct collapse to supermassive black hole seeds: comparing the AMR and SPH approaches

    PubMed Central

    Luo, Yang; Nagamine, Kentaro; Shlosman, Isaac

    2016-01-01

    We provide detailed comparison between the adaptive mesh refinement (AMR) code enzo-2.4 and the smoothed particle hydrodynamics (SPH)/N-body code gadget-3 in the context of isolated or cosmological direct baryonic collapse within dark matter (DM) haloes to form supermassive black holes. Gas flow is examined by following evolution of basic parameters of accretion flows. Both codes show an overall agreement in the general features of the collapse; however, many subtle differences exist. For isolated models, the codes increase their spatial and mass resolutions at different pace, which leads to substantially earlier collapse in SPH than in AMR cases due to higher gravitational resolution in gadget-3. In cosmological runs, the AMR develops a slightly higher baryonic resolution than SPH during halo growth via cold accretion permeated by mergers. Still, both codes agree in the build-up of DM and baryonic structures. However, with the onset of collapse, this difference in mass and spatial resolution is amplified, so evolution of SPH models begins to lag behind. Such a delay can have effect on formation/destruction rate of H2 due to UV background, and on basic properties of host haloes. Finally, isolated non-cosmological models in spinning haloes, with spin parameter λ ∼ 0.01–0.07, show delayed collapse for greater λ, but pace of this increase is faster for AMR. Within our simulation set-up, gadget-3 requires significantly larger computational resources than enzo-2.4 during collapse, and needs similar resources, during the pre-collapse, cosmological structure formation phase. Yet it benefits from substantially higher gravitational force and hydrodynamic resolutions, except at the end of collapse. PMID:27279786

  10. Direct collapse to supermassive black hole seeds: comparing the AMR and SPH approaches

    NASA Astrophysics Data System (ADS)

    Luo, Yang; Nagamine, Kentaro; Shlosman, Isaac

    2016-07-01

    We provide detailed comparison between the adaptive mesh refinement (AMR) code ENZO-2.4 and the smoothed particle hydrodynamics (SPH)/N-body code GADGET-3 in the context of isolated or cosmological direct baryonic collapse within dark matter (DM) haloes to form supermassive black holes. Gas flow is examined by following evolution of basic parameters of accretion flows. Both codes show an overall agreement in the general features of the collapse; however, many subtle differences exist. For isolated models, the codes increase their spatial and mass resolutions at different pace, which leads to substantially earlier collapse in SPH than in AMR cases due to higher gravitational resolution in GADGET-3. In cosmological runs, the AMR develops a slightly higher baryonic resolution than SPH during halo growth via cold accretion permeated by mergers. Still, both codes agree in the build-up of DM and baryonic structures. However, with the onset of collapse, this difference in mass and spatial resolution is amplified, so evolution of SPH models begins to lag behind. Such a delay can have effect on formation/destruction rate of H2 due to UV background, and on basic properties of host haloes. Finally, isolated non-cosmological models in spinning haloes, with spin parameter λ ˜ 0.01-0.07, show delayed collapse for greater λ, but pace of this increase is faster for AMR. Within our simulation set-up, GADGET-3 requires significantly larger computational resources than ENZO-2.4 during collapse, and needs similar resources, during the pre-collapse, cosmological structure formation phase. Yet it benefits from substantially higher gravitational force and hydrodynamic resolutions, except at the end of collapse.

  11. Direct Collapse to Supermassive Black Hole Seeds: Comparing the AMR and SPH Approaches

    NASA Astrophysics Data System (ADS)

    Luo, Yang; Nagamine, Kentaro; Shlosman, Isaac

    2016-03-01

    We provide detailed comparison between the AMR code Enzo-2.4 and the SPH/N-body code GADGET-3 in the context of isolated or cosmological direct baryonic collapse within dark matter (DM) halos to form supermassive black holes. Gas flow is examined by following evolution of basic parameters of accretion flows. Both codes show an overall agreement in the general features of the collapse, however, many subtle differences exist. For isolated models, the codes increase their spatial and mass resolutions at different pace, which leads to substantially earlier collapse in SPH than in AMR cases due to higher gravitational resolution in GADGET-3. In cosmological runs, the AMR develops a slightly higher baryonic resolution than SPH during halo growth via cold accretion permeated by mergers. Still, both codes agree in the buildup of DM and baryonic structures. However, with the onset of collapse, this difference in mass and spatial resolution is amplified, so evolution of SPH models begins to lag behind. Such a delay can have effect on formation/destruction rate of H2 due to UV background, and on basic properties of host halos. Finally, isolated non-cosmological models in spinning halos, with spin parameter λ ˜ 0.01 - 0.07, show delayed collapse for greater λ, but pace of this increase is faster for AMR. Within our simulation setup, GADGET-3 requires significantly larger computational resources than Enzo-2.4 during collapse, and needs similar resources, during the pre-collapse, cosmological structure formation phase. Yet it benefits from substantially higher gravitational force and hydrodynamic resolutions, except at the end of collapse.

  12. 2-D numerical simulations of groundwater flow, heat transfer and 4He transport — implications for the He terrestrial budget and the mantle helium heat imbalance

    NASA Astrophysics Data System (ADS)

    Castro, Maria Clara; Patriarche, Delphine; Goblet, Patrick

    2005-09-01

    Because helium and heat production results from a common source, a continental 4He crustal flux of 4.65 * 10 - 14 mol m - 2 s - 1 has been estimated based on heat flow considerations. In addition, because the observed mantle He / heat flux ratio at the proximity of mid-ocean ridges (6.6 * 10 - 14 mol J - 1 ) is significantly lower than the radiogenic production ratio (1.5 * 10 - 12 mol J - 1 ), the presence of a terrestrial helium-heat imbalance was suggested. The latter could be explained by the presence of a layered mantle in which removal of He is impeded from the lower mantle [R.K. O'Nions, E.R. Oxburgh, Heat and helium in the Earth, Nature 306 (1983) 429-431; E.R. Oxburgh, R.K. O'Nions, Helium loss, tectonics, and the terrestrial heat budget, Science 237 (1987) 1583-1588]. van Keken et al. [P.E. van Keken, C.J. Ballentine, D. Porcelli, A dynamical investigation of the heat and helium imbalance, Earth Planet, Sci. Lett. 188 (2001) 421-434] have recently claimed that the helium-heat imbalance remains a robust observation. Such conclusions, however, were reached under the assumption that a steady-state regime was in place for both tracers and that their transport properties are similar at least in the upper portion of the crust. Here, through 2-D simulations of groundwater flow, heat transfer and 4He transport carried out simultaneously in the Carrizo aquifer and surrounding formations in southwest Texas, we assess the legitimacy of earlier assumptions. Specifically, we show that the driving transport mechanisms for He and heat are of a fundamentally different nature for a high range of permeabilities ( k ≤ 10 - 16 m 2) found in metamorphic and volcanic rocks at all depths in the crust. The assumption that transport properties for these two tracers are similar in the crust is thus unsound. We also show that total 4He / heat flux ratios lower than radiogenic production ratios do not reflect a He deficit in the crust or mantle original reservoir. Instead, they

  13. Aniso2D

    Energy Science and Technology Software Center (ESTSC)

    2005-07-01

    Aniso2d is a two-dimensional seismic forward modeling code. The earth is parameterized by an X-Z plane in which the seismic properties Can have monoclinic with x-z plane symmetry. The program uses a user define time-domain wavelet to produce synthetic seismograms anrwhere within the two-dimensional media.

  14. Mesh2d

    SciTech Connect

    Greg Flach, Frank Smith

    2011-12-31

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j0) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assigns an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations.

  15. Mesh2d

    Energy Science and Technology Software Center (ESTSC)

    2011-12-31

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j0) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assignsmore » an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations.« less

  16. Vertical 2D Heterostructures

    NASA Astrophysics Data System (ADS)

    Lotsch, Bettina V.

    2015-07-01

    Graphene's legacy has become an integral part of today's condensed matter science and has equipped a whole generation of scientists with an armory of concepts and techniques that open up new perspectives for the postgraphene area. In particular, the judicious combination of 2D building blocks into vertical heterostructures has recently been identified as a promising route to rationally engineer complex multilayer systems and artificial solids with intriguing properties. The present review highlights recent developments in the rapidly emerging field of 2D nanoarchitectonics from a materials chemistry perspective, with a focus on the types of heterostructures available, their assembly strategies, and their emerging properties. This overview is intended to bridge the gap between two major—yet largely disjunct—developments in 2D heterostructures, which are firmly rooted in solid-state chemistry or physics. Although the underlying types of heterostructures differ with respect to their dimensions, layer alignment, and interfacial quality, there is common ground, and future synergies between the various assembly strategies are to be expected.

  17. Analysis of the Momentum and Pollutant Transport at the Roof Level of 2D Idealized Street Canyons: a Large-Eddy Simulation Solution

    NASA Astrophysics Data System (ADS)

    Cheng, Wai Chi; Liu, Chun-Ho

    2010-05-01

    To investigate the detailed momentum and pollutant transports between urban street canyons and the shear layer, a large-eddy simulation (LES) model was developed to calculate the flow and pollutant dispersion in isothermal conditions. The computational domain consisted of three identical two-dimensional (2D) idealized street canyons of unity aspect ratio. The flow field was assumed to be periodic in the horizontal domain boundaries. The subgrid-scale (SGS) stress was calculated by solving the SGS turbulent kinetic energy (TKE) conservation. An area pollutant source with constant pollutant concentration was prescribed on the ground of all streets. Zero pollutant concentration and an open boundary were applied at the domain inflow and outflow, respectively. The quadrant and budget analyses were employed to examine the momentum and pollutant transports at the roof level of the street canyons. Quadrant analyses of the resolved-scale vertical fluxes of momentum and pollutant along the roof level were performed to compare the contributions of different events/scales to the transport processes. The roof of the street canyon is divided into five segments, namely leeward side, upwind shift, center core, downwind shift and windward side in the streamwise direction. Among the four quadrants considered, the sweeps/ejections, which correspond to the downward/upward motions, dominate the momentum/pollutant transfer. The inward/outward interactions play relatively minor roles. While studying the events in detail, the contribution from the sweeps is mainly large-scale fluctuation compared with that of ejections. Moreover, most of the momentum and pollutant transports take place on the windward side. The strong shear at the roof level initiates instability that in turn promotes the increasing turbulent transport from the leeward side to the windward side. At the same time, the roof-level fluctuations grow linearly in the streamwise direction leading to the

  18. The 2D versus 3D imaging trade-off: The impact of over- or under-estimating small throats for simulating permeability in porous media

    NASA Astrophysics Data System (ADS)

    Peters, C. A.; Crandell, L. E.; Um, W.; Jones, K. W.; Lindquist, W. B.

    2011-12-01

    Geochemical reactions in the subsurface can alter the porosity and permeability of a porous medium through mineral precipitation and dissolution. While effects on porosity are relatively well understood, changes in permeability are more difficult to estimate. In this work, pore-network modeling is used to estimate the permeability of a porous medium using pore and throat size distributions. These distributions can be determined from 2D Scanning Electron Microscopy (SEM) images of thin sections or from 3D X-ray Computed Tomography (CT) images of small cores. Each method has unique advantages as well as unique sources of error. 3D CT imaging has the advantage of reconstructing a 3D pore network without the inherent geometry-based biases of 2D images but is limited by resolutions around 1 μm. 2D SEM imaging has the advantage of higher resolution, and the ability to examine sub-grain scale variations in porosity and mineralogy, but is limited by the small size of the sample of pores that are quantified. A pore network model was created to estimate flow permeability in a sand-packed experimental column investigating reaction of sediments with caustic radioactive tank wastes in the context of the Hanford, WA site. Before, periodically during, and after reaction, 3D images of the porous medium in the column were produced using the X2B beam line facility at the National Synchrotron Light Source (NSLS) at Brookhaven National Lab. These images were interpreted using 3DMA-Rock to characterize the pore and throat size distributions. After completion of the experiment, the column was sectioned and imaged using 2D SEM in backscattered electron mode. The 2D images were interpreted using erosion-dilation to estimate the pore and throat size distributions. A bias correction was determined by comparison with the 3D image data. A special image processing method was developed to infer the pore space before reaction by digitally removing the precipitate. The different sets of pore

  19. Impact Modeling of Shoemaker Regio and Rahe Dorsum using SPH

    NASA Astrophysics Data System (ADS)

    Plesko, C. S.; Asphaug, E.

    2003-12-01

    433 Eros is the best-imaged near-Earth asteroid, but many of the surface features in these images remain enigmatic. Shoemaker Regio, an 8 km diameter boulder-littered depression on the convex side of Eros, may be a degraded impact crater, and is believed to be responsible (Thomas et al., Icarus 155, 18-37) for the ejection of blocks distributed over the surface of the asteroid. Rahe Dorsum is an 18 km long ridge, perhaps circumscribing the asteroid, that is interpreted to be a thrust fault. It is thought to have formed in one of the last major events on Eros, and may be contemporary to Shoemaker Regio (Prockter et al., Icarus 155, 75-93). Here we present current results of a modeling campaign using a smooth particle hydrodynamics code (SPH; Benz and Asphaug, Comp. Phys. Comm. 87, 253-265) to model an impact at the location of Shoemaker Regio, and the resulting boulder distribution and fracture of Eros-shaped targets with varying internal structural parameters. Initial results show that Rahe Dorsum forms in approximately the observed location as a consequence of the Shoemaker Regio impact, assuming the target was initially a monolithic rocky body. It is unrealistic, however, to assume that Eros was monolithic in recent time. The largest impact crater on Eros is believed to be Himeros, the saddle structure of the asteroid whose impact formation would have been substantially more devastating. If Shoemaker Regio formed later, then the formation of Rahe Dorsum would occur in a pre-fragmented target. Work in progress includes (a) modeling the Himeros impact event, into a target with a significantly different initial shape than present-day Eros, and (b) modeling the distribution of boulders ejected during our Shoemaker Regio simulations. The latter is useful in constraining details of the impact which crater diameter alone does not preserve.

  20. On the SPH Approximations in Modeling Water Waves

    NASA Astrophysics Data System (ADS)

    Szmidt, Kazimierz

    2014-10-01

    This paper presents an examination of approximation aspects of the Smoothed Particle Hydrodynamics (SPH) in modeling the water wave phenomenon. Close attention is paid on consistency of the SPH formulation and its relation with a correction technique applied to improve the method accuracy. The considerations are confined to flow fields within finite domains with a free surface and fixed solid boundaries with free slip boundary conditions. In spite of a wide application of the SPH method in fluid mechanics, the appropriate modeling of the boundaries is still not clear. For solid straight line boundaries, a natural way is to use additional (virtual, ghost) particles outside the boundary and take into account mirror reflection of associated field variables. Such a method leads to good results, except for a vicinity of solid horizontal bottoms where, because of the SPH approximations in the description of pressure, a stratification of the fluid material particles may occur. In order to illustrate the last phenomenon, some numerical tests have been made. These numerical experiments show that the solid fluid bottom attracts the material particles and thus, to prevent these particles from penetration into the bottom, a mutual exchange of positions of real and ghost particles has been used in a computation procedure.

  1. Towards the Identification of the Keeper Erosion Cause(s): Numerical Simulations of the Plasma and Neutral Gas Using the Global Cathode Model OrCa2D-II

    NASA Technical Reports Server (NTRS)

    Mikellides, Ioannis G.; Katz, Ira; Goebel, Dan M.; Jameson, Kristina K.

    2006-01-01

    Numerical simulations with the time-dependent Orificed Cathode (OrCa2D-II) computer code show that classical enhancements of the plasma resistivity can not account for the elevated electron temperatures and steep plasma potential gradients measured in the plume of a 25-27.5 A discharge hollow cathode. The cathode, which employs a 0.11-in diameter orifice, was operated at 5.5 sccm without an applied magnetic field using two different anode geometries. It is found that anomalous resistivity based on electron-driven instabilities improves the comparison between theory and experiment. It is also estimated that other effects such as the Hall-effect from the self-induced magnetic field, not presently included in OrCa2D-II, may contribute to the constriction of the current density streamlines thus explaining the higher plasma densities observed along the centerline.

  2. The effects of spatial location of defect states on the switching characteristics of amorphous and polycrystalline silicon thin film transistors: A numerical simulation using AMPS 2-D

    SciTech Connect

    Smith, J.; Fonash, S.; Kalkan, A.

    1994-06-01

    We demonstrate a two-dimensional device simulator for MOSFET structures that incorporates models for defect distributions and show predicted effects on device switching performance for various spatial distributions of defects in amorphous and polycrystalline silicon.

  3. Nano-indentation study on the (001) face of KDP crystal based on SPH method

    NASA Astrophysics Data System (ADS)

    Xiaoguang, Guo; Ziyuan, Liu; Hang, Gao; Dongming, Guo

    2015-08-01

    In order to avoid the defects of mesh distortion when dealing with large deformation problems through using the finite element method, a mess-free simulation method—smooth particle hydrodynamics (SPH) has been introduced. The material constitutive model of KDP crystal has been established based on the elastic-plastic theory. Then the nano-indentation on the (001) face of KDP crystal has been carried out using SPH method. Simulation results show that the maximum equivalent stress and the maximum plastic strain concentrate on the area that located near the tip of the indenter during the loading process. The distribution shape of Von Mises stress is similar to concentric circles. During the unloading process, no obvious variation of plastic strain distribution exists. The maximum Von Mises stress is mainly located at the indentation and its edge at the end of the unloading process. The approximate direct proportion relationship between the maximum indentation depth and the depth of the maximum Von Mises stress distribution has been discovered when the maximum load is lower than 8 mN. In addition, the nano-indentation experiments on KDP crystal's (001) face have been carried out. Both the material parameters and the adjusted stress-strain curve have been verified. The hindering role of the affected layer has been found and analyzed. Project supported by the National Basic Research Program of China (No. 51135002), and the Science Fund for Creative Research Groups (No. 51321004).

  4. SPH-DCDEM model for arbitrary geometries in free surface solid-fluid flows

    NASA Astrophysics Data System (ADS)

    Canelas, Ricardo B.; Crespo, Alejandro J. C.; Domínguez, Jose M.; Ferreira, Rui M. L.; Gómez-Gesteira, Moncho

    2016-05-01

    A unified discretization of rigid solids and fluids is introduced, allowing for resolved simulations of fluid-solid phases within a meshless framework. The numerical solution, attained by Smoothed Particle Hydrodynamics (SPH) and a variation of Discrete Element Method (DEM), the Distributed Contact Discrete Element Method (DCDEM) discretization, is achieved by directly considering solid-solid and solid-fluid interactions. The novelty of the work is centred on the generalization of the coupling of the DEM and SPH methodologies for resolved simulations, allowing for state-of-the-art contact mechanics theories to be used in arbitrary geometries, while fluid to solid and vice versa momentum transfers are accurately described. The methods are introduced, analysed and discussed. Initial validations on the DCDEM and the fluid coupling are presented, drawing from test cases in the literature. An experimental campaign serves as a validation point for complex, large scale solid-fluid flows, where a set of blocks in several configurations is subjected to a dam-break wave. Blocks are tracked and positions are then compared between experimental data and the numerical solutions. A Particle Image Velocimetry (PIV) technique allows for the quantification of the flow field and direct comparison with numerical data. The results show that the model is accurate and is capable of treating highly complex interactions, such as transport of debris or hydrodynamic actions on structures, if relevant scales are reproduced.

  5. SPH accuracy improvement through the combination of a quasi-Lagrangian shifting transport velocity and consistent ALE formalisms

    NASA Astrophysics Data System (ADS)

    Oger, G.; Marrone, S.; Le Touzé, D.; de Leffe, M.

    2016-05-01

    This paper addresses the accuracy of the weakly-compressible SPH method. Interpolation defects due to the presence of anisotropic particle structures inherent to the Lagrangian character of the Smoothed Particle Hydrodynamics (SPH) method are highlighted. To avoid the appearance of these structures which are detrimental to the quality of the simulations, a specific transport velocity is introduced and its inclusion within an Arbitrary Lagrangian Eulerian (ALE) formalism is described. Unlike most of existing particle disordering/shifting methods, this formalism avoids the formation of these anisotropic structures while a full consistency with the original Euler or Navier-Stokes equations is maintained. The gain in accuracy, convergence and numerical diffusion of this formalism is shown and discussed through its application to various challenging test cases.

  6. Simulating tidal and storm surge hydraulics with a simple 2D inertia based model, in the Humber Estuary, U.K

    NASA Astrophysics Data System (ADS)

    Skinner, Christopher J.; Coulthard, Thomas J.; Parsons, Daniel R.; Ramirez, Jorge A.; Mullen, Liam; Manson, Susan

    2015-03-01

    The hydraulic modelling of tidal estuarine environments has been largely limited to complex 3D models that are computationally expensive. This makes them unsuitable for applications which make use of live data to make real/near time forecasts, such as the modelling of storm surge propagation and associated flood inundation risks. To address this requirement for a computationally efficient method a reduced complexity, depth-integrated 2D storage cell model (Lisflood-FP) has been applied to the Humber Estuary, UK. The capability of Lisflood-FP to reproduce the tidal heights of the Humber Estuary has been shown by comparing modelled and observed tidal stage heights over a period of a week. The feasibility of using the Lisflood-FP model to forecast flood inundation risk from a storm surge is demonstrated by reproducing the major storm surge that struck the UK East Coast and Humber Estuary on 5 December 2013. Results show that even for this 2013 extreme event the model is capable of reproducing the hydraulics and tidal levels of the estuary. Using present day flood defences and observed flooding extents, the modelled flood inundation areas produced by the model were compared, showing agreement in most areas and illustrating the model's potential as a now-casting early warning system when driven by publically available data, and in near real-time. The Lisflood-FP model used was incorporated into the CAESAR-Lisflood GUI, with the calibration and verification of the estuarine hydraulics reported herein being a key step in creating an estuary evolution model, capable of operating in the decadal to century timescales that are presently underrepresented in estuarine predictive capability, and ultimately developing a model to predict the evolution of flood risk over the longer term.

  7. Beam Dynamics Comparisons Between Semi-Lagrangian and PIC Techniques for Simulation of the Propagation of Intense Charged Particle Beams in 2D Channels

    SciTech Connect

    Lemaire, J.-L.; Sonnendruecker, E.

    2005-06-08

    We have investigated the dynamical behaviors of intense charged particle beams propagating through continuous and periodic systems using a fully self consistent method based on the direct solution of the Vlasov equation in presence of conducting wall. The simulation code deals either with an axisymetric system (r, vr, v{theta}) or cartesian system (x, vx, y, vy). Several diagnostics have been implemented enabling to display halo generation caused by sources that are driven by nonlinear forces, mismatching, non-stationary beam distributions and its development Comparisons with corresponding PIC technique simulations can be made. Further works are in progress to study in the same manner the propagation of charged particle beams in quadrupole FODO channels.

  8. A benchmark study of 2D and 3D finite element calculations simulating dynamic pulse buckling tests of cylindrical shells under axial impact

    SciTech Connect

    Hoffman, E.L.; Ammerman, D.J.

    1993-08-01

    A series of tests investigating dynamic pulse buckling of a cylindrical shell under axial impact is compared to several finite element simulations of the event. The purpose of the study is to compare the performance of the various analysis codes and element types with respect to a problem which is applicable to radioactive material transport packages, and ultimately to develop a benchmark problem to qualify finite element analysis codes for the transport package design industry.

  9. Recovering 3D images of polymeric nanofibers in solution through theoretical analysis and Monte-Carlo simulations of their 2D TEM images.

    PubMed

    Miao, Han; Li, Jianfeng; Chen, Daoyong

    2016-05-18

    Nanofibers are well-known nanomaterials that are promising for many important applications. Since sample preparation for the applications usually starts from a nanofiber solution, characterization of the original conformation of nanofibers in the solution is significant because the conformation affects remarkably the behavior of nanofibers in the samples. However, the characterization is very difficult by existing methods: light scattering can only roughly evaluate the conformation in solution; cryo-TEM is laborious, time-consuming, and challenging technically, and thus difficult to study a system statistically. Herein we report a novel and reliable method to recover the 3D original image of nanofibers in solution through theoretical analysis and Monte-Carlo simulations of TEM images of the nanofibers. Firstly, six kinds of monodisperse nanofibers with the same composition and inner structure but different contour lengths were prepared by the method developed in our laboratory. Then, each kind of nanofiber deposited on the substrate of the TEM sample was measured by TEM and meanwhile simulated by the Monte Carlo method. By matching the simulation results with the TEM results, we determined information about the nanofibers including their rigidity and the interaction between the nanofibers and the substrate. Furthermore, for each kind of nanofiber, based on the information, 3D images of the nanofibers in solution can be re-constructed, and then the average gyration radius and hydrodynamic radius can be calculated, which were compared with the corresponding values measured experimentally to demonstrate the reliability of this method. PMID:27101798

  10. Multi-phase shock simulations with smoothed particle hydrodynamics (SPH)

    NASA Astrophysics Data System (ADS)

    Omang, M. G.; Trulsen, J. K.

    2014-09-01

    In this paper we present an approach to the implementation of a multi-phase description in the numerical Smoothed Particle Hydrodynamics method. The work is based on previous work, but has been modified to suit the applications of interest, in this case shock propagation through dusty gases. Theoretical models for multi-phase systems rely on the introduction of a number of terms describing the interaction between the different phases; drag and heat exchange are two examples. These terms contain parameters, the value of many of which must be determined empirically. We present results on the effect of changing values of some of the important parameters and compare our results to experimental and numerical results published in the literature. Our numerical results generally agree well with published results, taking uncertainties concerning accuracy in existing experimental data and details in the choice of parameters for numerical results into consideration. In particular, we find that a reduction in dust particle size is an efficient way of increasing shock retardation for a given dust loading.

  11. Approximate Riemann solvers for the Godunov SPH (GSPH)

    NASA Astrophysics Data System (ADS)

    Puri, Kunal; Ramachandran, Prabhu

    2014-08-01

    The Godunov Smoothed Particle Hydrodynamics (GSPH) method is coupled with non-iterative, approximate Riemann solvers for solutions to the compressible Euler equations. The use of approximate solvers avoids the expensive solution of the non-linear Riemann problem for every interacting particle pair, as required by GSPH. In addition, we establish an equivalence between the dissipative terms of GSPH and the signal based SPH artificial viscosity, under the restriction of a class of approximate Riemann solvers. This equivalence is used to explain the anomalous “wall heating” experienced by GSPH and we provide some suggestions to overcome it. Numerical tests in one and two dimensions are used to validate the proposed Riemann solvers. A general SPH pairing instability is observed for two-dimensional problems when using unequal mass particles. In general, Ducowicz Roe's and HLLC approximate Riemann solvers are found to be suitable replacements for the iterative Riemann solver in the original GSPH scheme.

  12. Baby universes in 2d quantum gravity

    NASA Astrophysics Data System (ADS)

    Ambjørn, Jan; Jain, Sanjay; Thorleifsson, Gudmar

    1993-06-01

    We investigate the fractal structure of 2d quantum gravity, both for pure gravity and for gravity coupled to multiple gaussian fields and for gravity coupled to Ising spins. The roughness of the surfaces is described in terms of baby universes and using numerical simulations we measure their distribution which is related to the string susceptibility exponent γstring.

  13. Physical-based non-Newtonian fluid animation using SPH

    NASA Astrophysics Data System (ADS)

    Mao, Hai

    Fluids are commonly seen in our daily lives. They exhibit a wide range of motions, which depend on their physical properties, and often result in amazing visual phenomena. Hence, fluid animation is a popular topic in computer graphics. The animation results not only enrich a computer-generated virtual world but have found applications in generating special effects in motion pictures and in computer games. The three-dimensional (3D) Navier-Stokes (NS) equation is a comprehensive mechanical description of the fluid motions. Smoothed Particle Hydrodynamics (SPH) is a popular particle-based fluid modeling formulation. In physical-based fluid animation, the fluid models are based on the 3D NS equation, which can be solved using SPH based methods. Non-Newtonian fluids form a rich class of fluids. Their physical behavior exhibits a strong and complex stress-strain relationship which falls outside the modeling range of Newtonian fluid mechanics. In physical-based fluid animation, most of the fluid models are based on Newtonian fluids, and hence they cannot realistically animate non-Newtonian fluid motions such as stretching, bending, and bouncing. Based on the 3D NS equation and SPH, three original contributions are presented in this dissertation, which address the following three aspects of fluid animation: (1) particle-based non-Newtonian fluids, (2) immiscible fluid-fluid collision, and (3) heating non-Newtonian fluids. Consequently, more varieties of non-Newtonian fluid motions can be animated, which include stretching, bending, and bouncing.

  14. Simulation of fatigue crack closure behavior under variable-amplitude loading by a 2D finite element analysis based on the most appropriate mesh size concept

    SciTech Connect

    Park, S.J.; Song, J.H.

    1999-07-01

    A two-dimensional elastic-plastic finite element analysis is performed for plane stress conditions with 4-node isoparametric elements to investigate the closure behavior under various variable-amplitude loading, i.e., single overloading, Hi-Lo block loading, and narrow- and wide-band random loading. The closure behavior under single overloading and Hi-Lo block loading can be well simulated by applying the concept of the most appropriate mesh size that will provide numerical results consistent with experimental data under constant-amplitude loading. It is found that the crack opening load under random loading may be predicted approximately by replacing the complicated random load history with the appropriate equivalent, simplified variable load history.

  15. Tsunami Simulator Integrating the Smoothed-Particle Hydrodynamics Method and the Nonlinear Shallow Water Wave Model with High Performance Computer

    NASA Astrophysics Data System (ADS)

    Suwa, T.; Imamura, F.; Sugawara, D.; Ogasawara, K.; Watanabe, M.; Hirahara, T.

    2014-12-01

    A tsunami simulator integrating a 3-D fluid simulation technology that runs on large-scale parallel computers using smoothed-particle hydrodynamics (SPH) method has been developed together with a 2-D tsunami propagation simulation technique using a nonlinear shallow water wave model. We use the 2-D simulation to calculate tsunami propagation of scale of about 1000km from epicenter to near shore. The 3-D SPH method can be used to calculate the water surface and hydraulic force that a tsunami can exert on a building, and to simulate flooding patterns at urban area of at most km scale. With our simulator we can also see three dimensional fluid feature such as complex changes a tsunami undergoes as it interacts with coastal topography or structures. As a result it is hoped that, e.g. , effect of the structures to dissipate waves energy passing over it can be elucidated. The authors utilize the simulator in the third of five fields of the Strategic Programs for Innovative Research, "Advanced Prediction Researches for Natural Disaster Prevention and Reduction," or the theme "Improvement of the tsunami forecasting system on the HPCI computer." The results of tsunami simulation using the K computer will be reported. We are going to apply it to a real problem of the disaster prevention in future.

  16. Application of the order-of-magnitude analysis to a fourth-order RANS closure for simulating a 2D boundary layer

    NASA Astrophysics Data System (ADS)

    Poroseva, Svetlana V.

    2013-11-01

    Simulations of turbulent boundary-layer flows are usually conducted using a set of the simplified Reynolds-Averaged Navier-Stokes (RANS) equations obtained by order-of-magnitude analysis (OMA) of the original RANS equations. The resultant equations for the mean-velocity components are closed using the Boussinesq approximation for the Reynolds stresses. In this study OMA is applied to the fourth-order RANS (FORANS) set of equations. The FORANS equations are chosen as they can be closed on the level of the 5th-order correlations without using unknown model coefficients, i.e. no turbulent diffusion modeling is required. New models for the 2nd-, 3rd- and 4th-order velocity-pressure gradient correlations are derived for the current FORANS equations. This set of FORANS equations and models are analyzed for the case of two-dimensional mean flow. The equations include familiar transport terms for the mean-velocity components along with algebraic expressions for velocity correlations of different orders specific to the FORANS approach. Flat plate DNS data (Spalart, 1988) are used to verify these expressions and the areas of the OMA applicability within the boundary layer. The material is based upon work supported by NASA under award NNX12AJ61A.

  17. Influence of Intrusive vs. Extrusive Magmatism on Venus' Tectonics and long-term Mantle Evolution: 2D and 3D Simulations

    NASA Astrophysics Data System (ADS)

    Tackley, P. J.

    2014-12-01

    Here we extend the numerical convection models of Venus models of [1], which included melting, magmatism, decaying heat-producing elements, core cooling, realistic temperature-dependent viscosity and either stagnant lid or episodic lithospheric overturn. In [1] it was found that for stagnant lid convection the dominant mode of heat loss is magmatic heat pipe, which requires massive magmatism and produces very thick, cold crust, inconsistent with observations. In contrast, episodic lid overturn interspersed by periods of quiescence effectively loses Venus's heat while giving lower rates of volcanism and a thinner crust. Calculations predict 5-8 overturn events over Venus's history, each lasting ˜150 Myr, initiating in one place and then spreading globally. Venus-like amplitudes of topography and geoid can be produced in either stagnant or episodic modes, with a viscosity profile that is Earth-like but shifted to higher values. Here we extend [1] by considering intrusive magmatism as an alternative to the purely extrusive magmatism previously assumed. Intrusive magmatism warms and weakens the crust, resulting in substantial surface deformation and a thinner crust. This is further enhanced by using a basaltic rheology for the crust instead of assuming the same rheological parameters as for the mantle. In some cases massive intrusive magmatism can even lead to episodic lithospheric overturn events without plastic yielding. Here we quantitatively analyse the resulting surface deformation and other signatures, and compare to observations in order to constrain the likely ratio of intrusive to extrusive magmatism. [1] Armann, M., and P. J. Tackley (2012), Simulating the thermochemical magmatic and tectonic evolution of Venus's mantle and lithosphere: Two-dimensional models, J. Geophys. Res., 117, E12003, doi:10.1029/2012JE004231.

  18. Intrusive Magmatism on Venus can lead to a weak crust and episodic overturn events: Spherical 2D and 3D Simulations

    NASA Astrophysics Data System (ADS)

    Tackley, Paul

    2015-04-01

    Here we extend the numerical convection models of Venus models of [1], which included melting, magmatism, decaying heat-producing elements, core cooling, realistic temperature-dependent viscosity and either stagnant lid or episodic lithospheric overturn. In [1] it was found that for stagnant lid convection the dominant mode of heat loss is magmatic heat pipe, which requires massive magmatism and produces very thick, cold crust, inconsistent with observations. In contrast, episodic lid overturn interspersed by periods of quiescence effectively loses Venus's heat while giving lower rates of volcanism and a thinner crust. Calculations predict 5-8 overturn events over Venus's history, each lasting ˜150 Myr, initiating in one place and then spreading globally. Venus-like amplitudes of topography and geoid can be produced in either stagnant or episodic modes, with a viscosity profile that is Earth-like but shifted to higher values. Here we extend [1] by considering intrusive magmatism as an alternative to the purely extrusive magmatism previously assumed. Intrusive magmatism warms and weakens the crust, resulting in substantial surface deformation and a thinner crust. This is further enhanced by using a basaltic rheology for the crust instead of assuming the same rheological parameters as for the mantle. In some cases massive intrusive magmatism can even lead to episodic lithospheric overturn events without plastic yielding. Here we quantitatively analyse the resulting surface deformation and other signatures, and compare to observations in order to constrain the likely ratio of intrusive to extrusive magmatism. [1] Armann, M., and P. J. Tackley (2012), Simulating the thermochemical magmatic and tectonic evolution of Venus's mantle and lithosphere: Two-dimensional models, J. Geophys. Res., 117, E12003, doi:10.1029/2012JE004231.

  19. Pitot survey of exhaust flow field of a 2-D scramjet nozzle at Mach 6 with air or freon and argon used for exhaust simulation

    NASA Technical Reports Server (NTRS)

    Monta, William J.

    1992-01-01

    A pitot-rake survey of the simulated exhaust of a half-span scramjet nozzle model was conducted in the Langley 20-Inch Mach 6 Tunnel to provide an additional data set for computational fluid dynamics (CFD) code comparisons. A wind-tunnel model was tested with a 26-tube pitot rake that could be manually positioned along the mid-semispan plane of the model. The model configuration had an external expansion surface of 20 degrees and an internal cowl expansion of 12 degrees; tests were also performed with a flow fence. Tests were conducted at a free-stream Reynolds number of approximately 6.5 x 10(exp 6) per foot and a model angle of attack of -0.75 degrees. The two exhaust gas mediums that were tested were air and a Freon 12-argon mixture. Each medium was tested at two jet total pressures at approximately 28 and 14 psia. This document presents the flow-field survey results in graphical as well as tabular form, and several observations concerning the results are discussed. The surveys reveal the major expected flow-field characteristics for each test configuration. For a 50-percent freon 12 and 50-percent argon mixture by volume (Fr-Ar), the exhaust jet pressures were slightly higher than those for air. The addition of a flow fence slightly raised the pitot pressure for the Fr-Ar mixture, but it produced little change for air. For the Fr-Ar exhaust, the plume was larger and the region between the shock wave and plume was smaller.

  20. Modelling highly deformable metal extrusion using SPH

    NASA Astrophysics Data System (ADS)

    Prakash, Mahesh; Cleary, Paul W.

    2015-05-01

    Computational modelling is often used to reduce trial extrusions through accurate defect prediction. Traditionally, metal extrusion is modelled using mesh based finite element methods. However, large plastic deformations can lead to heavy re-meshing and numerical diffusion. Here we use the mesh-less smoothed particle hydrodynamics method since it allows simulation of large deformations without re-meshing and the tracking of history dependent properties such as plastic strain making it suitable for defect prediction. The variation in plastic strain and deformation for aluminium alloy in a cylindrical 3D geometry with extrusion ratio and die angle is evaluated. The extrusion process is found to have three distinct phases consisting of an initial sharp rise in extrusion force, a steady phase requiring constant force and terminating in a sharp decline in force as metal is completely extruded. Deformation and plastic strain increased significantly with extrusion ratio but only moderately with die angle. Extrusion force increased by 150 % as the extrusion ratio increased from 2:1 to 4:1 but had only a marginal change with die angle. A low strain zone in the centre of the extruded product was found to be a function of extrusion ratio but was persistent and did not vary with die angle. Simulation of a complex 3D building industry component showed large variations in plastic strain along the length of the product at two scales. These were due to change in metal behaviour as extrusion progressed from phase 1 to phase 2. A stagnation zone at the back of the die was predicted that could lead to the "funnel" or "pipe" defect.

  1. Influence of Intrusive vs. Extrusive Magmatism on Venus' Tectonics and long-term Mantle Evolution: 2D and 3D Simulations

    NASA Astrophysics Data System (ADS)

    Tackley, Paul

    2014-05-01

    magmatism as an alternative to the purely extrusive magmatism assumed in [1]. Intrusive magmatism warms and weakens the crust, resulting in substantial surface deformation and a thinner crust. This is further enhanced by using a basaltic rheology for the crust instead of assuming the same rheological parameters as for the mantle. Here we quantitatively analyse the resulting surface deformation and other signatures, and compare to observations in order to constrain the likely ratio of intrusive to extrusive magmatism. [1] Armann, M., and P. J. Tackley (2012), Simulating the thermochemical magmatic and tectonic evo- lution of Venus's mantle and lithosphere: Two-dimensional models, J. Geophys. Res., 117, E12003, doi:10.1029/2012JE004231.

  2. WFR-2D: an analytical model for PWAS-generated 2D ultrasonic guided wave propagation

    NASA Astrophysics Data System (ADS)

    Shen, Yanfeng; Giurgiutiu, Victor

    2014-03-01

    This paper presents WaveFormRevealer 2-D (WFR-2D), an analytical predictive tool for the simulation of 2-D ultrasonic guided wave propagation and interaction with damage. The design of structural health monitoring (SHM) systems and self-aware smart structures requires the exploration of a wide range of parameters to achieve best detection and quantification of certain types of damage. Such need for parameter exploration on sensor dimension, location, guided wave characteristics (mode type, frequency, wavelength, etc.) can be best satisfied with analytical models which are fast and efficient. The analytical model was constructed based on the exact 2-D Lamb wave solution using Bessel and Hankel functions. Damage effects were inserted in the model by considering the damage as a secondary wave source with complex-valued directivity scattering coefficients containing both amplitude and phase information from wave-damage interaction. The analytical procedure was coded with MATLAB, and a predictive simulation tool called WaveFormRevealer 2-D was developed. The wave-damage interaction coefficients (WDICs) were extracted from harmonic analysis of local finite element model (FEM) with artificial non-reflective boundaries (NRB). The WFR-2D analytical simulation results were compared and verified with full scale multiphysics finite element models and experiments with scanning laser vibrometer. First, Lamb wave propagation in a pristine aluminum plate was simulated with WFR-2D, compared with finite element results, and verified by experiments. Then, an inhomogeneity was machined into the plate to represent damage. Analytical modeling was carried out, and verified by finite element simulation and experiments. This paper finishes with conclusions and suggestions for future work.

  3. Numerical Analysis of Interfacial Bonding of Al-Si Particle and Mild Steel Substrate by Cold Spray Technique Using the SPH Method

    NASA Astrophysics Data System (ADS)

    Manap, Abreeza; Ogawa, Kazuhiro; Okabe, Tomonaga

    The deposition mechanism of the cold spray (CS) technique is investigated numerically using the smoothed particle hydrodynamics (SPH) method. The CS process is simulated by modeling the impact of a spherical Al-Si powder particle on a mild steel substrate. In this work, the adhesive interaction between the contacting surfaces is described by intersurface forces using the cohesive zone model. Simulation results show that successful bonding is achieved above the critical velocity, but rebound was observed at high velocities. This indicates that optimum deposition is achieved only within a certain range of particle velocities. The simulated deformed particle shape evolution and estimated critical velocity from other sources were compared and good agreement was obtained. The analyses demonstrate the feasibility of the presented SPH methodology and the adhesive interaction model for simulating the deformation behavior of CS particles.

  4. Kinetically controlled synthesis of Au102(SPh)44 nanoclusters and catalytic application

    NASA Astrophysics Data System (ADS)

    Chen, Yongdong; Wang, Jin; Liu, Chao; Li, Zhimin; Li, Gao

    2016-05-01

    We here explore a kinetically controlled synthetic protocol for preparing solvent-solvable Au102(SPh)44 nanoclusters which are isolated from polydispersed gold nanoclusters by solvent extraction and size exclusion chromatography (SEC). The as-obtained Au102(SPh)44 nanoclusters are determined by matrix-assisted laser desorption ionization (MALDI) and electrospray ionization (ESI) mass spectrometry, in conjunction with UV-vis spectroscopy and thermogravimetric analysis (TGA). However, Au99(SPh)42, instead of Au102(SPh)44, is yielded when the polydispersed gold nanoclusters are etched in the presence of excess thiophenol under thermal conditions (e.g., 80 °C). Interestingly, the Au102(SPh)44 nanoclusters also can convert to Au99(SPh)42 with equivalent thiophenol ligands, evidenced by the analyses of UV-vis and MALDI mass spectrometry. Finally, the TiO2-supported Au102(SPh)44 nanocluster catalyst is investigated in the selective oxidation of sulfides into sulfoxides by the PhIO oxidant and gives rise to high catalytic activity (e.g., 80-99% conversion of R-S-R' sulfides with 96-99% selectivity for R-S(&z.dbd;O)-R' sulfoxides). The Au102(SPh)44/TiO2 catalyst also shows excellent recyclability in the sulfoxidation process.We here explore a kinetically controlled synthetic protocol for preparing solvent-solvable Au102(SPh)44 nanoclusters which are isolated from polydispersed gold nanoclusters by solvent extraction and size exclusion chromatography (SEC). The as-obtained Au102(SPh)44 nanoclusters are determined by matrix-assisted laser desorption ionization (MALDI) and electrospray ionization (ESI) mass spectrometry, in conjunction with UV-vis spectroscopy and thermogravimetric analysis (TGA). However, Au99(SPh)42, instead of Au102(SPh)44, is yielded when the polydispersed gold nanoclusters are etched in the presence of excess thiophenol under thermal conditions (e.g., 80 °C). Interestingly, the Au102(SPh)44 nanoclusters also can convert to Au99(SPh)42 with equivalent

  5. SphK1 promotes tumor cell migration and invasion in colorectal cancer.

    PubMed

    Long, Jianting; Xie, Ying; Yin, Junmei; Lu, Wei; Fang, Shi

    2016-05-01

    Colorectal cancer (CRC) is one of the most common cancers worldwide. Sphingosine kinase 1 (SphK1), which phosphorylates sphingosine to sphingosine-1-phosphate (S1P), is overexpressed in various types of cancers and may act as an oncogene in tumorigenesis. However, little is known about the role of SphK1 in CRC patients. We studied the expression of SphK1 in 85 cases of CRC tissues by immunohistochemistry, qRT-PCR, and western blot. We also evaluated the effect of SphK1 on cell proliferation and invasion by MTT and transwell invasion assay. SphK1 is overexpressed in CRC tissues and cell lines, and upregulation of SphK1 correlated significantly with the following parameters: lymph node metastasis, liver metastasis, and advanced TNM stage. SphK1 knockdown results in inhibition of cancer cell proliferation. Inhibition of CRC cell migration and invasion is also evident through reversal of EMT by increases in E-cadherin expression and decreases in vimentin expression. In conclusion, SphK1 is associated with the proliferation and invasiveness of CRC cells and the SphK1 gene may contribute to a novel therapeutic approach against CRC. PMID:26662312

  6. Application of a New Rheological Model to Rock Avalanches: An SPH Approach

    NASA Astrophysics Data System (ADS)

    Manzanal, D.; Drempetic, V.; Haddad, B.; Pastor, M.; Martin Stickle, M.; Mira, P.

    2016-06-01

    Rock avalanches move large volumes of material causing a highly destructive power over large areas. In these events, it is possible to monitor the evolution of slopes but failure cannot be always prevented. For this reason, modelling of the propagation phase provides engineers with fundamental information regarding speed, track, runout and depth. From these data, it is possible to perform a better risk assessment and propose mitigation measures to reduce the potential hazard of specific area. The purpose of this paper is to present a depth integrated, SPH model, which can be used to simulate real rock avalanches and to assess the influence of the rheology on the avalanche properties. The paper compares the performance of different rheological models to reproduce the track, runout and depth of the final deposit for both, scale test and real events such as Frank and Thurwiesier rock avalanches. These sets of benchmarks provide information on the proposed model accuracy and limitations.

  7. Au 133 (SPh - t Bu) 52 Nanomolecules: X-ray Crystallography, Optical, Electrochemical, and Theoretical Analysis

    SciTech Connect

    Dass, Amala; Theivendran, Shevanuja; Nimmala, Praneeth Reddy; Kumara, Chanaka; Jupally, Vijay Reddy; Fortunelli, Alessandro; Sementa, Luca; Barcaro, Giovanni; Zuo, Xiaobing; Noll, Bruce C.

    2015-04-15

    Crystal structure determination has revolutionized modern science in biology, chemistry, and physics. However, the difficulty in obtaining periodic crystal lattices which are needed for X-ray crystal analysis has hindered the determination of atomic structure in nanomaterials, known as the "nanostructure problem". Here, by using rigid and bulky ligands, we have overcome this limitation and successfully solved the X-ray crystallographic structure of the largest reported thiolated gold nanomolecule, Au133S52. The total composition, Au-133(SPh-tBu)(52), was verified using high resolution electrospray ionization mass spectrometry (ESI-MS). The experimental and simulated optical spectra show an emergent surface plasmon resonance that is more pronounced than in the slightly larger Au-144(SCH2CH2Ph)(60). Theoretical analysis indicates that the presence of rigid and bulky ligands is the key to the successful crystal formation.

  8. Integration of UAV photogrammetry and SPH modelling of fluids to study runoff on real terrains.

    PubMed

    Barreiro, Anxo; Domínguez, Jose M; C Crespo, Alejandro J; González-Jorge, Higinio; Roca, David; Gómez-Gesteira, Moncho

    2014-01-01

    Roads can experience runoff problems due to the intense rain discharge associated to severe storms. Two advanced tools are combined to analyse the interaction of complex water flows with real terrains. UAV (Unmanned Aerial Vehicle) photogrammetry is employed to obtain accurate topographic information on small areas, typically on the order of a few hectares. The Smoothed Particle Hydrodynamics (SPH) technique is applied by means of the DualSPHysics model to compute the trajectory of the water flow during extreme rain events. The use of engineering solutions to palliate flood events is also analysed. The study case simulates how the collected water can flow into a close road and how precautionary measures can be effective to drain water under extreme conditions. The amount of water arriving at the road is calculated under different protection scenarios and the efficiency of a ditch is observed to decrease when sedimentation reduces its depth. PMID:25372035

  9. Integration of UAV Photogrammetry and SPH Modelling of Fluids to Study Runoff on Real Terrains

    PubMed Central

    Barreiro, Anxo; Domínguez, Jose M.; C. Crespo, Alejandro J.; González-Jorge, Higinio; Roca, David; Gómez-Gesteira, Moncho

    2014-01-01

    Roads can experience runoff problems due to the intense rain discharge associated to severe storms. Two advanced tools are combined to analyse the interaction of complex water flows with real terrains. UAV (Unmanned Aerial Vehicle) photogrammetry is employed to obtain accurate topographic information on small areas, typically on the order of a few hectares. The Smoothed Particle Hydrodynamics (SPH) technique is applied by means of the DualSPHysics model to compute the trajectory of the water flow during extreme rain events. The use of engineering solutions to palliate flood events is also analysed. The study case simulates how the collected water can flow into a close road and how precautionary measures can be effective to drain water under extreme conditions. The amount of water arriving at the road is calculated under different protection scenarios and the efficiency of a ditch is observed to decrease when sedimentation reduces its depth. PMID:25372035

  10. Targeting SphK1 as a New Strategy against Cancer

    PubMed Central

    Shida, Dai; Takabe, Kazuaki; Kapitonov, Dmitri; Milstien, Sheldon; Spiegel, Sarah

    2009-01-01

    Sphingolipid metabolites have emerged as critical players in a number of fundamental biological processes. Among them, sphingosine-1-phosphate (S1P) promotes cell survival and proliferation, in contrast to ceramide and sphingosine, which induce cell growth arrest and apoptosis. These sphingolipids with opposing functions are interconvertible inside cells, suggesting that a finely tuned balance between them can determine cell fate. Sphingosine kinases (SphKs), which catalyze the phosphorylation of sphingosine to S1P, are critical regulators of this balance. Of the two identified SphKs, sphingosine kinase type 1 (SphK1) has been shown to regulate various processes important for cancer progression and will be the focus of this review, since much less is known of biological functions of SphK2, especially in cancer. SphK1 is overexpressed in various types of cancers and upregulation of SphK1 has been associated with tumor angiogenesis and resistance to radiation and chemotherapy. Many growth factors, through their tyrosine kinase receptors (RTKs), stimulate SphK1 leading to a rapid increase in S1P. This S1P in turn can activate S1P receptors and their downstream signaling. Conversely, activation of S1P receptors can induce transactivation of various RTKs. Thus, SphK1 may play important roles in S1P receptor RTK amplification loops. Here we review the role of SphK1 in tumorigenesis, hormonal therapy, chemotherapy resistance, and as a prognostic marker. We will also review studies on the effects of SphK inhibitors in cells in vitro and in animals in vivo and in some clinical trials and highlight the potential of SphK1 as a new target for cancer therapeutics. PMID:18691013

  11. Kinetically controlled synthesis of Au102(SPh)44 nanoclusters and catalytic application.

    PubMed

    Chen, Yongdong; Wang, Jin; Liu, Chao; Li, Zhimin; Li, Gao

    2016-05-21

    We here explore a kinetically controlled synthetic protocol for preparing solvent-solvable Au102(SPh)44 nanoclusters which are isolated from polydispersed gold nanoclusters by solvent extraction and size exclusion chromatography (SEC). The as-obtained Au102(SPh)44 nanoclusters are determined by matrix-assisted laser desorption ionization (MALDI) and electrospray ionization (ESI) mass spectrometry, in conjunction with UV-vis spectroscopy and thermogravimetric analysis (TGA). However, Au99(SPh)42, instead of Au102(SPh)44, is yielded when the polydispersed gold nanoclusters are etched in the presence of excess thiophenol under thermal conditions (e.g., 80 °C). Interestingly, the Au102(SPh)44 nanoclusters also can convert to Au99(SPh)42 with equivalent thiophenol ligands, evidenced by the analyses of UV-vis and MALDI mass spectrometry. Finally, the TiO2-supported Au102(SPh)44 nanocluster catalyst is investigated in the selective oxidation of sulfides into sulfoxides by the PhIO oxidant and gives rise to high catalytic activity (e.g., 80-99% conversion of R-S-R' sulfides with 96-99% selectivity for R-S([double bond, length as m-dash]O)-R' sulfoxides). The Au102(SPh)44/TiO2 catalyst also shows excellent recyclability in the sulfoxidation process. PMID:26758553

  12. Documentation and verification of VST2D; a model for simulating transient, Variably Saturated, coupled water-heat-solute Transport in heterogeneous, anisotropic 2-Dimensional, ground-water systems with variable fluid density

    USGS Publications Warehouse

    Friedel, Michael J.

    2001-01-01

    This report describes a model for simulating transient, Variably Saturated, coupled water-heatsolute Transport in heterogeneous, anisotropic, 2-Dimensional, ground-water systems with variable fluid density (VST2D). VST2D was developed to help understand the effects of natural and anthropogenic factors on quantity and quality of variably saturated ground-water systems. The model solves simultaneously for one or more dependent variables (pressure, temperature, and concentration) at nodes in a horizontal or vertical mesh using a quasi-linearized general minimum residual method. This approach enhances computational speed beyond the speed of a sequential approach. Heterogeneous and anisotropic conditions are implemented locally using individual element property descriptions. This implementation allows local principal directions to differ among elements and from the global solution domain coordinates. Boundary conditions can include time-varying pressure head (or moisture content), heat, and/or concentration; fluxes distributed along domain boundaries and/or at internal node points; and/or convective moisture, heat, and solute fluxes along the domain boundaries; and/or unit hydraulic gradient along domain boundaries. Other model features include temperature and concentration dependent density (liquid and vapor) and viscosity, sorption and/or decay of a solute, and capability to determine moisture content beyond residual to zero. These features are described in the documentation together with development of the governing equations, application of the finite-element formulation (using the Galerkin approach), solution procedure, mass and energy balance considerations, input requirements, and output options. The VST2D model was verified, and results included solutions for problems of water transport under isohaline and isothermal conditions, heat transport under isobaric and isohaline conditions, solute transport under isobaric and isothermal conditions, and coupled water

  13. Rock-Mechanical Constraints on SPH Applications to Asteroid Impact Evolution

    NASA Astrophysics Data System (ADS)

    Bruesch, L.; Asphaug, E.

    2002-12-01

    The smooth particle hydrodynamics (SPH) code as adapted for dynamic brittle fragmentation (Benz and Asphaug 1994, 1995) has become a leading technique for modeling meteoroid collisions into asteroids with realistic geologies and shapes (Asphaug et al., Icarus 1996; Nature 1998). Together with earlier techniques relying on the same Weibull-based Grady-Kipp fracture model (e.g. Melosh et al. 1992), it has been used to establish that asteroids larger than a few hundred meters diameter are rubble piles (Benz and Asphaug, Icarus 1999), and is applied for learning how binary asteroids form during tidal events and collisions (Michel et al., Science 2001) and how craters and regolith form on irregular, rotating bodies. But all of these applications, especially when the outcome involves a consideration of mechanical strength, rely upon the assumption that flaws are distributed according to a Weibull distribution throughout a rock mass, and that those flaws are activated dynamically and relieve local stress in a circumscribing volume. Our SPH fragmentation code has been calibrated against a variety of laboratory impact experiments, but never for a suite of experiments spanning size scale and energy scale. It would be prudent, before relying upon model predictions for km-scale rock masses, to benchmark our code against laboratory experiments, in particular the controlled set of laboratory experiments of Housen and Holsapple (Icarus 1999) designed to examine the dependence of a body's strength on its size. On our new computers we are running suites of numerical simulations to reproduce these experiments in which our only varied parameters are the laboratory impact conditions themselves: projectile and target diameter, for identical rock types (granite and basalt).

  14. Static & Dynamic Response of 2D Solids

    Energy Science and Technology Software Center (ESTSC)

    1996-07-15

    NIKE2D is an implicit finite-element code for analyzing the finite deformation, static and dynamic response of two-dimensional, axisymmetric, plane strain, and plane stress solids. The code is fully vectorized and available on several computing platforms. A number of material models are incorporated to simulate a wide range of material behavior including elasto-placicity, anisotropy, creep, thermal effects, and rate dependence. Slideline algorithms model gaps and sliding along material interfaces, including interface friction, penetration and single surfacemore » contact. Interactive-graphics and rezoning is included for analyses with large mesh distortions. In addition to quasi-Newton and arc-length procedures, adaptive algorithms can be defined to solve the implicit equations using the solution language ISLAND. Each of these capabilities and more make NIKE2D a robust analysis tool.« less

  15. Stochastic Inversion of 2D Magnetotelluric Data

    Energy Science and Technology Software Center (ESTSC)

    2010-07-01

    The algorithm is developed to invert 2D magnetotelluric (MT) data based on sharp boundary parametrization using a Bayesian framework. Within the algorithm, we consider the locations and the resistivity of regions formed by the interfaces are as unknowns. We use a parallel, adaptive finite-element algorithm to forward simulate frequency-domain MT responses of 2D conductivity structure. Those unknown parameters are spatially correlated and are described by a geostatistical model. The joint posterior probability distribution function ismore » explored by Markov Chain Monte Carlo (MCMC) sampling methods. The developed stochastic model is effective for estimating the interface locations and resistivity. Most importantly, it provides details uncertainty information on each unknown parameter. Hardware requirements: PC, Supercomputer, Multi-platform, Workstation; Software requirements C and Fortan; Operation Systems/version is Linux/Unix or Windows« less

  16. Stochastic Inversion of 2D Magnetotelluric Data

    SciTech Connect

    Chen, Jinsong

    2010-07-01

    The algorithm is developed to invert 2D magnetotelluric (MT) data based on sharp boundary parametrization using a Bayesian framework. Within the algorithm, we consider the locations and the resistivity of regions formed by the interfaces are as unknowns. We use a parallel, adaptive finite-element algorithm to forward simulate frequency-domain MT responses of 2D conductivity structure. Those unknown parameters are spatially correlated and are described by a geostatistical model. The joint posterior probability distribution function is explored by Markov Chain Monte Carlo (MCMC) sampling methods. The developed stochastic model is effective for estimating the interface locations and resistivity. Most importantly, it provides details uncertainty information on each unknown parameter. Hardware requirements: PC, Supercomputer, Multi-platform, Workstation; Software requirements C and Fortan; Operation Systems/version is Linux/Unix or Windows

  17. Stacking up 2D materials

    NASA Astrophysics Data System (ADS)

    Mayor, Louise

    2016-05-01

    Graphene might be the most famous example, but there are other 2D materials and compounds too. Louise Mayor explains how these atomically thin sheets can be layered together to create flexible “van der Waals heterostructures”, which could lead to a range of novel applications.

  18. MOSS2D V1

    Energy Science and Technology Software Center (ESTSC)

    2001-01-31

    This software reduces the data from two-dimensional kSA MOS program, k-Space Associates, Ann Arbor, MI. Initial MOS data is recorded without headers in 38 columns, with one row of data per acquisition per lase beam tracked. The final MOSS 2d data file is reduced, graphed, and saved in a tab-delimited column format with headers that can be plotted in any graphing software.

  19. A new inversion method for (T2, D) 2D NMR logging and fluid typing

    NASA Astrophysics Data System (ADS)

    Tan, Maojin; Zou, Youlong; Zhou, Cancan

    2013-02-01

    One-dimensional nuclear magnetic resonance (1D NMR) logging technology has some significant limitations in fluid typing. However, not only can two-dimensional nuclear magnetic resonance (2D NMR) provide some accurate porosity parameters, but it can also identify fluids more accurately than 1D NMR. In this paper, based on the relaxation mechanism of (T2, D) 2D NMR in a gradient magnetic field, a hybrid inversion method that combines least-squares-based QR decomposition (LSQR) and truncated singular value decomposition (TSVD) is examined in the 2D NMR inversion of various fluid models. The forward modeling and inversion tests are performed in detail with different acquisition parameters, such as magnetic field gradients (G) and echo spacing (TE) groups. The simulated results are discussed and described in detail, the influence of the above-mentioned observation parameters on the inversion accuracy is investigated and analyzed, and the observation parameters in multi-TE activation are optimized. Furthermore, the hybrid inversion can be applied to quantitatively determine the fluid saturation. To study the effects of noise level on the hybrid method and inversion results, the numerical simulation experiments are performed using different signal-to-noise-ratios (SNRs), and the effect of different SNRs on fluid typing using three fluid models are discussed and analyzed in detail.

  20. MAGNUM-2D computer code: user's guide

    SciTech Connect

    England, R.L.; Kline, N.W.; Ekblad, K.J.; Baca, R.G.

    1985-01-01

    Information relevant to the general use of the MAGNUM-2D computer code is presented. This computer code was developed for the purpose of modeling (i.e., simulating) the thermal and hydraulic conditions in the vicinity of a waste package emplaced in a deep geologic repository. The MAGNUM-2D computer computes (1) the temperature field surrounding the waste package as a function of the heat generation rate of the nuclear waste and thermal properties of the basalt and (2) the hydraulic head distribution and associated groundwater flow fields as a function of the temperature gradients and hydraulic properties of the basalt. MAGNUM-2D is a two-dimensional numerical model for transient or steady-state analysis of coupled heat transfer and groundwater flow in a fractured porous medium. The governing equations consist of a set of coupled, quasi-linear partial differential equations that are solved using a Galerkin finite-element technique. A Newton-Raphson algorithm is embedded in the Galerkin functional to formulate the problem in terms of the incremental changes in the dependent variables. Both triangular and quadrilateral finite elements are used to represent the continuum portions of the spatial domain. Line elements may be used to represent discrete conduits. 18 refs., 4 figs., 1 tab.

  1. Periodically sheared 2D Yukawa systems

    SciTech Connect

    Kovács, Anikó Zsuzsa; Hartmann, Peter; Donkó, Zoltán

    2015-10-15

    We present non-equilibrium molecular dynamics simulation studies on the dynamic (complex) shear viscosity of a 2D Yukawa system. We have identified a non-monotonic frequency dependence of the viscosity at high frequencies and shear rates, an energy absorption maximum (local resonance) at the Einstein frequency of the system at medium shear rates, an enhanced collective wave activity, when the excitation is near the plateau frequency of the longitudinal wave dispersion, and the emergence of significant configurational anisotropy at small frequencies and high shear rates.

  2. Nanoimprint lithography: 2D or not 2D? A review

    NASA Astrophysics Data System (ADS)

    Schift, Helmut

    2015-11-01

    Nanoimprint lithography (NIL) is more than a planar high-end technology for the patterning of wafer-like substrates. It is essentially a 3D process, because it replicates various stamp topographies by 3D displacement of material and takes advantage of the bending of stamps while the mold cavities are filled. But at the same time, it keeps all assets of a 2D technique being able to pattern thin masking layers like in photon- and electron-based traditional lithography. This review reports about 20 years of development of replication techniques at Paul Scherrer Institut, with a focus on 3D aspects of molding, which enable NIL to stay 2D, but at the same time enable 3D applications which are "more than Moore." As an example, the manufacturing of a demonstrator for backlighting applications based on thermally activated selective topography equilibration will be presented. This technique allows generating almost arbitrary sloped, convex and concave profiles in the same polymer film with dimensions in micro- and nanometer scale.

  3. Role of sph2 Gene Regulation in Hemolytic and Sphingomyelinase Activities Produced by Leptospira interrogans

    PubMed Central

    Narayanavari, Suneel A.; Lourdault, Kristel; Sritharan, Manjula; Haake, David A.; Matsunaga, James

    2015-01-01

    Pathogenic members of the genus Leptospira are the causative agents of leptospirosis, a neglected disease of public and veterinary health concern. Leptospirosis is a systemic disease that in its severest forms leads to renal insufficiency, hepatic dysfunction, and pulmonary failure. Many strains of Leptospira produce hemolytic and sphingomyelinase activities, and a number of candidate leptospiral hemolysins have been identified based on sequence similarity to well-characterized bacterial hemolysins. Five of the putative hemolysins are sphingomyelinase paralogs. Although recombinant forms of the sphingomyelinase Sph2 and other hemolysins lyse erythrocytes, none have been demonstrated to contribute to the hemolytic activity secreted by leptospiral cells. In this study, we examined the regulation of sph2 and its relationship to hemolytic and sphingomyelinase activities produced by several L. interrogans strains cultivated under the osmotic conditions found in the mammalian host. The sph2 gene was poorly expressed when the Fiocruz L1-130 (serovar Copenhageni), 56601 (sv. Lai), and L495 (sv. Manilae) strains were cultivated in the standard culture medium EMJH. Raising EMJH osmolarity to physiological levels with sodium chloride enhanced Sph2 production in all three strains. In addition, the Pomona subtype kennewicki strain LC82-25 produced substantially greater amounts of Sph2 during standard EMJH growth than the other strains, and sph2 expression increased further by addition of salt. When 10% rat serum was present in EMJH along with the sodium chloride supplement, Sph2 production increased further in all strains. Osmotic regulation and differences in basal Sph2 production in the Manilae L495 and Pomona strains correlated with the levels of secreted hemolysin and sphingomyelinase activities. Finally, a transposon insertion in sph2 dramatically reduced hemolytic and sphingomyelinase activities during incubation of L. interrogans at physiologic osmolarity

  4. Trimming Down the Willman 1 dSph

    NASA Astrophysics Data System (ADS)

    Siegel, Michael H.; Shetrone, Matthew D.; Irwin, Michael

    2008-06-01

    Willman 1 is a small low-surface-brightness object identified in the Sloan Digital Sky Survey and tentatively classified as a very low luminosity dSph galaxy. Further study has supported this classification while hinting that it may be undergoing disruption by the Milky Way potential. In an effort to better constrain the nature of Willman 1, we present a comprehensive analysis of the brightest stars in a 0.6 deg2 field centered on the overdensity. High-resolution Hobby-Eberly Terlescope (HET) spectra of two previously identified Willman 1 red giant branch (RGB) stars show that one is a metal-rich foreground dwarf while the other is a metal-poor giant. The one RGB star that we confirm as a member of Willman 1 has a low metallicity ([Fe/H] = -2.2) and a surprisingly low α-element abundance ([α/Fe] = -0.11). Washington+DDO51 photometry indicates that 2-5 of the seven brightest Willman 1 stars identified in previous studies are actually dwarf stars, including some of the more metal-rich stars that have been used to argue both for an abundance spread and a more metal-rich stellar population than galaxies of similar luminosity. The remaining stars are too blue or too faint for photometric classification. The Washington+DDO51 photometry identifies three potential RGB stars in the field but HET spectra show that they are background halo stars. Time series photometry identifies one apparent variable star in the field, but it is unlikely to be associated with Willman 1. Our wide-field survey indicates that over 0.6 deg2, Willman 1 does not have a single RR Lyrae star, a single blue horizontal branch (BHB) star, or a single RGB star beyond its tidal radius. While our results confirm that Willman 1 is most likely a low-luminosity metal-poor dSph galaxy, the possibility remains that it is a tidally disrupted metal-poor globular cluster. Based on observations obtained with the Hobby-Eberly Telescope, which is a joint project of the University of Texas at Austin, the

  5. A First Approach to Hydrodynamics in General Relativistic Systems Using SPH

    NASA Astrophysics Data System (ADS)

    Cruz-Pérez, J. P.; González, J. A.; Montoya, E.

    2010-07-01

    In this work we present the Lagrangian formulation of the general relativistic ideal fluid equations. With the help of the standard Smoothed Particle Hydrodynamics (SPH) method we obtain a discretization of the motion equations. Having in mind that several of the most interesting astrophysical systems that we observe in the universe have been shaped by fluid dynamical processes, we want to use this method to study them. We present the first steps to implement such general relativistic SPH codes.

  6. Unitary quantum lattice gas representation of 2D quantum turbulence

    NASA Astrophysics Data System (ADS)

    Zhang, Bo; Vahala, George; Vahala, Linda; Soe, Min

    2011-05-01

    Quantum vortex structures and energy cascades are examined for two dimensional quantum turbulence (2D QT) using a special unitary evolution algorithm. The qubit lattice gas (QLG) algorithm, is employed to simulate the weakly-coupled Bose-Einstein condensate (BEC) governed by the Gross-Pitaevskii (GP) equation. A parameter regime is uncovered in which, as in 3D QT, there is a very short Poincare recurrence time. This short recurrence time is destroyed as the nonlinear interaction energy is increased. Energy cascades for 2D QT are considered to examine whether 2D QT exhibits the inverse cascades of 2D classical turbulence. In the parameter regime considered, the spectra analysis reveals no such dual cascades---dual cascades being a hallmark of 2D classical turbulence.

  7. Dwarf Cepheids in the Sagittarius dSph Galaxy

    NASA Astrophysics Data System (ADS)

    Vivas, Kathy; Mateo, Mario; Nidever, David

    2013-08-01

    Pulsating stars below the horizontal branch (aka, dwarf cepheids) provide an interesting tool to study the stellar populations and structure of dSph galaxies. They obey a period-luminosity relationship and allow determination of distances with precisions as good as RR Lyrae stars (5-7%). They also trace a range of stellar populations since stars coming from different evolutionary paths may coexist in the region of the instability strip. We propose to use the large field of view of DECam to survey for the first time the Sagittarius galaxy for dwarf cepheids. We expect to discover several hundreds of dwarf cepheids which would allow us to investigate trends along the core region with good statistics. We will use the dwarf cepheids to study the stellar population(s) that produce them as well as any population gradient, if it exists, along the galaxy core. In addition, the large number of stars will allow us to study the 3D structure of the Sgr core which is an important constraint in any model of the disruption of Sgr. RR Lyrae and anomalous cepheids will naturally appear as well in the data, adding additional constraints in our study.

  8. 2D constant-loss taper for mode conversion

    NASA Astrophysics Data System (ADS)

    Horth, Alexandre; Kashyap, Raman; Quitoriano, Nathaniel J.

    2015-03-01

    Proposed in this manuscript is a novel taper geometry, the constant-loss taper (CLT). This geometry is derived with 1D slabs of silicon embedded in silicon dioxide using coupled-mode theory (CMT). The efficiency of the CLT is compared to both linear and parabolic tapers using CMT and 2D finite-difference time-domain simulations. It is shown that over a short 2D, 4.45 μm long taper the CLT's mode conversion efficiency is ~90% which is 10% and 18% more efficient than a 2D parabolic or linear taper, respectively.

  9. The mass distribution of the Fornax dSph: constraints from its globular cluster distribution

    NASA Astrophysics Data System (ADS)

    Cole, David R.; Dehnen, Walter; Read, Justin I.; Wilkinson, Mark I.

    2012-10-01

    Uniquely among the dwarf spheroidal (dSph) satellite galaxies of the Milky Way, Fornax hosts globular clusters. It remains a puzzle as to why dynamical friction has not yet dragged any of Fornax's five globular clusters to the centre, and also why there is no evidence that any similar star cluster has been in the past (for Fornax or any other tidally undisrupted dSph). We set up a suite of 2800 N-body simulations that sample the full range of globular cluster orbits and mass models consistent with all existing observational constraints for Fornax. In agreement with previous work, we find that if Fornax has a large dark matter core, then its globular clusters remain close to their currently observed locations for long times. Furthermore, we find previously unreported behaviour for clusters that start inside the core region. These are pushed out of the core and gain orbital energy, a process we call 'dynamical buoyancy'. Thus, a cored mass distribution in Fornax will naturally lead to a shell-like globular cluster distribution near the core radius, independent of the initial conditions. By contrast, cold dark matter-type cusped mass distributions lead to the rapid infall of at least one cluster within Δt = 1-2 Gyr, except when picking unlikely initial conditions for the cluster orbits (˜2 per cent probability), and almost all clusters within Δt = 10 Gyr. Alternatively, if Fornax has only a weakly cusped mass distribution, then dynamical friction is much reduced. While over Δt = 10 Gyr this still leads to the infall of one to four clusters from their present orbits, the infall of any cluster within Δt = 1-2 Gyr is much less likely (with probability 0-70 per cent, depending on Δt and the strength of the cusp). Such a solution to the timing problem requires (in addition to a shallow dark matter cusp) that in the past the globular clusters were somewhat further from Fornax than today; they most likely did not form within Fornax, but were accreted.

  10. PDGF induces SphK1 expression via Egr-1 to promote pulmonary artery smooth muscle cell proliferation.

    PubMed

    Sysol, Justin R; Natarajan, Viswanathan; Machado, Roberto F

    2016-06-01

    Pulmonary arterial hypertension (PAH) is a progressive, life-threatening disease for which there is currently no curative treatment available. Pathologic changes in this disease involve remodeling of the pulmonary vasculature, including marked proliferation of pulmonary artery smooth muscle cells (PASMCs). Recently, the bioactive lipid sphingosine-1-phosphate (S1P) and its activating kinase, sphingosine kinase 1 (SphK1), have been shown to be upregulated in PAH and promote PASMC proliferation. The mechanisms regulating the transcriptional upregulation of SphK1 in PASMCs are unknown. In this study, we investigated the role of platelet-derived growth factor (PDGF), a PAH-relevant stimuli associated with enhanced PASMC proliferation, on SphK1 expression regulation. In human PASMCs (hPASMCs), PDGF significantly increased SphK1 mRNA and protein expression and induced cell proliferation. Selective inhibition of SphK1 attenuated PDGF-induced hPASMC proliferation. In silico promoter analysis for SphK1 identified several binding sites for early growth response protein 1 (Egr-1), a PDGF-associated transcription factor. Luciferase assays demonstrated that PDGF activates the SphK1 promoter in hPASMCs, and truncation of the 5'-promoter reduced PDGF-induced SphK1 expression. Stimulation of hPASMCs with PDGF induced Egr-1 protein expression, and direct binding of Egr-1 to the SphK1 promoter was confirmed by chromatin immunoprecipitation analysis. Inhibition of ERK signaling prevented induction of Egr-1 by PDGF. Silencing of Egr-1 attenuated PDGF-induced SphK1 expression and hPASMC proliferation. These studies demonstrate that SphK1 is regulated by PDGF in hPASMCs via the transcription factor Egr-1, promoting cell proliferation. This novel mechanism of SphK1 regulation may be a therapeutic target in pulmonary vascular remodeling in PAH. PMID:27099350

  11. SPH modeling of adhesion in fast dynamics: Application to the Cold Spray process

    NASA Astrophysics Data System (ADS)

    Profizi, Paul; Combescure, Alain; Ogawa, Kahuziro

    2016-04-01

    The objective of this paper is to show, in a specific case, the importance of modeling adhesive forces when simulating the bouncing of very small particles impacting a substrate at high speed. The implementation of this model into a fast-dynamics SPH code is described. Taking the example of an impacted elastic cylinder, we show that the adhesive forces, which are surface forces, play a significant role only if the particles are sufficiently small. The effect of the choice of the type of interaction law in the cohesive zone is studied and some conclusions on the relevance of the modeling of the adhesive forces for fast-dynamics impacts are drawn. Then, the adhesion model is used to simulate the Cold Spray process. An aluminum particle is projected against a substrate made of the same material at a velocity ranging from 200 to 1000 m ṡs-1. We study the effects of the various modeling assumptions on the final result: bouncing or sticking. Increasingly complex models are considered. At a 200 m ṡs-1 impact velocity, elastic behavior is assumed, the substrate being simply supported at its base and supplied with absorbing boundaries. The same absorbing boundaries are also used for all the other simulations. Then, plasticity is introduced and the impact velocity is increased up to 1000 m ṡs-1. At the highest velocities, the resulting strains are very significant. The calculations show that if the adhesion model is appropriately chosen, it is possible to reproduce the experimental observations: the particles stick to the substrate in a range of impact velocities surrounded by two velocity ranges in which the particles bounce.

  12. 2D Radiative Processes Near Cloud Edges

    NASA Technical Reports Server (NTRS)

    Varnai, T.

    2012-01-01

    Because of the importance and complexity of dynamical, microphysical, and radiative processes taking place near cloud edges, the transition zone between clouds and cloud free air has been the subject of intense research both in the ASR program and in the wider community. One challenge in this research is that the one-dimensional (1D) radiative models widely used in both remote sensing and dynamical simulations become less accurate near cloud edges: The large horizontal gradients in particle concentrations imply that accurate radiative calculations need to consider multi-dimensional radiative interactions among areas that have widely different optical properties. This study examines the way the importance of multidimensional shortwave radiative interactions changes as we approach cloud edges. For this, the study relies on radiative simulations performed for a multiyear dataset of clouds observed over the NSA, SGP, and TWP sites. This dataset is based on Microbase cloud profiles as well as wind measurements and ARM cloud classification products. The study analyzes the way the difference between 1D and 2D simulation results increases near cloud edges. It considers both monochromatic radiances and broadband radiative heating, and it also examines the influence of factors such as cloud type and height, and solar elevation. The results provide insights into the workings of radiative processes and may help better interpret radiance measurements and better estimate the radiative impacts of this critical region.

  13. Pathological roles of the VEGF/SphK pathway in Niemann–Pick type C neurons

    PubMed Central

    Lee, Hyun; Lee, Jong Kil; Park, Min Hee; Hong, Yu Ri; Marti, Hugo H.; Kim, Hyongbum; Okada, Yohei; Otsu, Makoto; Seo, Eul-Ju; Park, Jae-Hyung; Bae, Jae-Hoon; Okino, Nozomu; He, Xingxuan; Schuchman, Edward H.; Bae, Jae-sung; Jin, Hee Kyung

    2014-01-01

    Sphingosine is a major storage compound in Niemann–Pick type C disease (NP–C), although the pathological role(s) of this accumulation have not been fully characterized. Here we found that sphingosine kinase (SphK) activity is reduced in NP–C patient fibroblasts and NP–C mouse Purkinje neurons (PNs) due to defective vascular endothelial growth factor (VEGF) levels. Sphingosine accumulation due to inactivation of VEGF/SphK pathway led to PNs loss via inhibition of autophagosome–lysosome fusion in NP–C mice. VEGF activates SphK by binding to VEGFR2, resulting in decreased sphingosine storage as well as improved PNs survival and clinical outcomes in NP–C cells and mice. We also show that induced pluripotent stem cell (iPSC)-derived human NP–C neurons are generated and the abnormalities caused by VEGF/SphK inactivity in these cells are corrected by replenishment of VEGF. Overall, these results reveal a pathogenic mechanism in NP–C neurons where defective SphK activity is due to impaired VEGF levels. PMID:25417698

  14. Pathological roles of the VEGF/SphK pathway in Niemann-Pick type C neurons.

    PubMed

    Lee, Hyun; Lee, Jong Kil; Park, Min Hee; Hong, Yu Ri; Marti, Hugo H; Kim, Hyongbum; Okada, Yohei; Otsu, Makoto; Seo, Eul-Ju; Park, Jae-Hyung; Bae, Jae-Hoon; Okino, Nozomu; He, Xingxuan; Schuchman, Edward H; Bae, Jae-Sung; Jin, Hee Kyung

    2014-01-01

    Sphingosine is a major storage compound in Niemann-Pick type C disease (NP-C), although the pathological role(s) of this accumulation have not been fully characterized. Here we found that sphingosine kinase (SphK) activity is reduced in NP-C patient fibroblasts and NP-C mouse Purkinje neurons (PNs) due to defective vascular endothelial growth factor (VEGF) levels. Sphingosine accumulation due to inactivation of VEGF/SphK pathway led to PNs loss via inhibition of autophagosome-lysosome fusion in NP-C mice. VEGF activates SphK by binding to VEGFR2, resulting in decreased sphingosine storage as well as improved PNs survival and clinical outcomes in NP-C cells and mice. We also show that induced pluripotent stem cell (iPSC)-derived human NP-C neurons are generated and the abnormalities caused by VEGF/SphK inactivity in these cells are corrected by replenishment of VEGF. Overall, these results reveal a pathogenic mechanism in NP-C neurons where defective SphK activity is due to impaired VEGF levels. PMID:25417698

  15. Collective excitations in 2D hard-disc fluid.

    PubMed

    Huerta, Adrian; Bryk, Taras; Trokhymchuk, Andrij

    2015-07-01

    Collective dynamics of a two-dimensional (2D) hard-disc fluid was studied by molecular dynamics simulations in the range of packing fractions that covers states up to the freezing. Some striking features concerning collective excitations in this system were observed. In particular, the short-wavelength shear waves while being absent at low packing fractions were observed in the range of high packing fractions, just before the freezing transition in a 2D hard-disc fluid. In contrast, the so-called "positive sound dispersion" typically observed in dense Lennard-Jones-like fluids, was not detected for the 2D hard-disc fluid. The ratio of specific heats in the 2D hard-disc fluid shows a monotonic increase with density approaching the freezing, resembling in this way the similar behavior in the vicinity of the Widom line in the case of supercritical fluids. PMID:25595625

  16. JOSEPHINE: A parallel SPH code for free-surface flows

    NASA Astrophysics Data System (ADS)

    Cherfils, J. M.; Pinon, G.; Rivoalen, E.

    2012-07-01

    JOSEPHINE is a parallel Smoothed Particle Hydrodynamics program, designed to solve unsteady free-surface flows. The adopted numerical scheme is efficient and has been validated on a first case, where a liquid drop is stretched over the time. Boundary conditions can also be modelled, as it is demonstrated in a second case: the collapse of a water column. Results show good agreement with both reference numerical solutions and experiments. The use of parallelism allows significant reduction of the computational time, even more with large number of particles. JOSEPHINE has been written so that any untrained developers can handle it easily and implement new features. Catalogue identifier: AELV_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AELV_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 5139 No. of bytes in distributed program, including test data, etc.: 22 833 Distribution format: tar.gz Programming language: Fortran 90 and OpenMPI Computer: All shared or distributed memory parallel processors, tested on a Xeon W3520, 2.67 GHz. Operating system: Any system with a Fortran 90 compiler and MPI, tested on Debian Linux. Has the code been vectorised or parallelised?: The code has been parallelised but has not been explicitly vectorised. RAM: Dependent upon the number of particles. Classification: 4.12 Nature of problem:JOSEPHINE is designed to solve unsteady incompressible flows with a free-surface and large deformations. Solution method:JOSEPHINE is an implementation of Smoothed Particle Hydrodynamics. SPH is a Lagrangian mesh free particle method, thus, no explicit tracking procedure is required to catch the free surface. Incompressibility is satisfied using a weakly compressible model. Boundary conditions at walls are enforced by means of the ghost particles

  17. Ursa Minor dSph galaxy: Updated census of RR Lyrae stars

    NASA Astrophysics Data System (ADS)

    Kinemuchi, K.; Grabowski, K.; Kuehn, C.; Nemec, J.

    2016-05-01

    We present our observations and photometric results of the Ursa Minor dwarf spheroidal galaxy (UMi dSph). Observations were taken at the Apache Point Observatory 0.5m ARCSAT telescope in 2014. We identify previously known RR Lyrae stars in the field of view, and also catalog other variable star candidates for which tentative classifications are provided. We have performed a period search for the known and new variable stars. Our ultimate goal is to create an updated catalog of variable stars in the UMi dSph and to compare the RR Lyrae stellar characteristics to other RR Lyrae stars found in Local Group dSph galaxies. The comparisons can give us insights to the near-field cosmology of the Local Group.

  18. NKG2D ligands as therapeutic targets

    PubMed Central

    Spear, Paul; Wu, Ming-Ru; Sentman, Marie-Louise; Sentman, Charles L.

    2013-01-01

    The Natural Killer Group 2D (NKG2D) receptor plays an important role in protecting the host from infections and cancer. By recognizing ligands induced on infected or tumor cells, NKG2D modulates lymphocyte activation and promotes immunity to eliminate ligand-expressing cells. Because these ligands are not widely expressed on healthy adult tissue, NKG2D ligands may present a useful target for immunotherapeutic approaches in cancer. Novel therapies targeting NKG2D ligands for the treatment of cancer have shown preclinical success and are poised to enter into clinical trials. In this review, the NKG2D receptor and its ligands are discussed in the context of cancer, infection, and autoimmunity. In addition, therapies targeting NKG2D ligands in cancer are also reviewed. PMID:23833565

  19. Local Group dSph radio survey with ATCA (III): constraints on particle dark matter

    SciTech Connect

    Regis, Marco; Colafrancesco, Sergio; Profumo, Stefano; De Blok, W.J.G.; Massardi, Marcella; Richter, Laura E-mail: sergio.colafrancesco@wits.ac.za E-mail: blok@astron.nl E-mail: laura@ska.ac.za

    2014-10-01

    We performed a deep search for radio synchrotron emissions induced by weakly interacting massive particles (WIMPs) annihilation or decay in six dwarf spheroidal (dSph) galaxies of the Local Group. Observations were conducted with the Australia Telescope Compact Array (ATCA) at 16 cm wavelength, with an rms sensitivity better than 0.05 mJy/beam in each field. In this work, we first discuss the uncertainties associated with the modeling of the expected signal, such as the shape of the dark matter (DM) profile and the dSph magnetic properties. We then investigate the possibility that point-sources detected in the proximity of the dSph optical center might be due to the emission from a DM cuspy profile. No evidence for an extended emission over a size of few arcmin (which is the DM halo size) has been detected. We present the associated bounds on the WIMP parameter space for different annihilation/decay final states and for different astrophysical assumptions. If the confinement of electrons and positrons in the dSph is such that the majority of their power is radiated within the dSph region, we obtain constraints on the WIMP annihilation rate which are well below the thermal value for masses up to few TeV. On the other hand, for conservative assumptions on the dSph magnetic properties, the bounds can be dramatically relaxed. We show however that, within the next 10 years and regardless of the astrophysical assumptions, it will be possible to progressively close in on the full parameter space of WIMPs by searching for radio signals in dSphs with SKA and its precursors.

  20. Multi-resolution flow simulations by smoothed particle hydrodynamics via domain decomposition

    NASA Astrophysics Data System (ADS)

    Bian, Xin; Li, Zhen; Tang, Yu-Hang; Karniadakis, George

    2015-11-01

    We present a methodology to concurrently couple particle-based methods via a domain decomposition (DD) technique for simulating viscous flows. In particular, we select two resolutions of the smoothed particle hydrodynamics (SPH) method as demonstration. Within the DD framework, a simulation domain is decomposed into two (or more) overlapping sub-domains, each of which has an individual particle scale determined by the local flow physics. Consistency of the two sub-domains is achieved in the overlap region by matching the two independent simulations based on Lagrangian interpolation of state variables and fluxes. The domain decomposition based SPH method (DD-SPH) employs different spatial and temporal resolutions, and hence, each sub-domain has its own smoothing length and time step. As a consequence, particle refinement and de-refinement are performed asynchronously according to individual time advancement of each sub-domain. The proposed strategy avoids SPH force interactions between different resolutions on purpose, so that coupling, in principle, can go beyond SPH - SPH, and may allow SPH to be coupled with other mesoscopic or microscopic particle methods. The DD-SPH method is validated first for a transient Couette flow, where simulation results base. US DOE Collaboratory on Mathematics for Mesoscopic Modeling of Materials (CM4).

  1. Numerical Modeling of Tsunami Bore Attenuation and Extreme Hydrodynamic Impact Forces Using the SPH Method

    NASA Astrophysics Data System (ADS)

    Piche, Steffanie

    Understanding the impact of coastal forests on the propagation of rapidly advancing onshore tsunami bores is difficult due to complexity of this phenomenon and the large amount of parameters which must be considered. The research presented in the thesis focuses on understanding the protective effect of the coastal forest on the forces generated by the tsunami and its ability to reduce the propagation and velocity of the incoming tsunami bore. Concern for this method of protecting the coast from tsunamis is based on the effectiveness of the forest and its ability to withstand the impact forces caused by both the bore and the debris carried along by it. The devastation caused by the tsunami has been investigated in recent examples such as the 2011 Tohoku Tsunami in Japan and the Indian Ocean Tsunami which occurred in 2004. This research examines the reduction of the spatial extent of the tsunami bore inundation and runup due to the presence of the coastal forest, and attempts to quantify the impact forces induced by the tsunami bores and debris impact on the structures. This research work was performed using a numerical model based on the Smoothed Particle Hydrodynamics (SPH) method which is a single-phase three-dimensional model. The simulations performed in this study were separated into three sections. The first section focused on the reduction of the extent of the tsunami inundation and the magnitude of the bore velocity by the coastal forest. This section included the analysis of the hydrodynamic forces acting on the individual trees. The second section involved the numerical modeling of some of the physical laboratory experiments performed by researchers at the University of Ottawa, in cooperation with colleagues from the Ocean, Coastal and River Engineering Lab at the National Research Council, Ottawa, in an attempt to validate the movement and impact forces of floating driftwood on a column. The final section modeled the movement and impact of floating debris

  2. Perspectives for spintronics in 2D materials

    NASA Astrophysics Data System (ADS)

    Han, Wei

    2016-03-01

    The past decade has been especially creative for spintronics since the (re)discovery of various two dimensional (2D) materials. Due to the unusual physical characteristics, 2D materials have provided new platforms to probe the spin interaction with other degrees of freedom for electrons, as well as to be used for novel spintronics applications. This review briefly presents the most important recent and ongoing research for spintronics in 2D materials.

  3. Incompressible-compressible flows with a transient discontinuous interface using smoothed particle hydrodynamics (SPH)

    NASA Astrophysics Data System (ADS)

    Lind, S. J.; Stansby, P. K.; Rogers, B. D.

    2016-03-01

    A new two-phase incompressible-compressible Smoothed Particle Hydrodynamics (SPH) method has been developed where the interface is discontinuous in density. This is applied to water-air problems with a large density difference. The incompressible phase requires surface pressure from the compressible phase and the compressible phase requires surface velocity from the incompressible phase. Compressible SPH is used for the air phase (with the isothermal stiffened ideal gas equation of state for low Mach numbers) and divergence-free (projection based) incompressible SPH is used for the water phase, with the addition of Fickian shifting to produce sufficiently homogeneous particle distributions to enable stable, accurate, converged solutions without noise in the pressure field. Shifting is a purely numerical particle regularisation device. The interface remains a true material discontinuity at a high density ratio with continuous pressure and velocity at the interface. This approach with the physics of compressibility and incompressibility represented is novel within SPH and is validated against semi-analytical results for a two-phase elongating and oscillating water drop, analytical results for low amplitude inviscid standing waves, the Kelvin-Helmholtz instability, and a dam break problem with high interface distortion and impact on a vertical wall where experimental and other numerical results are available.

  4. Annotated Bibliography of EDGE2D Use

    SciTech Connect

    J.D. Strachan and G. Corrigan

    2005-06-24

    This annotated bibliography is intended to help EDGE2D users, and particularly new users, find existing published literature that has used EDGE2D. Our idea is that a person can find existing studies which may relate to his intended use, as well as gain ideas about other possible applications by scanning the attached tables.

  5. Staring 2-D hadamard transform spectral imager

    DOEpatents

    Gentry, Stephen M.; Wehlburg, Christine M.; Wehlburg, Joseph C.; Smith, Mark W.; Smith, Jody L.

    2006-02-07

    A staring imaging system inputs a 2D spatial image containing multi-frequency spectral information. This image is encoded in one dimension of the image with a cyclic Hadamarid S-matrix. The resulting image is detecting with a spatial 2D detector; and a computer applies a Hadamard transform to recover the encoded image.

  6. Sparse radar imaging using 2D compressed sensing

    NASA Astrophysics Data System (ADS)

    Hou, Qingkai; Liu, Yang; Chen, Zengping; Su, Shaoying

    2014-10-01

    Radar imaging is an ill-posed linear inverse problem and compressed sensing (CS) has been proved to have tremendous potential in this field. This paper surveys the theory of radar imaging and a conclusion is drawn that the processing of ISAR imaging can be denoted mathematically as a problem of 2D sparse decomposition. Based on CS, we propose a novel measuring strategy for ISAR imaging radar and utilize random sub-sampling in both range and azimuth dimensions, which will reduce the amount of sampling data tremendously. In order to handle 2D reconstructing problem, the ordinary solution is converting the 2D problem into 1D by Kronecker product, which will increase the size of dictionary and computational cost sharply. In this paper, we introduce the 2D-SL0 algorithm into the reconstruction of imaging. It is proved that 2D-SL0 can achieve equivalent result as other 1D reconstructing methods, but the computational complexity and memory usage is reduced significantly. Moreover, we will state the results of simulating experiments and prove the effectiveness and feasibility of our method.

  7. AnisWave2D: User's Guide to the 2d Anisotropic Finite-DifferenceCode

    SciTech Connect

    Toomey, Aoife

    2005-01-06

    This document describes a parallel finite-difference code for modeling wave propagation in 2D, fully anisotropic materials. The code utilizes a mesh refinement scheme to improve computational efficiency. Mesh refinement allows the grid spacing to be tailored to the velocity model, so that fine grid spacing can be used in low velocity zones where the seismic wavelength is short, and coarse grid spacing can be used in zones with higher material velocities. Over-sampling of the seismic wavefield in high velocity zones is therefore avoided. The code has been implemented to run in parallel over multiple processors and allows large-scale models and models with large velocity contrasts to be simulated with ease.

  8. Theory for spiralling ions for 2D FT-ICR and comparison with precessing magnetization vectors in 2D NMR.

    PubMed

    Sehgal, Akansha Ashvani; Pelupessy, Philippe; Rolando, Christian; Bodenhausen, Geoffrey

    2016-04-01

    Two-dimensional (2D) Fourier transform ion cyclotron resonance (FT-ICR) offers an approach to mass spectrometry (MS) that pursuits similar objectives as MS/MS experiments. While the latter must focus on one ion species at a time, 2D FT ICR can examine all possible correlations due to ion fragmentation in a single experiment: correlations between precursors, charged and neutral fragments. We revisited the original 2D FT-ICR experiment that has hitherto fallen short of stimulating significant analytical applications, probably because it is technically demanding. These shortcomings can now be overcome by improved FT-ICR instrumentation and computer hard- and software. We seek to achieve a better understanding of the intricacies of the behavior of ions during a basic two-dimensional ICR sequence comprising three simple monochromatic pulses. Through simulations based on Lorentzian equations, we have mapped the ion trajectories for different pulse durations and phases. PMID:26974979

  9. Light field morphing using 2D features.

    PubMed

    Wang, Lifeng; Lin, Stephen; Lee, Seungyong; Guo, Baining; Shum, Heung-Yeung

    2005-01-01

    We present a 2D feature-based technique for morphing 3D objects represented by light fields. Existing light field morphing methods require the user to specify corresponding 3D feature elements to guide morph computation. Since slight errors in 3D specification can lead to significant morphing artifacts, we propose a scheme based on 2D feature elements that is less sensitive to imprecise marking of features. First, 2D features are specified by the user in a number of key views in the source and target light fields. Then the two light fields are warped view by view as guided by the corresponding 2D features. Finally, the two warped light fields are blended together to yield the desired light field morph. Two key issues in light field morphing are feature specification and warping of light field rays. For feature specification, we introduce a user interface for delineating 2D features in key views of a light field, which are automatically interpolated to other views. For ray warping, we describe a 2D technique that accounts for visibility changes and present a comparison to the ideal morphing of light fields. Light field morphing based on 2D features makes it simple to incorporate previous image morphing techniques such as nonuniform blending, as well as to morph between an image and a light field. PMID:15631126

  10. 2D materials for nanophotonic devices

    NASA Astrophysics Data System (ADS)

    Xu, Renjing; Yang, Jiong; Zhang, Shuang; Pei, Jiajie; Lu, Yuerui

    2015-12-01

    Two-dimensional (2D) materials have become very important building blocks for electronic, photonic, and phononic devices. The 2D material family has four key members, including the metallic graphene, transition metal dichalcogenide (TMD) layered semiconductors, semiconducting black phosphorous, and the insulating h-BN. Owing to the strong quantum confinements and defect-free surfaces, these atomically thin layers have offered us perfect platforms to investigate the interactions among photons, electrons and phonons. The unique interactions in these 2D materials are very important for both scientific research and application engineering. In this talk, I would like to briefly summarize and highlight the key findings, opportunities and challenges in this field. Next, I will introduce/highlight our recent achievements. We demonstrated atomically thin micro-lens and gratings using 2D MoS2, which is the thinnest optical component around the world. These devices are based on our discovery that the elastic light-matter interactions in highindex 2D materials is very strong. Also, I would like to introduce a new two-dimensional material phosphorene. Phosphorene has strongly anisotropic optical response, which creates 1D excitons in a 2D system. The strong confinement in phosphorene also enables the ultra-high trion (charged exciton) binding energies, which have been successfully measured in our experiments. Finally, I will briefly talk about the potential applications of 2D materials in energy harvesting.

  11. Inertial solvation in femtosecond 2D spectra

    NASA Astrophysics Data System (ADS)

    Hybl, John; Albrecht Ferro, Allison; Farrow, Darcie; Jonas, David

    2001-03-01

    We have used 2D Fourier transform spectroscopy to investigate polar solvation. 2D spectroscopy can reveal molecular lineshapes beneath ensemble averaged spectra and freeze molecular motions to give an undistorted picture of the microscopic dynamics of polar solvation. The transition from "inhomogeneous" to "homogeneous" 2D spectra is governed by both vibrational relaxation and solvent motion. Therefore, the time dependence of the 2D spectrum directly reflects the total response of the solvent-solute system. IR144, a cyanine dye with a dipole moment change upon electronic excitation, was used to probe inertial solvation in methanol and propylene carbonate. Since the static Stokes' shift of IR144 in each of these solvents is similar, differences in the 2D spectra result from solvation dynamics. Initial results indicate that the larger propylene carbonate responds more slowly than methanol, but appear to be inconsistent with rotational estimates of the inertial response. To disentangle intra-molecular vibrations from solvent motion, the 2D spectra of IR144 will be compared to the time-dependent 2D spectra of the structurally related nonpolar cyanine dye HDITCP.

  12. Internal Photoemission Spectroscopy of 2-D Materials

    NASA Astrophysics Data System (ADS)

    Nguyen, Nhan; Li, Mingda; Vishwanath, Suresh; Yan, Rusen; Xiao, Shudong; Xing, Huili; Cheng, Guangjun; Hight Walker, Angela; Zhang, Qin

    Recent research has shown the great benefits of using 2-D materials in the tunnel field-effect transistor (TFET), which is considered a promising candidate for the beyond-CMOS technology. The on-state current of TFET can be enhanced by engineering the band alignment of different 2D-2D or 2D-3D heterostructures. Here we present the internal photoemission spectroscopy (IPE) approach to determine the band alignments of various 2-D materials, in particular SnSe2 and WSe2, which have been proposed for new TFET designs. The metal-oxide-2-D semiconductor test structures are fabricated and characterized by IPE, where the band offsets from the 2-D semiconductor to the oxide conduction band minimum are determined by the threshold of the cube root of IPE yields as a function of photon energy. In particular, we find that SnSe2 has a larger electron affinity than most semiconductors and can be combined with other semiconductors to form near broken-gap heterojunctions with low barrier heights which can produce a higher on-state current. The details of data analysis of IPE and the results from Raman spectroscopy and spectroscopic ellipsometry measurements will also be presented and discussed.

  13. Kinematics of segregating granular mixtures in quasi-2D heaps

    NASA Astrophysics Data System (ADS)

    Fan, Yi; Umbanhowar, Paul; Ottino, Julio; Lueptow, Richard

    2012-11-01

    Segregation of granular mixtures of different sized particles in heap flow appears in a variety of contexts. Our recent experiments showed that when bi-disperse mixtures of different sized spherical particles fill a quasi-two dimensional (2D) silo, three different final heap configurations - stratified, segregated, and mixed - occur, depending on either 2D flow rate or heap rise velocity. However, since it is difficult to measure the kinematic details of the segregating granular mixtures in heap flow experimentally, the underlying mechanisms for how 2D flow rate or heap rise velocity influences final particle configurations have not been well understood. In this work, we use the discrete element method (DEM) to simulate heap flow of bi-disperse mixtures in experimental scale quasi-2D heaps. The final particle distributions in the simulations agree quantitatively with experiments. We measure several key kinematic properties of the segregating granular mixtures including the local flow rate, velocity, and flowing layer thickness. We correlate the characteristics of these kinematic properties with the local particle distributions of the mixtures. This provides new insights for understanding the mechanisms of segregation and stratification in heap flow including the linear decrease in flow rate and maximum velocity down the heap as well as the relatively constant flowing layer thickness along the length of the heap. Funded by Dow Chemical Co.

  14. Water pipe flow simulation using improved virtual particles on smoothed particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Ting, E. S.; Yeak, S. H.

    2014-12-01

    Smoothed Particle Hydrodynamics (SPH) is a meshless method used widely to solve problems such as fluid flows. Due to its meshless property, it is ideal to solve problems on complex geometry. In this paper, boundary treatment were implied for the rectangular pipe flow simulations using SPH. The repulsive force is applied to the boundary particles along with the improved virtual particles on different geometry alignment. The water flow is solved using incompressible SPH and will be examined throughout the simulation. Results from this simulation will be compared with single layered virtual particles. Based on the result of the study, it is found that the improved virtual particles is more accurate and stable.

  15. Does fluid infiltration affect the motion of sediment grains? - A 3-D numerical modelling approach using SPH

    NASA Astrophysics Data System (ADS)

    Bartzke, Gerhard; Rogers, Benedict D.; Fourtakas, Georgios; Mokos, Athanasios; Huhn, Katrin

    2016-04-01

    The processes that cause the creation of a variety of sediment morphological features, e.g. laminated beds, ripples, or dunes, are based on the initial motion of individual sediment grains. However, with experimental techniques it is difficult to measure the flow characteristics, i.e., the velocity of the pore water flow in sediments, at a sufficient resolution and in a non-intrusive way. As a result, the role of fluid infiltration at the surface and in the interior affecting the initiation of motion of a sediment bed is not yet fully understood. Consequently, there is a strong need for numerical models, since these are capable of quantifying fluid driven sediment transport processes of complex sediment beds composed of irregular shapes. The numerical method Smoothed Particle Hydrodynamics (SPH) satisfies this need. As a meshless and Lagrangian technique, SPH is ideally suited to simulating flows in sediment beds composed of various grain shapes, but also flow around single grains at a high temporal and spatial resolution. The solver chosen is DualSPHysics (www.dual.sphysics.org) since this is validated for a range of flow conditions. For the present investigation a 3-D numerical flume model was generated using SPH with a length of 4.0 cm, a width of 0.05 cm and a height of 0.2 cm where mobile sediment particles were deposited in a recess. An experimental setup was designed to test sediment configurations composed of irregular grain shapes (grain diameter, D50=1000 μm). Each bed consisted of 3500 mobile objects. After the bed generation process, the entire domain was flooded with 18 million fluid particles. To drive the flow, an oscillating motion perpendicular to the bed was applied to the fluid, reaching a peak value of 0.3 cm/s, simulating 4 seconds of real time. The model results showed that flow speeds decreased logarithmically from the top of the domain towards the surface of the beds, indicating a fully developed boundary layer. Analysis of the fluid

  16. Brittle damage models in DYNA2D

    SciTech Connect

    Faux, D.R.

    1997-09-01

    DYNA2D is an explicit Lagrangian finite element code used to model dynamic events where stress wave interactions influence the overall response of the system. DYNA2D is often used to model penetration problems involving ductile-to-ductile impacts; however, with the advent of the use of ceramics in the armor-anti-armor community and the need to model damage to laser optics components, good brittle damage models are now needed in DYNA2D. This report will detail the implementation of four brittle damage models in DYNA2D, three scalar damage models and one tensor damage model. These new brittle damage models are then used to predict experimental results from three distinctly different glass damage problems.

  17. Matrix models of 2d gravity

    SciTech Connect

    Ginsparg, P.

    1991-01-01

    These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.

  18. Matrix models of 2d gravity

    SciTech Connect

    Ginsparg, P.

    1991-12-31

    These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.

  19. 2D electronic materials for army applications

    NASA Astrophysics Data System (ADS)

    O'Regan, Terrance; Perconti, Philip

    2015-05-01

    The record electronic properties achieved in monolayer graphene and related 2D materials such as molybdenum disulfide and hexagonal boron nitride show promise for revolutionary high-speed and low-power electronic devices. Heterogeneous 2D-stacked materials may create enabling technology for future communication and computation applications to meet soldier requirements. For instance, transparent, flexible and even wearable systems may become feasible. With soldier and squad level electronic power demands increasing, the Army is committed to developing and harnessing graphene-like 2D materials for compact low size-weight-and-power-cost (SWAP-C) systems. This paper will review developments in 2D electronic materials at the Army Research Laboratory over the last five years and discuss directions for future army applications.

  20. 2-d Finite Element Code Postprocessor

    Energy Science and Technology Software Center (ESTSC)

    1996-07-15

    ORION is an interactive program that serves as a postprocessor for the analysis programs NIKE2D, DYNA2D, TOPAZ2D, and CHEMICAL TOPAZ2D. ORION reads binary plot files generated by the two-dimensional finite element codes currently used by the Methods Development Group at LLNL. Contour and color fringe plots of a large number of quantities may be displayed on meshes consisting of triangular and quadrilateral elements. ORION can compute strain measures, interface pressures along slide lines, reaction forcesmore » along constrained boundaries, and momentum. ORION has been applied to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.« less

  1. Chemical Approaches to 2D Materials.

    PubMed

    Samorì, Paolo; Palermo, Vincenzo; Feng, Xinliang

    2016-08-01

    Chemistry plays an ever-increasing role in the production, functionalization, processing and applications of graphene and other 2D materials. This special issue highlights a selection of enlightening chemical approaches to 2D materials, which nicely reflect the breadth of the field and convey the excitement of the individuals involved in it, who are trying to translate graphene and related materials from the laboratory into a real, high-impact technology. PMID:27478083

  2. Extended 2D generalized dilaton gravity theories

    NASA Astrophysics Data System (ADS)

    de Mello, R. O.

    2008-09-01

    We show that an anomaly-free description of matter in (1+1) dimensions requires a deformation of the 2D relativity principle, which introduces a non-trivial centre in the 2D Poincaré algebra. Then we work out the reduced phase space of the anomaly-free 2D relativistic particle, in order to show that it lives in a noncommutative 2D Minkowski space. Moreover, we build a Gaussian wave packet to show that a Planck length is well defined in two dimensions. In order to provide a gravitational interpretation for this noncommutativity, we propose to extend the usual 2D generalized dilaton gravity models by a specific Maxwell component, which guages the extra symmetry associated with the centre of the 2D Poincaré algebra. In addition, we show that this extension is a high energy correction to the unextended dilaton theories that can affect the topology of spacetime. Further, we couple a test particle to the general extended dilaton models with the purpose of showing that they predict a noncommutativity in curved spacetime, which is locally described by a Moyal star product in the low energy limit. We also conjecture a probable generalization of this result, which provides strong evidence that the noncommutativity is described by a certain star product which is not of the Moyal type at high energies. Finally, we prove that the extended dilaton theories can be formulated as Poisson Sigma models based on a nonlinear deformation of the extended Poincaré algebra.

  3. An inverse design method for 2D airfoil

    NASA Astrophysics Data System (ADS)

    Liang, Zhi-Yong; Cui, Peng; Zhang, Gen-Bao

    2010-03-01

    The computational method for aerodynamic design of aircraft is applied more universally than before, in which the design of an airfoil is a hot problem. The forward problem is discussed by most relative papers, but inverse method is more useful in practical designs. In this paper, the inverse design of 2D airfoil was investigated. A finite element method based on the variational principle was used for carrying out. Through the simulation, it was shown that the method was fit for the design.

  4. Numerical Simulation of Crater Creating Process in Dynamic Replacement Method by Smooth Particle Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Danilewicz, Andrzej; Sikora, Zbigniew

    2015-02-01

    A theoretical base of SPH method, including the governing equations, discussion of importance of the smoothing function length, contact formulation, boundary treatment and finally utilization in hydrocode simulations are presented. An application of SPH to a real case of large penetrations (crater creating) into the soil caused by falling mass in Dynamic Replacement Method is discussed. An influence of particles spacing on method accuracy is presented. An example calculated by LS-DYNA software is discussed. Chronological development of Smooth Particle Hydrodynamics is presented. Theoretical basics of SPH method stability and consistency in SPH formulation, artificial viscosity and boundary treatment are discussed. Time integration techniques with stability conditions, SPH+FEM coupling, constitutive equation and equation of state (EOS) are presented as well.

  5. Numerical Studies on the Explosive Welding by Smoothed Particle Hydrodynamics (sph)

    NASA Astrophysics Data System (ADS)

    Tanaka, Katsumi

    2007-12-01

    A particular characteristic of an explosively produced weld is that the profile of the weld interface often has a regular wavy appearance. Effects of detached shock wave and jetting on the metal interface of explosive welding has been considered by SPH. Numerical results show wavy interface which is observed in several experiments. A high speed jet between interface and Karman vortex after oblique impact of a flyer plate to a parent plate were major mechanism of explosive welding.

  6. Numerical Studies on the Explosive Welding by Smoothed Particle Hydrodynamics (SPH)

    NASA Astrophysics Data System (ADS)

    Tanaka, Katsumi

    2007-06-01

    A particular characteristic of an explosively produced weld is that the profile of the weld interface often has a regular wavy appearance. An effect of detached shock wave and jetting on the metal interface of explosive welding has been shown by SPH (Smoothed particle hydrodynamics). Numerical results show wavy interface which is observed in several experiments. High speed jet between interface and Karman vortex after oblique impact of a flyer plate to a parent plate were major mechanism of explosive welding.

  7. Analysis of novel sph (spherocytosis) alleles in mice reveals allele-specific loss of band 3 and adducin in α-spectrin–deficient red cells

    PubMed Central

    Robledo, Raymond F.; Lambert, Amy J.; Birkenmeier, Connie S.; Cirlan, Marius V.; Cirlan, Andreea Flavia M.; Campagna, Dean R.; Lux, Samuel E.

    2010-01-01

    Five spontaneous, allelic mutations in the α-spectrin gene, Spna1, have been identified in mice (spherocytosis [sph], sph1J, sph2J, sph2BC, sphDem). All cause severe hemolytic anemia. Here, analysis of 3 new alleles reveals previously unknown consequences of red blood cell (RBC) spectrin deficiency. In sph3J, a missense mutation (H2012Y) in repeat 19 introduces a cryptic splice site resulting in premature termination of translation. In sphIhj, a premature stop codon occurs (Q1853Stop) in repeat 18. Both mutations result in markedly reduced RBC membrane spectrin content, decreased band 3, and absent β-adducin. Reevaluation of available, previously described sph alleles reveals band 3 and adducin deficiency as well. In sph4J, a missense mutation occurs in the C-terminal EF hand domain (C2384Y). Notably, an equally severe hemolytic anemia occurs despite minimally decreased membrane spectrin with normal band 3 levels and present, although reduced, β-adducin. The severity of anemia in sph4J indicates that the highly conserved cysteine residue at the C-terminus of α-spectrin participates in interactions critical to membrane stability. The data reinforce the notion that a membrane bridge in addition to the classic protein 4.1-p55-glycophorin C linkage exists at the RBC junctional complex that involves interactions between spectrin, adducin, and band 3. PMID:20056793

  8. Variable stars in Local Group Galaxies - II. Sculptor dSph

    NASA Astrophysics Data System (ADS)

    Martínez-Vázquez, C. E.; Stetson, P. B.; Monelli, M.; Bernard, E. J.; Fiorentino, G.; Gallart, C.; Bono, G.; Cassisi, S.; Dall'Ora, M.; Ferraro, I.; Iannicola, G.; Walker, A. R.

    2016-08-01

    We present the identification of 634 variable stars in the Milky Way dSph satellite Sculptor based on archival ground-based optical observations spanning ˜24 years and covering ˜ 2.5 deg2. We employed the same methodologies as the "Homogeneous Photometry" series published by Stetson. In particular, we have identified and characterized the largest (536) RR Lyrae sample so far in a Milky Way dSph satellite. We have also detected four Anomalous Cepheids, 23 SX Phoenicis stars, five eclipsing binaries, three field variable stars, three peculiar variable stars located above the horizontal branch - near to the locus of BL Herculis - that we are unable to classify properly. Additionally we identify 37 Long Period Variables plus 23 probable variable stars, for which the current data do not allow us to determine the period. We report positions and finding charts for all the variable stars, and basic properties (period, amplitude, mean magnitude) and light curves for 574 of them. We discuss the properties of the RR Lyrae stars in the Bailey diagram, which supports the coexistence of subpopulations with different chemical compositions. We estimate the mean mass of Anomalous Cepheids (˜1.5M⊙) and SX Phoenicis stars (˜1M⊙). We discuss in detail the nature of the former. The connections between the properties of the different families of variable stars are discussed in the context of the star formation history of the Sculptor dSph galaxy.

  9. Validation and testing of the VAM2D computer code

    SciTech Connect

    Kool, J.B.; Wu, Y.S. )

    1991-10-01

    This document describes two modeling studies conducted by HydroGeoLogic, Inc. for the US NRC under contract no. NRC-04089-090, entitled, Validation and Testing of the VAM2D Computer Code.'' VAM2D is a two-dimensional, variably saturated flow and transport code, with applications for performance assessment of nuclear waste disposal. The computer code itself is documented in a separate NUREG document (NUREG/CR-5352, 1989). The studies presented in this report involve application of the VAM2D code to two diverse subsurface modeling problems. The first one involves modeling of infiltration and redistribution of water and solutes in an initially dry, heterogeneous field soil. This application involves detailed modeling over a relatively short, 9-month time period. The second problem pertains to the application of VAM2D to the modeling of a waste disposal facility in a fractured clay, over much larger space and time scales and with particular emphasis on the applicability and reliability of using equivalent porous medium approach for simulating flow and transport in fractured geologic media. Reflecting the separate and distinct nature of the two problems studied, this report is organized in two separate parts. 61 refs., 31 figs., 9 tabs.

  10. Numerical Simulation of Debris Cloud Propagation inside Gas-Filled Pressure Vessels under Hypervelocity Impact

    NASA Astrophysics Data System (ADS)

    Gai, F. F.; Pang, B. J.; Guan, G. S.

    2009-03-01

    In the paper SPH methods in AUTODYN-2D is used to investigate the characteristics of debris clouds propagation inside the gas-filled pressure vessels for hypervelocity impact on the pressure vessels. The effect of equation of state on debris cloud has been investigated. The numerical simulation performed to analyze the effect of the gas pressure and the impact condition on the propagation of the debris clouds. The result shows that the increase of gas pressure can reduce the damage of the debris clouds' impact on the back wall of vessels when the pressure value is in a certain range. The smaller projectile lead the axial velocity of the debris cloud to stronger deceleration and the debris cloud deceleration is increasing with increased impact velocity. The time of venting begins to occur is related to the "vacuum column" at the direction of impact-axial. The paper studied the effect of impact velocities on gas shock wave.

  11. The process of earthflow propagation: insights from an application of the SPH technique to a case history

    NASA Astrophysics Data System (ADS)

    Lollino, Piernicola; Giordan, Daniele; Allasia, Paolo; Pastor, Manuel

    2016-04-01

    An intense reactivation of a large earthflow (about 6 million m3 of soil debris) took place in Montaguto (Southern Apennines, Italy) between 2005 and 2006 as a consequence of the retrogression of a sliding process in the source area at the top of the slope. The earthflow run-out was approximately 2-2.5 km long, with the landslide mass thickness approximately ranging between 5 m and 30 m. Relevant damages were produced at the toe of the slope, since important infrastructures hereby located were covered by large volumes of landslide detritum. In the transition area, that is just downslope the source area, the landslide soil mass was channelized and transformed into a viscous soil flowing down through a natural depression channel, with an average displacement rate estimated to range between 3 and 7 m/day. In this work an application of the Smoothed Particle Hydrodynamics method has been carried out in order to simulate both the main features of the earthflow propagation, that is the direction and the thickness of the flowing mass, as well as to investigate some factors of the soil mechanical behavior that might have controlled the earthflow mobility. In particular, two different assumptions concerning the soil rheology, i.e. Bingham visco-plasticity and frictional-consolidating soil, the first complying more with the assumption of a flow-like behavior and the latter with a soil-like behavior of the landslide mass, have been made for comparison purposes. Based on the experiences gained from previous authors concerning the in-situ features of similar earthflow soil masses, these landslides are thought to behave more as a viscous fluid during the very first stages of propagation due to phase transition processes and, later on, to recover a soil-like behavior, therefore characterized by sliding mechanism, due to soil consolidation processes. Field evidences of consolidation processes have indeed been observed in situ in recent years based on pore water pressure monitoring

  12. Optical modulators with 2D layered materials

    NASA Astrophysics Data System (ADS)

    Sun, Zhipei; Martinez, Amos; Wang, Feng

    2016-04-01

    Light modulation is an essential operation in photonics and optoelectronics. With existing and emerging technologies increasingly demanding compact, efficient, fast and broadband optical modulators, high-performance light modulation solutions are becoming indispensable. The recent realization that 2D layered materials could modulate light with superior performance has prompted intense research and significant advances, paving the way for realistic applications. In this Review, we cover the state of the art of optical modulators based on 2D materials, including graphene, transition metal dichalcogenides and black phosphorus. We discuss recent advances employing hybrid structures, such as 2D heterostructures, plasmonic structures, and silicon and fibre integrated structures. We also take a look at the future perspectives and discuss the potential of yet relatively unexplored mechanisms, such as magneto-optic and acousto-optic modulation.

  13. Large Area Synthesis of 2D Materials

    NASA Astrophysics Data System (ADS)

    Vogel, Eric

    Transition metal dichalcogenides (TMDs) have generated significant interest for numerous applications including sensors, flexible electronics, heterostructures and optoelectronics due to their interesting, thickness-dependent properties. Despite recent progress, the synthesis of high-quality and highly uniform TMDs on a large scale is still a challenge. In this talk, synthesis routes for WSe2 and MoS2 that achieve monolayer thickness uniformity across large area substrates with electrical properties equivalent to geological crystals will be described. Controlled doping of 2D semiconductors is also critically required. However, methods established for conventional semiconductors, such as ion implantation, are not easily applicable to 2D materials because of their atomically thin structure. Redox-active molecular dopants will be demonstrated which provide large changes in carrier density and workfunction through the choice of dopant, treatment time, and the solution concentration. Finally, several applications of these large-area, uniform 2D materials will be described including heterostructures, biosensors and strain sensors.

  14. 2D microwave imaging reflectometer electronics

    SciTech Connect

    Spear, A. G.; Domier, C. W. Hu, X.; Muscatello, C. M.; Ren, X.; Luhmann, N. C.; Tobias, B. J.

    2014-11-15

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program.

  15. 2D microwave imaging reflectometer electronics

    NASA Astrophysics Data System (ADS)

    Spear, A. G.; Domier, C. W.; Hu, X.; Muscatello, C. M.; Ren, X.; Tobias, B. J.; Luhmann, N. C.

    2014-11-01

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program.

  16. 2D microwave imaging reflectometer electronics.

    PubMed

    Spear, A G; Domier, C W; Hu, X; Muscatello, C M; Ren, X; Tobias, B J; Luhmann, N C

    2014-11-01

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program. PMID:25430247

  17. 2D-Crystal-Based Functional Inks.

    PubMed

    Bonaccorso, Francesco; Bartolotta, Antonino; Coleman, Jonathan N; Backes, Claudia

    2016-08-01

    The possibility to produce and process graphene, related 2D crystals, and heterostructures in the liquid phase makes them promising materials for an ever-growing class of applications as composite materials, sensors, in flexible optoelectronics, and energy storage and conversion. In particular, the ability to formulate functional inks with on-demand rheological and morphological properties, i.e., lateral size and thickness of the dispersed 2D crystals, is a step forward toward the development of industrial-scale, reliable, inexpensive printing/coating processes, a boost for the full exploitation of such nanomaterials. Here, the exfoliation strategies of graphite and other layered crystals are reviewed, along with the advances in the sorting of lateral size and thickness of the exfoliated sheets together with the formulation of functional inks and the current development of printing/coating processes of interest for the realization of 2D-crystal-based devices. PMID:27273554

  18. The 2D lingual appliance system.

    PubMed

    Cacciafesta, Vittorio

    2013-09-01

    The two-dimensional (2D) lingual bracket system represents a valuable treatment option for adult patients seeking a completely invisible orthodontic appliance. The ease of direct or simplified indirect bonding of 2D lingual brackets in combination with low friction mechanics makes it possible to achieve a good functional and aesthetic occlusion, even in the presence of a severe malocclusion. The use of a self-ligating bracket significantly reduces chair-side time for the orthodontist, and the low-profile bracket design greatly improves patient comfort. PMID:24005953

  19. Inkjet printing of 2D layered materials.

    PubMed

    Li, Jiantong; Lemme, Max C; Östling, Mikael

    2014-11-10

    Inkjet printing of 2D layered materials, such as graphene and MoS2, has attracted great interests for emerging electronics. However, incompatible rheology, low concentration, severe aggregation and toxicity of solvents constitute critical challenges which hamper the manufacturing efficiency and product quality. Here, we introduce a simple and general technology concept (distillation-assisted solvent exchange) to efficiently overcome these challenges. By implementing the concept, we have demonstrated excellent jetting performance, ideal printing patterns and a variety of promising applications for inkjet printing of 2D layered materials. PMID:25169938

  20. Measurement of 2D birefringence distribution

    NASA Astrophysics Data System (ADS)

    Noguchi, Masato; Ishikawa, Tsuyoshi; Ohno, Masahiro; Tachihara, Satoru

    1992-10-01

    A new measuring method of 2-D birefringence distribution has been developed. It has not been an easy job to get a birefringence distribution in an optical element with conventional ellipsometry because of its lack of scanning means. Finding an analogy between the rotating analyzer method in ellipsometry and the phase-shifting method in recently developed digital interferometry, we have applied the phase-shifting algorithm to ellipsometry, and have developed a new method that makes the measurement of 2-D birefringence distribution easy and possible. The system contains few moving parts, assuring reliability, and measures a large area of a sample at one time, making the measuring time very short.

  1. 2-D Continuous Wavelet Transform for ESPI phase-maps denoising

    NASA Astrophysics Data System (ADS)

    Escalante, Nivia; Villa, Jesús; de la Rosa, Ismael; de la Rosa, Enrique; González-Ramírez, Efrén; Gutiérrez, Osvaldo; Olvera, Carlos; Araiza, María

    2013-09-01

    In this work we introduce a 2-D Continuous Wavelet Transform (2-D CWT) method for denoising ESPI phase-maps. Multiresolution analysis with 2-D wavelets can provide high directional sensitivity and high anisotropy which are proper characteristics for this task. In particular, the 2-D CWT method using Gabor atoms (Gabor mother wavelets) which can naturally model phase fringes, has a good performance against noise and can preserve phase fringes. We describe the theoretical basis of the proposed technique and show some experimental results with real and simulated ESPI phase-maps. As can be verified the proposal is robust and effective.

  2. Region-based Statistical Analysis of 2D PAGE Images

    PubMed Central

    Li, Feng; Seillier-Moiseiwitsch, Françoise; Korostyshevskiy, Valeriy R.

    2011-01-01

    A new comprehensive procedure for statistical analysis of two-dimensional polyacrylamide gel electrophoresis (2D PAGE) images is proposed, including protein region quantification, normalization and statistical analysis. Protein regions are defined by the master watershed map that is obtained from the mean gel. By working with these protein regions, the approach bypasses the current bottleneck in the analysis of 2D PAGE images: it does not require spot matching. Background correction is implemented in each protein region by local segmentation. Two-dimensional locally weighted smoothing (LOESS) is proposed to remove any systematic bias after quantification of protein regions. Proteins are separated into mutually independent sets based on detected correlations, and a multivariate analysis is used on each set to detect the group effect. A strategy for multiple hypothesis testing based on this multivariate approach combined with the usual Benjamini-Hochberg FDR procedure is formulated and applied to the differential analysis of 2D PAGE images. Each step in the analytical protocol is shown by using an actual dataset. The effectiveness of the proposed methodology is shown using simulated gels in comparison with the commercial software packages PDQuest and Dymension. We also introduce a new procedure for simulating gel images. PMID:21850152

  3. GEO2D - Two-Dimensional Computer Model of a Ground Source Heat Pump System

    DOE Data Explorer

    James Menart

    2013-06-07

    This file contains a zipped file that contains many files required to run GEO2D. GEO2D is a computer code for simulating ground source heat pump (GSHP) systems in two-dimensions. GEO2D performs a detailed finite difference simulation of the heat transfer occurring within the working fluid, the tube wall, the grout, and the ground. Both horizontal and vertical wells can be simulated with this program, but it should be noted that the vertical wall is modeled as a single tube. This program also models the heat pump in conjunction with the heat transfer occurring. GEO2D simulates the heat pump and ground loop as a system. Many results are produced by GEO2D as a function of time and position, such as heat transfer rates, temperatures and heat pump performance. On top of this information from an economic comparison between the geothermal system simulated and a comparable air heat pump systems or a comparable gas, oil or propane heating systems with a vapor compression air conditioner. The version of GEO2D in the attached file has been coupled to the DOE heating and cooling load software called ENERGYPLUS. This is a great convenience for the user because heating and cooling loads are an input to GEO2D. GEO2D is a user friendly program that uses a graphical user interface for inputs and outputs. These make entering data simple and they produce many plotted results that are easy to understand. In order to run GEO2D access to MATLAB is required. If this program is not available on your computer you can download the program MCRInstaller.exe, the 64 bit version, from the MATLAB website or from this geothermal depository. This is a free download which will enable you to run GEO2D..

  4. Critical Dynamics in Quenched 2D Atomic Gases

    NASA Astrophysics Data System (ADS)

    Larcher, F.; Dalfovo, F.; Proukakis, N. P.

    2016-05-01

    Non-equilibrium dynamics across phase transitions is a subject of intense investigations in diverse physical systems. One of the key issues concerns the validity of the Kibble-Zurek (KZ) scaling law for spontaneous defect creation. The KZ mechanism has been recently studied in cold atoms experiments. Interesting open questions arise in the case of 2D systems, due to the distinct nature of the Berezinskii-Kosterlitz-Thouless (BKT) transition. Our studies rely on the stochastic Gross-Pitaevskii equation. We perform systematic numerical simulations of the spontaneous emergence and subsequent dynamics of vortices in a uniform 2D Bose gas, which is quenched across the BKT phase transition in a controlled manner, focusing on dynamical scaling and KZ-type effects. By varying the transverse confinement, we also look at the extent to which such features can be seen in current experiments. Financial support from EPSRC and Provincia Autonoma di Trento.

  5. 2D ice from first principles: structures and phase transitions

    NASA Astrophysics Data System (ADS)

    Chen, Ji; Schusteritsch, Georg; Pickard, Chris J.; Salzmann, Christoph G.; Michaelides, Angelos

    Despite relevance to disparate areas such as cloud microphysics and tribology, major gaps in the understanding of the structures and phase transitions of low-dimensional water ice remain. Here we report a first principles study of confined 2D ice as a function of pressure. We find that at ambient pressure hexagonal and pentagonal monolayer structures are the two lowest enthalpy phases identified. Upon mild compression the pentagonal structure becomes the most stable and persists up to ca. 2 GPa at which point square and rhombic phases are stable. The square phase agrees with recent experimental observations of square ice confined within graphene sheets. We also find a double layer AA stacked square ice phase, which clarifies the difference between experimental observations and earlier force field simulations. This work provides a fresh perspective on 2D confined ice, highlighting the sensitivity of the structures observed to both the confining pressure and width.

  6. Parallel stitching of 2D materials

    DOE PAGESBeta

    Ling, Xi; Wu, Lijun; Lin, Yuxuan; Ma, Qiong; Wang, Ziqiang; Song, Yi; Yu, Lili; Huang, Shengxi; Fang, Wenjing; Zhang, Xu; et al

    2016-01-27

    Diverse parallel stitched 2D heterostructures, including metal–semiconductor, semiconductor–semiconductor, and insulator–semiconductor, are synthesized directly through selective “sowing” of aromatic molecules as the seeds in the chemical vapor deposition (CVD) method. Lastly, the methodology enables the large-scale fabrication of lateral heterostructures, which offers tremendous potential for its application in integrated circuits.

  7. Parallel Stitching of 2D Materials.

    PubMed

    Ling, Xi; Lin, Yuxuan; Ma, Qiong; Wang, Ziqiang; Song, Yi; Yu, Lili; Huang, Shengxi; Fang, Wenjing; Zhang, Xu; Hsu, Allen L; Bie, Yaqing; Lee, Yi-Hsien; Zhu, Yimei; Wu, Lijun; Li, Ju; Jarillo-Herrero, Pablo; Dresselhaus, Mildred; Palacios, Tomás; Kong, Jing

    2016-03-01

    Diverse parallel stitched 2D heterostructures, including metal-semiconductor, semiconductor-semiconductor, and insulator-semiconductor, are synthesized directly through selective "sowing" of aromatic molecules as the seeds in the chemical vapor deposition (CVD) method. The methodology enables the large-scale fabrication of lateral heterostructures, which offers tremendous potential for its application in integrated circuits. PMID:26813882

  8. Numerical modelling of shock-induced chemical reactions (SICR) in reactive powder mixtures using smoothed particle hydrodynamics (SPH)

    NASA Astrophysics Data System (ADS)

    S, Siva Prasad A. V.; Basu, Sumit

    2015-10-01

    Shock compaction of reactive powder mixtures to synthesize new materials is one of the oldest material processing techniques and has been studied extensively by several researchers over the past few decades. The quantitative connection between the shock energy imparted and the extent of reaction that can be completed in the small time window associated with the passage of the shock wave is complicated and depends on a large variety of parameters. In particular, our understanding of the complex interplay between the thermo-elasto-viscoplastic behaviour of the granular constituents and their temperature dependent, diffusion-limited reaction mechanism may be enriched through careful numerical simulations. A robust numerical model should be able to handle extremely large deformations coupled with diffusion mediated fast reaction kinetics. In this work, a meshfree discrete particle numerical method based on smoothed particle hydrodynamics (SPH) to simulate shock-induced chemical reactions (SICR) in reactive powder mixtures is proposed. We present a numerical strategy to carry out reactions between reactant powder particles and partition the obtained products between the particles in a manner that accounts for the requirement that the total mass of the entire system remains constant as the reactions occur. Instead of solving the reaction-diffusion problem, we propose a ‘pseudo-diffusion’ model in which a distance dependent reaction rate constant is defined to carry out chemical reaction kinetics. This approach mimics the actual reaction-diffusion process at short times. Our numerical model is demonstrated for the well-studied reaction system Nb  +  2Si \\rightleftharpoons NbSi 2 . The predicted mass fractions of the product obtained from the simulations are in agreement with experimental observations. Finally, the effects of impact speed, particle arrangement and mixing ratio on the predicted product mass fractions are discussed.

  9. Application of 2D Non-Graphene Materials and 2D Oxide Nanostructures for Biosensing Technology

    PubMed Central

    Shavanova, Kateryna; Bakakina, Yulia; Burkova, Inna; Shtepliuk, Ivan; Viter, Roman; Ubelis, Arnolds; Beni, Valerio; Starodub, Nickolaj; Yakimova, Rositsa; Khranovskyy, Volodymyr

    2016-01-01

    The discovery of graphene and its unique properties has inspired researchers to try to invent other two-dimensional (2D) materials. After considerable research effort, a distinct “beyond graphene” domain has been established, comprising the library of non-graphene 2D materials. It is significant that some 2D non-graphene materials possess solid advantages over their predecessor, such as having a direct band gap, and therefore are highly promising for a number of applications. These applications are not limited to nano- and opto-electronics, but have a strong potential in biosensing technologies, as one example. However, since most of the 2D non-graphene materials have been newly discovered, most of the research efforts are concentrated on material synthesis and the investigation of the properties of the material. Applications of 2D non-graphene materials are still at the embryonic stage, and the integration of 2D non-graphene materials into devices is scarcely reported. However, in recent years, numerous reports have blossomed about 2D material-based biosensors, evidencing the growing potential of 2D non-graphene materials for biosensing applications. This review highlights the recent progress in research on the potential of using 2D non-graphene materials and similar oxide nanostructures for different types of biosensors (optical and electrochemical). A wide range of biological targets, such as glucose, dopamine, cortisol, DNA, IgG, bisphenol, ascorbic acid, cytochrome and estradiol, has been reported to be successfully detected by biosensors with transducers made of 2D non-graphene materials. PMID:26861346

  10. Application of 2D Non-Graphene Materials and 2D Oxide Nanostructures for Biosensing Technology.

    PubMed

    Shavanova, Kateryna; Bakakina, Yulia; Burkova, Inna; Shtepliuk, Ivan; Viter, Roman; Ubelis, Arnolds; Beni, Valerio; Starodub, Nickolaj; Yakimova, Rositsa; Khranovskyy, Volodymyr

    2016-01-01

    The discovery of graphene and its unique properties has inspired researchers to try to invent other two-dimensional (2D) materials. After considerable research effort, a distinct "beyond graphene" domain has been established, comprising the library of non-graphene 2D materials. It is significant that some 2D non-graphene materials possess solid advantages over their predecessor, such as having a direct band gap, and therefore are highly promising for a number of applications. These applications are not limited to nano- and opto-electronics, but have a strong potential in biosensing technologies, as one example. However, since most of the 2D non-graphene materials have been newly discovered, most of the research efforts are concentrated on material synthesis and the investigation of the properties of the material. Applications of 2D non-graphene materials are still at the embryonic stage, and the integration of 2D non-graphene materials into devices is scarcely reported. However, in recent years, numerous reports have blossomed about 2D material-based biosensors, evidencing the growing potential of 2D non-graphene materials for biosensing applications. This review highlights the recent progress in research on the potential of using 2D non-graphene materials and similar oxide nanostructures for different types of biosensors (optical and electrochemical). A wide range of biological targets, such as glucose, dopamine, cortisol, DNA, IgG, bisphenol, ascorbic acid, cytochrome and estradiol, has been reported to be successfully detected by biosensors with transducers made of 2D non-graphene materials. PMID:26861346

  11. 2D numerical modelling of meandering channel formation

    NASA Astrophysics Data System (ADS)

    XIAO, Y.; ZHOU, G.; YANG, F. S.

    2016-03-01

    A 2D depth-averaged model for hydrodynamic sediment transport and river morphological adjustment was established. The sediment transport submodel takes into account the influence of non-uniform sediment with bed surface armoring and considers the impact of secondary flow in the direction of bed-load transport and transverse slope of the river bed. The bank erosion submodel incorporates a simple simulation method for updating bank geometry during either degradational or aggradational bed evolution. Comparison of the results obtained by the extended model with experimental and field data, and numerical predictions validate that the proposed model can simulate grain sorting in river bends and duplicate the characteristics of meandering river and its development. The results illustrate that by using its control factors, the improved numerical model can be applied to simulate channel evolution under different scenarios and improve understanding of patterning processes.

  12. Explicit 2-D Hydrodynamic FEM Program

    Energy Science and Technology Software Center (ESTSC)

    1996-08-07

    DYNA2D* is a vectorized, explicit, two-dimensional, axisymmetric and plane strain finite element program for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. DYNA2D* contains 13 material models and 9 equations of state (EOS) to cover a wide range of material behavior. The material models implemented in all machine versions are: elastic, orthotropic elastic, kinematic/isotropic elastic plasticity, thermoelastoplastic, soil and crushable foam, linear viscoelastic, rubber, high explosive burn, isotropic elastic-plastic, temperature-dependent elastic-plastic. Themore » isotropic and temperature-dependent elastic-plastic models determine only the deviatoric stresses. Pressure is determined by one of 9 equations of state including linear polynomial, JWL high explosive, Sack Tuesday high explosive, Gruneisen, ratio of polynomials, linear polynomial with energy deposition, ignition and growth of reaction in HE, tabulated compaction, and tabulated.« less

  13. Schottky diodes from 2D germanane

    NASA Astrophysics Data System (ADS)

    Sahoo, Nanda Gopal; Esteves, Richard J.; Punetha, Vinay Deep; Pestov, Dmitry; Arachchige, Indika U.; McLeskey, James T.

    2016-07-01

    We report on the fabrication and characterization of a Schottky diode made using 2D germanane (hydrogenated germanene). When compared to germanium, the 2D structure has higher electron mobility, an optimal band-gap, and exceptional stability making germanane an outstanding candidate for a variety of opto-electronic devices. One-atom-thick sheets of hydrogenated puckered germanium atoms have been synthesized from a CaGe2 framework via intercalation and characterized by XRD, Raman, and FTIR techniques. The material was then used to fabricate Schottky diodes by suspending the germanane in benzonitrile and drop-casting it onto interdigitated metal electrodes. The devices demonstrate significant rectifying behavior and the outstanding potential of this material.

  14. Layer Engineering of 2D Semiconductor Junctions.

    PubMed

    He, Yongmin; Sobhani, Ali; Lei, Sidong; Zhang, Zhuhua; Gong, Yongji; Jin, Zehua; Zhou, Wu; Yang, Yingchao; Zhang, Yuan; Wang, Xifan; Yakobson, Boris; Vajtai, Robert; Halas, Naomi J; Li, Bo; Xie, Erqing; Ajayan, Pulickel

    2016-07-01

    A new concept for junction fabrication by connecting multiple regions with varying layer thicknesses, based on the thickness dependence, is demonstrated. This type of junction is only possible in super-thin-layered 2D materials, and exhibits similar characteristics as p-n junctions. Rectification and photovoltaic effects are observed in chemically homogeneous MoSe2 junctions between domains of different thicknesses. PMID:27136275

  15. 2dF mechanical engineering

    NASA Astrophysics Data System (ADS)

    Smith, Greg; Lankshear, Allan

    1998-07-01

    2dF is a multi-object instrument mounted at prime focus at the AAT capable of spectroscopic analysis of 400 objects in a single 2 degree field. It also prepares a second 2 degree 400 object field while the first field is being observed. At its heart is a high precision robotic positioner that places individual fiber end magnetic buttons on one of two field plates. The button gripper is carried on orthogonal gantries powered by linear synchronous motors and contains a TV camera which precisely locates backlit buttons to allow placement in user defined locations to 10 (mu) accuracy. Fiducial points on both plates can also be observed by the camera to allow repeated checks on positioning accuracy. Field plates rotate to follow apparent sky rotation. The spectrographs both analyze light from the 200 observing fibers each and back- illuminate the 400 fibers being re-positioned during the observing run. The 2dF fiber position and spectrograph system is a large and complex instrument located at the prime focus of the Anglo Australian Telescope. The mechanical design has departed somewhat from the earlier concepts of Gray et al, but still reflects the audacity of those first ideas. The positioner is capable of positioning 400 fibers on a field plate while another 400 fibers on another plate are observing at the focus of the telescope and feeding the twin spectrographs. When first proposed it must have seemed like ingenuity unfettered by caution. Yet now it works, and works wonderfully well. 2dF is a system which functions as the result of the combined and coordinated efforts of the astronomers, the mechanical designers and tradespeople, the electronic designers, the programmers, the support staff at the telescope, and the manufacturing subcontractors. The mechanical design of the 2dF positioner and spectrographs was carried out by the mechanical engineering staff of the AAO and the majority of the manufacture was carried out in the AAO workshops.

  16. Compact 2-D graphical representation of DNA

    NASA Astrophysics Data System (ADS)

    Randić, Milan; Vračko, Marjan; Zupan, Jure; Novič, Marjana

    2003-05-01

    We present a novel 2-D graphical representation for DNA sequences which has an important advantage over the existing graphical representations of DNA in being very compact. It is based on: (1) use of binary labels for the four nucleic acid bases, and (2) use of the 'worm' curve as template on which binary codes are placed. The approach is illustrated on DNA sequences of the first exon of human β-globin and gorilla β-globin.

  17. 2D materials: Graphene and others

    NASA Astrophysics Data System (ADS)

    Bansal, Suneev Anil; Singh, Amrinder Pal; Kumar, Suresh

    2016-05-01

    Present report reviews the recent advancements in new atomically thick 2D materials. Materials covered in this review are Graphene, Silicene, Germanene, Boron Nitride (BN) and Transition metal chalcogenides (TMC). These materials show extraordinary mechanical, electronic and optical properties which make them suitable candidates for future applications. Apart from unique properties, tune-ability of highly desirable properties of these materials is also an important area to be emphasized on.

  18. TACO (2D AND 3D). Taco

    SciTech Connect

    Mason, W.E.

    1983-03-01

    A set of finite element codes for the solution of nonlinear, two-dimensional (TACO2D) and three-dimensional (TACO3D) heat transfer problems. Performs linear and nonlinear analyses of both transient and steady state heat transfer problems. Has the capability to handle time or temperature dependent material properties. Materials may be either isotropic or orthotropic. A variety of time and temperature dependent boundary conditions and loadings are available including temperature, flux, convection, radiation, and internal heat generation.

  19. Modelling RF sources using 2-D PIC codes

    SciTech Connect

    Eppley, K.R.

    1993-03-01

    In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT`S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field (``port approximation``). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation.

  20. Modelling RF sources using 2-D PIC codes

    SciTech Connect

    Eppley, K.R.

    1993-03-01

    In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT'S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field ( port approximation''). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation.

  1. Role of defects in frictional properties of 2-D materials

    NASA Astrophysics Data System (ADS)

    Kavalur, Aditya; Kim, Woo Kyun

    Graphene and other 2-D materials have provided a promising prospect to improve the tribological properties of small length scale devices such as MEMS/NEMS due to their low friction coefficient and excellent wear resistance. Several recent research efforts have been devoted to unveiling the physical origin of the superior tribological properties of these 2-D materials from both experimental and theoretical standpoints, however, many of them still remain far from clearly understood. Recently, it was shown that lamellar materials do not conform to the predictions of the Prandtl-Tomlinson model due to additional friction mechanisms of delamination and visco-elastic ploughing. These mechanisms are critical as they explain the low and negative coefficients of friction observed in recent AFM experiments. However, thus far, most simulation and theoretical studies about these novel friction mechanisms have focused on only pristine graphene whereas real graphene sheets prepared by CVD and other conventional techniques possess various forms of defects such as vacancies and non-hexagonal rings. In this study we examine the role of these defects in frictional properties of 2-D materials in relation to delamination and visco-elastic ploughing.

  2. Tomosynthesis imaging with 2D scanning trajectories

    NASA Astrophysics Data System (ADS)

    Khare, Kedar; Claus, Bernhard E. H.; Eberhard, Jeffrey W.

    2011-03-01

    Tomosynthesis imaging in chest radiography provides volumetric information with the potential for improved diagnostic value when compared to the standard AP or LAT projections. In this paper we explore the image quality benefits of 2D scanning trajectories when coupled with advanced image reconstruction approaches. It is intuitively clear that 2D trajectories provide projection data that is more complete in terms of Radon space filling, when compared with conventional tomosynthesis using a linearly scanned source. Incorporating this additional information for obtaining improved image quality is, however, not a straightforward problem. The typical tomosynthesis reconstruction algorithms are based on direct inversion methods e.g. Filtered Backprojection (FBP) or iterative algorithms that are variants of the Algebraic Reconstruction Technique (ART). The FBP approach is fast and provides high frequency details in the image but at the same time introduces streaking artifacts degrading the image quality. The iterative methods can reduce the image artifacts by using image priors but suffer from a slow convergence rate, thereby producing images lacking high frequency details. In this paper we propose using a fast converging optimal gradient iterative scheme that has advantages of both the FBP and iterative methods in that it produces images with high frequency details while reducing the image artifacts. We show that using favorable 2D scanning trajectories along with the proposed reconstruction method has the advantage of providing improved depth information for structures such as the spine and potentially producing images with more isotropic resolution.

  3. Engineering light outcoupling in 2D materials.

    PubMed

    Lien, Der-Hsien; Kang, Jeong Seuk; Amani, Matin; Chen, Kevin; Tosun, Mahmut; Wang, Hsin-Ping; Roy, Tania; Eggleston, Michael S; Wu, Ming C; Dubey, Madan; Lee, Si-Chen; He, Jr-Hau; Javey, Ali

    2015-02-11

    When light is incident on 2D transition metal dichalcogenides (TMDCs), it engages in multiple reflections within underlying substrates, producing interferences that lead to enhancement or attenuation of the incoming and outgoing strength of light. Here, we report a simple method to engineer the light outcoupling in semiconducting TMDCs by modulating their dielectric surroundings. We show that by modulating the thicknesses of underlying substrates and capping layers, the interference caused by substrate can significantly enhance the light absorption and emission of WSe2, resulting in a ∼11 times increase in Raman signal and a ∼30 times increase in the photoluminescence (PL) intensity of WSe2. On the basis of the interference model, we also propose a strategy to control the photonic and optoelectronic properties of thin-layer WSe2. This work demonstrates the utilization of outcoupling engineering in 2D materials and offers a new route toward the realization of novel optoelectronic devices, such as 2D LEDs and solar cells. PMID:25602462

  4. Breakdown of wave diffusion in 2D due to loops.

    PubMed

    Haney, Matthew; Snieder, Roel

    2003-08-29

    The validity of the diffusion approximation for the intensity of multiply scattered waves is tested with numerical simulations in a strongly scattering 2D medium of finite extent. We show that the diffusion equation underestimates the intensity and attribute this to both the neglect of recurrent scattering paths and interference within diffusion theory. We present a theory to quantify this discrepancy based on counting all possible scattering paths between point scatterers. Interference phenomena, due to loop paths, are incorporated in a way similar to coherent backscattering. PMID:14525183

  5. A parallel splitting wavelet method for 2D conservation laws

    NASA Astrophysics Data System (ADS)

    Schmidt, Alex A.; Kozakevicius, Alice J.; Jakobsson, Stefan

    2016-06-01

    The current work presents a parallel formulation using the MPI protocol for an adaptive high order finite difference scheme to solve 2D conservation laws. Adaptivity is achieved at each time iteration by the application of an interpolating wavelet transform in each space dimension. High order approximations for the numerical fluxes are computed by ENO and WENO schemes. Since time evolution is made by a TVD Runge-Kutta space splitting scheme, the problem is naturally suitable for parallelization. Numerical simulations and speedup results are presented for Euler equations in gas dynamics problems.

  6. New perspective on matter coupling in 2D quantum gravity

    NASA Astrophysics Data System (ADS)

    Ambjørn, J.; Anagnostopoulos, K. N.; Loll, R.

    1999-11-01

    We provide compelling evidence that a previously introduced model of nonperturbative 2D Lorentzian quantum gravity exhibits (two-dimensional) flat-space behavior when coupled to Ising spins. The evidence comes from both a high-temperature expansion and from Monte Carlo simulations of the combined gravity-matter system. This weak-coupling behavior lends further support to the conclusion that the Lorentzian model is a genuine alternative to Liouville quantum gravity in two dimensions, with a different and much ``smoother'' critical behavior.

  7. The quantum spacetime of c > 0 2 d gravity

    NASA Astrophysics Data System (ADS)

    Ambjørn, J.; Anagnostopoulos, K. N.; Thorleifsson, G.

    1998-04-01

    We review recent developments in the understanding of the fractal properties of quantum spacetime of 2d gravity coupled to c > 0 conformal matter. In particular we discuss bounds put by numerical simulations using dynamical triangulations on the value of the Hausdorff dimension dH obtained from scaling properties of two point functions defined in terms of geodesic distance. Further insight to the fractal structure of spacetime is obtained from the study of the loop length distribution function which reveals that the 0 < c ≤ 1 system has similar geometric properties with pure gravity, whereas the branched polymer structure becomes clear for c ≥ 5.

  8. Structure–Activity Relationship Studies and in Vivo Activity of Guanidine-Based Sphingosine Kinase Inhibitors: Discovery of SphK1- and SphK2-Selective Inhibitors

    PubMed Central

    Kharel, Yugesh; Raje, Mithun R.; Gao, Ming; Tomsig, Jose L.; Lynch, Kevin R.; Santos, Webster L.

    2015-01-01

    Sphingosine 1-phosphate (S1P) is a pleiotropic signaling molecule that acts as a ligand for five G-protein coupled receptors (S1P1–5) whose downstream effects are implicated in a variety of important pathologies including sickle cell disease, cancer, inflammation, and fibrosis. The synthesis of S1P is catalyzed by sphingosine kinase (SphK) isoforms 1 and 2, and hence, inhibitors of this phosphorylation step are pivotal in understanding the physiological functions of SphKs. To date, SphK1 and 2 inhibitors with the potency, selectivity, and in vivo stability necessary to determine the potential of these kinases as therapeutic targets are lacking. Herein, we report the design, synthesis, and structure–activity relationship studies of guanidine-based SphK inhibitors bearing an oxadiazole ring in the scaffold. Our studies demonstrate that SLP120701, a SphK2-selective inhibitor (Ki = 1 μM), decreases S1P levels in histiocytic lymphoma (U937) cells. Surprisingly, homologation with a single methylene unit between the oxadiazole and heterocyclic ring afforded a SphK1-selective inhibitor in SLP7111228 (Ki = 48 nM), which also decreased S1P levels in cultured U937 cells. In vivo application of both compounds, however, resulted in contrasting effect in circulating levels of S1P. Administration of SLP7111228 depressed blood S1P levels while SLP120701 increased levels of S1P. Taken together, these compounds provide an in vivo chemical toolkit to interrogate the effect of increasing or decreasing S1P levels and whether such a maneuver can have implications in disease states. PMID:25643074

  9. Shrimp Serine Proteinase Homologues PmMasSPH-1 and -2 Play a Role in the Activation of the Prophenoloxidase System

    PubMed Central

    Jearaphunt, Miti; Amparyup, Piti; Sangsuriya, Pakkakul; Charoensapsri, Walaiporn; Senapin, Saengchan; Tassanakajon, Anchalee

    2015-01-01

    Melanization mediated by the prophenoloxidase (proPO) activating system is a rapid immune response used by invertebrates against intruding pathogens. Several masquerade-like and serine proteinase homologues (SPHs) have been demonstrated to play an essential role in proPO activation in insects and crustaceans. In a previous study, we characterized the masquerade-like SPH, PmMasSPH1, in the black tiger shrimp Penaeus monodon as a multifunctional immune protein based on its recognition and antimicrobial activity against the Gram-negative bacteria Vibrio harveyi. In the present study, we identify a novel SPH, known as PmMasSPH2, composed of an N-terminal clip domain and a C-terminal SP-like domain that share high similarity to those of other insect and crustacean SPHs. We demonstrate that gene silencing of PmMasSPH1 and PmMasSPH2 significantly reduces PO activity, resulting in a high number of V. harveyi in the hemolymph. Interestingly, knockdown of PmMasSPH1 suppressed not only its gene transcript but also other immune-related genes in the proPO system (e.g., PmPPAE2) and antimicrobial peptides (e.g., PenmonPEN3, PenmonPEN5, crustinPm1 and Crus-likePm). The PmMasSPH1 and PmMasSPH2 also show binding activity to peptidoglycan (PGN) of Gram-positive bacteria. Using a yeast two-hybrid analysis and co-immunoprecipitation, we demonstrate that PmMasSPH1 specifically interacted with the final proteinase of the proPO cascade, PmPPAE2. Furthermore, the presence of both PmMasSPH1 and PmPPAE2 enhances PGN-induced PO activity in vitro. Taken together, these results suggest the importance of PmMasSPHs in the activation of the shrimp proPO system. PMID:25803442

  10. 2D superconductivity by ionic gating

    NASA Astrophysics Data System (ADS)

    Iwasa, Yoshi

    2D superconductivity is attracting a renewed interest due to the discoveries of new highly crystalline 2D superconductors in the past decade. Superconductivity at the oxide interfaces triggered by LaAlO3/SrTiO3 has become one of the promising routes for creation of new 2D superconductors. Also, the MBE grown metallic monolayers including FeSe are also offering a new platform of 2D superconductors. In the last two years, there appear a variety of monolayer/bilayer superconductors fabricated by CVD or mechanical exfoliation. Among these, electric field induced superconductivity by electric double layer transistor (EDLT) is a unique platform of 2D superconductivity, because of its ability of high density charge accumulation, and also because of the versatility in terms of materials, stemming from oxides to organics and layered chalcogenides. In this presentation, the following issues of electric filed induced superconductivity will be addressed; (1) Tunable carrier density, (2) Weak pinning, (3) Absence of inversion symmetry. (1) Since the sheet carrier density is quasi-continuously tunable from 0 to the order of 1014 cm-2, one is able to establish an electronic phase diagram of superconductivity, which will be compared with that of bulk superconductors. (2) The thickness of superconductivity can be estimated as 2 - 10 nm, dependent on materials, and is much smaller than the in-plane coherence length. Such a thin but low resistance at normal state results in extremely weak pinning beyond the dirty Boson model in the amorphous metallic films. (3) Due to the electric filed, the inversion symmetry is inherently broken in EDLT. This feature appears in the enhancement of Pauli limit of the upper critical field for the in-plane magnetic fields. In transition metal dichalcogenide with a substantial spin-orbit interactions, we were able to confirm the stabilization of Cooper pair due to its spin-valley locking. This work has been supported by Grant-in-Aid for Specially

  11. GBL-2D Version 1.0: a 2D geometry boolean library.

    SciTech Connect

    McBride, Cory L. (Elemental Technologies, American Fort, UT); Schmidt, Rodney Cannon; Yarberry, Victor R.; Meyers, Ray J.

    2006-11-01

    This report describes version 1.0 of GBL-2D, a geometric Boolean library for 2D objects. The library is written in C++ and consists of a set of classes and routines. The classes primarily represent geometric data and relationships. Classes are provided for 2D points, lines, arcs, edge uses, loops, surfaces and mask sets. The routines contain algorithms for geometric Boolean operations and utility functions. Routines are provided that incorporate the Boolean operations: Union(OR), XOR, Intersection and Difference. A variety of additional analytical geometry routines and routines for importing and exporting the data in various file formats are also provided. The GBL-2D library was originally developed as a geometric modeling engine for use with a separate software tool, called SummitView [1], that manipulates the 2D mask sets created by designers of Micro-Electro-Mechanical Systems (MEMS). However, many other practical applications for this type of software can be envisioned because the need to perform 2D Boolean operations can arise in many contexts.

  12. SUNY SPH

    EPA Science Inventory

    Some preliminary asthma prevalence data has been obtained regarding the St. Regis Mohawk Tribe, a Native American nation located here in New York State, indicating a rise in the prevalence of asthma in this population over the past decade, similar to the nation at large. This mo...

  13. A simple procedure to improve the pressure evaluation in hydrodynamic context using the SPH

    NASA Astrophysics Data System (ADS)

    Molteni, Diego; Colagrossi, Andrea

    2009-06-01

    In literature, it is well know that the Smoothed Particle Hydrodynamics method can be affected by numerical noise on the pressure field when dealing with liquids. This can be highly dangerous when an SPH code is dynamically coupled with a structural solver. In this work a simple procedure is proposed to improve the computation of the pressure distribution in the dynamics of liquids. Such a procedure is based on the use of a density diffusion term in the equation for the mass conservation. This diffusion is a pure numerical effect, similar to the well known artificial viscosity originally proposed in SPH method to smooth out the shock discontinuities. As the artificial viscosity, the density diffusion used here goes to zero increasing the number of particles recovering consistency and convergence of the final numerical scheme adopted. Different artificial density diffusion formulas have been studied, paying attention to prevent unphysical changes of the flows. To show the improvements of the new scheme proposed here, a suitable set of examples, for which reference solutions or experimental data are available, has been tested.

  14. Collocated approximations on unstructured grids: a comparison between General Finite Differences (GFD), Moving Least Squares (MLS), and Smoothed Particle Hydrodynamics (SPH)

    NASA Astrophysics Data System (ADS)

    Vasyliv, Yaroslav; Alexeev, Alexander

    2015-11-01

    In the meshfree family of methods, partial differential equations are solved on unstructured grids where a search radius establishes an implicit nodal connectivity used to determine whether to include or exclude neighboring nodes in the constructed approximation. Smoothed Particle Hydrodynamics (SPH) is widely attributed to be the eldest of the meshfree methods dating back to an astrophysics paper published in 1977 by Gingold and Monaghan. However, beating them by five years was Jensen when he published Finite Differences for Arbitrary Grids (FIDAG) in 1972. Ultimately this work and others were generalized by Liszka and Orkisz in 1979 as a weighted least squares formulation solving for the Taylor coefficients and is now commonly known as General Finite Differences (GFD). Shortly after in 1981, Lancaster and Salkauskas introduced the Moving Least Squares (MLS) approximation for surface reconstruction using a weighted least squares formulation where the unknown coefficients are treated as functions varying from node to node in the support domain. Here we examine important differences, similarities and limitations of each method by solving the 2D Poisson equation on unstructured grids. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1148903.

  15. Interparticle Attraction in 2D Complex Plasmas

    NASA Astrophysics Data System (ADS)

    Kompaneets, Roman; Morfill, Gregor E.; Ivlev, Alexei V.

    2016-03-01

    Complex (dusty) plasmas allow experimental studies of various physical processes occurring in classical liquids and solids by directly observing individual microparticles. A major problem is that the interaction between microparticles is generally not molecularlike. In this Letter, we propose how to achieve a molecularlike interaction potential in laboratory 2D complex plasmas. We argue that this principal aim can be achieved by using relatively small microparticles and properly adjusting discharge parameters. If experimentally confirmed, this will make it possible to employ complex plasmas as a model system with an interaction potential resembling that of conventional liquids.

  16. ENERGY LANDSCAPE OF 2D FLUID FORMS

    SciTech Connect

    Y. JIANG; ET AL

    2000-04-01

    The equilibrium states of 2D non-coarsening fluid foams, which consist of bubbles with fixed areas, correspond to local minima of the total perimeter. (1) The authors find an approximate value of the global minimum, and determine directly from an image how far a foam is from its ground state. (2) For (small) area disorder, small bubbles tend to sort inwards and large bubbles outwards. (3) Topological charges of the same sign repel while charges of opposite sign attract. (4) They discuss boundary conditions and the uniqueness of the pattern for fixed topology.

  17. A scalable 2-D parallel sparse solver

    SciTech Connect

    Kothari, S.C.; Mitra, S.

    1995-12-01

    Scalability beyond a small number of processors, typically 32 or less, is known to be a problem for existing parallel general sparse (PGS) direct solvers. This paper presents a parallel general sparse PGS direct solver for general sparse linear systems on distributed memory machines. The algorithm is based on the well-known sequential sparse algorithm Y12M. To achieve efficient parallelization, a 2-D scattered decomposition of the sparse matrix is used. The proposed algorithm is more scalable than existing parallel sparse direct solvers. Its scalability is evaluated on a 256 processor nCUBE2s machine using Boeing/Harwell benchmark matrices.

  18. 2D stepping drive for hyperspectral systems

    NASA Astrophysics Data System (ADS)

    Endrödy, Csaba; Mehner, Hannes; Grewe, Adrian; Sinzinger, Stefan; Hoffmann, Martin

    2015-07-01

    We present the design, fabrication and characterization of a compact 2D stepping microdrive for pinhole array positioning. The miniaturized solution enables a highly integrated compact hyperspectral imaging system. Based on the geometry of the pinhole array, an inch-worm drive with electrostatic actuators was designed resulting in a compact (1 cm2) positioning system featuring a step size of about 15 µm in a 170 µm displacement range. The high payload (20 mg) as required for the pinhole array and the compact system design exceed the known electrostatic inch-worm-based microdrives.

  19. HEXAGONAL ARRAY STRUCTURE FOR 2D NDE APPLICATIONS

    SciTech Connect

    Dziewierz, J.; Ramadas, S. N.; Gachagan, A.; O'Leary, R. L.

    2010-02-22

    This paper describes a combination of simulation and experimentation to evaluate the advantages offered by utilizing a hexagonal shaped array element in a 2D NDE array structure. The active material is a 1-3 connectivity piezoelectric composite structure incorporating triangular shaped pillars--each hexagonal array element comprising six triangular pillars. A combination of PZFlex, COMSOL and Matlab has been used to simulate the behavior of this device microstructure, for operation around 2.25 MHz, with unimodal behavior and low levels of mechanical cross-coupling predicted. Furthermore, the application of hexagonal array elements enables the array aperture to increase by approximately 30%, compared to a conventional orthogonal array matrix and hence will provide enhanced volumetric coverage and SNR. Prototype array configurations demonstrate good corroboration of the theoretically predicted mechanical cross-coupling between adjacent array elements (approx23 dB).

  20. Microwave Assisted 2D Materials Exfoliation

    NASA Astrophysics Data System (ADS)

    Wang, Yanbin

    Two-dimensional materials have emerged as extremely important materials with applications ranging from energy and environmental science to electronics and biology. Here we report our discovery of a universal, ultrafast, green, solvo-thermal technology for producing excellent-quality, few-layered nanosheets in liquid phase from well-known 2D materials such as such hexagonal boron nitride (h-BN), graphite, and MoS2. We start by mixing the uniform bulk-layered material with a common organic solvent that matches its surface energy to reduce the van der Waals attractive interactions between the layers; next, the solutions are heated in a commercial microwave oven to overcome the energy barrier between bulk and few-layers states. We discovered the minutes-long rapid exfoliation process is highly temperature dependent, which requires precise thermal management to obtain high-quality inks. We hypothesize a possible mechanism of this proposed solvo-thermal process; our theory confirms the basis of this novel technique for exfoliation of high-quality, layered 2D materials by using an as yet unknown role of the solvent.

  1. Photocurrent spectroscopy of 2D materials

    NASA Astrophysics Data System (ADS)

    Cobden, David

    Confocal photocurrent measurements provide a powerful means of studying many aspects of the optoelectronic and electrical properties of a 2D device or material. At a diffraction-limited point they can provide a detailed absorption spectrum, and they can probe local symmetry, ultrafast relaxation rates and processes, electron-electron interaction strengths, and transport coefficients. We illustrate this with several examples, once being the photo-Nernst effect. In gapless 2D materials, such as graphene, in a perpendicular magnetic field a photocurrent antisymmetric in the field is generated near to the free edges, with opposite sign at opposite edges. Its origin is the transverse thermoelectric current associated with the laser-induced electron temperature gradient. This effect provides an unambiguous demonstration of the Shockley-Ramo nature of long-range photocurrent generation in gapless materials. It also provides a means of investigating quasiparticle properties. For example, in the case of graphene on hBN, it can be used to probe the Lifshitz transition that occurs due to the minibands formed by the Moire superlattice. We also observe and discuss photocurrent generated in other semimetallic (WTe2) and semiconducting (WSe2) monolayers. Work supported by DoE BES and NSF EFRI grants.

  2. Multienzyme Inkjet Printed 2D Arrays.

    PubMed

    Gdor, Efrat; Shemesh, Shay; Magdassi, Shlomo; Mandler, Daniel

    2015-08-19

    The use of printing to produce 2D arrays is well established, and should be relatively facile to adapt for the purpose of printing biomaterials; however, very few studies have been published using enzyme solutions as inks. Among the printing technologies, inkjet printing is highly suitable for printing biomaterials and specifically enzymes, as it offers many advantages. Formulation of the inkjet inks is relatively simple and can be adjusted to a variety of biomaterials, while providing nonharmful environment to the enzymes. Here we demonstrate the applicability of inkjet printing for patterning multiple enzymes in a predefined array in a very straightforward, noncontact method. Specifically, various arrays of the enzymes glucose oxidase (GOx), invertase (INV) and horseradish peroxidase (HP) were printed on aminated