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Sample records for 45-25 kyr bp

  1. High temporal Resolution Fire History in Eastern Africa: the Last 16 kyr cal. BP

    NASA Astrophysics Data System (ADS)

    Vanniere, B.; Carcaillet, C.; Garcin, Y.; Vullien, A.; Williamson, D.

    2004-12-01

    Charcoal series, based on a high temporal resolution analysis, at Lake Massoko (9°20' S, 33° 45' E, 770 a.s.l., SW Tanzania) reveals numerous changes of fire regime over the last 16 kyr cal BP. Data are based on the tallying of charcoal from 700 continuous 1 cm thick samples along a 7m long sequence. The structure of charcoal particles is well preserved with an length:width ratio superior to 5; this appears to testify to the local provenance of the material studied and to the rapid transport of particles to the lake. The majority of particles belongs to herbaceous cuticles produced by savanna or bush fires. Time control is supported by 14 radiocarbon dates. Mean time resolution per sample of 17 yr provides the first long detailed biomass burning record in Africa. This record evidences frequent fires events during the last 16 kyr, indicating that fire is a key component of east African ecosystems since, at least, the last glacial stage up to present. From 16 to 12 kyr cal BP, the charcoal influx into the lake is low except during two specific sequences, between 13.5-12.5 kyr cal BP and 14.5-14 kyr cal BP. These may correspond to more arid or more biomass-available phases. Around 10 kyr cal BP, at the early Holocene a greater influx of charcoal is recorded in the lake, probably as a result of a high fire regime likely triggered by severe droughts. Between 8.3 and 1.7 kyr cal BP, the charcoal influx displays a cyclic fire history of ca. 500 yr. Low fire regime, between 3.5-2.5, 5.5-5 and 7.5-7 kyr cal BP, correspond to wetter periods. About 12 sequences of fire increase and decrease are highlighted, which appears to support a high climatic variability during the middle-Holocene. After 1.7 kyr BP, there is a long lasting increase of charcoal influx into the lake, as observed by black carbon analysis (Thevenon et al., 2003). This particular period, without analog since 16 kyr cal BP, is consistent with the development of Iron Age settlements in the region, slash

  2. δ13Catm and [CO2] measurements in Antarctic ice cores, 160 kyrBP - present

    NASA Astrophysics Data System (ADS)

    Eggleston, Sarah; Schmitt, Jochen; Schneider, Robert; Joos, Fortunat; Fischer, Hubertus

    2014-05-01

    Measurements from Antarctic ice cores allow us to reconstruct atmospheric concentrations of climatically important gases including CO2 over the past 800 kyr. Such measurements show that [CO2] has varied in parallel with Antarctic temperatures on glacial-interglacial timescales. Knowledge of the variations of the stable carbon isotope of CO2, δ13Catm, can help us better understand the processes involved in these fluctuations. Here, we present a first complete δ13Catmrecord extending from 160 kyrBP to the present accompanied by δ15N2 measurements during Marine Isotope Stage 3 (MIS 3, 57 - 29 kyrBP). The present record, measured primarily on ice from the EPICA Dome C and Talos Dome ice cores, has an average resolution of 500 yr, focused mainly on the Last Glacial Maximum and termination (180 yr; Schmitt et al., 2012), MIS 3 (660 yr), and Termination II through MIS 5.4 (590 yr; Schneider et al., 2013). Throughout the record, δ13Catm varies between approximately -6.8 and -6.4‰Following a period of relatively constant δ13Catm at the end of MIS 6 (around -6.8), the boundaries of MIS 5 correspond roughly with the beginning and end of a gradual enrichment in this isotope. In comparison, the more recent record depicts three more abrupt excursions to lighter values around 63 - 59, 46, and 17 kyrBP, in each case followed by a slower return (0.4o over the course of 5 - 15 kyr) to more enriched isotopic values. These coincide with Heinrich events 6, 5, and 1, respectively. No direct correlation is observed between the concentration and carbon isotope of CO2 over the last 160 kyr. The data indicate rather that numerous processes, such as uptake and release of atmospheric CO2 by the ocean and land biosphere, perhaps influenced by regions of growing permafrost during MIS 3 and 4, acting on a variety of timescales must be considered in explaining the evolution of δ13Catm on glacial-interglacial timescales. References: Schmitt, J. et al. Science 336, 711-714 (2012) Schneider

  3. Constraint on the penultimate glacial maximum Northern Hemisphere ice topography (≈140 kyrs BP)

    NASA Astrophysics Data System (ADS)

    Colleoni, Florence; Wekerle, Claudia; Näslund, Jens-Ove; Brandefelt, Jenny; Masina, Simona

    2016-04-01

    The penultimate glacial maximum (PGM, ≈140 kyrs BP), is known to be the most extensive glaciation on record that occurred during the last 400 kyrs over Eurasia. We used a coupled Atmosphere-Ocean-Sea-Ice-Land model to simulate the climate of the PGM accounting for a reconstruction of the large PGM Eurasian ice sheet. Due to uncertainties in the PGM Laurentide ice-sheet topography, two simulations with different ice-sheet topographies over North America (large as for the Last Glacial Maximum, LGM and small as for 13 kyrs BP) are performed. Results show that the simulated PGM glacial maximum climates are of comparable magnitude with previous simulations of the LGM in both cases. Assuming a small Laurentide ice-sheet instead of the LGM one in our PGM simulations results in a shift in the planetary waves. This causes an increase in storm track activity over the North Atlantic as well as higher temperatures and precipitation rates over North America, North Atlantic and over the Eurasian ice sheet. In addition, it induces a negative temperature anomaly over East Siberia yielding a thick snow cover, which seems to be in agreement with data from recent Arctic campaigns suggesting that an ice cap developed over Beringia during the PGM. All together, the changes in large-scale circulation and regional climate simulated using a small Laurentide ice sheet match the proxies well. Based on our findings, we suggest that the Laurentide ice sheet might have been smaller during the PGM than during the LGM, in turn also implying a larger Eurasian ice sheet than during the LGM, which is supported by various geological evidence of the PGM.

  4. Intercomparison of Simulated Global Vegetation Distributions in Response to 6 kyr BP Orbital Forcing.

    NASA Astrophysics Data System (ADS)

    Harrison, S. P.; Jolly, D.; Laarif, F.; Abe-Ouchi, A.; Dong, B.; Herterich, K.; Hewitt, C.; Joussaume, S.; Kutzbach, J. E.; Mitchell, J.; de Noblet, N.; Valdes, P.

    1998-11-01

    The response of ten atmospheric general circulation models to orbital forcing at 6 kyr BP has been investigated using the BIOME model, which predicts equilibrium vegetation distribution, as a diagnostic. Several common features emerge: (a) reduced tropical rain forest as a consequence of increased aridity in the equatorial zone, (b) expansion of moisture-demanding vegetation in the Old World subtropics as a consequence of the expansion of the Afro-Asian monsoon, (c) an increase in warm grass/shrub in the Northern Hemisphere continental interiors in response to warming and enhanced aridity, and (d) a northward shift in the tundra-forest boundary in response to a warmer growing season at high northern latitudes. These broadscale features are consistent from model to model, but there are differences in their expression at a regional scale. Vegetation changes associated with monsoon enhancement and high-latitude summer warming are consistent with palaeoenvironmental observations, but the simulated shifts in vegetation belts are too small in both cases. Vegetation changes due to warmer and more arid conditions in the midcontinents of the Northern Hemisphere are consistent with palaeoenvironmental data from North America, but data from Eurasia suggests conditions were wetter at 6 kyr BP than today. The models show quantitatively similar vegetation changes in the intertropical zone, and in the northern and southern extratropics. The small differences among models in the magnitude of the global vegetation response are not related to differences in global or zonal climate averages, but reflect differences in simulated regional features. Regional-scale analyses will therefore be necessary to identify the underlying causes of such differences among models.

  5. Response of the ocean, climate and terrestrial carbon cycle to Holocene freshwater discharge after 8 kyr BP

    NASA Astrophysics Data System (ADS)

    Wang, Yi; Mysak, Lawrence A.

    2005-08-01

    The ``green'' McGill Paleoclimate Model is run from 8 to 0 kyr BP under variable insolation (Milankovitch forcing), Taylor Dome CO2 (radiative forcing) and four prescribed meltwater scenarios (freshwater forcing) due to the retreat of the Laurentide Ice Sheet (LIS). For each scenario, we constrain the total volume of meltwater to be 1.62 × 1015 m3 (sea level-equivalent of 4.62 m), which is obtained from the work of Paterson (1972) and the reconstructed sea level increase between 8 and 6 kyr BP. During each freshwater perturbation, the simulated maximum Atlantic meridional overturning circulation (MOC) intensity is reduced, by amounts of up to 8 Sv. During the time of a weakened MOC, the sea surface temperature is reduced in the high-latitude North Atlantic and increased in the Southern Ocean. Our model results indicate that the freshwater impact on the Holocene climate and terrestrial carbon cycle is likely negligible after the 8.2-kyr cold event. Only a large freshwater perturbation (>0.1 Sv) has a significant impact on the Holocene climate and terrestrial carbon cycle; it results in an enhanced cooling of about 1°C in the Northern Hemisphere (NH) and notable drops in the global net primary productivity (2 PgC/yr) and total land carbon storage (40 PgC).

  6. Climate controls on savanna C3 and C4 expansion in Southern Africa during the last 36 kyr BP

    NASA Astrophysics Data System (ADS)

    Wang, Y. V.; Larsen, T.; Andersen, N.; Blanz, T.; Schneider, R. R.

    2010-12-01

    Savannahs contain a mixture of C3 and C4 vegetation, accounting for more than a quarter of global primary production and are the second most important biome on the continents. However, our understanding on how savannahs will respond to rising CO2 concentration and temperatures or the IPCC estimated decrease in rainfall is not yet clear in spite of potential far reaching socio-economic consequences. In this study, we used the δD and δ13C of sedimentary long-chain n-alkanes (n-C27,29,31,33 ) in concert with reconstructions for sea surface temperatures and fluvial discharge from a marine sediment core (GIK16160-3, 18°14.47’S, 37°52.27’W, 1334m water depth), collected near the Zambezi river mouth to examine savannah responses under different hydrological and climate conditions in Southern Africa during the last 36 kyr BP. Our data show large variability in both δD and δ13C records of the four n-alkanes, with isotopic differences between individual n-alkanes being far more pronounced during the Glacial than during the Deglacial and Holocene. These large differences may be explained by proportionally higher contributions of C4 grasses over C3 trees to the n-C33,31, which seems to be opposite for n-C29. A strong anticorrelation between δD and δ13C from 36 to 16 kyr BP for n-C31 (R2=0.55) and n-C33 (R2=0.70) suggests that δD of these n-alkanes is strongly influenced by changes in vegetation types as well as physiological effects, rather than being directly related to evaporation/ precipitation balance. In contrast, no apparent relationship (R2=0.32) exists between δD and δ13C of n-C29, suggesting that n-C29 is the most promising hydrological proxy due to less variable vegetation type contributions to n-C29 throughout the core. The C4 plant contribution, which was estimated by taking into account the four n-alkanes δ13C signals and their abundance, implies dominance of C4 grass between 36 and 20 kyr BP, and more evenly distributed C3 and C4 vegetation from

  7. Cosmic airburst debris, climate anomalies and societal reactions at 4.2kyr BP: from North Syria to Adelie Land

    NASA Astrophysics Data System (ADS)

    Coqueugniot, E.; Courty, M. M.

    2012-12-01

    The linkages established between dust spikes, unprecedented drought and societal disruption at 4.2 kyr BP have yet failed elucidating the marked increase in aerosol. The volcanic dust component or the erratic spatial pattern are among other puzzling anomalies for a global climate event. We examine here the 4.2 kyr BP debris records from high quality sedimentary archives across the two hemispheres: (1) at Tell Dja'de (Syria), a carbonaceous surface sealed by a EB III/IV Bronze age cemetery; (2) at Tell Ahmar (Syria), the nearly intact collapsed wood frame of the Akkad palace sandwiched between the last 3rd millennium BC plastered floors and massive destruction layers of the monumental buildings; (3) debris accumulation from human processed slags in late Akkaddian contexts at Tell Leilan, Tell Chuera, Tell Beydar, Tell Brak (North Syria) and in an EB III/IV one at Umbaschi (South Syria); (4) a tsunami layer at Banda Aceh (Sumatra); (5) deep sea cores from the Mediterranean and Caspian seas, the Indian and Austral oceans. Using an in situ multi-analytical protocol, we focus on the carbonaceous polymorphs and the composite elements that we formerly defined to tracing hypervelocity cosmic airbursts. A meticulous control of their spatial pattern and structural characteristics at meso to nano-scales has helped to distinguishing the intact debris fall of airburst origin from their human processed-byproducts. The later trace the occurrence in the debris airbursts of highly valuable resources, i.e. fossil combustible with singular properties, that have been exploited since the prehistoric time. Evidence for an oceanic impact at 4.2 kyr BP in the Austral ocean are provided by the 3 m record in the Adelie land high resolution marine core (MD03-2601) showing sudden discharge of ice rafted fine debris with impact features. Their fresh fingerprints in the high to low latitude records from the southern hemisphere indicate massive dispersion of impact debris by air and surface

  8. Impact of climate variability on terrestrial environment in Western Europe between 45 and 9 kyr cal. BP: vegetation dynamics recorded by the Bergsee Lake (Black Forest, Germany).

    NASA Astrophysics Data System (ADS)

    Duprat-Oualid, Fanny; Begeot, Carole; Rius, Damien; Millet, Laurent; Magny, Michel

    2016-04-01

    Between 9 and 45 kyr cal. BP, two great transitions lead the global climate system to evolve from the Last-Glacial period (115-14.7 kyr cal. BP), to two successive warmer periods, the Late-Glacial Interstadial (14.7-11.7 kyr cal. BP) and the Holocene (11.7-0 kyr cal. BP). δ18O variations recorded in Greenland ice cores (GRIP & NGRIP) revealed high frequency climate variability within the Last Glacial. These reference isotopic records highlighted a succession of centennial-to-millennial warm/cold events, the so-called Greenland Interstadials (GI) and Greenland Stadials (GS). The number continental records about the period 14.7-0 kyr cal. BP is substantial. This allowed to understand the vegetation dynamics in response to climate changes this period at the North-Atlantic scale. However, sequences covering the glacial period (beyond 20 kyr cal.BP) remain rare, because of hiatuses mostly due to local glaciers. Therefore, sedimentary continuous records of vegetation dynamics are still needed to better understand climate changes during the Last Glacial in Western Europe (Heiri et al. 2014). Here we present a new high-resolution pollen record from Lake Bergsee (47°34'20''N, 7°56'11''E, 382 m a.s.l). This lake is located south of Black Forest and north of the Alps, beyond the zone of glaciers maximal extension. Therefore it could have recorded the whole last climatic cycle, i.e. 120-0 kyr cal. BP. In 2013, a 29 m long core was extracted from the Bergsee. According to the depth-age model based on 14C AMS dating and the Laacher See Tephra (LST), the record spans continuously at least the last 45 kyrs. The first series of pollen analysis, focused on the 45-9 kyr cal. BP time window, allows us to reconstruct a precise, faithful and continuous vegetation history at the centennial scale. This high temporal resolution enabled to assess the response of vegetation to secular climate events (e.g. GI-4 = 200 yrs). First, our results show that vegetation responded to climate

  9. Multiproxy Records of Indo-Pacific Climate and Environmental Change from Lake Towuti, Indonesia, Since 60 Kyr BP

    NASA Astrophysics Data System (ADS)

    Russell, J. M.; Vogel, H.; Bijaksana, S.; Konecky, B. L.; Wicaksono, S. A.; Costa, K.; Wattrus, N. J.; Melles, M.

    2014-12-01

    Lake Towuti is a large tectonic lake in central Sulawesi, Indonesia that provides a unique opportunity to reconstruct climate and terrestrial environments in the heart of the Indo-Pacific warm pool. Long-term climate variations in this region are governed by a complex interplay between the Australasian monsoons and the ENSO system forced by changing insolation, sea level, ice sheets, and greenhouse gas concentrations. Existing reconstructions suggest heterogeneous responses of Indonesian climate to these forcings, highlighting the need for new long records of regional hydrology. We have developed multiproxy datasets from Lake Towuti and nearby lakes that provide continuous, detailed, and reproducible paleoenvironmental records spanning the past 60 kyr BP. Elemental tracers of terrestrial runoff and compound-specific stable isotope records of vegetation show that wet conditions and rainforest ecosystems persisted during Marine Isotope Stage 3 and the Holocene, and were interrupted by severe drying between 33 and 15 kyr BP when high-latitude ice sheets expanded and global temperatures cooled. This chronology of change implies that central Indonesian hydroclimate varies strongly in response to high-latitude climate forcing. New vegetation records from nearby lakes confirm these findings, but suggest the amplitude of glacial-interglacial changes in vegetation were weaker at high altitude, with important implications for the heterogeneity among Indonesian climate reconstructions. New lithologic and trace element records from Lake Towuti further document the significance of climate changes at the MIS3, 2, and 1 boundaries to Lake Towuti's paleolimnology, heat budget, and seasonal mixing. High-resolution seismic reflection data from Lake Towuti constrain the maximum depth of lake level lowstands during MIS2. Hydrological modeling suggests that precipitation was reduced by at least 50% at that time, an amplitude at or above the upper limits of precipitation changes

  10. Plant wax δD values record changing Eastern Mediterranean atmospheric circulation patterns during the 8.2 kyr B.P. climatic event

    NASA Astrophysics Data System (ADS)

    Schemmel, Fabian; Niedermeyer, Eva M.; Schwab, Valérie F.; Gleixner, Gerd; Pross, Jörg; Mulch, Andreas

    2016-02-01

    Throughout the Holocene, the climate of the Mediterranean region has been strongly influenced by variability in the atmospheric circulation of the high and low latitudes. A prominent example for such Holocene climate perturbations is the '8.2 kyr B.P. climatic event'. Reorganization of Northern Hemisphere atmospheric circulation patterns resulted in variations of temperature and precipitation distribution across the Mediterranean. The effects of changing high- and low-latitude atmospheric circulation on Mediterranean climate in relation to the 8.2 kyr B.P. climatic event are, however, not well understood. Here we present a high-resolution record of stable hydrogen isotope composition of plant-wax n-alkanes (δDwax) across the 8.2 kyr B.P. climatic event from the Tenaghi Philippon peat deposit (NE Greece) in order to characterize patterns of precipitation and changes in atmospheric circulation in the Eastern Mediterranean region. Our record reveals pronounced changes in δDwax that correlate closely with previously published palynological data. A long-term decline in δDwax values characterizes the lower part of the section. The 8.2 kyr B.P. climatic event itself is connected to two distinct positive δDwax excursions: a minor shift in δDwax around 8.2 kyr B.P. and a major shift in δDwax between ca. 8.1 and 8.0 kyr B.P.. The upper part of the section shows a progressive trend towards higher δDwax values. We link shifts in δDwax to changes in Mediterranean air mass trajectories supplying precipitation to NE Greece caused by variations in the relative contributions of northerly-derived, D-depleted moisture and southerly-derived, D-enriched moisture. Possible control mechanisms for alternating air mass trajectories include changes in the influence of the Siberian High and differences in the influence of the African and Asian monsoon circulation on anticyclonic conditions in the Mediterranean region as well as regional inflow of moist air masses from the Aegean Sea.

  11. Freshwater input into the Gulf of Mexico Prior to the 8.2 cal kyr BP Cool Event in Greenland Ice Core Records

    NASA Astrophysics Data System (ADS)

    Lodico, J. M.; Flower, B. P.; Quinn, T. M.

    2004-12-01

    The most prominent event recorded in Greenland ice core records over the past 10 calendar kiloyears before present (cal kyr BP) is an abrupt cooling at 8.2 cal kyr BP, which lasted for 300-400 yrs. It has been proposed that this climatic event was caused by a weakening of the thermohaline circulation in the North Atlantic forced by a vast outflow of freshwater through the Hudson Strait from glacial lakes Agassiz and Ojibway. Sediment core MD02-2550 from Orca Basin located in the northern Gulf of Mexico (GOM) provides an early Holocene record (10 to 7 cal kyr BP) of GOM climate changes, input from the Mississippi River system and adjacent continental areas. Paired analysis of Mg/Ca, a proxy of sea surface temperatures (SSTs), and \\delta18O on the planktonic foraminifera { \\it Globigerinoides ruber } (white variety; 250 -350 μ m) sampled at 0.5 cm (providing ˜20 year resolution), indicate a large isotopic excursion of ˜ -1 ‰ \\delta18O seawater from 8.5 to 8.4 cal kyr BP, coincident with the drainage of glacial lakes Agassiz and Ojibway at 8.47 cal kyr BP. We consider three possible sources for this freshwater pulse: freshwater input from glacial lakes, meltwater input from the drainage of the Laurentide Ice Sheet's final dome, and/or increased precipitation in North American drainage basins. Mg/Ca-SSTs show minimal mean change across the freshwater interval and an average of ˜28 ° C from 7 to 10 cal kyr BP, which is within the current mean SSTs for GOM ( ˜28 ° C). Mg/Ca-SST and \\delta18O seawater time series contain concentrations of variance near 500, 220, 146, and 60 years, significant at the 90 % confidence level, indicating possible sensitivity to solar variations. Ongoing faunal assemblage work will provide additional assessment for SST, sea surface salinity (SSS) and nutrient changes during the early Holocene in the GOM.

  12. A Coral Based Reconstruction of Atmospheric Δ14C through the Mystery Interval (17.5 to 14.5 kyr BP)

    NASA Astrophysics Data System (ADS)

    Mortlock, R. A.; Abdul, N. A.; Wright, J. D.; Fairbanks, R. G.; Cao, L.

    2011-12-01

    Reconstructions of atmospheric Δ14C from various archives (speleothems, planktic foraminifera, surface corals) record a ~ 190 per mil (%) decrease in Δ14C during the Mystery Interval (17.5 to 14.5 kyr BP). It has been suggested that the decrease results from the injection of 14C depleted waters during the deglacial. Supporting evidence comes from benthic forams in sediment cores off Baja, CA that record a 300% decrease in the 14C content of intermediate waters at the same time ice core records display an increase in atmospheric CO2. Records of opal burial in Southern Ocean sediments suggest increased upwelling (and release of 14C depleted CO2 to the atmosphere) during the Mystery Interval. We have updated our previously published record of atmospheric Δ14C with an additional 60-paired radiocarbon and U-series dated surface corals. A unique advantage to using the fossil coral archive is that both radiocarbon and calendar ages can be obtained from the same sample, whereas atmospheric 14C reconstructions generated from deep sea core microfossils require assigned calendar ages which are based on proxies correlated to ice cores and are subject to proxy interpretations, correlation errors, and uncertainties in ice core chronologies. Unfortunately small inaccuracies in the estimated calendar ages lead to large Δ14C errors. The updated coral record adds considerable coverage to both the Mystery Interval (previously constrained by coral data only at the boundaries in INTCAL04 and 09), and for the time period 26 to 18 kyr BP. Our record permits a better estimate as to the timing, duration, and magnitude of the decrease in Δ14C during the Mystery Interval. We observe a break in the declining 27 to 21 kyr BP trend of Δ14C at about 20 kyr BP. From 20 to 18.5 kyr BP Δ14C increases by about 100% to a maximum value of about 430%. Δ14C decreases to 300% by about 17 kyr BP at which time the long term declining trend in Δ14C is re-established and continues throughout the

  13. Bottom water variability in the subtropical northwestern Pacific from 26 kyr BP to present based on Mg / Ca and stable carbon and oxygen isotopes of benthic foraminifera

    NASA Astrophysics Data System (ADS)

    Kubota, Y.; Kimoto, K.; Itaki, T.; Yokoyama, Y.; Miyairi, Y.; Matsuzaki, H.

    2015-06-01

    To understand bottom water variability in the subtropical northwestern Pacific, bottom water temperatures (BWTs), carbon isotopes (δ13C), and oxygen isotopes of seawater (δ18Ow) at a water depth of 1166 m were reconstructed from 26 kyr BP to present. A new regional Mg / Ca calibration for the benthic foraminifera Cibicidoides wuellerstorfi (type B) was established to convert the benthic Mg / Ca value to BWT, based on 26 surface sediment samples and two core-top samples retrieved around Okinawa Island. During the Last Glacial Maximum (LGM), the δ18Ow in the intermediate water in the northwestern South Pacific was ~0.4‰ lower than in the deep South Pacific, indicating a greater vertical salinity gradient than at present. This salinity (and probably density) structure would have led to stratification in the intermediate and deep Pacific, which would, in turn, have greatly influenced carbon storage during the glacial time. The benthic Mg / Ca and δ18Ow records suggest changes that seem to follow Heinrich event 1 (H1) and the Bølling-Alleød (B/A) and Younger Dryas (YD) intervals, with BWT higher during H1 (~17 kyr BP) and YD (~12 kyr BP) and lower during B/A (~14 kyr BP). The warming in the bottom water during H1 suggests increased contribution of North Pacific Intermediate Water (NPIW) to the subtropical northwestern Pacific and decreased upwelling of cooler waters from the abyssal North Pacific. During the interval from 17 to 14.5 kyr BP, the BWT tended to decrease successively in association with a decrease in δ13C values, presumably as a result of increased upwelling of the abyssal waters to the intermediate depths of the North Pacific caused by shoaling and enhancement of the southward return flow of Pacific Deep Water (PDW). During the Holocene, the millennial- to sub-millennial-scale variations in the BWT generally correlate with the sea surface temperatures in the Okhotsk Sea, the source region of the NPIW, suggesting that changes in the BWT are linked

  14. Distal deltaic deposits document hydrological variability during the past 30 kyrBP in Lake Towuti, Indonesia

    NASA Astrophysics Data System (ADS)

    Vogel, Hendrik; Russell, James M.; Yudawati Cahyarini, Sri; Bijaksana, Satria; Wattrus, Nigel; Rethemeyer, Janet; Melles, Martin

    2014-05-01

    Lake Towuti (2.75°S, 121.5°E; 318 m a.s.l.) is a, 560 km2, 200-m deep tectonic lake at the downstream end of the Malili lake system, a set of five, ancient (1-2 MYr) tectonic lakes in central Sulawesi, Indonesia. The Mahalona River constitutes the largest tributary and connects Lake Towuti with the two upstream lakes Matano and Mahalona. The Mahalona River Delta is prograding into the >200m deep northern basin of Lake Towuti. Tracing past variability of Mahalona River discharge is therefore an important puzzle piece for the understanding of depositional dynamics in Lake Towuti as well as catchment hydrology and hydrological connectivity between the Malili Lakes. Distal deltaic deposits can help identifying past variability in river discharge and delta dynamics. Using highly resolved seismic reflection data collected between 2007-2013 we identified a stack of acoustically laminated reflections in Towuti's extensive and morphologically flat deep northern basin. For detailed characterization of these acoustic features we collected a c. 20m long piston core from the basin centre at 200 m water depth reaching back to c. 30 kyrBP. Sediments in this piston core consist to 75% of mass wasting deposits (MWD) of variable thickness that are intercalated with pelagic muds (25%). MWD appear mostly homogenous (silt- to finesand-sized siliciclastics with high amounts of terrestrial plant macrofossils) with only thin (1-3 cm) basal sand layers and clay caps (<1 cm). Pelagic muds appear as thin to medium bedded slightly silty clays that are clearly distinguishable from MWD. The position of MWD identified in our piston core nicely correlates with acoustically laminated reflections identified in seismic profiles crossing the coring site. Based on these combined sedimentological and acoustic datasets we interpret MWD in Towuti's northern basin as distal deltaic deposits originating from the Mahalona River Delta. Frequencies and percentages (in terms of lithofacies contribution) of

  15. Climate dynamics from 17 to 7 kyr BP deduced from a new pollen record from Tenaghi Philippon in comparison with marine palynological data from the northern Aegean Sea

    NASA Astrophysics Data System (ADS)

    Kotthoff, U.; Pross, J.; Müller, U. C.; Dormoy, I.; Peyron, O.; Bordon, A.; Schmiedl, G.

    2009-04-01

    The time interval from 17 to 7 kyr BP is characterized by pronounced climate variability. Among the climatic setbacks during that time, the most prominent are the Younger Dryas (YD) and the 8.2 ka event. The impact of these setbacks on vegetation development is relatively well understood for higher-latitude settings particularly in Central and SW Europe. However, there is still a lack of high-resolution vegetation and climate data for the eastern Mediterranean region, although this region is an ideal natural laboratory for analyzing the effects of short-term climatic change on terrestrial environments due to its intermediate position between the higher-latitude and lower-latitude climate systems. In light of the above, we used a terrestrial core from Tenaghi Philippon, NE Greece, to carry out pollen-based vegetation and climate reconstructions. These indicate that both temperature and precipitation controlled vegetation dynamics until ~15 kyr BP. Between ~15 and ~12.7 kyr BP, temperatures were already comparable to early Holocene circumstances, thus changes in moisture availability appear to have been of major importance. During the interstadials of the Bølling/Allerød interstadial complex (BAC), moisture availability appears higher at Tenaghi Phillipon than during the preceding interval. The following Younger Dryas, although drier and colder than the preceding interstadials of the BAC, appears more humid/warmer than the preceding cold intervals, i.e. the Older and Oldest Dryas and the Pleniglacial. These results are in opposite to findings from a neighbouring marine palynomorph record, where the YD appears to be the coldest/driest interval between 17 and 7 kyr BP, implied by both pollen- and dinocyst-based reconstructions. The early Holocene was punctuated by several short-term climate events. Among these, the North-Atlantic-related 8.2 ka event is most strongly pronounced at Tenaghi Philippon, with winter temperatures declining by almost 4° C, in opposite to

  16. Revision of Ernst Antevs' New England Varve Chronology: A Record of Meltwater Production and Southeastern LIS Recession: 18.2-12.5 kyr BP (Invited)

    NASA Astrophysics Data System (ADS)

    Ridge, J. C.

    2013-12-01

    New varve cores and 54 radiocarbon ages, have allowed the correction, closure of a gap, calibration, and expansion of Ernst Antevs' (1922) New England Varve Chronology from sediments of glacial Lake Hitchcock and it's successors in the Connecticut Valley of western New England (northeastern U.S.A.). The continuous 5659-yr chronology (18.2-12.5 kyr BP) has been renumbered as the North American Varve Chronology. Glacial varve thickness (18.2-13.7 kyr BP) documents abrupt changes in meltwater production related to varying ablation rate (summer climate) that is linked to ice sheet recession rates and advances, i.e. cold intervals are times of thin varves and slower ice recession or glacial readvances. To take advantage of the varve-climate relationship it is necessary to identify non-climatic events that can cause varve thickness to change. This includes sudden changes in lake level and flood events triggered by the abrupt drainage of tributary glacial lakes. A chronology of ice recession for intervals terminated by four stillstands and readvances of 1-2 century durations have been determined for the Connecticut Valley (from S to N): 50-100 m/yr in northern Connecticut to southern Massachusetts; Chicopee Readvance; 30-40 m/yr in central Mass.; Hatfield event; 80-90 m/yr from northern Mass. to central New Hampshire; North Charlestown end moraines; 300 m/yr to northern N.H.; Littleton Readvance; >300 m/yr to Quebec. Meltwater produced by ice recession of 300 m/yr modeled as a receding 1-bar ice sheet profile (from 100 km up ice near ELA to margin, valley width of 80 km, glacier flow rate of 200 m/yr at ELA) would be a minimum glacial meltwater discharge in the Connecticut Valley of ~90 x 109 m3/yr. This is ~10X the modern Conn. River discharge at Walpole, NH compressed almost entirely to the melt season. Non-glacial varves deposited after ice receded from the basin (13.7-12.5 kyr BP) also document climate change as a result of varve thickness varying with changes in

  17. Source to sink element geochemistry and clay mineralogy in Lake Towuti, Indonesia: understanding climate-induced controls on sediment composition during the past 60 kyr BP

    NASA Astrophysics Data System (ADS)

    Morlock, Marina; Vogel, Hendrik; Nigg, Valentin; Hasberg, Ascelina; Melles, Martin; Russell, James M.; Bijaksana, Satria

    2016-04-01

    Lake Towuti is a large (560 km2 surface area; 198 m max. water depth) ultraoligotrophic lake hosted in the East Sulawesi ophiolite, characterised by high iron and very low sulphur contents. The lake is surrounded by several 10s of metres thick deeply weathered laterite soils and closed-canopy rainforest. In May-July 2015, we recovered more than 1000 m of sediment core capturing the entire sediment infill to bedrock in the course of the ICDP Towuti Drilling Project. In the tropics very little is known about the influence of climatic changes on weathering and erosion on glacial-interglacial time-scales. It is expected that varying hydroclimatic conditions will lead to changes in the weathering and erosion rates and greatly influence terrestrial elemental cycling. The direction of change and more quantitative estimates of the rates of changes are, however, unknown. In order to characterise modern erosional processes and element cycling in the lake and its catchment, we collected catchment-characteristic bedrock samples and profiles of their overlying laterites, riverine sediments, and 85 samples of surface sediments from the lake. All samples were analysed for their geochemical and clay-mineralogical (<2 μm) composition in order to define the composition of erodible substrates, trace source-to-sink changes in sediment composition, and assess the spatial variability in Lake Towuti. The relationships found in the modern system were then applied to two sediment cores, dating back 30,000 and 60,000 years BP, respectively. The laterite soils in the catchment show a characteristic zonation with high concentrations of Al, Ti, Fe, and Cr in the uppermost horizon, while Mg is enriched in the saprolite zone directly above bedrock. Weathering intensity increases from bedrock (least weathered) across river bedload of the 15 inlets to the sediments in the deepest basin of the lake (most weathered). The largest inlet to Lake Towuti, the Mahalona River, supplies sediments with low

  18. Which 100-kyr Cycle?

    NASA Astrophysics Data System (ADS)

    Berger, A.; Loutre, M. F.; Mélice, J. L.

    The origin of all the fundamental frequencies characterising the long term variations of the astronomical parameters has been identified. This allows to discuss their inter- relationship and possible changes in times. Different sources for the so-called 100-kyr cycle have been found in the astronomical parameters and in the insolation itself. The most popular 100-kyr cycle is certainly the eccentricity one. Actually, the periods of the most important spectral components of e used in Berger (1978) are 412 885, 14 945, 123 297, 99 590 and 131 248 yr. Instability of the resulting average 100-kyr cy- cle has been shown related to the ~ 400-kyr cycle. The derivative of eccentricity is definitely showing a spectrum dominated by the 100-kyr cycle with the same spectral components as e itself. The inclination of the Earth orbital plane on the ecliptic does not display any 100-kyr cycle, but it is not the case for its inclination on the reference plane for which cycles of 98 046 and 107 478 years appear. Finally the frequency modulation of obliquity is characterised by cycles 171 kyr and 97 kyr long. For inso- lation, it is known that there is only a very weak signal around 100-kyr coming from e itself. However, if we consider the seasonal cycle at the equator, its amplitude varies with cycles of 400 kyr, 100 kyr, 41 kyr, 10 kyr and 5 kyr, all related to e. Although all these cycles are close to the 100 kyr cycle found in geological data, the origin of this kind of cycle can be best identified by comparing the proxy record to the re- sponse of the climate system to the astronomical forcing. This forcing signal which contains, in one way or another, the astronomical characteristics mentioned above is, at least, partly distorted and transformed, a modification which can only be estimated through climate models. Such a climate model has been developed in the early 80Ss in Louvain-la-Neuve and used since to simulate the last and next glacial-interglacial cycles.

  19. Late Holocene subalpine lake sediments record a multi-proxy shift to increased aridity at 3.65 kyr BP, following a millennial-scale neopluvial interval in the Lake Tahoe watershed and western Great Basin, USA

    NASA Astrophysics Data System (ADS)

    Noble, Paula; Zimmerman, Susan; Ball, Ian; Adams, Kenneth; Maloney, Jillian; Smith, Shane

    2016-04-01

    A mid Holocene dry period has been reported from lake records in the Great Basin and Sierra Nevada, yet the spatial and temporal extent of this interval is not well understood. We present evidence for a millennial-scale interval of high winter precipitation (neopluvial) at the end of the mid Holocene in the Lake Tahoe-Pyramid Lake watershed in the northern Sierra Nevada that reached its peak ˜3.7 kcal yr BP. A transect of 4 cores recovered from Fallen Leaf Lake in the Tahoe Basin were dated using AMS14C on plant macrofossils, and analyzed using scanning XRF, C and N elemental and stable isotope measurements, and diatoms as paleoclimate proxies. Fallen Leaf Lake is a deep glacially-derived lake situated in the Glen Alpine Valley at an elevation of 1942m, ˜45 m above the level of Lake Tahoe. In Fallen Leaf Lake, the end of the neopluvial is dated at 3.65 ± 0.09 kcal yr BP, and is the largest post-glacial signal in the cores. The neopluvial interval is interpreted to be a period of increased snowpack in the upper watershed, supported by depleted g δ13Corg (-27.5) values, negative baseline shifts in TOC and TN, lower C:N, and high abundances of Aulacoseira subarctica, a winter-early spring diatom. Collectively, these proxies indicate cooler temperatures, enhanced mixing, and/or shortened summer stratification resulting in increased algal productivity relative to terrestrial inputs. The neopluvial interval ends abruptly at 3.65 ka, with a change from mottled darker opaline clay to a homogeneous olive clay with decreased A. subarctica and opal, and followed by a 50% reduction in accumulation rates. After this transition δ13Corg becomes enriched by 2‰ and TOC, TN, and C:N all show the start of positive trends that continue through the Holocene. Pyramid Lake is an endorheic basin situated at the terminal end of the watershed, and inflow arrives from the Lake Tahoe basin via the Truckee River. At Pyramid Lake, existing ages on paleo-shorelines indicate a significant

  20. Bottom-Water Oxygenation in the Central Gulf of California for the Last 16 kyrs

    NASA Astrophysics Data System (ADS)

    Karlin, R. E.; Harris, A.

    2006-12-01

    Laminated sediment records from the central Gulf of California reveal changes in oxygen-related microfabric, which can be directly related to variations in the intensity and location of the oxygen-minimum zone (OMZ) for the last 16,000 years. The intensity and location of the OMZ depends on the interaction of primary productivity and bottom water oxygen availability created by compositional variations and replenishment speed of Pacific Intermediate Water (PIW). Seven cores recovered from water depths ranging from 525 to 820 meters directly sample changes in the extent of the OMZ and PIW. Chronologies for six Atlantis II cores are based on independent radiocarbon ages, stratigraphic correlation, oxygen-isotope stratigraphy, and lamina counts from x-radiograph images. At DSDP Site 480, the varve chronology, when compared to an independent age model based on radiocarbon ages and secular variation curves, indicates that the Site 480 record is continuous and has an age error comparable to that of ice core and tree ring records. Bottom-water oxygenation was relatively higher from 17 to ~15.5 cal kyrs BP and ~12.3 to ~11.9 cal kyrs BP, was lower from ~15.5 to ~12.3 cal kyrs BP and ~11.6 to 7 cal kyrs and began increasing again after 7 cal kyrs. Changes in microfabric and, hence, bottom water oxygenation were not synchronous in the central Gulf. The change from oxic to more anoxic conditions near the end of the last glacial and the Younger Dryas began at depth and progressively shallowed with time. The transition to more oxic conditions in the Younger Dryas also began at depth and shallowed with time. The relationships between proxies for PIW oxygenation, primary productivity, and sediment flux suggest that productivity controlled bottom-water oxygenation from 17 to 11.6 cal kyrs BP. Lower oxygen availability due to less PIW input appears to have controlled bottom-water oxygenation from 11.6 to ~10 cal kyrs BP. No clear basin-wide relationship is found between productivity

  1. 46 CFR 167.45-25 - Fire mains and hose connections.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 46 Shipping 7 2010-10-01 2010-10-01 false Fire mains and hose connections. 167.45-25 Section 167.45-25 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) NAUTICAL SCHOOLS PUBLIC NAUTICAL SCHOOL SHIPS Special Firefighting and Fire Prevention Requirements § 167.45-25 Fire mains and hose connections. All pipes used as mains...

  2. 43 CFR 45.25 - What will DOI do with any hearing requests?

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 43 Public Lands: Interior 1 2011-10-01 2011-10-01 false What will DOI do with any hearing requests? 45.25 Section 45.25 Public Lands: Interior Office of the Secretary of the Interior CONDITIONS AND PRESCRIPTIONS IN FERC HYDROPOWER LICENSES Hearing Process Initiation of Hearing Process § 45.25 What will DOI...

  3. 43 CFR 45.25 - What will DOI do with any hearing requests?

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 43 Public Lands: Interior 1 2013-10-01 2013-10-01 false What will DOI do with any hearing requests? 45.25 Section 45.25 Public Lands: Interior Office of the Secretary of the Interior CONDITIONS AND PRESCRIPTIONS IN FERC HYDROPOWER LICENSES Hearing Process Initiation of Hearing Process § 45.25 What will DOI...

  4. 43 CFR 45.25 - What will DOI do with any hearing requests?

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 43 Public Lands: Interior 1 2012-10-01 2011-10-01 true What will DOI do with any hearing requests? 45.25 Section 45.25 Public Lands: Interior Office of the Secretary of the Interior CONDITIONS AND PRESCRIPTIONS IN FERC HYDROPOWER LICENSES Hearing Process Initiation of Hearing Process § 45.25 What will DOI...

  5. 43 CFR 45.25 - What will DOI do with any hearing requests?

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 43 Public Lands: Interior 1 2014-10-01 2014-10-01 false What will DOI do with any hearing requests? 45.25 Section 45.25 Public Lands: Interior Office of the Secretary of the Interior CONDITIONS AND PRESCRIPTIONS IN FERC HYDROPOWER LICENSES Hearing Process Initiation of Hearing Process § 45.25 What will DOI...

  6. 14 CFR 45.25 - Location of marks on fixed-wing aircraft.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 14 Aeronautics and Space 1 2013-01-01 2013-01-01 false Location of marks on fixed-wing aircraft. 45.25 Section 45.25 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF... surfaces of a single vertical tail or on the outer surfaces of a multivertical tail. However, on...

  7. 14 CFR 45.25 - Location of marks on fixed-wing aircraft.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 14 Aeronautics and Space 1 2012-01-01 2012-01-01 false Location of marks on fixed-wing aircraft. 45.25 Section 45.25 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF... surfaces of a single vertical tail or on the outer surfaces of a multivertical tail. However, on...

  8. 14 CFR 45.25 - Location of marks on fixed-wing aircraft.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 14 Aeronautics and Space 1 2014-01-01 2014-01-01 false Location of marks on fixed-wing aircraft. 45.25 Section 45.25 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF... surfaces of a single vertical tail or on the outer surfaces of a multivertical tail. However, on...

  9. 14 CFR 45.25 - Location of marks on fixed-wing aircraft.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 14 Aeronautics and Space 1 2011-01-01 2011-01-01 false Location of marks on fixed-wing aircraft. 45.25 Section 45.25 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF... surfaces of a single vertical tail or on the outer surfaces of a multivertical tail. However, on...

  10. 14 CFR 45.25 - Location of marks on fixed-wing aircraft.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Location of marks on fixed-wing aircraft. 45.25 Section 45.25 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF... surfaces of a single vertical tail or on the outer surfaces of a multivertical tail. However, on...

  11. Modelling The Magnitude of Climatic Changes In East Africa During The Last 150 Kyr

    NASA Astrophysics Data System (ADS)

    Bergner, A. G. N.; Duehnforth, M.; Strecker, M. R.; Trauth, M. H.

    In order to assess the links between hydrology and climate in continental basins, water- balance modelling of lakes is a useful tool, because lakes are sensitive recorders of hydrologic fluctuations due to regional climate change. In the Central Kenya Rift, 40Ar/39Ar- dated lake sediments from the Naivasha and Nakuru-Elmenteita basins provide detailed information on extent and chronology of environmental changes and their effect on paleo-lakes. Mapping of lake deposits in surface outcrops and boreholes suggests that the extent of the lakes was comparable during highstands at 9 and 138 kyr BP, respectively, but significantly different compared to present conditions. Whereas the present Lake Naivasha (180 km2), Nakuru (40 km2) and Elmenteita (26 km2) have a water volume < 1 km3, paleo-lake areas were larger by factor of 3 to 4, and lake volumes increased by factor of 50 to 60. Simultaneously, these lakes were subject to considerable hydrochemical changes. For example, diatom and authigenic mineral assemblages indicate pH fluctuations between 7 and 11 for Lake Naivasha during the last 150 kyr, in contrast to a pH of 8.2. Hydroclimatic lake-balance modelling of the most prominent lake phases of Lake Naivasha and Lake Nakuru-Elmenteita were performed in order to compare past and present-day climate conditions. Our results show that a +15% increase in precipitation compared to modern values may have been responsible for a lake-level highstand at 9 kyr BP. In addition, the increase in precipitation may reach as much as +30% if a change in vegetation due to increased humidity in the catchment is taken into account. Preliminary modelling results for an earlier highstand of Lake Naivasha at 138 kyr BP suggests hydroclimatic conditions comparable to the Holocene highstand. From the analysis of lake sediments we infer that Lake Nakuru-Elmenteita also experienced significant lake highstands at 138 kyr BP most probably caused by the same wetter cli- mate conditions. Our

  12. Abrupt Climatic Events Observed in Organic-Rich Sediments From Lake Tanganyika, Tropical East Africa, Over the Past 50 kyr

    NASA Astrophysics Data System (ADS)

    Burnett, A. P.; Weyhenmeyer, C. E.; Scholz, C. A.; Swart, P. K.

    2006-12-01

    Abrupt climate changes such as Dansgaard-Oeschger Cycles and Heinrich Events were first detected in high- latitude records, but an increasing number of studies suggest that these rapid changes are actually global events. The degree to which the tropics drive, control and/or respond to such rapid changes is still poorly understood due to a scarcity of data from low-latitude regions. A recently acquired sediment core from Lake Tanganyika, East Africa, provides a unique archive to study abrupt climate events in the tropics throughout the last glaciation. The core provides a continuous, undisturbed and high resolution climate record over the past 100 kyr. An age-depth model based on 25 new radiocarbon dates provides a solid, high-resolution chronology for the past 50 kyr. Throughout this time, several rapid changes in paleoclimate proxy data are observed along the core. Sedimentation rates remained fairly constant from the Holocene until the Last Glacial Maximum (LGM) but increased abruptly from ~80 mm/1000 yr to ~150 mm/1000 yr around 18 kyr BP. At the same time, the sediment record reveals a sudden increase in total organic carbon (TOC) from 4% to 12% indicating a rapid increase in organic matter contributions at the end of the LGM. Abrupt changes in TOC and δ13C values are also found at ~38 kyr, ~30 kyr and ~16 kyr BP, suggesting a possible link to Heinrich events 4, 3 and 1, respectively. Forthcoming very high-resolution analyses, to augment existing low-resolution data, include δ13C, δ15N, C/N ratios and TOC values. Furthermore, TEX86 measurements will be carried out to determine whether the observed changes in organic matter contributions are associated with changes in water temperatures. In combination with the solid 14C chronology, the new data will allow us to precisely determine the onset, timing and nature of abrupt changes and evaluate them in the global context.

  13. 43 CFR 45.25 - What will DOI do with any hearing requests?

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 43 Public Lands: Interior 1 2010-10-01 2010-10-01 false What will DOI do with any hearing requests... PRESCRIPTIONS IN FERC HYDROPOWER LICENSES Hearing Process Initiation of Hearing Process § 45.25 What will DOI do... will refer the case for a hearing as follows: (1) If the hearing is to be conducted by DOI, OEPC...

  14. Terrestrial biosphere changes over the last 120 kyr

    NASA Astrophysics Data System (ADS)

    Hoogakker, B. A. A.; Smith, R. S.; Singarayer, J. S.; Marchant, R.; Prentice, I. C.; Allen, J. R. M.; Anderson, R. S.; Bhagwat, S. A.; Behling, H.; Borisova, O.; Bush, M.; Correa-Metrio, A.; de Vernal, A.; Finch, J. M.; Fréchette, B.; Lozano-Garcia, S.; Gosling, W. D.; Granoszewski, W.; Grimm, E. C.; Grüger, E.; Hanselman, J.; Harrison, S. P.; Hill, T. R.; Huntley, B.; Jiménez-Moreno, G.; Kershaw, P.; Ledru, M.-P.; Magri, D.; McKenzie, M.; Müller, U.; Nakagawa, T.; Novenko, E.; Penny, D.; Sadori, L.; Scott, L.; Stevenson, J.; Valdes, P. J.; Vandergoes, M.; Velichko, A.; Whitlock, C.; Tzedakis, C.

    2016-01-01

    A new global synthesis and biomization of long (> 40 kyr) pollen-data records is presented and used with simulations from the HadCM3 and FAMOUS climate models and the BIOME4 vegetation model to analyse the dynamics of the global terrestrial biosphere and carbon storage over the last glacial-interglacial cycle. Simulated biome distributions using BIOME4 driven by HadCM3 and FAMOUS at the global scale over time generally agree well with those inferred from pollen data. Global average areas of grassland and dry shrubland, desert, and tundra biomes show large-scale increases during the Last Glacial Maximum, between ca. 64 and 74 ka BP and cool substages of Marine Isotope Stage 5, at the expense of the tropical forest, warm-temperate forest, and temperate forest biomes. These changes are reflected in BIOME4 simulations of global net primary productivity, showing good agreement between the two models. Such changes are likely to affect terrestrial carbon storage, which in turn influences the stable carbon isotopic composition of seawater as terrestrial carbon is depleted in 13C.

  15. Sediment provenance and paleoenvironmental change in the Ulleung Basin of the East (Japan) Sea during the last 21 kyr

    NASA Astrophysics Data System (ADS)

    Xu, Zhaokai; Lim, Dhongil; Choi, Jinyong; Li, Tiegang; Wan, Shiming; Rho, Kyoungchan

    2014-10-01

    Despite the well-reconstructed paleoceanography of the late Quaternary deposits in the East (Japan) Sea (ES), provenances of terrigenous sediments and a comprehensive interpretation of their variations since the Last Glacial Maximum remain unclear, especially in regard to the mainland China- and Taiwan-derived matter. Grain size, conservative trace elements, rare earth elements (REEs), Nd isotope, and clay mineralogy of core sediments from the Ulleung Basin of the ES were investigated for better understanding of detrital sediment provenance and transport process and then their forcing mechanisms over the last 21 kyr. Geochemical-mineralogical multi-indices in this study showed notable three-phase changes in sediment provenance, which can be closely related to sea-level fluctuation, development of the Tsushima Warm Current as well as intermittent influence from the East Asian summer monsoon climate evolution. During Unit 1 (21.1-8.4 kyr BP) when the Tsushima Warm Current was absent in the ES, the paleo-Changjiang and the paleo-Huanghe mouth might be situated close to the study area and thus mainland China could have played major role in the southwestern Ulleung Basin sedimentation. In particular, the formation of rhythmic dark-colored alternation in Unit 1 is possibly attributable to the pulse of paleo-Huanghe discharge associated with centurial- to millennial-scale variability in the East Asian summer monsoon. In Unit 2 (8.4-7.2 kyr BP), these river mouths gradually retreated to their present positions with global sea-level rise, leading to decreasing terrigenous sediment supply from mainland China to the study area. Since 7.2 kyr BP (Unit 3), sedimentation in the Ulleung Basin should still be mainly derived from mainland China. Meanwhile, increasing chlorite/kaolinite ratio but decreasing εNd value revealed that terrigenous matter from Taiwan might have been limitedly transported northward to the study area by the fully evolved Tsushima Warm Current. A prominent

  16. Observation of 23 supernovae that exploded <300 pc from Earth during the past 300 kyr

    SciTech Connect

    Firestone, R. B.

    2014-07-01

    Four supernovae (SNe), exploding ≤300 pc from Earth, were recorded 44, 37, 32, and 22 kyr ago in the radiocarbon ({sup 14}C) record during the past 50 kyr. Each SN left a nearly identical signature in the record, beginning with an initial sudden increase in atmospheric radiocarbon, when the SN exploded, followed by a hiatus of 1500 yr, and concluding with a sustained 2000 yr increase in global radiocarbon due to γ-rays produced by diffusive shock in the SN remnant (SNR). For the past 18 kyr excess radiocarbon has decayed with the {sup 14}C half-life. SN22kyrBP, is identified as the Vela SN that exploded 250 ± 30 pc from Earth. These SN are confirmed in the {sup 10}Be, {sup 26}Al, {sup 36}Cl, and NO{sub 3}{sup −} geologic records. The rate of near-Earth SNe is consistent with the observed rate of historical SNe giving a galactic rate of 14 ± 3 kyr{sup –1} assuming the Chandra Galactic Catalog SNR distribution. The Earth has been used as a calorimeter to determine that ≈2 × 10{sup 49} erg were released as γ-rays at the time of each SN explosion and ≈10{sup 50} erg in γ-rays following each SN. The background rate of {sup 14}C production by cosmic rays has been determined as 1.61 atoms cm{sup –2} s{sup –1}. Approximately 1/3 of the cosmic ray energy produced by diffusive shock in the SNR was observed to be emitted as high-energy γ-rays. Analysis of the {sup 10}Be/{sup 9}Be ratio in marine sediment identified 19 additional near-Earth SNe that exploded 50-300 kyr ago. Comparison of the radiocarbon record with global temperature variations indicated that each SN explosion is correlated with a concurrent global warming of ≈3°C-4°C.

  17. 27 CFR 45.25 - Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes...

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ..., possession, or sale of tobacco products, or cigarette papers or tubes, after removal. 45.25 Section 45.25... TREASURY (CONTINUED) TOBACCO REMOVAL OF TOBACCO PRODUCTS AND CIGARETTE PAPERS AND TUBES, WITHOUT PAYMENT OF..., possession, or sale of tobacco products, or cigarette papers or tubes, after removal. Any person who,...

  18. 27 CFR 45.25 - Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes...

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ..., possession, or sale of tobacco products, or cigarette papers or tubes, after removal. 45.25 Section 45.25... TREASURY (CONTINUED) TOBACCO REMOVAL OF TOBACCO PRODUCTS AND CIGARETTE PAPERS AND TUBES, WITHOUT PAYMENT OF..., possession, or sale of tobacco products, or cigarette papers or tubes, after removal. Any person who,...

  19. 27 CFR 45.25 - Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes...

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ..., possession, or sale of tobacco products, or cigarette papers or tubes, after removal. 45.25 Section 45.25... TREASURY (CONTINUED) TOBACCO REMOVAL OF TOBACCO PRODUCTS AND CIGARETTE PAPERS AND TUBES, WITHOUT PAYMENT OF..., possession, or sale of tobacco products, or cigarette papers or tubes, after removal. Any person who,...

  20. 27 CFR 45.25 - Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes...

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 2 2014-04-01 2014-04-01 false Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes, after removal. 45.25 Section 45.25 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF...

  1. 27 CFR 45.25 - Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes...

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 2 2012-04-01 2011-04-01 true Unlawful purchase, receipt, possession, or sale of tobacco products, or cigarette papers or tubes, after removal. 45.25 Section 45.25 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF...

  2. The seismic-stratigraphic record of lake-level fluctuations in Lake Challa: Hydrological stability and change in equatorial East Africa over the last 140 kyr

    NASA Astrophysics Data System (ADS)

    Moernaut, J.; Verschuren, D.; Charlet, F.; Kristen, I.; Fagot, M.; De Batist, M.

    2010-02-01

    Seismic-reflection data from crater lake Challa (Mt. Kilimanjaro, equatorial East Africa) reveal a ˜ 210-m thick sedimentary infill containing distinct seismic-stratigraphic signatures of late-Quaternary lake-level fluctuations. Extrapolation of a well-constrained age model on the cored upper part of the sequence suggests that these lake-level fluctuations represent a detailed and continuous record of moisture-balance variation in equatorial East Africa over the last 140 kyr. This record indicates that the most severe aridity occurred during peak Penultimate glaciation immediately before ˜ 128 kyr BP (coeval with Heinrich event 11) and during a Last Interglacial 'megadrought' period between ˜ 114 and ˜ 97 kyr BP; in comparison, Last Glacial Maximum (LGM) aridity was modest. It was preceded by ˜ 75 000 years of relatively stable and moist climate conditions interrupted by eleven short-lived dry spells, five of which match the timing of Heinrich events 2 to 6. Climate history near the East African equator reflects variation in the precessional forcing of monsoon rainfall modulated by orbital eccentricity, but precession-driven moisture fluctuations were less extreme than those observed in northern and southern tropical Africa. The near-continuous moist climate from ˜ 97 to 20.5 kyr BP recorded in the Lake Challa record contrasts with the trend towards greater aridity after ˜ 70 kyr BP documented in equatorial West Africa. This long period of moist glacial climate and a short, relatively modest LGM drought can be attributed to greater independence of western Indian Ocean monsoon dynamics from northern high-latitude glaciation than those in the tropical Atlantic Ocean. This rather persistent moist glacial climate regime may have helped maintain high biodiversity in the tropical forest ecosystems of the Eastern Arc mountains in Tanzania.

  3. Observation of 23 Supernovae that Exploded <300 pc from Earth During the Past 300 kyr in the Radiocarbon and 10Be Cosmogenic Isotope Record

    NASA Astrophysics Data System (ADS)

    Firestone, R. B.

    2014-12-01

    The global excess radiocarbon abundance record for the past 50 kyr can be entirely explained by the explosion of four supernovae 44, 37, 32, and 22 kyr ago less than 250 pc from Earth. Each supernova left a nearly identical signature beginning with a sudden increase at the time of the explosion, followed by a hiatus of 1500 years, and continuing with a sustained, 2000 year increase in radiocarbon from gamma rays produced by diffusive shock in the supernova remnant. For the past 18 kyr excess radiocarbon from SN22kyrBP, identified as the Vela supernova, has decayed with the 5700 year half-life of 14C. The absolute scale for radiocarbon abundance has been determined from the decay curve as Δ14C=5±2% in 1950. Small oscillations in the decay curve are shown to coincide with variations in Earth's Virtual Axial Dipole Moment (VADM). SN44kyrBP exploded approximately 110 pc from Earth doubling the radiocarbon abundance. These supernovae are confirmed in the 10Be, 26Al, 36Cl and nitrate geological records. An additional 19 supernovae are observed 50-300 kyr ago in the 10Be record. Using the Earth as a calorimeter I have determined that approximated 2×1049 ergs were released at the time of each supernova explosion and 1049-50 ergs afterwards, consistent with theoretical predictions. The background rate of radiocarbon productions from more distant sources was determined as 1.61 atoms/cm2s at the top of the atmosphere. Although little danger to life on Earth is expected from these supernovae, each of the recent events were shown to correlate with concurrent global warming of 3-4°C.

  4. High Sedimentation Rate Paleomagnetic Records for the Last 70 kyrs From the Chilean Margin (ODP Sites 1233, 1234, 1235)

    NASA Astrophysics Data System (ADS)

    Stoner, J. S.; Lund, S.; Channell, J. E.; Mix, A. C.; Davies, M. H.; Lamy, F.

    2008-12-01

    Sediments that accumulate at around 1-m/kyr or greater preserve a paleomagnetic record that, under favorable conditions, may record the original geomagnetic input with little smoothing. However, such great rates of accumulation come with a price as features of interest are often deeply buried and may only be adequately recovered using drilling technologies. Here we present a full-vector geomagnetic reconstruction for the last 70,000 yrs from ultrahigh resolution records obtained through ODP drilling (Leg 202) on the Chilean Margin. ODP Site 1233 (41.0 S, 74.26 W, water depth 838 m) provides a 135-mcd u-channel derived directional paleomagnetic secular variation (PSV) and relative paleointensity (RPI) records. The chronology is constrained by AMS radiocarbon dates and tuning of alkenone sea surface temperature to Antarctic ice core temperature records back to 70,000 years BP. To the north, ODP Sites 1234 (36.13 S, 73.40W, water depth 1015 m) and 1235 (36.9 S, 73.33 W, water depth 489 m) provide independently dated shipboard and developing u-channel paleomagnetic records that reproduce many of the geomagnetic features observed at Site 1233 including excursions and high amplitude PSV intervals, while providing additional radiocarbon and isotopic constraints for development of a regional master chronology. All three Sites have exceptionally high glacial sedimentation rates that average 2-m/kyr for 1233, 80-cm/kyr for 1234 and 1-m/kyr for 1235. Fortuitously, the Laschamp magnetic excursion at Site 1233 occurs during an interval where sedimentation rates exceed 3-m/kyr. The Site 1233 chronology indicates that the Laschamp event, centered at 41,000 yrs BP, has a duration in reverse polarity of only 600 yrs, with polarity transitions occurring in less than 200 yrs within a 1500 yr long interval of low RPI. The path of virtual geomagnetic pole (VGP) positions for the Laschamp excursion at Site 1233 is generally consistent with the hypothesis of a simple field geometry

  5. Late Quaternary vegetation and environments in the Verkhoyansk Mountains region (NE Asia) reconstructed from a 50-kyr fossil pollen record from Lake Billyakh

    NASA Astrophysics Data System (ADS)

    Müller, Stefanie; Tarasov, Pavel E.; Andreev, Andrei A.; Tütken, Thomas; Gartz, Steffi; Diekmann, Bernhard

    2010-08-01

    Here we present a detailed radiocarbon-dated 936 cm long pollen record from Lake Billyakh (65°17'N, 126°47'E; 340 m a.s.l.) situated in the western part of the Verkhoyansk Mountains, about 140 km south of the Arctic Circle. A set of 53 surface pollen samples representing tundra, cold deciduous forest and taiga was collected in northern and central Yakutia communities to verify the accuracy of the quantitative biome reconstruction method and to obtain a more precise attribution of the identified pollen taxa to the main regional biomes. The adjusted method is then applied to the pollen record from Lake Billyakh to gain a reconstruction of vegetation and environments since about 50.7 kyr BP. The results of the pollen analysis and pollen-based biome reconstruction suggest that herbaceous tundra and steppe communities dominated the area from 50.7 to 13.5 kyr BP. Relatively low pollen concentrations and high percentages of herbaceous pollen taxa (mainly Cyperaceae, Poaceae and Artemisia) likely indicate a reduced vegetation cover and/or lower pollen production. On the other hand, extremely low percentages of drought-tolerant taxa, such as Chenopodiaceae and Ephedra, and the constant presence of various mesophyllous herbaceous ( Thalictrum, Rosaceae, Asteraceae) and shrubby taxa ( Betula sect. Nanae/Fruticosae, Duschekia fruticosa, Salix) in the pollen assemblages prevent an interpretation of the last glacial environments around Lake Billyakh as extremely arid. The lowest pollen percentages of woody taxa and the highest values of Artemisia pollen attest that the 31-15 kyr BP period as the driest and coldest interval of the entire record. A relative high content of taxa representing shrub tundra communities and the presence of larch pollen recorded prior to 31 kyr and after 13.5 kyr BP likely indicate interstadial climate amelioration associated with the middle and latest parts of the last glacial. An increase in pollen percentages of herbaceous taxa around 12 kyr BP

  6. Scenario Of The 4 kyr Extraterrestrial Impact : Crater Location, Ejecta-Dispersion and Consequences.

    NASA Astrophysics Data System (ADS)

    Courty, M.; Abbott, D. H.; Cortese, G.; Crisci, A.; Crosta, X.; de Wever, P.; Fedoroff, M.; Greenwood, P.; Grice, K.; Mermoux, M.; Scharer, U.; Smith, D. C.; Thiemens, M. H.

    2006-12-01

    The 4 kyr BP impact event has been identified from deep-sea, soil and archaeological records as the worldwide pulverisation of a volatile-rich debris jet(1). High resolution sequences show two stages of ejecta fallout linked to the impact-triggered doublet gaseous regime(2): scattered solid debris at the ground surface and spray of the vaporized hot fireball with thermal blast and local ignition. Ejecta debris consist of flow- textured impact glass, impact breccia and incompletely melted marine clasts: volcano-clastic sandy mudstone, calcareous mud, granite-gneiss, schists, volcanic breccia, kerogen and algal mud. Marine microfossils, organo-mineral markers, and the debris-fallout spatial pattern indicate two potential impact craters: an Antarctic source with an admixture of volcanic glass and ice rafted debris, from the vicinity of Heard Island and the Kerguelen plateau; a low latitude, shallow water one with hydrocarbons possibly from the Gulf of Mexico. Fine mixing of target materials from far distant source craters emphasizes a unique impact-ejecta. This matches the theoretical view of a debris jet channelled along the corridor cut through the atmosphere by the incoming projectile, raised upward, and dispersed widely(3). The isotopic anomaly of the sulphur phase in the kerogen volatile-component, indicating mass independent fractionation due to photolytic transformation, suggests launching at great heights, beyond the O2-O3 UV shield, responsible for climate disturbances. The incomplete melting of target rocks and global dispersion of impact breccia out of the craters would result from splash of small-sized projectile at rather great water depth and a low angle impact (10-15 degrees) into porous, highly compressible marine sediments. The spatially variable distribution of the organo-mineral and melt components, and the wide range of phase transformation reflect nonequilibrium shock-melting and micro-scale thermal processes in the heterogeneous vapor plume

  7. Does ice accretion temperature and geothernmal heating pace the change from ~40 kyr to ~100 kyr glacial cycles?

    NASA Astrophysics Data System (ADS)

    Buck, W. R.

    2008-12-01

    The growth and decay of ice sheets are clearly linked to cycles of the Earth's orbit, particularly the ~41 kyr obliquity cycle. Early Pleistocene ice ages appear to have grown and decayed on a timescale close to the obliquity period, while the period for late Pleistocene ice ages averages closer to 100 kyr. The thermal state of an ice sheet may control whether the climatic changes produced by orbital changes are can lead to the termination of an ice age. Numerous model studies indicate that the termination of ice ages requires glacial flow that is faster than expected for cold-based ice sheets. Fast flow likely requires that the base of the ice sheet be partially melted. Large ice sheets probably accrete cold, but geothermal heating can melt the base of an ice sheet if the surface of the ice is not too cold (as it may be in Antarctica) or if the accretion rate is not too high (as it may be in Greenland). The timescale for basal melting depends on the initial temperature structure of the ice sheet and on the rate of geothermal heating. For example the melting timescale depends on the square of the initial temperature of the ice sheet base. Although some workers assume parameters that give a melting timescale of less than 10 kyrs, reasonable values of ice temperature and terrestrial heatflow could give a timescale several times longer. One-dimensional numerical ice sheet flow models with a rate of ice accretion/ablation paced at 41 kyrs show a periodicity of the glacial cycles that depends on the period of basal melting. If the melting period is short (say <~30 kyrs) then the base of the ice sheet will be partially melted in time for the obliquity maximum that could produce a termination. The ice sheet then disappears at this first obliquity maximum after ice sheet initiation because it can flow fast enough to melt at lower latitudes and elevations. For longer basal melting periods the entire ice sheet may not be warm enough to flow fast enough to lead to termination

  8. Multi-proxy sedimentary record from Lake Ghirla (N-Italy) reveals hydro-climatic variations and periods of anthropogenic activities during the past 13 kyrs

    NASA Astrophysics Data System (ADS)

    Wirth, Stefanie B.; Gilli, Adrian; Sessions, Alex L.

    2016-04-01

    Lake Ghirla is a small lake that lies in the southern foothills of the Central Alps near the Swiss-Italian border. Climatically, the region is influenced by North Atlantic and Mediterranean weather systems and is frequently affected by severe storm tracks causing heavy precipitation. The catchment with Permian granites and gneisses contains Pb in amounts significant for mining as well as less important concentrations of Cu, As and U. This sensitive setting makes Lake Ghirla a promising site to reconstruct hydro-climatic variations and to track human activity by means of elevated heavy metal concentrations in the lake sediments. The recovered sediment core comprises the entire Younger Dryas-Holocene time period and was analyzed for (i) sedimentological changes to identify flood deposits, for (ii) the hydrogen isotopic composition of terrestrial plant waxes (plant-wax D/H) to constrain hydro-climatic changes, and for (iii) variations of the elemental composition (XRF core scanning, ICP-MS) to understand anthropogenic impacts. During the past 13 kyrs, we observe a high variability of floods with peak periods appearing at ~11, 10.6-8.2, 6-4.9, 2.8-2.7, 2.6-2.4, 1.2-1 and 0.4-0.1 (LIA) cal kyr BP. From a hydro-climatic perspective, the most remarkable result from the plant-wax D/H data is that the Younger Dryas is characterized by no significant change and that the 2.8-2.7 kyr BP and LIA intervals show an increase of plant-wax D/H values. Hence, during these three cool climatic periods temperature effects cannot be solely responsible for plant-wax D/H variation. The southward migration of the westerly storm tracks above the North Atlantic due to climate cooling must have led to a more southern and thus isotopically enriched moisture source for the southern Alps. This moisture-source change likely counter-balanced or even over-rode the temperature-driven isotope effect. Increased sedimentary Cu concentrations at 3.8-3.3 kyr BP are the first evidence for the presence of

  9. The Sima de los Huesos hominids date to beyond U/Th equilibrium (>350 kyr) and perhaps to 400-500 kyr: New radiometric dates

    USGS Publications Warehouse

    Bischoff, J.L.; Shamp, D.D.; Aramburu, Arantza; Arsuaga, J.L.; Carbonell, E.; Bermudez de Castro, Jose Maria

    2003-01-01

    The Sima de los Huesos site of the Atapuerca complex near Burgos, Spain contains the skeletal remains of at least 28 individuals in a mud breccia underlying an accumulation of the Middle Pleistocene cave bear (U. deningeri). Earlier dating estimates of 200 to 320 kyr were based on U-series and ESR methods applied to bones, made inaccurate by unquantifiable uranium cycling. We report here on a new discovery within the Sima de los Huesos of human bones stratigraphically underlying an in situ speleothem. U-series analyses of the speleothem shows the lower part to be at isotopic U/Th equilibrium, translating to a firm lower limit of 350 kyr for the SH hominids. Finite dates on the upper part suggest a speleothem growth rate of c. 1 cm/32 kyr. This rate, along with paleontological constraints, place the likely age of the hominids in the interval of 400 to 600 kyr. ?? 2002 Elsevier Science Ltd. All rights reserved.

  10. Late Neogene East Asian monsoon: from winter to summer dominated sub-regime and periodicity transition from 100 kyr to 41 kyr

    NASA Astrophysics Data System (ADS)

    Li, F.; Rousseau, D.-D.; Wu, N.; Hao, Q.; Pei, Y.

    2009-04-01

    More and more evidence indicates that the onset of the East Asian (EA) monsoon can be traced back to the Oligocene-Miocene boundary (at about 23 Ma). However, the process of its evolution is still less well known until now. Here we investigate its late Neogene evolution by analyzing a terrestrial mollusk sequence, from the Chinese Loess Plateau (CLP), covering the period between 7.1 and 3.5 Ma. Considering the modern ecological requirements of these organisms, we were able to define two groups of cold-aridiphilous (CA) and thermo-humidiphilous (TH) species, representing the EA winter and summer monsoon variations, respectively, as previously defined in the Quaternary glacial-interglacial cycles. Variations in these two groups indicate two different monsoon dominated periods during 7.1-3.5 Ma. First, between 7.1 and 5.5 Ma, the EA winter monsoon, with a 100 kyr periodicity, was dominant. Second, between 5.1 and 4 Ma, the EA summer monsoon dominated, with a 41 kyr periodicity. Furthermore, our mollusk record yields valuable evidence for a late Miocene-Pliocene transition of about 400 kyr from winter monsoon dominated towards summer monsoon dominated, associated with a periodicity transition from weak 100 kyr to 41 kyr. The strengthened winter monsoon interval, with a 100 kyr periodicity, is coeval with orbital-scale global ice volume changes, in conjunction with the uplift of the Tibetan Plateau which probably reinforced the winter monsoon sub-regime. Conversely, closures of the Panama and Indonesian seaways, associated with changes in obliquity between 5.1 and 4 Ma, are probably major forcing factors for the observed dominant summer monsoon with 41 kyr frequency, favoring heat and moisture transports between low and high latitudes to allow TH mollusks to grow and develop in the CLP. The transition from a 100 kyr dominated interval towards a 41 kyr dominated one is contrary to the mid-Pleistocene transition (MPT), which corresponds to ice volume expansion at high

  11. Latitudinal Hydrologic Variability Along the East African Rift, Over the Past 200 Kyr

    NASA Astrophysics Data System (ADS)

    Scholz, C. A.

    2014-12-01

    Within the deep sediments of the large lakes of Africa's Great Rift Valley are continuous environmental records of remarkable antiquity and fidelity. Not only do stratigraphic sections from these basins extend back millions of years, many of the intervals represented contain high-resolution material of decadal resolution or better. East African lake basins remain sparsely sampled however, with only a few long and continuous records available. Our ability to image the lakes using seismic reflection methods greatly exceeds our opportunities for coring and drilling however; assessing stratal relationships observed in the geophysical data permits powerful inferences about past hydrologic changes. With intensive hydrocarbon exploration work underway in East Africa, industry well data can also help constrain and ground truth basin histories. Substantial spatio-temporal hydrologic variability is observed in East African basins over the past 200 kyr. Paleohydrological changes in the late Pleistocene and early Holocene are now well constrained in the northern hemisphere East African topics, with widespread aridity and in some cases lake desiccation observed during Heinrich Event 1. A climate recovery followed in the northern hemisphere East African tropics, with the early Holocene African Humid Period a time of positive water balance across most of the rift valley. The paleohydrology of southern hemisphere tropical East Africa is more equivocal, for instance with negligible draw-down of Lake Malawi at HE1. Whereas these late Pleistocene events represent substantial climate reorganizations, severe droughts during the middle-late Pleistocene (150-65 kyr BP) were far more intense, and produced much more severe drawdowns of Lakes Malawi and Tanganyika. Scientific drill cores, kullenberg cores, and extensive seismic reflection data sets from Lakes Malawi and Tanganyika provide indisputable evidence for lowstands of -500m and -600 m respectively. Climate changes that lowered the

  12. Quantitative woody cover reconstructions from eastern continental Asia of the last 22 kyr reveal strong regional peculiarities

    NASA Astrophysics Data System (ADS)

    Tian, Fang; Cao, Xianyong; Dallmeyer, Anne; Ni, Jian; Zhao, Yan; Wang, Yongbo; Herzschuh, Ulrike

    2016-04-01

    We present a calibration-set based on modern pollen and satellite-based Advanced Very High Resolution Radiometer (AVHRR) observations of woody cover (including needleleaved, broadleaved and total tree cover) in eastern continental Asia, which shows good performance under cross-validation with the modern analogue technique (all the coefficients of determination between observed and predicted values are greater than 0.65). The calibration-set is used to reconstruct woody cover from a taxonomically harmonized and temporally standardized fossil pollen dataset (including 274 cores) with 500-year resolution over the last 22 kyr. The spatial range of forest has not noticeably changed in eastern continental Asia during the last 22 kyr, although woody cover has, especially at the margin of the eastern Tibetan Plateau and in the forest-steppe transition area of north-central China. Vegetation was sparse during the LGM in the present forested regions, but woody cover increased markedly at the beginning of the Bølling/Allerød period (B/A; ca. 14.5 ka BP) and again at the beginning of the Holocene (ca. 11.5 ka BP), and is related to the enhanced strength of the East Asian Summer Monsoon. Forest flourished in the mid-Holocene (ca. 8 ka BP) possibly due to favourable climatic conditions. In contrast, cover was stable in southern China (high cover) and arid central Asia (very low cover) throughout the investigated period. Forest cover increased in the north-eastern part of China during the Holocene. Comparisons of these regional pollen-based results with simulated forest cover from runs of a global climate model (for 9, 6 and 0 ka BP (ECHAM5/JSBACH ∼1.125° spatial resolution)) reveal many similarities in temporal change. The Holocene woody cover history of eastern continental Asia is different from that of other regions, likely controlled by different climatic variables, i.e. moisture in eastern continental Asia; temperature in northern Eurasia and North America.

  13. Multiproxy approach revealing climate and cultural changes during the last 26kyrs in south-central Chile

    NASA Astrophysics Data System (ADS)

    Abarzua, Ana M.; Jarpa, Leonora; Martel, Alejandra; Vega, Rodrigo; Pino, Mario

    2010-05-01

    Multiproxy approach from Purén Lumaco Valley (38°S) describes the paleonvironmental history during the Last Maximum Glacial (LGM) in south-central Chile. Three sediment cores and severals AMS 14C dates were used to perform a complete pollen, diatoms, chironomids, and sedimentological records demonstrating the existence of a large and non profundal paleolake, between 25 and 20kyr BP. Some of these evidence are laminated silty-clay sediments (lacustrine rhythmites), associated with the presence of siderite mineral (FeCO3), besides biological proxies like Fragilaria construens and Stauroforma inermes (planctonic diatoms), and Dicrotendipes sp. and Tanytarsini tribe (littoral chironomids). The pollen ensemble reveals the first glacial refuge of Araucaria araucana forests in the low lands during the LGM. The lake was drained abruptly into a swamp/bog at 12kyr BP and colonized by Myrtaceae wet forest. This evidence suggest the dry/warm climate period of early Holocene in south-central Chile. Later, the sediments indicate variable lacustrine levels, and increase of charcoal particles, associated to current climatic conditions. The pollen spectrum dominated by Myrtaceae and Nothofagus contrasts with a strongly disturb current landscape. Actually, Purén-Lumaco valley constitutes a complex peat-bog system dominated by exotic grasses and forest species (Tritricum aestivum, Pinus radiata and Eucalyptus spp.). Some archaeological antecedents in the area document the human development at ca. 7yrs BP. The greatest archaeological characteristic present in the valley is the kuel, a Mapuche earth accumulation. The presence and extension of almost 300 kuel in the valley reflect the social/economic development, and partly explains why the region was the major resistance area for Spanish colonizer during XVI-XVII centuries. Also the archaeological findings reveal the presence of maize pollen (Zea mays) within their food consumption. The influence of climate and human impact in

  14. Dome collapse eruption in Tatun Volcanic Group near metropolitan Taipei, Taiwan at ~6 kyrs

    NASA Astrophysics Data System (ADS)

    Chen, C.; Lee, T.

    2010-12-01

    The Tatun Volcanic Group (TVG) is located in the north of metropolitan Taipei, Taiwan. Over 6 million inhabitants are living in Taipei City and suburban area. Another critical issue is an international airport and two nuclear power plants are lying at the foot of the TVG. If the TGV will be re-active, the serious hazard for human lives and economies in this area will definitely occur. Understanding the youngest eruption history of the TVG will be much important for prediction the future activity of eruption. The core was collected from the Dream Lake at the eastern slop of Cising Mt.. Total 21 samples from depth 190 cm to 231.5 cm have been tested. Comparison of chemical compositions of glass and minerals in the volcanic clasts with those of lava around TVG, they clearly showed that the volcanic clasts can be correlated with the eruption of the closest Cising Mt. According to the radiocarbon (C-14) age of core sample at the depth 225 cm, the age was extrapolated around 6150 yrs ca. C-14 B.P.. Moreover, the respiratory cristobalite in the volcanic clasts were firstly identified by the identical morphology, chemical composition and Laser Raman Spectrometry (LRS). The crystalline silica was produced by vapor-phase crystallization and devitrification in the andesite lava dome and volcanic ash generated by pyroclastic flows formed by lava dome collapse in Soufriere Hills volcano, Montserrat (Baxter et al.,1999). These new evidence demonstrated that there would probably have the lava dome collapse eruptions in the TVG in the last 6 kyrs. The result in this paper also sustained that the landslide caused by the weak phreatic eruption within the last 6000 yrs in the TVG (Belousov et al., 2010). It must further be noted that an efficient program of the volcanic hazard reduction should be practiced for the metropolitan Taipei and suburban area.

  15. Frequency variations of the earth's obliquity and the 100-kyr ice-age cycles

    NASA Technical Reports Server (NTRS)

    Liu, Han-Shou

    1992-01-01

    Changes in the earth's climate are induced by variations in the earth's orbital parameters which modulate the seasonal distribution of solar radiation. Periodicities in the geological climate record with cycles of 100, 41, and 23 kyr have been linked with changes in obliquity, eccentricity, and precession of the equinoxes. The effect of variations of eccentricity during a 100 kyr period is weak relative to the signals from obliquity and precession variations and it may therefore be expected that the 100 kyr signal in the climate record would be of low intensity. However, this signal dominates the climate record and internal nonlinear processes within the climate system have previously been proposed to account for this fact. The author shows that variations in the frequency of the obliquity cycle can give rise to strong 100-kyr forcing of climate.

  16. Nd isotopic composition from seawater and sediments of the South China Sea and the Philippine Sea : implications for hydrology of the Pacific Ocean during the last 25 kyr

    NASA Astrophysics Data System (ADS)

    Wu, Qiong; Colin, Christophe; Liu, Zhifei; Thil, Francois; Douville, Eric; Frank, Norbert

    2014-05-01

    Nd isotopic compositions (ɛNd) of foraminifera from one gravity core (MD05-2904; 19°27.32' 116°15.15', 2066 m water depth) and 10 seawater profiles from the northern South China Sea (SCS) and the Philippine Sea (western Pacific Ocean) were measured to (1) constrain the Nd isotopic composition of water masses along the western Pacific and the SCS that are still poorly documented ; (2) track hydrological exchange between the SCS and western Pacific trough the Luzon strait ; (3) to test the ability of foraminifera to establish seawater ɛNd ; (4) to establish past hydrological changes of deep-water circulation in the western Pacific Ocean during the last 25 kyr. Distribution of ɛNd seawater of the Northern SCS and west Pacific indicate that the SCS is dominated by three water masses, the South China Sea Tropical Water (SCSTW) (~-7.7), South China Sea Intermediate Water (SCSIW) (~-3.6) and the Pacific Deep Water (PDW) (~-4). Our results indicate that at present time ɛNd of deep and intermediate waters of the SCS is representative of the PDW. Different analytical procedures to extract seawater ɛNd from foraminiferas (benthic and planktonic) and Fe-Mn coatings precipitated on the sediments have been tested and permit to determine that only ɛNd obtained from foraminiferas are reliable to seawater ɛNd in the South China Sea. A first record of past seawater ɛNd obtained from foraminifera of the core MD05-2904 (northern part of the SCS) indicate major change of the hydrology of the West Pacific during the last 25 kyr. ɛNd values variations indicate two negative excursion during at Heinrich Stadial 1(~16 kyr BP) and ~10 kyr BP implying a reorganization of the deep circulation in the Pacific. Such results are compared with other proxies of deep-water circulation to propose new insight in the role of the southern deep-water pacific circulation on climate during the last deglaciation.

  17. Elevated BP after AKI.

    PubMed

    Hsu, Chi-Yuan; Hsu, Raymond K; Yang, Jingrong; Ordonez, Juan D; Zheng, Sijie; Go, Alan S

    2016-03-01

    The connection between AKI and BP elevation is unclear. We conducted a retrospective cohort study to evaluate whether AKI in the hospital is independently associated with BP elevation during the first 2 years after discharge among previously normotensive adults. We studied adult members of Kaiser Permanente Northern California, a large integrated health care delivery system, who were hospitalized between 2008 and 2011, had available preadmission serum creatinine and BP measures, and were not known to be hypertensive or have BP>140/90 mmHg. Among 43,611 eligible patients, 2451 experienced AKI defined using observed changes in serum creatinine concentration measured during hospitalization. Survivors of AKI were more likely than those without AKI to have elevated BP-defined as documented BP>140/90 mmHg measured during an ambulatory, nonemergency department visit-during follow-up (46.1% versus 41.2% at 730 days; P<0.001). This difference was evident within the first 180 days (30.6% versus 23.1%; P<0.001). In multivariable models, AKI was independently associated with a 22% (95% confidence interval, 12% to 33%) increase in the odds of developing elevated BP during follow-up, with higher adjusted odds with more severe AKI. Results were similar in sensitivity analyses when elevated BP was defined as having at least two BP readings of >140/90 mmHg or those with evidence of CKD were excluded. We conclude that AKI is an independent risk factor for subsequent development of elevated BP. Preventing AKI during a hospitalization may have clinical and public health benefits beyond the immediate hospitalization. PMID:26134154

  18. Reconstruction of the Surface Temperature Change in Central Greenland During D/O 12, 45 Kyr B.P.

    NASA Astrophysics Data System (ADS)

    Caillon, N.; Jouzel, J.; Chappellaz, J.

    2001-12-01

    Air bubbles preserved in polar ice cores are unique archives of past atmospheric composition. Recently, it has been shown that air bubbles isotopic composition (N-15, Ar-40) enables to quantify past abrupt changes in polar regions. In this study, a high resolution measurement of nitrogen and argon isotopes in an ice core from Greenland allows to determine past surface temperature variations and the ice age-gas age difference during the Dansgaard-Oeschger event 12 recorded around 45,000 years before present. These results imply a mean surface temperature change of 8.2 +/- 0.8 ° C and permit to determine a δ 18Oice-temperature coefficient of 0.54 +/- 0.05 ‰ /° C and therefore bring a new constraint to calibrate the isotopic paleothermometer during glacial period. Moreover, a direct comparison with methane concentration will be presented to discuss the phase relationship between the warming and the methane increase.

  19. Stalagmite Survival: 500kyr of Cyclical Growth and Natural Attrition of Stalagmites in Sulawesi

    NASA Astrophysics Data System (ADS)

    Scroxton, N.; Gagan, M. K.; Dunbar, G. B.; Ayliffe, L. K.; Hantoro, W. S.; Shen, C. C.; Hellstrom, J. C.; Zhao, J. X.; Cheng, H.; Edwards, R. L.; Sun, H.; Rifai, H.

    2014-12-01

    Numerous speleothem studies have analysed the age distribution of stalagmites harvested from multiple caves and inferred important changes in paleoclimates to explain stalagmite growth phases. However, stalagmites take tens to hundreds of thousands of years to grow, and thus the twin desires to preserve the cave condition for future generations and advance palaeoclimate science are often in conflict. In this study we use U/Th ages from low impact mini-cores extracted in situ from the bases of stalagmites, thus keeping the intrinsic value of the cave intact. Our case study is based on 77 individual stalagmites drilled in situ in thirteen caves located in and around Bantimurung-Bulusaraung National Park, South Sulawesi, Indonesia. The stalagmites grew during discrete time intervals within the last ~530,000 years, and analysis of their age distribution shows an exponential decrease in the number of older stalagmites surviving to the present day. The age distribution indicates that the rate of natural attrition of stalagmites is approximately constant through time, probably in response to a number of natural processes, including downward erosion of the karst terrain, cave collapse, in-cave erosional processes and in-cave sedimentation covering stalagmites. Natural attrition of stalagmites is likely to be a general cave phenomenon, and has important implications for cave conservation because it highlights that random removal of stalagmites without prior knowledge of their ages will result in unnecessary replication and a failure to sample the full length of the available paleoclimate record. Departure from this "normal" exponential profile can be used to infer palaeoclimate information: significant deviations are produced by periods of more frequent stalagmite growth, inferred here to reflect increases in monsoon rainfall over Sulawesi (345-340, 75-70 and 10-5 kyr BP). By adjusting the record to account for stalagmite attrition, more statistically robust paleoclimate

  20. An 84-kyr paleomagnetic record from the sediments of Lake Baikal, Siberia

    USGS Publications Warehouse

    Peck, J.A.; King, J.W.; Colman, Steven M.; Kravchinsky, V.A.

    1996-01-01

    We have conducted a paleomagnetic study of sediment cores obtained from the Selenga prodelta region of Lake Baikal, Russia. This record, which spans approximately the last 84 kyr, contributes to a better understanding of the nature of geomagnetic field behavior in Siberia and is a useful correlation and dating tool. We demonstrate that the Lake Baikal sediments are recording variations in the geomagnetic field. The directional record displays secular variation behavior with a geomagnetic excursion at 20 ka and additional excursions appearing as large-amplitude secular variation at 41, 61, and 67 ka. Smoothing of the geomagnetic excursion behavior occurs in Lake Baikal sediments owing to the intermediate sedimentation rate (13 cm kyr-1). The Lake Baikal relative paleointensity record correlates to absolute paleointensity data for the last 10 kyr and to relative paleointensity records from the Mediterranean Sea and Indian Ocean for the last 84 kyr. This correlation suggests a strong global (i.e., dipole) component to these records and further supports the reliability of sediments as recorders of relative geomagnetic paleointensity. We show that a relative geomagnetic intensity stratigraphy has a potential resolution of 7 kyr by correlating continental and marine records. The geomagnetic intensity stratigraphy helps constrain the age of the difficult to date Lake Baikal sediments.

  1. The bioavailable iron in NEEM ice core related to Asian dust records over the past 110 kyr

    NASA Astrophysics Data System (ADS)

    Xiao, Cunde

    2016-04-01

    The mineral dust can indirectly affect climate by supplying iron and other essential bioavailable elements into ocean. In this study, we present dissolved iron (DFe) and total dissolved iron (TDFe) concentrations in NEEM ice core over the past 110 kyr B.P. The concentrations of bioavailable reactive element Fe have good positive correlation with the concentrations of dust and Ca2+ in NEEM ice core, while show significantly negative relationship with δ18O and CO2 concentration. The ratios of DFe/TDFe are higher in warm periods (Holocene and last interglacial) than in cold period (LGM), indicating the iron-biological pump effect is more significant in warm periods than that in cold periods, this result may provide a new insight for reevaluating the iron hypothesis over glacial/interglacial periods. Our study also shows that the iron flux changes between NEEM ice core and Asian loess records are good consistent with the northern Hemisphere summer insolation. These results emphasize that the variability of Fe flux is most likely driven by solar radiation and dust in northern hemisphere.

  2. 78 FR 60270 - BP America Inc., BP Corporation North America Inc., BP America Production Company, and BP Energy...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-01

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission BP America Inc., BP Corporation North America Inc., BP America Production Company, and BP Energy Company; Notice of Designation of Commission Staff as Non-Decisional With...

  3. Late Quaternary evolution of Lago Castor (Chile, 45.6°S): Timing of the deglaciation in northern Patagonia and evolution of the southern westerlies during the last 17 kyr

    NASA Astrophysics Data System (ADS)

    Van Daele, Maarten; Bertrand, Sébastien; Meyer, Inka; Moernaut, Jasper; Vandoorne, Willem; Siani, Giuseppe; Tanghe, Niels; Ghazoui, Zakaria; Pino, Mario; Urrutia, Roberto; De Batist, Marc

    2016-02-01

    Even though Patagonia is ideally located to study climate of the southern mid-latitudes, many questions on the late Quaternary climate evolution remain unresolved. The timing of maximum glacier extent is still uncertain in vast areas, and the postglacial evolution of the Southern Westerly Wind Belt (SWWB) remains highly debated. Here, we study the sedimentary infill of a glacigenic lake (Lago Castor; 45.6°S, 71.8°W) located at the leeside of the Andes in Chilean Patagonia to i) reconstruct the deglacial evolution of the eastern flank of the Patagonian Ice Sheet (PIS), and ii) discuss postglacial changes in wind strength at a critical location where westerly wind records are critically lacking. A dense grid of high-resolution reflection-seismic data was used to reconstruct the large-scale infill history of the lake, and a radiocarbon dated sediment core penetrating all lacustrine seismic units, was retrieved. Results indicate that the deglaciation of the lake basin and its catchment occurred no later than ˜28 cal kyr BP (i.e. an early LGM), but possibly even already after MIS 4. Afterwards, the Lago Castor area was covered by a large proglacial lake that drained - possibly through an outburst flood - when the PIS outlet glaciers retreated to a critical location. Subsequently, very dry conditions caused the lake to desiccate, as evidenced by an unconformity visible on the seismic profiles and in the sediment core. This dry period likely resulted from the increased orographic effect of the PIS-covered Andes, accompanied by weaker westerlies. From ˜20 kyr BP onwards, the combination of a shrinking PIS and a southward shift of the SWWB resulted in increased precipitation, which caused the lake level to rise. After ˜17 cal kyr BP, lake sedimentation was more directly influenced by the southern westerlies, with the formation of sediment drifts resulting from strong bottom current during periods of intense westerly winds. Our results suggest a progressive increase in

  4. Late Quaternary evolution of Lago Castor (Chile, 45.6°S): Timing of the deglaciation in northern Patagonia and evolution of the southern westerlies during the last 17 kyr

    NASA Astrophysics Data System (ADS)

    Van Daele, Maarten; Bertrand, Sébastien; Meyer, Inka; Moernaut, Jasper; Vandoorne, Willem; Siani, Giuseppe; Tanghe, Niels; Ghazoui, Zakaria; Pino, Mario; Urrutia, Roberto; De Batist, Marc

    2016-02-01

    Even though Patagonia is ideally located to study climate of the southern mid-latitudes, many questions on the late Quaternary climate evolution remain unresolved. The timing of maximum glacier extent is still uncertain in vast areas, and the postglacial evolution of the Southern Westerly Wind Belt (SWWB) remains highly debated. Here, we study the sedimentary infill of a glacigenic lake (Lago Castor; 45.6°S, 71.8°W) located at the leeside of the Andes in Chilean Patagonia to i) reconstruct the deglacial evolution of the eastern flank of the Patagonian Ice Sheet (PIS), and ii) discuss postglacial changes in wind strength at a critical location where westerly wind records are critically lacking. A dense grid of high-resolution reflection-seismic data was used to reconstruct the large-scale infill history of the lake, and a radiocarbon dated sediment core penetrating all lacustrine seismic units, was retrieved. Results indicate that the deglaciation of the lake basin and its catchment occurred no later than ∼28 cal kyr BP (i.e. an early LGM), but possibly even already after MIS 4. Afterwards, the Lago Castor area was covered by a large proglacial lake that drained - possibly through an outburst flood - when the PIS outlet glaciers retreated to a critical location. Subsequently, very dry conditions caused the lake to desiccate, as evidenced by an unconformity visible on the seismic profiles and in the sediment core. This dry period likely resulted from the increased orographic effect of the PIS-covered Andes, accompanied by weaker westerlies. From ∼20 kyr BP onwards, the combination of a shrinking PIS and a southward shift of the SWWB resulted in increased precipitation, which caused the lake level to rise. After ∼17 cal kyr BP, lake sedimentation was more directly influenced by the southern westerlies, with the formation of sediment drifts resulting from strong bottom current during periods of intense westerly winds. Our results suggest a progressive increase

  5. Blood pressure (BP) assessment-from BP level to BP variability.

    PubMed

    Feber, Janusz; Litwin, Mieczyslaw

    2016-07-01

    The assessment of blood pressure (BP) can be challenging in children, especially in very young individuals, due to their variable body size and lack of cooperation. In the absence of data relating BP with cardiovascular outcomes in children, there is a need to convert absolute BP values (in mmHg) into age-, gender- and height appropriate BP percentiles or Z-scores in order to compare a patient's BP with the BP of healthy children of the same age, but also of children of different ages. Traditionally, the interpretation of BP has been based mainly on the assessment of the BP level obtained by office, home or 24-h BP monitoring. Recent studies suggest that it is not only BP level (i.e. average BP) but also BP variability that is clinically important for the development of target organ damage, including the progression of chronic kidney disease. In this review we describe current methods to evaluate of BP level, outline available methods for BP variability assessment and discuss the clinical consequences of BP variability, including its potential role in the management of hypertension. PMID:26201477

  6. Investigating the Impacts of Climate, Hydrology, and Asian Monsoon Intensity on a 13 kyr Speleothem Record from Laos

    NASA Astrophysics Data System (ADS)

    Yang, Hongying

    I present a high- resolution record of Southeast Asian Monsoon (SEAM) evolution compiled from delta18O measurements conducted on five U-Th dated speleothems from Tham Mai Cave in northern Laos (20.75N, 102.65E), a key site at the interface between the Indian and East Asian monsoon systems. The speleothem oxygen isotope records are tied to robust uranium-series dates and indicate the records span from 0.79 to 13 kyr BP with sub-decadal resolution. During the Holocene, the Tham Mai speleothem delta18O records are characterized by lower values during the early to mid-Holocene with increasing values towards the late Holocene. This is similar to trends seen throughout the Asian monsoon region, reflecting the strong insolation control on monsoon strength and ITCZ position. The Younger Dryas is characterized by an abrupt delta 18O increase and is synchronous with the even observed in Chinese speleothem records and Greenland ice cores within age uncertainties. This suggests that the SEAM weakened in sync with high-latitude abrupt cooling events. Four speleothems from Tham Mai cave grew contemporaneously from 4,300 years BP to 9,000 years BP. These four samples show a similar delta 18O pattern, despite a 1.2‰ between sample delta18 O variability is observed. A lumped parameter forward model method (KarstFor model) is used to assess to which extent this 1.2‰ discrepancy can be attributed to hydrological variability. Results suggested that this 1.2‰ discrepancy can be generated due to hydrological variability within one cave. To better interpret interannual delta18O variability in high-resolution oxygen isotope records in the Asian Monsoon region, I utilize existing simulations from a spectrally nudged isotope-enabled general circulation model (IsoGSM) to investigate the climatic controls on delta18 Op at four cave locations along the Asian monsoon region. Results show that delta18Op at the four cave sites reflects large-scale ocean-atmosphere processes, instead of

  7. Mesozoic cyclostratigraphy, the 405-kyr orbital eccentricity metronome, and the Astronomical Time Scale (Invited)

    NASA Astrophysics Data System (ADS)

    Hinnov, L.; Ogg, J. G.

    2009-12-01

    Mesozoic cyclostratigraphy from around the world is being assessed to construct a continuous Astronomical Time Scale (ATS) based on Earth’s cyclic orbital parameters. The recognition of a prevalent sedimentary cycling with a ~400-kyr period associated with forcing by the stable 405-kyr orbital eccentricity variation is an important development. Numerous formations spanning 10 to 20 myr (and longer) intervals in the Cretaceous, Jurassic and Triassic clearly express this dominant cycle and provide a robust basis for 405-kyr-scale calibration of the ATS. This 405-kyr metronome will enable extension of the well-defined Cenozoic ATS for scaling of the past quarter-billion years of Earth history. This astronomical calibration has a resolution comparable to the 1% to 0.1% precision for radioisotope dating of Mesozoic ash beds, with the added benefit of providing continuous stratigraphic coverage between dated beds. Extended portions of the Mesozoic ATS have already provided new insights into long-standing geologic problems of seafloor spreading, tectonics, eustasy, and paleoclimate change. Ongoing work is focused on closing gaps in coverage and on collecting duplicate cyclostratigraphic records for the entire Mesozoic Era.

  8. A distal 140 kyr sediment record of Nile discharge and East African monsoon variability

    NASA Astrophysics Data System (ADS)

    Ehrmann, Werner; Schmiedl, Gerhard; Seidel, Martin; Krüger, Stefan; Schulz, Hartmut

    2016-03-01

    Clay mineral assemblages in a sediment core from the distal Nile discharge plume off Israel have been used to reconstruct the late Quaternary Nile sediment discharge into the eastern Mediterranean Sea (EMS). The record spans the last ca. 140 kyr. Smectite abundances indicate the influence of the Blue Nile and the Atbara River that have their headwaters in the volcanic rocks of the Ethiopian Highlands. Kaolinite abundances indicate the influence of wadis, which contribute periodically to the suspension load of the Nile. Due to the geographical position, the climate and the sedimentary framework of the EMS is controlled by two climate systems. The long-term climate regime was governed by the African monsoon that caused major African humid periods (AHPs) with enhanced sediment discharge at 132 to < 126 (AHP 5), 116 to 99 (AHP4), and 89 to 77 ka (AHP3). They lasted much longer than the formation of the related sapropel layers S5 (> 2 kyr), S4 (3.5 kyr), and S3 (5 kyr). During the last glacial period (Marine Isotope Stages (MISs) 4-2), the long-term changes in the monsoonal system were superimposed by millennial-scale changes in an intensified midlatitude glacial system. This climate regime caused short but pronounced drought periods in the Nile catchment, which are linked to Heinrich events and alternate with more humid interstadials. The clay mineral record further implies that feedback mechanisms between vegetation cover and sediment discharge of the Nile are detectable but of minor importance for the sedimentary record in the southeastern Mediterranean Sea during the investigated African humid periods.

  9. Causal links between Nile floods and eastern Mediterranean sapropel formation during the past 125 kyr confirmed by OSL and radiocarbon dating of Blue and White Nile sediments

    NASA Astrophysics Data System (ADS)

    Williams, M. A. J.; Duller, G. A. T.; Williams, F. M.; Woodward, J. C.; Macklin, M. G.; El Tom, O. A. M.; Munro, R. N.; El Hajaz, Y.; Barrows, T. T.

    2015-12-01

    It has long been hypothesised that beds of highly organic mud or sapropels seen in marine sediment cores retrieved from the floor of the eastern Mediterranean accumulated during times of high Nile fluvial discharge. Our recent fieldwork in the valleys of the Blue Nile, the White Nile and the main Nile has for the first time revealed a sequence of extreme flood episodes synchronous with sapropel units S5 (124 kyr), S4 (102 kyr), S3 (81 kyr), S2 (55 kyr) and S1 (13.5-6.5 kyr). There are more weakly defined links with Nile floods and sapropel units S9 (240 kyr), S8 (217 kyr), S7 (195 kyr), S6 (172 kyr), but the dating error terms are too large to allow us to be too definite. During times of extreme floods over the past 125 kyr, wide distributary channels of the Blue Nile flowed across the Gezira alluvial fan in central Sudan and transported a bed load of sand and gravel into the lower White Nile valley. The sands were reworked by wind to form source-bordering dunes, all of which contain heavy minerals of Ethiopian provenance. These source-bordering dunes were active at 115-105 kyr, 60 kyr and 12-7 kyr, all times of extreme Blue Nile floods. The flood and dune sediments were dated using a combination of optically stimulated luminescence (OSL) and radiocarbon analyses. The Quaternary record of Nile floods discussed here shows a precessional signal and reflects episodes of stronger summer monsoon and more northerly seasonal movement of the ITCZ, linked to times of higher insolation in northern tropical latitudes. Progressive aggradation of Holocene Nile channels in northern Sudan has had a profound influence upon human settlement in the last 8 kyr.

  10. Insolation-driven 100 kyr glacial cycles and millennial climate change

    NASA Astrophysics Data System (ADS)

    Abe-Ouchi, A.; Saito, F.; Kawamura, K.; Raymo, M. E.; Okuno, J.; Takahashi, K.; Blatter, H.

    2013-12-01

    The waxing and waning of Northern Hemisphere ice sheets over the past one million years is dominated by an approximately 100-kyr periodicity and a sawtooth pattern (gradual growth and fast termination). Milankovitch theory proposes that summer insolation at high northern latitudes drives the glacial cycles, and statistical tests demonstrated that the glacial cycles are indeed linked to eccentricity, obliquity and precession cycles. However, insolation alone cannot explain the strong 100 kyr cycle which presumably arises through internal climatic feedbacks. Prior work with conceptual models, for example, showed that glacial terminations are associated with the build-up of Northern Hemisphere 'excess ice', but the physical mechanisms of 100-kyr cycle at work remain unclear. Here, using comprehensive climate and ice sheet models, we show that the ~100-kyr periodicity is explained by insolation and internal feedback amongst the climate, ice sheet and lithosphere/asthenosphere system (reference). We found that equilibrium states of ice sheets exhibit hysteresis responses to summer insolation, and that the shape and position of the hysteresis loop play a key role in determining the periodicities of glacial cycles. The hysteresis loop of the North American ice sheet is such that, after its inception, the ice sheet mass balance remains mostly positive or neutral through several precession cycles whose amplitude decreases towards an eccentricity minimum. The larger the ice sheet grows and extends towards lower latitudes, the smaller is the insolation required to turn the mass balance to negative. Therefore, once the large ice sheet is established, only a moderate increase in insolation can trigger a negative mass balance, leading to a complete retreat within several thousand years, due to the delayed isostatic rebound. The effect of ocean circulation and millennial scale climate change are not playing the dominant role for determing the 100kyr cycle, but are effective for

  11. Hydrographic changes of the Southern Ocean (southeast Indian Sector) Over the last 230 kyr

    NASA Astrophysics Data System (ADS)

    Labeyrie, Laurent; Labracherie, Monique; Gorfti, Nabila; Pichon, Jean Jacques; Vautravers, Maryline; Arnold, Maurice; Duplessy, Jean-Claude; Paterne, Martine; Michel, Elizabeth; Duprat, Josette; Caralp, Michelle; Turon, Jean-Louis

    1996-02-01

    Hydrographical changes of the southern Indian Ocean over the last 230 kyr, is reconstructed using a 17-m-long sediment core (MD 88 770; 46°01'S 96°28'E, 3290m). The oxygen and carbon isotopic composition of planktonic (N. pachyderma sinistra and G. bulloides) and benthic (Cibicidoides wuellerstorfi, Epistominella exigua, and Melonis barleeanum) foraminifera have been analysed. Changes in sea surface temperatures (SST) are calculated using diatom and foraminiferal transfer functions. A new core top calibration for the Southern Ocean allows an extension of the method developed in the North Atlantic to estimate paleosalinities (Duplessy et al., 1991). The age scale is built using accelerator mass spectrometry (AMS) 14C dating of N. pachyderma s. for the last 35 kyr, and an astronomical age scale beyond. Changes in surface temperature and salinity clearly lead (by 3 to 7 kyr) deep water variations. Thus changes in deep water circulation are not the cause of the early response of the surface Southern Ocean to climatic changes. We suggest that the early warming and cooling of the Southern Ocean result from at least two processes acting in different orbital bands and latitudes: (1) seasonality modulated by obliquity affects the high-latitude ocean surface albedo (sea ice coverage) and heat transfer to and from the atmosphere; (2) low-latitude insolation modulated by precession influences directly the atmosphere dynamic and related precipitation/ evaporation changes, which may significantly change heat transfer to the high southern latitudes, through their control on latitudinal distribution of the major frontal zones and on the conditions of intermediate and deep water formation.

  12. The Liang Bua faunal remains: a 95k.yr. sequence from Flores, East Indonesia.

    PubMed

    van den Bergh, G D; Meijer, H J M; Due Awe, Rokhus; Morwood, M J; Szabó, K; van den Hoek Ostende, L W; Sutikna, T; Saptomo, E W; Piper, P J; Dobney, K M

    2009-11-01

    Excavations at Liang Bua, a limestone cave on the island of Flores, East Indonesia, have yielded a well-dated archaeological and faunal sequence spanning the last 95k.yr., major climatic fluctuations, and two human species -H. floresiensis from 95 to 17k.yr.(1), and modern humans from 11k.yr. to the present. The faunal assemblage comprises well-preserved mammal, bird, reptile and mollusc remains, including examples of island gigantism in small mammals and the dwarfing of large taxa. Together with evidence from Early-Middle Pleistocene sites in the Soa Basin, it confirms the long-term isolation, impoverishment, and phylogenetic continuity of the Flores faunal community. The accumulation of Stegodon and Komodo dragon remains at the site in the Pleistocene is attributed to Homo floresiensis, while predatory birds, including an extinct species of owl, were largely responsible for the accumulation of the small vertebrates. The disappearance from the sequence of the two large-bodied, endemic mammals, Stegodon florensis insularis and Homo floresiensis, was associated with a volcanic eruption at 17 ka and precedes the earliest evidence for modern humans, who initiated use of mollusc and shell working, and began to introduce a range of exotic animals to the island. Faunal introductions during the Holocene included the Sulawesi warty pig (Sus celebensis) at about 7ka, followed by the Eurasian pig (Sus scrofa), Long-tailed macaque, Javanese porcupine, and Masked palm civet at about 4ka, and cattle, deer, and horse - possibly by the Portuguese within historic times. The Holocene sequence at the site also documents local faunal extinctions - a result of accelerating human population growth, habitat loss, and over-exploitation. PMID:19058833

  13. Geomagnetic field intensity, North Atlantic Deep Water circulation and atmospheric Δ 14C during the last 50 kyr

    NASA Astrophysics Data System (ADS)

    Laj, Carlo; Kissel, Catherine; Mazaud, Alain; Michel, Elisabeth; Muscheler, Raimund; Beer, Juerg

    2002-06-01

    We present simulated records of past changes in the atmospheric Δ 14C for the last 50 kyr due to changes in geomagnetic field intensity and in the strength of the North Atlantic Deep Water (NADW). A new geomagnetic record was used, largely based on the NAPIS-75 record [Laj et al., Phil. Trans. R. Soc. London A 358 (2000) 1009-1025] which has been extended for the 0-20 kyr interval using archeomagnetic and volcanic data. Past changes of the NADW were derived from a mineral magnetic study of the cores used in the construction of NAPIS-75. Two box models of different complexity (4 and 17 boxes) were used to simulate the carbon cycle. Calculated records of Δ 14C are consistent with experimental determinations for the last 24 kyr. For older ages, the records calculated with variable oceanic circulation conditions reach values as high as 600‰ (with an average of 500‰) between 20 and 40 kyr with maxima around 21, 30 and 38 kyr (GISP2 age model), while low values are observed prior to 42 kyr. Although large inconsistencies in experimental data preclude precise comparison, the average record simulated with the 17-box model is overall consistent with the Icelandic Sea record [Voelker et al., Radiocarbon 40 (1998) 517-534; 42 (2000) 437-452], except for the extremely high peak observed in this record at 40.5 kyr. On the other hand, the results recently reported from a stalagmite recovered from a submerged cave in the Bahamas [Beck et al., Science 292 (2001) 2453-2458] are inconsistent with all our model simulations. In the 20-45 kyr interval, the improved geomagnetic record combined with the new NADW profile allows us to give a modeled evaluation of the relative contribution of these factors to changes in atmospheric Δ 14C. The average simulation provides a first order modeled correction for conventional radiocarbon ages older than 25 kyr for which no calibration curve is available as yet.

  14. A high-resolution mid-Pleistocene temperature record from Arctic Lake El'gygytgyn: a 50 kyr super interglacial from MIS 33 to MIS 31?

    NASA Astrophysics Data System (ADS)

    de Wet, Gregory A.; Castañeda, Isla S.; DeConto, Robert M.; Brigham-Grette, Julie

    2016-02-01

    Previous periods of extreme warmth in Earth's history are of great interest in light of current and predicted anthropogenic warming. Numerous so called "super interglacial" intervals, with summer temperatures significantly warmer than today, have been identified in the 3.6 million year (Ma) sediment record from Lake El'gygytgyn, northeast Russia. To date, however, a high-resolution paleotemperature reconstruction from any of these super interglacials is lacking. Here we present a paleotemperature reconstruction based on branched glycerol dialkyl glycerol tetraethers (brGDGTs) from Marine Isotope Stages (MIS) 35 to MIS 29, including super interglacial MIS 31. To investigate this period in detail, samples were analyzed with an unprecedented average sample resolution of 500 yrs from MIS 33 to MIS 30. Our results suggest the entire period currently defined as MIS 33-31 (∼1114-1062 kyr BP) was characterized by generally warm and highly variable conditions at the lake, at times out of phase with Northern Hemisphere summer insolation, and that cold "glacial" conditions during MIS 32 lasted only a few thousand years. Close similarities are seen with coeval records from high southern latitudes, supporting the suggestion that the interval from MIS 33 to MIS 31 was an exceptionally long interglacial (Teitler et al., 2015). Based on brGDGT temperatures from Lake El'gygytgyn (this study and unpublished results), warming in the western Arctic during MIS 31 was matched only by MIS 11 during the Pleistocene.

  15. Glacial lake drainage in Patagonia (13-8 kyr) and response of the adjacent Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Glasser, Neil F.; Jansson, Krister N.; Duller, Geoffrey A. T.; Singarayer, Joy; Holloway, Max; Harrison, Stephan

    2016-02-01

    Large freshwater lakes formed in North America and Europe during deglaciation following the Last Glacial Maximum. Rapid drainage of these lakes into the Oceans resulted in abrupt perturbations in climate, including the Younger Dryas and 8.2 kyr cooling events. In the mid-latitudes of the Southern Hemisphere major glacial lakes also formed and drained during deglaciation but little is known about the magnitude, organization and timing of these drainage events and their effect on regional climate. We use 16 new single-grain optically stimulated luminescence (OSL) dates to define three stages of rapid glacial lake drainage in the Lago General Carrera/Lago Buenos Aires and Lago Cohrane/Pueyrredón basins of Patagonia and provide the first assessment of the effects of lake drainage on the Pacific Ocean. Lake drainage occurred between 13 and 8 kyr ago and was initially gradual eastward into the Atlantic, then subsequently reorganized westward into the Pacific as new drainage routes opened up during Patagonian Ice Sheet deglaciation. Coupled ocean-atmosphere model experiments using HadCM3 with an imposed freshwater surface “hosing” to simulate glacial lake drainage suggest that a negative salinity anomaly was advected south around Cape Horn, resulting in brief but significant impacts on coastal ocean vertical mixing and regional climate.

  16. Glacial lake drainage in Patagonia (13-8 kyr) and response of the adjacent Pacific Ocean

    PubMed Central

    Glasser, Neil F.; Jansson, Krister N.; Duller, Geoffrey A. T.; Singarayer, Joy; Holloway, Max; Harrison, Stephan

    2016-01-01

    Large freshwater lakes formed in North America and Europe during deglaciation following the Last Glacial Maximum. Rapid drainage of these lakes into the Oceans resulted in abrupt perturbations in climate, including the Younger Dryas and 8.2 kyr cooling events. In the mid-latitudes of the Southern Hemisphere major glacial lakes also formed and drained during deglaciation but little is known about the magnitude, organization and timing of these drainage events and their effect on regional climate. We use 16 new single-grain optically stimulated luminescence (OSL) dates to define three stages of rapid glacial lake drainage in the Lago General Carrera/Lago Buenos Aires and Lago Cohrane/Pueyrredón basins of Patagonia and provide the first assessment of the effects of lake drainage on the Pacific Ocean. Lake drainage occurred between 13 and 8 kyr ago and was initially gradual eastward into the Atlantic, then subsequently reorganized westward into the Pacific as new drainage routes opened up during Patagonian Ice Sheet deglaciation. Coupled ocean-atmosphere model experiments using HadCM3 with an imposed freshwater surface “hosing” to simulate glacial lake drainage suggest that a negative salinity anomaly was advected south around Cape Horn, resulting in brief but significant impacts on coastal ocean vertical mixing and regional climate. PMID:26869235

  17. Toward a continuous 405-kyr-calibrated Astronomical Time Scale for the Mesozoic Era

    NASA Astrophysics Data System (ADS)

    Hinnov, Linda; Ogg, James; Huang, Chunju

    2010-05-01

    Mesozoic cyclostratigraphy is being assembled into a continuous Astronomical Time Scale (ATS) tied to the Earth's cyclic orbital parameters. Recognition of a nearly ubiquitous, dominant ~400-kyr cycling in formations throughout the era has been particularly striking. Composite formations spanning contiguous intervals up to 50 myr clearly express these long-eccentricity cycles, and in some cases, this cycling is defined by third- or fourth-order sea-level sequences. This frequency is associated with the 405-kyr orbital eccentricity cycle, which provides a basic metronome and enables the extension of the well-defined Cenozoic ATS to scale the majority of the Mesozoic Era. This astronomical calibration has a resolution comparable to the 1% to 0.1% precision for radioisotope dating of Mesozoic ash beds, but with the added benefit of providing continuous stratigraphic coverage between dated beds. Extended portions of the Mesozoic ATS provide solutions to long-standing geologic problems of tectonics, eustasy, paleoclimate change, and rates of seafloor spreading.

  18. Glacial lake drainage in Patagonia (13-8 kyr) and response of the adjacent Pacific Ocean.

    PubMed

    Glasser, Neil F; Jansson, Krister N; Duller, Geoffrey A T; Singarayer, Joy; Holloway, Max; Harrison, Stephan

    2016-01-01

    Large freshwater lakes formed in North America and Europe during deglaciation following the Last Glacial Maximum. Rapid drainage of these lakes into the Oceans resulted in abrupt perturbations in climate, including the Younger Dryas and 8.2 kyr cooling events. In the mid-latitudes of the Southern Hemisphere major glacial lakes also formed and drained during deglaciation but little is known about the magnitude, organization and timing of these drainage events and their effect on regional climate. We use 16 new single-grain optically stimulated luminescence (OSL) dates to define three stages of rapid glacial lake drainage in the Lago General Carrera/Lago Buenos Aires and Lago Cohrane/Pueyrredón basins of Patagonia and provide the first assessment of the effects of lake drainage on the Pacific Ocean. Lake drainage occurred between 13 and 8 kyr ago and was initially gradual eastward into the Atlantic, then subsequently reorganized westward into the Pacific as new drainage routes opened up during Patagonian Ice Sheet deglaciation. Coupled ocean-atmosphere model experiments using HadCM3 with an imposed freshwater surface "hosing" to simulate glacial lake drainage suggest that a negative salinity anomaly was advected south around Cape Horn, resulting in brief but significant impacts on coastal ocean vertical mixing and regional climate. PMID:26869235

  19. NGRIP temperature reconstruction from 10 to 120 kyr b2k

    NASA Astrophysics Data System (ADS)

    Kindler, P.; Guillevic, M.; Baumgartner, M.; Schwander, J.; Landais, A.; Leuenberger, M.

    2013-07-01

    In order to reconstruct Greenland NGRIP temperature, measurements of δ15N from the beginning of the Holocene to Dansgaard-Oeschger (DO) event 8 have been performed. Together with previously measured and mostly published δ15N data, we are now able to present for the first time a NGRIP temperature reconstruction for the whole last glacial period (beginning of the Holocene back to 120 kyr) including every DO event based on δ15N isotope measurements using a firn densification and heat diffusion model. The detected temperature rises at DO events range from 5 °C (DO 25) up to 16.5 °C (DO 11), ± 3 °C. To bring measured and modelled data into agreement, we had to reduce the accumulation rate given by the ss09sea06bm time scale in some periods significantly, especially during the last glacial maximum (LGM). A comparison between reconstructed temperature and δ18Oice data confirms that the isotopic composition of the stadial was strongly influenced by seasonality. We continuously calculated α (δ18Oice to temperature sensitivity) on a 10 kyr running time window. α variations show an anticorrelation with obliquity, in agreement with a simple Rayleigh distillation model, and moreover seem to be influenced by Northern Hemisphere ice sheet volume.

  20. Variations in the geomagnetic dipole moment during the Holocene and the past 50 kyr

    NASA Astrophysics Data System (ADS)

    Knudsen, Mads Faurschou; Riisager, Peter; Donadini, Fabio; Snowball, Ian; Muscheler, Raimund; Korhonen, Kimmo; Pesonen, Lauri J.

    2008-07-01

    All absolute paleointensity data published in peer-reviewed journals were recently compiled in the GEOMAGIA50 database. Based on the information in GEOMAGIA50, we reconstruct variations in the geomagnetic dipole moment over the past 50 kyr, with a focus on the Holocene period. A running-window approach is used to determine the axial dipole moment that provides the optimal least-squares fit to the paleointensity data, whereas associated error estimates are constrained using a bootstrap procedure. We subsequently compare the reconstruction from this study with previous reconstructions of the geomagnetic dipole moment, including those based on cosmogenic radionuclides ( 10Be and 14C). This comparison generally lends support to the axial dipole moments obtained in this study. Our reconstruction shows that the evolution of the dipole moment was highly dynamic, and the recently observed rates of change (5% per century) do not appear unique. We observe no apparent link between the occurrence of archeomagnetic jerks and changes in the geomagnetic dipole moment, suggesting that archeomagnetic jerks most likely represent drastic changes in the orientation of the geomagnetic dipole axis or periods characterized by large secular variation of the non-dipole field. This study also shows that the Holocene geomagnetic dipole moment was high compared to that of the preceding ˜ 40 kyr, and that ˜ 4 · 10 22 Am 2 appears to represent a critical threshold below which geomagnetic excursions and reversals occur.

  1. 100 Kyr Old Desert of Western India: Morhodynamics and Environmental Significance

    NASA Astrophysics Data System (ADS)

    Bhatt, N.

    2012-04-01

    The Late Quaternary oscillations in sea levels and resultant changes in the coastal environment have remained a popular aspect of study amongst the earthscientists and archaeologists. The Saurashtra peninsula of the western India that lies on the southwestern side of the Thar Desert, has archived a fascinating record of such environmental changes since last interglacial (~120kyr) in the form of a fossil desert exhibiting various aeolian land forms constituted by the sand largely derived from the coastal areas due to an oscillatory sea level change. A variety of dunes viz., coastal transverse, parabolic, longitudinal, barchans, climbing and falling dunes along with valley fills and sand sheets have been mapped. Being biogenic calcium carbonate rich, the sands have been lithified under the influence of an increase in moisture and thus the dune and bed forms are preserved in its best shape. The intense aeolian activities are also evident in the form of desert varnish on rocky outcrops. The sequence comprises smaller climate perturbations in the form of stabilization, erosion and karstification of older dunes and deposition of fluvial sediments in between. The paper deals with the mode of occurrence, response of sediments to wind dynamics and palaeo topography, internal structures, later modifications of sediments and significance of the geochronologically constrained aeolianites in understanding of environmental changes since 100kyr in the region.

  2. Grain-size based sea-level reconstruction in the south Bohai Sea during the past 135 kyr

    NASA Astrophysics Data System (ADS)

    Yi, Liang; Chen, Yanping

    2013-04-01

    marine surface and core samples, and to quantitatively reconstruct sea-level variation since the late Pleistocene in the south Bohai Sea, China. New insights into regional relative sea-level changes since the late Pleistocene are obtained (Yi et al., 2012): (1) The grain size of surface and core samples can be mathematically partitioned using the Weibull distribution into four components. These four components with differing modal sizes and percentages could be interpreted as a long-term suspension component, which only settles under low turbulence conditions, sortable silt and very fine sand components transported by suspension during greater turbulence and bedload transport component, respectively. (2) Through regression and rigorous verification techniques, the reference water level could be reconstructed from sediment grain size. The reconstruction quantitatively extends the regional relative sea-level history to the late Pleistocene, providing a comparatively long dataset to evaluate regional sea-level variability. (3) We find no evidence of a sea-level high stand during MIS3 but rather a substantial regression during 70-30 cal kyr BP and potentially exposed land during 38-20 cal kyr BP. These results for the south Bohai Sea are in good agreement with published global sea-level records for the late Pleistocene, implying similarities between local and global sea-level patterns. Therefore, it is concluded that grain-size based sea-level reconstruction provide results that are comparable to other reconstruction methods and demonstrates great potential application for future works. (The data was shared on http://hurricane.ncdc.noaa.gov/) References Chappell, J., Omura, A., Esat, T., McCulloch, M., Pandolfi, J., Ota, Y., Pillans, B., 1996. Reconciliation of late Quaternary sea levels derived from coral terraces at Huon Peninsula with deep sea oxygen isotope records. Earth and Planetary Science Letters 141, 227-236. Chappell, J., Shackleton, N.J., 1986. Oxygen isotopes

  3. Changes in chemical weathering intensity in the Himalayas over the past 30 kyr

    NASA Astrophysics Data System (ADS)

    Dosseto, A.; Vigier, N.

    2010-12-01

    Chemical weathering and climate are tightly coupled and in an era of rapid climate change, it is critical to be able to understand how erosion processes respond to climate variability. A possible approach is to investigate sedimentary records and study how in the past, sediments have recorded the response of catchment erosion to climate variability. In this study, we have measured lithium (Li) isotopes in sediments deposited on river terraces in the upper Ganges (Alaknanda) and Yamuna basins (India) with deposition ages ranging from 0 to 26 kyr. Li isotopes fractionate during chemical weathering and could potentially give us some insights on past variations of weathering intensity. We find that Li isotope composition vary between -1.5 and 2 ‰. Before 14 kyr ago, sediments exhibit negative values followed a sharp increase to positive values between 11 and 14 kyr ago. This increase in could be explained by (i) an increase in average temperature, where a higher temperature of equilibration between water and precipitating clays results in higher Li isotope ratios; (ii) a change in mineralogy, as the type and crystallinity of clays will fact the isotopic composition; or (iii) a decrease in chemical weathering intensity, as Li isotope ratios are believed to decrease in sediments/soils with increasing weathering intensity (Rudnick et al., 2004). Interestingly, this period of shift in Li isotope composition also corresponds to an intensification of monsoon rainfall. If the change in Li isotope compositions is the result of a decrease of chemical weathering intensity, this would imply that despite of more intense rainfall, weathering has been less intense during the Holocene. This could be explained as greater rainfall will generate more erosion and sediments are likely to spend less time in the basin, thus the amount of time available for weathering is reduced. This would imply that chemical weathering is mostly controlled by the erosive power of greater rainfall over

  4. Geomagnetic intensity variations for the past 6 kyr: New archeointensity results from China

    NASA Astrophysics Data System (ADS)

    Cai, S.; Tauxe, L.; Deng, C.; Zhu, R.

    2013-05-01

    The geomagnetic field is a window to the motion of the fluid outer core of Earth, which has varied over a broad range of timescales. To understand this variation over periods of thousands of years we rely entirely on measurements of remanent magnetization from geological and archeological materials. Archeomagnetic data from Eastern Asia, however, are sparse, particularly those that would be widely regarded as reliable. The longevity of Chinese civilization and the abundant nature of archeological artifacts make archeomagnetic studies within China an important tool for filling in many gaps in our current data sets. In this study, have we carried out paleointensity experiments on 969 specimens, which includes pottery fragments, burnt earth and slags, collected from Shandong, Zhejiang and Hebei Province in China and span the last 6 kyr. Approximately half of the samples yielded results that passed strict data selection and give high-fidelity paleointensities. The virtual axial dipoles moments (VADMs) of our sites range from 4 to 12e22Am2. Our data from the last 2.5 kyr are in good agreement with the ARCH3k.1 model, but deviate at times from the CALS10k.1b model, which is likely due to differences in the data used for these models. At ages older than 3ka, where only the CALS10k.1b model is available for comparison, our data deviate significantly from the model. At ca. 1350 BCE our results suggest a paleointensity high of 12E22Am2, which drops to a low of 4E22Am2 by 2250 BCE. This rapid (less than 1000 year) three-fold change in the paleointensity may have important implications for the dynamics of core flow at this time.

  5. Geomagnetic intensity variations for the past 8 kyr: New archaeointensity results from Eastern China

    NASA Astrophysics Data System (ADS)

    Cai, Shuhui; Tauxe, Lisa; Deng, Chenglong; Pan, Yongxin; Jin, Guiyun; Zheng, Jianming; Xie, Fei; Qin, Huafeng; Zhu, Rixiang

    2014-04-01

    In this study, we have carried out paleointensity experiments on 918 specimens spanning the last ∼7 kyr, including pottery fragments, baked clay and slag, collected from Shandong, Liaoning, Zhejiang and Hebei Provinces in China. Approximately half of the specimens yielded results that passed strict data selection criteria and give high-fidelity paleointensities. The virtual axial dipole moments (VADMs) of our sites range from ∼2×1022 to ∼13×1022 Am. At ∼2250 BCE our results suggest a paleointensity low of ∼2×1022 Am, which increases to a high of ∼13×1022 Am by ∼1300 BCE. This rapid (less than 1000 yrs) six-fold change in the paleointensity may have important implications for the dynamics of core flow at this time. Our data from the last ∼3 kyr are generally in good agreement with the ARCH3k.1 model, but deviate significantly at certain time periods from the CALS3k.4 and CALS10k.1b model, which is likely due to differences in the data used to constrain these models. At ages older than ∼3 ka, where only the CALS10k.1b model is available for comparison, our data deviate significantly from the model. Combining our new results with the published data from China and Japan, we provide greatly improved constraints for the regional model of Eastern Asia. When comparing the variations of geomagnetic field in three global representative areas of Eastern Asia, the Middle East and Southern Europe, a common general trend of sinusoidal variations since ∼8 ka is shown, likely dominated by the dipole component. However, significant disparities are revealed as well, which we attribute to non-dipolar components caused by movement of magnetic flux patches at the core-mantle boundary.

  6. BP details new recycling process

    SciTech Connect

    Chynoweth, E.

    1992-04-22

    BP Chemicals (London) is developing a preprocessing thermal cracker for recycling mixed plastics waste as an add-on to existing petrochemicals or refinery complexes. The company is currently discussing the technology with other plastic producers to {open_quotes}move forward together,{close_quotes} say Serge Huybrechts, branch R&D manager at BP Chemicals at Grangemouth. He says the unit would be able to deliver an intermediate feed of similar composition to chemical naphtha for chemical or refinery processes including steam cracking, catalytic cracking, coking, gasification, and hydrocracking. In comparison, pyrolysis gives a range of products, from light gas to heavy aromatics, that are difficult to integrate into existing equipment.

  7. Geomagnetic field variations during the last 400 kyr in the western equatorial Pacific: Paleointensity-inclination correlation revisited

    NASA Astrophysics Data System (ADS)

    Yamazaki, Toshitsugu; Kanamatsu, Toshiya; Mizuno, Sakiko; Hokanishi, Natsumi; Gaffar, Eddy Z.

    2008-10-01

    A paleomagnetic study was conducted on four piston cores newly obtained from the West Caroline Basin in the western equatorial Pacific in order to investigate variations in paleointensity and inclination during the last 400 kyr. An inclination-intensity correlation was previously reported in this region using giant piston cores, but the quality of the paleomagnetic data of the younger end, the last ca. 300 kyr, was needed to be checked because the upper part of the giant piston cores could suffer from perturbation by oversampling. Age control is based on the oxygen-isotope ratios for one core and inter-core correlation using relative paleointensity for other cores. Stacked curves of paleointensity and inclination were constructed from the four cores. It was confirmed that variations on the order of 104 to 105 years occur in inclination as well as paleointensity. A cross-correlation analysis showed that significant in-phase correlation occurs between intensity and inclination for periods longer than about 25 kyr, and power spectra of both paleointensity and inclination variations have peaks at ~100 kyr periods. The regional paleointensity stack with higher resolution than the Sint-800 stack (Guyodo and Valet, 1999) should be useful for paleointensity-assisted chronostratigraphy.

  8. Geomagnetic field variations during the last 400 kyr in the western equatorial Pacific: Paleointensity-inclination correlation revisited

    NASA Astrophysics Data System (ADS)

    Yamazaki, T.; Kanamatsu, T.; Mizuno, S.; Hokanishi, N.; Gaffar, E. Z.

    2008-12-01

    A paleomagnetic study was conducted on four piston cores newly obtained from the West Caroline Basin in the western equatorial Pacific in order to investigate variations in paleointensity and inclination during the last 400 kyr. An inclination-intensity correlation was previously reported in this region using giant piston cores, but the quality of the paleomagnetic data of the younger end, the last ca. 300 kyr, was needed to be checked because the upper part of the giant piston cores could suffer from perturbation by oversampling. Age control is based on the oxygen-isotope ratios for one core and inter-core correlation using relative paleointensity for other cores. The mean inclinations of the four cores show negative inclination anomalies ranging from -5.2 to -11.2 degree. The western equatorial Pacific is documented as a region of a large negative inclination anomalies, and the observed values are comparable to those expected from the time-averaged field (TAF) models [Johnson and Constable, 1997; Hatakeyama and Kono, 2002]. Stacked curves of paleointensity and inclination were constructed from the four cores. It was confirmed that geomagnetic variations on the order of 10 to 100 kyrs occur in inclination as well as paleointensity. A cross-correlation analysis showed that significant in-phase correlation occurs between intensity and inclination for periods longer than about 25 kyr, and power spectra of both paleointensity and inclination variations have peaks at ~100 kyr periods. The regional paleointensity stack with higher resolution than the Sint-800 stack [Guyodo and Valet, 1999] should be useful for paleointensity-assisted chronostratigraphy.

  9. Biogenic sedimentation beneath the California Current system for the past 30 kyr and its paleoceanographic significance

    USGS Publications Warehouse

    Gardner, J.V.; Dean, W.E.; Dartnell, P.

    1997-01-01

    A north-south transect of 17 cores was constructed along the eastern boundary of the California Current system from 33?? to 42?? N to investigate the changes in biogenic sedimentation over the past 30 kyr. Percentages and mass accumulation rates of CaCO3, Corg, and biogenic opal were assembled at 500 to 1000 years/sample to provide relatively high resolution. Time-space maps reveal a complex pattern of changes that do not follow a simple glacial-interglacial two-mode model. Biogenic sedimentation shows responses that are sometimes time-transgressive and sometimes coeval, and most of the responses show more consistency within a limited geographic area than any temporal consistency. Reconstructed conditions during late oxygen isotope stage 3 were more like early Holocene conditions than any other time during the last 30 kyr. Coastal upwelling and productivity during oxygen isotope stage 3 were relatively strong along the central California margin but were weak along the northern California margin. Precipitation increased during the last glacial interval in the central California region, and the waters of the southern California margin had relatively low productivity. Productivity on the southern Oregon margin was relatively low at the beginning of the last glacial interval, but by about 20 ka, productivity in this area significantly increased. This change suggests that the center of the divergence of the West Wind Drift shifted south at this time. The end of the last glacial interval was characterized by increased productivity in the southern California margin and increased upwelling along the central California margin but upwelling remained weak along the northern California margin. A sudden (<300 years) decrease in CaCO3, Corg, and biogenic opal occurred at 13 ka. The changes suggest a major reorientation of the atmospheric circulation in the North Pacific and western North America and the establishment of a strong seasonality in the central California region. A

  10. Circum-Antarctic Nd isotope variability during the last 30 kyrs

    NASA Astrophysics Data System (ADS)

    Struve, T.; van de Flierdt, T.; Hines, S. K.; Burke, A.; Adkins, J. F.; Robinson, L. F.; Crocket, K. C.; Auro, M. E.

    2014-12-01

    The modern Southern Ocean is a key area for the global ocean circulation as wind-driven mixing, upwelling and redistribution of water masses in the Antarctic Circumpolar Current (ACC) all have a significant impact on the properties and flow patterns of global water masses. It has been suggested that the Southern Ocean plays a critical role in oceanographic and climatic changes observed on glacial-interglacial timescales, in particular with respect to carbon sequestration between the deep ocean and the atmosphere. For the purpose of unravelling Southern Ocean water mass composition at intermediate depth during the past 30 kyrs, we here utilise the Nd isotopic composition of the aragonitic skeletons of solitary deep-sea corals. These corals were collected from two locations, the Drake Passage and the area south of Tasmania, and from water depths between 300 and 1750 m. Modern coral specimen were calibrated against nearby seawater. Neodymium was collected from the wash fraction of the anion-exchange column, which represents the first step in preparing samples for precise U-series dating. Subsequent Nd separation utilised a two-stage ion chromatography (RE-spec/cation exchange and Ln-spec resins). Isotopic analyses were performed as NdO+ on a Triton TIMS using a TaF5 activator on W filaments yielding 2σ external reproducibilities of ~20 ppm. (Sub-) millenial scale deep-sea coral neodymium isotope results from the Drake Passage suggest that the modern homogenous ACC neodymium isotopic composition of ɛNd≈ -8 is a very recent feature. During the past 30 kyrs Nd isotope variability on the order of two epsilon units are observed at intermediate water depths as well as repeated changes in water column stratification. We will discuss our new results in the context of other Southern Ocean records, as well as preliminary Nd isotope data from glacial to deglacial deep-sea corals from south of Tasmania in order to constrain the last glacial to deglacial circum-Antarctic Nd

  11. Environmental changes, climate and anthropogenic impact in south-east Tunisia during the last 8 kyr

    NASA Astrophysics Data System (ADS)

    Jaouadi, Sahbi; Lebreton, Vincent; Bout-Roumazeilles, Viviane; Siani, Giuseppe; Lakhdar, Rached; Boussoffara, Ridha; Dezileau, Laurent; Kallel, Nejib; Mannai-Tayech, Beya; Combourieu-Nebout, Nathalie

    2016-06-01

    Pollen and clay mineralogical analyses of a Holocene sequence from Sebkha Boujmel (southern Tunisia) trace the climatic and environmental dynamics in the lower arid bioclimatic zone over the last 8000 years. During the mid- to late Holocene transition, between ca. 8 and 3 ka BP, a succession of five wet-dry oscillations is recorded. An intense arid event occurs between ca. 5.7 and 4.6 ka BP. This episode marks the onset of a long-term aridification trend with a progressive retreat of Mediterranean woody xerophytic vegetation and of grass steppes. It ends with the establishment of pre-desert ecosystems around 3 ka BP. The millennial-scale climate change recorded in the data from Sebkha Boujmel is consistent with records from the south and east Mediterranean, as well as with climatic records from the desert region for the end of the African Humid Period (AHP). Eight centennial climatic events are recorded at Sebkha Boujmel and these are contemporary with those recorded in the Mediterranean and in the Sahara. They indicate a clear coupling between the southern Mediterranean and the Sahara before 3 ka BP. The event at 4.2 ka BP is not evidenced and the link between events recorded in Sebkha Boujmel and the North Atlantic cooling events is clearer from ca. 3 ka BP onwards. These variations indicate the importance of climatic determinism in the structuring of landscapes, with the establishment of the arid climatic conditions of the late Holocene. It is only from ca. 3 ka BP onwards that the dynamic of plant associations is modified by both human activity and climatic variability. The climatic episodes identified during the historic period indicate strong regionalisation related to the differential impact of the North Atlantic Oscillation (NAO) and the Mediterranean Oscillation (MO) on the Mediterranean Basin. The local human impact on regional ecosystems is recorded in the form of episodes of intensification of pastoral and/or agricultural activities. The development of

  12. Palaeoecology of a 3-kyr biosedimentary record of a coral reef-supporting carbonate shelf

    NASA Astrophysics Data System (ADS)

    Almeida, Carine M.; Barbosa, Catia Fernandes; Cordeiro, Renato C.; Seoane, José Carlos S.; Fermino, Gerson M.; Silva, Patricia O.; Turcq, Bruno J.

    2013-11-01

    This study assesses the 3-kyr paleoecology and sedimentary evolution of the Abrolhos carbonate shelf, Bahia, Brazil, using a two-meter-long core collected in a carbonate muddy sediment. The paleoecology was based on the distribution of benthic foraminifer functional groups associated with grain size, total organic carbon (TOC), total nitrogen (TN), C/N and δ13C. The results identified three biosedimentary units showing that symbiont-bearing foraminifers (Peneroplis and Archaias) decrease in abundance. However, other small taxa (Miliolinella and Cornuspira) and stress-tolerant genera (Bolivina, Elphidium and Ammonia) increase in abundance toward the core top. Grain size decreases toward the top of the core, suggesting a weakening of hydrodynamic winnowing toward recent time. The TOC and TN concentrations increase, and the C/N ratios decrease, suggesting an increase of marine productivity from nearby goblet-shaped structures called "chapeirões". Changes in the benthic foraminifer community can be linked to the sedimentological and organic matter input, which are the result of climatic and oceanographic variations at different spatial and time scales, thus illustrating reduced potential to support symbiont-bearing foraminifer communities to the end of the Holocene.

  13. Temperature reconstruction from 10 to 120 kyr b2k from the NGRIP ice core

    NASA Astrophysics Data System (ADS)

    Kindler, P.; Guillevic, M.; Baumgartner, M.; Schwander, J.; Landais, A.; Leuenberger, M.; Spahni, R.; Capron, E.; Chappellaz, J.

    2014-04-01

    In order to reconstruct the temperature of the North Greenland Ice Core Project (NGRIP) site, new measurements of δ15N have been performed covering the time period from the beginning of the Holocene to Dansgaard-Oeschger (DO) event 8. Together with previously measured and mostly published δ15N data, we present for the first time a NGRIP temperature reconstruction for the whole last glacial period from 10 to 120 kyr b2k (thousand years before 2000 AD) including every DO event based on δ15N isotope measurements combined with a firn densification and heat diffusion model. The detected temperature rises at the onset of DO events range from 5 °C (DO 25) up to 16.5 °C (DO 11) with an uncertainty of ±3 °C. To bring measured and modelled data into agreement, we had to reduce the accumulation rate given by the NGRIP ss09sea06bm timescale in some periods by 30 to 35%, especially during the last glacial maximum. A comparison between reconstructed temperature and δ18Oice data confirms that the isotopic composition of the stadial was strongly influenced by seasonality. We evidence an anticorrelation between the variations of the δ18Oice sensitivity to temperature (referred to as α) and obliquity in agreement with a simple Rayleigh distillation model. Finally, we suggest that α might be influenced by the Northern Hemisphere ice sheet volume.

  14. Progress in the reconstruction of Quaternary climate dynamics in the Northwest Pacific: A new modern analogue reference dataset and its application to the 430-kyr pollen record from Lake Biwa

    NASA Astrophysics Data System (ADS)

    Tarasov, Pavel E.; Nakagawa, Takeshi; Demske, Dieter; Österle, Hermann; Igarashi, Yaeko; Kitagawa, Junko; Mokhova, Lyudmila; Bazarova, Valentina; Okuda, Masaaki; Gotanda, Katsuya; Miyoshi, Norio; Fujiki, Toshiyuki; Takemura, Keiji; Yonenobu, Hitoshi; Fleck, Andreas

    2011-09-01

    This study presents a newly compiled dataset of modern pollen and climate data from 798 sites across Japan and the Russian Far East. This comprehensive reference dataset combined with the modern analogue technique (MAT) provides a powerful tool for pollen-based reconstruction of the Quaternary Northwest Pacific climate. Pollen-derived reconstruction of the modern climate at the reference pollen-sampling sites matches well with the estimated modern climate values ( R2 values vary between 0.79 and 0.95, and RMSEP values vary between 5.8 and 9.7% of the modern climatic range for all nine tested variables). The successful testing of the method encourages its application to the fossil pollen records. We used a coarse-resolution pollen record from Lake Biwa to reconstruct glacial-interglacial climate dynamics in central Japan since ~ 438 kyr and compared it to the earlier reconstruction based on a less representative reference dataset. The current and earlier results consistently demonstrate that the coldest glacial intervals experienced pronounced cooling in winter and moderate cooling in summer, supporting the growth of cool mixed forest (COMX) where warm mixed forest (WAMX) predominates today. During the last glacial, maximum (~ 24 kyr BP) mean temperatures of the coldest (MTCO) and warmest (MTWA) month were about - 13 °C (RMSEP = 2.34 °C) and 21 °C (RMSEP = 1.66 °C) respectively, and annual precipitation (PANN) was about 800 mm (RMSEP = 158.06 mm). During the thermal optimums of the interglacial intervals, the temperatures of the coldest and warmest month were above 0 °C and 25 °C respectively, leading to the reconstruction of WAMX and temperate conifer forest (TECO). Although both these vegetation types grow in the southern part of Japan today, WAMX requires warmer space. The presence of WAMX during marine isotope stages (MIS) 11 and 1, and its absence during MIS 9 and MIS 5 contradict the marine isotope and Antarctic ice records, suggesting that the latter

  15. Time evolution of the mineralogical composition of Mississippi Valley loess over the last 10 kyr: Climate and geochemical modeling

    NASA Astrophysics Data System (ADS)

    Goddéris, Yves; Williams, Jennifer Z.; Schott, Jacques; Pollard, Dave; Brantley, Susan L.

    2010-11-01

    Anthropogenic and natural climate change affect processes in the atmosphere, biosphere, hydrosphere, and pedosphere. The impact of climate on soil evolution has not been well-explored, largely due to slow rates and the complexity of coupled processes that must be observed and simulated. The rates of mineral weathering in loess deposited 23 kyr ago and experiencing soil formation for 13 kyr are explored here using the WITCH model for weathering and the GENESIS model for climate simulation. The WITCH model, which uses rigorous kinetic parameters and laws with provision for the effect on rates of deviation from equilibrium, can successfully simulate the depletion profiles in the soil for dolomite and albite if soil CO 2 is assumed to rise over the last 10 kyr up to about 30-40× the present atmospheric pressure, and if the solubility product of the Ca-smectite is assumed equal to that of an Fe(III)-rich Ca-montmorillonite. Such simulations document that dissolution behavior for silicates and carbonates are strongly coupled through pH, and for Ca-smectite and feldspars through dissolved silica. Such coupling is not incorporated in simple geometric and analytical models describing mineral dissolution, and therefore probably contributes to the long-standing observation of discrepancies among laboratory and field mineral dissolution rates.

  16. Indian Ocean sea surface temperatures and vegetation change in SE African tropics during the past 800 Kyr

    NASA Astrophysics Data System (ADS)

    Castaneda, I. S.; Caley, T.; Dupont, L. M.; Kim, J.; Sinninghe Damsté, J. S.; Malaize, B.; Caillon, N.; Giraudeau, J.; Schouten, S.

    2011-12-01

    Presently, few vegetation records exist for the region of SE Africa that span multiple glacial-interglacial cycles yet such records can provide important insights into past continental climatic variability. Here, we examine vegetation and SST change in SE Africa from a ~800 Kyr sediment core (MD96-2048) collected from the continental shelf near the Limpopo River, which drains Botswana, southern Mozambique and northern South Africa. The coring site is located at 26°S and is likely situated outside of the influence of the Intertropical Convergence Zone (ITCZ). We find that plant leaf wax (n-alkane) carbon isotope (δ13C) and pollen records are in good agreement and exhibit pronounced glacial-interglacial variability. Relatively enriched n-alkane δ13C values are noted during glacial periods and reflect increased inputs of C4 vegetation, coincident with higher percentages of Poaceae (grass) pollen and cooler SST. Conversely, during interglacials, relatively depleted n-alkane δ13C values are noted and coincide with higher percentages of woodland and forest pollen and warmer SST. Previous studies of this core demonstrated that SST and salinity records based on both inorganic (δ18O and Mg/Ca) and organic (Uk'37 and TEX86) geochemical proxies display strong obliquity-driven 41-Kyr cycles, that are nearly in phase with annual mean insolation and air temperature at the high southern latitudes (Caley et al., 2011). Likewise, the n-alkane δ13C record was found to contain a strong 41-Kyr obliquity cycle. Interestingly, a strong 23-Kyr precession cycle is also present in the n-alkane δ13C record, that is nearly in phase with precession minima. Our results therefore suggest that vegetation change in this region reflects the dual influence of both southern and northern high-latitude climate forcings. In contrast to the Lake Malawi (East Africa) pollen record, which indicates a treeless landscape and extreme aridity from 105-90-Kyr (Beuning et al., 2011), the pollen record of

  17. Sea surface temperature reconstructions over the last 70 kyr off Portugal: Biomarker data and regional modeling

    NASA Astrophysics Data System (ADS)

    Darfeuil, Sophie; Ménot, Guillemette; Giraud, Xavier; Rostek, Frauke; Tachikawa, Kazuyo; Garcia, Marta; Bard, Édouard

    2016-01-01

    This study aims at providing robust temperature reconstructions for a key oceanographic setting in the North Atlantic and at understanding the nature of the temperature signal recorded by the two biomarkers Uk'37 and TEX86, considering season and depth of production. To do so, high-resolution signals of Uk'37 and TEX86 are determined for the last 70 kyr for core MD95-2042, located off Portugal. Signals of Uk'37 and TEX86 present a tight correlation, demonstrating a dominant temperature effect. Uk'37 signals correspond well to the annual mean sea surface temperature (SST), whereas TEXH86-derived temperatures are 5.6°C higher, which is unrealistically warm for this area. Unsuitable TEX86 global linear calibrations on the Iberian Margin may suggest a possible occurrence of archaeal communities with specific temperature response. To assess the impact of different season or depth of production of the biomarkers on the recorded temperature in the sediment, modeled temperature proxies (Tproxies) are introduced in a Regional Oceanic Modeling System and tested for different seasons (annual/summer/winter) and depths (surface and 0-200 m) of production for three climate modes (Present Day (PD), Last Glacial Maximum (LGM), and Heinrich Stadials (HS)). Similar temperature amplitudes between climate modes are found at MD95-2042 core site for observations, for both biomarkers, and for modeled annual surface production Tproxy: 5.5-7°C for ΔT(PD-LGM) and 3-4°C for ΔT(LGM-HS). Therefore, we propose a new TEXH86 regional calibration to reconstruct present and past annual mean SSTs on the Iberian Margin.

  18. Sea surface and subsurface circulation dynamics off equatorial Peru during the last ~17 kyr

    NASA Astrophysics Data System (ADS)

    Nürnberg, Dirk; Böschen, Tebke; Doering, Kristin; Mollier-Vogel, Elfi; Raddatz, Jacek; Schneider, Ralph

    2015-07-01

    The complex deglacial to Holocene oceanographic development in the Gulf of Guayaquil (Eastern Equatorial Pacific) is reconstructed for sea surface and subsurface ocean levels from (isotope) geochemical proxies based on marine sediment cores. At sea surface, southern sourced Cold Coastal Water and tropical Equatorial Surface Water/Tropical Surface Water are intimately related. In particular since ~10 ka, independent sea surface temperature proxies capturing different seasons emphasize the growing seasonal contrast in the Gulf of Guayaquil, which is in contrast to ocean areas further offshore. Cold Coastal Water became rapidly present in the Gulf of Guayaquil during the austral winter season in line with the strengthening of the Southeast Trades, while coastal upwelling off Peru gradually intensified and expanded northward in response to a seasonally changing atmospheric circulation pattern affecting the core locations intensively since 4 ka BP. Equatorial Surface Water, instead, was displaced and Tropical Surface Water moved northward together with the Equatorial Front. At subsurface, the presence of Equatorial Under Current-sourced Equatorial Subsurface Water was continuously growing, prominently since ~10-8 ka B.P. During Heinrich Stadial 1 and large parts of the Bølling/Allerød, and similarly during short Holocene time intervals at ~5.1-4 ka B.P. and ~1.5-0.5 ka B.P., the admixture of Equatorial Subsurface Water was reduced in response to both short-term weakening of Equatorial Under Current strength from the northwest and emplacement by tropical Equatorial Surface Water, considerably warming the uppermost ocean layers.

  19. Development and comparison of layer-counted chronologies from the WAIS Divide and EDML ice cores, Antarctica, over the last glacial transition (10-15 ka BP)

    NASA Astrophysics Data System (ADS)

    Winstrup, Mai; Vinther, Bo M.; Sigl, Michael; McConnell, Joe; Svensson, Anders M.; Wegner, Anna

    2014-05-01

    Some ice cores can be very precisely dated far back in time by counting the annual layering in various impurity records, and the most robust chronologies rely on the parallel analysis of annual features expressed in multiple data sets. Layer-counted Antarctic ice-core chronologies are now emerging: Multi-parameter layer counting has been carried out for the Holocene and late glacial section of the EDML ice core, Dronning Maud Land (Vinther et al., in prep.), and a layer-counted timescale for the WAIS Divide core, West Antarctica, reaching back to 30 kyr BP, was recently completed (WDC06A-7; WAIS Divide Members, 2013). Beyond 24 kyr b2k, the main part of this timescale relies solely on electrical measurements on the core. We here use a novel statistical framework for automated annual layer counting (Winstrup et al., 2012) to extend and improve the two chronologies from EDML and WAIS Divide. Using this method, we have 1) revised the multi-parameter layer counts for the EDML ice core back to 15 kyr BP, and 2) employed high-resolution chemistry measurements from WAIS Divide to obtain a layer-counted multi-parameter timescale for WAIS Divide over the same period (10-15 ka b2k). The EDML and WAIS Divide ice cores have been tightly synchronized using volcanic marker horizons, thus allowing a detailed comparison of annual layer counts between tie points using the various approaches. The corresponding timescales are compared also to the EDML timescale from the flow-model based AICC2012 chronology (Veres, 2012). For the Holocene section of the period (10-11.7 ka BP), all timescales show very good agreement. The peculiar accumulation anomaly observed in the WAIS Divide layer thicknesses in the beginning of the Holocene is confirmed by the multi-parameter layer counts from both WAIS Divide and EDML. The transition into the Holocene has generally proven a difficult period to date by annual layer counting, since the appearance of an annual layer in the various records can change

  20. Dust fertilization of biological productivity in the Subarctic North Pacific during the last 150 kyr

    NASA Astrophysics Data System (ADS)

    Serno, S.; Winckler, G.; Anderson, R. F.; Ren, H. A.; Hayes, C.; Machalett, B.; Gersonde, R.; Haug, G. H.

    2012-12-01

    The Subarctic North Pacific (SNP) is one of three principal High Nutrient Low Chlorophyll regions of the modern ocean characterized by an excess pool of macronutrients not completely consumed during the annual biogeochemical cycle. In the last 25 years, a number of studies from the SNP have proposed that eolian dust input of iron from East Asian arid regions is the major limiting factor for primary and export production. In recent years, additional iron sources have been suggested for regulating phytoplankton growth in the SNP, including mobilized continental margin material, ice-rafted debris, volcanic material, turbulent mixing and upwelling. We will present results of a multi-proxy approach from INOPEX core SO202-7-6 and ODP site 882 from the Detroit Seamount in the northwest SNP covering the last 30 and 150 kyr, respectively. We will compare 230Th-normalized dust flux records based on 4He, 232Th and REE, grain size distributions and 230Th-normalized fluxes of opal, total organic carbon, carbonate and biogenic barium and Pa/Th ratios as productivity proxies for INOPEX core SO202-7-6. A new high resolution record of dust fluxes based on 4He will be compared with published productivity proxy records from ODP site 882. A spatial survey of core-top sediments covering the whole SNP indicates that the efficiency of diatom export out of the euphotic zone, as defined by the ratio of opal flux in the core-top sediments to the maximum annual surface water silicate concentration during the winter months, is positively correlated with dust fluxes, possibly as a result of either dust fertilization of primary production or a diatom ballasting effect by dust particles. Preliminary results from INOPEX core SO202-7-6, on the other hand, indicate no correlation between dust flux and biological productivity during the last deglaciation. We will discuss possible explanations for these observations to answer the question if the dust fertilization hypothesis proposed by John Martin

  1. Volcanic synchronization of Dome Fuji and Dome C Antarctic deep ice cores over the past 216 kyr

    NASA Astrophysics Data System (ADS)

    Fujita, S.; Parrenin, F.; Severi, M.; Motoyama, H.; Wolff, E.

    2015-02-01

    Two deep ice cores, Dome Fuji (DF) and EPICA Dome C (EDC), drilled at remote dome summits in Antarctica, were synchronized to better understand their chronology. A total of 1401 volcanic tie points were identified covering the past 216 kyr. DFO2006, the chronology for the DF core characterized by strong constraining by the O2/N2 age markers, was compared with AICC2012, the chronology for 5 cores including the EDC core, and characterized by glaciological approaches combining ice flow modelling with various age markers. The age gaps between the two chronologies are within 2 kyr, except at Marine Isotope Stage (MIS) 5. DFO2006 gives ages older than AICC2012, with peak values of the gap of 4.5 and 3.1 kyr at MIS 5d and MIS 5b, respectively. Accordingly, ratios of duration DFO2006/AICC2012 are 85% at a period from the late stage of MIS 6 to MIS 5d and 114% at a period from MIS 5d to 5b. We then compared the DFO2006 with another chronology of the DF core, DFGT2006, characterized by glaciological approaches with weaker constraining by age markers. Features of the DFO2006/DFGT2006 age gaps are very similar to those of the DFO2006/AICC2012 age gaps. This fact lead us to hypothesize that a cause of the systematic DFO2006/AICC2012 age gaps at MIS 5 are associated with differences in the dating approaches. Besides, ages of speleothem records from China agreed well with DFO2006 at MIS 5c and 5d but not at MIS 5b. Thus, we hypothesize at least at MIS 5c and 5d, major sources of the gaps are systematic errors in surface mass balance estimation in the glaciological approach. Compatibility of the age markers should be carefully assessed in future.

  2. Calcium isotopes in caves as a proxy for aridity: Modern calibration and application to the 8.2 kyr event

    NASA Astrophysics Data System (ADS)

    Owen, R. A.; Day, C. C.; Hu, C.-Y.; Liu, Y.-H.; Pointing, M. D.; Blättler, C. L.; Henderson, G. M.

    2016-06-01

    We present the first study of Ca isotope cycling in a natural cave system, with measurements of bedrock, dripwater and recently formed carbonate, coupled to a first stalagmite time-series spanning the 8.2 kyr event. Dripwaters at Heshang Cave (Central China; 30°27‧N, 110°25‧E) are isotopically heavy relative to the dolomite bedrock, the result of prior calcite precipitation (PCP) occurring earlier in the drip flow path. A simple Rayleigh fractionation model quantifies the extent of PCP in the modern environment at 36% Ca removal. The observed in situ calcium isotope fractionation factor between dripwater and carbonate is Δ 44 / 42 Ca = - 0.63 ± 0.03 ‰ and does not vary during the annual cycle. Measurements of speleothem carbonate spanning the 8.2 kyr event show the response of Ca isotopes to changing climate. δ44/42Ca increases by 0.35‰ at the onset of the event, coeval with changes in δ18O and Mg/Ca, and remains high for 80 yr. This change is explained by decreased rainfall leading to increased PCP; an interpretation supported by established PCP proxies (Mg/Ca, Sr/Ca and Ba/Ca). Ca isotopes indicate that PCP increased to 60% Ca removal during the event, which, from application of a simple box model, suggests mean annual rainfall decreased by approximately a third in Central China during the 8.2 kyr event. The response of Ca isotopes across this event demonstrates their potential for the assessment of past conditions, including past dripwater flow rates and rainfall.

  3. Volcanic synchronization of Dome Fuji and Dome C Antarctic deep ice cores over the past 216 kyr

    NASA Astrophysics Data System (ADS)

    Fujita, S.; Parrenin, F.; Severi, M.; Motoyama, H.; Wolff, E. W.

    2015-10-01

    Two deep ice cores, Dome Fuji (DF) and EPICA Dome C (EDC), drilled at remote dome summits in Antarctica, were volcanically synchronized to improve our understanding of their chronologies. Within the past 216 kyr, 1401 volcanic tie points have been identified. DFO2006 is the chronology for the DF core that strictly follows O2 / N2 age constraints with interpolation using an ice flow model. AICC2012 is the chronology for five cores, including the EDC core, and is characterized by glaciological approaches combining ice flow modelling with various age markers. A precise comparison between the two chronologies was performed. The age differences between them are within 2 kyr, except at Marine Isotope Stage (MIS) 5. DFO2006 gives ages older than AICC2012, with peak values of 4.5 and 3.1 kyr at MIS 5d and MIS 5b, respectively. Accordingly, the ratios of duration (AICC2012 / DFO2006) range between 1.4 at MIS 5e and 0.7 at MIS 5a. When making a comparison with accurately dated speleothem records, the age of DFO2006 agrees well at MIS 5d, while the age of AICC2012 agrees well at MIS 5b, supporting their accuracy at these stages. In addition, we found that glaciological approaches tend to give chronologies with younger ages and with longer durations than age markers suggest at MIS 5d-6. Therefore, we hypothesize that the causes of the DFO2006-AICC2012 age differences at MIS 5 are (i) overestimation in surface mass balance at around MIS 5d-6 in the glaciological approach and (ii) an error in one of the O2 / N2 age constraints by ~ 3 kyr at MIS 5b. Overall, we improved our knowledge of the timing and duration of climatic stages at MIS 5. This new understanding will be incorporated into the production of the next common age scale. Additionally, we found that the deuterium signals of ice, δDice, at DF tends to lead the one at EDC, with the DF lead being more pronounced during cold periods. The lead of DF is by +710 years (maximum) at MIS 5d, -230 years (minimum) at MIS 7a and +60

  4. A 400 kyr record of combustion oxygen demand in the western equatorial Pacific: Evidence for a precessionally forced climate response

    NASA Astrophysics Data System (ADS)

    Perks, Helen M.; Keeling, Ralph F.

    1998-02-01

    We have developed a combustion analysis technique for sediments which measures the amount of O2 consumed by the reduced species. We have measured this quantity, which we call "combustion oxygen demand (COD)," on a carbonate-rich sediment core from the Ontong-Java Plateau in the western equatorial Pacific back to marine oxygen isotope stage 11. The precision of the COD technique is ±6.3 µmol O2 g-1, which corresponds to ˜±0.0076% wt Corg, assuming oxidation of organic carbon dominates the signal. The COD time series is characterized by values which are about twice as high during glacials as during interglacials, the largest shift occurring from 401 µmol O2 g-1 in midstage 6 to 144 µmol O2 g-1 at 5e, and is coherent with the oxygen isotope curve of Globigerinoides sacculifer in the same core at the Milankovitch frequencies of 100 and 41 kyr. Pronounced variations in the 19-23 kyr band suggest that the climate of the western equatorial Pacific is sensitive to precessional forcing, a response not apparent from other records obtained in this region.

  5. Silicic Eruptions of the Past 50 kyr at the Three Sisters Volcanic Cluster

    NASA Astrophysics Data System (ADS)

    Calvert, A. T.; Hildreth, W.; Fierstein, J.

    2003-12-01

    The Three Sisters volcanic cluster in the central Oregon Cascades consists of mafic to intermediate stratovolcanoes surrounded by mafic and silicic flows and domes. The bulk of South and Middle Sister are late Pleistocene while North Sister is middle Pleistocene (Schmidt and Grunder, 2003 GSA abs.). Thick rhyolite and dacite lava flows and domes are rich in potassium, and young glaciation exposes holocrystalline groundmass textures ideal for argon geochronology. Several of these silicic flows bracket stratovolcano growth, and precise geochronology illuminates a rich basalt to rhyolite history in the cluster over the past 50 kyr. Careful step-heating 40Ar/39Ar experiments yield excellent plateau ages with radiogenic yields often above 5% on rocks as young as 20 ka. Most samples have well-determined isochrons with atmospheric (40/36 = 295.5) intercepts, although several have intercepts as low as 286. South Sister is a composite cone with an andesite/dacite base (Hodge Crest) and a young andesite summit sequence. The basal flow of the 300m-thick, youngest conformable stack of andesite lavas at the summit is 27+/-3 ka. Unconformably underlying portions date back to at least 50 ka based on ages of overlapping silicic flows. The base of Middle Sister is andesite overlain by ˜300m of olivine basalt. Some Middle Sister andesites and all basalts overlie a distinctive dacite agglutinate (20+/-2 ka) in the South/Middle Sister saddle. All Middle Sister lavas underlie a thick dacite flow (14+/-3 ka) that vented at 8500 ft (2600m) on its S flank. Dacite lava flows erupted from the Middle/North Sister saddle at 27+/-2 and 18+/-2 ka. Additionally, several >100m-thick rhyolite and dacite lavas vented low on the flanks of the cluster. Obsidian Cliff rhyolite (37.8+/-1.8 ka) and Lane Plateau dacite (21.4+/-1.9 ka) erupted W of Middle Sister, the Dew Lake dacite (32.3+/-1.8 ka) located near the locus of the INSAR anomaly W of South Sister flowed around a 148+/-4 ka (knob 6482) basalt

  6. Electronic states of BP, BP +, BP -, B 2P 2, B2P2- and B2P2+

    NASA Astrophysics Data System (ADS)

    Linguerri, Roberto; Komiha, Najia; Oswald, Rainer; Mitrushchenkov, Alexander; Rosmus, Pavel

    2008-05-01

    Using augmented sextuple zeta basis sets and internally contracted multireference configuration interaction (MRCI) wavefunctions, potential energy, electric dipole and transition moments have been computed for the X 3Π, a 1Σ +, b 1Π and A 3Σ - states of BP, X 2Σ + and A 2Π states of BP - and X 4Σ - and A 4Π states of BP +. From these data spectroscopic constants, radiative transition probabilities and photoelectron spectra of BP - and BP have been evaluated. The non-vanishing spin-orbit coupling elements between the four low lying triplet and singlet states of the neutral BP have also been calculated from MRCI wavefunctions. The treatment of the corresponding perturbations in the manifold of dense rovibrational states in the three lowest states would require a precise knowledge of the electronic excitation energies. Our best singlet-triplet separations (X-a) are calculated to be 2412 cm -1 (MRCI) and 2482 cm -1 (restricted coupled cluster with perturbative triples (RCCSD(T))) with an estimated error bound of about ±200 cm -1. All three states have long radiative lifetimes with cascading among the rovibrational levels of different states. The ionization energy IE e of BP is calculated to be 9.22 eV (MRCI) and 9.48 eV (RCCSD(T)), the electron affinity EA e 2.51 eV (MRCI) and 2.74 eV (RCCSD(T)). The photoelectron spectra of BP and BP - have been obtained from the Franck-Condon factors of the MRCI potentials. For the UV spectroscopy the dipole allowed radiative transition probabilities are given for A 3Σ - ↔ X 3Π, b 1Π ↔ a 1Σ + of BP, A 2Π ↔ X 2Σ + of BP - and A 4Π ↔ X 4Σ - of BP +. The ionization energy IE e of B 2P 2 of 8.71 eV and the electron affinity EA e of 2.34 eV have been calculated by the RCCSD(T)/aVQZ approach. Also the harmonic vibrational wavenumbers for the electronic ground states of the ions B2P2+ and B2P2- are given.

  7. The Environmental impact of the 8.2 and 9.2 kyr events in the UK.

    NASA Astrophysics Data System (ADS)

    Jones, Richard; Reinhardt, Liam; Halloran, Paul; Hatton, Jackie; Marshall, Jim

    2015-04-01

    The instability of the Early Holocene climate in NW Europe is due in part to the impact of freshwater pulses in the North Atlantic disrupting thermohaline circulation and reducing the northward transport of heat. Two of the most significant climatic episodes are the 8.2 and 9.2 kyr events, characterised by significant oxygen isotopic excursions in NW European lacustrine and speleothem records, the Greenland Ice-core record and changing SSTs in the North Atlantic sector. Assessing the impact of these two events on terrestrial systems is problematic due to the difficulty in identifying their signature in terrestrial archives. A sub-decadal oxygen isotope record from a Holocene micrite core from Hawes Water NW England provides unambiguous evidence for two significant isotopic excursions equivalent to the 9.2 and 8.2 kyr events. Lasting 50 and 150 yr respectively they are characterised by a slight cooling of around 1.6oC in mean July air temperatures (chironomid inferred). The environmental impact of each event was minimal, with no evidence for any significant changes in the range or abundance of plant taxa and no evidence for catchment instability. These results support the idea that the 8.2 and 9.2 kyr events are primarily a reflection of the changing isotopic composition of meteoric precipitation (δ18Op) and in the UK at least were of limited environmental significance. Analysis of subpolar gyre behaviour and atmospheric circulation across preindustrial control simulations from CMIP5, suggest that the negative isotopic excursions recorded at Hawes Water most likely reflect the influx of isotopically lighter moisture from the Arctic. An influx of freshwater down the Hudson River and into the North Atlantic Current could result in the development of low pressure anomalies over Scandinavia, bringing arctic air and moisture to the UK. This could be expected to produce the relatively minor decline in summer temperatures but would result in the significant negative shift

  8. Radiolarians, foraminifers, and biostratigraphy of the Coniacian-Campanian deposits of the Alan-Kyr Section, Crimean Mountains

    NASA Astrophysics Data System (ADS)

    Bragina, L. G.; Beniamovsky, V. N.; Kopaevich, L. F.

    2016-01-01

    Data on the distribution of radiolarians and planktonic and benthic foraminifers are obtained for the first time from the Alan-Kyr Section (Coniacian-Campanian), in the central regions of the Crimean Mountains. Radiolarian biostrata, previously established from Ak-Kaya Mountain (central regions of the Crimean Mountains) were traced: Alievium praegallowayi-Crucella plana (upper Coniacian-lower Santonian), Alievium gallowayi-Crucella espartoensis (upper Santonian without the topmost part), and Dictyocephalus (Dictyocryphalus) (?) legumen-Spongosaturninus parvulus (upper part of the upper Santonian). Radiolarians from the Santonian-Campanian boundary beds of the Crimean Mountains are studied for the first time, and Prunobrachium sp. ex gr. crassum-Diacanthocapsa acanthica Beds (uppermost Santonian-lower Campanian) are recognized. Bolivinoides strigillatus Beds (upper Santonian) and Stensioeina pommerana-Anomalinoides (?) insignis Beds (upper part of the upper Santonian-lower part of the lower Campanian) are recognized. Eouvigerina aspera denticulocarinata Beds (middle and upper parts of the lower Campanian) and Angulogavelinella gracilis Beds (upper part of the upper Campanian are recognized on the basis of benthic foraminifers. These beds correspond to the synchronous biostrata of the East European Platform and Mangyshlak. Marginotruncana coronata- Concavatotruncana concavata Beds (Coniacian-upper Santonian), Globotruncanita elevata Beds (terminal Santonian), and Globotruncana arca Beds (lower Campanian) are recognized on the basis of planktonic foraminifers. Radiolarian and planktonic and benthic foraminiferal data agree with one another. The position of the Santonian-Campanian boundary in the Alan-Kyr Section, which is located stratigraphically above the levels of the latest occurrence of Concavatotruncana concavata and representatives of the genus Marginotruncana, is refined, i.e., at the level of the first appearance of Globotruncana arca. A gap in the Middle

  9. BP: synthesis and properties of boron phosphide

    NASA Astrophysics Data System (ADS)

    Woo, Katherine; Lee, Kathleen; Kovnir, Kirill

    2016-07-01

    Cubic boron phosphide, BP, is notorious for its difficult synthesis, thus preventing it from being a widely used material in spite of having numerous favorable technological properties. In the current work, three different methods of synthesis are developed and compared: from the high temperature reaction of elements, Sn flux assisted synthesis, and a solid state metathesis reaction. Structural and optical properties of the products synthesized from the three methods were thoroughly characterized. Solid state metathesis is shown to be the cleanest and most efficient method in terms of reaction temperature and time. Synthesis by Sn flux resulted in a novel Sn-doped BP compound. Undoped BP samples exhibit an optical bandgap of ∼2.2 eV while Sn-doped BP exhibits a significantly smaller bandgap of 1.74 eV. All synthesized samples show high stability in concentrated hydrochloric acid, saturated sodium hydroxide solutions, and fresh aqua regia.

  10. Stratigraphic Correlation of an Excursion at 22 kyr in the U.S. Great Basin - the Hilina Pali Excursion?

    NASA Astrophysics Data System (ADS)

    Liddicoat, J. C.; Coe, R. S.

    2013-12-01

    An unusually large secular variation of the geomagnetic field recorded in outcrops of pluvial Lake Russell sediment about 22 kyr old in the Mono Basin, CA, can be used for precise correlation to other lacustrine sections in the western U.S., and perhaps beyond. We present new AF and thermal demagnetization results for paired samples at 2-cm intervals between ash layers 7 and 8 of Lajoie (1968) in the bank of Wilson Creek that document an excursion having an inclination as low as 16 degrees and as high as 73 degrees, while the declination swings from 15 degrees west during the low inclination to 30 east when the inclination is high, and back to average northerly declination and expected inclination. The corresponding VGPs form a narrow clockwise-trending loop centered at about 50 N, 30 E. The Mono Lake Excursion (MLE; Liddicoat and Coe, 1979) occurs 1.7 m lower in the same section. The best estimates for the ages of the two excursions are about 22 and 32 kyr, based on 14-C dates (Cassata et al., 2010). About 150 km to the north, sediments of about the same age exposed along the Truckee River that were deposited in pluvial Lake Lahontan record a similar geomagnetic signature. Moreover, both the MLE and this excursion are exhibited at the appropriate levels in a sediment core taken from Pyramid Lake, the remnant of Lake Lahontan (Benson et al., 2008). Thus, this excursion is a valuable marker for high-resolution correlation of Quaternary sediments in the western U.S., especially when paired with the MLE. It is tempting to try to identify this geomagnetic feature with others of about the same age further away. On the island of Hawaii, Coe et al. (1978) discovered a lava flow on the Hilina Pali with a calibrated 14-C age of 21 +/-1 kyr that has an inclination about 30 degrees shallower and a paleointensity 60 percent lower than today. Later Teanby et al. (2002) documented an excursion with inclinations as low as -35 degrees, recorded by around 40 successive flows with

  11. Sea ice and millennial-scale climate variability in the Nordic seas 90 kyr ago to present

    NASA Astrophysics Data System (ADS)

    Hoff, Ulrike; Rasmussen, Tine L.; Stein, Ruediger; Ezat, Mohamed M.; Fahl, Kirsten

    2016-07-01

    In the light of rapidly diminishing sea ice cover in the Arctic during the present atmospheric warming, it is imperative to study the distribution of sea ice in the past in relation to rapid climate change. Here we focus on glacial millennial-scale climatic events (Dansgaard/Oeschger events) using the sea ice proxy IP25 in combination with phytoplankton proxy data and quantification of diatom species in a record from the southeast Norwegian Sea. We demonstrate that expansion and retreat of sea ice varies consistently in pace with the rapid climate changes 90 kyr ago to present. Sea ice retreats abruptly at the start of warm interstadials, but spreads rapidly during cooling phases of the interstadials and becomes near perennial and perennial during cold stadials and Heinrich events, respectively. Low-salinity surface water and the sea ice edge spreads to the Greenland-Scotland Ridge, and during the largest Heinrich events, probably far into the Atlantic Ocean.

  12. Teasing Apart Regional Climate and Meltwater Influences on Florida Straits Sea Surface Temperature and Salinity over the past 40 kyr

    NASA Astrophysics Data System (ADS)

    Schmidt, M. W.; Lynch-Stieglitz, J.

    2008-12-01

    Recent reconstructions of North Atlantic salinity variability over the last glacial cycle show that abrupt climate events are linked to major reorganizations in the low-latitude hydrologic cycle, affecting large-scale changes in evaporation minus precipitation (E-P) patterns. Although there is general agreement that the Intertropical Convergence Zone (ITCZ) migrates southward during cold stadials, it remains unclear how this shift affects the net E-P budget in the North Atlantic. In order to reconstruct a high resolution record of past sea surface temperature (SST) and salinity (SSS) in the Florida Straits across abrupt climate events of the last 40 kyr, we combine Mg/Ca paleothermometry and δ18O measurements in shells from the surface-dwelling foraminifera Globigerinoides ruber in cores KNR166-2-JPC29 (24°17'N, 83°16'W; 648 m depth; 8-20 cm/kyr sed. rate) and JPC26 (24°19.61'N, 83°15.14'W; 546 m depth; 18-240 cm/kyr sed. rate) and calculate δ18OSEAWATER (δ18OSW) variability. Removal of the δ18OSW signal due to continental ice volume variation results in the ice volume-free (IVF) δ18OSW record (a proxy for SSS variability). Although most waters flowing through the Florida Straits today originate in the tropical western Atlantic, major meltwater discharges from the Mississippi River across the last deglacial period also influenced SST and SSS in the Florida Straits. To constrain periods of increased meltwater discharge, we measured Ba/Ca ratios in G. ruber from select intervals. Because riverine waters have a much higher dissolved Ba+2 concentration relative to seawater, foraminifera Ba/Ca ratios can be used as an additional proxy to constrain periods of increase riverine discharge. Initial results suggest the hydrographic history of the Florida Straits is influenced by both meltwater discharge and regional climate variability linked to the high-latitude North Atlantic. Both the IVF- δ18OSW and Ba/Ca records reveal a prolonged period from 16.0-13.0 kyr

  13. Changes in dominant moisture sources and the consequences for hydroclimate on the northeastern Tibetan Plateau during the past 32 kyr

    NASA Astrophysics Data System (ADS)

    Thomas, Elizabeth K.; Huang, Yongsong; Clemens, Steven C.; Colman, Steven M.; Morrill, Carrie; Wegener, Pamela; Zhao, Jiangtao

    2016-01-01

    Lake Qinghai, located on the northeastern Tibetan Plateau north of the modern maximum summer monsoon extent, is well situated to record northward advances of the summer monsoon. Existing paleoclimate records contain conflicting evidence for the timing of summer monsoon advance into this region: an early arrival pre-Younger Dryas or a late arrival at the beginning of the Holocene. A 30-kyr-long leaf wax hydrogen isotope (n-alkanoic acid, δ2Hwax) record from Lake Qinghai helps to address this discrepancy by elucidating changes in the three main moisture sources in this region: southerly (summer monsoon), northwesterly, and local precipitation. Lake Qinghai δ2Hwax indicates that the arid glacial period was dominated by northwesterly moisture. Extremely arid conditions prevailed from 15 to 14 ka, likely because westerly winds were weakening and the summer monsoon had not yet reached this region. This arid period ended by 13.6 ka when small amounts of summer monsoon precipitation reached Lake Qinghai. Summer monsoon moisture subsequently retreated off of the northeastern Tibetan Plateau during the Younger Dryas and re-advanced in the early Holocene. Summer monsoon precipitation decreased progressively throughout the Holocene in response to decreasing summer insolation, and the modern northwesterly- and local-dominated moisture regime was attained ca. 2.6 ka. Lake Qinghai δ2Hwax demonstrates that the summer monsoon extent was dynamic during the past 30 kyr, responding dramatically to insolation and North Atlantic circulation changes. Moreover, Lake Qinghai δ2Hwax demonstrates that local and northwesterly air masses are important moisture sources to the northeastern Tibetan Plateau, and should be considered when reconstructing past hydroclimate in this region.

  14. Variations in flow and transport in thick desert vadose zones in response to paleoclimatic forcing (0-90 kyr): Field measurements, modeling, and uncertainties

    USGS Publications Warehouse

    Scanlon, B.R.; Keese, K.; Reedy, R.C.; Simunek, J.; Andraski, B.J.

    2003-01-01

    An understanding of unsaturated flow and potential recharge in interdrainage semiarid and arid regions is critical for quantification of water resources and contaminant transport. We evaluated system response to paleoclimatic forcing using water potential and Cl profiles and modeling of nonisothermal liquid and vapor flow and Cl transport at semiarid (High Plains, Texas) and arid (Chihuahuan Desert, Texas; Amargosa Desert, Nevada) sites. Infiltration in response to current climatic forcing is restricted to the shallow (???0.3-3 m) subsurface. Subsurface Cl accumulations correspond to time periods of 9-90 kyr. Bulge-shaped Cl profiles generally represent accumulation during the Holocene (9-16 kyr). Lower Cl concentrations at depth reflect higher water fluxes (0.04-8.4 mm/yr) during the Pleistocene and earlier times. Low water potentials and upward gradients indicate current drying conditions. Nonisothermal liquid and vapor flow simulations indicate that upward flow for at least 1-2 kyr in the High Plains and for 1.2-16 kyr at the Chihuahuan and Amargosa desert sites is required to reproduce measured upward water potential gradients and that recharge is negligible (<0.1 mm/yr) in these interdrainage areas.

  15. Catastrophic flank collapses and slumping in Pico Island during the last 130 kyr (Pico-Faial ridge, Azores Triple Junction)

    NASA Astrophysics Data System (ADS)

    Costa, A. C. G.; Hildenbrand, A.; Marques, F. O.; Sibrant, A. L. R.; Santos de Campos, A.

    2015-09-01

    The Pico Island constitutes the easternmost sub-aerial domain of a steep WNW-ESE volcanic ridge, which has developed within the Nubia-Eurasia diffuse plate boundary (Azores Triple Junction). The island comprises three volcanic systems, from older to younger: the Topo Volcano, the Fissural System, and the Pico Stratovolcano. From a high-resolution Digital Elevation Model (10 m), and new bathymetric, stratigraphic, structural, and high-precision K-Ar data, we reconstruct the main successive stages of growth and partial destruction of the island over the last 200 kyr. We especially concentrate on the central sector of the island, which has recorded gradual movements through slumping and catastrophic flank collapses since ca. 130 kyr. The remmants of the Topo Volcano are partly exposed on Pico's SE flank, and are here dated between 186 ± 5 and 115 ± 4 ka. Topo was significantly destroyed by N- and S-directed large-scale flank collapses between ca. 125 and 70 ka. On Pico's N flank, collapse seems to have removed all the unstable material, but in the S the collapse structure is composite, including a major flank collapse and a remnant slump complex that is still active. A first episode of deformation occurred between ca. 125 and 115 ka along the master fault of the slump. Between ca. 115 and 69 ka, most of the unstable material was removed by a major flank collapse, leaving behind a still considerable volume of unstable material that comprises the active slump. This first collapse was catastrophic and generated a large debris deposit recognized on the high-resolution bathymetry, with a minimum run-out of ca. 17 km. The scar was partially filled by volcanic products erupted from volcanic cones developed within the slump depression, and possibly also from the early WNW-ESE Fissural System. Subsequent deformation in the slump area affected in part the filling units, leading to the individualization of secondary curved faults. Younger volcanic products have gradually

  16. Benthic foraminiferal δ18O-Mg/Ca from the SE Nordic seas during the last 65 kyr

    NASA Astrophysics Data System (ADS)

    Ezat, M.; Rasmussen, T. L.; Groeneveld, J.

    2013-12-01

    Benthic foraminiferal δ18O-Mg/Ca from the SE Nordic seas during the last 65 kyr Mohamed M. Ezat1,2*, Tine L. Rasmussen1, Jeroen Groeneveld3 1 CAGE - Centre for Arctic Gas Hydrate, Environment and Climate, and Department of Geology, University of Tromsø, NO-9037 Tromsø, Norway. 2 Department of Geology, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt. 3 Department of Geosciences, University of Bremen, Klagenfurter Strasse, 28359, Bremen, Germany. * e-mail: mohamed.ezat@uit.no The climate during the last glacial period underwent rapid millennial-scale variability known as Dansgaard-Oeschger (DO) events of warm interstadials and cold stadials. DO events are manifested in marine and continental records in the circum-North Atlantic region and throughout the globe. Several studies suggest a crucial role of the Nordic seas in regulating the climate during the last glacial period. Previous studies from the Nordic seas revealed low benthic δ18O values during stadials and high values during interstadials. The causes of the depletions in benthic 18O during stadials are highly debated. Sinking of isotope depleted-brines formed due to sea ice production has previously been proposed. Another explanation has indicated warming of the intermediate water in the Nordic seas based on the finding of warm water benthic foraminiferal species during stadials. Here we present the first benthic foraminiferal Mg/Ca-based bottom water temperature (BWT) record from the Nordic seas that, along with other proxies, aims to resolve the hydrographic changes at intermediate water depth on DO timescale during the last 65 kyr. The results show pronounced and gradual BWT increases during all cold stadials followed by an abrupt drop to modern-like BWT at interstadials onsets. The increase in BWT, caused by the subsurface inflow of warm Atlantic intermediate water, substantially contributed to the halocline collapse and onset of interstadial conditions throughout complex ocean-sea ice

  17. The 8.2 kyr event recorded at high resolution by a speleothem from the Northern French Alps

    NASA Astrophysics Data System (ADS)

    Couchoud, Isabelle; Drysdale, Russell; Hellstrom, John; Perrette, Yves

    2016-04-01

    Continental records of Holocene climate variability in the Alps are scarce and they rarely document the "8.2 kyr event". Several reasons have been proposed: records do not have sufficient resolution, are not precisely dated or the proxies are not sufficiently sensitive to climate variations associated with this event. The European records of adequate resolution generally allow the identification of an anomaly but its characterisation is unclear: it seems that the event has triggered significant impacts only for a few decades and mainly expressed in winter (whereas most archives are more sensitive to summer conditions). Thus, the detailed characterisation of the impacts of this event requires records with sub-annual resolution and preferably sensitive to winter conditions. Here we present a multi-proxy, high-resolution analysis of this event, as recorded by a stalagmite of the Bauges massif (Northern French Alps), at ~1400 m altitude. Comparison of these results with other regional and distant data allows for a discussion about climatic impacts and teleconnections at this time.

  18. Sea ice and millennial-scale climate variability in the Nordic seas 90 kyr ago to present

    PubMed Central

    Hoff, Ulrike; Rasmussen, Tine L.; Stein, Ruediger; Ezat, Mohamed M.; Fahl, Kirsten

    2016-01-01

    In the light of rapidly diminishing sea ice cover in the Arctic during the present atmospheric warming, it is imperative to study the distribution of sea ice in the past in relation to rapid climate change. Here we focus on glacial millennial-scale climatic events (Dansgaard/Oeschger events) using the sea ice proxy IP25 in combination with phytoplankton proxy data and quantification of diatom species in a record from the southeast Norwegian Sea. We demonstrate that expansion and retreat of sea ice varies consistently in pace with the rapid climate changes 90 kyr ago to present. Sea ice retreats abruptly at the start of warm interstadials, but spreads rapidly during cooling phases of the interstadials and becomes near perennial and perennial during cold stadials and Heinrich events, respectively. Low-salinity surface water and the sea ice edge spreads to the Greenland–Scotland Ridge, and during the largest Heinrich events, probably far into the Atlantic Ocean. PMID:27456826

  19. Sea ice and millennial-scale climate variability in the Nordic seas 90 kyr ago to present.

    PubMed

    Hoff, Ulrike; Rasmussen, Tine L; Stein, Ruediger; Ezat, Mohamed M; Fahl, Kirsten

    2016-01-01

    In the light of rapidly diminishing sea ice cover in the Arctic during the present atmospheric warming, it is imperative to study the distribution of sea ice in the past in relation to rapid climate change. Here we focus on glacial millennial-scale climatic events (Dansgaard/Oeschger events) using the sea ice proxy IP25 in combination with phytoplankton proxy data and quantification of diatom species in a record from the southeast Norwegian Sea. We demonstrate that expansion and retreat of sea ice varies consistently in pace with the rapid climate changes 90 kyr ago to present. Sea ice retreats abruptly at the start of warm interstadials, but spreads rapidly during cooling phases of the interstadials and becomes near perennial and perennial during cold stadials and Heinrich events, respectively. Low-salinity surface water and the sea ice edge spreads to the Greenland-Scotland Ridge, and during the largest Heinrich events, probably far into the Atlantic Ocean. PMID:27456826

  20. Thermal isolation of Campbell Plateau, New Zealand, by the Antarctic Circumpolar Current over the past 130 kyr

    NASA Astrophysics Data System (ADS)

    Neil, Helen L.; Carter, Lionel; Morris, Michele Y.

    2004-12-01

    Campbell Plateau occupies a key position in the southwest Pacific sector of the Southern Ocean. The plateau confines and steers the Antarctic Circumpolar Current (ACC) along its flanks, isolating the Subantarctic plateau from cold polar waters. Oxygen and carbon isotope records from Campbell Plateau cores provide new records of water mass stratification for the past 130 kyr. During glacial climes, strengthening of the Subantarctic Front (SAF) caused waters over the plateau flanks to be deeply mixed and ˜3°C cooler. Waters of the plateau interior remained stratified and isolated from the cold southern waters. In the west, waters cooled markedly (˜4°C) owing to reduced entrainment of Tasman Sea water. Marked cooling also occurred north of Campbell Plateau under increased entrainment of polar water by a branch of the SAF. The ACC remained along the flanks of Campbell Plateau during the last interglacial, when interior waters were stratified and warmer by ˜1°C than now.

  1. Variability of Indian summer monsoon over the past 252 kyr revealed by stalagmite record in Southwest China

    NASA Astrophysics Data System (ADS)

    Cai, Y.; Fung, I. Y.; Edwards, R.; An, Z.; Cheng, H.; Lee, J.

    2013-12-01

    Multiple proxies obtained from Arabian Sea sediments have revealed the variability of Indian summer Monsoon (ISM) on time scale of 100-105 years. These proxies mainly capture summertime winds over the Arabian Sea and our understanding of Indian summer monsoon precipitation variability; and the relationship between paleo-ISM and paleo East Asia summer monsoon (EASM) lacks precise articulation, however, due to the scarcity of high-resolution precipitation records spanning a glacial-interglacial cycle. Here, we present an absolutely-dated oxygen isotope record from stalagmites in Xiaobailong (XBL) cave, southwestern China, that documents the variability in local precipitation and the ISM for the past 252,000 years. This record is dominated by 23-kyr precessional cycles punctuated by prominent millennial-scale oscillations that are synchronous with Heinrich events in the North Atlantic. It also shows clear glacial-interglacial variations that are consistent with marine and other terrestrial proxies. The distinct glacial-interglacial range in XBL δ18O is larger than that of speleothem records from eastern China. Corroborated with results from an isotope-enabled global climate model, we hypothesize that these dissimilarities may reflect the different responses of ISM and EASM to changes in global circulation and moisture source, in particular those caused by glacial-interglacial sea-land configuration changes as manifested by notable coastline shifts in the Western Pacific and Maritime Continent.

  2. Palaeomagnetic intensities from 14C-dated lava flows on the Big Island, Hawaii: 0-21 kyr

    USGS Publications Warehouse

    Pressling, Nicola; Laj, Carlo; Kissel, Catherie; Champion, Duane E.; Gubbins, David

    2006-01-01

    Thellier–Thellier experiments were carried out on 216 lava samples collected by the USGS on the Big Island. 35 individual flows from the Kilauea, Mauna Loa and Hualalai volcanoes are represented and independent radiocarbon dating of the flows yields absolute ages ranging from 290 to 20,240 yrs old. The palaeomagnetic analysis was carried out at the Laboratoire des Sciences du Climat et de l'Environnement in Gif-sur-Yvette, France, in two custom built, large capacity furnaces that have been specifically designed to minimise oxidation. The temperature steps were adapted to accommodate the characteristic loss of magnetisation at low temperatures seen in the Curie balance results and the use of half-size samples allowed secondary experiments to be carried out where necessary. The strict PICRIT-03 selection criteria were rigorously applied to the data and a high success rate of 53% has been achieved on a sample level. The flow averaged results almost double the existing 14C-dated palaeointensity dataset for this time window and confirm a period of high intensity over the past 4 kyr preceded by a period in which the dipole moment was weaker. However, the values attained in this study are on average higher than previously published data; reliability of these values is discussed.

  3. Export production in the subarctic North Pacific over the last 800 kyrs: No evidence for iron fertilization?

    USGS Publications Warehouse

    Kienast, S.S.; Hendy, I.L.; Crusius, J.; Pedersen, Thomas F.; Calvert, S.E.

    2004-01-01

    The subarctic North Pacific is a high nitrate-low chlorophyll (HNLC) region, where phytoplankton growth rates, especially those of diatoms, are enhanced when micro-nutrient Fe is added. Accordingly, it has been suggested that glacial Fe-laden dust might have increased primary production in this region. This paper reviews published palaeoceanographic records of export production over the last 800 kyrs from the open North Pacific (north of ???35??N). We find different patterns of export production change over time in the various domains of the North Pacific (NW and NE subarctic gyres, the marginal seas and the transition zone). However, there is no compelling evidence for an overall increase in productivity during glacials in the subarctic region, challenging the paradigm that dust-born Fe fertilization of this region has contributed to the glacial draw down of atmospheric CO2. Potential reasons for the lack of increased glacial export production include the possibility that Fe-fertilization rapidly drives the ecosystem towards limitation by another nutrient. This effect would have been exacerbated by an even more stable mixed layer compared to today. ?? The Oceanographic Society of Japan.

  4. A paleomagnetic and relative paleointensity record from the Argentine Basin (western South Atlantic Ocean) for the last ~125 kyrs

    NASA Astrophysics Data System (ADS)

    Heil, C. W., Jr.; Stoner, J. S.; St-Onge, G.; King, J. W.

    2015-12-01

    The paucity of paleomagnetic records from the western South Atlantic Ocean presents a significant gap in our understanding of the spatial variations in geomagnetic field dynamics as they relate to the occurrence of geomagnetic excursions and changes in field strength. As such, high quality records from this region can help build upon Holocene observations and extend the geographic and temporal data coverage for spherical harmonic models. To that end, we present paleomagnetic directional (inclination) and strength (relative paleointensity) records from two cores from the Argentine Basin (RC11-49 and RC16-88). Although the cores were collected more than 40 years ago, the sediments appear to hold a stable remanence and reliable magnetic directions, as evidenced by their reproducibility between the two cores that are separated by ~25 km. The records show evidence of 4 excursional features in the uppermost 16-m of the sediments from the basin. A comparison of the relative paleointensity records from these cores to the South Atlantic Paleointensity Stack (SAPIS) (Stoner et al., 2002) and the relative paleointensity record from ODP Site 1089 (Stoner et al., 2003) indicate that the sediments reliably record relative changes in geomagnetic field intensity and suggests that the longest record (RC11-49) spans the last ~125 kyrs. Our results indicate that the sediments of the Argentine Basin are an important sedimentary archive of geomagnetic field behavior and strength at least through the Holocene and Late Pleistocene and highlight the need for further studies of cores within the basin.

  5. A pervasive link between Antarctic ice core and subarctic Pacific sediment records over the past 800 kyrs

    NASA Astrophysics Data System (ADS)

    Jaccard, S. L.; Galbraith, E. D.; Sigman, D. M.; Haug, G. H.

    2010-01-01

    Recently developed XRF core-scanning methods permit paleoceanographic reconstructions on timescales similar to those of ice-core records. We have investigated the distribution of biogenic barium (Ba/Al), opal and carbonate (Ca/Al) in a sediment core retrieved from the abyssal subarctic Pacific (ODP 882, 50°N, 167°E, 3244 m) over an interval that spans the full length of the EPICA Dome C (EDC) ice-core record. Ba/Al and biogenic opal show a strong resemblance to the EDC δD and CO 2, with generally high concentrations during interglacials and lower values during ice ages of the past 800 kyrs. The sedimentary Ba/Al and biogenic opal are most easily interpreted as indicating a reduced sinking flux of organic matter from the surface ocean during cold periods. The Ba/Al maxima during peak interglacials are accompanied by transient Ca/Al peaks in these otherwise carbonate-devoid sediments, which are best explained by a deepening of the calcite lysocline, presumably due to reduced storage of respired CO 2 in the deep North Pacific. For most of the "luke-warm" interglacials noted between 420 and 750 ka in EDC, the Ba/Al peaks in ODP 882 are also lower, further strengthening the evidence for a simple physical link between global climate and the biogeochemistry of the subarctic Pacific.

  6. Sediment Cd and Mo accumulation in the oxygen-minimum zone off western Baja California linked to global climate over the past 52 kyr

    USGS Publications Warehouse

    Dean, W.E.; Zheng, Yen; Ortiz, J.D.; VanGeen, A.

    2006-01-01

    Concentrations of organic carbon (orgC), cadmium (Cd), and molybdenum (Mo) were measured in two sediment cores raised from depths of 430 and 700 m within the oxygen-minimum zone (OMZ) off southern Baja California at a temporal resolution of e10.5 kyr over the past 52 kyr. These records are supplemented with diffuse spectral reflectance (DSR) measurements obtained on board ship soon after collection at a resolution of e10.05 kyr. In the core from 700 m depth, a component extracted from the DSR data and the three geochemical proxies generally vary in concert with each other and over a wide range (4-22% orgC; 1-40 mg/kg Cd; 5-120 mg/kg Mo). Intervals of increased orgC, Cd, and Mo accumulation generally correspond to warm periods recorded in the oxygen-isotopic composition of Greenland ice, with the exception of the Bolling/Allerod which is only weakly expressed off Baja California. Concentrations of the biogenic proxies are higher in the core from 430 m depth, but erratic sediment accumulation before 15 ka precludes dating of the older intervals that are laminated and contain elevated orgC, Cd, and Mo concentrations. The new data provide further evidence of an intimate teleconnection between global climate and the intensity of the OMZ and/or productivity along the western margin of North America. On the basis of a comparison with Cd and Mo records collected elsewhere in the region, we conclude that productivity may actually have varied off southern Baja California by no more than a factor of 2 over the past 52 kyr. Copyright 2006 by the American Geophysical Union.

  7. Age-depth model of the past 630 kyr for Lake Ohrid (FYROM/Albania) based on cyclostratigraphic analysis of downhole gamma ray data

    NASA Astrophysics Data System (ADS)

    Baumgarten, H.; Wonik, T.; Tanner, D. C.; Francke, A.; Wagner, B.; Zanchetta, G.; Sulpizio, R.; Giaccio, B.; Nomade, S.

    2015-12-01

    Gamma ray (GR) fluctuations and potassium (K) values from downhole logging data obtained in the sediments of Lake Ohrid from 0 to 240 m below lake floor (b.l.f). correlate with fluctuations in δ18O values from the global benthic isotope stack LR04 (Lisiecki and Raymo, 2005). GR and K values are considered a reliable proxy to depict glacial-interglacial cycles, with high clastic input during cold and/or drier periods and high carbonate precipitation during warm and/or humid periods at Lake Ohrid. Spectral analysis was applied to investigate the climate signal and evolution over the length of the borehole. Linking downhole logging data with orbital cycles was used to estimate sedimentation rates and the effect of compaction was compensated for. Sedimentation rates increase on average by 14 % after decompaction of the sediment layers and the mean sedimentation rates shift from 45 cm kyr-1 between 0 and 110 m to 30 cm kyr-1 from 110 to 240 m b.l.f. Tuning of minima and maxima of gamma ray and potassium values versus LR04 extrema, in combination with eight independent tephrostratigraphical tie points, allows establishing of a robust age model for the downhole logging data over the past 630 kyr.

  8. The 15q11.2 BP1–BP2 Microdeletion Syndrome: A Review

    PubMed Central

    Cox, Devin M.; Butler, Merlin G.

    2015-01-01

    Patients with the 15q11.2 BP1–BP2 microdeletion can present with developmental and language delay, neurobehavioral disturbances and psychiatric problems. Autism, seizures, schizophrenia and mild dysmorphic features are less commonly seen. The 15q11.2 BP1–BP2 microdeletion involving four genes (i.e., TUBGCP5, CYFIP1, NIPA1, NIPA2) is emerging as a recognized syndrome with a prevalence ranging from 0.57%–1.27% of patients presenting for microarray analysis which is a two to four fold increase compared with controls. Review of clinical features from about 200 individuals were grouped into five categories and included developmental (73%) and speech (67%) delays; dysmorphic ears (46%) and palatal anomalies (46%); writing (60%) and reading (57%) difficulties, memory problems (60%) and verbal IQ scores ≤75 (50%); general behavioral problems, unspecified (55%) and abnormal brain imaging (43%). Other clinical features noted but not considered as common were seizures/epilepsy (26%), autism spectrum disorder (27%), attention deficit disorder (ADD)/attention deficit hyperactivity disorder (ADHD) (35%), schizophrenia/paranoid psychosis (20%) and motor delay (42%). Not all individuals with the deletion are clinically affected, yet the collection of findings appear to share biological pathways and presumed genetic mechanisms. Neuropsychiatric and behavior disturbances and mild dysmorphic features are associated with genomic imbalances of the 15q11.2 BP1–BP2 region, including microdeletions, but with an apparent incomplete penetrance and variable expressivity. PMID:25689425

  9. Asiago spectroscopic classification of ASASSN-16bp

    NASA Astrophysics Data System (ADS)

    Tomasella, L.; Pastorello, A.; Benetti, S.; Cappellaro, E.; Elias-Rosa, N.; Ochner, P.; Tartaglia, L.; Terreran, G.; Turatto, M.

    2016-02-01

    The Asiago Transient Classification Program (Tomasella et al. 2014, AN, 335, 841) reports the spectroscopic classification of ASASSN-16bp ( = AT 2016adq), discovered by All Sky Automated Survey for SuperNovae ASAS-SN (see Shappee et al. 2014, ApJ, 788, 48 and http://www.astronomy.ohio-state.edu/~assassin/index.shtml ), in CGCG 336-041 (Atel #8666) The observation was performed with the Asiago 1.82 m Copernico Telescope (+AFOSC; range 340-820 nm; resolution 1.4 nm). Name | Discovery UT | Obs. Date UT |z | Type | Phase |Notes ASASSN-16bp | 20160209.61 | 20160211.11 |0.034194 | Ia | ~10d | (1) (1) Also known as SN2016adq in CGCG 336-041 (z=0.034194, d=145 Mpc, via NED).

  10. Precessional changes in the western equatorial Pacific Hydroclimate: A 240 kyr marine record from the Halmahera Sea, East Indonesia

    NASA Astrophysics Data System (ADS)

    Dang, Haowen; Jian, Zhimin; Kissel, Catherine; Bassinot, Franck

    2015-01-01

    the precession band, an interhemispheric antiphase pattern in the tropical hydroclimate is supported by many paleorecords, and optimally explained by the forcing of precessional insolation change. However, scenarios within the western equatorial Pacific (WEP), which plays the role of the ascending center of atmospheric convection, remain poorly determined. In this study, a marine sediment core from the Halmahera Sea, East Indonesia, was analyzed with high-resolution XRF scanning, quantitative discrete XRF, and ICP-AES/MS measurements. The terrigenous fractions in this core are constrained by their trace elemental characteristics to be locally sourced from Halmahera Island, and hence reflect variations in the local riverine runoff and precipitation. On this basis, a continuous record of precipitation changes of the western equatorial Pacific was reconstructed with multidecadal resolution over the last ˜240 ka, using an age model established by the correlation between an adjusted ice volume model and benthic δ18O constrained by 14C dating. The records of terrigenous input show a dominant ˜23 kyr periodicity with a 90°˜100° phase lag to the boreal summer (i.e., in-phase with the boreal autumn) insolation change. This pattern can be explained by the variability in the convective activity over the WEP, which might be primarily controlled by precessional changes in the El Niño and Southern Oscillation (ENSO) system. A dynamic linkage is implied between the precessional variations in the convective activity in the WEP and the East Asian and Australia-Indonesian summer monsoons (EASM and AISM), in the sense of their distinct stable phase relationship to precession.

  11. Links between carbonate productivity and ENSO variability in the southern California Current System for the past 2 Kyrs

    NASA Astrophysics Data System (ADS)

    Abella-Gutiérrez, J. L.; Herguera, J. C.

    2014-12-01

    San Lázaro Basin (SLB) is a suboxic basin characteristic for its very high sedimentation rates (1mm/yr) and is located in the dynamic southern boundary of the California Current System (CCS). This southern boundary of the CCS generally extends further south during spring into early summer and retracts towards the north during fall and winter, and this pattern is further amplified or reduced on different time scales, (e.i. interannual timescales by El Niño and La Niña events, or multidecadal ones by the Pacific Decadal Oscillation (PDO)). These oceanographic conditions are related with important differences in the base of the food chain; when the boundary migrates to northern latitudes, the presence of relatively warmer tropical and subtropical waters further stratify the water column, a period when coccolithophorids dominate the microplankton web structure. On the other side, diatoms flourish when the wind-driven circulation expand the subarctic water masses of the CCS to the south and upwelling cells are generated. We find in our cores XRF Ca counts (1 mm resolution) highly correlate with CaCO3 measurements (R=0.56), this last one showing a general decreasing trend over the past 2 Kyrs. The Ca spectrum analysis shows significant peaks for periods centered at 28, 40, 60, 120 yr. The centennial mode of variability of the Ca record shows correlations with Drought area Index from North America. When the variance of this mode is considered, similarities arises with intensity and number of ENSO events from Equatorial archives. Decadal variations of the record are highly correlated (R>0.8) with instrumental measurements of Kaplan sea surface temperature, and the PDO. We will discuss the implications of these periods in the carbonate record and the links between them and other paleoceanographic records in the Pacific.

  12. Heavy mineral variation in the deep sea sediment of southeastern Arabian Sea during the past 32 kyr

    NASA Astrophysics Data System (ADS)

    Akaram, Vaseem; Das, S. S.; Rai, A. K.; Mishra, Gaurav

    2015-03-01

    The present study is based on heavy mineral assemblages (HM) of top 104-cm thick section of gravity core SK 221 (Lat. 8∘7.12'N; Long. 73∘16.38'E and water depth - 2188 m) located near the Chagos-Laccadive Ridge in the southeastern Arabian Sea to evaluate the provenance and paleoenvironmental changes during the last 32 kyr. The biogenic carbonate, acid insoluble residue, magnetic susceptibility, total organic carbon (TOC) and clay based humidity index, i.e., kaolinite/illite ratio are also utilized to correlate with the above paleoenvironmental changes. Ilmenite, garnet, staurolite, pyroxenes, andalusite and zircon are the dominant HM with moderate to low ZTR (zircon-tourmaline-rutile) index indicating instability of the sediments and rapid erosion in the source region. The characteristic HM suggest their mixed sources from the basic igneous, gneisses/granites, high grade metamorphic rocks and sandstones occurring mainly in the western and southwestern India. The temporal variations of HM, AIR (acid insoluble residue), MS (magnetic susceptibility), biogenic carbonate and Corg (TOC) during preglacial and early Holocene suggest intensive weathering, erosion, and transportation of terrigenous detritus from continental region by fluvial processes and summer monsoon led high biogenic productivity, respectively. The convective mixing of waters due to intense winter monsoon resulted in very high biogenic carbonate content during the early stages of glacial period. The HM and associated proxies indicated that the winter monsoons of Heinrich (H3, H2, and H1) and Younger Dryas (YD) events and summer monsoons of Bølling/Allerød (BA) event were not strong enough to bring drastic changes in the above parameters.

  13. Hypoxia-driven variations in iron and manganese shuttling in the Baltic Sea over the past 8 kyr

    NASA Astrophysics Data System (ADS)

    Lenz, Conny; Jilbert, Tom; Conley, Daniel J.; Slomp, Caroline P.

    2015-10-01

    The Baltic Sea has experienced three major intervals of bottom water hypoxia following the intrusion of seawater circa 8 kyr ago. These intervals occurred during the Holocene Thermal Maximum (HTM), Medieval Climate Anomaly (MCA), and during recent decades. Here we show that sequestration of both Fe and Mn in Baltic Sea sediments generally increases with water depth, and we attribute this to shelf-to-basin transfer ("shuttling") of Fe and Mn. Burial of Mn in slope and basin sediments was enhanced following the lake-brackish/marine transition at the beginning of the hypoxic interval during the HTM. During hypoxic intervals, shelf-to-basin transfer of Fe was generally enhanced but that of Mn was reduced. However, intensification of hypoxia within hypoxic intervals led to decreased burial of both Mn and Fe in deep basin sediments. This implies a nonlinearity in shelf Fe release upon expanding hypoxia with initial enhanced Fe release relative to oxic conditions followed by increased retention in shelf sediments, likely in the form of iron sulfide minerals. For Mn, extended hypoxia leads to more limited sequestration as Mn carbonate in deep basin sediments, presumably because of more rapid reduction of Mn oxides formed after inflows and subsequent escape of dissolved Mn to the overlying water. Our Fe records suggest that modern Baltic Sea hypoxia is more widespread than in the past. Furthermore, hypoxia-driven variations in shelf-to-basin transfer of Fe may have impacted the dynamics of P and sulfide in the Baltic Sea thus providing potential feedbacks on the further development of hypoxia.

  14. Mindanao Dome variability over the last 160 kyr: Episodic glacial cooling of the West Pacific Warm Pool

    NASA Astrophysics Data System (ADS)

    Bolliet, Timothé; Holbourn, Ann; Kuhnt, Wolfgang; Laj, Carlo; Kissel, Catherine; Beaufort, Luc; Kienast, Markus; Andersen, Nils; Garbe-Schönberg, Dieter

    2011-02-01

    We present sea surface, upper thermocline, and benthic δ18O data, as well as temperature and paleoproductivity proxy data, from the International Marine Global Change Study Program (IMAGES) Core MD06-3067 (6°31‧N, 126°30‧E, 1575 m water depth), located in the western equatorial Pacific Ocean within the flow path of the Mindanao Current. Our records reveal considerable glacial-interglacial and suborbital variability in the Mindanao Dome upwelling over the last 160 kyr. Dome activity generally intensified during glacial intervals resulting in cooler thermocline waters, whereas it substantially declined during interglacials, in particular in the early Holocene and early marine oxygen isotope stage (MIS) 5e, when upwelling waters did not reach the thermocline. During MIS 3 and MIS 2, enhanced surface productivity together with remarkably low SST and low upper ocean thermal contrast provide evidence for episodic glacial upwelling to the surface, whereas transient surface warming marks periodic collapses of the Mindanao Dome upwelling during Heinrich events. We attribute the high variability during MIS 3 and MIS 2 to changes in the El Niño Southern Oscillation state that affected boreal winter monsoonal winds and upper ocean circulation. Glacial upwelling intensified when a strong cyclonic gyre became established, whereas El Niño-like conditions during Heinrich events tended to suppress the cyclonic circulation, reducing Ekman transport. Thus, our findings demonstrate that variations in the Mindanao Dome upwelling are closely linked to the position and intensity of the tropical convection and also reflect far-field influences from the high latitudes.

  15. High-latitude forcing of diatom productivity in the southern Agulhas Plateau during the past 350 kyr

    NASA Astrophysics Data System (ADS)

    Romero, O. E.; Kim, J.-H.; Bárcena, M. A.; Hall, I. R.; Zahn, R.; Schneider, R.

    2015-02-01

    The hydrography of the Indian-Atlantic Ocean gateway has been connected to high-latitude climate dynamics by oceanic and atmospheric teleconnections on orbital and suborbital timescales. A wealth of sedimentary records aiming at reconstructing the late Pleistocene paleoceanography around the southern African continent has been devoted to understanding these linkages. Most of the records are, however, clustered close to the southern South African tip, with comparatively less attention devoted to areas under the direct influence of frontal zones of the Southern Ocean/South Atlantic. Here we present data of the composition and concentration of the diatom assemblage together with bulk biogenic content and the alkenone-based sea surface temperature (SST) variations for the past 350 kyr in the marine sediment core MD02-2588 (approximately 41°S, 26°E) recovered from the southern Agulhas Plateau. Variations in biosiliceous productivity show a varying degree of coupling with Southern Hemisphere paleoclimate records following a glacial-interglacial cyclicity. Ecologically well-constrained groups of diatoms record the glacial-interglacial changes in water masses dynamics, nutrient availability, and stratification of the upper ocean. The good match between the glacial maxima of total diatoms concentration, Chaetoceros spores abundance, and opal content with the maximum seasonal cover of Antarctic ice and the atmospheric dust records points to a dominant Southern Hemisphere forcing of diatom production. Suborbital variability of SST suggests rapid latitudinal migrations of the Subtropical Front and associated water masses over the southern Agulhas Plateau, following millennial contractions and expansions of the subtropical gyres. Warmings of the upper ocean over site MD02-2588 during terminations IV to I occurred earlier than that in the Antarctic Vostok, which is indicative of a Northern Hemisphere lead. Our multiparameter reconstruction highlights how high

  16. Temperature variations in Greenland from 10 to 110 kyr b2k derived from the NGRIP ice core

    NASA Astrophysics Data System (ADS)

    Kindler, Philippe; Leuenberger, Markus; Landais, Amaelle; Guillevic, Myriam

    2013-04-01

    During the last ice age dramatic temperature variations of up to 16 °C took place in Greenland which are now known as Dansgaard-Oeschger-events (DO-events). They most probably originate from the North Atlantic oceanic and atmospheric circulation system and are characterised by an abrupt warming within decades followed by a gradual cooling over hundreds to thousands of years. We have determined local temperature variations for DO-event 1 to 25 in Greenland based on δ15N measurements from the NorthGRIP ice core, corresponding to the period from 10 to 110 kyr b2k. The record is a composite of measurements from two laboratories, Laboratoire des Sciences du Climat et de l'Environnement, Paris (DO 18 to 25) and the Climate and Environmental Physics Division of the Physics Institute of the University of Bern (DO 1 to 17) with new measurements from the beginning of the Holocene to DO 8. Temperature variations were reconstructed by reproducing the measured 15N/14N ratio of air enclosed in ice bubbles by the firn densification and heat diffusion model from Schwander. The reconstruction show temperature amplitudes for the DO-events ranging from 5 to 16 °C, thereby the corresponding rates of change can exceed 0.5 °C/decade. In order get an agreement between measured δ15N, Δdepth and Δage values with their modelled analogues, a lower accumulation rate than the one associated with the used ss09sea06bm1 time scale had to be assumed. We had to reduce the accumulation rate time dependently by 0 to nearly 40% with a mean reduction over the whole time period of 16%. With these adjustments both the Δdepth and the Δage values agree between model and measurements.

  17. Nephrotoxicity of selectively deuterated and methylated analogues of Tris-BP and Bis-BP in the rat.

    PubMed

    Søderlund, E J; Omichinski, J G; Dahl, J E; Nelson, S D; Dybing, E

    1988-03-01

    Selectively deuterated and methylated analogues of the flame retardant tris(2,3-dibromopropyl)phosphate (Tris-BP) and its nephrotoxic metabolite bis(2,3-dibromopropyl)phosphate (Bis-BP) were compared to Tris-BP and Bis-BP in inducing acute renal damage in rats. None of the deuterated Tris-BP or Bis-BP analogues significantly altered morphological evidence of nephrotoxicity compared to the protio compounds. On the other hand, some of the selectively methylated analogues were much less nephrotoxic. Although the C1-methyl analogues of both Tris-BP and Bis-BP were as potent nephrotoxicants as Tris-BP and Bis-BP, respectively, neither the C2-methyl nor the C3-methyl analogues were significantly nephrotoxic. Interestingly, whereas the 3,4-dibromobutyl homologue of Tris-BP was not nephrotoxic, the corresponding 3,4-dibromobutyl-Bis homologue was as nephrotoxic as Bis-BP. Additional investigations with treatments that are known to decrease nephrotoxicity caused by several halogenated alkenes, showed that L-(alpha S,5S)-alpha-amino-3-chloro-4,5-dihydro-5-isoxazoleacetic acid (AT-125) and aminooxyacetic acid were without effects on Tris-BP induced renal damage. Probenecid pretreatment led to a reduction in Tris-BP and Bis-BP tubular necrosis, these effects may be related to inhibition of Bis-BP uptake in the kidney. It appears that the cysteine conjugate beta-lyase pathway is not involved in the generation of nephrotoxic metabolites of Tris-BP. PMID:3375186

  18. South Asian summer monsoon variability during the last ˜54 kyrs inferred from surface water salinity and river runoff proxies

    NASA Astrophysics Data System (ADS)

    Gebregiorgis, D.; Hathorne, E. C.; Sijinkumar, A. V.; Nath, B. Nagender; Nürnberg, D.; Frank, M.

    2016-04-01

    The past variability of the South Asian Monsoon is mostly known from records of wind strength over the Arabian Sea while high-resolution paleorecords from regions of strong monsoon precipitation are still lacking. Here, we present records of past monsoon variability obtained from sediment core SK 168/GC-1, which was collected at the Alcock Seamount complex in the Andaman Sea. We utilize the ecological habitats of different planktic foraminiferal species to reconstruct freshwater-induced stratification based on paired Mg/Ca and δ18O analyses and to estimate seawater δ18O (δ18Osw). The difference between surface and thermocline temperatures (ΔT) and δ18Osw (Δδ18Osw) is used to investigate changes in upper ocean stratification. Additionally, Ba/Ca in G. sacculifer tests is used as a direct proxy for riverine runoff and sea surface salinity (SSS) changes related to monsoon precipitation on land. Our Δδ18Osw time series reveals that upper ocean salinity stratification did not change significantly throughout the last glacial suggesting little influence of NH insolation changes. The strongest increase in temperature gradients between the mixed layer and the thermocline is recorded for the mid-Holocene and indicate the presence of a significantly shallower thermocline. In line with previous work, the δ18Osw and Ba/Ca records demonstrate that monsoon climate during the LGM was characterized by a significantly weaker southwest monsoon circulation and strongly reduced runoff. Based on our data the South Asian Summer Monsoon (SAM) over the Irrawaddyy strengthened gradually after the LGM beginning at ∼18 ka. This is some 3 kyrs before an increase of the Ba/Ca record from the Arabian Sea and indicates that South Asian Monsoon climate dynamics are more complex than the simple N-S displacement of the ITCZ as generally described for other regions. Minimum δ18Osw values recorded during the mid-Holocene are in phase with Ba/Ca marking a stronger monsoon precipitation

  19. South Asian summer monsoon variability during the last ˜54 kyrs inferred from surface water salinity and river runoff proxies

    NASA Astrophysics Data System (ADS)

    Gebregiorgis, D.; Hathorne, E. C.; Sijinkumar, A. V.; Nath, B. Nagender; Nürnberg, D.; Frank, M.

    2016-04-01

    The past variability of the South Asian Monsoon is mostly known from records of wind strength over the Arabian Sea while high-resolution paleorecords from regions of strong monsoon precipitation are still lacking. Here, we present records of past monsoon variability obtained from sediment core SK 168/GC-1, which was collected at the Alcock Seamount complex in the Andaman Sea. We utilize the ecological habitats of different planktic foraminiferal species to reconstruct freshwater-induced stratification based on paired Mg/Ca and δ18O analyses and to estimate seawater δ18O (δ18Osw). The difference between surface and thermocline temperatures (ΔT) and δ18Osw (Δδ18Osw) is used to investigate changes in upper ocean stratification. Additionally, Ba/Ca in G. sacculifer tests is used as a direct proxy for riverine runoff and sea surface salinity (SSS) changes related to monsoon precipitation on land. Our Δδ18Osw time series reveals that upper ocean salinity stratification did not change significantly throughout the last glacial suggesting little influence of NH insolation changes. The strongest increase in temperature gradients between the mixed layer and the thermocline is recorded for the mid-Holocene and indicate the presence of a significantly shallower thermocline. In line with previous work, the δ18Osw and Ba/Ca records demonstrate that monsoon climate during the LGM was characterized by a significantly weaker southwest monsoon circulation and strongly reduced runoff. Based on our data the South Asian Summer Monsoon (SAM) over the Irrawaddyy strengthened gradually after the LGM beginning at ˜18 ka. This is some 3 kyrs before an increase of the Ba/Ca record from the Arabian Sea and indicates that South Asian Monsoon climate dynamics are more complex than the simple N-S displacement of the ITCZ as generally described for other regions. Minimum δ18Osw values recorded during the mid-Holocene are in phase with Ba/Ca marking a stronger monsoon precipitation

  20. Northern Component Water Variability Over the Past 21 kyr: High-resolution Records From Eirik and Gardar Drifts

    NASA Astrophysics Data System (ADS)

    Elmore, A. C.; Wright, J. D.; Neitzke, L. C.; Henderson, S.

    2007-12-01

    Northern Component Water (NCW; analogous to modern NADW) circulation has been described as bi-modal with shallow flow associated with the last glacial maximum (LGM) and a deeper current associated with the Holocene. We have generated foraminiferal stable isotope records as well as grain size records from cores collected on the Eirik and southern Gardar Drifts. Our records show that the shallow mode of NCW circulation persisted through the deglacial and into the early Holocene. Beginning around 9 ka (calendar age), the core of NCW began to descend, reaching its present position by 8 ka. This is consistent with Fagel et al. (2002) who argued that Denmark Strait overflow, which is the densest contributor to NCW, began around 8.5 ka. We note also that benthic foraminiferal oxygen isotope data from Gardar diverged from the Eirik data during the late deglacial and early Holocene, and may indicate the resumption of flow over the Iceland-Faroe Ridge and/or through the Faroe Bank Channel. Higher frequency changes in the benthic foraminiferal carbon isotopes during the late glacial through deglacial record interruptions in NCW flow. A 1 per mil decrease occurred from 18 to 16 ka. This decrease was associated with a 4-fold decrease in sedimentation rates and is interpreted as a further shoaling of NCW and influx of AABW. The start of this decrease predates the H1 event but the carbon isotope decrease continued through the H1 event, reaching minimum values at 16.3 ka. Between 16.3 and 14.0 ka, carbon isotope values fluctuated between 0 and 0.75 per mil. Sedimentation rates increased sharply to rates >25 cm/kyr, indicating that the current was actively supplying sediments with minimal winnowing. At 14 ka, carbon isotope values increased to ~1 per mil, associated with the Bolling-Allerod warming, and fluctuated about a mean of 1 per mil until the beginning of the Younger Dryas at 12.5ka. During the Younger Dryas, benthic carbon isotope values decreased by 0.5 per mil, signaling

  1. Orbital-scale stratigraphy and paleoenvironmental changes in the Japan Sea during the last 230 kyr based on oxygen and carbon isotopes of benthic foraminifera

    NASA Astrophysics Data System (ADS)

    Nakahashi, K.; Kimoto, K.; Tada, R.; Tamaki, K.

    2009-12-01

    Paleoceanographic conditions in the Japan Sea changed drastically during the late Quaternary in association with orbital and suborbital cycles and glacio-eustatic sea level changes. However, few studies had been examined long-term sediment records older than last intergracial period because of the lack of long cores which contains continuous paleoclimatic records and difficulties reconstructing high-resolution age models. Especially disappearance of benthic foraminifers by euxinic bottom water conditions during glacial maxima makes it difficult to understand specific bottom water environments. In this study, we reconstructed benthic foraminiferal stable isotopic stratigraphy of the Japan Sea core with the resolution in 2 kyr. and compared the global stack of benthic foraminfieral δ18O curve (LR04, Lisiecki & Raymo, 2005). The investigated core MD01-2408, was recovered from 806 m water depth, off Akita Prefecture during IMAGES VII cruise. It had recorded continuous paleoenvironmental histories during the last 230 kyr through the core. This core was mainly consisted of alternating layers of homogeneous light colored silty clay and laminated or bioturbated dark colored silty clay, occasionally intercalating volcanic ash layers. The most abundant benthic foraminiferal species are Uvigerina akitaensis, Angulogerina kokozuraensis and Islandiella norcrossi. Abundance of these species fluctuated drastically through the core. No benthic foraminifera is found in two dark layer intervals 4 ~ 5 mbsf and 25 ~ 25.5 mbsf, corresponding 15 ~ 25 kyr and 149 ~ 152 kyr, respectively, probably representing super anoxic bottom water conditions(Oba et al 1984 1991;Tada et al., 1999). δ18O of U. akitaensis and A. kokozuraensis showed a similar values with a precision of ± 0.27‰ and it was inferred that both species had similar habitat. δ18O of both species in core MD01-2408 fluctuated with the range of 2‰ over 230 kyr. Although benthic δ18O stack of LR04 reached to 5 ‰ during

  2. Evidence for a late Holocene warm and humid climate period and environmental characteristics in the arid zones of northwest China during 2.2 ˜ 1.8 kyr B.P.

    NASA Astrophysics Data System (ADS)

    Bao, Yang; Braeuning, Achim; Yafeng, Shi; Fahu, Chen

    2004-01-01

    Natural archives like ice cores, tree rings, river and lake sediments, lake terraces, and paleosols and also historical documents witness aspects of climate change in northwestern China during the Western and Eastern Han Dynasties (206 B.C.-220 A.D.). Reconstructions of decadal averages of annual mean temperature and precipitation fluctuations were derived from variations of δ18O and net accumulation rates in the Guliya ice core. They revealed a period of higher temperatures and higher precipitation than today, which affected vast areas of northwestern China during the period of interest until the fifth century A.D. These conditions resulted in a marked increase in the discharge of big endorheic river systems, such as the Tarim, the Keriya and the Manas rivers. As a consequence, water levels in appendant terminal lakes rose, e.g., at Lop Nor, Manas Lake, and Baijian Hu. Lake surface areas expanded, and lake desalting occurred also at lakes in intermontane basins, such as Balikun Hu and Qinghai Lake. The warm and moist conditions during the Western and Eastern Han Dynasties might have been responsible for the large-scale agricultural production and the local socioeconomic boom that is documented by the occurrence of the famous ruin groups of Loulan, Niya, and Keriya. The following desiccation phase led to a deterioration of water resources, and most oases tended to dry out and were finally abandoned. The appearance, development, flourishing, and final abandonment of each great ruin group are closely associated with regional climate change at that time.

  3. Evidence for Mid-latitude Lake-level Response to Millennial and Milankovitch Forcing: The Past 65 kyr at Mono Lake, CA

    NASA Astrophysics Data System (ADS)

    Zimmerman, S. H.; Hemming, S. R.; Hemming, N. G.; Pearl, C.; Hartin, C.

    2007-12-01

    Mono Lake, California (38°N, 119°W) lies in the western Great Basin in the rain shadow of the Sierra Nevada, and preserves high-elevation strandlines indicating that lake level was much higher in the past. Comparison of stratigraphy-based relative lake level with geochemical records from three sites around the lake (overlapping between 40-32 ka), reveals high carbonate fluxes at times of high lake level on precessional (20-kyr) time-scales. Although absolute values are different in different locations representing slightly different paleoenvironmental settings, the timing and relative amplitude of changes are similar on orbital as well as millennial time-scales. Within the established regional 100-kyr pattern of wet glacials-dry interglacials, we find that during the last glaciation (Marine Isotope Stages (MIS) 4-3-2) times of high spring insolation were generally wetter, represented by lacustrine silts rather than sand facies and greater carbonate flux to the deep-lake sediments. This interval is also characterized by high-amplitude variability. Age model errors of ~1 kyr or less during MIS 3 allow correlation of sharp increases in carbonate deposition with Dansgaard-Oeschger warmings in Greenland. If the high carbonate-high lake relationship holds at millennial time-scales, this would indicate increases in lake level coeval with warming, opposite to the 100-kyr regional pattern. Alternatively, carbonate precipitation may be triggered by lake level peaking and beginning to drop, suggesting that lake level began to fall about the time of Greenland warming. Regardless, the correspondence in phasing between Mono Lake and Greenland, also demonstrated in the nearby Santa Barbara Basin, suggests that Mono Lake responded rapidly to the atmosphere-ocean changes invoked to explain the global nature of the D-O events. The suppression of this variability during times of low spring insolation may be due to a reduced sensitivity of the recorder, and we are looking for

  4. A 300 kyr Record of Geomagnetic Excursions and Paleointensity From the Irminger Basin: Candidates for Mono Lake, Laschamp, Iceland Basin, Jamaica and Pringle Falls?

    NASA Astrophysics Data System (ADS)

    Channell, J. E.

    2004-12-01

    Sediments recovered at ODP Site 919, off east Greenland, record geomagnetic directional excursions at 33 ka and 40 ka (Mono Lake and Laschamp), and at 187 ka (Iceland Basin), 208 ka (Jamaica?) and at 220 ka (Pringle Falls). U-channel records are augmented by 1-cm discrete samples collected back-to-back alongside the u-channel troughs. Deconvolution of the u-channel records yields records that can be closely matched to the discrete sample data. The age-model based on planktic oxygen isotope data (St. John et al., Marine Geology, in press) is consistent with the relative paleointensity record and the recognition of Ash Layer 2 (55 ka). The results indicate that the Mono Lake and Laschamp excursions, and the Iceland Basin and Pringle Falls (and perhaps also Jamaica), are distinct excursions, rarely recorded together in individual stratigraphic sections. Why are they recorded at ODP Site 919? Mean sedimentation rates are 22 cm/kyr in MIS 3 where Mono Lake/Laschamp are recorded, but sedimentation rates do not appear to be especially high in MIS 7 (13 cm/kyr) where candidates for Iceland Basin/Jamaica/Pringle Falls are recorded.

  5. An 80 kyr-long continuous speleothem record from Dim Cave, SW Turkey with paleoclimatic implications for the Eastern Mediterranean.

    PubMed

    Ünal-İmer, Ezgi; Shulmeister, James; Zhao, Jian-Xin; Uysal, I Tonguç; Feng, Yue-Xing; Nguyen, Ai Duc; Yüce, Galip

    2015-01-01

    Speleothem-based stable isotope records are valuable in sub-humid and semi-arid settings where many other terrestrial climate proxies are fragmentary. The Eastern Mediterranean is one such region. Here we present an 80-kyr-long precisely-dated (by U-series) and high-resolution oxygen (δ(18)O) and carbon (δ(13)C) records from Dim Cave (~36°N) in SW Turkey. The glacial-interglacial δ(18)O variations in the Dim Cave speleothem are best explained in terms of changes in the trajectories of winter westerly air masses. These are along a northerly (European) track (isotopically less depleted) during the early last glaciation but are gradually depressed southward closer to the modern westerly track along the North African coast (more depleted) after c.50 kyr and remain in the southern track through the Last Glacial Maximum. The southward displacement of the westerly track reflects growth of the Fennoscandian ice sheet and its impact on westerly wind fields. Changes in δ(13)C are interpreted as reflecting soil organic matter composition and/or thickness. δ(13)C values are significantly more negative in interglacials reflecting active carbonic acid production in the soil and less negative in glacial times reflecting carbonate rock values. Several Heinrich events are recorded in the Dim record indicating intensification of westerly flow across this part of the EM. PMID:26337921

  6. Bulk and Compound-Specific Isotope Analysis of Long-Chain, n-alkanes From a 85-kyr Core From Lake Peten Itza, Guatemala

    NASA Astrophysics Data System (ADS)

    Mays, J. L.; Brenner, M.; Bush, M. B.; Correa, A.; Curtis, J. H.; Hodell, D. A.

    2007-12-01

    Drill cores obtained from Lake Petén Itzá, Guatemala, contain a ~85-kyr record of terrestrial climate from lowland Central America. Variations in sediment lithology suggest rapid changes in precipitation during the last glacial and deglacial periods. Previous work in nearby Lake Quexil demonstrated the utility of using the carbon isotopic compositions of leaf wax n-alkanes to infer changes in terrestrial vegetation (Huang et al., 2001). Here we report carbon isotopes of bulk organic and long-chain n-alkanes in 60 samples to reconstruct changes in the relative proportion of C3 and C4 biomass in the watershed under changing climate and atmospheric CO2 conditions during the past 85 kyrs. Compound-specific carbon isotope results are compared directly with pollen analysis from the same samples. Huang, Y., F.A. Street-Perrott, S.E. Metcalfe, M. Brenner, M. Moreland, and K.H. Freeman. 2001. Climate change as the dominant control on glacial-interglacial variations in C3 and C4 plant abundance. Science 293:1647-1651.

  7. Man the Fat Hunter: The Demise of Homo erectus and the Emergence of a New Hominin Lineage in the Middle Pleistocene (ca. 400 kyr) Levant

    PubMed Central

    Ben-Dor, Miki; Gopher, Avi; Hershkovitz, Israel; Barkai, Ran

    2011-01-01

    The worldwide association of H. erectus with elephants is well documented and so is the preference of humans for fat as a source of energy. We show that rather than a matter of preference, H. erectus in the Levant was dependent on both elephants and fat for his survival. The disappearance of elephants from the Levant some 400 kyr ago coincides with the appearance of a new and innovative local cultural complex – the Levantine Acheulo-Yabrudian and, as is evident from teeth recently found in the Acheulo-Yabrudian 400-200 kyr site of Qesem Cave, the replacement of H. erectus by a new hominin. We employ a bio-energetic model to present a hypothesis that the disappearance of the elephants, which created a need to hunt an increased number of smaller and faster animals while maintaining an adequate fat content in the diet, was the evolutionary drive behind the emergence of the lighter, more agile, and cognitively capable hominins. Qesem Cave thus provides a rare opportunity to study the mechanisms that underlie the emergence of our post-erectus ancestors, the fat hunters. PMID:22174868

  8. An 80 kyr-long continuous speleothem record from Dim Cave, SW Turkey with paleoclimatic implications for the Eastern Mediterranean

    PubMed Central

    Ünal-İmer, Ezgi; Shulmeister, James; Zhao, Jian-Xin; Tonguç Uysal, I.; Feng, Yue-Xing; Duc Nguyen, Ai; Yüce, Galip

    2015-01-01

    Speleothem-based stable isotope records are valuable in sub-humid and semi-arid settings where many other terrestrial climate proxies are fragmentary. The Eastern Mediterranean is one such region. Here we present an 80-kyr-long precisely-dated (by U-series) and high-resolution oxygen (δ18O) and carbon (δ13C) records from Dim Cave (~36°N) in SW Turkey. The glacial-interglacial δ18O variations in the Dim Cave speleothem are best explained in terms of changes in the trajectories of winter westerly air masses. These are along a northerly (European) track (isotopically less depleted) during the early last glaciation but are gradually depressed southward closer to the modern westerly track along the North African coast (more depleted) after c.50 kyr and remain in the southern track through the Last Glacial Maximum. The southward displacement of the westerly track reflects growth of the Fennoscandian ice sheet and its impact on westerly wind fields. Changes in δ13C are interpreted as reflecting soil organic matter composition and/or thickness. δ13C values are significantly more negative in interglacials reflecting active carbonic acid production in the soil and less negative in glacial times reflecting carbonate rock values. Several Heinrich events are recorded in the Dim record indicating intensification of westerly flow across this part of the EM. PMID:26337921

  9. Centennial- to millennial-scale ice-ocean interactions in the subpolar northeast Atlantic 18-41 kyr ago

    NASA Astrophysics Data System (ADS)

    Hall, I. R.; Colmenero-Hidalgo, E.; Zahn, R.; Peck, V. L.; Hemming, S. R.

    2011-06-01

    In order to monitor the evolution of the British-Irish Ice Sheet (BIIS) and its influence in surface ocean structure during marine isotopic stages (MIS) 2 and 3, we have analyzed the sediments recovered in core MD04-2829CQ (Rosemary Bank, north Rockall Trough, northeast Atlantic) dated between ˜41 and ˜18 ka B.P. Ice-rafted debris flux and composition, 40Ar/39Ar ages of individual hornblende grains, multispecies planktonic stable isotope records, planktonic foraminifera assemblage data and faunal-based sea surface temperatures (SSTs) demonstrate a close interaction between BIIS dynamics and surface ocean structure and water properties in this region. The core location lies beneath the North Atlantic Current (NAC) and is ideal for monitoring the shifts in the position of its associated oceanic fronts, as recorded by faunal changes. These data reveal a succession of BIIS-sourced iceberg calving events related to low SST, usually synchronous with dramatic changes in the composition of the planktonic foraminifera assemblage and with variations in the stable isotope records of the taxa Neogloboquadrina pachyderma (sinistral coiling) and Globigerina bulloides. The pacing of the calving events, from typically Dansgaard-Oeschger millennial timescales during late MIS 3 to multicentennial cyclicity from ˜28 ka B.P., represents the build-up of the BIIS and its growing instability toward Heinrich Event (HE) 2 and the Last Glacial Maximum. Our data confirm the strong coupling between BIIS instabilities and the temperature and salinity of surface waters in the adjacent northeast Atlantic and demonstrate the BIIS's ability to modify the NAC on its flow toward the Nordic Seas. In contrast, subsurface water masses were less affected except during the Greenland stadials that contain HEs, when most intense water column reorganizations occurred simultaneously with the deposition of cream-colored carbonate sourced from the Laurentide Ice Sheet.

  10. Biogeochemistry of mineral-organic associations across a long-term mineralogical soil gradient (0.3-4100 kyr), Hawaiian Islands

    NASA Astrophysics Data System (ADS)

    Mikutta, Robert; Schaumann, Gabriele E.; Gildemeister, Daniela; Bonneville, Steeve; Kramer, Marc G.; Chorover, Jon; Chadwick, Oliver A.; Guggenberger, Georg

    2009-04-01

    Organic matter (OM) in mineral-organic associations (MOAs) represents a large fraction of carbon in terrestrial ecosystems which is considered stable against biodegradation. To assess the role of MOAs in carbon cycling, there is a need to better understand (i) the time-dependent biogeochemical evolution of MOAs in soil, (ii) the effect of the mineral composition on the physico-chemical properties of attached OM, and (iii) the resulting consequences for the stabilization of OM. We studied the development of MOAs across a mineralogical soil gradient (0.3-4100 kyr) at the Hawaiian Islands that derived from basaltic tephra under comparable climatic and hydrological regimes. Mineral-organic associations were characterized using biomarker analyses of OM with chemolytic methods (lignin phenols, non-cellulosic carbohydrates) and wet chemical extractions, surface area/porosity measurements (N 2 at 77 K and CO 2 at 273 K), X-ray photoelectron spectroscopy (XPS), transmission electron microscopy (TEM), and differential scanning calorimetry (DSC). The results show that in the initial weathering stage (0.3 kyr), MOAs are mainly composed of primary, low-surface area minerals (olivine, pyroxene, feldspar) with small amounts of attached OM and lignin phenols but a large contribution of microbial-derived carbohydrates. As high-surface area, poorly crystalline (PC) minerals increase in abundance during the second weathering stage (20-400 kyr), the content of mineral-associated OM increased sharply, up to 290 mg C/g MOA, with lignin phenols being favored over carbohydrates in the association with minerals. In the third and final weathering stage (1400-4100 kyr), metastable PC phases transformed into well crystalline secondary Fe and Al (hydr)oxides and kaolin minerals that were associated with less OM overall, and depleted in both lignin and carbohydrate as a fraction of total OM. XPS, the N 2 pore volume data and OM-mineral volumetric ratios suggest that, in contrast to the

  11. Trailer siting issues: BP Texas City.

    PubMed

    Kaszniak, Mark; Holmstrom, Donald

    2008-11-15

    On 23 March, 2005, a series of explosions and fires occurred at the BP Texas City refinery during the startup of an isomerization (ISOM) process unit. Fifteen workers were killed and about 180 others were injured. All of the fatalities were contract workers; the deaths and most of the serious injuries occurred in and around temporary office trailers that had been sited near a blowdown drum and stack open to the atmosphere as part of ongoing turnaround activities in an adjacent unit. Due to problems that developed during the ISOM startup, flammable hydrocarbon liquid overfilled the blowdown drum and stack which resulted in a geyser-like release out the top into the atmosphere. The flammable hydrocarbons fell to the ground releasing vapors that were likely ignited from a nearby idling diesel pickup truck. A total of 44 trailers were damaged by the blast pressure wave that propagated through the refinery when the vapor cloud exploded. Thirteen trailers were totally destroyed and workers were injured in trailers as far as 479ft away from the release. The focus of this paper will be on trailer siting issues, including: need for work/office trailers within process units, adequacy of risk analysis methods in API RP 752, and minimum safe distance requirements PMID:18294765

  12. Transcriptional Regulation of CRD-BP by c-myc

    PubMed Central

    Noubissi, Felicite K.; Nikiforov, Mikhail A.; Colburn, Nancy; Spiegelman, Vladimir S.

    2010-01-01

    The coding region determinant binding protein, CRD-BP, is a multifunctional RNA binding protein involved in different processes such as mRNA turnover, translation control, and localization. It is mostly expressed in fetal and neonatal tissues, where it regulates many transcripts essential for normal embryonic development. CRD-BP is scarce or absent in normal adult tissues but reactivated and/or overexpressed in various neoplastic and preneoplastic tumors and in most cell lines. Its expression has been associated with the most aggressive form of some cancers. CRD-BP is an important regulator of different genes including a variety of oncogenes or proto-oncogenes (c-myc, β-TrCP1, GLI1, etc.). Regulation of CRD-BP expression is critical for proper control of its targets as its overexpression may play an important role in abnormal cell proliferation, suppression of apoptosis, invasion, and metastasis. Molecular bases of the regulatory mechanisms governing CRD-BP expression are still not completely elucidated. In this article, we have identified c-myc as a novel transcriptional regulator of CRD-BP. We show that c-myc binds to CRD-BP promoter and induces its transcription. This induction of CRD-BP expression contributes to the role of c-myc in the regulation of translation, increase in cell size, and acceleration of cell cycle progression via a mechanism involving upregulation of β-TrCP1 levels and activities and accelerated degradation of PDCD4. PMID:21779431

  13. Yarn Quality Prediction Based on Improved BP Neural Network

    NASA Astrophysics Data System (ADS)

    Yang, Jian-Guo; Xiong, Jing-Wei; Xun, Lan

    Aiming at the key quality indexes xbt in spinning processing is caused by many complex and interactions factors. A xbt prediction model is put forward based on the PSO-BP neural network, which adjusts weights of BP neural network using particle swarm optimization (PSO) rather than the traditional gradient descent method, is used to improve the convergence speed of neural network and the ability of getting the global optimal solution. As the object of a large number of field detection data in a spinning workshop, the results show that, compared with the traditional BP algorithm and GA-BP algorithm, the PSO-BP neural network can obvious improve yarn quality prediction model precision and stability.

  14. Terrestrial environmental changes around the Gulf of Aden over the last 210 kyr deduced from the sediment n-alkane record: Implications for the dispersal of Homo sapiens

    NASA Astrophysics Data System (ADS)

    Isaji, Yuta; Kawahata, Hodaka; Ohkouchi, Naohiko; Murayama, Masafumi; Tamaki, Kensaku

    2015-03-01

    We analyzed long-chain (C25-C36) n-alkanes and pollen grains in sediments from the Gulf of Aden covering the last 212 kyr to reconstruct the surrounding terrestrial environment, a critical region for the dispersal of Homo sapiens. Substantial increases in the flux of n-alkanes during 200-185, 120-95, and 70-50 ka were interpreted to indicate enhanced vegetation biomass in the Arabian Peninsula and the northern part of the Horn of Africa or increase in lithogenic material inputs. Periods of enhanced n-alkane flux occurred during or immediately after pluvial episodes, indicating that the increased precipitation may have induced substantially enhanced vegetation biomass, creating favorable conditions for Homo sapiens. Additionally, vegetation may have increased due to moderate precipitation unrecorded by speleothems or in accordance with the lowering of sea level, indicating that the dispersal might have been possible even after the shift to an arid environment indicated by the speleothems.

  15. Anti-BP180-type mucous membrane pemphigoid immunoglobulin G shows heterogeneity of internalization of BP180/collagen XVII into keratinocyte cytoplasm.

    PubMed

    Imanishi, Akiko; Imanishi, Hisayoshi; Hiroyasu, Sho; Ozawa, Toshiyuki; Koga, Hiroshi; Ishii, Norito; Kitajima, Yasuo; Hashimoto, Takashi; Tsuruta, Daisuke

    2016-06-01

    Anti-BP180-type mucous membrane pemphigoid (BP180-MMP) is a rare autoimmune subepidermal blistering disease that targets the C terminus of BP180/collagen XVII. Currently, the pathomechanism of BP180-MMP is not well understood. We reported previously that immunoglobulin G (IgG) from patients with bullous pemphigoid (BP) can induce internalization of BP180 via a macropinocytic pathway, which depletes BP180 and weakens epidermal cell-matrix integrity. The purpose of the present study was to elucidate the pathomechanism of BP180-MMP. Immunohistochemistry of biopsy specimens from two patients with BP180-MMP revealed that one patient had BP180 internalization, but the other did not. In live-cell imaging using IgG from patients with BP180-MMP on several keratinocyte cell lines, IgG from only three out of the seven patients was associated with BP180 internalization into the cytoplasm. Our results suggest that IgG from patients with BP180-MMP shows heterogeneity of internalization of BP180. This variability in BP180 internalization in patients with BP or BP180-MMP may lead to differences in clinical presentation. PMID:26658728

  16. Development of coccolithophore-based transfer functions in the western Mediterranean sea: a sea surface salinity reconstruction for the last 15.5 kyr

    NASA Astrophysics Data System (ADS)

    Ausín, B.; Hernández-Almeida, I.; Flores, J.-A.; Sierro, F.-J.; Grosjean, M.; Francés, G.; Alonso, B.

    2015-12-01

    A new data set of 88 marine surface sediment samples and related oceanic environmental variables (temperature, salinity, chlorophyll a, oxygen, etc.) was studied to quantify the relationship between assemblages of coccolithophore species and modern environmental conditions in the western Mediterranean Sea and the Atlantic Ocean, west of the Strait of Gibraltar. Multivariate statistical analyses revealed that coccolithophore species were primarily related to sea surface salinity (SSS), explaining an independent and significant proportion of variance in the coccolithophore data. A quantitative coccolithophore-based transfer function to estimate SSS was developed using the modern analog technique (MAT) and weighted-averaging partial least square regression (WA-PLS). The bootstrapped regression coefficient (R2boot) was 0.85MAT and 0.80WA-PLS, with a root-mean-square error of prediction (RMSEP) of 0.29MAT and 0.30WA-PLS (psu). The resulting transfer function was applied to fossil coccolithophore assemblages in the highly resolved (~ 65 years) sediment core CEUTA10PC08 from the Alboran Sea (western Mediterranean) in order to reconstruct SSS for the last 25 kyr. The reliability of the reconstruction was evaluated by assessing the degree of similarity between fossil and modern coccolithophore assemblages and by a comparison of reconstructions with fossil ordination scores. Analogs were poor for the stadials associated with Heinrich events 2 and 1 and part of the Last Glacial Maximum. Good analogs indicate a more reliable reconstruction of the SSS for the last 15.5 kyr. During this period, several millennial and centennial SSS changes were observed and associated with sea-level oscillations and variations in the Atlantic Water entering the Alboran.

  17. 200 kyrs of sediment deposition in the coastal lowlands of Bol'shoy Lyakhovsky - a record of deglaciation of the New Siberian Islands?

    NASA Astrophysics Data System (ADS)

    Schwamborn, Georg; Schirrmeister, Lutz; Wetterich, Sebastian; Fuchs, Margret; Meyer, Hanno; Siegert, Christine

    2016-04-01

    Bol'shoy Lyakhovsky, the southernmost island of the New Siberian Archipelago, holds the longest record of palaeoenvironmental history in the North Siberian Arctic. It stretches back to ~200 kyr before present. Next to palaeosols and floodplain deposits it includes prominent thermokarst deposits from the Last Interglacial and Yedoma (Ice Complex) sections from the Last Glacial. Yet, it is unknown, whether or not the depositional history of the area is affected by the deglaciation of the northern part of the New Siberian Archipelago. Potentially, it could give insights into the break-up of the proposed MIS 6 ice sheet located on the East Siberian Sea shelf. Polymodal particle size distributions in the sediment record suggest that more than one transport mechanism drove sediment accumulation from more than one source. From a cryo-sedimentological data set we focus on the mineral composition (63-125 μm fraction) to determine the provenance of the deposits and to identify possible changes of transport pathways. Complementary, we use pore ice hydrochemical data to track changes of the weathering solution preserved in permafrost. Presumably, the both complement each other, since the weathering products largely depend on the mineral composition. We conclude that the observed trends in the heavy mineral and pore ice chemical data of the frozen ground record reflect short-distance material transport from weathered bedrock to the depositional area. In this sense no portion of the 200 kyr record seems to be affected by the presumed MIS 6 ice sheet break-up, which at that time happened about 250 km north of the study site.

  18. Possible enhancement of BP180 autoantibody production by herpes zoster.

    PubMed

    Kamiya, Koji; Aoyama, Yumi; Suzuki, Takahiro; Niwa, Haruo; Horio, Ai; Nishio, Eiichi; Tokura, Yoshiki

    2016-02-01

    Bullous pemphigoid (BP) is an autoimmune blistering disease caused by autoantibodies against type XVII collagen/BP180 (BP180). Although the mechanisms of autoantibody production remain to be elucidated, herpes virus infections have been identified as a possible triggering factor for pemphigus. We report a case of herpes zoster (HZ) having anti-BP180 serum antibodies. The patient developed sudden-onset, tense blisters and edematous erythema on the right anterior chest, shoulder and upper back. Histopathology showed remarkable degeneration of keratinocytes, acantholysis and blister formation with ballooning cells, indicating herpes virus infection. A polymerase chain reaction analysis of varicella zoster virus (VZV) was positive in crusts and effusions from the skin lesions, confirming the definitive diagnosis of HZ. Notably, we found that the patient had anti-BP180 serum antibodies in association with the occurrence of HZ. After successful treatment with valacyclovir hydrochloride for 7 days, the serum levels of anti-BP180 antibodies decreased in accordance with the improvement of skin lesions. These findings suggest that the production of anti-BP180 antibodies could be triggered by the reactivation of VZV. PMID:26212492

  19. Methanococcus vannielii selenium-binding protein (SeBP): Chemical reactivity of recombinant SeBP produced in Escherichia coli

    PubMed Central

    Patteson, Kemberly G.; Trivedi, Neel; Stadtman, Thressa C.

    2005-01-01

    A selenium-binding protein (SeBP) from Methanococcus vannielii was recently identified, and its gene was isolated and overexpressed in Escherichia coli [Self, W. T., Pierce, R. & Stadtman, T. C. (2004) IUBMB Life 56, 501–507]. SeBP and recombinant SeBP (rSeBP) migrated as ≈42-kDa species on native gels and as ≈33-kDa species on SDS gels. rSeBP consists of identical 8.8-kDa subunits, each containing a single cysteine residue. rSeBP isolated in the absence of reducing agents contained oxidized cysteine (89%) and very little bound selenium (0.05 eq or less per subunit). Complete reduction of the oxidized cysteine residues in rSeBP with Tris(2-carboxyethyl)phosphine required addition of a denaturant, such as 1 M guanidine-hydrochloride. With selenite as the selenium source and the isolated reduced protein as sole reductant, binding of one selenium per tetramer under anaerobic conditions required four cysteine thiol groups, one on each subunit. In the corresponding reaction, with reduced glutathione (GSH), equimolar amounts of selenodiglutathione (GSSeSG) and glutathione disulfide are formed from selenite and 4 GSH. At GSH-to-selenite ratios >4:1, conversion of GSSeSG to a perselenide derivative, GSSe–, occurs. However, with the reduced rSeBP as sole electron donor in the reaction with selenite, further conversion of the R-SSeS-R product apparently did not occur. Prior alkylation of the cysteine thiol groups in reduced rSeBP prevented selenite reduction and selenium binding under comparable conditions. PMID:16103372

  20. Evaluation of the Specificity of BP3385 for Bordetella pertussis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    BP3385 has been proposed as a diagnostic PCR target for discriminating between Bordetella pertussis and other Bordetella species that also infect humans. Our results demonstrate this gene is also present in some strains of Bordetella hinzii and Bordetella bronchiseptica....

  1. Surface nitrate utilization in the Bering sea since 180 kA BP: Insight from sedimentary nitrogen isotopes

    NASA Astrophysics Data System (ADS)

    Riethdorf, Jan-Rainer; Thibodeau, Benoit; Ikehara, Minoru; Nürnberg, Dirk; Max, Lars; Tiedemann, Ralf; Yokoyama, Yusuke

    2016-03-01

    We present high-resolution records of sedimentary nitrogen (δ15Nbulk) and carbon isotope ratios (δ13Cbulk) from piston core SO201-2-85KL located in the western Bering Sea. The records reflect changes in surface nitrate utilization and terrestrial organic matter contribution in submillennial resolution that span the last 180 kyr. The δ15Nbulk record is characterized by a minimum during the penultimate interglacial indicating low nitrate utilization (~62-80%) despite the relatively high export production inferred from opal concentrations along with a significant reduction in the terrestrial organic matter fraction (mterr). This suggests that the consumption of the nitrate pool at our site was incomplete and even more reduced than today (~84%). δ15Nbulk increases from Marine Isotope Stage (MIS) 5.4 and culminates during the Last Glacial Maximum, which indicates that nitrate utilization in the Bering Sea was raised during cold intervals (MIS 5.4, 5.2, 4) and almost complete during MIS 3 and 2 (~93-100%). This is in agreement with previous hypotheses suggesting that stronger glacial stratification reduced the nutrient supply from the subeuphotic zone, thereby increasing the iron-to-nutrient ratio and therefore the nitrate utilization in the mixed surface layer. Large variations in δ15Nbulk were also recorded from 180 to 130 ka BP (MIS 6), indicating a potential link to insolation and sea-level forcing and its related feedbacks. Millennial-scale oscillations were observed in δ15Nbulk and δ13Cbulk that might be related to Greenland interstadials.

  2. Bp'S Baku-Tbilisi-Ceyhan pipeline: the new corporate colonialism.

    PubMed

    Marriott, James; Muttitt, Greg

    2006-01-01

    An international campaign was waged questioning the benefits of BP's Baku-Tbilisi-Ceyhan pipeline in an effort to avoid a "zone of sacrifice" there. This article is an offshoot of that effort and explains the contemporary struggle over the pipeline project. The authors describe the project's background and evaluate the actual and potential impacts of the project in which they consider eight areas. They also assess BP's capacity to confront resistance to the pipeline. PMID:16867890

  3. Black Phosphorus (BP) Nanodots for Potential Biomedical Applications.

    PubMed

    Lee, Hyun Uk; Park, So Young; Lee, Soon Chang; Choi, Saehae; Seo, Soonjoo; Kim, Hyeran; Won, Jonghan; Choi, Kyuseok; Kang, Kyoung Suk; Park, Hyun Gyu; Kim, Hee-Sik; An, Ha Rim; Jeong, Kwang-Hun; Lee, Young-Chul; Lee, Jouhahn

    2016-01-13

    Recently, the appeal of 2D black phosphorus (BP) has been rising due to its unique optical and electronic properties with a tunable band gap (≈0.3-1.5 eV). While numerous research efforts have recently been devoted to nano- and optoelectronic applications of BP, no attention has been paid to promising medical applications. In this article, the preparation of BP-nanodots of a few nm to <20 nm with an average diameter of ≈10 nm and height of ≈8.7 nm is reported by a modified ultrasonication-assisted solution method. Stable formation of nontoxic phosphates and phosphonates from BP crystals with exposure in water or air is observed. As for the BP-nanodot crystals' stability (ionization and persistence of fluorescent intensity) in aqueous solution, after 10 d, ≈80% at 1.5 mg mL(-1) are degraded (i.e., ionized) in phosphate buffered saline. They showed no or little cytotoxic cell-viability effects in vitro involving blue- and green-fluorescence cell imaging. Thus, BP-nanodots can be considered a promising agent for drug delivery or cellular tracking systems. PMID:26584654

  4. Prevalence of the 4977-bp and 4408-bp mitochondrial DNA deletions in mesenteric arteries from patients with colorectal cancer.

    PubMed

    Li, Tao; Chen, Gui-Lan; Lan, Huan; Mao, Liang; Zeng, Bo

    2016-09-01

    Mitochondrial DNA (mtDNA) deletions are found in many diseased tissues and lead to impairment of mitochondrial functions. In this study, we found wide presence of the common 4977-bp and a novel 4408-bp deletion in the mtDNA of mesenteric arteries from patients with colorectal cancer. These two deletions were also detected in samples from healthy individuals. The content of mtDNA with the 4977-bp deletion was significantly lower in healthy controls than cancer-associated samples, and there was no significant difference for the 4408-bp deletion between the two groups. These results suggest that mtDNA in blood vessels around cancer cells may be strongly affected by oxidative stress and tend to accumulate more large-scale variations. PMID:26332461

  5. New Archaeointensity Result from Middle-Eastern China and Its Constraints on the Variation of the Geomagnetic Field during the last 6 kyr

    NASA Astrophysics Data System (ADS)

    Cai, S.; Jin, G.; Deng, C.; Tauxe, L.; Qin, H.; Pan, Y.; Zhu, R.

    2015-12-01

    Archaeomagnetic study is an effective way to understand the variation of the geomagnetic field over periods of hundreds to thousands of years. We have carried out archaeointensity studies on archaeological artifacts, including pottery fragments, bricks and baked clay, collected from several sites covering the middle to eastern part of China spanning the past ~6 kyr. We designed detailed rock magnetic and archaeointensity experiments in this study. Rock magnetic results indicate that the main magnetic carriers of these samples are stable magnetite or titanomagnetite with mainly fine particles of SD and SP. About 40% of the specimens in the paleointensity experiment pass the strict selection criteria and are considered to record robust intensity values. The virtual axial dipole moments (VADMs) of our sites range from ~2.5×1022 to ~15.8×1022 Am2. We record three low intensity values with VADMs of less than 3×1022 Am2, two of them comparable to the one reported by Cai et al. (2015) at ~3000 BCE while the other one comparable to those reported by Cai et al. (2014) at ~2200 BCE, which supply further evidence for the existence of 'DIPs' (decreases in paleoinetnsity) in China during the period of ~3000-2000 BCE. A high intensity value of ~16×1022 Am2 is recorded by our new data at ~1300 BCE, which may represent a new spike at this time period. The low and high values recorded by our new data update the six-fold variation between ~2200 BCE and ~1300 BCE discussed in Cai et al. (2014) to eight-fold, which may indicate a stronger geodynamic process during this period. Our new data are generally in good agreement with the published data in China, Japan and Korea at similar time periods, except the extreme low and high values discussed above, which will improve the Eastern Asian model greatly. The new data together with the published data suggest severe fluctuation of the geomagnetic field in Eastern Asia during the last 6 kyr. Vast quantities of reliable data are needed to

  6. Changes in seasonality of organic matter supply to the sea floor in the Eastern Equatorial Pacific over the last 260 kyr based on benthic foraminiferal assemblages

    NASA Astrophysics Data System (ADS)

    Ovsepyan, Ekaterina; Ivanova, Elena; Vidal, Laurence

    2015-04-01

    At present, short- and long-term variations of sea-surface biological productivity in the Eastern Equatorial Pacific have been extensively studied in order to evaluate changes in efficiency of biological carbon dioxide pump in the past. Benthic foraminiferal assemblages are investigated from the IMAGES giant Core MD02-2529 (8°12.5' N, 84° 07.5'W, w.d. 1619 m) off Costa Rica recovered the last 262 kyr according to oxygen isotope stratigraphy confirmed by 15 AMS14C dates in the upper part of the core. A predominance of high productivity species (e.g. hispid Uvigerina, U. peregrina, M. barleeanus, B. mexicana, C. carinata, T. delicata, C. wuellerstorfi, P. bulloides, Chilostomella spp., Globobulimina spp.) in benthic foraminiferal assemblages indicates intensive organic matter supply to the sea floor throughout the interval studied. CABFAC factor analysis applied for the species percentages matrix reveals that changes in taxonomic composition are described by three factors. Factor 1 is loaded mainly to U. hispida and in a less degree to U. peregrina. According to the modern ecological notion (e.g. Loubere, Fariduddin, 1999), U. hispida is associated with high and fairly constant organic matter flux to the seabed. Hence, high values of factor 1 reflect high productivity and low seasonality conditions. Factor 2 is loaded positively to U. peregrina and negatively to U. hispida. U. peregrina prefers slightly degraded organic matter, whereas U. hispida is abundant within the regions where organic matter is fresh and dominated by diatoms. Thus, we suppose that maxima of factor 2 mirror high productivity conditions with non-regular flux of organic matter to the sea floor with several events of phytoplankton blooms over the year (moderate seasonality). We believe that fresh organic matter derived from the photic layer underwent bacterial decomposition between multiple flux pulses and thereby contributed to thrift U. peregrina assemblages. Factor 3 is loaded positively to M

  7. Hydrological and thermal changes along the last 2.7 kyr in the central-western Mediterranean based on a multi-archive approach: speleothem and marine sediments

    NASA Astrophysics Data System (ADS)

    Cisneros, Mercè; Cacho, Isabel; Fornós, Joan J.; Moreno, Ana; Stoll, Heather; Edwards, Larry; Cheng, Hai; Frigola, Jaime

    2016-04-01

    Climatic conditions over the last 2.7 kyr are reconstructed in base to six speleothems from a cave in Mallorca and a group of sediment cores from the Menorca Rise. Speleothem records provide a solid chronology in base to high resolution U/Th dating. Both δ 13C and particularly δ 18O records show pronounced oscillations related to pre-roman times as the Dark Middle Ages, the Medieval Climate Anomaly and the Little Ice Age. The geochemical proxies from the six studied speleothems have been stacked in a unique record, which provides decadal-multidecadal resolution. In parallel, Sea Surface Temperature (SST) conditions have been reconstructed in base to Globigerina bulloides-Mg/Ca ratios from a group of multicore records, and they have been combined with δ18O data to reconstruct changes in the evaporation-precipitation ratio of the basin. These records have also been stacked in a single anomaly curve after the accurate construction of robust multi-proxy chronologies (Cisneros et al., under evaluation). The comparison of the marine and speleothem records reveal the occurrence of synchronous changes in both SST and humidity conditions over land along the last 2.7 kyr, although the relationship of these two climatic variables changed along the different climatic events. These results support that the driest conditions occurred during part of the Roma Classic Period and also during the Medieval Climate Anomaly when climate conditions were mostly warm, but also during the second part of the Little Ice Age when cold conditions dominated. This combined land-sea proxy approach offers a powerful tool to reconstruct past climate variability with highly precise chronologies. REFERENCES: M. Cisneros, I. Cacho, J. Frigola, M. Canals, P. Masqué, B. Martrat, F. Lirer, and G. Margaritelli. Sea surface temperature variability in the central-western Mediterranean Sea during the last 2700 years: a multi-proxy and multi-record approach. Submitted on 28 Sep 2015 for open discussion on

  8. An early Pleistocene Mg/Ca-δ18O record from the Gulf of Mexico: Evaluating ice sheet size and pacing in the 40-kyr world

    NASA Astrophysics Data System (ADS)

    Shakun, J. D.; Raymo, M. E.; Lea, D. W.; Klinkhammer, G. P.

    2011-12-01

    Two decades ago, Joyce (1993) presented a planktonic δ18O record from ODP site 625 in the Gulf of Mexico and interpreted numerous light isotope excursions beginning at 2.5 Ma as reflecting Laurentide Ice Sheet meltwater pulses down the Mississippi River. This finding implied an extensive early Pleistocene (EP) ice sheet, seemingly at odds with the smaller global ice volume inferred from benthic δ18O at this time. The till record on land confirms that ice extended into the central U.S at least twice during the EP. We are developing a high-resolution paired Mg/Ca-δ18O record from site 625 to reconstruct sea surface temperatures and salinity over the EP and evaluate Joyce's meltwater interpretation. Initial results of our temperature-corrected δ18O record confirm his inference of large meltwater spikes at the onset of the Quaternary. Our approach could weigh in on several hypotheses concerning the size and pacing of Quaternary ice sheets. The Integrated Insolation hypothesis explains the puzzling lack of precession variability in marine δ18O during the 40-kyr world by arguing that ice sheets are sensitive to insolation integrated over the summer, which is largely controlled by obliquity. The Antiphase Hypothesis, on the other hand, suggests that EP precession variability was antiphased between northern and southern ice sheets, canceling out and leaving the in-phase obliquity component to dominate the marine δ18O record. This view implies that marine δ18O may underestimate Northern Hemisphere ice volume during the EP. The Regolith Hypothesis takes the small ice volume implied by marine δ18O at face value and, together with the large ice area suggested from Joyce's meltwater spikes and the mid-continent till record, argues that EP ice sheets had a flat-like-a-pancake geometry, which it attributes to fast ice flow over a deformable bed. Erosion of this bed in the mid-Pleistocene may then have led to larger, more sluggish ice sheets and the transition from 40 to

  9. Erosional History of the Himalayan Range Since the Last 180 kyr: Clay Mineralogical and Geochemical Investigations From the Bay of Bengal

    NASA Astrophysics Data System (ADS)

    Joussain, R.; Liu, Z.; Christophe, C.

    2014-12-01

    Himalayan range and Indo-Gangetic plain are drained by one of the world's largest river system of the world: the Ganges-Brahmaputra Rivers. This river system is the first in term of sediment transport and thus constitute an interesting region to establish a relation between erosion and climate. Sediments from the Bay of Bengal indicate that the strength of summer monsoon rainfall is an important factor driving weathering and erosion of the Himalaya. Results of a high-resolution clay mineralogy study combined with major elements geochemistry and oxygen isotopes stratigraphy are reported for a deep-sea piston core collected 300 km off the Ganges-Brahmaputra Rivers estuary in the northern part of the Bay in Bengal. In this study, the top part (first 13.5 m) of Core MD12-3412 covers the last climatic cycle (last 180 kyr). This core reveals a monsoon-controlled chemical weathering and physical erosion history during the last 180 kyr in the Himalayan range and the Ganges-Brahmaputra Basin. Data show the contribution of Ganges-Brahmaputra Rivers, which drain the Himalayan range and the Indo-Gangetic plain. Clay mineral assemblages are dominated by illite and smectite, with lesser abundance of chlorite and kaolinite. Smectite/(illite + chlorite) and illite chemistry index are used as indices of chemical weathering rates. Thirty five new samples for ɛNd(0) analyses were selected (in turbidite and hemipelagic layers) during glacial and interglacial periods. Himalayan range is characterized by ɛNd(0) ≈ -16, whereas ɛNd(0) values along the Arakan coast are around -8. In this work we compared with ɛNd(0) values obtained previously on the free-carbonated fraction on Core MD77-180 which show that sediment from the eastern Bay of Bengal results from the mixing of material from the Himalayan and Indo-Burman ranges (with an average value of ɛNd(0) ≈ -13 for the last climatic cycle). These analyses give us information about the material coming from Ganges-Brahmaputra Rivers

  10. Oxygen isotopes of Pacific seawater, 0-40 kyr, based on d18O and Mg/Ca of benthic and planktic foraminifera: relation to deglacial sealevel rise.

    NASA Astrophysics Data System (ADS)

    Mix, A. C.; Klinkhammer, G. P.

    2007-12-01

    Combining high resolution (~200 year sample resolution) oxygen and carbon isotope measurements and Mg/Ca analyses in planktic (G. ruber and N. dutertrei) and benthic foraminifera (Uvigerina sp.; use of infaunal benthics minimizes likely CO3= effects) from the mid-depth eastern Pacific provides for detailed estimates of changing d18O of seawater over the past 40 kyr at ODP Site 1242. The key to this analysis is improved precision of the Mg/Ca analyses based on a new generation of high precision flow-through time-resolved analysis (FT-TRA) (e.g., average internal precision for Mg/Ca is now +/-0.005 benthic, and +/-0.015 planktic). This method is relatively insensitive to mild dissolution of heterogeneous shells, and thus requires no corrections for preservation. The change in seawater d18O (at 1364 m depth) between the Holocene and Last Glacial Maximum is 1.2 +/- 0.04 permil when averaged over the stages, consistent with pore-water diffusion estimates; however, millennial scale events (which the pore-water data cannot detect) bring the total range up to about 1.6 permil. Are such short-term events related to sealevel change, or do they reflect changing watermasses? Measurements of d13C data (C. wuellerstorfi), sensitive to modern subsurface watermass gradients, are not highly correlated to short- term changes in d18Oseawater suggesting a transient response to ice volume changes. Glacial weakening of AAIW (salty, high d18O, high d13C) relative to north Pacific watermasses (fresher, lower d18O, low d13C) suggest that the benthic d18Oseawater may underestimate total local changes related to ice volume (with a caveat regarding proper scaling of benthic Mg/Ca to temperature). Benthic d18Oseawater falls through the deglaciation in steps, starting at 18 cal ka, with maximum rates of change at 14-15 ka, and with secondary rapid steps at 16-17 ka and 10-11 kar. Planktic foraminifera yield smaller glacial-interglacial d18Oseawater values, with Holocene-to-LGM stage- average

  11. Mechanisms Directing the Nuclear Localization of the CtBP Family Proteins

    PubMed Central

    Verger, Alexis; Quinlan, Kate G. R.; Crofts, Linda A.; Spanò, Stefania; Corda, Daniela; Kable, Eleanor P. W.; Braet, Filip; Crossley, Merlin

    2006-01-01

    The C-terminal binding protein (CtBP) family includes four proteins (CtBP1 [CtBP1-L], CtBP3/BARS [CtBP1-S], CtBP2, and RIBEYE) which are implicated both in transcriptional repression and in intracellular trafficking. However, the precise mechanisms by which different CtBP proteins are targeted to different subcellular regions remains unknown. Here, we report that the nuclear import of the various CtBP proteins and splice isoforms is differentially regulated. We show that CtBP2 contains a unique nuclear localization signal (NLS) located within its N-terminal region, which contributes to its nuclear accumulation. Using heterokaryon assays, we show that CtBP2 is capable of shuttling between the nucleus and cytoplasm of the cell. Moreover, CtBP2 can heterodimerize with CtBP1-L and CtBP1-S and direct them to the nucleus. This effect strongly depends on the CtBP2 NLS. PXDLS motif-containing transcription factors, such as BKLF, that bind CtBP proteins can also direct them to the nucleus. We also report the identification of a splice isoform of CtBP2, CtBP2-S, that lacks the N-terminal NLS and localizes to the cytoplasm. Finally, we show that mutation of the CtBP NADH binding site impairs the ability of the proteins to dimerize and to associate with BKLF. This reduces the nuclear accumulation of CtBP1. Our results suggest a model in which the nuclear localization of CtBP proteins is influenced by the CtBP2 NLS, by binding to PXDLS motif partner proteins, and through the effect of NADH on CtBP dimerization. PMID:16782877

  12. Marine04 Marine radiocarbon age calibration, 26 ? 0 ka BP

    SciTech Connect

    Hughen, K; Baille, M; Bard, E; Beck, J; Bertrand, C; Blackwell, P; Buck, C; Burr, G; Cutler, K; Damon, P; Edwards, R; Fairbanks, R; Friedrich, M; Guilderson, T; Kromer, B; McCormac, F; Manning, S; Bronk-Ramsey, C; Reimer, P; Reimer, R; Remmele, S; Southon, J; Stuiver, M; Talamo, S; Taylor, F; der Plicht, J v; Weyhenmeyer, C

    2004-11-01

    New radiocarbon calibration curves, IntCal04 and Marine04, have been constructed and internationally ratified to replace the terrestrial and marine components of IntCal98. The new calibration datasets extend an additional 2000 years, from 0-26 ka cal BP (Before Present, 0 cal BP = AD 1950), and provide much higher resolution, greater precision and more detailed structure than IntCal98. For the Marine04 curve, dendrochronologically dated tree-ring samples, converted with a box-diffusion model to marine mixed-layer ages, cover the period from 0-10.5 ka cal BP. Beyond 10.5 ka cal BP, high-resolution marine data become available from foraminifera in varved sediments and U/Th-dated corals. The marine records are corrected with site-specific {sup 14}C reservoir age information to provide a single global marine mixed-layer calibration from 10.5-26.0 ka cal BP. A substantial enhancement relative to IntCal98 is the introduction of a random walk model, which takes into account the uncertainty in both the calendar age and the radiocarbon age to calculate the underlying calibration curve. The marine datasets and calibration curve for marine samples from the surface mixed layer (Marine04) are discussed here. The tree-ring datasets, sources of uncertainty, and regional offsets are presented in detail in a companion paper by Reimer et al.

  13. Linkages between rapid climate variability and deep-sea benthic foraminifera in the deep Subantarctic South Atlantic during the last 95 kyr

    NASA Astrophysics Data System (ADS)

    Diz, Paula; Barker, Stephen

    2015-06-01

    We present a high-resolution record of benthic foraminifera fauna from a sediment core retrieved from the South Cape Basin (Subantarctic South Atlantic) spanning the last glacial cycle (95 kyr). Information provided by benthic foraminiferal assemblages together with paleoclimate proxies from the same core allow us to interpret changes in the style of primary production (episodic versus sustained) in relation to abrupt climate oscillations. Our results indicate that fluctuations in the abundance of the phytodetritus-related species, Epistominella exigua, are concomitant with millennial-scale high-latitude climate perturbations. Episodic phytoplankton blooms increased during a negative mode of the bipolar seesaw, irrespective of the magnitude of the perturbation (i.e., Heinrich stadial versus non-Heinrich stadial events). We provide a hypothesis linking the frequency and intensity of these events to atmospheric perturbations, interhemispheric climate variability, and millennial-scale changes in atmospheric CO2. A notable exception to the overall pattern is the generally high abundance of E. exigua across the globally synchronous onset of glacial marine oxygen isotope stage (MIS) 4, a period generally characterized by increased dustiness and low-quality organic carbon as inferred by the percentage of the nonphytodetritus species. This highlights the special characteristics governing the onset of MIS 4 in the Subantarctic.

  14. A 100 Myr history of the carbon cycle based on the 400 kyr cycle in marine δ13C benthic records

    NASA Astrophysics Data System (ADS)

    Paillard, Didier; Donnadieu, Yannick

    2014-12-01

    Documenting the past coevolution of Earth temperatures and of the carbon cycle is of paramount importance for our understanding of climate dynamics. Atmospheric CO2 is well constrained over the last million years through direct measurements in air bubbles from Antarctic ice cores. For older times, many different and sometimes conflicting proxies have been suggested. Here we provide a new methodology to constrain the carbon cycle in the past, based on marine benthic δ13C records. Marine δ13C data are recording a persistent 400 kyr cycle, with an amplitude primarily linked to the total amount of carbon in the ocean, or dissolved inorganic carbon (DIC). By extracting this amplitude from published records, we obtain a new strong constraint on the 100 Myr history of Earth's carbon cycle. The obtained Cenozoic evolution of DIC is in surprisingly in a good agreement with existing reconstructions of pCO2, suggesting that pCO2 is mostly driven by DIC changes over this period. In contrast, we find no strong decreasing trend in DIC between the Cretaceous and the Cenozoic, suggesting that Cretaceous atmospheric pCO2 levels were limited, and high temperatures at this time should be explained by other mechanisms. Alternatively, high Cretaceous atmospheric pCO2 could occur as a consequence of changes in oceanic chemistry but not carbon content.

  15. Preliminary Geological Findings on the BP-1 Simulant

    NASA Technical Reports Server (NTRS)

    Rickman, D. L.

    2010-01-01

    The following is a summation of information and discussion between Doug Stoeser of the USGS and Doug Rickman of NASA in February and March, 2010 pertaining to the BP-1 simulant. The analytical results and the bulk of the text are from communications from Dr. Stoeser. The BP-1 simulant is made from Black Point Basalt Flow, San Francisco Volcanic Field, northern Arizona. There is an aggregate (road metal) quarry on the northern margin of the flow towards the west end that was used as a Desert Research and Technology Studies (Desert RATS) analog test site. Silty material from this site was also used in laboratory tests and found to have geotechnical properties similar to the LHT-2M and Chenobi regolith simulants and is being proposed as a possible simulant for geotechnical use. It currently has the designation of BP-1 (Black Point 1). Figure

  16. Endothelin-1 and the kidney – beyond BP

    PubMed Central

    Dhaun, Neeraj; Webb, David J; Kluth, David C

    2012-01-01

    Since its discovery over 20 years ago endothelin-1 (ET-1) has been implicated in a number of physiological and pathophysiological processes. Its role in the development and progression of chronic kidney disease (CKD) is well established and is an area of ongoing intense research. There are now available a number of ET receptor antagonists many of which have been used in trials with CKD patients and shown to reduce BP and proteinuria. However, ET-1 has a number of BP-independent effects. Importantly, and in relation to the kidney, ET-1 has clear roles to play in cell proliferation, podocyte dysfunction, inflammation and fibrosis, and arguably, these actions of ET-1 may be more significant in the progression of CKD than its prohypertensive actions. This review will focus on the potential role of ET-1 in renal disease with an emphasis on its BP-independent actions. PMID:22670597

  17. Preliminary Geological Findings on the BP-1 Simulant

    NASA Technical Reports Server (NTRS)

    Stoeser, D. B.; Rickman, D. L.; Wilson, S.

    2010-01-01

    A waste material from an aggregate producing quarry has been used to make an inexpensive lunar simulant called BP-1. The feedstock is the Black Point lava flow in northern Arizona. Although this is part of the San Francisco volcanic field, which is also the source of the JSC-1 series feedstock, BP-1 and JSC-1 are distinct. Chemically, the Black Point flow is an amygdaloidal nepheline-bearing basalt. The amygdules are filled with secondary minerals containing opaline silica, calcium carbonate, and ferric iron minerals. X-ray diffraction (XRD) detected approximately 3% quartz, which is in line with tests done by the Kennedy Space Center Industrial Hygiene Office. Users of this material should use appropriate protective equipment. XRD also showed the presence of significant halite and some bassanite. Both are interpreted to be evaporative residues due to recycling of wash water at the quarry. The size distribution of BP-1 may be superior to some other simulants for some applications.

  18. 200-BP-5 operable unit treatability test report

    SciTech Connect

    1996-04-01

    The 200-BP-5 Operable Unit was established in response to recommendations presented in the 200 East Groundwater Aggregate Area Management Study Report (AAMSR) (DOE-RL 1993a). Recognizing different approaches to remediation, the groundwater AAMSR recommended separating groundwater from source and vadose zone operable units and subdividing 200 East Area groundwater into two operable units. The division between the 200-BP-5 and 200-PO-1 Operable Units was based principally on source operable unit boundaries and distribution of groundwater plumes derived from either B Plant or Plutonium/Uranium Extraction (PUREX) Plant liquid waste disposal sites.

  19. BP chief scientist nominated for senior energy role

    NASA Astrophysics Data System (ADS)

    Gwynne, Peter

    2014-01-01

    The Obama administration has nominated BP's chief scientist Ellen Williams to be director of the Advanced Research Projects Agency-Energy (ARPA-E), which was created in 2007 to fund "high-risk, high-reward" research into novel energy technologies that are too early for investment by the private sector.

  20. Volcanic evolution of an active magmatic rift segment on a 100 Kyr timescale: exposure dating of lavas from the Manda Hararo/Dabbahu segment of the Afar Rift

    NASA Astrophysics Data System (ADS)

    Medynski, S.; Williams, A.; Pik, R.; Burnard, P.; Vye, C.; France, L.; Ayalew, D.; Yirgu, G.

    2012-12-01

    In the Afar depression (Ethiopia), extension is already organised along rift segments which morphologically resemble oceanic rifts. Segmentation here results from interactions between dyke injection and volcanism, as observed during the well documented 2005 event on the Dabbahu rift segment. During this tectono-volcanic crisis, a megadyke was injected, followed by 12 subsequent dike intrusions, sometimes associated with fissure flow eruptions. Despite the accurate surveying of the magmatic and tectonic interplay during this event via remote sensing techniques, there is a lack of data on timescales of 1 to 100 kyr, the period over which the main morphology of a rift is acquired. The Dabbahu rift segment represents an ideal natural laboratory to study the evolution of rift morphology as a response to volcanic and tectonic influences. It is possible to constrain the timing of fault growth relative to the infilling of the rift axial depression by lava flows, and to assess the influence of the different magma bodies involved in lava production along the rift-segment. We use cosmogenic nuclides (3He) to determine the ages of young (<100 kyr) lava flows and to date the initiation and movement of fault scarps which cut the lavas. Combined with major & trace element compositions, field mapping and digital cartography (Landsat, ASTER and SPOT imagery), the rift geomorphology can be linked to the magmatic and tectonic history defined by surface exposure dating. The results show that over the last 100 ka the Northern part of the Dabbahu segment was supplied by two different magma reservoirs which can be identified based on their distinctive chemistries. The main reservoir is located beneath Dabbahu volcano, and has been supplied with magma for at least 72 ka. This magmatic centre supplies magma to most of the northern third of the rift segment. The second reservoir is located further south, on the axis, close to the current mid-segment magma chamber, which was responsible for

  1. Sediment transport process and East Asian monsoon evolution during the last 410 kyr in the northern South China Sea: a multi-proxy approach

    NASA Astrophysics Data System (ADS)

    Chen, Quan; Liu, Zhifei; Kissel, Catherine

    2015-04-01

    Terrigenous detrital materials buried at sea is a book documenting their whole life, including the continental environment where they originated from and the transport process they experienced. In order to reconstruct the East Asian monsoon evolution in late Quaternary, we need to read this book correctly. The key problem is to well understand the proxies and pick the right ones, because most of them are affected by several factors. In this study, clay and magnetic mineralogical measurements and geochemical XRF analyses were conducted on Core MD12-3432 taken from the northern South China Sea at 2125 m water depth during the CIRCEA cruise organized within Franco-Chinese LIA-MONOCL framework on board the R.V. Marion Dufresne. The age model is derived from both carbonate and magnetic stratigraphy. The clearly identified Laschamp and Iceland Basin geomagnetic excursions are used as tie points. Coupled earth magnetic field paleointensity and carbonate content record calibrated from XRF core scanned calcium intensity, we established a robust age model, indicating that Core MD12-3432 covers the last 410 kyr with an average sedimentation rate of 12.4 cm/kyr. The calibrated XRF-scan data provide high-resolution Ti/Ca, Al/Si and K/Al ratios. Ti/Ca and Al/Si ratios vary in phase, indicating strong clastic flux and short transport distances during glacials. Variations in K/Al ratio show an independent pattern, suggesting that temperature-driven chemical weathering is not the main control factor. Special attention needs therefore to be paid to the transport process. For that purpose, anisotropy of magnetic susceptibility was measured on discrete samples at 50 cm intervals. Orientations of the principal anisotropy axes could be reconstructed, using the NRM declination to orient the core in the horizontal plane. The maximum axis is relatively well oriented in the stratigraphic plane of the sedimentary magnetic fabric. A 90° shift is observed at the MIS 5-6 boundary, suggesting a

  2. 46 CFR 2.45-25 - Application for approval.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... been revoked, under 46 CFR part 8, subpart B; (2) Submits in writing and in the English language to the... approval must be made in writing and in the English language to U.S. Coast Guard, Commandant (CG-ENG... application submitted in accordance with 46 CFR part 8, subpart B satisfies the application requirements...

  3. 46 CFR 2.45-25 - Application for approval.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... been revoked, under 46 CFR part 8, subpart B; (2) Submits in writing and in the English language to the... approval must be made in writing and in the English language to Commandant (CG-ENG), Attn: Office of Design... application submitted in accordance with 46 CFR part 8, subpart B satisfies the application requirements...

  4. 46 CFR 2.45-25 - Application for approval.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... been revoked, under 46 CFR part 8, subpart B; (2) Submits in writing and in the English language to the... approval must be made in writing and in the English language to Commandant (CG-ENG), Attn: Office of Design... application submitted in accordance with 46 CFR part 8, subpart B satisfies the application requirements...

  5. Chronological constraints on Cordilleran Ice Sheet glaciomarine sedimentation from core MD02-2496 off Vancouver Island (western Canada)

    NASA Astrophysics Data System (ADS)

    Cosma, T. N.; Hendy, I. L.; Chang, A. S.

    2008-05-01

    Chronology based on 46 radiocarbon dates has been generated for MD02-2496, western Vancouver Island, Canada. Subsequent correlation between glaciomarine sedimentary sequences within the core and the terrestrial stratigraphy of the Cordilleran Ice Sheet for the last 50 ka provide new insight into Cordilleran Ice Sheet processes. Glaciomarine sedimentation associated with the most recent advance (Fraser Glaciation) of the Cordilleran Ice Sheet began at 30.5 cal kyr BP (˜25 14C kyr BP). Extremely high sedimentation rates indicate the ice sheet became proximal to the site at ˜19.5 cal kyr BP (16 14C kyr BP). Deposition of ice rafted detritus (IRD) began at ˜17 cal kyr BP (14 14C kyr BP), and abruptly terminated at ˜16.2 cal kyr BP (13.5 14C kyr BP) indicating rapid regional ice sheet retreat. A minor IRD event followed at ˜14.7 cal kyr BP (12.5 14C kyr BP). Glaciomarine sediment deposition abruptly ended at 10.2 cal kyr BP (˜8.8 14C kyr BP) with the resumption of biogenic sedimentation. The Olympia Interstade is represented by an interval of hemipelagic sedimentation between ˜43 and 31.5 ka. Prior to ˜45 ka sediment deposition is controlled by glaciomarine processes with evidence for a significant IRD event at ˜47 cal kyr BP (>41±1.06 14C kyr BP).

  6. Varying responses to Indian monsoons during the past 220 kyr recorded in deep-sea sediments in inner and outer regions of the Gulf of Aden

    NASA Astrophysics Data System (ADS)

    Isaji, Yuta; Kawahata, Hodaka; Ohkouchi, Naohiko; Ogawa, Nanako O.; Murayama, Masafumi; Inoue, Kazuki; Tamaki, Kensaku

    2015-11-01

    Although the climate in the Arabian Sea is controlled primarily by the southwest monsoon, the southwest monsoon has little influence in the Gulf of Aden. To examine the different responses to monsoons between the Gulf of Aden and areas outside the gulf, a comprehensive data set of bulk organic and inorganic geochemistry, sea surface temperature, and δ15N of pheopigments was obtained from deep-sea sediment cores recovered from inner and outer regions of the gulf. The results indicated that during the past 220 kyr, the influence of the southwest monsoon was stronger in the outer region of the gulf than in the inner region, which implies that the southwest monsoon trajectory has not changed substantially during that time period. Furthermore, influxes of O2-depleted water from the Southern Ocean and the lateral advection of upwelled seawater also had limited influence in the inner region. In contrast, concentrations of lithogenic materials transported by the southwest monsoon were similar in the two regions. δ15N of pheopigments indicated that during the last glacial maximum, the southwest monsoon was weaker and the northeast monsoon was stronger than at present. A stronger southwest monsoon during interglacials enhanced primary productivity and may have caused anoxic conditions to develop in the Arabian Sea, as indicated by redox proxies in the outer region. Anoxic conditions also formed during MIS 3, but no increase in the primary productivity is indicated; therefore, another mechanism, such as an influx of O2-depleted water from the Southern Ocean, may have been the cause.

  7. Roosevelt Island Climate Evolution Project (RICE): A 65 Kyr ice core record of black carbon aerosol deposition to the Ross Ice Shelf, West Antarctica.

    NASA Astrophysics Data System (ADS)

    Edwards, Ross; Bertler, Nancy; Tuohy, Andrea; Neff, Peter; Proemse, Bernedette; Feiteng, Wang; Goodwin, Ian; Hogan, Chad

    2015-04-01

    Emitted by fires, black carbon aerosols (rBC) perturb the atmosphere's physical and chemical properties and are climatically active. Sedimentary charcoal and other paleo-fire records suggest that rBC emissions have varied significantly in the past due to human activity and climate variability. However, few paleo rBC records exist to constrain reconstructions of the past rBC atmospheric distribution and its climate interaction. As part of the international Roosevelt Island Climate Evolution (RICE) project, we have developed an Antarctic rBC ice core record spanning the past ~65 Kyr. The RICE deep ice core was drilled from the Roosevelt Island ice dome in West Antarctica from 2011 to 2013. The high depth resolution (~ 1 cm) record was developed using a single particle intracavity laser-induced incandescence soot photometer (SP2) coupled to an ice core melter system. The rBC record displays sub-annual variability consistent with both austral dry-season and summer biomass burning. The record exhibits significant decadal to millennial-scale variability consistent with known changes in climate. Glacial rBC concentrations were much lower than Holocene concentrations with the exception of several periods of abrupt increases in rBC. The transition from glacial to interglacial rBC concentrations occurred over a much longer time relative to other ice core climate proxies such as water isotopes and suggests . The protracted increase in rBC during the transition may reflected Southern hemisphere ecosystem / fire regime changes in response to hydroclimate and human activity.

  8. Phytoliths Used to Investigate the Effects of the Indonesian Mount Toba Super-Eruption (~75 kyr) in East Africa: A Subdecadal Record from Lake Malawi

    NASA Astrophysics Data System (ADS)

    Yost, C. L.; Cohen, A. S.

    2014-12-01

    The recent discovery of cryptotephra visually and chemically matched to the Youngest Toba Tuff (YTT, 75.0 ± 0.9 kyr) in Lake Malawi drill core sediments has spurred renewed interest in this period of time in East Africa. The YTT is the most recent and largest of the four Mount Toba eruptions, and is the only super-eruption to have taken place during the Quaternary. The timing of the YTT approximately coincides with a hypothesized human genetic bottleneck. Several climate models have proposed an episode of global cooling following the YTT; however, the magnitude and duration of the cooling is much debated, ranging from just a few degrees of cooling to a state of volcanic winter. Cored sediments from Lake Malawi provide an excellent record of local variability in the lake's watershed that may be linked to specific climatic events. To investigate the possible effects of the YTT in East Africa, we continuously sampled Lake Malawi drill core 2A-10H-2 at 2-4 mm (~6 yr) intervals above and below the first occurrence of the YTT. Poaceae phytoliths were grouped into plant functional types (C3, C4, xerophytic, mesophytic, arboreal, etc.), revealing mostly subtle changes in terrestrial vegetation over the ~400 yr time period examined. Abrupt increases in concentration values for phytoliths derived from riverine Podostemaceae plants appear to signal increased discharge from rivers draining the surrounding uplands. Perhaps most significant is the increasing trend in burned phytoliths and decreasing trend in tree phytoliths post-YTT. Although there appears to be a very weak cooling signal synchronous with the YTT, the most abrupt terrestrial vegetation changes appear to be better correlated with the deposition of a slightly older cryptotephra horizon derived from the local Rungwe Volcanic Province. A potential complication with this record is the existence of a turbidite pre-YTT that encompasses the Rungwe horizon.

  9. Short-term fluctuations in vegetation and phytoplankton during the Middle Eocene greenhouse climate: a 640-kyr record from the Messel oil shale (Germany)

    NASA Astrophysics Data System (ADS)

    Lenz, Olaf K.; Wilde, Volker; Riegel, Walter

    2011-11-01

    The Palaeogene was the most recent greenhouse period on Earth. Especially for the Late Palaeocene and Early Eocene, several superimposed short-term hyperthermal events have been described, including extremes such as the Palaeocene-Eocene Thermal Maximum. Major faunal and floral turnovers in the marine and terrestrial realms were recorded in association with these events. High-resolution palynological analysis of the early Middle Eocene maar lake sediments at Messel, near Darmstadt, Germany, provides an insight into the dynamics of a climax vegetation during the Middle Eocene greenhouse climate in a time span without significant climatic excursions. Numerical techniques like detrended correspondence analysis and wavelet analysis have been applied to recognize cyclic fluctuations and long-term trends in the vegetation through a time interval of approximately 640 kyr. Based on the numerical zoning of the pollen diagram, three phases in the development of the vegetation may be distinguished. Throughout these phases, the climax vegetation did not change substantially in qualitative composition, but a trend towards noticeably less humid conditions probably in combination with a drop of the water level in the lake may be recognized. A shift in algal population from the freshwater dinoflagellate cyst Messelodinium thielepfeifferae to a dominance of Botryococcus in the uppermost part of the core is interpreted as a response to changes in acidity and nutrient availability within the lake. Time series analyses of pollen assemblages show that variations in the Milankovitch range of eccentricity, obliquity and precession can be distinguished. In addition, fluctuations in the sub-Milankovitch range are indicated. This demonstrates that floral changes during steady depositional conditions in the Middle Eocene of Messel were controlled by orbital forcing.

  10. A ~600 kyr duration Early Pleistocene record from the West Turkana (Kenya) HSPDP drill site: elemental XRF variability to reconstruct climate change in Turkana Boy's backyard

    NASA Astrophysics Data System (ADS)

    Stockhecke, M.; Beck, C. C.; Brown, E. T.; Cohen, A.; Deino, A. L.; Feibel, C. S.; Sier, M.

    2015-12-01

    . In addition, the XRF record of the changing hydroclimate of the West Turkana Basin from 1.3 to 1.9 kyrs will be explored in relation to regional reconstructions and marine stratigraphies.

  11. Decade to centennial resolution hydrogen isotopic record of climate change from southern New England for the past 16 kyr: proxy validation and multi-proxy comparisons

    NASA Astrophysics Data System (ADS)

    Huang, Y.; Gao, L.; Hou, J.; Shuman, B. N.; Oswald, W.; Foster, D.

    2009-12-01

    Open system lakes in New England offer excellent archives of precipitation isotopic ratios that yield quantitative paleoclimate information. We have demonstrated previously from a lake sediment transect that hydrogen isotopic ratios of a middle-chain length fatty acid, behenic acid (BA), faithfully record precipitation isotopic ratios. We hypothesized that mid-chain n-alkyl lipids in these small lakes were primarily derived from aquatic plants that record lake water isotopic ratios. To test this hypothesis, we conducted systematic and extensive sampling of both terrestrial and aquatic plants over the past two years at two typical kettle hole lakes, Blood Pond and Rocky Pond, MA, and used a linear algebra approach to delineate percentage inputs of aquatic and terrestrial plant contributions to mid-chain n-alkyl lipids. Our results demonstrate that >92 % of the mid-chain n-alkyl lipids is derived from submerged and floating aquatic macrophytes. Our new data provide a solid basis for the application of behenic hydrogen isotopic ratios as a paleoclimate proxy from small lakes. We will present a decadal to centennial scale 16 kyr record of BA hydrogen isotopic ratios from Blood Pond, and will discuss the results in light of published pollen and lake level data. Overall, our hydrogen isotopic record is fully consistent with regional climate scenarios, including the distinctive warming at B-A events, abrupt cooling at YD event, and transition from glacial to Holcoene climate conditions. However, our high-solution isotopic data provides important new insights concerning abrupt regional climate variability. We demonstrate that the New England climate is exceptionally senstive to AMOC changes and solar forcing and that many of the abrupt climate fluctuations exert major impacts on terrestrial ecosystems, hydrology and lake levels.

  12. Planktic foraminiferal responses to orbital scale oceanographic changes off the western Iberian margin over the last 900 kyr: Results from IODP site U1391

    NASA Astrophysics Data System (ADS)

    Singh, A. D.; Verma, K.; Jaiswal, S.; Alonso-Garcia, M.; Li, B.; Abrantes, F.

    2015-12-01

    This paper presents planktic foraminiferal assemblage records of the last 900 kyr from the SW Iberian margin (IODP Site U1391). The faunal records show the history of surface oceanographic changes on glacial/interglacial scales before and after the Mid-Brunhes Event (MBE), a period when a major shift in the climate pattern was recorded in other regions. Temporal variations in relative abundances of characteristic species/groups are used to infer changes in the latitudinal position of the polar/Arctic water (% Neogloboquadrina pachyderma sinistral and Turborotalita quinqueloba), influence of the transitional subpolar water mass (% N. pachyderma dextral), and subtropical water (% tropical/subtropical species/group). Past changes in the upwelling intensity and productivity pattern associated with seasonal trade wind strength are inferred from the abundance variations of Globigerina bulloides and G. bulloides + Globigerinita glutinata, respectively. Faunal data reveal the influence of cold water masses (polar/subpolar) at the examined site was more pronounced during glacial stages except for marine isotope stage (MIS) 14 and 16. The magnitude of the polar/subpolar water mass invading the study area was at maximum before the MBE during MIS 18, 20 and 22, resulting in a situation like the present day Arctic Front. Interglacial periods prior to the MBE were also relatively colder than those of the post-MBE. Our faunal based inferences are in agreement with the ice-rafted debris (IRD) concentration and N. pachyderma sinistral records of the subpolar North Atlantic sites. Based on faunal proxies, we recorded major and rapid changes in upwelling intensity and related productivity during glacial Terminations. Both the upwelling intensity and productivity significantly increased after the MBE, particularly during the interglacials MIS 7, 9 and 11. Our productivity record parallels the EPICA CH4 record suggesting teleconnections between trade winds induced productivity and the

  13. South Asian monsoon history over the past 60 kyr recorded by radiogenic isotopes and clay mineral assemblages in the Andaman Sea

    NASA Astrophysics Data System (ADS)

    Ali, Sajid; Hathorne, Ed C.; Frank, Martin; Gebregiorgis, Daniel; Stattegger, Karl; Stumpf, Roland; Kutterolf, Steffen; Johnson, Joel E.; Giosan, Liviu

    2015-02-01

    The Late Quaternary variability of the South Asian (or Indian) monsoon has been linked with glacial-interglacial and millennial scale climatic changes but past rainfall intensity in the river catchments draining into the Andaman Sea remains poorly constrained. Here we use radiogenic Sr, Nd, and Pb isotope compositions of the detrital clay-size fraction and clay mineral assemblages obtained from sediment core NGHP Site 17 in the Andaman Sea to reconstruct the variability of the South Asian monsoon during the past 60 kyr. Over this time interval ɛNd values changed little, generally oscillating between -7.3 and -5.3 and the Pb isotope signatures are essentially invariable, which is in contrast to a record located further northeast in the Andaman Sea. This indicates that the source of the detrital clays did not change significantly during the last glacial and deglaciation suggesting the monsoon was spatially stable. The most likely source region is the Irrawaddy river catchment including the Indo-Burman Ranges with a possible minor contribution from the Andaman Islands. High smectite/(illite + chlorite) ratios (up to 14), as well as low 87Sr/86Sr ratios (0.711) for the Holocene period indicate enhanced chemical weathering and a stronger South Asian monsoon compared to marine oxygen isotope stages 2 and 3. Short, smectite-poor intervals exhibit markedly radiogenic Sr isotope compositions and document weakening of the South Asian monsoon, which may have been linked to short-term northern Atlantic climate variability on millennial time scales. This article was corrected on 18 MAR 2015. See the end of the full text for details.

  14. Rapid directional changes associated with a 6.5 kyr-long Blake geomagnetic excursion at the Blake-Bahama Outer Ridge

    NASA Astrophysics Data System (ADS)

    Bourne, Mark; Mac Niocaill, Conall; Thomas, Alex L.; Knudsen, Mads Faurschou; Henderson, Gideon M.

    2012-06-01

    Geomagnetic excursions are recognized as intrinsic features of the Earth's magnetic field. High-resolution records of field behaviour, captured in marine sedimentary cores, present an opportunity to determine the temporal and geometric character of the field during geomagnetic excursions and provide constraints on the mechanisms producing field variability. We present here the highest resolution record yet published of the Blake geomagnetic excursion (∼125 ka) measured in three cores from Ocean Drilling Program (ODP) Site 1062 on the Blake-Bahama Outer Ridge. The Blake excursion has a controversial structure and timing but these cores have a sufficiently high sedimentation rate (∼10 cm ka-1) to allow detailed reconstruction of the field behaviour at this site during the excursion. Palaeomagnetic measurements of the cores reveal rapid transitions (<500 yr) between the contemporary stable normal polarity and a completely reversed state of long duration which spans a stratigraphic interval of 0.7 m. We determine the duration of the reversed state during the Blake excursion using oxygen isotope stratigraphy, combined with 230Th excess measurements to assess variations in the sedimentation rates through the sections of interest. This provides an age and duration for the Blake excursion with greater accuracy and with constrained uncertainty. We date the directional excursion as falling between 129 and 122 ka with a duration for the deviation of 6.5±1.3 kyr. The long duration of this interval and the fully reversed field suggest the existence of a pseudo-stable, reversed dipole field component during the excursion and challenge the idea that excursions are always of short duration.

  15. Small Molecule, NSC95397, Inhibits the CtBP1-Protein Partner Interaction and CtBP1-Mediated Transcriptional Repression.

    PubMed

    Blevins, Melanie A; Kouznetsova, Jennifer; Krueger, Aaron B; King, Rebecca; Griner, Lesley Mathews; Hu, Xin; Southall, Noel; Marugan, Juan J; Zhang, Qinghong; Ferrer, Marc; Zhao, Rui

    2015-06-01

    Carboxyl-terminal binding protein (CtBP) is a transcriptional corepressor that suppresses multiple proapoptotic and epithelial genes. CtBP is overexpressed in many human cancers, and its overexpression increases stem cell-like features, epithelial-mesenchymal transition, and cancer cell survival. Knockdown of CtBP also increases apoptosis independent of p53 in cell culture. Therefore, targeting CtBP with small molecules that disrupt its interaction with transcription factor partners may be an effective cancer therapy. To elicit its corepressing effect, CtBP binds to a conserved peptide motif in each transcription factor partner. We developed an AlphaScreen high-throughput screening assay to monitor the interaction between CtBP and E1A (which mimics the interaction between CtBP and its transcriptional partners). We screened the LOPAC library of 1280 bioactive compounds and identified NSC95397, which inhibits the CtBP-E1A interaction (IC50 = 2.9 µM). The inhibitory activity of NSC95397 was confirmed using two secondary assays and a counterscreen. NSC95397 also behaved as a weak substrate of CtBP dehydrogenase activity and did not inhibit another dehydrogenase, lactase dehydrogenase. Finally, NSC95397 was able to disrupt CtBP-mediated transcriptional repression of a target gene. These studies present a new possibility for the development of a therapeutic agent targeting tumors through disrupting the CtBP transcriptional complex. PMID:25477201

  16. Evaluation of ELISA testing for BP180 and BP230 as a diagnostic modality for bullous pemphigoid: a clinical experience.

    PubMed

    Keller, Jesse J; Kittridge, Ashley L; Debanne, Sara M; Korman, Neil J

    2016-05-01

    Bullous pemphigoid (BP) is a common autoimmune blistering disorder of the elderly. Several diagnostic modalities are available, including clinical impression, histopathology, direct and indirect immunofluorescence, and enzyme-linked immunosorbent assay (ELISA) detection of pathogenic antibodies. In this study, we aim to examine the utility of the newest test, ELISA, in comparison to the constellation of other tests. We describe our clinical experience in which 170 patients diagnosed with bullous pemphigoid had multiple tests performed. BP180 alone showed a sensitivity of 54 % and specificity of 94 %. The positive predictive value (PPV) is 95 % while the negative predictive value (NPV) is 52 %. BP230 alone yielded a sensitivity of 48 % and specificity of 94 %. The PPV is 94 % and the NPV is 49 %. Using both tests in combination yielded a sensitivity of 66 % and specificity of 89 %. The PPV of at least one of two tests returning positive is 92 % while the NPV of dual negative tests is 58 %. Use of ELISAs for suspected cases of BP are an inadequate standalone test, and are only helpful in making the diagnosis should they return positive. However, they would appear to miss about one-third of cases. PMID:26895534

  17. Gate tunable WSe2-BP van der Waals heterojunction devices

    NASA Astrophysics Data System (ADS)

    Chen, Peng; Zhang, Ting Ting; Zhang, Jing; Xiang, Jianyong; Yu, Hua; Wu, Shuang; Lu, Xiaobo; Wang, Guole; Wen, Fusheng; Liu, Zhongyuan; Yang, Rong; Shi, Dongxia; Zhang, Guangyu

    2016-02-01

    Due to the weak screening effect, the concentration and type of charge carriers in 2D semiconductor heterostructures can be effectively tuned by electrostatic gating, enabling us to realize different types of heterojunctions in a single device. Such `type tunable' properties are useful for designing novel electrical or optoelectrical devices. Here, we demonstrate a `type tunable' heterojunction device construct with two pieces of ambipolar 2D semiconductors: WSe2 and black phosphorus (BP). This heterojunction could be tuned to either the p-p junction or n-n junction by gate modulation. The p-p junction shows a large current rectification ratio while the n-n junction shows a negligible current rectification ratio, indicating a large valence band offset and a small conduction band offset at the WSe2/BP interface. In the optoelectrical measurements, we found the amplitude and even the polarity of photocurrent could be modulated by electrostatic gating. Our study could further enhance the understanding of designing devices based on these `type tunable' van der Waals heterojunctions. Moreover, the properties of the WSe2/BP interface were also experimentally identified through the electrical and optoelectrical measurements in our study.Due to the weak screening effect, the concentration and type of charge carriers in 2D semiconductor heterostructures can be effectively tuned by electrostatic gating, enabling us to realize different types of heterojunctions in a single device. Such `type tunable' properties are useful for designing novel electrical or optoelectrical devices. Here, we demonstrate a `type tunable' heterojunction device construct with two pieces of ambipolar 2D semiconductors: WSe2 and black phosphorus (BP). This heterojunction could be tuned to either the p-p junction or n-n junction by gate modulation. The p-p junction shows a large current rectification ratio while the n-n junction shows a negligible current rectification ratio, indicating a large valence

  18. Calibration of the radiocarbon time scale at 37ka BP

    SciTech Connect

    Southon, J.R.; Deino, A.L.; Orsi, G.

    1995-12-01

    Results from radiocarbon and U-Th measurements on corals have provided a radiocarbon calibration beyond the range covered by tree ring series, but the uncertainties in the measurements beyond 20ka BP are very large. We have obtained new calibration data from radiocarbon dates on material associated with the catastrophic Campanian Ignimbrite eruption from the Phlegrean Fields near Naples. The eruption has been well dated by {sup 40}Ar/{sup 39}Ar to 37ka BP. Radiocarbon measurements were carried out on charcoal from a carbonized branch exposed within the ignimbrite tuff on the wall of an active quarry. The sample was split and analyzed at both the Naples and Lawrence Livermore AMS facilities. The offset between the Ar-Ar data and the radiocarbon results (recalculated using the true 5730-year half life for {sup 14}C) is consistent with predictions from paleomagnetic data and carbon cycle modeling.

  19. Spectropolarimetry of the classical T Tauri star BP Tauri

    NASA Astrophysics Data System (ADS)

    Chen, Wei; Johns-Krull, Christopher

    2012-05-01

    We implement a least-squares deconvolution (LSD) code to study magnetic fields on cool stars. We first apply our code to high resolution (R ~ 60,000) optical echelle spectra of several solar-like stars as tests of the code and to measure the mean longitudinal magnetic field on the surface of these stars. Null results or weak fields are detected on the solar-like stars as is expected, demonstrating the functionality of the LSD code. We then apply our LSD code to 6 nights of data on the Classical T Tauri Star BP Tau. A maximum field of 330 +/- 80 G is detected from the photospheric lines on BP Tau. Measurements of several emission lines (He I 5876 A˚, Ca II 8498 A˚ and 8542 A˚) show the presence of strong magnetic fields in the line formation regions, which are believed to be the base of the accretion footpoints.

  20. Variability of Balmer Profiles in Magnetic Ap/Bp Stars

    NASA Astrophysics Data System (ADS)

    Valyavin, G.; Lee, B.-C.; Shulyak, D.; Han, I.; Kochukhov, O.; Khang, D.-I.; Kim, K.-M.

    2007-06-01

    A set of high precision measurements of weak variations of hydrogen lines in spectra of seven magnetic Ap/Bp stars was carried out using the BOES echelle spectrograph of the Bohuynsan Optical Astronomy Observatory (South Korea). A weak (1-2 %) periodic variability of the Balmer line wings has been detected in the spectra of 2 program stars. Upper limits of possible variations are presented for the remaining 5 objects. We discuss the discovered variability in the framework of model atmospheres with magnetic force terms included. The periodic changes in the Balmer profiles are caused by perturbations in atmospheres of Ap/Bp stars due to their rotationally modulated non-force-free magnetic fields.

  1. Magnetospheric accretion on the T Tauri star BP Tauri

    NASA Astrophysics Data System (ADS)

    Donati, J.-F.; Jardine, M. M.; Gregory, S. G.; Petit, P.; Paletou, F.; Bouvier, J.; Dougados, C.; Ménard, F.; Collier Cameron, A.; Harries, T. J.; Hussain, G. A. J.; Unruh, Y.; Morin, J.; Marsden, S. C.; Manset, N.; Aurière, M.; Catala, C.; Alecian, E.

    2008-05-01

    From observations collected with the ESPaDOnS and NARVAL spectropolarimeters, we report the detection of Zeeman signatures on the classical T Tauri star (cTTS) BP Tau. Circular polarization signatures in photospheric lines and in narrow emission lines tracing magnetospheric accretion are monitored throughout most of the rotation cycle of BP Tau at two different epochs in 2006. We observe that rotational modulation dominates the temporal variations of both unpolarized and circularly polarized spectral proxies tracing the photosphere and the footpoints of accretion funnels. From the complete data sets at each epoch, we reconstruct the large-scale magnetic topology and the location of accretion spots at the surface of BP Tau using tomographic imaging. We find that the field of BP Tau involves a 1.2 kG dipole and 1.6 kG octupole, both slightly tilted with respect to the rotation axis. Accretion spots coincide with the two main magnetic poles at high latitudes and overlap with dark photospheric spots; they cover about 2 per cent of the stellar surface. The strong mainly axisymmetric poloidal field of BP Tau is very reminiscent of magnetic topologies of fully convective dwarfs. It suggests that magnetic fields of fully convective cTTSs such as BP Tau are likely not fossil remants, but rather result from vigorous dynamo action operating within the bulk of their convective zones. Preliminary modelling suggests that the magnetosphere of BP Tau extends to distances of at least 4R* to ensure that accretion spots are located at high latitudes, and is not blown open close to the surface by a putative stellar wind. It apparently succeeds in coupling to the accretion disc as far out as the corotation radius, and could possibly explain the slow rotation of BP Tau. Based on observations obtained at the Canada-France-Hawaii Telescope (CFHT) and at the Télescope Bernard Lyot (TBL). CFHT is operated by the National Research Council of Canada, the Institut National des Sciences de l

  2. Diffusion and Settling in Ap/Bp Stars

    SciTech Connect

    Turcotte, S

    2003-04-09

    Ap/Bp stars are magnetic chemically peculiar early A and late B type stars of the main sequence. They exhibit peculiar surface abundance anomalies that are thought to be the result of gravitational settling and radiative levitation. The physics of diffusion in these stars are reviewed briefly and some model predictions are discussed. While models reproduce some observations reasonably well, more work is needed before the behavior of diffusing elements in a complex magnetic field is fully understood.

  3. Gate tunable WSe2-BP van der Waals heterojunction devices.

    PubMed

    Chen, Peng; Zhang, Ting Ting; zhang, Jing; Xiang, Jianyong; Yu, Hua; Wu, Shuang; Lu, Xiaobo; Wang, Guole; Wen, Fusheng; Liu, Zhongyuan; Yang, Rong; Shi, Dongxia; Zhang, Guangyu

    2016-02-14

    Due to the weak screening effect, the concentration and type of charge carriers in 2D semiconductor heterostructures can be effectively tuned by electrostatic gating, enabling us to realize different types of heterojunctions in a single device. Such 'type tunable' properties are useful for designing novel electrical or optoelectrical devices. Here, we demonstrate a 'type tunable' heterojunction device construct with two pieces of ambipolar 2D semiconductors: WSe2 and black phosphorus (BP). This heterojunction could be tuned to either the p-p junction or n-n junction by gate modulation. The p-p junction shows a large current rectification ratio while the n-n junction shows a negligible current rectification ratio, indicating a large valence band offset and a small conduction band offset at the WSe2/BP interface. In the optoelectrical measurements, we found the amplitude and even the polarity of photocurrent could be modulated by electrostatic gating. Our study could further enhance the understanding of designing devices based on these 'type tunable' van der Waals heterojunctions. Moreover, the properties of the WSe2/BP interface were also experimentally identified through the electrical and optoelectrical measurements in our study. PMID:26810387

  4. The Arctic Ocean in response to millennial time scale paleoceanographic changes during the last glaciation, 70-25 years BP

    NASA Astrophysics Data System (ADS)

    Rasmussen, Tine L.; Thomsen, Erik; Nielsen, Tove

    2014-05-01

    The climate and paleoceanography of the last Glaciation were deeply affected by up to 25 abrupt temperature fluctuations generally known as Dansgaard-Oeschgwer events. The events have been documented worldwide, but the strongest and most abrupt fluctuations have been recorded from the Nord Atlantic and Nordic Seas indicating that their origin should be sought in this region. The events are generally linked to changes in deep water formation in the Nordic Seas and North Atlantic, disrupting the thermohaline circulation. Nevertheless, Dansgaard-Oeschger events have so far not been recorded north of the convection areas in the central Nordic Seas, and it is not known if they influenced the water exchange through the Fram Strait and thus affected the Arctic Ocean. We have studied gravity core JM05-31GC from the eastern Fram Strait at 80°N (785 m water depth) to reconstruct paleoceanographic changes in relation to the rapid climate changes of the Dansgaard-Oeschger (DO) events during marine isotope stages 4-2 (70-20 kyr BP). The core site is located within the path of the north flowing Atlantic Water at the very entrance to the Arctic Ocean. The results show millennial time scale changes in subsurface and bottom water temperatures, in the distribution of planktonic and benthic foraminifera in sediment grain size, in the content of ice rafted debris (IRD), and in the stable isotope values. In JM05-31GC, the interstadials are characterized by relatively high surface and low bottom water temperatures, low content of IRD and well-ventilated bottom water. Stadials are characterized by presence of icebergs, decreasing surface water and increasing bottom water temperatures. Ventilation decreased during Heinrich events and most stadials. The results show that the Dansgaard-Oeschger events strongly affected the water exchange between the Nordic Seas and the Arctic Ocean. The exchange of subsurface and intermediate water was similar to today during interstadials with strong flow

  5. High resolution multi-proxy records of the last 60 kyr in the Southeastern Carpathian basin: towards a palaeoclimatic reconstruction from NW to SE Europe

    NASA Astrophysics Data System (ADS)

    Marković, Slobodan; Stevens, Thomas; Hambach, Ulrich; Machalett, Björn; Bokhorst, Mark; Vandenberghe, Jef; Svirčev, Zorica; Zöller, Ludwig

    2010-05-01

    preliminary tephrochronological results indicate possibilities independent correlation with the other continental and marine records. At an interface between Mediterranean, Atlantic and Continental climate, the results presented in this study emphasise the importance of understanding the mechanisms behind last glacial climate change recorded in the Vojvodina loess-palaeosol sequences, as a contribution toward a more detailed spatial and temporal reconstruction of environmental dynamics across the European continent during the last 60 kyr.

  6. Co-located monogenetic eruptions ~200 kyr apart driven by tapping vertically separated mantle source regions, Chagwido, Jeju Island, Republic of Korea

    NASA Astrophysics Data System (ADS)

    Brenna, Marco; Németh, Károly; Cronin, Shane J.; Sohn, Young Kwan; Smith, Ian E. M.; Wijbrans, Jan

    2015-05-01

    -developed paleosol represents at least 200 kyr between the two co-located eruptions. The distinctive magma compositions show that each eruption tapped an independent region within the same underlying mantle source. These observations show that contrary to most assumptions of monogenetic volcanism, an already "tapped" source region may become fertile again through mantle convection/migration and eruptions can thus be expected from old vent sites in long-lived volcanic fields.

  7. The Emsian - Eifelian (Lower - Middle Devonian) boundary occurs in a 100-kyr eccentricity maximum: A potentially useful secondary marker for the GSSP section (Wetteldorf Richtschnitt, Germany).

    NASA Astrophysics Data System (ADS)

    De Vleeschouwer, D.; Makarona, C.; Linnemann, U.; Königshof, P.; Claeys, P. F.

    2015-12-01

    . We observe a mixed forcing of obliquity and eccentricity-modulated precession. Moreover, the Emsian - Eifelian boundary clearly occurs shortly after a 100-kyr eccentricity maximum. This cyclostratigraphic observation can be used as an additional mean in future long-distance correlations between Emsian - Eifelian boundary sections.

  8. Stability of rift axis magma reservoirs: Spatial and temporal evolution of magma supply in the Dabbahu rift segment (Afar, Ethiopia) over the past 30 kyr

    NASA Astrophysics Data System (ADS)

    Medynski, S.; Pik, R.; Burnard, P.; Vye-Brown, C.; France, L.; Schimmelpfennig, I.; Whaler, K.; Johnson, N.; Benedetti, L.; Ayelew, D.; Yirgu, G.

    2015-01-01

    Unravelling the volcanic history of the Dabbahu/Manda Hararo rift segment in the Afar depression (Ethiopia) using a combination of cosmogenic (36Cl and 3He) surface exposure dating of basaltic lava-flows, field observations, geological mapping and geochemistry, we show in this paper that magmatic activity in this rift segment alternates between two distinct magma chambers. Recent activity in the Dabbahu rift (notably the 2005-2010 dyking crises) has been fed by a seismically well-identified magma reservoir within the rift axis, and we show here that this magma body has been active over the last 30 kyr. However, in addition to this axial magma reservoir, we highlight in this paper the importance of a second, distinct magma reservoir, located 15 km west of the current axis, which has been the principal focus of magma accumulation from 15 ka to the subrecent. Magma supply to the axial reservoir substantially decreased between 20 ka and the present day, while the flank reservoir appears to have been regularly supplied with magma since 15 ka ago, resulting in less variably differentiated lavas. The trace element characteristics of magmas from both reservoirs were generated by variable degrees of partial melting of a single homogeneous mantle source, but their respective magmas evolved separately in distinct crustal plumbing systems. Magmatism in the Dabbahu/Manda Hararo rift segment is not focussed within the current axial depression but instead is spread out over at least 15 km on the western flank. This is consistent with magneto-telluric observations which show that two magma bodies are present below the segment, with the main accumulation of magma currently located below the western flank, precisely where the most voluminous recent (<15 ka) flank volcanism is observed at the surface. Applying these observations to slow spreading mid-ocean ridges indicates that magma bodies likely have a lifetime of a least 20 ka, and that the continuity of magmatic activity is

  9. Clay mineral contribution from various provenances in the northern South China Sea over the past 400 kyr: implications for the East Asian monsoon evolution

    NASA Astrophysics Data System (ADS)

    Chen, Quan; Liu, Zhifei; Xie, Xin; Kissel, Catherine

    2014-05-01

    Clay mineralogy of Core MD12-3432 taken at 2125 m water depth (CIRCEA cruise on board the R.V. Marion Dufresne, IPEV) in the northern South China Sea was investigated in order to understand the time series contribution of terrigenous sediments from various provenances. With calibration of a low-resolution analysis on carbonate concentration and major elements, we converted the XRF core scanned calcium data into a high-resolution carbonate content records. Through referring to the well-dated carbonate record of nearby Core MD05-2904, we established a reliable age model, indicating about 400 kyr ago at the bottom of Core MD12-3432. The clay mineral assemblage is dominated by smectite (23-59%) and illite (22-43%), with minor chlorite (13-27%) and kaolinite (4-13%). The time series variation of clay mineral assemblages indicates strong glacial-interglacial cyclicity. In general, the variation in smectite content is similar to that of carbonate concentration, with higher values during interglacials than during glacials, while illite and chlorite contents showing opposite patterns. The change in kaolinite content shows an independent pattern with high values during glacials, corresponding well with the illite crystallinity variation. The provenance analysis of these clay minerals suggests three end-member sources: all smectites derive from Luzon, all kaolinites originate from the Pearl River, and illite and chlorite are coming from both the Pearl River and Taiwan. Using the linear separation method of illite crystallinity, a time series of the clay mineral contribution from the three major provenances to the northern South China Sea was reconstructed. Combined with spectral analyses, we suggest the clay mineral contribution from Pearl River was mainly influenced by sea level change, while the East Asian summer monsoon controlled the contribution from Luzon. The strong precipitation rate related to intensive East Asian summer monsoon would have enhanced the denudation and

  10. A 400-kyr record of millennial-scale carbonate preservation events in the Southern Ocean: Implications for Atlantic Meridional Overturning Circulation and atmospheric CO2

    NASA Astrophysics Data System (ADS)

    Hodell, D. A.; Vautravers, M. J.; Barker, S.; Charles, C.; Crowhurst, S.

    2014-12-01

    Hodell et al. (2001) suggested that carbonate preservation in the deep Cape Basin represented a qualitative, high-resolution record of the temporal evolution of the carbonate saturation state of the deep sea. The carbonate signal reflects both transient events in the redistribution of alkalinity and DIC in the deep ocean and steady-state mass balance processes. Here we re-analyzed the carbonate records of Sites 1089/TN057-21 using an Avaatech XRF core scanner and measured elemental variations at 2.5-mm resolution for the past 400 kyrs. Log Ca/Ti is highly correlated to weight percent carbonate content and other dissolution proxies and resolves millennial-scale events in carbonate preservation. A high-pass filter removes the low-frequency (orbital) variability in carbonate preservation, which is attributed mainly to steady-state mass balance processes. The high-frequency (suborbital) component reflects transient responses to the redistribution of carbonate ion that is related mainly to changing deep-water circulation. During the last glacial period, distinct millennial-scale increases in carbonate preservation in piston core TN057-21 occurred during times of enhanced Atlantic Meridional Overtunring Circulation (AMOC) (Barker et al., 2010; Barker and Diz, 2014), as supported by increases in benthic δ13C and less radiogenic ɛNd values. Carbonate preservation peaked particularly during long, warm interstadials in Greenland when a deep water mass with high carbonate ion concentration was formed in the North Atlantic. Export of NADW may have been greater than the Holocene during some of these events ("overshoots") and/or preformed carbonate ion concentrations in North Atlantic source areas may have been higher owing to lower atmospheric CO2 and less carbonate production in surface water. Each South Atlantic carbonate peak is associated with the start of Antarctic cooling and declining or leveling of atmospheric CO2, reflecting the signature of a thermal bipolar seesaw

  11. Heritability of HR and BP Response To Exercise Training in the HERITAGE Family Study.

    ERIC Educational Resources Information Center

    Rice, Treva; Gagnon, Jacques; Leon, Arthur S.; Skinner, James S.; Wilmore, Jack H.; Bouchard, Claude; Rao, D. C.

    2002-01-01

    Assessed the heritability of response to exercise training in resting blood pressure (BP) and heart rate (HR) among sedentary Caucasians comprising 98 families who completed an exercise training program. Results indicated that the trainability of systolic BP and HR in families with elevated BP was partially determined by genetic factors. Diastolic…

  12. Levels of the E2 interacting protein TopBP1 modulate papillomavirus maintenance stage replication

    SciTech Connect

    Kanginakudru, Sriramana; DeSmet, Marsha; Thomas, Yanique; Morgan, Iain M.; Androphy, Elliot J.

    2015-04-15

    The evolutionarily conserved DNA topoisomerase II beta-binding protein 1 (TopBP1) functions in DNA replication, DNA damage response, and cell survival. We analyzed the role of TopBP1 in human and bovine papillomavirus genome replication. Consistent with prior reports, TopBP1 co-localized in discrete nuclear foci and was in complex with papillomavirus E2 protein. Similar to E2, TopBP1 is recruited to the region of the viral origin of replication during G1/S and early S phase. TopBP1 knockdown increased, while over-expression decreased transient virus replication, without affecting cell cycle. Similarly, using cell lines harboring HPV-16 or HPV-31 genome, TopBP1 knockdown increased while over-expression reduced viral copy number relative to genomic DNA. We propose a model in which TopBP1 serves dual roles in viral replication: it is essential for initiation of replication yet it restricts viral copy number. - Highlights: • Protein interaction study confirmed In-situ interaction between TopBP1 and E2. • TopBP1 present at papillomavirus ori in G1/S and early S phase of cell cycle. • TopBP1 knockdown increased, over-expression reduced virus replication. • TopBP1 protein level change did not influence cell survival or cell cycle. • TopBP1 displaced from papillomavirus ori after initiation of replication.

  13. RanBP2 Modulates Cox11 and Hexokinase I Activities and Haploinsufficiency of RanBP2 Causes Deficits in Glucose Metabolism

    PubMed Central

    Guruju, Mallikarjuna; Oswald, John; Raz, Dorit; Bush, Ronald A; Sieving, Paul A; Lu, Xinrong; Bock, Cheryl B; Ferreira, Paulo A

    2006-01-01

    The Ran-binding protein 2 (RanBP2) is a large multimodular and pleiotropic protein. Several molecular partners with distinct functions interacting specifically with selective modules of RanBP2 have been identified. Yet, the significance of these interactions with RanBP2 and the genetic and physiological role(s) of RanBP2 in a whole-animal model remain elusive. Here, we report the identification of two novel partners of RanBP2 and a novel physiological role of RanBP2 in a mouse model. RanBP2 associates in vitro and in vivo and colocalizes with the mitochondrial metallochaperone, Cox11, and the pacemaker of glycolysis, hexokinase type I (HKI) via its leucine-rich domain. The leucine-rich domain of RanBP2 also exhibits strong chaperone activity toward intermediate and mature folding species of Cox11 supporting a chaperone role of RanBP2 in the cytosol during Cox11 biogenesis. Cox11 partially colocalizes with HKI, thus supporting additional and distinct roles in cell function. Cox11 is a strong inhibitor of HKI, and RanBP2 suppresses the inhibitory activity of Cox11 over HKI. To probe the physiological role of RanBP2 and its role in HKI function, a mouse model harboring a genetically disrupted RanBP2 locus was generated. RanBP2−/− are embryonically lethal, and haploinsufficiency of RanBP2 in an inbred strain causes a pronounced decrease of HKI and ATP levels selectively in the central nervous system. Inbred RanBP2+/− mice also exhibit deficits in growth rates and glucose catabolism without impairment of glucose uptake and gluconeogenesis. These phenotypes are accompanied by a decrease in the electrophysiological responses of photosensory and postreceptoral neurons. Hence, RanBP2 and its partners emerge as critical modulators of neuronal HKI, glucose catabolism, energy homeostasis, and targets for metabolic, aging disorders and allied neuropathies. PMID:17069463

  14. Feasibility study report for the 200-BP-1 operable unit

    SciTech Connect

    Not Available

    1993-06-01

    This feasibility study examines a range of alternatives and provides recommendations for selecting a preferred alternative for remediating contamination at the 200-BP-1 operable unit. The 200-BP-1 operable unit is located in the center of the Hanford Site along the northern boundary of the 200 East Area. The 241-BY Tank Farm is located immediately to the south of the operable unit. 200-BP-1 is a source operable unit with contaminated soils associated primarily with nine inactive cribs (known as the 216-B cribs). These cribs were used for disposal of low-level radioactive liquid waste from U Plant uranium recovery operations, and waste storage tank condensate from the adjacent 241-BY Tank Farm. The cribs used for disposal of U Plant waste were in operation from 1955--1965, and the cribs used for disposal of tank condensate were in operation from 1965--1975. In addition to the cribs, four unplanned releases of radioactive materials have occurred within the operable unit. Contaminated surface soils associated with the unplanned releases have been consolidated over the cribs and covered with clean soil to reduce contaminant migration and exposure. Discharge of wastes to the cribs has resulted in soil and groundwater contamination. The groundwater is being addressed as part of the 200 East Aggregate Area, groundwater operable unit. Contaminated soils at the site can be categorized by the types of contaminants, their distribution in the soil column, and the risk posed by the various potential exposure pathways. Below the clean soil cover, the near surface soils contain low-levels of contamination with cesium-137, radium-226, strontium-90, thorium-228, and uranium. The lifetime incremental cancer risk associated with these soils if they were exposed at the surface is 9{times}10{sup {minus}5}.

  15. Estimating smoothness term for BP stereo matching with sparse disparities

    NASA Astrophysics Data System (ADS)

    He, Junxue; Li, Zhanming

    2011-06-01

    The belief propagation stereo matching algorithm has high computational cost and varied parameters. To address these problems and perform stereo matching in practical applications, we implement BP algorithm on cuda and propose an approach to estimate parameters of smoothness term in the energy function automatically. We use Harris corner detector and Pyramidal KLT feature tracker algorithm to extract a sparse disparity map. The rate of increase in the discontinuity cost can be compute out approximately. Experiments demonstrate that our approach is feasible and the approximate parameters of discontinuity cost can be computed out quickly.

  16. Expression and Localization of CaBP Ca2+ Binding Proteins in the Mouse Cochlea.

    PubMed

    Yang, Tian; Scholl, Elizabeth S; Pan, Ning; Fritzsch, Bernd; Haeseleer, Françoise; Lee, Amy

    2016-01-01

    CaBPs are a family of EF-hand Ca2+ binding proteins that are structurally similar to calmodulin. CaBPs can interact with, and yet differentially modulate, effectors that are regulated by calmodulin, such as Cav1 voltage-gated Ca2+ channels. Immunolabeling studies suggest that multiple CaBP family members (CaBP1, 2, 4, and 5) are expressed in the cochlea. To gain insights into the respective auditory functions of these CaBPs, we characterized the expression and cellular localization of CaBPs in the mouse cochlea. By quantitative reverse transcription PCR, we show that CaBP1 and CaBP2 are the major CaBPs expressed in mouse cochlea both before and after hearing onset. Of the three alternatively spliced variants of CaBP1 (caldendrin, CaBP1-L, and CaBP1-S) and CaBP2 (CaBP2-alt, CaBP2-L, CaBP2-S), caldendrin and CaBP2-alt are the most abundant. By in situ hybridization, probes recognizing caldendrin strongly label the spiral ganglion, while probes designed to recognize all three isoforms of CaBP1 weakly label both the inner and outer hair cells as well as the spiral ganglion. Within the spiral ganglion, caldendrin/CaBP1 labeling is associated with cells resembling satellite glial cells. CaBP2-alt is strongly expressed in inner hair cells both before and after hearing onset. Probes designed to recognize all three variants of CaBP2 strongly label inner hair cells before hearing onset and outer hair cells after the onset of hearing. Thus, CaBP1 and CaBP2 may have overlapping roles in regulating Ca2+ signaling in the hair cells, and CaBP1 may have an additional function in the spiral ganglion. Our findings provide a framework for understanding the role of CaBP family members in the auditory periphery. PMID:26809054

  17. Expression and Localization of CaBP Ca2+ Binding Proteins in the Mouse Cochlea

    PubMed Central

    Pan, Ning; Fritzsch, Bernd; Haeseleer, Françoise; Lee, Amy

    2016-01-01

    CaBPs are a family of EF-hand Ca2+ binding proteins that are structurally similar to calmodulin. CaBPs can interact with, and yet differentially modulate, effectors that are regulated by calmodulin, such as Cav1 voltage-gated Ca2+ channels. Immunolabeling studies suggest that multiple CaBP family members (CaBP1, 2, 4, and 5) are expressed in the cochlea. To gain insights into the respective auditory functions of these CaBPs, we characterized the expression and cellular localization of CaBPs in the mouse cochlea. By quantitative reverse transcription PCR, we show that CaBP1 and CaBP2 are the major CaBPs expressed in mouse cochlea both before and after hearing onset. Of the three alternatively spliced variants of CaBP1 (caldendrin, CaBP1-L, and CaBP1-S) and CaBP2 (CaBP2-alt, CaBP2-L, CaBP2-S), caldendrin and CaBP2-alt are the most abundant. By in situ hybridization, probes recognizing caldendrin strongly label the spiral ganglion, while probes designed to recognize all three isoforms of CaBP1 weakly label both the inner and outer hair cells as well as the spiral ganglion. Within the spiral ganglion, caldendrin/CaBP1 labeling is associated with cells resembling satellite glial cells. CaBP2-alt is strongly expressed in inner hair cells both before and after hearing onset. Probes designed to recognize all three variants of CaBP2 strongly label inner hair cells before hearing onset and outer hair cells after the onset of hearing. Thus, CaBP1 and CaBP2 may have overlapping roles in regulating Ca2+ signaling in the hair cells, and CaBP1 may have an additional function in the spiral ganglion. Our findings provide a framework for understanding the role of CaBP family members in the auditory periphery. PMID:26809054

  18. Geochemical multielement signatures of glacial and interglacial facies of the Okhotsk Sea deepwater sediments during the past 350 kyr: A response to global climate changes at the orbital and millennial scales

    NASA Astrophysics Data System (ADS)

    Chebykin, Eugene P.; Gorbarenko, Sergey A.; Stepanova, Ol'ga G.; Panov, Vsevolod S.; Goldberg, Evgeny L.

    2015-03-01

    The previously dated deepwater sediment core MR06-04 PC-7R (length 1723 cm; 350 kyr) recovered from the central Okhotsk Sea (OS) was analyzed for biogenic compounds and for 63 chemical elements (using the inductively coupled plasma-mass spectrometry method) with a high resolution (1 cm; ~200 years). A one box model with two main members" and mathematical methods (based on multielemental composition of sediments) for the calculation of weight fractions (at each time slice) of two main types of geochemical facies that dominate during considerably diverse climatic periods (glacial maxima and interglacial optima) were proposed and tested. This model can be applied to other analogous natural systems whose sedimentation is driven by two main types of geochemical facies. The application of the developed model to the studied core revealed that variations of weight fractions of the typical interglacial and glacial geochemical facies in the sediments along the core depth (named as warm and cold "covariators," respectively) change synchronously with global and regional climate variability. Profiles of warm and inversed cold covariators coincide tightly, and their values increase during warm marine isotope stages and substages and decrease during cold ones over the last 350 kyr. Millennial scale changes in covariators had occurred simultaneously with abrupt variability in the OS productivity and sediment lithology and with millennial global climate variability. Some discrepancies in the warm and inversed cold covariators calculated using specific mathematical treatments revealed the episodic influence of volcanogenic matter presented in the core by visible tephra layers and cryptotephras.

  19. AMP-activated protein kinase phosphorylates CtBP1 and down-regulates its activity

    SciTech Connect

    Kim, Jae-Hwan; Choi, Soo-Youn; Kang, Byung-Hee; Lee, Soon-Min; Cho, Eun-Jung; Youn, Hong-Duk

    2013-02-01

    Highlights: ► AMPK phosphorylates CtBP1 on serine 158. ► AMPK-mediated phosphorylation of CtBP1 causes the ubiquitination and nuclear export of CtBP1. ► AMPK downregulates the CtBP1-mediated repression of Bax transcription. -- Abstract: CtBP is a transcriptional repressor which plays a significant role in the regulation of cell proliferation and tumor progression. It was reported that glucose withdrawal causes induction of Bax due to the dissociation of CtBP from the Bax promoter. However, the precise mechanism involved in the regulation of CtBP still remains unclear. In this study, we found that an activated AMP-activated protein kinase (AMPK) phosphorylates CtBP1 on Ser-158 upon metabolic stresses. Moreover, AMPK-mediated phosphorylation of CtBP1 (S158) attenuates the repressive function of CtBP1. We also confirmed that triggering activation of AMPK by various factors resulted in an increase of Bax gene expression. These findings provide connections of AMPK with CtBP1-mediated regulation of Bax expression for cell death under metabolic stresses.

  20. Phosphorylation and Rapid Relocalization of 53BP1 to Nuclear Foci upon DNA Damage

    PubMed Central

    Anderson, Lindsay; Henderson, Catherine; Adachi, Yasuhisa

    2001-01-01

    53BP1 is a human BRCT protein that was originally identified as a p53-interacting protein by the Saccharomyces cerevisiae two-hybrid screen. Although the carboxyl-terminal BRCT domain shows similarity to Crb2, a DNA damage checkpoint protein in fission yeast, there is no evidence so far that implicates 53BP1 in the checkpoint. We have identified a Xenopus homologue of 53BP1 (XL53BP1). XL53BP1 is associated with chromatin and, in some cells, localized to a few large foci under normal conditions. Gamma-ray irradiation induces increased numbers of the nuclear foci in a dose-dependent manner. The damage-induced 53BP1 foci appear rapidly (in 30 min) after irradiation, and de novo protein synthesis is not required for this response. In human cells, 53BP1 foci colocalize with Mrel1 foci at later stages of the postirradiation period. XL53BP1 is hyperphosphorylated after X-ray irradiation, and inhibitors of ATM-related kinases delay the relocalization and reduce the phosphorylation of XL53BP1 in response to X-irradiation. In AT cells, which lack ATM kinase, the irradiation-induced responses of 53BP1 are similarly affected. These results suggest a role for 53BP1 in the DNA damage response and/or checkpoint control which may involve signaling of damage to p53. PMID:11238909

  1. IGF2BP3 modulates the interaction of invasion-associated transcripts with RISC

    PubMed Central

    Ennajdaoui, Hanane; Howard, Jonathan M.; Sterne-Weiler, Timothy; Jahanbani, Fereshteh; Coyne, Doyle J.; Uren, Philip J.; Dargyte, Marija; Katzman, Sol; Draper, Jolene M.; Wallace, Andrew; Cazarez, Oscar; Burns, Suzanne C.; Qiao, Mei; Hinck, Lindsay; Smith, Andrew D.; Toloue, Masoud M.; Blencowe, Benjamin J.; Penalva, Luiz O.F.; Sanford, Jeremy R.

    2016-01-01

    Summary Insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) expression correlates with malignancy. But its role(s) in pathogenesis remain enigmatic. Here, we interrogated the IGF2BP3-RNA interaction network in pancreatic ductal adenocarcinoma (PDAC) cells. Using a combination of genome-wide approaches we identify 164 direct mRNA targets of IGF2BP3. These transcripts encode proteins enriched for functions such as cell migration, proliferation and adhesion. Loss of IGF2BP3 reduced PDAC cell invasiveness and remodeled focal adhesion junctions. Individual-nucleotide resolution crosslinking immunoprecipitation (iCLIP) revealed significant overlap of IGF2BP3 and miRNA binding sites. IGF2BP3 promotes association of the RNA induced silencing complex (RISC) with specific transcripts. Our results show that IGF2BP3 influences a malignancy-associated RNA regulon by modulating miRNA-mRNA interactions. PMID:27210763

  2. IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC.

    PubMed

    Ennajdaoui, Hanane; Howard, Jonathan M; Sterne-Weiler, Timothy; Jahanbani, Fereshteh; Coyne, Doyle J; Uren, Philip J; Dargyte, Marija; Katzman, Sol; Draper, Jolene M; Wallace, Andrew; Cazarez, Oscar; Burns, Suzanne C; Qiao, Mei; Hinck, Lindsay; Smith, Andrew D; Toloue, Masoud M; Blencowe, Benjamin J; Penalva, Luiz O F; Sanford, Jeremy R

    2016-05-31

    Insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) expression correlates with malignancy, but its role(s) in pathogenesis remains enigmatic. We interrogated the IGF2BP3-RNA interaction network in pancreatic ductal adenocarcinoma (PDAC) cells. Using a combination of genome-wide approaches, we have identified 164 direct mRNA targets of IGF2BP3. These transcripts encode proteins enriched for functions such as cell migration, proliferation, and adhesion. Loss of IGF2BP3 reduced PDAC cell invasiveness and remodeled focal adhesion junctions. Individual nucleotide resolution crosslinking immunoprecipitation (iCLIP) revealed significant overlap of IGF2BP3 and microRNA (miRNA) binding sites. IGF2BP3 promotes association of the RNA-induced silencing complex (RISC) with specific transcripts. Our results show that IGF2BP3 influences a malignancy-associated RNA regulon by modulating miRNA-mRNA interactions. PMID:27210763

  3. Phosphorylated 4E-BP1 is Associated with Poor Survival in Melanoma

    PubMed Central

    O’Reilly, Kathryn E.; Warycha, Melanie; Davies, Michael A.; Rodrik, Vanessa; Zhou, Xi K.; Yee, Herman; Polsky, David; Pavlick, Anna C.; Rosen, Neal; Bhardwaj, Nina; Mills, Gordon; Osman, Iman

    2009-01-01

    Purpose Both the PI3K/AKT and RAS/MAPK signal transduction pathways mediate 4E-BP1 phosphorylation, releasing 4E-BP1 from the mRNA cap and permitting translation initiation. Given the prevalence of PTEN and B-RAF mutations in melanoma, we first examined translation initiation, as measured by phosphorylated 4E-BP1, in metastatic melanoma tissues and cell lines. We then tested the association between amounts of total and phosphorylated 4E-BP1 and patient survival. Experimental Design Seven human metastatic melanoma cells lines and 72 metastatic melanoma patients with accessible metastatic tumor tissues and extended follow up information were studied. Expression of 4E-BP1 transcript, total 4E-BP1 protein, and phosphorylated 4E-BP1 were examined. The relationship between 4E-BP1 transcript and protein expression was assessed in a subset of patient tumors (n=41). The association between total and phospho-4E-BP1 levels and survival was examined in the larger cohort of patients (n=72). Results 4E-BP1 was hyperphosphorylated in 4/7 melanoma cell lines harboring BRAF and PTEN mutations as compared to untransformed melanocytes or RAS/RAF/PTEN wild type melanoma cells. 4E-BP1 transcript correlated with 4E-BP1 total protein levels as measured by the semi-quantitative reverse phase protein array (p=0.012). High levels of phosphorylated 4E-BP1 were associated with worse overall and post-recurrence survival (p=0.02, 0.0003 respectively). Conclusion Our data demonstrate that translation initiation is a common event in human metastatic melanoma and correlates with worse prognosis. Therefore, effective inhibition of the pathways responsible for 4E-BP1 phosphorylation should be considered to improve the treatment outcome of metastatic melanoma patients. PMID:19336517

  4. SPECTROPOLARIMETRY OF THE CLASSICAL T TAURI STAR BP TAU

    SciTech Connect

    Chen, Wei; Johns-Krull, Christopher M. E-mail: cmj@rice.edu

    2013-10-20

    We implement a least-squares deconvolution (LSD) code to study magnetic fields on cool stars. We first apply our code to high-resolution optical echelle spectra of 53 Cam (a magnetic Ap star) and three well-studied cool stars (Arcturus, 61 Cyg A, and ξ Boo A) as well as the Sun (by observing the asteroid Vesta) as tests of the code and the instrumentation. Our analysis is based on several hundred photospheric lines spanning the wavelength range 5000 Å to 9000 Å. We then apply our LSD code to six nights of data on the Classical T Tauri Star BP Tau. A maximum longitudinal field of 370 ± 80 G is detected from the photospheric lines on BP Tau. A 1.8 kG dipole tilted at 129° with respect to the rotation axis and a 1.4 kG octupole tilted at 104° with respect to the rotation axis, both with a filling factor of 0.25, best fit our LSD Stokes V profiles. Measurements of several emission lines (He I 5876 Å, Ca II 8498 Å, and 8542 Å) show the presence of strong magnetic fields in the line formation regions of these lines, which are believed to be the base of the accretion footpoints. The field strength measured from these lines shows night-to-night variability consistent with rotation of the star.

  5. Spectropolarimetry of the Classical T Tauri Star BP Tau

    NASA Astrophysics Data System (ADS)

    Chen, Wei; Johns-Krull, Christopher M.

    2013-10-01

    We implement a least-squares deconvolution (LSD) code to study magnetic fields on cool stars. We first apply our code to high-resolution optical echelle spectra of 53 Cam (a magnetic Ap star) and three well-studied cool stars (Arcturus, 61 Cyg A, and ξ Boo A) as well as the Sun (by observing the asteroid Vesta) as tests of the code and the instrumentation. Our analysis is based on several hundred photospheric lines spanning the wavelength range 5000 Å to 9000 Å. We then apply our LSD code to six nights of data on the Classical T Tauri Star BP Tau. A maximum longitudinal field of 370 ± 80 G is detected from the photospheric lines on BP Tau. A 1.8 kG dipole tilted at 129° with respect to the rotation axis and a 1.4 kG octupole tilted at 104° with respect to the rotation axis, both with a filling factor of 0.25, best fit our LSD Stokes V profiles. Measurements of several emission lines (He I 5876 Å, Ca II 8498 Å, and 8542 Å) show the presence of strong magnetic fields in the line formation regions of these lines, which are believed to be the base of the accretion footpoints. The field strength measured from these lines shows night-to-night variability consistent with rotation of the star.

  6. Silencing of CtBP1 suppresses the migration in human glioma cells.

    PubMed

    Zhao, Chengjin; Shen, Yifen; Tao, Xuelei; Xu, Jian; Lu, Junjie; Liu, Chao; Xu, Zhiwei; Tang, Qing; Tao, Tao; Zhang, Xiubing

    2016-06-01

    Carboxyl-terminal binding protein 1 (CtBP1), up-regulated in various types of human cancers, has been functionally associated with proliferation, anti-apoptosis, and EMT in vitro studies. However, the functional significance of CtBP1 in the pathophysiology of glioma remains unknown. In the present study, we showed the expression of CtBP1 was markedly higher in glioma tissues compared with normal brain tissues by Western blot analysis. Immunohistochemical analysis revealed that CtBP1 mainly localized in the nucleus of glioma cells. Statistical analysis suggested the upregulation of CtBP1 was considerably correlated with the WHO grade (P < 0.05) and those patients with high CtBP1 levels exhibited shorter survival time (P < 0.01). Silencing CtBP1 by short hairpin RNAi caused an inhibition of cell migration. Moreover, knockdown of CtBP1 increases E-cadherin expression and decreases vimentin expression. These data uncovered that CtBP1 protein is a valuable marker of glioma pathogenic process and that CtBP1 can serve as a novel prognostic marker for glioma therapy. PMID:27160109

  7. E4BP4 is a cardiac survival factor and essential for embryonic heart development.

    PubMed

    Weng, Yi-Jiun; Hsieh, Dennis Jine-Yuan; Kuo, Wei-Wen; Lai, Tung-Yuan; Hsu, Hsi-Hsien; Tsai, Chang-Hai; Tsai, Fuu-Jen; Lin, Ding-Yu; Lin, James A; Huang, Chih-Yang; Tung, Kwong-Chung

    2010-07-01

    The bZIP transcription factor E4BP4, has been demonstrated to be a survival factor in pro-B lymphocytes. GATA factors play important roles in transducing the IL-3 survival signal and transactivating the downstream survival gene, E4BP4. In heart, GATA sites are essential for proper transcription of several cardiac genes, and GATA-4 is a mediator of cardiomyocyte survival. However, the role E4BP4 plays in heart is still poorly understood. In this study, Dot-blot hybridization assays using Dig-labeled RNA probes revealed that the E4BP4 gene was expressed in cardiac tissue from several species including, monkey, dog, rabbit, and human. Western blot analysis showed that the E4BP4 protein was consistently present in all of these four species. Furthermore, immunohistochemistry revealed that the E4BP4 protein was overexpressed in diseased heart tissue in comparison with normal heart tissue. In addition, the overexpression of E4BP4 in vitro activated cell survival signaling pathway of cardiomyocytes. At last, siRNA-mediated knock down of E4BP4 in zebrafish resulted in malformed looping of the embryonic heart tube and decreased heart beating. Based on these results, we conclude that E4BP4 plays as a survival factor in heart and E4BP4 is essential for proper embryonic heart development. PMID:20186462

  8. An Analysis of the Rapidly Rotating Bp star HD 133880

    NASA Technical Reports Server (NTRS)

    Bailey, J. D.; Grunhut, J.; Shultz, M.; Wade, G.; Landstreet, J. D.; Bohlender, D.; Lim, J.; Wong, K.; Drake, S.; Linsky, J.

    2012-01-01

    HD 133880 is a rapidly rotating chemically peculiar B-type (Bp) star (nu sin i approx = 103km/s) and is host to one of the strongest magnetic fields of any Ap/Bp star. A member of the Upper Centaurus Lupus association, it is a star with a well-determined age of 16 Myr. 12 new spectra, four of which are polarimetric, obtained from the FEROS, ESPaDOnS and HARPS instruments, provide sufficient material from which to re-evaluate the magnetic field and obtain a first approximation to the atmospheric abundance distributions of He, O, Mg, Si, Ti. Cr, Fe, Ni, Pr and Nd. An abundance analysis was carried out using ZEEMAN, a program which synthesizes spectral line profiles for stars with permeating magnetic fields. The magnetic field structure was characterized by a colinear multipole expansion from the observed variations of the longitudinal and surface fields with rotational phase. Both magnetic hemispheres are clearly visible during the stellar rotation, and thus a three-ring abundance distribution model encompassing both magnetic poles and magnetic equator with equal spans in colatitude was adopted. Using the new magnetic field measurements and optical photometry together with previously published data, we refine the period of HD 133880 to P = 0.877 476 +/- 0.000009 d. Our simple axisymmetric magnetic field model is based on a predominantly quadrupolar component that roughly describes the field variations. Using spectrum synthesis, we derived mean abundances for O, Mg, Si, Ti, Cr, Fe and Pr. All elements; except Mg, are overabundant compared to the Son. Mg appears to be approximately uniform over the stellar surface, while all other elements are more abundant in the negative magnetic hemisphere than in the positive magnetic hemisphere. In contrast to most Ap/Bp stars which show an underabundance in 0, in HD 133880 this element is clearly overabundant compared to the solar abundance ratio. In studying the Ha and Paschen lines in the optical spectra, we could not

  9. Identify Melatonin as a Novel Therapeutic Reagent in the Treatment of 1-Bromopropane(1-BP) Intoxication

    PubMed Central

    Xu, Yongpeng; Wang, Shuo; Jiang, Lulu; Wang, Hui; Yang, Yilin; Li, Ming; Wang, Xujing; Zhao, Xiulan; Xie, Keqin

    2016-01-01

    Abstract 1-Bromopropane (1-BP) has been used as an alternative for fluoride compounds and 1-BP intoxication may involve lung, liver, and central neural system (CNS). Our previous studies showed that 1-BP impaired memory ability by compromising antioxidant cellular defenses. Melatonin is a powerful endogenous antioxidant, and the objective of this study was to explore the therapeutic role of melatonin in the treatment of 1-BP intoxication. Rats were intragastrically treated with 1-BP with or without melatonin, and then sacrificed on 27th day after 1-BP administration. The Morris water maze (MWM) test was used to evaluate the spatial learning and memory ability of the experimental animals, and NeuN staining was performed to assess neuron loss in hippocampus. We found that rats treated with 1-BP spent more time and swam longer distance before landing on the hidden platform with a comparable swimming speed, which was markedly mitigated by the pretreatment with melatonin in a concentration-dependent manner. In addition, 1-BP-induced notable decrease in neuron population in hippocampus by promoting apoptosis, and melatonin pretreatment attenuated those changes in brain. The GSH/GSSG ratio was proportionately decreased and heme oxygenase 1 was increased in the rats exposed to 1-BP (Figure 6), and administration of melatonin restored them. Meanwhile, MDA, the level of lipid peroxidation product, was significantly increased upon exposed to 1-BP, which was significantly attenuated by melatonin pretreatment, indicating that administration of 1-BP could interfere with redox homeostasis of brain in rat, and such 1-BP-induced biomedical changes were reversed by treatment with melatonin. We conclude that treatment with melatonin attenuates 1-BP-induced CNS toxicity through its ROS scavenging effect. PMID:26817862

  10. Identify Melatonin as a Novel Therapeutic Reagent in the Treatment of 1-Bromopropane(1-BP) Intoxication.

    PubMed

    Xu, Yongpeng; Wang, Shuo; Jiang, Lulu; Wang, Hui; Yang, Yilin; Li, Ming; Wang, Xujing; Zhao, Xiulan; Xie, Keqin

    2016-01-01

    1-Bromopropane (1-BP) has been used as an alternative for fluoride compounds and 1-BP intoxication may involve lung, liver, and central neural system (CNS). Our previous studies showed that 1-BP impaired memory ability by compromising antioxidant cellular defenses. Melatonin is a powerful endogenousantioxidant, and the objective of this study was to explore the therapeutic role of melatonin in the treatment of 1-BP intoxication. Rats were intragastrically treated with 1-BP with or without melatonin, and then sacrificed on 27th day after 1-BP administration. The Morris water maze (MWM) test was used to evaluate the spatial learning and memory ability of the experimental animals, and NeuN staining was performed to assess neuron loss in hippocampus. We found that rats treated with 1-BP spent more time and swam longer distance before landing on the hidden platform with a comparable swimming speed, which was markedly mitigated by the pretreatment with melatonin in a concentration-dependent manner. In addition, 1-BP-induced notable decrease in neuron population in hippocampus by promoting apoptosis, and melatonin pretreatment attenuated those changes in brain. The GSH/GSSG ratio was proportionately decreased and heme oxygenase 1 was increased in the rats exposed to 1-BP (Figure 6), and administration of melatonin restored them. Meanwhile, MDA, the level of lipid peroxidation product, was significantly increased upon exposed to 1-BP, which was significantly attenuated by melatonin pretreatment, indicating that administration of 1-BP could interfere with redox homeostasis of brain in rat, and such 1-BP-induced biomedical changes were reversed by treatment with melatonin.We conclude that treatment with melatonin attenuates 1-BP-induced CNS toxicity through its ROS scavenging effect. PMID:26817862

  11. A photometric and spectrographic study of BP Pegasi

    SciTech Connect

    Kim, C.; Mcnamara, D.H.; Joner, M.D. Brigham Young Univ., Provo, UT )

    1989-11-01

    Photometric (uvby beta) and spectrographic observations of the dwarf Cepheid BP Peg are discussed. The observations are used to derive a reddening value of E(b-y) = 0.067 m. An effective temperature of 7470 K, a mean surface gravity, log g = 3.85, and a Fe/H abundance ratio of - 0.08 are obtained. Pulsation theory and stellar model sequences yield M(bol) = 1.4 m, mass = 1.85 solar masses, and age = 1.3 X 10 to the 9th yrs. Also, the radial-velocity data show a mean radial velocity of - 30 km/s and a total velocity range of 36 km/s. 14 refs.

  12. BP Cherry Point Cogeneration Project, Draft Environmental Impact Statement

    SciTech Connect

    N /A

    2003-09-19

    BP West Coast Products, LLC (BP or the Applicant) proposes to construct and operate a nominal 720-megawatt (MW), natural-gas-fired, combined-cycle cogeneration facility next to the existing BP Cherry Point Refinery in Whatcom County, Washington. The Applicant also owns and operates the refinery, but the cogeneration facility and the refinery would be operated as separate business units. The cogeneration facility and its ancillary infrastructure would provide steam and 85 MW of electricity to meet the operating needs of the refinery and 635 MW of electrical power for local and regional consumption. The proposed cogeneration facility would be located between Ferndale and Blaine in northwestern Whatcom County, Washington. The Canadian border is approximately 8 miles north of the proposed project site. The Washington State Energy Facility Site Evaluation Council (EFSEC) has jurisdiction over the evaluation of major energy facilities including the proposed project. As such, EFSEC will recommend approval or denial of the proposed cogeneration facility to the governor of Washington after an environmental review. On June 3, 2002, the Applicant filed an Application for Site Certification (ASC No. 2002-01) with EFSEC in accordance with Washington Administrative Code (WAC) 463-42. On April 22, 2003, the Applicant submitted an amended ASC that included, among other things, a change from air to water cooling. With the submission of the ASC and in accordance with the State Environmental Policy Act (SEPA) (WAC 463-47), EFSEC is evaluating the siting of the proposed project and conducting an environmental review with this Environmental Impact Statement (EIS). Because the proposed project requires federal agency approvals and permits, this EIS is intended to meet the requirements under both SEPA and the National Environmental Policy Act (NEPA). The Bonneville Power Administration (Bonneville) and U.S. Army Corps of Engineers (Corps) also will use this EIS as part of their

  13. Morphologic and Geochronological constraints on the long (> Ma) and short (10-100 Kyr) term vertical rates on south Tibetan normal faults.

    NASA Astrophysics Data System (ADS)

    Kali, E.; van der Woerd, J.; Arnaud, N.; Leloup, P. H.; Mahéo, G.; Liu-Zeng, J.; Chevalier, M. L.; Lacassin, R.; Tapponnier, P.; Thuizat, R.

    2009-04-01

    Quantification of slip and exhumation rates along the long recognized north-south trending active normal faults of the Tibetan plateau are key data in order to constrain mechanical models of the geodynamic evolution of the India-Asia convergence zone. In this study, we combine morphologic, structural, petrological analysis and low to medium thermo-chronology of Quaternary and basement rocks in order to compare short-term and long-term fault rates along two of the main Tibetan rifts systems: Yadong-Gulu and Xainza-Dinggye. At the southern end of the Xainza-Dingyye rift system the Ama Drime range (Everest region) is a horst flanked on each side by N-S trending ductile normal shear zones and active normal faults. Petrological studies combined with U/Pb and Ar/Ar geochronology reveal that the horst formation induced an exhumation on the order of 2 to 4 kbar (7 to 15 km), starting at ~12 Ma. This corresponds to exhumation rates of 0.6 to 1.3 mm/year. Low temperature geochronology (apatite (U-Th)/He dating) indicate Pliocene apparent exhumation rates of about 1 mm/yr since ~5 Ma for the whole massif (this study, Jessup et al., 2008). Short term fault rates can be obtained using cosmogenic nuclide exposure ages of offset geomorphic features such as terraces or moraines. Such features are abundant along the western flank of the Ama Drime range, where the Kharta active fault separates the range from the Kharta basin where the Arun river has abandoned fluvial terraces. The river crosses the fault three times carving deep gorges into the footwall before finally crossing the Himalayas. In the southern part of the Kharta basin, river terraces ~100 m above the present riverbed are offset between 10 and 15 m by one branch of the normal fault. 10Be cosmogenic nuclide exposure ages of these terraces range between 9 and 11 kyr, consistent with aggradation after the Last Glacial Maximum (LGM ~20 ka), followed by rapid incision of the Arun. Together, offsets and ages imply a vertical

  14. Trypanosoma cruzi: specific detection of parasites by PCR in infected humans and vectors using a set of primers (BP1/BP2) targeted to a nuclear DNA sequence.

    PubMed

    Silber, A M; Búa, J; Porcel, B M; Segura, E L; Ruiz, A M

    1997-03-01

    In the present work we evaluate Trypanosoma cruzi DNA detection by PCR using the nuclear oligonucleotides BP1/BP2 as primers. These primers are targeted to the 5' and 3' ends of the coding region for the flagellar protein F29. An amplification product of BP1/BP2 is a DNA band 692 bp long. Titration assays were performed to evaluate the minimum amount of parasite DNA that can be detected by this assay, resulting in 10 fg (equivalent to about 1/20 of the genome). The assay was also performed using T. cruzi DNA from different strains, clones, and human-derived isolates obtaining, in all cases, amplification products. No DNA amplification was observed when the PCR was performed using DNA from Leishmania braziliensis, but when T. rangeli DNA was used, a 615-bp-long fragment was amplified. Under appropriate gel conditions T. cruzi and T. rangeli DNA amplicons could be differentiated. When both conventional xenodiagnosis and PCR detection of parasite DNA in the feces of insect vectors fed with blood from infected patients were compared, 10 of 20 samples were positive by both techniques. However, 2 other samples with positive serology were also positive by PCR. When PCR was performed on blood samples from infected and uninfected individuals, 62 of 65 serologically positive human samples amplified the BP1/BP2 692-bp T. cruzi DNA fragment (sensitivity >95%). The 3 negative samples were positive when Southern blot hybridization was performed using the radiolabeled PCR amplification product as probe (sensitivity 100%). PMID:9085919

  15. Lamin A/C-dependent interaction with 53BP1 promotes cellular responses to DNA damage

    PubMed Central

    Gibbs-Seymour, Ian; Markiewicz, Ewa; Bekker-Jensen, Simon; Mailand, Niels; Hutchison, Christopher J

    2015-01-01

    Lamins A/C have been implicated in DNA damage response pathways. We show that the DNA repair protein 53BP1 is a lamin A/C binding protein. In undamaged human dermal fibroblasts (HDF), 53BP1 is a nucleoskeleton protein. 53BP1 binds to lamins A/C via its Tudor domain, and this is abrogated by DNA damage. Lamins A/C regulate 53BP1 levels and consequently lamin A/C-null HDF display a 53BP1 null-like phenotype. Our data favour a model in which lamins A/C maintain a nucleoplasmic pool of 53BP1 in order to facilitate its rapid recruitment to sites of DNA damage and could explain why an absence of lamin A/C accelerates aging. PMID:25645366

  16. About the {open_quotes}Asian{close_quotes}-specific 9-bp deletion of mtDNA...

    SciTech Connect

    Torroni, A.; Petrozzi, M.; Santolamazza, P.

    1995-08-01

    The 9-bp deletion between the COII and tRNA{sup Lys} genes is due to the lack of one of two adjacent copies of a 9-bp sequence usually present in human mtDNA. This mutation is very common in Asians and populations of Asian ancestry (e.g., Polynesians and Amerinds) and often has been considered and ethnic-specific polymorphism for these populations. We now report the detection of the COII-tRNA{sup Lys} 9-bp deletion in an individual of Italian descent. To our knowledge, this is the first time that the 9-bp deletion has been observed in Europeans. 19 refs.

  17. The relationship between prenatal exposure to BP-3 and Hirschsprung's disease.

    PubMed

    Huo, Weiwei; Cai, Peng; Chen, Minjian; Li, Hongxing; Tang, Junwei; Xu, Chao; Zhu, Dongmei; Tang, Weibing; Xia, Yankai

    2016-02-01

    Hirschsprung's disease (HSCR) is neonatal intestinal abnormality which derived from the faliure of enteric neural crest cells migration to hindgut during embryogenesis from 5 to 12 weeks. Currenly, the knowledge of environmental factors contributing to HSCR is still scarce. Benzophenone-3 (BP-3) is one of the most widely used UV filters, and has weak estrogen and strong anti-androgenic effects. In order to examine the effect of maternal BP-3 exposure on development of offspring and explore the potential mechanism, we conducted case and control study and in vitro study. In this work, BP-3 concertrations in maternal urine was detected by ultra-high performance liquid chromatography. Besides, we investigated the cytotoxicity and receptor tyrosine kinase (RET) expression in cells exposed to BP-3. The results showed that maternal BP-3 exposure was associated with offspring's HSCR in the population as well as inhibited migration of 293T and SH-SY5Y cells. What's more, we discovered dose-response relationship between RET expression and BP-3 exposure dose, and miR-218 and some other genes involved in SLIT2/ROBO1-miR-218-RET/PLAG1 pathway were also related to BP-3 exposure. Therefore, we deduced that BP-3 influenced cell migration via SLIT2/ROBO1-miR-218-RET/PLAG1 pathway. Our study firstly revealed the relationship between maternal BP-3 exposure and HSCR as well as its potential mechanism. PMID:26454118

  18. An analysis of the rapidly rotating Bp star HD 133880

    NASA Astrophysics Data System (ADS)

    Bailey, J. D.; Grunhut, J.; Shultz, M.; Wade, G.; Landstreet, J. D.; Bohlender, D.; Lim, J.; Wong, K.; Drake, S.; Linsky, J.

    2012-06-01

    HD 133880 is a rapidly rotating chemically peculiar B-type (Bp) star (v sin i≃ 103 km s-1) and is host to one of the strongest magnetic fields of any Ap/Bp star. A member of the Upper Centaurus Lupus association, it is a star with a well-determined age of 16 Myr. 12 new spectra, four of which are polarimetric, obtained from the FEROS, ESPaDOnS and HARPS instruments, provide sufficient material from which to re-evaluate the magnetic field and obtain a first approximation to the atmospheric abundance distributions of He, O, Mg, Si, Ti, Cr, Fe, Ni, Pr and Nd. An abundance analysis was carried out using ZEEMAN, a program which synthesizes spectral line profiles for stars with permeating magnetic fields. The magnetic field structure was characterized by a colinear multipole expansion from the observed variations of the longitudinal and surface fields with rotational phase. Both magnetic hemispheres are clearly visible during the stellar rotation, and thus a three-ring abundance distribution model encompassing both magnetic poles and magnetic equator with equal spans in colatitude was adopted. Using the new magnetic field measurements and optical photometry together with previously published data, we refine the period of HD 133880 to P= 0.877 476 ± 0.000 009 d. Our simple axisymmetric magnetic field model is based on a predominantly quadrupolar component that roughly describes the field variations. Using spectrum synthesis, we derived mean abundances for O, Mg, Si, Ti, Cr, Fe and Pr. All elements, except Mg, are overabundant compared to the Sun. Mg appears to be approximately uniform over the stellar surface, while all other elements are more abundant in the negative magnetic hemisphere than in the positive magnetic hemisphere. In contrast to most Ap/Bp stars which show an underabundance in O, in HD 133880 this element is clearly overabundant compared to the solar abundance ratio. In studying the Hα and Paschen lines in the optical spectra, we could not unambiguously

  19. Design and characterization of novel antimicrobial peptides, R-BP100 and RW-BP100, with activity against Gram-negative and Gram-positive bacteria.

    PubMed

    Torcato, Inês M; Huang, Yen-Hua; Franquelim, Henri G; Gaspar, Diana; Craik, David J; Castanho, Miguel A R B; Troeira Henriques, Sónia

    2013-03-01

    BP100 is a short cationic antimicrobial peptide with a mechanism of action dependent on peptide-lipid interactions and microbial surface charge neutralization. Although active against Gram-negative bacteria, BP100 is inactive against Gram-positive bacteria. In this study we report two newly designed BP100 analogues, RW-BP100 and R-BP100 that have the Tyr residue replaced with a Trp and/or the Lys residues replaced with an Arg. The new analogues in addition to being active against Gram-negative bacteria, possess activity against all tested Gram-positive bacteria. Mechanistic studies using atomic force microscopy, surface plasmon resonance and fluorescence methodologies reveal that the antibacterial efficiency follows the affinity for bacterial membrane. The studies suggest that the activity of BP100 and its analogues against Gram-negative bacteria is mainly driven by electrostatic interactions with the lipopolysaccharide layer and is followed by binding to and disruption of the inner membrane, whereas activity against Gram-positive bacteria, in addition to electrostatic attraction to the exposed lipoteichoic acids, requires an ability to more deeply insert in the membrane environment, which is favoured with Arg residues and is facilitated in the presence of a Trp residue. Knowledge on the mechanism of action of these antimicrobial peptides provides information that assists in the design of antimicrobials with higher efficacy and broader spectra of action, but also on the design of peptides with higher specificity if required. PMID:23246973

  20. Lyapunov Exponent Criterion in the CR3BP

    NASA Astrophysics Data System (ADS)

    Quarles, Billy; Eberle, Jason; Cuntz, Manfred; Musielak, Zdzislaw

    2010-10-01

    Our specific focus is to describe the motion of an extra solar planet in a binary star system. We aim to accomplish this by using the methods of chaos theory as an alternate method to our previously established Hodograph method in the circular restricted 3-body problem (CR3BP). Previously Eberle et al. (2010) has shown that a parameter space exists depending only on the mass ratio μ and distance ratio ρo which allowed them to identify regions of stability. Our method will validate the previous results while also providing more information relating to the presence of resonances and their effects on orbital stability. We extend the previous studies by increasing the simulation time, applying the method of Lyapunov exponents, calculating the time series spectrum of the orbit, and determining the Lyapunov dimension. The obtained results demonstrate when a system becomes unstable by orbital energy criterion and the method of Lyapunov exponents provides a quantitative classification scale to characterize the instability. By applying the maximum Lyapunov exponent (MLE) to the parameter space, we determine a region of stability with MLE values larger than the surrounding region. The time series spectra and the Lyapunov Dimension methods are used to illustrate the reasons behind the stability plateau which eludes to the resonance phenomena.

  1. The BP oil spill and the bounty of Plaquemines Parish.

    PubMed

    Fertel, Randy

    2011-01-01

    The source of 25 to 30 percent of America's seafood, the Mississippi River Delta's cornucopian world is now uncertain. And yet, even if shrimp, oysters, and finfish are unaffected by the BP Oil Spill - a big if - one can already reflect on the passing of the culture once built upon gathering them. For almost three centuries, levees made life possible along the riverbanks and in the wetlands beyond. Those same levees also ensured the wetlands would eventually melt away into the Gulf. Cutting off the silt left behind during annual river inundations subjected the fragile land to erosion. Sulfur, natural gas, and oil production companies dug twenty thousand miles of canals to gain more direct routes to their fields and to pump out their mineral wealth. This caused salt-water intrusion that killed off plant life and caused more erosion. The world that sustained my Plaquemines ancestors was less subject to collapse following disasters not only because the ecosystem before the wetlands' ongoing loss was then more vibrant, complex, and robust; but also because their lives, especially their culinary lives, were more vibrant, complex, and robust. Life was hard, but when it came to putting food on the table, life followed the seasons. PMID:21591308

  2. Role of Transcriptional Corepressor CtBP1 in Prostate Cancer Progression12

    PubMed Central

    Wang, Rui; Asangani, Irfan A; Chakravarthi, Balabhadrapatruni VSK; Ateeq, Bushra; Lonigro, Robert J; Cao, Qi; Mani, Ram-Shankar; Camacho, Daniel F; McGregor, Natalie; Schumann, Taibriana EW; Jing, Xiaojun; Menawat, Radhika; Tomlins, Scott A; Zheng, Heng; Otte, Arie P; Mehra, Rohit; Siddiqui, Javed; Dhanasekaran, Saravana M; Nyati, Mukesh K; Pienta, Kenneth J; Palanisamy, Nallasivam; Kunju, Lakshmi P; Rubin, Mark A; Chinnaiyan, Arul M; Varambally, Sooryanarayana

    2012-01-01

    Transcriptional repressors and corepressors play a critical role in cellular homeostasis and are frequently altered in cancer. C-terminal binding protein 1 (CtBP1), a transcriptional corepressor that regulates the expression of tumor suppressors and genes involved in cell death, is known to play a role in multiple cancers. In this study, we observed the overexpression and mislocalization of CtBP1 in metastatic prostate cancer and demonstrated the functional significance of CtBP1 in prostate cancer progression. Transient and stable knockdown of CtBP1 in prostate cancer cells inhibited their proliferation and invasion. Expression profiling studies of prostate cancer cell lines revealed that multiple tumor suppressor genes are repressed by CtBP1. Furthermore, our studies indicate a role for CtBP1 in conferring radiation resistance to prostate cancer cell lines. In vivo studies using chicken chorioallantoic membrane assay, xenograft studies, and murine metastasis models suggested a role for CtBP1 in prostate tumor growth and metastasis. Taken together, our studies demonstrated that dysregulated expression of CtBP1 plays an important role in prostate cancer progression and may serve as a viable therapeutic target. PMID:23097625

  3. 76 FR 69712 - Application To Export Electric Energy; BP Energy Company

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-09

    ... Application To Export Electric Energy; BP Energy Company AGENCY: Office of Electricity Delivery and Energy... its authority to transmit electric energy from the United States to Canada pursuant to section 202(e... (DOE) issued Order No. EA-315, which authorized BP Energy to transmit electric energy from the...

  4. 76 FR 69713 - Application To Export Electric Energy; BP Energy Company

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-09

    ... Application To Export Electric Energy; BP Energy Company AGENCY: Office of Electricity Delivery and Energy... its authority to transmit electric energy from the United States to Mexico pursuant to section 202(e... Order No. EA-314, which authorized BP Energy to transmit electric energy from the United States...

  5. TopBP1 deficiency impairs V(D)J recombination during lymphocyte development

    PubMed Central

    Kim, Jieun; Kyu Lee, Sung; Jeon, Yoon; Kim, Yehyun; Lee, Changjin; Ho Jeon, Sung; Shim, Jaegal; Kim, In-Hoo; Hong, Seokmann; Kim, Nayoung; Lee, Ho; Seong, Rho Hyun

    2014-01-01

    TopBP1 was initially identified as a topoisomerase II-β-binding protein and it plays roles in DNA replication and repair. We found that TopBP1 is expressed at high levels in lymphoid tissues and is essential for early lymphocyte development. Specific abrogation of TopBP1 expression resulted in transitional blocks during early lymphocyte development. These defects were, in major part, due to aberrant V(D)J rearrangements in pro-B cells, double-negative and double-positive thymocytes. We also show that TopBP1 was located at sites of V(D)J rearrangement. In TopBP1-deficient cells, γ-H2AX foci were found to be increased. In addition, greater amount of γ-H2AX product was precipitated from the regions where TopBP1 was localized than from controls, indicating that TopBP1 deficiency results in inefficient DNA double-strand break repair. The developmental defects were rescued by introducing functional TCR αβ transgenes. Our data demonstrate a novel role for TopBP1 as a crucial factor in V(D)J rearrangement during the development of B, T and iNKT cells. PMID:24442639

  6. 78 FR 53137 - Flint Hills Resources Alaska, LLC, BP Pipelines (Alaska) Inc., ConocoPhillips Transportation...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-28

    ... formal complaint against BP Pipelines (Alaska) Inc., ConocoPhillips Transportation Alaska, Inc., and... Energy Regulatory Commission Flint Hills Resources Alaska, LLC, BP Pipelines (Alaska) Inc., ConocoPhillips Transportation Alaska, Inc., ExxonMobil Pipeline Company; Notice of Complaint Take notice that...

  7. 53BP1 foci as a marker of tumor cell radiosensitivity.

    PubMed

    Markova, E; Vasilyev, S; Belyaev, I

    2015-01-01

    Predicting tumor radiosensitivity has yet to be routinely integrated into radiotherapy. We analyzed the possibility to assess radiosensitivity of tumor cells based on endogenous and radiation-induced 53BP1 foci which are molecular markers of DNA double strand breaks (DSB). In eleven tumor cell lines of different origin, radiosensitivity was assessed by surviving cell fraction following irradiation with 2 Gy (SF2). 53BP1 foci were measured at 4 and 12 h post-irradiation by confocal laser microscopy and dedicated software. The correlation of 53BP1 foci and their post-irradiation kinetics with SF2 was assessed using Spearman rank test. The SF2 correlated with both excess of radiation-induced 53BP1 foci per cell at 4 h after irradiation and decay in number of 53BP1 foci from 4 to 12 h post-irradiation. The fraction of cells with multiple endogenous 53BP1 foci also correlated with SF2 of tumor cells. We conclude that the radiosensitivity of tumor cells can be predicted by kinetics of formation and decay of 53BP1 foci after irradiation. For the first time we report that the fraction of cells with multiple endogenous 53BP1 foci can be used as a marker of tumor cell radiosensitivity. PMID:26278144

  8. Overexpressed CacyBP/SIP leads to the suppression of growth in renal cell carcinoma

    SciTech Connect

    Sun, Shiren; Ning, Xiaoxuan; Liu, Jie; Liu, Lili; Chen, Yu; Han, Shuang; Zhang, Yanqi; Liang, Jie; Wu, Kaichun; Fan, Daiming . E-mail: fandaim@fmmu.edu.cn

    2007-05-18

    Calcyclin-binding protein/Siah-1-interacting protein (CacyBP/SIP), a target protein of S100, has been identified as a component of a novel ubiquitinylation complex leading to {beta}-catenin degradation, which was found to be related to the malignant phenotypes of gastric cancer. However, the roles of CacyBP/SIP in renal cell carcinoma still remain unclear. In the present study, we had analyzed the expression of the CacyBP/SIP protein in human renal cancer cells and clinical tissue samples. The possible roles of CacyBP/SIP in regulating the malignant phenotype of renal cancer cells were also investigated. The results demonstrated that the expression of CacyBP/SIP was markedly down-regulated in renal cell carcinoma tissues and cell lines. Ectopic overexpression of CacyBP/SIP in A498 cells inhibited the proliferation of this cell and delayed cell cycle progression significantly, which might be related to the down-regulation of Cyclin D1 through reducing {beta}-catenin protein. CacyBP/SIP also suppressed colony formation in soft agar and its tumorigenicity in nude mice. Taken together, our work showed that CacyBP/SIP, as a novel down-regulated gene in renal cell carcinoma, suppressed proliferation and tumorigenesis of renal cancer cells.

  9. 75 FR 65309 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-22

    ..., and mitigate the impact of, any oil spills associated with offshore drilling in the future. The... National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling AGENCY: Department of... meeting of the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling...

  10. 75 FR 37783 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-30

    ... spill and develop options to guard against, and mitigate the impact of, any oil spills associated with... National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling AGENCY: Department of... meeting of the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling...

  11. 75 FR 47584 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-06

    ..., and mitigate the impact of, any oil spills associated with offshore drilling in the future. The... National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling AGENCY: Department of... meeting for the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling...

  12. 75 FR 39518 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling; Correction

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-09

    ..., 2010, of the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling, (75 FR... National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling; Correction AGENCY: Office...: Christopher A. Smith, (202) 586-0716. Corrections In the Federal Register of June 30, 2010, in FR Doc....

  13. 75 FR 68607 - BP Canada Energy Marketing Corp. Apache Corporation; Notice for Temporary Waivers

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-08

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission BP Canada Energy Marketing Corp. Apache Corporation; Notice for Temporary Waivers November 1, 2010. Take notice that on October 29, 2010, BP Canada Energy Marketing Corp....

  14. E4BP4: an unexpected player in the immune response.

    PubMed

    Male, Victoria; Nisoli, Ilaria; Gascoyne, Duncan M; Brady, Hugh J M

    2012-02-01

    Until recently, the basic leucine zipper transcription factor E4BP4 (also known as NFIL3) was of little interest to immunologists, being best known for its role in regulating circadian rhythm in chick pineal gland. However, characterisation of E4bp4(-/-) mice, independently generated in four different laboratories, has revealed roles for E4BP4 in diverse haematopoietic lineages. E4BP4 is essential for the development of NK cells and CD8α(+) conventional dendritic cells, and is also involved in macrophage activation, polarisation of CD4(+) T cell responses and B cell class switching to IgE. Here, we discuss the role of E4BP4 as a regulator of the immune response and highlight future questions for the field. PMID:22075207

  15. The adaptor 3BP2 is required for KIT receptor expression and human mast cell survival

    PubMed Central

    Ainsua-Enrich, Erola; Serrano-Candelas, Eva; Álvarez-Errico, Damiana; Picado, César; Sayós, Joan; Rivera, Juan; Martín, Margarita

    2015-01-01

    3BP2 is a cytoplasmic adaptor protein that acts as a positive regulator in mast cell FcεRI-dependent signaling. The KIT receptor whose ligand is the stem cell factor (SCF) is necessary for mast cell development, proliferation and survival as well as for optimal IgE-dependent signal. Activating mutations in KIT have been associated with several diseases including mastocytosis. In the present work, we found that 3BP2 silencing impairs KIT signaling pathways, thus affecting PI3K and MAP kinase pathways in human mast cells from HMC-1, LAD2 (human mast cell lines) and CD34+-derived mast cells. Unexpectedly, silencing of 3BP2 reduces KIT expression in normal human mast cells as well as in HMC-1 cells where KIT is mutated, thus increasing cellular apoptosis and caspase 3/7 activity. 3BP2 silencing reduces KIT transcription expression levels. Interestingly, 3BP2 silencing decreased MITF expression, a transcription factor involved in KIT expression. Reconstitution of 3BP2 in knockdown cells leads to reversal of KIT expression as well as survival phenotype. Accordingly MITF reconstitution enhances KIT expression levels in 3BP2 silenced cells. Moreover, downregulation of KIT expression by miRNA221 overexpression or the proteasome inhibitor bortezomib also reduced 3BP2 and MITF expression. Furthermore, KIT tyrosine activity inhibition reduced 3BP2 and MITF expression, demonstrating again a tight and reciprocal relationship between these molecules. Taken together, our results show that 3BP2 regulates human mast cell survival and participates in KIT-mediated signal transduction by directly controlling KIT receptor expression, suggesting its potential as a therapeutic target in mast cell-mediated inflammatory diseases and deregulated KIT disorders. PMID:25810396

  16. RanBP9 at the intersection between cofilin and Aβ pathologies: rescue of neurodegenerative changes by RanBP9 reduction

    PubMed Central

    Woo, J A; Boggess, T; Uhlar, C; Wang, X; Khan, H; Cappos, G; Joly-Amado, A; De Narvaez, E; Majid, S; Minamide, L S; Bamburg, J R; Morgan, D; Weeber, E; Kang, D E

    2015-01-01

    Molecular pathways underlying the neurotoxicity and production of amyloid β protein (Aβ) represent potentially promising therapeutic targets for Alzheimer's disease (AD). We recently found that overexpression of the scaffolding protein RanBP9 increases Aβ production in cell lines and in transgenic mice while promoting cofilin activation and mitochondrial dysfunction. Translocation of cofilin to mitochondria and induction of cofilin–actin pathology require the activation/dephosphorylation of cofilin by Slingshot homolog 1 (SSH1) and cysteine oxidation of cofilin. In this study, we found that endogenous RanBP9 positively regulates SSH1 levels and mediates Aβ-induced translocation of cofilin to mitochondria and induction of cofilin–actin pathology in cultured cells, primary neurons, and in vivo. Endogenous level of RanBP9 was also required for Aβ-induced collapse of growth cones in immature neurons (days in vitro 9 (DIV9)) and depletion of synaptic proteins in mature neurons (DIV21). In vivo, amyloid precursor protein (APP)/presenilin-1 (PS1) mice exhibited 3.5-fold increased RanBP9 levels, and RanBP9 reduction protected against cofilin–actin pathology, synaptic damage, gliosis, and Aβ accumulation associated with APP/PS1 mice. Brains slices derived from APP/PS1 mice showed significantly impaired long-term potentiation (LTP), and RanBP9 reduction significantly enhanced paired pulse facilitation and LTP, as well as partially rescued contextual memory deficits associated with APP/PS1 mice. Therefore, these results underscore the critical importance of endogenous RanBP9 not only in Aβ accumulation but also in mediating the neurotoxic actions of Aβ at the level of synaptic plasticity, mitochondria, and cofilin–actin pathology via control of the SSH1-cofilin pathway in vivo. PMID:25741591

  17. Oncofetal protein IGF2BP3 facilitates the activity of proto-oncogene protein eIF4E through the destabilization of EIF4E-BP2 mRNA.

    PubMed

    Mizutani, R; Imamachi, N; Suzuki, Y; Yoshida, H; Tochigi, N; Oonishi, T; Suzuki, Y; Akimitsu, N

    2016-07-01

    RNA-binding proteins (RBPs) have important roles in tumorigenesis. Although IGF2BP3, an evolutionally conserved RBP, has been reported as a useful diagnostic marker for various cancers and has been considered a regulator of tumorigenesis, little is known of the function of IGF2BP3 because of lack of information regarding IGF2BP3 target mRNAs. Here, we report the identification of IGF2BP3 target mRNAs and IGF2BP3 function in cancer proliferation. We identified mRNAs with altered expression in IGF2BP3-depleted cells by massive sequencing analysis and IGF2BP3-binding RNAs by immunoprecipitation of IGF2BP3 followed by massive sequencing analysis, resulting in the identification of 110 candidates that are negatively regulated by IGF2BP3. We found that IGF2BP3 destabilized EIF4E-BP2 and MEIS3 mRNAs. Co-immunoprecipitation analysis revealed the interaction between IGF2BP3 and ribonucleases such as XRN2 and exosome component. The retarded proliferation of IGF2BP3-depleted cells was partially rescued by the depletion of EIF4E-BP2, which negatively regulates eukaryotic translation initiation factor 4E (eIF4E), an activator of translation and a well-known proto-oncogene. Consistent with this observation, IGF2BP3 depletion reduced phosphorylated eIF4E, the active form, and translational efficiency of eIF4E target transcripts. Reduction of phosphorylated eIF4E by IGF2BP3 depletion was rescued by EIF4E-BP2 depletion. At last, we found an inverse correlation between the expression level of IGF2BP3 and EIF4E-BP2 in human lung adenocarcinoma tissues. Together, these results suggest that IGF2BP3 promotes eIF4E-mediated translational activation through the reduction of EIF4E-BP2 via mRNA degradation, leading to enhanced cell proliferation. This is the first report demonstrating that IGF2BP3 is an RNA-destabilizing factor. Notably, here we provide the first evidence for the functional linkage between two previously well-known cancer biomarkers, IGF2BP3 and eIF4E. PMID:26522719

  18. CacyBP/SIP nuclear translocation regulates p27Kip1 stability in gastric cancer cells

    PubMed Central

    Niu, Ying-Lin; Li, Ya-Jun; Wang, Jing-Bo; Lu, Yuan-Yuan; Liu, Zhen-Xiong; Feng, Shan-Shan; Hu, Jian-Guo; Zhai, Hui-Hong

    2016-01-01

    AIM: To investigate the mechanism of calcyclin binding protein/Siah-1 interacting protein (CacyBP/SIP) nuclear translocation in promoting the proliferation of gastric cancer (GC) cells. METHODS: The effect of CacyBP/SIP nuclear translocation on cell cycle was investigated by cell cycle analysis. Western blot analysis was used to assess the change in expression of cell cycle regulatory proteins and proteasome-mediated degradation of p27Kip1. Co-immunoprecipitation (co-IP) analysis was performed to examine the binding of CacyBP/SIP with Skp1. A CacyBP/SIP truncation mutant which lacked the Skp1 binding site was constructed and fused to a fluorescent protein. Subsequently, the effect on Skp1 binding with the fusion protein was examined by co-IP, while localization of fluorescent fusion protein observed by confocal laser microscopy, and change in p27Kip1 protein expression assessed by Western blot analysis. RESULTS: CacyBP/SIP nuclear translocation induced by gastrin promoted progression of GC cells from G1 phase. However, while CacyBP/SIP nuclear translocation was inhibited using siRNA to suppress CacyBP/SIP expression, cell cycle was clearly inhibited. CacyBP/SIP nuclear translocation significantly decreased the level of cell cycle inhibitor p27Kip1, increased Cyclin E protein expression whereas the levels of Skp1, Skp2, and CDK2 were not affected. Upon inhibition of CacyBP/SIP nuclear translocation, there were no changes in protein levels of p27Kip1 and Cyclin E, while p27Kip1 decrease could be prevented by the proteasome inhibitor MG132. Moreover, CacyBP/SIP was found to bind to Skp1 by immunoprecipitation, an event that was abolished by mutant CacyBP/SIP, which also failed to stimulate p27Kip1 degradation, even though the mutant could still translocate into the nucleus. CONCLUSION: CacyBP/SIP nuclear translocation contributes to the proliferation of GC cells, and CacyBP/SIP exerts this effect, at least in part, by stimulating ubiquitin-mediated degradation of p27

  19. Characterization of a cancer cell line that expresses a splicing variant form of 53BP1: Separation of checkpoint and repair functions in 53BP1

    SciTech Connect

    Iwabuchi, Kuniyoshi Matsui, Tadashi; Hashimoto, Mitsumasa; Matsumoto, Yoshihisa; Kurihara, Takayuki; Date, Takayasu

    2008-11-21

    53BP1 plays important roles in checkpoint signaling and repair for DNA double-strand breaks. We found that a colon cancer cell line, SW48, expressed a splicing variant form of 53BP1, which lacks the residues corresponding to exons 10 and 11. Activation of ATM and phosphorylation of ATM and ATR targets occurred in SW48 cells in response to X-irradiation, and these X-ray-induced responses were not enhanced by expression of full-length 53BP1 in SW48 cells, indicating that this splicing variant fully activates the major checkpoint signaling in SW48 cells. In contrast, the expression of full-length 53BP1 in SW48 cells promoted the repair of X-ray-induced DNA damage, evidenced by faster disappearance of X-ray-induced {gamma}-H2AX foci, a marker for DNA damage, and less residual chromosomal aberrations after X-irradiation. We conclude that the two major roles of 53BP1, the checkpoint signaling and repair for DNA damage, can be functionally separated.

  20. Subepidermal Blistering Induced by Human Autoantibodies to BP180 Requires Innate Immune Players in a Humanized Bullous Pemphigoid Mouse Model

    PubMed Central

    Liu, Zhi; Sui, Wen; Zhao, Minglang; Li, Zhuowei; Li, Ning; Thresher, Randy; Giudice, George J.; Fairley, Janet A.; Sitaru, Cassian; Zillikens, Detlef; Ning, Gang; Marinkovich, Peter; Diaz, Luis A.

    2008-01-01

    Bullous pemphigoid (BP) is a cutaneous autoimmune inflammatory disease associated with subepidermal blistering and autoantibodies against BP180, a transmembrane collagen and major component of the hemidesmosome. Numerous inflammatory cells infiltrate the upper dermis in BP. IgG autoantibodies in BP fix complement and target multiple BP180 epitopes that are highly clustered within a non-collagen linker domain, termed NC16A. Anti-BP180 antibodies induce BP in mice. In this study, we generated a humanized mouse strain, in which the murine BP180NC14A is replaced with the homologous human BP180NC16A epitope cluster region. We show that the humanized NC16A (NC16A+/+) mice injected with anti-BP180NC16A autoantibodies develop BP-like subepidermal blisters. The F(ab′)2 fragments of pathogenic IgG fail to activate complement cascade and are no longer pathogenic. The NC16A+/+ mice pretreated with mast cell activation blocker or depleting of complement or neutrophils become resistant to BP. These findings suggest that the humoral response in BP critically depends on innate immune system players. PMID:18922680

  1. Speed and Magnitude of Abrupt Climate Change at 8,200 yrs B.P. from the Greenland Ice Core (GISP2)

    NASA Astrophysics Data System (ADS)

    Kobashi, T.; Severinghaus, J. P.; Brook, E. J.; Grachev, A.

    2003-12-01

    At ˜8,200 years before present, an abrupt climate change occurred, which is believed to be the largest in the past 10,000 years. The scale of the event was probably global, as seen in reduced atmospheric methane concentration and paleoclimatic evidence around the globe indicating drying and cooling trends. The timing of the climate change also coincides with widespread abandonment of villages in southwestern Asia, which marks the end of the Pre-Pottery Neolithic B (PPNB) interval. Owing to the similarity between the warm early-Holocene and the projected warmer future climate, the 8.2 k event provides us an invaluable test case for a future potential abrupt climate change. We reconstructed the speed and magnitude of temperature change at the event, using argon and nitrogen isotopes in trapped air from the Greenland ice core coupled with the oxygen isotope record of ice. This method makes use of two isotopic fractionations, gravitational and thermal, which occur within the firn layer (snow layer above the air bubble close-off depth). The analyses of argon and nitrogen isotopes can separate the two effects, and allows us to directly retrieve temperature information (Severinghaus et al., Nature, v. 391, 141, 1998). The magnitude of temperature change in central Greenland at 8.2kyr B.P. is preliminarily estimated to be 5 +/- 2 ° C for the decadal average with the experimentally determined thermal diffusion constants (Grachev and Severinghaus, Geochim. et Cosmochim. Acta, v.67, 345, 2003; J. Phys. Chem., v.107, 4636, 2003), implying an oxygen isotope-temperature coefficient, α , of ˜0.4 permil/° C. Using oxygen isotope record of ice and α , we estimate that the abrupt cooling took place within ˜5 years with an 'instantaneous' magnitude of ˜8° C, and climate was locked in the cold phase for ˜60 years. In addition, we plan to measure methane concentration in trapped air, which will constrain the mechanisms of the abrupt climate change.

  2. Establishing a Dynamic Self-Adaptation Learning Algorithm of the BP Neural Network and Its Applications

    NASA Astrophysics Data System (ADS)

    Li, Xiaofeng; Xiang, Suying; Zhu, Pengfei; Wu, Min

    2015-12-01

    In order to avoid the inherent deficiencies of the traditional BP neural network, such as slow convergence speed, that easily leading to local minima, poor generalization ability and difficulty in determining the network structure, the dynamic self-adaptive learning algorithm of the BP neural network is put forward to improve the function of the BP neural network. The new algorithm combines the merit of principal component analysis, particle swarm optimization, correlation analysis and self-adaptive model, hence can effectively solve the problems of selecting structural parameters, initial connection weights and thresholds and learning rates of the BP neural network. This new algorithm not only reduces the human intervention, optimizes the topological structures of BP neural networks and improves the network generalization ability, but also accelerates the convergence speed of a network, avoids trapping into local minima, and enhances network adaptation ability and prediction ability. The dynamic self-adaptive learning algorithm of the BP neural network is used to forecast the total retail sale of consumer goods of Sichuan Province, China. Empirical results indicate that the new algorithm is superior to the traditional BP network algorithm in predicting accuracy and time consumption, which shows the feasibility and effectiveness of the new algorithm.

  3. YB-1 regulates stress granule formation and tumor progression by translationally activating G3BP1

    PubMed Central

    Somasekharan, Syam Prakash; El-Naggar, Amal; Leprivier, Gabriel; Cheng, Hongwei; Hajee, Shamil; Grunewald, Thomas G.P.; Zhang, Fan; Ng, Tony; Delattre, Olivier; Evdokimova, Valentina; Wang, Yuzhuo; Gleave, Martin

    2015-01-01

    Under cell stress, global protein synthesis is inhibited to preserve energy. One mechanism is to sequester and silence mRNAs in ribonucleoprotein complexes known as stress granules (SGs), which contain translationally silent mRNAs, preinitiation factors, and RNA-binding proteins. Y-box binding protein 1 (YB-1) localizes to SGs, but its role in SG biology is unknown. We now report that YB-1 directly binds to and translationally activates the 5′ untranslated region (UTR) of G3BP1 mRNAs, thereby controlling the availability of the G3BP1 SG nucleator for SG assembly. YB-1 inactivation in human sarcoma cells dramatically reduces G3BP1 and SG formation in vitro. YB-1 and G3BP1 expression are highly correlated in human sarcomas, and elevated G3BP1 expression correlates with poor survival. Finally, G3BP1 down-regulation in sarcoma xenografts prevents in vivo SG formation and tumor invasion, and completely blocks lung metastasis in mouse models. Together, these findings demonstrate a critical role for YB-1 in SG formation through translational activation of G3BP1, and highlight novel functions for SGs in tumor progression. PMID:25800057

  4. Cell cycle-dependent inhibition of 53BP1 signaling by BRCA1

    PubMed Central

    Feng, Lin; Li, Nan; Li, Yujing; Wang, Jiadong; Gao, Min; Wang, Wenqi; Chen, Junjie

    2015-01-01

    DNA damage response mediator protein 53BP1 is a key regulator of non-homologous end-joining (NHEJ) repair. 53BP1 protects DNA broken ends from resection by recruiting two downstream factors, RIF1 (RAP1-interacting factor 1) and PTIP (Pax transactivation domain-interacting protein), to double-stranded breaks (DSBs) via ATM (ataxia telangiectasia mutated)-mediated 53BP1 phosphorylation, and competes with BRCA1-mediated homologous recombination (HR) repair in G1 phase. In contrast, BRCA1 antagonizes 53BP1-direct NHEJ repair in S/G2 phases. We and others have found that BRCA1 prevents the translocation of RIF1 to DSBs in S/G2 phases; however, the underlying mechanism remains unclear. Here we show that efficient ATM-dependent 53BP1 phosphorylation is restricted to the G1 phase of the cell cycle, as a consequence RIF1 and PTIP accumulation at DSB sites only occur in G1 phase. Mechanistically, both BRCT and RING domains of BRCA1 are required for the inhibition of 53BP1 phosphorylation in S and G2 phases. Thus, our findings reveal how BRCA1 antagonizes 53BP1 signaling to ensure that HR repair is the dominant repair pathway in S/G2 phases.

  5. CENP-C facilitates the recruitment of M18BP1 to centromeric chromatin.

    PubMed

    Dambacher, Silvia; Deng, Wen; Hahn, Matthias; Sadic, Dennis; Fröhlich, Jonathan; Nuber, Alexander; Hoischen, Christian; Diekmann, Stephan; Leonhardt, Heinrich; Schotta, Gunnar

    2012-01-01

    Centromeres are important structural constituents of chromosomes that ensure proper chromosome segregation during mitosis by providing defined sites for kinetochore attachment. In higher eukaryotes, centromeres have no specific DNA sequence and thus, they are rather determined through epigenetic mechanisms. A fundamental process in centromere establishment is the incorporation of the histone variant CENP-A into centromeric chromatin, which provides a binding platform for the other centromeric proteins. The Mis18 complex, and, in particular, its member M18BP1 was shown to be essential for both incorporation and maintenance of CENP-A. Here we show that M18BP1 displays a cell cycle-regulated association with centromeric chromatin in mouse embryonic stem cells. M18BP1 is highly enriched at centromeric regions from late anaphase through to G1 phase. An interaction screen against 16 core centromeric proteins revealed a novel interaction of M18BP1 with CENP-C. We mapped the interaction domain in M18BP1 to a central region containing a conserved SANT domain and in CENP-C to the C-terminus. Knock-down of CENP-C leads to reduced M18BP1 association and lower CENP-A levels at centromeres, suggesting that CENP-C works as an important factor for centromeric M18BP1 recruitment and thus for maintaining centromeric CENP-A. PMID:22540025

  6. CENP-C facilitates the recruitment of M18BP1 to centromeric chromatin

    PubMed Central

    Dambacher, Silvia; Deng, Wen; Hahn, Matthias; Sadic, Dennis; Fröhlich, Jonathan; Nuber, Alexander; Hoischen, Christian; Diekmann, Stephan; Leonhardt, Heinrich; Schotta, Gunnar

    2012-01-01

    Centromeres are important structural constituents of chromosomes that ensure proper chromosome segregation during mitosis by providing defined sites for kinetochore attachment. In higher eukaryotes, centromeres have no specific DNA sequence and thus, they are rather determined through epigenetic mechanisms. A fundamental process in centromere establishment is the incorporation of the histone variant CENP-A into centromeric chromatin, which provides a binding platform for the other centromeric proteins. The Mis18 complex, and, in particular, its member M18BP1 was shown to be essential for both incorporation and maintenance of CENP-A.   Here we show that M18BP1 displays a cell cycle-regulated association with centromeric chromatin in mouse embryonic stem cells. M18BP1 is highly enriched at centromeric regions from late anaphase through to G1 phase. An interaction screen against 16 core centromeric proteins revealed a novel interaction of M18BP1 with CENP-C. We mapped the interaction domain in M18BP1 to a central region containing a conserved SANT domain and in CENP-C to the C-terminus. Knock-down of CENP-C leads to reduced M18BP1 association and lower CENP-A levels at centromeres, suggesting that CENP-C works as an important factor for centromeric M18BP1 recruitment and thus for maintaining centromeric CENP-A. PMID:22540025

  7. Divergent homologs of the predicted small RNA BpCand697 in Burkholderia spp.

    NASA Astrophysics Data System (ADS)

    Damiri, Nadzirah; Mohd-Padil, Hirzahida; Firdaus-Raih, Mohd

    2015-09-01

    The small RNA (sRNA) gene candidate, BpCand697 was previously reported to be unique to Burkholderia spp. and is encoded at 3' non-coding region of a putative AraC family transcription regulator gene. This study demonstrates the conservation of BpCand697 sequence across 32 Burkholderia spp. including B. pseudomallei, B. mallei, B. thailandensis and Burkholderia sp. by integrating both sequence homology and secondary structural analyses of BpCand697 within the dataset. The divergent sequence of BpCand697 was also used as a discriminatory power in clustering the dataset according to the potential virulence of Burkholderia spp., showing that B. thailandensis was clearly secluded from the virulent cluster of B. pseudomallei and B. mallei. Finally, the differential co-transcript expression of BpCand697 and its flanking gene, bpsl2391 was detected in Burkholderia pseudomallei D286 after grown under two different culture conditions using nutrient-rich and minimal media. It is hypothesized that the differential expression of BpCand697-bpsl2391 co-transcript between the two standard prepared media might correlate with nutrient availability in the culture media, suggesting that the physical co-localization of BpCand697 in B. pseudomallei D286 might be directly or indirectly involved with the transcript regulation of bpsl2391 under the selected in vitro culture conditions.

  8. Levels of the E2 interacting protein TopBP1 modulate papillomavirus maintenance stage replication.

    PubMed

    Kanginakudru, Sriramana; DeSmet, Marsha; Thomas, Yanique; Morgan, Iain M; Androphy, Elliot J

    2015-04-01

    The evolutionarily conserved DNA topoisomerase II beta-binding protein 1 (TopBP1) functions in DNA replication, DNA damage response, and cell survival. We analyzed the role of TopBP1 in human and bovine papillomavirus genome replication. Consistent with prior reports, TopBP1 co-localized in discrete nuclear foci and was in complex with papillomavirus E2 protein. Similar to E2, TopBP1 is recruited to the region of the viral origin of replication during G1/S and early S phase. TopBP1 knockdown increased, while over-expression decreased transient virus replication, without affecting cell cycle. Similarly, using cell lines harboring HPV-16 or HPV-31 genome, TopBP1 knockdown increased while over-expression reduced viral copy number relative to genomic DNA. We propose a model in which TopBP1 serves dual roles in viral replication: it is essential for initiation of replication yet it restricts viral copy number. PMID:25666521

  9. M2BP inhibits HIV-1 virion production in a vimentin filaments-dependent manner

    PubMed Central

    Wang, Qin; Zhang, Xiaolin; Han, Yuling; Wang, Xinlu; Gao, Guangxia

    2016-01-01

    M2BP (also called 90K) is an interferon-stimulated gene product that is upregulated in HIV-1 infection. A recent study revealed that M2BP reduces the infectivity of HIV-1 by inhibiting the processing of the viral envelope protein. Here we report that in addition to reducing viral infectivity, M2BP inhibits HIV-1 virion production. We provide evidence showing that M2BP inhibits HIV-1 Gag trafficking to the plasma membrane in a vimentin-dependent manner. When vimentin filaments were collapsed by treating cells with acrylamide or by overexpression of a dominant-negative mutant of vimentin, M2BP inhibition of HIV-1 virion production was significantly relieved. We further show that M2BP interacts with both HIV-1 Gag and vimentin and thereby mediates their interactions. We propose that M2BP traps HIV-1 Gag to vimentin filaments to inhibit the transportation of HIV-1 Gag to the plasma membrane. These findings uncover a novel mechanism by which a host antiviral factor inhibits HIV-1 virion production. PMID:27604950

  10. M2BP inhibits HIV-1 virion production in a vimentin filaments-dependent manner.

    PubMed

    Wang, Qin; Zhang, Xiaolin; Han, Yuling; Wang, Xinlu; Gao, Guangxia

    2016-01-01

    M2BP (also called 90K) is an interferon-stimulated gene product that is upregulated in HIV-1 infection. A recent study revealed that M2BP reduces the infectivity of HIV-1 by inhibiting the processing of the viral envelope protein. Here we report that in addition to reducing viral infectivity, M2BP inhibits HIV-1 virion production. We provide evidence showing that M2BP inhibits HIV-1 Gag trafficking to the plasma membrane in a vimentin-dependent manner. When vimentin filaments were collapsed by treating cells with acrylamide or by overexpression of a dominant-negative mutant of vimentin, M2BP inhibition of HIV-1 virion production was significantly relieved. We further show that M2BP interacts with both HIV-1 Gag and vimentin and thereby mediates their interactions. We propose that M2BP traps HIV-1 Gag to vimentin filaments to inhibit the transportation of HIV-1 Gag to the plasma membrane. These findings uncover a novel mechanism by which a host antiviral factor inhibits HIV-1 virion production. PMID:27604950

  11. E4BP4 overexpression: a protective mechanism in CD4+ T cells from SLE patients.

    PubMed

    Zhao, Ming; Liu, Qian; Liang, Gongping; Wang, Litao; Luo, Shuangyan; Tang, Qian; Zhao, Hongjun; Su, Yuwen; Yung, Susan; Chan, Tak Mao; Lu, Qianjin

    2013-03-01

    Systemic lupus erythematosus (SLE) is a prototype autoimmune disease characterized by various immunological abnormalities, including dysregulated activation of T and B lymphocytes, which trigger autoantibody production and immune-complex deposition. E4BP4, also known as NFIL3, has emerged as a major transcription factor that regulates the development and function of immune cells in a number of lineages. E4BP4 has been shown to regulate cytokines expression, and its synthesis is in turn controlled by various cytokines. To date, the roles of E4BP4 in immune dysregulation and autoimmune disorders are unclear. In this study, we demonstrated that E4BP4 expression is increased in CD4(+) T cells isolated from patients with active systemic lupus erythematosus (SLE), especially in patients treated with glucocorticoid (GC). Increased expression of E4BP4 inhibited the activation and self-reactivity of T cells stimulated by anti-CD3/CD28 antibodies. In contrast, the self-reactivity was enhanced in CD4(+) T cells from SLE patients following E4BP4 gene silencing and the production of autoantibody was increased in autologous B cells. We further demonstrated that E4BP4 directly regulated CD40L expression by binding to the promoter region and altering histone acetylation and methylation of the CD40L loci. Taken together, our data provide evidence that E4BP4 can inhibit CD40L expression through epigenetic modifications in the promoter region of CD40L, thus negatively regulating self-reactivity of SLE CD4(+) T cells. Furthermore, our data demonstrate that overexpression of E4BP4 initiates a protective mechanism in SLE CD4(+) T cells, which may be a promising target in the therapy for SLE. PMID:23340290

  12. Mutation particle swarm optimization of the BP-PID controller for piezoelectric ceramics

    NASA Astrophysics Data System (ADS)

    Zheng, Huaqing; Jiang, Minlan

    2016-01-01

    PID control is the most common used method in industrial control because its structure is simple and it is easy to implement. PID controller has good control effect, now it has been widely used. However, PID method has a few limitations. The overshoot of the PID controller is very big. The adjustment time is long. When the parameters of controlled plant are changing over time, the parameters of controller could hardly change automatically to adjust to changing environment. Thus, it can't meet the demand of control quality in the process of controlling piezoelectric ceramic. In order to effectively control the piezoelectric ceramic and improve the control accuracy, this paper replaced the learning algorithm of the BP with the mutation particle swarm optimization algorithm(MPSO) on the process of the parameters setting of BP-PID. That designed a better self-adaptive controller which is combing the BP neural network based on mutation particle swarm optimization with the conventional PID control theory. This combination is called the MPSO-BP-PID. In the mechanism of the MPSO, the mutation operation is carried out with the fitness variance and the global best fitness value as the standard. That can overcome the precocious of the PSO and strengthen its global search ability. As a result, the MPSO-BP-PID can complete controlling the controlled plant with higher speed and accuracy. Therefore, the MPSO-BP-PID is applied to the piezoelectric ceramic. It can effectively overcome the hysteresis, nonlinearity of the piezoelectric ceramic. In the experiment, compared with BP-PID and PSO-BP-PID, it proved that MPSO is effective and the MPSO-BP-PID has stronger adaptability and robustness.

  13. Change in the Nd isotopic composition of the bottom water and detrital sediments on the Bering Slope over the last 500 kyrs with implications for the formation of the North Pacific Intermediate Water

    NASA Astrophysics Data System (ADS)

    Jang, K.; Huh, Y.; Han, Y.

    2015-12-01

    The Bering Sea is a potential location for the formation of the North Pacific Intermediate/Deep Water (NPIW/NPDW) and may play an important role in the global heat distribution. We reconstructed the neodymium isotopic ratio (ɛNd) of authigenic Fe-Mn oxide coatings and detrital sediments on the Bering Slope (IODP Expedition 323 site U1345; water depth 1008 m) over the last 500 kyrs. The ɛNd is a quasi-conservative water mass tracer. We compared three different leaching techniques to assure that authigenic signals are captured without contamination from terrigenous sources: (1) leaching (3 hours) with 0.02 M hydroxylamine hydrochloride (HH) in 25% buffered acetic acid after decarbonation; sediment/solution (v/v) > 10, (2) leaching (1 hour) with 0.02 M HH in 25% buffered acetic acid without decarbonation; sediment/solution ~ 1, and (3) leaching (1 hour) with 0.005 M HH in 1.5% buffered acetic acid-0.003 M Na-EDTA without decarbonation; sediment/solution > 40. The low Al concentrations and less radiogenic ɛNdvalues indicated that method (2) is the most appropriate leaching process. The average ɛNd of the authigenic fraction over the last 500 kyrs is -3.3 ± 0.9 (1σ, n=38), with large temporal fluctuations. The ɛNd of authigenic and detrital fractions are well correlated (r2 ~ 0.66), suggesting that the bottom water composition in the Bering Sea was governed by terrigenous inflow from surrounding areas. Radiogenic ɛNd peaks (up to -1.9) seem to be influenced by radiogenic water inflow from the the Kamchatka or Aluetian arcs. The high bulk density and low b* values imply higher terrigenous versus biological contribution and enhanced sea ice formation. Subsequent brine formation would have triggered sinking of radiogenic surface water, forming the NPIW. On the other hand, non-radiogenic ɛNd troughs (down to -5.3) are observed at times of low bulk density and high b* values. We presume higher biological productivity which is supported by the high opal content at

  14. Two Isoforms of the RNA Binding Protein, Coding Region Determinant-binding Protein (CRD-BP/IGF2BP1), Are Expressed in Breast Epithelium and Support Clonogenic Growth of Breast Tumor Cells*

    PubMed Central

    Fakhraldeen, Saja A.; Clark, Rod J.; Roopra, Avtar; Chin, Emily N.; Huang, Wei; Castorino, John; Wisinski, Kari B.; Kim, TaeWon; Spiegelman, Vladimir S.; Alexander, Caroline M.

    2015-01-01

    CRD-BP/IGF2BP1 has been characterized as an “oncofetal” RNA binding protein typically highly expressed in embryonic tissues, suppressed in normal adult tissues, but induced in many tumor types. In this study, we show that adult breast tissues express ubiquitous but low levels of CRD-BP protein and mRNA. Although CRD-BP mRNA expression is induced in breast tumor cells, levels remain ∼1000-fold lower than in embryonic tissues. Despite low expression levels, CRD-BP is required for clonogenic growth of breast cancer cells. We reveal that because the most common protein isoform in normal adult breast and breast tumors has an N-terminal deletion (lacking two RNA recognition motif (RRM) domains) and is therefore missing antibody epitopes, CRD-BP expression has been under-reported by previous studies. We show that a CRD-BP mutant mouse strain retains expression of the shorter transcript (ΔN-CRD-BP), which originates in intron 2, suggesting that the impact of complete ablation of this gene in mice is not yet known. Either the full-length CRD-BP or the N-terminally truncated version can rescue the clonogenicity of CRD-BP knockdown breast cancer cells, suggesting that clonogenic function is served by either CRD-BP isoform. In summary, although CRD-BP expression levels are low in breast cancer cells, this protein is necessary for clonogenic activity. PMID:25861986

  15. Clinical and Immunological Studies of 332 Japanese Patients Tentatively Diagnosed as Anti-BP180-type Mucous Membrane Pemphigoid: A Novel BP180 C-terminal Domain Enzyme-linked Immunosorbent Assay.

    PubMed

    Yasukochi, Atsushi; Teye, Kwesi; Ishii, Norito; Hashimoto, Takashi

    2016-08-23

    Diagnosis of anti-BP180-type mucous membrane pemphigoid (BP180-MMP) is frustrated by the difficulty of detecting BP180 reactivity. A total of 721 patients with suspected MMP, selected from a cohort of 4,698 patients with autoimmune bullous disease (AIBD), were included in this study. Of these, 332 patients were tentatively diagnosed as BP180-MMP if they showed IgG/IgA reactivity with the epidermal side of 1M NaCl-split-skin and/or positive reactivity with BP180 in at least one of our antigen detection methods. Clinically, a predominance of female patients was found. Oral mucosal and cutaneous lesions were found in 85.5% and 41.0% of patients, respectively, and frequent treatments were systemic steroids, tetracycline/minocycline and diaminodiphenyl sulfone. Various immunological methods, including a newly developed BP180 C-terminal domain enzyme-linked immunosorbent assay (ELISA), revealed frequent reactivity with BP180 C-terminal and NC16a domains. Some patients reacted with BP180 and other antigens, indicating that BP180-MMP tends to concur with other AIBDs. This large study of patients with suspected BP180-MMP indicates the difficulty of diagnosis of BP180-MMP and the diagnostic usefulness of BP180 C-terminal domain ELISA. PMID:26984589

  16. Geoarchaeological evidence from Peru for a 5000 years B.P. onset of El Nino

    SciTech Connect

    Sandweiss, D.H.; Richardson, J.B. III; Rollins, H.B.

    1996-09-13

    For the tropical west coast of South America, where El Nino/Southern Oscillation (ENSO) is most pronounced, archaeological and associated paleontological deposits in northern Peru revealed a major climate change at about 5000 years before the present (yr B.P.). The data implied the presence of stable, warm tropical water as far south as 10{degrees}S during the early mid-Holocene (about 8000 to 5000 yr B.P.). These data suggest that ENSO did not occur for some millennia preceding 5000 yr B.P., when global and regional climate was warmer than today. 36 refs., 1 fig., 3 tabs.

  17. Genetic and morphological features of human iPSC-derived neurons with chromosome 15q11.2 (BP1-BP2) deletions

    PubMed Central

    Das, DK; Tapias, V; D’Aiuto, L; Chowdari, KV; Francis, L; Zhi, Y; Ghosh, Bhattacharjee A; Surti, U; Tischfield, J; Sheldon, M; Moore, JC; Fish, K; Nimgaonkar, V

    2015-01-01

    Background Copy number variation on chromosome 15q11.2 (BP1-BP2) causes deletion of CYFIP1, NIPA1, NIPA2 and TUBGCP5; it also affects brain structure and elevates risk for several neurodevelopmental disorders that are associated with dendritic spine abnormalities. In rodents, altered cyfip1 expression changes dendritic spine morphology, motivating analyses of human neuronal cells derived from iPSCs (iPSC-neurons). Methods iPSCs were generated from a mother and her offspring, both carrying the 15q11.2 (BP1-BP2) deletion, and a non-deletion control. Gene expression in the deletion region was estimated using quantitative real-time PCR assays. Neural progenitor cells (NPCs) and iPSC-neurons were characterized using immunocytochemistry. Results CYFIP1, NIPA1, NIPA2 and TUBGCP5 gene expression was lower in iPSCs, NPCs and iPSC-neurons from the mother and her offspring in relation to control cells. CYFIP1 and PSD95 protein levels were lower in iPSC-neurons derived from the CNV bearing individuals using Western blot analysis. At 10 weeks post-differentiation, iPSC-neurons appeared to show dendritic spines and qualitative analysis suggested that dendritic morphology was altered in 15q11.2 deletion subjects compared with control cells. Conclusions The 15q11.2 (BP1-BP2) deletion is associated with reduced expression of four genes in iPSC-derived neuronal cells; it may also be associated altered iPSC-neuron dendritic morphology. PMID:26528485

  18. Spatial climate dynamics in the Iberian Peninsula since 15 000 yr BP

    NASA Astrophysics Data System (ADS)

    Tarroso, Pedro; Carrión, José; Dorado-Valiño, Miriam; Queiroz, Paula; Santos, Luisa; Valdeolmillos-Rodríguez, Ana; Célio Alves, Paulo; Brito, José Carlos; Cheddadi, Rachid

    2016-05-01

    Climate changes in the Iberian Peninsula since the Last Glacial Maximum are associated with distributional shifts of major Mediterranean and European temperate species. The dynamic relationship between climate and species in the past may be retrieved from the fossil records available in the Iberian Peninsula. We have used an extensive set of pollen records to reconstruct spatial layers (1 kyr interval) of January minimum temperature, July maximum temperature, and annual precipitation over the time period between 15 and 3 ka. A functional principal component analysis was used to summarise the spatial evolution of climate in areas that share similar climate trends. When compared between them, the identified four areas show different climate trends over the studied period and are coherent with the existence of multiple refugial areas within the Iberian Peninsula.

  19. WS-BP: An efficient wolf search based back-propagation algorithm

    NASA Astrophysics Data System (ADS)

    Nawi, Nazri Mohd; Rehman, M. Z.; Khan, Abdullah

    2015-05-01

    Wolf Search (WS) is a heuristic based optimization algorithm. Inspired by the preying and survival capabilities of the wolves, this algorithm is highly capable to search large spaces in the candidate solutions. This paper investigates the use of WS algorithm in combination with back-propagation neural network (BPNN) algorithm to overcome the local minima problem and to improve convergence in gradient descent. The performance of the proposed Wolf Search based Back-Propagation (WS-BP) algorithm is compared with Artificial Bee Colony Back-Propagation (ABC-BP), Bat Based Back-Propagation (Bat-BP), and conventional BPNN algorithms. Specifically, OR and XOR datasets are used for training the network. The simulation results show that the WS-BP algorithm effectively avoids the local minima and converge to global minima.

  20. Identification and molecular characterization of BP75, a novel bromodomain-containing protein.

    PubMed

    Cuppen, E; van Ham, M; Pepers, B; Wieringa, B; Hendriks, W

    1999-10-15

    We here describe the identification and characterization of a novel bromodomain-containing protein, the bromodomain protein of 75 kDa (BP75). Initially, we identified BP75 in a two-hybrid screening for proteins that interact with the first PDZ (acronym for post-synaptic density protein PSD-95, Drosophila discs large tumor suppressor DlgA and the tight junction protein ZO-1) domain in protein tyrosine phosphatase-BAS-like (PTP-BL). We found that BP75 is expressed ubiquitously and show that both BP75 and a PTP-BL deletion mutant consisting of the first PDZ domain are located mainly in the nucleus, although cytoplasmic localization is also evident. Full-length PTP-BL, on the contrary, is predominantly localized in the cytoplasm, although some basal nuclear staining is observed. The described molecular interaction may reflect a mechanism of coupling submembraneous signalling events and nuclear events. PMID:10526152

  1. Prediction of BP reactivity to talking using hybrid soft computing approaches.

    PubMed

    Kaur, Gurmanik; Arora, Ajat Shatru; Jain, Vijender Kumar

    2014-01-01

    High blood pressure (BP) is associated with an increased risk of cardiovascular diseases. Therefore, optimal precision in measurement of BP is appropriate in clinical and research studies. In this work, anthropometric characteristics including age, height, weight, body mass index (BMI), and arm circumference (AC) were used as independent predictor variables for the prediction of BP reactivity to talking. Principal component analysis (PCA) was fused with artificial neural network (ANN), adaptive neurofuzzy inference system (ANFIS), and least square-support vector machine (LS-SVM) model to remove the multicollinearity effect among anthropometric predictor variables. The statistical tests in terms of coefficient of determination (R (2)), root mean square error (RMSE), and mean absolute percentage error (MAPE) revealed that PCA based LS-SVM (PCA-LS-SVM) model produced a more efficient prediction of BP reactivity as compared to other models. This assessment presents the importance and advantages posed by PCA fused prediction models for prediction of biological variables. PMID:25328536

  2. 1. ENVIRONMENT, FROM NORTHWEST, SHOWING B&P INTERLOCKING TOWER AND POWER ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. ENVIRONMENT, FROM NORTHWEST, SHOWING B&P INTERLOCKING TOWER AND POWER SUBSTATIONS - Baltimore & Potomac Interlocking Tower, Adjacent to AMTRAK railroad tracks in block bounded by Howard Street, Jones Falls Expressway, Maryland Avenue & Falls Road, Baltimore, Independent City, MD

  3. Prediction of BP Reactivity to Talking Using Hybrid Soft Computing Approaches

    PubMed Central

    Arora, Ajat Shatru; Jain, Vijender Kumar

    2014-01-01

    High blood pressure (BP) is associated with an increased risk of cardiovascular diseases. Therefore, optimal precision in measurement of BP is appropriate in clinical and research studies. In this work, anthropometric characteristics including age, height, weight, body mass index (BMI), and arm circumference (AC) were used as independent predictor variables for the prediction of BP reactivity to talking. Principal component analysis (PCA) was fused with artificial neural network (ANN), adaptive neurofuzzy inference system (ANFIS), and least square-support vector machine (LS-SVM) model to remove the multicollinearity effect among anthropometric predictor variables. The statistical tests in terms of coefficient of determination (R 2), root mean square error (RMSE), and mean absolute percentage error (MAPE) revealed that PCA based LS-SVM (PCA-LS-SVM) model produced a more efficient prediction of BP reactivity as compared to other models. This assessment presents the importance and advantages posed by PCA fused prediction models for prediction of biological variables. PMID:25328536

  4. Sodium nitroprusside: low price and safe drug to control BP during thrombolysis in AIS.

    PubMed

    Koslyk, Jessyca L; Ducci, Renata D; Nóvak, Edison M; Zétola, Viviane F; Lange, Marcos C

    2015-09-01

    This study analyzes the use of sodium nitroprusside (SN) as an option to reduce blood pressure (BP) below 180/105 mmHg during the management of acute ischemic stroke (AIS) in patients submitted to intravenous thrombolysis.Method The sample was composed by 60 patients who had AIS and were submitted to intravenous rtPA, split in two groups: half in the control group (CG) with BP < 180/105 mmHg and half in SN group with BP > 180/105 mmHg. Outcome variables were any hemorrhagic transformation (HT); the presence of symptomatic HT, National Institute of Health Stroke Scale (NIHSS) after 24 hours of treatment; the independence on discharge and death until three months after stroke onset.Results There were no statistical differences between both groups to any of the outcome variables analyzed.Conclusion The SN might be safe for BP control during thrombolysis to AIS. PMID:26352493

  5. Environmental Conditions in northern Gulf of Mexico Estuaries: before and after the BP Oil Spill

    EPA Science Inventory

    This presentation provides a summary of ecological condition and sediment chemistry data for northern Gulf of Mexico estuaries that were exposed to oil and oil-related contaminants from the BP Oil Spill.

  6. Role of the CacyBP/SIP protein in gastric cancer

    PubMed Central

    ZHAI, HUIHONG; MENG, JUAN; JIN, HAIFENG; LI, YUANFEI; WANG, JINBO

    2015-01-01

    Various reports indicate that calcyclin binding protein/Siah-1-interacting protein (CacyBP/SIP) is an important protein in tumorigenesis, but whether CacyBP/SIP promotes or suppresses cancer may depend on the cell type. In order to investigate whether CacyBP/SIP is significant in gastric cancerous tumorigenesis, the present study used immunohistochemistry to analyze 181 gastric cancer tissue samples, as well as 181 healthy tissue samples from the same gastric cancer patients. The immunohistochemical results were compared against patient data and pathological analysis of the tissue slices, including gender, age, degree of tumor differentiation and tumor, node, metastasis (TNM) stage. In addition, the level of CacyBP/SIP expression was detected in three frozen tissue samples of gastric adenocarcinoma using western blot analysis. Of the 181 cases analyzed in the present study, 80 cases were identified as non-metastatic gastric cancer and 101 cases were identified as gastric cancer that had metastasized to the lymph nodes. Tissue biopsies from the two sets of patients were examined using immunohistochemistry to identify the level of CacyBP/SIP expression in metastatic and primary gastric cancer tissues. Statistical analyses were performed on all data. The immunohistochemical analysis revealed that CacyBP/SIP was expressed in 31% (56/181) of gastric adenocarcinoma tissue samples and 7% (12/181) of adjacent non-cancerous gastric tissues (P<0.05). Furthermore, the expression levels of CacyBP/SIP were higher in cancerous tissue compared with the adjacent non-cancerous gastric tissue using western blotting. No association was identified between CacyBP/SIP expression and patient age (P=0.975), gender (P=0.185), degree of tumor differentiation (P=0.076) or TNM stage (P=0.979). Among the 101 patients with metastatic gastric cancer, CacyBP/SIP was expressed at primary sites in 31% (31/101) of cases and at metastatic sites in 26% (26/101) of cases (P=0.434). However, among the

  7. A Role for Anti-BP180 Autoantibodies in Chronic Rhinosinusitis

    PubMed Central

    Jeffe, Jill S.; Seshadri, Sudarshan; Hamill, Kevin J.; Huang, Julia He; Carter, Roderick; Suh, Lydia; Hulse, Kathryn; Norton, James; Conley, David B.; Chandra, Rakesh K.; Kern, Robert C.; Jones, Jonathan C.R.; Schleimer, Robert P.; Tan, Bruce K.

    2013-01-01

    Objectives CRS is accompanied by evidence of a vigorous adaptive immune response, and emerging studies demonstrate that some nasal polyps manifest a polyclonal autoantibody response. We previously found that antibodies against BP180, a component of the hemidesmosome complex and the dominant epitope in autoimmune bullous pemphigoid, were found at elevated levels in nasal polyp tissue. Given the critical role of hemidesmosomes in maintaining epithelial integrity, we sought to investigate the distribution of BP180 in nasal tissue and evaluate for evidence of systemic autoimmunity against this antigen in CRS. Study Design Case-control experimental study Methods The expression and distribution of BP180 in cultured nasal epithelial cells and normal nasal tissue were confirmed using real-time PCR, Western immunoblotting, immunofluorescence and immunohistochemistry. Sera were collected from three groups: control, CRSsNP, and CRSwNP. A commercially available ELISA was utilized to compare anti-BP180 autoantibody levels in sera. Results BP180 is expressed in nasal epithelium, but is not confined to the basement membrane as it is in human skin. In cultured nasal epithelial cells, confocal immunofluoresence showed a punctate distribution of BP180 along the basal surface, consistent with its distribution in epithelial keratinocytes. There are significantly higher levels of circulating nonpathologic anti-BP180 autoantibodies in CRS patients compared with normal controls (p<0.05). Conclusions BP180 is more widely expressed in nasal epithelium versus skin, although it appears to play a similar role in formation of hemidesmosomes along the basement membrane. Further investigations are ongoing to characterize the pathogenicity of the anti-epithelial antibody response in CRS. PMID:24167818

  8. RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation

    PubMed Central

    Palanichamy, Jayanth Kumar; Tran, Tiffany M.; Howard, Jonathan M.; Contreras, Jorge R.; Fernando, Thilini R.; Sterne-Weiler, Timothy; Katzman, Sol; Toloue, Masoud; Yan, Weihong; Sanford, Jeremy R.; Rao, Dinesh S.

    2016-01-01

    Posttranscriptional control of gene expression is important for defining both normal and pathological cellular phenotypes. In vitro, RNA-binding proteins (RBPs) have recently been shown to play important roles in posttranscriptional regulation; however, the contribution of RBPs to cell specification is not well understood. Here, we determined that the RBP insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3) is specifically overexpressed in mixed lineage leukemia–rearranged (MLL-rearranged) B-acute lymphoblastic leukemia (B-ALL), which constitutes a subtype of this malignancy associated with poor prognosis and high risk of relapse. IGF2BP3 was required for the survival of B-ALL cell lines, as knockdown led to decreased proliferation and increased apoptosis. Enforced expression of IGF2BP3 provided murine BM cells with a strong survival advantage, led to proliferation of hematopoietic stem and progenitor cells, and skewed hematopoietic development to the B cell/myeloid lineage. Cross-link immunoprecipitation and high throughput sequencing uncovered the IGF2BP3-regulated transcriptome, which includes oncogenes MYC and CDK6 as direct targets. IGF2BP3 regulated transcripts via targeting elements within 3′ untranslated regions (3′UTR), and enforced IGF2BP3 expression in mice resulted in enhanced expression of Myc and Cdk6 in BM. Together, our data suggest that IGF2BP3-mediated targeting of oncogenic transcripts may represent a critical pathogenetic mechanism in MLL-rearranged B-ALL and support IGF2BP3 and its cognate RNA-binding partners as potential therapeutic targets in this disease. PMID:26974154

  9. A novel E4BP4 element drives circadian expression of mPeriod2.

    PubMed

    Ohno, Tomoya; Onishi, Yoshiaki; Ishida, Norio

    2007-01-01

    Period2 (Per2) is an essential component of the mammalian clock mechanism and robust circadian expression of Per2 is essential for the maintenance of circadian rhythms. Although recent studies have shown that the circadian E2 enhancer (a non-canonical E-box) accounts for most of the circadian transcriptional drive of mPer2, little is known about the other cis-elements of mPer2 oscillatory transcription. Here, we examined the contribution of E4BP4 to Per2 mRNA oscillation in the cell-autonomous clock. Knockdown experiments of E4BP4 in both Northern blots and real-time luciferase assays suggested that endogenous E4BP4 negatively regulates Per2 mRNA oscillation. Sequence analysis revealed two putative E4BP4-binding sites (termed A-site and B-site) on mammalian Per2 promoter regions. Luciferase assays with mutant constructs showed that a novel E4BP4-binding site (B-site) is responsible for E4BP4-mediated transcriptional repression of Per2. Furthermore, chromatin immunoprecipitation assays in vivo showed that the peak of E4BP4 binding to the B-site on the Per2 promoter almost matched the trough of Per2 mRNA expression. Importantly, real-time luciferase assays showed that the B-site in addition to the E2 enhancer is required for robust circadian expression of Per2 in the cell-autonomous clock. These findings indicated that E4BP4 is required for the negative regulation of mammalian circadian clocks. PMID:17182630

  10. Discrete Sampling Test Plan for the 200-BP-5 Operable Unit

    SciTech Connect

    Sweeney, Mark D.

    2010-02-04

    The Discrete Groundwater Sampling Project is conducted by the Pacific Northwest National Laboratory (PNNL) on behalf of CH2M HILL Plateau Remediation Company. The project is focused on delivering groundwater samples from proscribed horizons within select groundwater wells residing in the 200-BP-5 Operable Unit (200-BP-5 OU) on the Hanford Site. This document provides the scope, schedule, methodology, and other details of the PNNL discrete sampling effort.

  11. Occurrence of 4-tert-butylphenol (4-t-BP) biodegradation in an aquatic sample caused by the presence of Spirodela polyrrhiza and isolation of a 4-t-BP-utilizing bacterium.

    PubMed

    Ogata, Yuka; Toyama, Tadashi; Yu, Ning; Wang, Xuan; Sei, Kazunari; Ike, Michihiko

    2013-04-01

    Although 4-tert-butylphenol (4-t-BP) is a serious aquatic pollutant, its biodegradation in aquatic environments has not been well documented. In this study, 4-t-BP was obviously and repeatedly removed from water from four different environments in the presence of Spirodela polyrrhiza, giant duckweed, but 4-t-BP persisted in the environmental waters in the absence of S. polyrrhiza. Also, 4-t-BP was not removed from autoclaved pond water with sterilized S. polyrrhiza. These results suggest that the 4-t-BP removal from the environmental waters was caused by biodegradation stimulated by the presence of S. polyrrhiza rather than by uptake by the plant. Moreover, Sphingobium fuliginis OMI capable of utilizing 4-t-BP as a sole carbon and energy source was isolated from the S. polyrrhiza rhizosphere. Strain OMI degraded 4-t-BP via a meta-cleavage pathway, and also degraded a broad range of alkylphenols with linear or branched alkyl side chains containing two to nine carbon atoms. Root exudates of S. polyrrhiza stimulated 4-t-BP degradation and cell growth of strain OMI. Thus, the stimulating effects of S. polyrrhiza root exudates on 4-t-BP-degrading bacteria might have contributed to 4-t-BP removal in the environmental waters with S. polyrrhiza. These results demonstrate that the S. polyrrhiza-bacteria association may be applicable to the removal of highly persistent 4-t-BP from wastewaters or polluted aquatic environments. PMID:22777343

  12. Effects of BP-14, a novel cyclin-dependent kinase inhibitor, on anaplastic thyroid cancer cells.

    PubMed

    Allegri, Lorenzo; Baldan, Federica; Mio, Catia; Puppin, Cinzia; Russo, Diego; Kryštof, Vladimir; Damante, Giuseppe

    2016-04-01

    Anaplastic thyroid carcinoma (ATC) is an extremely aggressive human malignancy characterized by a marked degree of invasiveness, absense of features of thyroid differentiation and resistance to current medical treatment. It is well known that ATCs are characterized by deregulation of genes related to cell cycle regulation, i.e., cyclin-dependent kinases (CDKs) and endogenous cyclin-dependent kinase inhibitors (CDKIs). Therefore, in the present study, the effect of a novel exogenous cyclin-dependent kinase inhibitor, BP-14, was investigated in three human ATC cell lines. The ATC-derived cell lines FRO, SW1736 and 8505C were treated with BP-14 alone or in combination with the mTOR inhibitor everolimus. In all ATC cell lines, treatment with BP-14 decreased cell viability and, in two of them, BP-14 modified expression of genes involved in epithelial-mesenchymal transition. Thus, our data indicate that BP-14 is a potential new compound effective against ATC. Combined treatment with BP-14 and the mTOR inhibitor everolimus had a strong synergistic effect on cell viability in all three cell lines, suggesting that the combined used of CDK and mTOR inhibitors may be a useful strategy for ATC treatment. PMID:26884249

  13. Translation control during prolonged mTORC1 inhibition mediated by 4E-BP3.

    PubMed

    Tsukumo, Yoshinori; Alain, Tommy; Fonseca, Bruno D; Nadon, Robert; Sonenberg, Nahum

    2016-01-01

    Targeting mTORC1 is a highly promising strategy in cancer therapy. Suppression of mTORC1 activity leads to rapid dephosphorylation of eIF4E-binding proteins (4E-BP1-3) and subsequent inhibition of mRNA translation. However, how the different 4E-BPs affect translation during prolonged use of mTOR inhibitors is not known. Here we show that the expression of 4E-BP3, but not that of 4E-BP1 or 4E-BP2, is transcriptionally induced during prolonged mTORC1 inhibition in vitro and in vivo. Mechanistically, our data reveal that 4E-BP3 expression is controlled by the transcription factor TFE3 through a cis-regulatory element in the EIF4EBP3 gene promoter. CRISPR/Cas9-mediated EIF4EBP3 gene disruption in human cancer cells mitigated the inhibition of translation and proliferation caused by prolonged treatment with mTOR inhibitors. Our findings show that 4E-BP3 is an important effector of mTORC1 and a robust predictive biomarker of therapeutic response to prolonged treatment with mTOR-targeting drugs in cancer. PMID:27319316

  14. Translation control during prolonged mTORC1 inhibition mediated by 4E-BP3

    PubMed Central

    Tsukumo, Yoshinori; Alain, Tommy; Fonseca, Bruno D.; Nadon, Robert; Sonenberg, Nahum

    2016-01-01

    Targeting mTORC1 is a highly promising strategy in cancer therapy. Suppression of mTORC1 activity leads to rapid dephosphorylation of eIF4E-binding proteins (4E-BP1–3) and subsequent inhibition of mRNA translation. However, how the different 4E-BPs affect translation during prolonged use of mTOR inhibitors is not known. Here we show that the expression of 4E-BP3, but not that of 4E-BP1 or 4E-BP2, is transcriptionally induced during prolonged mTORC1 inhibition in vitro and in vivo. Mechanistically, our data reveal that 4E-BP3 expression is controlled by the transcription factor TFE3 through a cis-regulatory element in the EIF4EBP3 gene promoter. CRISPR/Cas9-mediated EIF4EBP3 gene disruption in human cancer cells mitigated the inhibition of translation and proliferation caused by prolonged treatment with mTOR inhibitors. Our findings show that 4E-BP3 is an important effector of mTORC1 and a robust predictive biomarker of therapeutic response to prolonged treatment with mTOR-targeting drugs in cancer. PMID:27319316

  15. CtBP1 associates metabolic syndrome and breast carcinogenesis targeting multiple miRNAs

    PubMed Central

    De Luca, Paola; Dalton, Guillermo N.; Scalise, Georgina D.; Moiola, Cristian P.; Porretti, Juliana; Massillo, Cintia; Kordon, Edith; Gardner, Kevin; Zalazar, Florencia; Flumian, Carolina; Todaro, Laura; Vazquez, Elba S.; Meiss, Roberto; De Siervi, Adriana

    2016-01-01

    Metabolic syndrome (MeS) has been identified as a risk factor for breast cancer. C-terminal binding protein 1 (CtBP1) is a co-repressor of tumor suppressor genes that is activated by low NAD+/NADH ratio. High fat diet (HFD) increases intracellular NADH. We investigated the effect of CtBP1 hyperactivation by HFD intake on mouse breast carcinogenesis. We generated a MeS-like disease in female mice by chronically feeding animals with HFD. MeS increased postnatal mammary gland development and generated prominent duct patterns with markedly increased CtBP1 and Cyclin D1 expression. CtBP1 induced breast cancer cells proliferation. Serum from animals with MeS enriched the stem-like/progenitor cell population from breast cancer cells. CtBP1 increased breast tumor growth in MeS mice modulating multiple genes and miRNA expression implicated in cell proliferation, progenitor cells phenotype, epithelial to mesenchymal transition, mammary development and cell communication in the xenografts. These results define a novel function for CtBP1 in breast carcinogenesis. PMID:26933806

  16. CtBP1 associates metabolic syndrome and breast carcinogenesis targeting multiple miRNAs.

    PubMed

    De Luca, Paola; Dalton, Guillermo N; Scalise, Georgina D; Moiola, Cristian P; Porretti, Juliana; Massillo, Cintia; Kordon, Edith; Gardner, Kevin; Zalazar, Florencia; Flumian, Carolina; Todaro, Laura; Vazquez, Elba S; Meiss, Roberto; De Siervi, Adriana

    2016-04-01

    Metabolic syndrome (MeS) has been identified as a risk factor for breast cancer. C-terminal binding protein 1 (CtBP1) is a co-repressor of tumor suppressor genes that is activated by low NAD+/NADH ratio. High fat diet (HFD) increases intracellular NADH. We investigated the effect of CtBP1 hyperactivation by HFD intake on mouse breast carcinogenesis. We generated a MeS-like disease in female mice by chronically feeding animals with HFD. MeS increased postnatal mammary gland development and generated prominent duct patterns with markedly increased CtBP1 and Cyclin D1 expression. CtBP1 induced breast cancer cells proliferation. Serum from animals with MeS enriched the stem-like/progenitor cell population from breast cancer cells. CtBP1 increased breast tumor growth in MeS mice modulating multiple genes and miRNA expression implicated in cell proliferation, progenitor cells phenotype, epithelial to mesenchymal transition, mammary development and cell communication in the xenografts. These results define a novel function for CtBP1 in breast carcinogenesis. PMID:26933806

  17. Asian-specific mitochondrial genome polymorphism (9-bp deletion) in Hungarian patients with mitochondrial disease.

    PubMed

    Pentelenyi, Klara; Remenyi, Viktoria; Gal, Aniko; Milley, Gyorgy Mate; Csosz, Aranka; Mende, Balazs Gusztav; Molnar, Maria Judit

    2016-05-01

    A 9-bp deletion of the mtDNA is known as an anthropological marker of people with East-Asian origin. This 9-bp mtDNA deletion was analyzed in 1073 Hungarians with suspected mitochondrial disease and in 468 healthy control individuals. Fourteen cases with the 9-bp deletion were found in the cohort of mitochondrial patients, and one individual from 468 controls. In six cases the 9-bp deletion was present together with pathogenic major deletions in the mitochondrial genome. In one patient we found a frame shift mutation in the D-loop region, and in another family a pathogenic m.8322 A > G mutation in the tRNA(Lys) gene. Although the 9-bp deletion is common in the populations of the Pacific region and Asia, it is present in the Hungarian population as well. This 9-bp deletion may induce instability of the mtDNA and may provoke the introduction of other pathogenic mutations. PMID:25242187

  18. 53BP1 fosters fidelity of homology-directed DNA repair.

    PubMed

    Ochs, Fena; Somyajit, Kumar; Altmeyer, Matthias; Rask, Maj-Britt; Lukas, Jiri; Lukas, Claudia

    2016-08-01

    Repair of DNA double-strand breaks (DSBs) in mammals is coordinated by the ubiquitin-dependent accumulation of 53BP1 at DSB-flanking chromatin. Owing to its ability to limit DNA-end processing, 53BP1 is thought to promote nonhomologous end-joining (NHEJ) and to suppress homology-directed repair (HDR). Here, we show that silencing 53BP1 or exhausting its capacity to bind damaged chromatin changes limited DSB resection to hyper-resection and results in a switch from error-free gene conversion by RAD51 to mutagenic single-strand annealing by RAD52. Thus, rather than suppressing HDR, 53BP1 fosters its fidelity. These findings illuminate causes and consequences of synthetic viability acquired through 53BP1 silencing in cells lacking the BRCA1 tumor suppressor. We show that such cells survive DSB assaults at the cost of increasing reliance on RAD52-mediated HDR, which may fuel genome instability. However, our findings suggest that when challenged by DSBs, BRCA1- and 53BP1-deficient cells may become hypersensitive to, and be eliminated by, RAD52 inhibition. PMID:27348077

  19. Structural plasticity of methyllysine recognition by the tandem Tudor domain of 53BP1

    PubMed Central

    Tong, Qiong; Cui, Gaofeng; Botuyan, Maria Victoria; Rothbart, Scott B.; Hayashi, Ryo; Musselman, Catherine A.; Singh, Namit; Appella, Ettore; Strahl, Brian D.; Mer, Georges; Kutateladze, Tatiana G.

    2014-01-01

    SUMMARY p53 is dynamically regulated through various posttranslational modifications (PTMs), which differentially modulate its function and stability. The dimethylated marks p53K370me2 and p53K382me2 are associated with p53 activation or stabilization and both are recognized by the tandem Tudor domain (TTD) of 53BP1, a p53 co-factor. Here we detail the molecular mechanisms for the recognition of p53K370me2 and p53K382me2 by 53BP1. The solution structures of TTD in complex with the p53K370me2 and p53K382me2 peptides show a remarkable plasticity of 53BP1 in accommodating these diverse dimethyllysine-containing sequences. We demonstrate that dimeric TTDs are capable of interacting with the two PTMs on a single p53K370me2K382me2 peptide, greatly strengthening the 53BP1-p53 interaction. Analysis of binding affinities of TTD toward methylated p53 and histones reveals strong preference of 53BP1 for p53K382me2, H4K20me2, and H3K36me2 and suggests a possible role of multivalent contacts of 53BP1 in p53 targeting to and accumulation at the sites of DNA damage. PMID:25579814

  20. The negative transcription factor E4BP4 is associated with circadian clock protein PERIOD2.

    PubMed

    Ohno, Tomoya; Onishi, Yoshiaki; Ishida, Norio

    2007-03-23

    The bZIP transcription factor E4BP4, is a mammalian homologue of vrille that functions as a key negative component of the circadian clock. We have shown that the E4BP4-binding site (B-site) is required in addition to a non-canonical E-box (E2 enhancer) for robust circadian Period2 (Per2) expression in the cell-autonomous clock. While the E2 enhancer and the B-site are closely situated, correlations between each component bound to the E2 enhancer and the B-site remain obscure. Here, we show that E4BP4 interacts with PER2, which represses transcriptional activity via the E-box enhancer. Interaction with PER2 required the carboxyl-terminal region that contains the repression domain of E4BP4. We also found that E4BP4 interacts with CRYPTOCHROME2 (CRY2), a key negative regulator in the mammalian circadian clock. These results suggest that E4BP4 is a component of the negative regulator complex of mammalian circadian clocks. PMID:17274955

  1. The preparation of BP single crystals by high pressure flux method

    NASA Technical Reports Server (NTRS)

    Kumashiro, Y.; Misawa, S.; Gonda, S.

    1984-01-01

    Single crystals of BP, a III-V compound semiconductor, were obtained by the high pressure flux method. Cu3P and Ni12P5 powders were used as the flux, and mixed with BP powder. Two kinds of mixtures were prepared: (1) 1.8g (BP) + 35 G (Cu3P) and (2) 1.7 g (BP) + 25 g (Ni12P5). They were compressed into pellets, heated at 1300 C for 24 h in an induction furnace under a pressure of 1 MPa using Ar-P2 gas, and slowly cooled to room temperature. In case (1), BP single crystals grew along the (III) plane, and in case (2) they grew as an aggregate of crystallites. The cathodoluminescence spectra of the synthetic BP crystals showed peaks near 680 nm (1.82 eV) for case (1), and 500 nm (2.47 eV) for case (2). By using the high pressure flux method conventional sized crystals were obtained in a relatively short time.

  2. Regulation of B cell differentiation by the ubiquitin-binding protein TAX1BP1

    PubMed Central

    Matsushita, Nobuko; Suzuki, Midori; Ikebe, Emi; Nagashima, Shun; Inatome, Ryoko; Asano, Kenichi; Tanaka, Masato; Matsushita, Masayuki; Kondo, Eisaku; Iha, Hidekatsu; Yanagi, Shigeru

    2016-01-01

    Tax1-binding protein 1 (TAX1BP1) is a ubiquitin-binding protein that restricts nuclear factor-κB (NF-κB) activation and facilitates the termination of aberrant inflammation. However, its roles in B-cell activation and differentiation are poorly understood. To evaluate the function of TAX1BP1 in B cells, we established TAX1BP1-deficient DT40 B cells that are hyper-responsive to CD40-induced extracellular signal-regulated kinase (ERK) activation signaling, exhibit prolonged and exaggerated ERK phosphorylation and show enhanced B lymphocyte-induced maturation protein 1 (Blimp-1; a transcription factor inducing plasma cell differentiation) expression that is ERK-dependent. Furthermore, TAX1BP1-deficient cells exhibit significantly decreased surface IgM expression and increased IgM secretion. Moreover, TAX1BP1-deficient mice display reduced germinal center formation and antigen-specific antibody production. These findings show that TAX1BP1 restricts ERK activation and Blimp-1 expression and regulates germinal center formation. PMID:27515252

  3. The effects of PEP-1-FK506BP on dry eye disease in a rat model

    PubMed Central

    Kim, Dae Won; Lee, Sung Ho; Ku, Sae Kwang; Lee, Ji Eun; Cha, Hyun Ju; Youn, Jong Kyu; Kwon, Hyeok Yil; Park, Jong Hoon; Park, Eun Young; Cho, Sung-Woo; Han, Kyu Hyung; Park, Jinseu; Eum, Won Sik; Choi, Soo Young

    2015-01-01

    As FK506 binding proteins (FK506BPs) are known to play an important role in the regulation of a variety of biological processes related to cell survival, this study was designed to examined the protective effects of FK506 binding protein 12 (FK506BP) on low humidity air flow induced dry eye in a rat model using transduced PEP-1-FK506BP. After the topical application of PEP-1-FK506BP, tear volumes were markedly increased and significant prevention of cornea damage was observed compared with dry eye rats. Further, immunohistochemical analysis demonstrated that PEP-1-FK506BP markedly prevented damage to the cornea, the bulbar conjunctiva, and the palpebral conjunctiva epithelial lining compared with dry eye rats. In addition, caspase-3 and PARP expression levels were found to be decreased. These results demonstrated that topical application of PEP-1-FK506BP significantly ameliorates dry eye injury in an animal model. Thus, we suggest that PEP-1-FK506BP can be developed as a new ophthalmic drop to treat dry eye diseases. [BMB Reports 2015; 48(3): 153-158] PMID:24998262

  4. 15q11.2 microdeletion (BP1-BP2) and developmental delay, behaviour issues, epilepsy and congenital heart disease: a series of 52 patients.

    PubMed

    Vanlerberghe, Clémence; Petit, Florence; Malan, Valérie; Vincent-Delorme, Catherine; Bouquillon, Sonia; Boute, Odile; Holder-Espinasse, Muriel; Delobel, Bruno; Duban, Bénédicte; Vallee, Louis; Cuisset, Jean-Marie; Lemaitre, Marie-Pierre; Vantyghem, Marie-Christine; Pigeyre, Marie; Lanco-Dosen, Sandrine; Plessis, Ghislaine; Gerard, Marion; Decamp, Matthieu; Mathieu, Michèle; Morin, Gilles; Jedraszak, Guillaume; Bilan, Frédéric; Gilbert-Dussardier, Brigitte; Fauvert, Delphine; Roume, Joëlle; Cormier-Daire, Valérie; Caumes, Roseline; Puechberty, Jacques; Genevieve, David; Sarda, Pierre; Pinson, Lucie; Blanchet, Patricia; Lemeur, Nathalie; Sheth, Frenny; Manouvrier-Hanu, Sylvie; Andrieux, Joris

    2015-03-01

    Proximal region of chromosome 15 long arm is rich in duplicons that, define five breakpoints (BP) for 15q rearrangements. 15q11.2 microdeletion between BP1 and BP2 has been previously associated with developmental delay and atypical psychological patterns. This region contains four highly-conserved and non-imprinted genes: NIPA1, NIPA2, CYFIP1, TUBGCP5. Our goal was to investigate the phenotypes associated with this microdeletion in a cohort of 52 patients. This copy number variation (CNV) was prevalent in 0.8% patients presenting with developmental delay, psychological pattern issues and/or multiple congenital malformations. This was studied by array-CGH at six different French Genetic laboratories. We collected data from 52 unrelated patients (including 3 foetuses) after excluding patients with an associated genetic alteration (known CNV, aneuploidy or known monogenic disease). Out of 52 patients, mild or moderate developmental delay was observed in 68.3%, 85.4% had speech impairment and 63.4% had psychological issues such as Attention Deficit and Hyperactivity Disorder, Autistic Spectrum Disorder or Obsessive-Compulsive Disorder. Seizures were noted in 18.7% patients and associated congenital heart disease in 17.3%. Parents were analysed for abnormalities in the region in 65.4% families. Amongst these families, 'de novo' microdeletions were observed in 18.8% and 81.2% were inherited from one of the parents. Incomplete penetrance and variable expressivity were observed amongst the patients. Our results support the hypothesis that 15q11.2 (BP1-BP2) microdeletion is associated with developmental delay, abnormal behaviour, generalized epilepsy and congenital heart disease. The later feature has been rarely described. Incomplete penetrance and variability of expression demands further assessment and studies. PMID:25596525

  5. G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits.

    PubMed

    Kedersha, Nancy; Panas, Marc D; Achorn, Christopher A; Lyons, Shawn; Tisdale, Sarah; Hickman, Tyler; Thomas, Marshall; Lieberman, Judy; McInerney, Gerald M; Ivanov, Pavel; Anderson, Paul

    2016-03-28

    Mammalian stress granules (SGs) contain stalled translation preinitiation complexes that are assembled into discrete granules by specific RNA-binding proteins such as G3BP. We now show that cells lacking both G3BP1 and G3BP2 cannot form SGs in response to eukaryotic initiation factor 2α phosphorylation or eIF4A inhibition, but are still SG-competent when challenged with severe heat or osmotic stress. Rescue experiments using G3BP1 mutants show that phosphomimetic G3BP1-S149E fails to rescue SG formation, whereas G3BP1-F33W, a mutant unable to bind G3BP partner proteins Caprin1 or USP10, rescues SG formation. Caprin1/USP10 binding to G3BP is mutually exclusive: Caprin binding promotes, but USP10 binding inhibits, SG formation. G3BP interacts with 40S ribosomal subunits through its RGG motif, which is also required for G3BP-mediated SG formation. We propose that G3BP mediates the condensation of SGs by shifting between two different states that are controlled by the phosphorylation of S149 and by binding to Caprin1 or USP10. PMID:27022092

  6. Identification and characterization of a novel calcyclin binding protein (CacyBP) gene from Apis cerana cerana.

    PubMed

    Yu, Xiaoli; Lu, Wenjing; Sun, Rujiang; Guo, Xingqi; Xu, Baohua

    2012-08-01

    Calcyclin binding protein (CacyBP), a homolog of Sgt1, was shown to interact with some S100 proteins, Skp1, tubulin, actin and ERK1/2 kinases. Studies have also shown that CacyBP is a neuronal protein in mammals. Limited information is available regarding the properties and functions of CacyBP in insects. Here, we cloned and characterized a novel CacyBP gene, named AccCacyBP, from honeybee (Apis cerana cerana). Bioinformatic analysis indicated that AccCacyBP was highly conserved and closely related to the CacyBP of other insects. Promoter analysis revealed a number of putative tissue, development and stress-related transcription factor-binding sites. RT-qPCR demonstrated that AccCacyBP was expressed at all of the stages of development, especially in the brains of honeybees. Moreover, immunohistochemistry analysis showed the presence of AccCacyBP in the brain. The transcript levels of AccCacyBP in the brains of honeybees were developmentally induced and upregulated by exposure to oxidative stresses, including UV-light, acetamiprid and HgCl(2). This study demonstrates that the CacyBP gene in honeybees may be a neuronal protein involved in the developmental regulation and the stress-response of the brain of honeybees. PMID:22539186

  7. Non-monotonic mobility vs. length dependence observed in electrophoretic separation of 25 bp DNA ladder in Pluronic gels.

    NASA Astrophysics Data System (ADS)

    You, Seungyong; van Winkle, David

    2009-03-01

    We electrophoresed a double-stranded DNA ladder first in an agarose gel, then in gels of Pluronic F-127 at room temperature. The DNA ladder consisted of 19 discrete fragments ranging in length from 25 to 450 bp at 25 bp increments plus 500 bp. The DNA fragments were first separated in agarose gel and stacked normally with 25 bp having the highest mobility. A single lane of the separated DNA ladder in the agarose gel was inserted at the edge of a Pluronic gel slab. The DNA was electrophoresed from the agarose into the Pluronic gels perpendicular to the original separation axis. Mobilities of DNA fragments increased from 25 bp to 175 bp and then decreased from 175 bp to 500 bp. The 25 bp and 500 bp bands of the ladder had approximately the same mobility in several different Pluronic gel concentrations. Both were slower than most bands in between. The highest mobility fragments with length of 175 bp have 59.5 nm contour length which is about 3.5 times the diameter of a micelle (17 nm). This result suggests a crossover from chromatographic separation to electrophoretic separation for these short DNAs. This research is supported by the state of Florida (Martech) and Research Corporation.

  8. BpMADS4 has a central role in inflorescence initiation in silver birch (Betula pendula).

    PubMed

    Elo, Annakaisa; Lemmetyinen, Juha; Novak, Anu; Keinonen, Kaija; Porali, Ilkka; Hassinen, Minna; Sopanen, Tuomas

    2007-09-01

    Acceleration of flowering would be beneficial for breeding trees with a long juvenile phase; conversely, inhibition of flowering would prevent the spread of transgenes from the genetically modified trees. We have previously isolated and characterized several MADS genes from silver birch (Betula pendula Roth). In this study, we investigated the more detailed function of one of them, BpMADS4, a member of the APETALA1/FRUITFULL group of MADS genes. The expression of BpMADS4 starts at very early stage of the male and female inflorescence development and the activity is high in the apex of the developing inflorescence. Later, some expression is detected in the bracts and in the flower initials. Ectopic expression of BpMADS4 accelerates flowering dramatically in normally flowering clones and also in the early-flowering birch clone, in which the earliest line flowered about 11 days after rooting, when the saplings were only 3 cm high. The birches transformed with the BpMADS4 antisense construct showed remarkable delay in flowering and the number of flowering individuals was reduced. Two of the transformed lines did not show any signs of flower development during our 2-year study, whereas all the control plants formed inflorescences within 107 days. Our results show that BpMADS4 has a critical role in the initiation of birch inflorescence development and that BpMADS4 seems to be involved in the transition from vegetative to reproductive development. Therefore, BpMADS4 provides a promising tool for the genetic enhancement of forest trees. PMID:18251933

  9. Stable semiconductor black phosphorus (BP)@titanium dioxide (TiO2) hybrid photocatalysts.

    PubMed

    Lee, Hyun Uk; Lee, Soon Chang; Won, Jonghan; Son, Byung-Chul; Choi, Saehae; Kim, Yooseok; Park, So Young; Kim, Hee-Sik; Lee, Young-Chul; Lee, Jouhahn

    2015-01-01

    Over the past few decades, two-dimensional (2D) and layered materials have emerged as new fields. Due to the zero-band-gap nature of graphene and the low photocatalytic performance of MoS2, more advanced semiconducting 2D materials have been prompted. As a result, semiconductor black phosphorus (BP) is a derived cutting-edge post-graphene contender for nanoelectrical application, because of its direct-band-gap nature. For the first time, we report on robust BP@TiO2 hybrid photocatalysts offering enhanced photocatalytic performance under light irradiation in environmental and biomedical fields, with negligible affected on temperature and pH conditions, as compared with MoS2@TiO2 prepared by the identical synthesis method. Remarkably, in contrast to pure few layered BP, which, due to its intrinsic sensitivity to oxygen and humidity was readily dissolved after just several uses, the BP@TiO2 hybrid photocatalysts showed a ~92% photocatalytic activity after 15 runs. Thus, metal-oxide-stabilized BP photocatalysts can be practically applied as a promising alternative to graphene and MoS2. PMID:25732720

  10. A BP neural network model for sea state recognition using laser altimeter

    NASA Astrophysics Data System (ADS)

    Shi, Chun-bo; Jia, Xiao-dong; Li, Sheng; Wang, Zhen

    2009-07-01

    A BP neural network method for the recognition of sea state in laser altimeter is presented in this paper. Sea wave is the typical stochastic disturbance factor of laser altimeter effecting on low-altitude defense penetration of the intelligent antiship missiles, the recognition of sea state is studied in order to satisfy the practical needs of flying over the ocean. The BP neural network fed with the feature vector of laser range-measurement presents the analysis of features and outputs the estimation result of sea state. The two most distinguishing features are the mean and the variance of the sea echo, which are extracted from the distance characteristics of sea echo using general theory of statistics. The use of a feedforward network trained with the back-propagation algorithm is also investigated. The BP neural network is trained using sample data set to the neural network, and then the BP neural network trained is tested to recognize the sea state waiting for the classification. The network output shows the recognition accuracy of the model can up to 88%, and the results of tests show that the BP neural network model for the recognition of sea state is feasible and effective.

  11. Targeting TopBP1 at a convergent point of multiple oncogenic pathways for cancer therapy

    PubMed Central

    Chowdhury, Pinki; Lin, Gregory E.; Liu, Kang; Song, Yongcheng; Lin, Fang-Tsyr; Lin, Weei-Chin

    2014-01-01

    The progression of many solid tumors is driven by de-regulation of multiple common pathways, particularly Rb, PI (3) K/Akt and p53. Prior studies identified TopBP1as a key mediator for the oncogenic gain-of-function activities of mutant p53 (mutp53) in cancer. In Akt-hyperactive cancer, TopBP1 forms oligomers and represses E2F1-dependent apoptosis. Here we perform a molecular docking screening and identify a lead compound, calcein, capable of blocking TopBP1 oligomerization and p53 binding, resulting in re-activation of E2F1-dependent apoptosis and blockade of mutp53 gain-of-function. Calcein AM, the cell permeable derivative of calcein, shows significant anti-tumor activity in a wide-spectrum of cultured cancer cells harboring high TopBP1 levels. These biochemical findings are recapitulated in breast cancer xenograft models. Thus, our study provides proof-of-concept evidence for targeting TopBP1, a convergent point of multiple pathways, as a cancer therapy. PMID:25400145

  12. Northern East Pacific Rise: Evolution from 25 m.y. B.P. to the present

    NASA Astrophysics Data System (ADS)

    Mammerickx, Jacqueline; Klitgord, Kim D.

    1982-08-01

    The northeast Pacific topography and magnetic lineations (25 m.y. B.P. to the Present) record the traces of three major spreading reorganizations. Only one spreading center is observed today, but there is evidence for several ephemeral episodes of twin spreading accompanying the evolution from an extensive Pacific-Guadalupe plate boundary to a much shortened Pacific-Cocos and Pacific-Rivera plate boundary. The 25 m.y. B.P. plate reorganization culminated with the formation of the Guadalupe plate, bound by the Murray fracture zone to the north and the Cocos-Nazca spreading ridge to the south. Between 25 and 12.5 m.y. B.P. spreading continued while the plate retained the same general outline. The 12.5-11 m.y. B.P. reorganization resulted in the creation of a much shortened Pacific-Cocos plate boundary located in its early stages over the Mathematician seamounts and a much reduced Cocos-plate. The last reorganizaton (6.5-3.5 m.y. B.P.) resulted in the abandonment of the Mathematician spreading ridge as a Pacific-Cocos plate boundary in favor of the East Pacific Rise.

  13. Stable semiconductor black phosphorus (BP)@titanium dioxide (TiO2) hybrid photocatalysts

    PubMed Central

    Uk Lee, Hyun; Lee, Soon Chang; Won, Jonghan; Son, Byung-Chul; Choi, Saehae; Kim, Yooseok; Park, So Young; Kim, Hee-Sik; Lee, Young-Chul; Lee, Jouhahn

    2015-01-01

    Over the past few decades, two-dimensional (2D) and layered materials have emerged as new fields. Due to the zero-band-gap nature of graphene and the low photocatalytic performance of MoS2, more advanced semiconducting 2D materials have been prompted. As a result, semiconductor black phosphorus (BP) is a derived cutting-edge post-graphene contender for nanoelectrical application, because of its direct-band-gap nature. For the first time, we report on robust BP@TiO2 hybrid photocatalysts offering enhanced photocatalytic performance under light irradiation in environmental and biomedical fields, with negligible affected on temperature and pH conditions, as compared with MoS2@TiO2 prepared by the identical synthesis method. Remarkably, in contrast to pure few layered BP, which, due to its intrinsic sensitivity to oxygen and humidity was readily dissolved after just several uses, the BP@TiO2 hybrid photocatalysts showed a ~92% photocatalytic activity after 15 runs. Thus, metal-oxide-stabilized BP photocatalysts can be practically applied as a promising alternative to graphene and MoS2. PMID:25732720

  14. HIV-1 Vpr increases HCV replication through VprBP in cell culture.

    PubMed

    Yan, Yanling; Huang, Fang; Yuan, Ting; Sun, Binlian; Yang, Rongge

    2016-09-01

    Coinfection of human immunodeficiency virus (HIV) and hepatitis C virus (HCV) occurs at a high frequency, in which HIV shows a promotion of HCV-derived liver diseases. However, the mechanism of how this occurs is not well understood. Our previous work has demonstrated that the HIV-1 accessory protein Vpr enhances HCV RNA replication in cell culture. Because Vpr performs most of its functions through host protein VprBP (DCAF1), the role of VprBP in the regulation of HCV by Vpr was investigated in this study. We found that the Vpr mutant Q65R, which is deficient in VprBP binding, could not enhance HCV replication. Furthermore, Vpr-mediated enhancement of HCV replication was severely diminished in VprBP knockdown cells. In addition, an inhibitor of Cullin RING E3 ligases, MLN4924, impaired the function of Vpr during HCV replication. Together, these results suggest that Vpr promotes HCV replication in a VprBP-dependent manner, and that the activity of Cullin RING E3 ligases is essential to this process. In conclusion, our findings demonstrate that HIV-1 Vpr makes the cellular environment more suitable for HCV replication, which might relate with the host ubiquitination system. PMID:27460548

  15. A DNA target of 30 bp is sufficient for RNA-directed DNA methylation.

    PubMed

    Pélissier, T; Wassenegger, M

    2000-01-01

    In higher plants, RNA-DNA interactions can trigger de novo methylation of genomic sequences via a process that is termed RNA-directed DNA methylation (RdDM). In potato spindle tuber viroid (PSTVd)-infected tobacco plants, this process can potentially lead to methylation of all C residues at symmetrical and nonsymmetrical sites within chromosomal inserts that consist of multimers of the 359-bp-long PSTVd cDNA. Using PSTVd cDNA subfragments, we found that genomic targets with as few as 30 nt of sequence complementarity to the viroid RNA are detected and methylated. Genomic sequencing analyses of genome-integrated 30- and 60-bp-long PSTVd subfragments demonstrated that de novo cytosine methylation is not limited to the canonical CpG, CpNpG sites. Sixty-base-pair-long PSTVd cDNA constructs appeared to be densely methylated in nearly all tobacco leaf cells. With the 30-bp-long PSTVd-specific construct, the proportion of cells displaying dense transgene methylation was significantly reduced, suggesting that a minimal target size of about 30 bp is necessary for RdDM. The methylation patterns observed for two different 60-bp constructs further suggested that the sequence identity of the target may influence the methylation mechanism. Finally, a link between viroid pathogenicity and PSTVd RNA-directed methylation of host sequences is proposed. PMID:10668798

  16. 53BP1 deficiency combined with telomere dysfunction activates ATR-dependent DNA damage response.

    PubMed

    Martínez, Paula; Flores, Juana M; Blasco, Maria A

    2012-04-16

    TRF1 protects mammalian telomeres from fusion and fragility. Depletion of TRF1 leads to telomere fusions as well as accumulation of γ-H2AX foci and activation of both the ataxia telangiectasia mutated (ATM)- and the ataxia telangiectasia and Rad3 related (ATR)-mediated deoxyribonucleic acid (DNA) damage response (DDR) pathways. 53BP1, which is also present at dysfunctional telomeres, is a target of ATM that accumulates at DNA double-strand breaks and favors nonhomologous end-joining (NHEJ) repair over ATM-dependent resection and homology-directed repair (homologous recombination [HR]). To address the role of 53BP1 at dysfunctional telomeres, we generated mice lacking TRF1 and 53BP1. 53BP1 deficiency significantly rescued telomere fusions in mouse embryonic fibroblasts (MEFs) lacking TRF1, but they showed evidence of a switch from the NHEJ- to HR-mediated repair of uncapped telomeres. Concomitantly, double-mutant MEFs showed evidence of hyperactivation of the ATR-dependent DDR. In intact mice, combined 53BP1/TRF1 deficiency in stratified epithelia resulted in earlier onset of DNA damage and increased CHK1 phosphorylation during embryonic development, leading to aggravation of skin phenotypes. PMID:22508511

  17. HP1BP3 expression determines maternal behavior and offspring survival.

    PubMed

    Garfinkel, B P; Arad, S; Neuner, S M; Netser, S; Wagner, S; Kaczorowski, C C; Rosen, C J; Gal, M; Soreq, H; Orly, J

    2016-09-01

    Maternal care is an indispensable behavioral component necessary for survival and reproductive success in mammals, and postpartum maternal behavior is mediated by an incompletely understood complex interplay of signals including effects of epigenetic regulation. We approached this issue using our recently established mice with targeted deletion of heterochromatin protein 1 binding protein 3 (HP1BP3), which we found to be a novel epigenetic repressor with critical roles in postnatal growth. Here, we report a dramatic reduction in the survival of pups born to Hp1bp3(-/-) deficient mouse dams, which could be rescued by co-fostering with wild-type dams. Hp1bp3(-/-) females failed to retrieve both their own pups and foster pups in a pup retrieval test, and showed reduced anxiety-like behavior in the open-field and elevated-plus-maze tests. In contrast, Hp1bp3(-/-) females showed no deficits in behaviors often associated with impaired maternal care, including social behavior, depression, motor coordination and olfactory capability; and maintained unchanged anxiety-associated hallmarks such as cholinergic status and brain miRNA profiles. Collectively, our results suggest a novel role for HP1BP3 in regulating maternal and anxiety-related behavior in mice and call for exploring ways to manipulate this epigenetic process. PMID:27470444

  18. Regulation of PMP22 mRNA by G3BP1 affects cell proliferation in breast cancer cells

    PubMed Central

    2013-01-01

    Background Regulation of mRNAs is one way to control protein levels and thereby important cellular processes such as growth, invasion and apoptosis. G3BPs constitute a family of mRNA-binding proteins, shown to be overexpressed in several cancer types, including breast, colon and pancreas cancer. G3BP has been reported to both stabilize and induce degradation of specific mRNAs. Results Here, we show that G3BP1, but not G3BP2, supports proliferation of several breast cancer cell lines. Global gene expression analyses of G3BP1- and G3BP2-depleted cells indicate that primarily G3BP1, and much less G3BP2, influences mRNA expression levels. Peripheral myelin protein 22 (PMP22) was one gene that was significantly influenced by G3BP1 depletion which led to a 2–3 fold increased expression. Depletion of PMP22 resulted in increased proliferation and the G3BP1-mediated effect on proliferation was not seen upon PMP22-depletion. Conclusions This indicates a novel role for G3BP1 in the regulation of cell proliferation in breast cancer cells, perhaps via a regulatory effect on PMP22 expression. PMID:24321297

  19. CacyBP/SIP inhibits Doxourbicin-induced apoptosis of glioma cells due to activation of ERK1/2.

    PubMed

    Tang, Yuan; Zhan, Wenjian; Cao, Tong; Tang, Tianjin; Gao, Yong; Qiu, Zhichao; Fu, Chunling; Qian, Fengyuan; Yu, Rutong; Shi, Hengliang

    2016-03-01

    Calcyclin-binding protein or Siah-1-interacting protein (CacyBP/SIP) was previously reported to promote the proliferation of glioma cells. However, the effect of CacyBP/SIP on apoptosis of glioma is poorly understood. Here, our study shows that CacyBP/SIP plays a role in inhibiting doxorubicin (DOX) induced apoptosis of glioma cells U251 and U87. Overexpression of CacyBP/SIP obviously suppressed the DOX-induced cell apoptosis. On the contrary, silencing of CacyBP/SIP significantly promoted it. Further investigation indicated that inhibition of apoptosis by CacyBP/SIP was relevant to its nuclear translocation in response to the DOX treatment. Importantly, we found that the level of p-ERK1/2 in nuclei was related to the nuclear accumulation of CacyBP/SIP. Finally, the role of CacyBP/SIP was confirmed in vivo in a mouse model with the cell line stably silencing CacyBP/SIP. Taken together, our results suggest that CacyBP/SIP plays an important role in inhibiting apoptosis of glioma cells which might be mediated by ERK1/2 signaling pathway, which will provide some guidance for the treatment of glioma. PMID:26825673

  20. An Ethylene-responsive Factor BpERF11 Negatively Modulates Salt and Osmotic Tolerance in Betula platyphylla.

    PubMed

    Zhang, Wenhui; Yang, Guiyan; Mu, Dan; Li, Hongyan; Zang, Dandan; Xu, Hongyun; Zou, Xuezhong; Wang, Yucheng

    2016-01-01

    Ethylene responsive factors (ERFs) play important roles in the abiotic stress; however, only a few ERF genes from woody plants have been functionally characterized. In the present study, an ERF gene from Betula platyphylla (birch), BpERF11, was functionally characterized in response to abiotic stress. BpERF11 is a nuclear protein, which could specifically bind to GCC boxes and DRE motifs. BpERF11-overexpressing and BpERF11 RNA interference (RNAi) knockdown plants were generated for gain- and loss-of-function analysis. BpERF11 negatively regulates resistance to salt and severe osmotic stress, and the transgenic birch plants overexpressing BpERF11 shows increased electrolyte leakage and malondialdehyde (MDA) contents. BpERF11 inhibits the expression of an AtMYB61 homologous gene, resulting in increased stomatal aperture, which elevated the transpiration rate. Furthermore, BpERF11 downregulates the expression of P5CS, SOD and POD genes, but upregulates the expression of PRODH and P5CDH, which results in reduced proline levels and increased reactive oxygen species (ROS) accumulation. BpERF11 also significantly inhibits the expression of LEA and dehydrin genes that involve in abiotic stress tolerance. Therefore, BpERF11 serves as a transcription factor that negatively regulates salt and severe osmotic tolerance by modulating various physiological processes. PMID:26980058

  1. An Ethylene-responsive Factor BpERF11 Negatively Modulates Salt and Osmotic Tolerance in Betula platyphylla

    PubMed Central

    Zhang, Wenhui; Yang, Guiyan; Mu, Dan; Li, Hongyan; Zang, Dandan; Xu, Hongyun; Zou, Xuezhong; Wang, Yucheng

    2016-01-01

    Ethylene responsive factors (ERFs) play important roles in the abiotic stress; however, only a few ERF genes from woody plants have been functionally characterized. In the present study, an ERF gene from Betula platyphylla (birch), BpERF11, was functionally characterized in response to abiotic stress. BpERF11 is a nuclear protein, which could specifically bind to GCC boxes and DRE motifs. BpERF11-overexpressing and BpERF11 RNA interference (RNAi) knockdown plants were generated for gain- and loss-of-function analysis. BpERF11 negatively regulates resistance to salt and severe osmotic stress, and the transgenic birch plants overexpressing BpERF11 shows increased electrolyte leakage and malondialdehyde (MDA) contents. BpERF11 inhibits the expression of an AtMYB61 homologous gene, resulting in increased stomatal aperture, which elevated the transpiration rate. Furthermore, BpERF11 downregulates the expression of P5CS, SOD and POD genes, but upregulates the expression of PRODH and P5CDH, which results in reduced proline levels and increased reactive oxygen species (ROS) accumulation. BpERF11 also significantly inhibits the expression of LEA and dehydrin genes that involve in abiotic stress tolerance. Therefore, BpERF11 serves as a transcription factor that negatively regulates salt and severe osmotic tolerance by modulating various physiological processes. PMID:26980058

  2. Survey of the bp/tee genes from clinical group A streptococcus isolates in New Zealand - implications for vaccine development.

    PubMed

    Steemson, John D; Moreland, Nicole J; Williamson, Deborah; Morgan, Julie; Carter, Philip E; Proft, Thomas

    2014-12-01

    Group A streptococcus (GAS) is responsible for a wide range of diseases ranging from superficial infections, such as pharyngitis and impetigo, to life-threatening diseases, such as toxic shock syndrome and acute rheumatic fever (ARF). GAS pili are hair-like extensions protruding from the cell surface and consist of highly immunogenic structural proteins: the backbone pilin (BP) and one or two accessory pilins (AP1 and AP2). The protease-resistant BP builds the pilus shaft and has been recognized as the T-antigen, which forms the basis of a major serological typing scheme that is often used as a supplement to M typing. A previous sequence analysis of the bp gene (tee gene) in 39 GAS isolates revealed 15 different bp/tee types. In this study, we sequenced the bp/tee gene from 100 GAS isolates obtained from patients with pharyngitis, ARF or invasive disease in New Zealand. We found 20 new bp/tee alleles and four new bp/tee types/subtypes. No association between bp/tee type and clinical outcome was observed. We confirmed earlier reports that the emm type and tee type are associated strongly, but we also found exceptions, where multiple tee types could be found in certain M/emm type strains, such as M/emm89. We also reported, for the first time, the existence of a chimeric bp/tee allele, which was assigned into a new subclade (bp/tee3.1). A strong sequence conservation of the bp/tee gene was observed within the individual bp/tee types/subtypes (>97 % sequence identity), as well as between historical and contemporary New Zealand and international GAS strains. This temporal and geographical sequence stability provided further evidence for the potential use of the BP/T-antigen as a vaccine target. PMID:25190737

  3. Bone Marrow Transplantation Improves Autoinflammation and Inflammatory Bone Loss in SH3BP2 Knock-In Cherubism Mice

    PubMed Central

    Yoshitaka, Teruhito; Kittaka, Mizuho; Ishida, Shu; Mizuno, Noriyoshi; Mukai, Tomoyuki; Ueki, Yasuyoshi

    2014-01-01

    Cherubism (OMIM#118400) is a genetic disorder in children characterized by excessive jawbone destruction with proliferation of fibro-osseous lesions containing a large number of osteoclasts. Mutations in the SH3-domain binding protein 2 (SH3BP2) are responsible for cherubism. Analysis of the knock-in (KI) mouse model of cherubism showed that homozygous cherubism mice (Sh3bp2KI/KI) spontaneously develop systemic autoinflammation and inflammatory bone loss and that cherubism is a TNF-α-dependent hematopoietic disorder. In this study, we investigated whether bone marrow transplantation (BMT) is effective for the treatment of inflammation and bone loss in Sh3bp2KI/KI mice. Bone marrow (BM) cells from wild-type (Sh3bp2+/+) mice were transplanted to 6-week-old Sh3bp2KI/KI mice with developing inflammation and to 10-week-old Sh3bp2KI/KI mice with established inflammation. Six-week-old Sh3bp2KI/KI mice transplanted with Sh3bp2+/+ BM cells exhibited improved body weight loss, facial swelling, and survival rate. Inflammatory lesions in the liver and lung as well as bone loss in calvaria and mandibula were ameliorated at 10 weeks after BMT compared to Sh3bp2KI/KI mice transplanted with Sh3bp2KI/KI BM cells. Elevation of serum TNF-α levels was not detected after BMT. BMT was effective for up to 20 weeks in 6-week-old Sh3bp2KI/KI mice transplanted with Sh3bp2+/+ BM cells. BMT also ameliorated the inflammation and bone loss in 10-week-old Sh3bp2KI/KI mice. Thus our study demonstrates that BMT improves the inflammation and bone loss in cherubism mice. BMT may be effective for the treatment of cherubism patients. PMID:25445458

  4. A Study of the Mechanisms of Attachment of Allergised Lymphocytes to BP8 Ascites Tumour Cells

    PubMed Central

    Lee, P. J.; Cater, D. B.

    1969-01-01

    The attachment of allergised and non-allergised lymph-node cells from C57B1 mice to BP8 ascites tumour cells were compared in vitro in the presence of vaso-active agents and mediators of the inflammatory reaction. It was found that Priscol, noradrenaline, adrenaline, 5-HT and histamine caused some cell adherence, while bradykinin and lysolecithin caused a marked increase of adherence of the allergised lymph-node cells to the BP8 cells. Electrophoretic studies of BP8 cells in the presence of polyornithine showed an abolition of the anodic mobility. Theories of action of the various agents are discussed. ImagesFigs. 5-8Figs. 1-4 PMID:5364386

  5. Optical and mechanical behavior of GeC and BP antireflection coatings under rain erosion tests

    NASA Astrophysics Data System (ADS)

    Mackowski, Jean-Marie; Cimma, B.; Lacuve, J.; Laprat, Patrice

    1994-09-01

    Thick germanium carbide (GeC) and boron phosphide (BP) films are successfully grown on various zinc sulfide and germanium substrates at temperatures up to 450 degree(s)C by reactive radio-frequency sputtering (RRFS). The sputtering conditions are respectively a germanium target within a medium of methane-argon for GeC films and a high density boron target in a sputtering medium of phosphine-argon for BP films. The rain erosion resistance of GeC and BP films protected or not by diamond-like carbon (DLC) coating on top are measured for water drop diameter of 1.2 mm or 2 mm with an impact velocity ranging from 210 m/s to 265 m/s on the Saab-Scania whirling-arm rig facilities (Linkoping, Sweden). Rain erosion resistance of BP films for a wavelength band in the 8 micrometers to 10 micrometers range shows no damage for a speed up to 250 m/s with an exposure time up to 10 min, whereas the GeC rain erosion resistance shows no damage up to 235 m/s for the same exposure time. The transmission of each film is well correlated to its optical absorption at 10.6 micrometers . The GeC absorption can be reduced down to 40 cm-1 whereas the BP absorption stays around 220 cm-1 for sputtered films. So the compromise between the optical performance and the rain erosion resistance can be achieved by the use of GeC or BP films.

  6. Environmental change in the Limfjord, Denmark (ca 7500-1500 cal yrs BP): a multiproxy study

    NASA Astrophysics Data System (ADS)

    Lewis, Jonathan P.; Ryves, David B.; Rasmussen, Peter; Knudsen, Karen L.; Petersen, Kaj S.; Olsen, Jesper; Leng, Melanie J.; Kristensen, Peter; McGowan, Suzanne; Philippsen, Bente

    2013-10-01

    The Limfjord region of northern Jutland, Denmark, supports a rich archaeological record dating back to the Mesolithic, which documents long-term change in human practices and utilisation of marine resources since approximately 7500 BP. The presence and availability of marine resources in the Limfjord is sensitively regulated by environmental parameters such as salinity, sedimentary regime, nutrient status and primary productivity, but long-term changes in these parameters are currently poorly understood. In this study a multiproxy approach (including sedimentary parameters, diatoms, molluscs, foraminifera, sedimentary pigments, C and O stable isotopes and plant macrofossils) has been adopted to assess environmental change over the period ca 7500-1500 cal yrs BP at Kilen, a coastal fjord (before AD 1856) situated in the Western Limfjord. A diatom-based salinity transfer function based on a pan-Baltic training set has been applied to the fossil diatom dataset for quantitative assessment of salinity change over the study period. This study demonstrates that large-scale shifts in salinity are a common feature of the Limfjord's long-term history and are driven by the level of connection with the North Sea and the Skagerrak respectively, which in turn is likely driven by the complex interplay between climate, sea-level change, current velocity and rates of erosion/sedimentary accretion. Three shifts in state at Kilen are identified over the study period: a deep, periodically stratified fjord with medium-high salinity (and high productivity) between ca 7500-5000 BP, followed by a gradual transition to a shallow benthic system with more oceanic conditions (i.e. higher salinity, lower productivity, slower sedimentary accumulation rate and poorer fossil preservation) after ca 5000 BP and no stratification after ca 4400 BP, and lastly, within this shallow phase, an abrupt shift to brackish conditions around 2000 BP. Environmental-societal interactions are discussed on the

  7. The structural basis of modified nucleosome recognition by 53BP1.

    PubMed

    Wilson, Marcus D; Benlekbir, Samir; Fradet-Turcotte, Amélie; Sherker, Alana; Julien, Jean-Philippe; McEwan, Andrea; Noordermeer, Sylvie M; Sicheri, Frank; Rubinstein, John L; Durocher, Daniel

    2016-08-01

    DNA double-strand breaks (DSBs) elicit a histone modification cascade that controls DNA repair. This pathway involves the sequential ubiquitination of histones H1 and H2A by the E3 ubiquitin ligases RNF8 and RNF168, respectively. RNF168 ubiquitinates H2A on lysine 13 and lysine 15 (refs 7, 8) (yielding H2AK13ub and H2AK15ub, respectively), an event that triggers the recruitment of 53BP1 (also known as TP53BP1) to chromatin flanking DSBs. 53BP1 binds specifically to H2AK15ub-containing nucleosomes through a peptide segment termed the ubiquitination-dependent recruitment motif (UDR), which requires the simultaneous engagement of histone H4 lysine 20 dimethylation (H4K20me2) by its tandem Tudor domain. How 53BP1 interacts with these two histone marks in the nucleosomal context, how it recognizes ubiquitin, and how it discriminates between H2AK13ub and H2AK15ub is unknown. Here we present the electron cryomicroscopy (cryo-EM) structure of a dimerized human 53BP1 fragment bound to a H4K20me2-containing and H2AK15ub-containing nucleosome core particle (NCP-ubme) at 4.5 Å resolution. The structure reveals that H4K20me2 and H2AK15ub recognition involves intimate contacts with multiple nucleosomal elements including the acidic patch. Ubiquitin recognition by 53BP1 is unusual and involves the sandwiching of the UDR segment between ubiquitin and the NCP surface. The selectivity for H2AK15ub is imparted by two arginine fingers in the H2A amino-terminal tail, which straddle the nucleosomal DNA and serve to position ubiquitin over the NCP-bound UDR segment. The structure of the complex between NCP-ubme and 53BP1 reveals the basis of 53BP1 recruitment to DSB sites and illuminates how combinations of histone marks and nucleosomal elements cooperate to produce highly specific chromatin responses, such as those elicited following chromosome breaks. PMID:27462807

  8. NotCal04 - Comparison / Calibration 14C records 26-50 cal kBP

    SciTech Connect

    der Plicht, J v; Beck, J; Bard, E; Baille, M

    2004-11-11

    The radiocarbon calibration curve, IntCal04, extends back to 26 cal kBP. While several high resolution records exist beyond this limit, these data sets exhibit discrepancies one to another of up to several millennia. As a result, no calibration curve for the time range 26-50 cal kBP can be recommended as yet, but in this paper the IntCal04 working group compares the available data sets and offers a discussion of the information that they hold.

  9. Mitochondrial intergenic COII/tRNA(Lys) 9-bp deletion, a biomarker for hepatocellular carcinoma?

    PubMed

    Ren, Weihua; Li, Yawei; Li, Rui; Feng, Hongbo; Wu, Shuangting; Mao, Yuhui; Huang, Lei

    2016-07-01

    The COII/tRNA(Lys) intergenic 9-bp deletion is one of the most commonly studied human mitochondrial DNA (mtDNA) polymorphisms. It consists of the loss of one of two tandemly repeated copies of the sequence CCCCCTCTA from a non-coding region located between cytochrome oxidase II (COII) and tRNA(Lys) gene. Most recently, case-control studies have shown a positive association between this deletion with hepatocellular cancer. In this study, we first performed a detailed analysis between this deletion and clinical diseases; moreover, we took the phylogenetic approach to examine the pathogenicity status of 9-bp deletion. PMID:26017042

  10. Placement of the GaBP ring system in the banded gastric bypass operation.

    PubMed

    Fobi, Mathias A L

    2005-09-01

    Currently, bariatric surgeons fashion the band or ring reinforcement prosthesis, to control the stoma in the vertical banded gastroplasty and gastric bypass operations for morbid obesity. To meet this need, the GaBP Ring system has been developed in various sizes, and consists of 4 main parts to provide a means for inserting a ring around the gastric pouch in the banded gastric bypass or the vertical banded gastroplasty. The pre-manufactured and sterilized device provides for better standardization and quality control than individually surgeon-fashioned devices. The GaBP Ring system is described, and the technique of placement and the pertinent initial clinical results are presented. PMID:16197796

  11. Agriculture facilitated permanent human occupation of the Tibetan Plateau after 3600 B.P.

    PubMed

    Chen, F H; Dong, G H; Zhang, D J; Liu, X Y; Jia, X; An, C B; Ma, M M; Xie, Y W; Barton, L; Ren, X Y; Zhao, Z J; Wu, X H; Jones, M K

    2015-01-16

    Our understanding of when and how humans adapted to living on the Tibetan Plateau at altitudes above 2000 to 3000 meters has been constrained by a paucity of archaeological data. Here we report data sets from the northeastern Tibetan Plateau indicating that the first villages were established only by 5200 calendar years before the present (cal yr B.P.). Using these data, we tested the hypothesis that a novel agropastoral economy facilitated year-round living at higher altitudes since 3600 cal yr B.P. This successful subsistence strategy facilitated the adaptation of farmers-herders to the challenges of global temperature decline during the late Holocene. PMID:25593179

  12. Solution NMR Structure of the Ca2+-bound N-terminal Domain of CaBP7

    PubMed Central

    McCue, Hannah V.; Patel, Pryank; Herbert, Andrew P.; Lian, Lu-Yun; Burgoyne, Robert D.; Haynes, Lee P.

    2012-01-01

    Calcium-binding protein 7 (CaBP7) is a member of the calmodulin (CaM) superfamily that harbors two high affinity EF-hand motifs and a C-terminal transmembrane domain. CaBP7 has been previously shown to interact with and modulate phosphatidylinositol 4-kinase III-β (PI4KIIIβ) activity in in vitro assays and affects vesicle transport in neurons when overexpressed. Here we show that the N-terminal domain (NTD) of CaBP7 is sufficient to mediate the interaction of CaBP7 with PI4KIIIβ. CaBP7 NTD encompasses the two high affinity Ca2+ binding sites, and structural characterization through multiangle light scattering, circular dichroism, and NMR reveals unique properties for this domain. CaBP7 NTD binds specifically to Ca2+ but not Mg2+ and undergoes significant conformational changes in both secondary and tertiary structure upon Ca2+ binding. The Ca2+-bound form of CaBP7 NTD is monomeric and exhibits an open conformation similar to that of CaM. Ca2+-bound CaBP7 NTD has a solvent-exposed hydrophobic surface that is more expansive than observed in CaM or CaBP1. Within this hydrophobic pocket, there is a significant reduction in the number of methionine residues that are conserved in CaM and CaBP1 and shown to be important for target recognition. In CaBP7 NTD, these residues are replaced with isoleucine and leucine residues with branched side chains that are intrinsically more rigid than the flexible methionine side chain. We propose that these differences in surface hydrophobicity, charge, and methionine content may be important in determining highly specific interactions of CaBP7 with target proteins, such as PI4KIIIβ. PMID:22989873

  13. Synthesis of n-type boron phosphide films and formation of Schottky diode: Al/n-BP/Sb

    NASA Astrophysics Data System (ADS)

    Dalui, S.; Pal, A. K.

    2008-03-01

    Phosphorous rich BP in thin film form was deposited onto fused silica substrates by co-evaporating boron (99.99%) and phosphorous (99.995%) from a tantalum boat and indirectly heated alumina crucible, respectively. Schottky diode structures for n-type BP (Al/n-BP/Sb) were fabricated out of these films. Corresponding current-voltage and capacitance-voltage characteristics of the Schottky diodes were recorded and analyzed in the light of the existing theories.

  14. Removal of 2-ClBP from soil-water system using activated carbon supported nanoscale zerovalent iron.

    PubMed

    Zhang, Wei; Yu, Tian; Han, Xiaolin; Ying, Weichi

    2016-09-01

    We explored the feasibility and removal mechanism of removing 2-chlorobiphenyl (2-ClBP) from soil-water system using granular activated carbon (GAC) impregnated with nanoscale zerovalent iron (reactive activated carbon or RAC). The RAC samples were successfully synthesized by the liquid precipitation method. The mesoporous GAC based RAC with low iron content (1.32%) exhibited higher 2-ClBP removal efficiency (54.6%) in the water phase. The result of Langmuir-Hinshelwood kinetic model implied that the different molecular structures between 2-ClBP and trichloroethylene (TCE) resulted in more difference in dechlorination reaction rates on RAC than adsorption capacities. Compared to removing 2-ClBP in the water phase, RAC removed the 2-ClBP more slowly in the soil phase due to the significant external mass transfer resistance. However, in the soil phase, a better removal capacity of RAC was observed than its base GAC because the chemical dechlorination played a more important role in total removal process for 2-ClBP. This important result verified the effectiveness of RAC for removing 2-ClBP in the soil phase. Although reducing the total RAC removal rate of 2-ClBP, soil organic matter (SOM), especially the soft carbon, also served as an electron transfer medium to promote the dechlorination of 2-ClBP in the long term. PMID:27593281

  15. TopBP1 is required at mitosis to reduce transmission of DNA damage to G1 daughter cells

    PubMed Central

    Pedersen, Rune Troelsgaard; Kruse, Thomas; Nilsson, Jakob

    2015-01-01

    Genome integrity is critically dependent on timely DNA replication and accurate chromosome segregation. Replication stress delays replication into G2/M, which in turn impairs proper chromosome segregation and inflicts DNA damage on the daughter cells. Here we show that TopBP1 forms foci upon mitotic entry. In early mitosis, TopBP1 marks sites of and promotes unscheduled DNA synthesis. Moreover, TopBP1 is required for focus formation of the structure-selective nuclease and scaffold protein SLX4 in mitosis. Persistent TopBP1 foci transition into 53BP1 nuclear bodies (NBs) in G1 and precise temporal depletion of TopBP1 just before mitotic entry induced formation of 53BP1 NBs in the next cell cycle, showing that TopBP1 acts to reduce transmission of DNA damage to G1 daughter cells. Based on these results, we propose that TopBP1 maintains genome integrity in mitosis by controlling chromatin recruitment of SLX4 and by facilitating unscheduled DNA synthesis. PMID:26283799

  16. SCYL1BP1 modulates neurite outgrowth and regeneration by regulating the Mdm2/p53 pathway

    PubMed Central

    Liu, Yonghua; Chen, Ying; Lu, Xiang; Wang, Youhua; Duan, Yinong; Cheng, Chun; Shen, Aiguo

    2012-01-01

    SCY1-like 1–binding protein 1 (SCYL1BP1) is a newly identified transcriptional activator domain containing a protein with many unknown biological functions. Recently emerging evidence has revealed that it is a novel regulator of the p53 pathway, which is required for neurite outgrowth and regeneration. Here we present evidence that SCYL1BP1 inhibits nerve growth factor–mediated neurite outgrowth in PC12 cells and affects morphogenesis of primary cortical neurons by strongly decreasing the p53 protein level in vitro, all of which depends on SCYL1BP1's transcriptional activator domain. Exogenous p53 rescues neurite outgrowth and neuronal morphogenesis defects caused by SCYL1BP1. Furthermore, SCYL1BP1 can directly induce Mdm2 transcription, whereas inhibiting the function of Mdm2 by specific small interfering RNAs results in partial rescue of neurite outgrowth and neuronal morphogenesis defects induced by SCYL1BP1. In vivo experiments show that SCYL1BP1 can also depress axonal regeneration, whereas inhibiting the function of SCYL1BP1 by specific short hairpin RNA enhances it. Taken together, these data strongly suggested that SCYL1BP1 is a novel transcriptional activator in neurite outgrowth by directly modulating the Mdm2/p53-dependent pathway, which might play an important role in CNS development and axonal regeneration after injury. PMID:23051735

  17. Genome-wide profiles of CtBP link metabolism with genome stability and epithelial reprogramming in breast cancer

    PubMed Central

    Di, Li-Jun; Byun, Jung S.; Wong, Madeline M.; Wakano, Clay; Taylor, Tara; Bilke, Sven; Baek, Songjoon; Hunter, Kent; Yang, Howard; Lee, Maxwell; Zvosec, Celia; Khramtsova, Galina; Cheng, Fan; Perou, Charles M.; Miller, C. Ryan; Raab, Rachel; Olopade, Olufunmilayo I.; Gardner, Kevin

    2013-01-01

    The C-terminal binding protein (CtBP) is a NADH-dependent transcriptional repressor that links carbohydrate metabolism to epigenetic regulation by recruiting diverse histone modifying complexes to chromatin. Here, global profiling of CtBP in breast cancer cells reveals that it drives epithelial to mesenchymal transition, stem cell pathways, and genome instability. CtBP expression induces mesenchymal and stem cell-like features while CtBP depletion or caloric restriction reverses gene repression and increases DNA repair. Multiple members of the CtBP-targeted gene network are selectively down-regulated in aggressive breast cancer subtypes. Differential expression of CtBP-targeted genes predicts poor clinical outcome in breast cancer patients, and elevated levels of CtBP in patient tumors predict shorter median survival. Finally, both CtBP promoter targeting and gene repression can be reversed by small molecule inhibition. These findings define broad roles for CtBP in breast cancer biology and suggest novel chromatin-based strategies for pharmacologic and metabolic intervention in cancer. PMID:23385593

  18. Investigation of crystal structure and associated electronic structure of Sr 6BP 5O 20

    NASA Astrophysics Data System (ADS)

    Ehrenberg, Helmut; Laubach, Sonja; Schmidt, P. C.; McSweeney, R.; Knapp, M.; Mishra, K. C.

    2006-04-01

    Strontium borophosphate phosphate (Sr 6BP 5O 20, SrBP), activated by divalent europium ions is a bluish-green phosphor emitting in a broad band with the emission peak near 480 nm. In this paper, we report the crystal structure of SrBP determined from an analysis of the X-ray diffraction pattern of a prismatic single crystal (size 60 μm×50 μm×40 μm). This crystal was chosen from undoped phosphor powder samples prepared for this purpose by solid-state reaction. SrBP is observed to crystallize in a body-centered tetragonal lattice with the lattice parameters a=9.7895(7) Å and c=19.032(3) Å, the associated space group being I4¯c2 (space group 120). Using the structural data from this study, we have also calculated its electronic structure using the augmented spherical wave method and the local density approximation (LDA). We show the ordering of the electronic states by the density of states (DOS) and the partial DOS plots. The LDA gives a direct optical band gap at the Γ point of about 5 eV. The significance of the crystal structure and associated electronic structure is discussed with respect to maintenance of this phosphor in Hg-discharge lamps.

  19. 78 FR 76851 - Agency Information Collection Activities: BP Regulations Pertaining to Customs Brokers

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-19

    ... SECURITY U.S. Customs and Border Protection Agency Information Collection Activities: BP Regulations Pertaining to Customs Brokers AGENCY: U.S. Customs and Border Protection (CBP), Department of Homeland... requirement concerning the CBP Regulations Pertaining to Customs Brokers (19 CFR Part 111). This request...

  20. Characterization of the Particulate Emissions from the BP Deepwater Horizon Surface Oil Burns

    EPA Science Inventory

    Opportunistic particle samples were gathered from the sail of a tethered aerostat during at-sea plume sampling of the purposely-burned surface oil during the BP Deepwater Horizon disaster in the Gulf of Mexico. Particles were analyzed for polycyclic aromatic hydrocarbons (PAHs),...

  1. [Estimation of Winter Wheat Biomass Using Visible Spectral and BP Based Artificial Neural Networks].

    PubMed

    Cui, Ri-xian; Liu, Ya-dong; Fu, Jin-dong

    2015-09-01

    The objective of this study was to evaluate the feasibility of using color digital image analysis and back propagation (BP) based artificial neural networks (ANN) method to estimate above ground biomass at the canopy level of winter wheat field. Digital color images of winter wheat canopies grown under six levels of nitrogen treatments were taken with a digital camera for four times during the elongation stage and at the same time wheat plants were sampled to measure above ground biomass. Canopy cover (CC) and 10 color indices were calculated from winter wheat canopy images by using image analysis program (developed in Microsoft Visual Basic). Correlation analysis was carried out to identify the relationship between CC, 10 color indices and winter wheat above ground biomass. Stepwise multiple linear regression and BP based ANN methods were used to establish the models to estimate winter wheat above ground biomass. The results showed that CC, and two color indices had a significant cor- relation with above ground biomass. CC revealed the highest correlation with winter wheat above ground biomass. Stepwise multiple linear regression model constituting CC and color indices of NDI and b, and BP based ANN model with four variables (CC, g, b and NDI) for input was constructed to estimate winter wheat above ground biomass. The validation results indicate that the model using BP based ANN method has a better performance with higher R2 (0.903) and lower RMSE (61.706) and RRMSE (18.876) in comparation with the stepwise regression model. PMID:26669174

  2. SH3BP2 is an activator of NFAT activity and osteoclastogenesis

    SciTech Connect

    Lietman, Steven A. Yin Lihong; Levine, Michael A.

    2008-07-11

    Heterozygous activating mutations in exon 9 of SH3BP2 have been found in most patients with cherubism, an unusual genetic syndrome characterized by excessive remodeling of the mandible and maxilla due to spontaneous and excessive osteoclastic bone resorption. Osteoclasts differentiate after binding of sRANKL to RANK induces a number of downstream signaling effects, including activation of the calcineurin/NFAT (nuclear factor of activated T cells) pathway. Here, we have investigated the functional significance of SH3BP2 protein on osteoclastogenesis in the presence of sRANKL. Our results indicate that SH3BP2 both increases nuclear NFATc1 in sRANKL treated RAW 264.7 preosteoclast cells and enhances expression of tartrate resistant acid phosphatase (TRAP), a specific marker of osteoclast differentiation. Moreover, overexpression of SH3BP2 in RAW 264.7 cells potentiates sRANKL-stimulated phosphorylation of PLC{gamma}1 and 2, thus providing a mechanistic pathway for the rapid translocation of NFATc1 into the nucleus and increased osteoclastogenesis in cherubism.

  3. Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate

    PubMed Central

    Sue, David; Hakovirta, Janetta; Loparev, Vladimir N.; Knipe, Kristen; Sammons, Scott A.; Ranganathan-Ganakammal, Satishkumar; Changayil, Shankar; Srinivasamoorthy, Ganesh; Weil, Michael R.; Tatusov, Roman L.; Gee, Jay E.; Elrod, Mindy G.; Hoffmaster, Alex R.; Weigel, Linda M.

    2015-01-01

    Burkholderia pseudomallei strain Bp1651, a human isolate, is resistant to all clinically relevant antibiotics. We report here on the finished genome sequence assembly and annotation of the two chromosomes of this strain. This genome sequence may assist in understanding the mechanisms of antimicrobial resistance for this pathogenic species. PMID:26634765

  4. 2. ENVIRONMENT, FROM SOUTHEAST, SHOWING B&P INTERLOCKING TOWER, AUXILIARY INTERLOCKING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. ENVIRONMENT, FROM SOUTHEAST, SHOWING B&P INTERLOCKING TOWER, AUXILIARY INTERLOCKING BUILDING, AND POWER SUBSTATION - Baltimore & Potomac Interlocking Tower, Adjacent to AMTRAK railroad tracks in block bounded by Howard Street, Jones Falls Expressway, Maryland Avenue & Falls Road, Baltimore, Independent City, MD

  5. Inhibition of HIF-1{alpha} activity by BP-1 ameliorates adjuvant induced arthritis in rats

    SciTech Connect

    Shankar, J.; Thippegowda, P.B.; Kanum, S.A.

    2009-09-18

    Rheumatoid arthritis (RA) is a chronic inflammatory, angiogenic disease. Inflamed synovitis is a hallmark of RA which is hypoxic in nature. Vascular endothelial growth factor (VEGF), one of the key regulators of angiogenesis, is overexpressed in the pathogenesis of RA. VEGF expression is regulated by hypoxia-inducible factor-1{alpha} (HIF-1{alpha}), a master regulator of homeostasis which plays a pivotal role in hypoxia-induced angiogenesis. In this study we show that synthetic benzophenone analogue, 2-benzoyl-phenoxy acetamide (BP-1) can act as a novel anti-arthritic agent in an experimental adjuvant induced arthritis (AIA) rat model by targeting VEGF and HIF-1{alpha}. BP-1 administered hypoxic endothelial cells and arthritic animals clearly showed down regulation of VEGF expression. Further, BP-1 inhibits nuclear translocation of HIF-1{alpha}, which in turn suppresses transcription of the VEGF gene. These results suggest a further possible clinical application of the BP-1 derivative as an anti-arthritic agent in association with conventional chemotherapeutic agents.

  6. FOXO/4E-BP Signaling in Drosophila Muscles Regulates Organism-wide Proteostasis During Aging

    PubMed Central

    Demontis, Fabio; Perrimon, Norbert

    2011-01-01

    SUMMARY The progressive loss of muscle strength during aging is a common degenerative event of unclear pathogenesis. Although muscle functional decline precedes age-related changes in other tissues, its contribution to systemic aging is unknown. Here, we show that muscle aging is characterized in Drosophila by the progressive accumulation of protein aggregates that associate with impaired muscle function. The transcription factor FOXO and its target 4E-BP remove damaged proteins at least in part via the autophagy/lysosome system, while foxo mutants have dysfunctional proteostasis. Both FOXO and 4E-BP delay muscle functional decay and extend lifespan. Moreover, FOXO/4E-BP signaling in muscles decreases feeding behavior and the release of Insulin from producing cells, which in turn delays the age-related accumulation of protein aggregates in other tissues. These findings reveal an organism-wide regulation of proteostasis in response to muscle aging, and a key role of FOXO/4E-BP signaling in the coordination of organismal and tissue aging. PMID:21111239

  7. Tests of simulated Gaia BP/RP spectra with LDS (Low Dispersion Spectroscopy) photographic sky surveys

    NASA Astrophysics Data System (ADS)

    Hudec, René; Hudec, Lukáš

    2011-12-01

    The LDS (Low Dispersion Spectroscopy) performed in various extended sky surveys with optical telescopes using objective prism and photographic plates offers an interesting opportunity to test simulated low-dispersion spectra for the Gaia BP/RP photometers and to compare them with real data, especially for objects with strong emission lines. We present a review of astrophysics with LDS performed in the past, as well as an overview of existing extended sky surveys (with photographic plates) providing LDS data. Some of them provide almost complete coverage of the northern or southern hemisphere (e.g. the Northern and Southern Mt Wilson - Michigan Hα surveys or the German La Paz Bolivia Southern Spectral Sky Survey). We show examples of these data and discuss a comparison of existing LDS plate data with expected/simulated Gaia BP/RP data. We show examples of real data for objects with very strong and wide emission features confirming that such features will be detectable with Gaia BP/RP. We also discuss the importance of Gaia RP/BP low-dispersion spectroscopy for astrophysical studies.

  8. 75 FR 60097 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-29

    ... oil spill and to develop options to guard against, and mitigate the impact of, any oil spills... mitigate the impact of, any oil spills associated with offshore drilling in the future. Tentative Agenda... National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling AGENCY: Department...

  9. 75 FR 69652 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-15

    ... oil spill and to develop options to guard against, and mitigate the impact of, any oil spills... mitigate the impact of, any oil spills associated with offshore drilling in the future. Tentative Agenda... National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling AGENCY: Department...

  10. 75 FR 29397 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-26

    ... options for guarding against, and mitigating the impact of, oil spills associated with offshore drilling... established the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling (the... with their ongoing activities in response to the oil spill, shall provide the Commission...

  11. The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured.

    PubMed

    Nardini, Marco; Svergun, Dmitri; Konarev, Peter V; Spanò, Stefania; Fasano, Mauro; Bracco, Chiara; Pesce, Alessandra; Donadini, Alessandra; Cericola, Claudia; Secundo, Francesco; Luini, Alberto; Corda, Daniela; Bolognesi, Martino

    2006-05-01

    C-terminal binding proteins (CtBPs) are moonlighting proteins involved in nuclear transcriptional corepression and in Golgi membrane tubule fission. Structural information on CtBPs is available for their substrate-binding domain, responsible for transcriptional repressor recognition/binding, and for the nucleotide-binding domain, involved in NAD(H)-binding and dimerization. On the contrary, little is known about the structure of CtBP C-terminal region ( approximately 90 residues), hosting sites for post-translational modifications. In the present communication we apply a combined approach based on bioinformatics, nuclear magnetic resonance, circular dichroism spectroscopy, and small-angle X-ray scattering, and we show that the CtBP C-terminal region is intrinsically unstructured in the full-length CtBP and in constructs lacking the substrate- and/or the nucleotide-binding domains. The flexible nature of this protein region, and its structural transitions, may be instrumental for CtBP recognition and binding to diverse molecular partners. PMID:16597837

  12. The discovery and taxonomic implications of a novel 41bp chloroplast DNA deletion in wild potatoes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A 241-bp chloroplast deletion in the intergenic region flanking the 3'end of the trnV-UAC gene has been shown to have major phylogenetic importance in determining the origin of the cultivated potato, as it characterizes most landrace populations from lowland Chile and putative wild species in Bolivi...

  13. BEARDSLEY AND PIPER (B&P) CORE BLOWING MACHINE. VIRGINIA BLAKELY MANUALLY ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    BEARDSLEY AND PIPER (B&P) CORE BLOWING MACHINE. VIRGINIA BLAKELY MANUALLY FILLING SAND MAGAZINE THAT WILL ROTATE WITH THE CORE BOX, FILLING IT UNDER PRESSURE SIMILAR TO THE CORE MACHINE IN THE BACKGROUND. - Southern Ductile Casting Company, Core Making, 2217 Carolina Avenue, Bessemer, Jefferson County, AL

  14. Characterization of the Particulate Emissions from the BP Deepwell Horizon Spill Surface Oil Burns

    EPA Science Inventory

    A particle sample gathered from the plume of the purposely-burned surface oil during the BP Deepwater Horizon disaster in the Gulf of Mexico was analyzed for polycyclic aromatic hydrocarbons (PAHs), organic acids, organic carbon (OC), elemental carbon (EC), metals, and chloro-org...

  15. RanBP9 Overexpression Accelerates Loss of Dendritic Spines in a Mouse Model of Alzheimer's Disease

    PubMed Central

    Wang, Ruizhi; Palavicini, Juan Pablo; Wang, Hongjie; Maiti, Panchanan; Bianchi, Elisabetta; Xu, Shaohua; Lloyd, BN; Dawson-Scully, Ken; Kang, David E; Lakshmana, Madepalli K.

    2014-01-01

    We previously demonstrated that RanBP9 overexpression increased Aβ generation and amyloid plaque burden, subsequently leading to robust reductions in the levels of several synaptic proteins as well as deficits in the learning and memory skills in a mouse model of Alzheimer's disease (AD). In the present study, we found striking reduction of spinophilin-immunoreactive puncta (52%, p<0.001) and spinophilin area (62.5%, p<0.001) in the primary cortical neurons derived from RanBP9 transgenic mice (RanBP9-Tg) compared to wild-type (WT) neurons. Similar results were confirmed in WT cortical neurons transfected with EGFP-RanBP9. At 6-months of age, the total spine density in the cortex of RanBP9 single transgenic, APΔE9 double transgenic and APΔE9/RanBP9 triple transgenic mice were similar to WT mice. However, in the hippocampus the spine density was significantly reduced (27%, p<0.05) in the triple transgenic mice compared to WT mice due to reduced number of thin spines (33%, p<0.05) and mushroom spines (22%, p<0.05). This suggests that RanBP9 overexpression in the APΔE9 mice accelerates loss of spines and that hippocampus is more vulnerable. At 12-months of age, cortex showed significant reductions in total spine density in the RanBP9 (22%, p<0.05), APΔE9 (19%, p<0.05) and APΔE9/RanBP9 (33%, p<0.01) mice compared to WT controls due to reductions in mushroom and thin spines. Similarly, in the hippocampus the total spine density was reduced in the RanBP9 (23%, p<0.05), APΔE9 (26%, p<0.05) and APΔE9/RanBP9 (39%, p<0.01) mice due to reductions in thin and mushroom spines. Most importantly, RanBP9 overexpression in the APΔE9 mice further exacerbated the reductions in spine density in both the cortex (14%, p<0.05) and the hippocampus (16%, p<0.05). Because dendritic spines are considered physical traces of memory, loss of spines due to RanBP9 provided the physical basis for the learning and memory deficits. Since RanBP9 protein levels are increased in AD brains, RanBP

  16. RanBP9 overexpression accelerates loss of dendritic spines in a mouse model of Alzheimer's disease.

    PubMed

    Wang, Ruizhi; Palavicini, Juan Pablo; Wang, Hongjie; Maiti, Panchanan; Bianchi, Elisabetta; Xu, Shaohua; Lloyd, B N; Dawson-Scully, Ken; Kang, David E; Lakshmana, Madepalli K

    2014-09-01

    We previously demonstrated that RanBP9 overexpression increased Aβ generation and amyloid plaque burden, subsequently leading to robust reductions in the levels of several synaptic proteins as well as deficits in the learning and memory skills in a mouse model of Alzheimer's disease (AD). In the present study, we found striking reduction of spinophilin-immunoreactive puncta (52%, p<0.001) and spinophilin area (62.5%, p<0.001) in the primary cortical neurons derived from RanBP9 transgenic mice (RanBP9-Tg) compared to wild-type (WT) neurons. Similar results were confirmed in WT cortical neurons transfected with EGFP-RanBP9. At 6-months of age, the total spine density in the cortex of RanBP9 single transgenic, APΔE9 double transgenic and APΔE9/RanBP9 triple transgenic mice was similar to WT mice. However, in the hippocampus the spine density was significantly reduced (27%, p<0.05) in the triple transgenic mice compared to WT mice due to reduced number of thin spines (33%, p<0.05) and mushroom spines (22%, p<0.05). This suggests that RanBP9 overexpression in the APΔE9 mice accelerates loss of spines and that the hippocampus is more vulnerable. At 12-months of age, the cortex showed significant reductions in total spine density in the RanBP9 (22%, p<0.05), APΔE9 (19%, p<0.05) and APΔE9/RanBP9 (33%, p<0.01) mice compared to WT controls due to reductions in mushroom and thin spines. Similarly, in the hippocampus the total spine density was reduced in the RanBP9 (23%, p<0.05), APΔE9 (26%, p<0.05) and APΔE9/RanBP9 (39%, p<0.01) mice due to reductions in thin and mushroom spines. Most importantly, RanBP9 overexpression in the APΔE9 mice further exacerbated the reductions in spine density in both the cortex (14%, p<0.05) and the hippocampus (16%, p<0.05). Because dendritic spines are considered physical traces of memory, loss of spines due to RanBP9 provided the physical basis for the learning and memory deficits. Since RanBP9 protein levels are increased in AD

  17. Constitutive expression of transgenes encoding derivatives of the synthetic antimicrobial peptide BP100: impact on rice host plant fitness

    PubMed Central

    2012-01-01

    Background The Biopeptide BP100 is a synthetic and strongly cationic α-helical undecapeptide with high, specific antibacterial activity against economically important plant-pathogenic bacteria, and very low toxicity. It was selected from a library of synthetic peptides, along with other peptides with activities against relevant bacterial and fungal species. Expression of the BP100 series of peptides in plants is of major interest to establish disease-resistant plants and facilitate molecular farming. Specific challenges were the small length, peptide degradation by plant proteases and toxicity to the host plant. Here we approached the expression of the BP100 peptide series in plants using BP100 as a proof-of-concept. Results Our design considered up to three tandemly arranged BP100 units and peptide accumulation in the endoplasmic reticulum (ER), analyzing five BP100 derivatives. The ER retention sequence did not reduce the antimicrobial activity of chemically synthesized BP100 derivatives, making this strategy possible. Transformation with sequences encoding BP100 derivatives (bp100der) was over ten-fold less efficient than that of the hygromycin phosphotransferase (hptII) transgene. The BP100 direct tandems did not show higher antimicrobial activity than BP100, and genetically modified (GM) plants constitutively expressing them were not viable. In contrast, inverted repeats of BP100, whether or not elongated with a portion of a natural antimicrobial peptide (AMP), had higher antimicrobial activity, and fertile GM rice lines constitutively expressing bp100der were produced. These GM lines had increased resistance to the pathogens Dickeya chrysanthemi and Fusarium verticillioides, and tolerance to oxidative stress, with agronomic performance comparable to untransformed lines. Conclusions Constitutive expression of transgenes encoding short cationic α-helical synthetic peptides can have a strong negative impact on rice fitness. However, GM plants expressing, for

  18. Drosophila Longevity Assurance Conferred by Reduced Insulin Receptor Substrate Chico Partially Requires d4eBP

    PubMed Central

    Bai, Hua; Post, Stephanie; Kang, Ping; Tatar, Marc

    2015-01-01

    Mutations of the insulin/IGF signaling (IIS) pathway extend Drosophila lifespan. Based on genetic epistasis analyses, this longevity assurance is attributed to downstream effects of the FOXO transcription factor. However, as reported FOXO accounts for only a portion of the observed longevity benefit, suggesting there are additional outputs of IIS to mediate aging. One candidate is target of rapamycin complex 1 (TORC1). Reduced TORC1 activity is reported to slow aging, whereas reduced IIS is reported to repress TORC1 activity. The eukaryotic translation initiation factor 4E binding protein (4E-BP) is repressed by TORC1, and activated 4E-BP is reported to increase Drosophila lifespan. Here we use genetic epistasis analyses to test whether longevity assurance mutants of chico, the Drosophila insulin receptor substrate homolog, require Drosophila d4eBP to slow aging. In chico heterozygotes, which are robustly long-lived, d4eBP is required but not sufficient to slow aging. Remarkably, d4eBP is not required or sufficient for chico homozygotes to extend longevity. Likewise, chico heterozygote females partially require d4eBP to preserve age-dependent locomotion, and both chico genotypes require d4eBP to improve stress-resistance. Reproduction and most measures of growth affected by either chico genotype are always independent of d4eBP. In females, chico heterozygotes paradoxically produce more rather than less phosphorylated 4E-BP (p4E-BP). Altered IRS function within the IIS pathway of Drosophila appears to have partial, conditional capacity to regulate aging through an unconventional interaction with 4E-BP. PMID:26252766

  19. Negative control of circadian clock regulator E4BP4 by casein kinase Iepsilon-mediated phosphorylation.

    PubMed

    Doi, Masao; Okano, Toshiyuki; Yujnovsky, Irene; Sassone-Corsi, Paolo; Fukada, Yoshitaka

    2004-06-01

    Light-dependent transcriptional regulation of clock genes is a crucial step in the entrainment of the circadian clock. E4bp4 is a light-inducible gene in the chick pineal gland, and it encodes a bZIP protein that represses transcription of cPer2, a chick pineal clock gene. Here, we demonstrate that prolonged light period-dependent accumulation of E4BP4 protein is temporally coordinated with a delay of the rising phase of cPer2 in the morning. E4BP4 was phosphorylated progressively and then disappeared in parallel with induced cPer2 expression. Characterization of E4BP4 revealed Ser182, a phosphoacceptor site located at the amino-terminal border of the Ser/Thr cluster, which forms the phosphorylation motifs for casein kinase 1epsilon (CK1epsilon). CK1epsilon physically associated with E4BP4 and phosphorylated it. CK1epsilon-catalyzed phosphorylation of E4BP4 resulted in proteasomal proteolysis-dependent decrease of E4BP4 levels, while E4BP4 nuclear accumulation was attenuated by CK1epsilon in a kinase activity-independent manner. CK1epsilon-mediated posttranslational regulation was accompanied by reduction of the transcriptional repression executed by E4BP4. These results not only demonstrate a phosphorylation-dependent regulatory mechanism for E4BP4 function but also highlight the role of CK1epsilon as a negative regulator for E4BP4-mediated repression of cPer2. PMID:15182670

  20. The pressor effect of NO synthase inhibition correlates to pre-existing systolic BP in the rat.

    PubMed

    Elayan, Hamzeh H; Kennedy, Brian P; Ziegler, Michael G

    2002-01-10

    A number of studies have found that the vasopressor effect of nitric oxide (NO) synthase inhibition is small following treatment with hypotensive agents but is enhanced after hypertensive agents, and have implicated NO in the mechanism of action of these drugs. We investigated the hypothesis that the rate of vascular NO synthesis is directly related to blood pressure. The vasopressor effect of 10 mg/kg of L-nitro-L-arginine methyl ester (L-NAME) was studied in relation to changes in BP induced by a variety of treatments in both pentobarbital sodium anesthetized and pithed rats. BP reductions were induced by blood withdrawal, surgery and pithing. BP increases were made by injecting 10 and 15 microg/kg boluses of phenylephrine or by injecting 5% albumin solution. Pithing decreased baseline BP and attenuated the vasopressor effect of L-NAME while phenylephrine increased both BP levels and the hypertensive effect of L-NAME. Volume expansion with 5% albumin solution increased both BP and the vasopressor effect of L-NAME. Both surgery (abdominal incision) and withdrawal of 1 ml blood reduced BP and attenuated the pressor effect of L-NAME. When the results of all these studies were combined, systolic BP was found to correlate strongly with the vasopressor effect of L-NAME (R2 = 0.73, P < 0.0001). Diastolic BP correlated less well with L-NAME (R2 = 0.36, P < 0.0003). The results suggest that shear stress generated by blood flow during the systole releases NO, and lowers BP. The pressor effect of NO synthase inhibition is closely related to pre-existing systolic BP. PMID:11871783

  1. The Nedd4-binding partner 1 (N4BP1) protein is an inhibitor of the E3 ligase Itch.

    PubMed

    Oberst, Andrew; Malatesta, Martina; Aqeilan, Rami I; Rossi, Mario; Salomoni, Paolo; Murillas, Rodolfo; Sharma, Prashant; Kuehn, Michael R; Oren, Moshe; Croce, Carlo M; Bernassola, Francesca; Melino, Gerry

    2007-07-01

    Nedd4-binding partner-1 (N4BP1) has been identified as a protein interactor and a substrate of the homologous to E6AP C terminus (HECT) domain-containing E3 ubiquitin-protein ligase (E3), Nedd4. Here, we describe a previously unrecognized functional interaction between N4BP1 and Itch, a Nedd4 structurally related E3, which contains four WW domains, conferring substrate-binding activity. We show that N4BP1 association with the second WW domain (WW2) of Itch interferes with E3 binding to its substrates. In particular, we found that N4BP1 and p73 alpha, a target of Itch-mediated ubiquitin/proteasome proteolysis, share the same binding site. By competing with p73 alpha for binding to the WW2 domain, N4BP1 reduces the ability of Itch to recruit and ubiquitylate p73 alpha and inhibits Itch autoubiquitylation activity both in in vitro and in vivo ubiquitylation assays. Similarly, both c-Jun and p63 polyubiquitylation by Itch are inhibited by N4BP1. As a consequence, genetic and RNAi knockdown of N4BP1 diminish the steady-state protein levels and significantly impair the transcriptional activity of Itch substrates. Notably, stress-induced induction of c-Jun was impaired in N4BP1(-/-) cells. These results demonstrate that N4BP1 functions as a negative regulator of Itch. In addition, because inhibition of Itch by N4BP1 results in the stabilization of crucial cell death regulators such as p73 alpha and c-Jun, it is conceivable that N4BP1 may have a role in regulating tumor progression and the response of cancer cells to chemotherapy. PMID:17592138

  2. Rasputin, more promiscuous than ever: a review of G3BP.

    PubMed

    Irvine, Katharine; Stirling, Renee; Hume, David; Kennedy, Derek

    2004-12-01

    In this review, we highlight what G3BP's domain structure initially suggested; that G3BPs are "scaffolding" proteins linking signal transduction to RNA metabolism. Whilst it is most attractive to hypothesise about G3BP's role in signalling to mRNA metabolism, it is not known whether all G3BP functions impinge on their RNA-binding activities, so any theories are naturally subject to this qualification. It is hypothesised that, in coordination with an array of other proteins, G3BP, in a phosphorylation-dependent manner, is involved in the post-transcriptional regulation of a subset of mRNAs, at least some of which are in common with those regulated by Hu proteins. These transcripts, partially controlled at the post-transcriptional level by G3BPs, code for proteins important in transcription (e.g. c-Myc) and cytoskeletal arrangement (e.g. Tau), amongst other as yet undetermined pathways. The subtle differences between G3BP family members could dictate binding to a variety of signalling proteins, so each of the G3BPs may participate in different, though possibly related mRNPs, which are assembled in response to different stimuli. The combinatorial nature of the mRNP complex offers a powerful means of regulating gene expression, beyond that provided by a simple mRNA sequence. The ways in which mRNP flexibility and specificity may be harnessed to coordinate gene expression of functionally or structurally related mRNAs are not yet fully appreciated. Characterising mRNP composition and the function/s of mRNP components, such as the G3BPs, will aid in the understanding of how post-transcriptional mechanisms contribute to the global regulation of gene expression. PMID:15602692

  3. Dynamic Response of Mycobacterium vanbaalenii PYR-1 to BP Deepwater Horizon Crude Oil.

    PubMed

    Kim, Seong-Jae; Kweon, Ohgew; Sutherland, John B; Kim, Hyun-Lee; Jones, Richard C; Burback, Brian L; Graves, Steven W; Psurny, Edward; Cerniglia, Carl E

    2015-07-01

    We investigated the response of the hydrocarbon-degrading Mycobacterium vanbaalenii PYR-1 to crude oil from the BP Deepwater Horizon (DWH) spill, using substrate depletion, genomic, and proteome analyses. M. vanbaalenii PYR-1 cultures were incubated with BP DWH crude oil, and proteomes and degradation of alkanes and polycyclic aromatic hydrocarbons (PAHs) were analyzed at four time points over 30 days. Gas chromatography-mass spectrometry (GC-MS) analysis showed a chain length-dependent pattern of alkane degradation, with C12 and C13 being degraded at the highest rate, although alkanes up to C28 were degraded. Whereas phenanthrene and pyrene were completely degraded, a significantly smaller amount of fluoranthene was degraded. Proteome analysis identified 3,948 proteins, with 876 and 1,859 proteins up- and downregulated, respectively. We observed dynamic changes in protein expression during BP crude oil incubation, including transcriptional factors and transporters potentially involved in adaptation to crude oil. The proteome also provided a molecular basis for the metabolism of the aliphatic and aromatic hydrocarbon components in the BP DWH crude oil, which included upregulation of AlkB alkane hydroxylase and an expression pattern of PAH-metabolizing enzymes different from those in previous proteome expression studies of strain PYR-1 incubated with pure or mixed PAHs, particularly the ring-hydroxylating oxygenase (RHO) responsible for the initial oxidation of aromatic hydrocarbons. Based on these results, a comprehensive cellular response of M. vanbaalenii PYR-1 to BP crude oil was proposed. This study increases our fundamental understanding of the impact of crude oil on the cellular response of bacteria and provides data needed for development of practical bioremediation applications. PMID:25888169

  4. Dynamic Response of Mycobacterium vanbaalenii PYR-1 to BP Deepwater Horizon Crude Oil

    PubMed Central

    Kim, Seong-Jae; Kweon, Ohgew; Sutherland, John B.; Kim, Hyun-Lee; Jones, Richard C.; Burback, Brian L.; Graves, Steven W.; Psurny, Edward

    2015-01-01

    We investigated the response of the hydrocarbon-degrading Mycobacterium vanbaalenii PYR-1 to crude oil from the BP Deepwater Horizon (DWH) spill, using substrate depletion, genomic, and proteome analyses. M. vanbaalenii PYR-1 cultures were incubated with BP DWH crude oil, and proteomes and degradation of alkanes and polycyclic aromatic hydrocarbons (PAHs) were analyzed at four time points over 30 days. Gas chromatography-mass spectrometry (GC-MS) analysis showed a chain length-dependent pattern of alkane degradation, with C12 and C13 being degraded at the highest rate, although alkanes up to C28 were degraded. Whereas phenanthrene and pyrene were completely degraded, a significantly smaller amount of fluoranthene was degraded. Proteome analysis identified 3,948 proteins, with 876 and 1,859 proteins up- and downregulated, respectively. We observed dynamic changes in protein expression during BP crude oil incubation, including transcriptional factors and transporters potentially involved in adaptation to crude oil. The proteome also provided a molecular basis for the metabolism of the aliphatic and aromatic hydrocarbon components in the BP DWH crude oil, which included upregulation of AlkB alkane hydroxylase and an expression pattern of PAH-metabolizing enzymes different from those in previous proteome expression studies of strain PYR-1 incubated with pure or mixed PAHs, particularly the ring-hydroxylating oxygenase (RHO) responsible for the initial oxidation of aromatic hydrocarbons. Based on these results, a comprehensive cellular response of M. vanbaalenii PYR-1 to BP crude oil was proposed. This study increases our fundamental understanding of the impact of crude oil on the cellular response of bacteria and provides data needed for development of practical bioremediation applications. PMID:25888169

  5. Phase 1 remedial investigation report for 200-BP-1 operable unit. Volume 1

    SciTech Connect

    Not Available

    1993-09-01

    The US Department of Energy (DOE) Hanford Site, in Washington State is organized into numerically designated operational areas including the 100, 200, 300, 400, 600, and 1100 Areas. The US Environmental Protection Agency (EPA), in November 1989 included the 200 Areas of the Hanford Site on the National Priority List (NPL) under the Comprehensive Environmental Response, Compensation and Liability Act of 1980 (CERCLA). Inclusion on the NPL initiated the remedial investigation (RD process for the 200-BP-1 operable unit. These efforts are being addressed through the Hanford Federal Facility Agreement and Consent Order (Ecology et al. 1989) which was negotiated and approved by the DOE, the EPA, and the State of Washington Department of Ecology (Ecology) in May 1989. This agreement, known as the Tri-Party Agreement, governs all CERCLA efforts at Hanford. In March of 1990, the Department of Energy, Richland Operations (DOE-RL) issued a Remedial Investigation/Feasibility Study (RI/FS) work plan (DOE-RL 1990a) for the 200-BP-1 operable unit. The work plan initiated the first phase of site characterization activities associated with the 200-BP-1 operable unit. The purpose of the 200-BP-1 operable unit RI is to gather and develop the necessary information to adequately understand the risks to human health and the environment posed by the site and to support the development and analysis of remedial alternatives during the FS. The RI analysis will, in turn, be used by Tri-Party Agreement signatories to make a risk-management-based selection of remedies for the releases of hazardous substances that have occurred from the 200-BP-1 operable unit.

  6. Treatability test plan for the 200-BP-1 prototype surface barrier

    SciTech Connect

    Not Available

    1993-06-01

    The US Department of Energy (DOE), Hanford Site, in Washington State is organized into numerically designated operational areas including the 100, 200, 300, 400, 600, and 1100 Areas. The US Environmental Protection Agency (EPA), in November of 1989, included the 200 Areas of the Hanford Site on the National Priority List (NPL) under the Comprehensive Environmental Response, compensation, and Liability Act of 1980 (CERCLA). The 200 Area is divided into operable units based on waste disposal information, location, facility, type, and other characteristics. The 200-BP-1 operable unit is one specific site located within the 200 East Area. Inclusion on the NPL initiated the remedial investigation (RI) process for characterizing the nature and extent of contamination and assessing risks to human health and the environment at the 200-BP-1 operable unit. In March of 1990, a remedial investigation/feasibility study (RI/FS) work plan for the 200-BP-1 operable unit was issued (DOE-RL 1990a). The work plan outlined the first phase of site characterization activities, which were completed in March of 1993 with the issuance of Phase I Remedial Investigation Report for the 200-BP-1 Operable Unit (DOE-RL 1993, Draft A). Remedial action objectives outlined in the RI report suggest that a likely remedial action at the 200-BP-1 operable unit could involve the use of a surface barrier. To further evaluate this technology, additional performance and constructability data are needed to implement this remedial action. This test plan describes the general methodology for conducting a prototype barrier treatability study. The objectives of this treatability study are to determine overall performance and constructability data on an actual waste site in conjunction with the Hanford Site Barrier Development Program.

  7. Records of the paleoclimate during the fast transgression period (13 ka BP-8 ka BP) from the mud area on the inner shelf of the East China Sea

    NASA Astrophysics Data System (ADS)

    Liu, S.

    2015-12-01

    A 35.30m-long core (MZ02) recovered from a water depth of 32.4m from the inner shelf mud deposit of the East China Sea was analyzed for sedimentary characteristics, color reflectance, clay mineral, and element geochemistry components as well as by AMS 14C dating to research the sedimentation rate, sediment provenance and paleocwan mountainous river and clay fralimate evolution during the fast transgression period in the study area. Rare earth element and clay mineral proxies indicated that the mixed provenance sediment accumulated in the foreshore-nearshore region at the beginning of the fast transgression period, with a higher sedimentation rate of 5.58m/ka. While from 9800-9500 a B.P., the sedimentation rate keep lower about 1.73m/ka, and the sediment provenance changed obviously, silt fraction were apt to Taiction prone to be transported from the Yangtze River. Multiple proxy system including sediment redness (a*), chemical index of alteration (CIA), clay mineral proxy (smectite/kaolinite), major and trace element proxy (CaO/MgO, Ba/Sr) also showed a good paleoclimate record during the fast transgression period, which could be divided into three units. All the proxies changed little during Unit I (13-11.3ka B.P.) and revealed the climate kept in a relative stable level. Obvious fluctuation happened in Unit II (11.3-10.1ka B.P.) and the temperature kept decreasing more than 1ka till the Younger Dryas event, showed a well regional response to global climate changes. While continuous warming trend resumed again in Unit III (10.1-8 ka B.P.), which may be the signal for Holocene warm period. In addition, we also found significant 80yr, 89yr and 100yr cycles in our CIA, CaO/MgO and Ba/Sr records that imply a possible solar influence on the regional climate changes during the fast transgression period. Keywords: East China Sea, provenance, transgression, mud deposit, late Pleistocene, paleoclimate

  8. Revisiting G3BP1 as a RasGAP Binding Protein: Sensitization of Tumor Cells to Chemotherapy by the RasGAP 317–326 Sequence Does Not Involve G3BP1

    PubMed Central

    Annibaldi, Alessandro; Dousse, Aline; Martin, Sophie; Tazi, Jamal; Widmann, Christian

    2011-01-01

    RasGAP is a multifunctional protein that controls Ras activity and that is found in chromosomal passenger complexes. It also negatively or positively regulates apoptosis depending on the extent of its cleavage by caspase-3. RasGAP has been reported to bind to G3BP1 (RasGAP SH3-domain-binding protein 1), a protein regulating mRNA stability and stress granule formation. The region of RasGAP (amino acids 317–326) thought to bind to G3BP1 corresponds exactly to the sequence within fragment N2, a caspase-3-generated fragment of RasGAP, that mediates sensitization of tumor cells to genotoxins. While assessing the contribution of G3BP1 in the anti-cancer function of a cell-permeable peptide containing the 317–326 sequence of RasGAP (TAT-RasGAP317–326), we found that, in conditions where G3BP1 and RasGAP bind to known partners, no interaction between G3BP1 and RasGAP could be detected. TAT-RasGAP317–326 did not modulate binding of G3BP1 to USP10, stress granule formation or c-myc mRNA levels. Finally, TAT-RasGAP317–326 was able to sensitize G3BP1 knock-out cells to cisplatin-induced apoptosis. Collectively these results indicate that G3BP1 and its putative RasGAP binding region have no functional influence on each other. Importantly, our data provide arguments against G3BP1 being a genuine RasGAP-binding partner. Hence, G3BP1-mediated signaling may not involve RasGAP. PMID:22205990

  9. Identification of a Fragment-like Small Molecule Ligand for the Methyl-lysine Binding Protein, 53BP1

    PubMed Central

    Perfetti, Michael T.; Baughma, Brandi M.; Dickson, Bradley M.; Mu, Yunxiang; Cui, Gaofeng; Mader, Pavel; Dong, Aiping; Norris, Jacqueline L.; Rothbart, Scott B.; Strahl, Brian D.; Brown, Peter J.; Janzen, William P.; Arrowsmith, Cheryl H.; Mer, Georges; McBride, Kevin M.

    2015-01-01

    Improving our understanding of the role of chromatin regulators in the initiation, development, and suppression of cancer and other devastating diseases is critical, as they are integral players in regulating DNA integrity and gene expression. Developing small molecule inhibitors for this target class with cellular activity is a crucial step toward elucidating their specific functions. We specifically targeted the DNA damage response protein, 53BP1, which uses its tandem tudor domain to recognize histone H4 dimethylated on lysine 20 (H4K20me2), a modification induced by double-strand DNA breaks. Through a cross-screening approach we identified UNC2170 (1) as a micromolar ligand of 53BP1, which demonstrates at least 17-fold selectivity for 53BP1 as compared to other methyl-lysine (Kme) binding proteins tested. Structural studies revealed that the tert-butyl amine of UNC2170 anchors the compound in the methyl-lysine (Kme) binding pocket of 53BP1, making it competitive with endogenous Kme substrates. X-ray crystallography also demonstrated that UNC2170 binds at the interface of two tudor domains of a 53BP1 dimer. Importantly, this compound functions as a 53BP1 antagonist in cellular lysates and shows cellular activity by suppressing class switch recombination, a process which requires a functional 53BP1 tudor domain. These results demonstrate that UNC2170 is a functionally active, fragment-like ligand for 53BP1. PMID:25590533

  10. Oxygen-dependent acetylation and dimerization of the corepressor CtBP2 in neural stem cells

    SciTech Connect

    Karaca, Esra; Lewicki, Jakub; Hermanson, Ola

    2015-03-01

    The transcriptional corepressor CtBP2 is essential for proper development of the nervous system. The factor exerts its repression by interacting in complexes with chromatin-modifying factors such as histone deacetylases (HDAC) 1/2 and the histone demethylase LSD1/KDM1. Notably, the histone acetyl transferase p300 acetylates CtBP2 and this is an important regulatory event of the activity and subcellular localization of the protein. We recently demonstrated an essential role for CtBPs as sensors of microenvironmental oxygen levels influencing the differentiation potential of neural stem cells (NSCs), but it is not known whether oxygen levels influence the acetylation levels of CtBP factors. Here we show by using proximity ligation assay (PLA) that CtBP2 acetylation levels increased significantly in undifferentiated, proliferating NSCs under hypoxic conditions. CtBP2 interacted with the class III HDAC Sirt1 but this interaction was unaltered in hypoxic conditions, and treatment with the Sirt1 inhibitor Ex527 did not result in any significant change in total CtBP2 acetylation levels. Instead, we revealed a significant decrease in PLA signal representing CtBP2 dimerization in NSCs under hypoxic conditions, negatively correlating with the acetylation levels. Our results suggest that microenvironmental oxygen levels influence the dimerization and acetylation levels, and thereby the activity, of CtBP2 in proliferating NSCs.

  11. Phosphorylation-dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4TopBP1

    PubMed Central

    Garcia, Valerie; Ren, Jing-Yi; Day, Matthew; Carr, Antony M.; Oliver, Antony W.; Du, Li-Lin; Pearl, Laurence H.

    2016-01-01

    Summary The BRCT-domain protein, Rad4TopBP1, facilitates activation of the DNA damage checkpoint in S. pombe by physically coupling the Rad9-Rad1-Hus1 clamp, the Rad3ATR-Rad26ATRIP kinase complex and Crb253BP1 mediator. We have now determined crystal structures of the BRCT repeats of Rad4TopBP1, revealing a distinctive domain architecture, and have characterized their phosphorylation-dependent interactions with Rad9 and Crb253BP1. We identify a cluster of phosphorylation sites in the N-terminal region of Crb253BP1 that mediate interaction with Rad4TopBP1, and reveal a hierarchical phosphorylation mechanism in which phosphorylation of Thr215 and Thr235 promotes phosphorylation of the non-canonical Thr187 site by scaffolding CDK recruitment. Finally we show that simultaneous interaction of a single Rad4TopBP1 molecule with both Thr187 phosphorylation sites in a Crb253BP1 dimer, is essential for establishing the DNA damage checkpoint. PMID:24074952

  12. PEP-1-FK506BP inhibits alkali burn-induced corneal inflammation on the rat model of corneal alkali injury.

    PubMed

    Kim, Dae Won; Lee, Sung Ho; Shin, Min Jea; Kim, Kibom; Ku, Sae Kwang; Youn, Jong Kyu; Cho, Su Bin; Park, Jung Hwan; Lee, Chi Hern; Son, Ora; Sohn, Eun Jeong; Cho, Sung-Woo; Park, Jong Hoon; Kim, Hyun Ah; Han, Kyu Hyung; Park, Jinseu; Eum, Won Sik; Choi, Soo Young

    2015-11-01

    FK506 binding protein 12 (FK506BP) is a small peptide with a single FK506BP domain that is involved in suppression of immune response and reactive oxygen species. FK506BP has emerged as a potential drug target for several inflammatory diseases. Here, we examined the protective effects of directly applied cell permeable FK506BP (PEP-1-FK506BP) on corneal alkali burn injury (CAI). In the cornea, there was a significant decrease in the number of cells expressing pro-inflammation, apoptotic, and angiogenic factors such as TNF-α, COX-2, and VEGF. Both corneal opacity and corneal neovascularization (CNV) were significantly decreased in the PEP-1-FK506BP treated group. Our results showed that PEP-1-FK506BP can significantly inhibit alkali burn-induced corneal inflammation in rats, possibly by accelerating corneal wound healing and by reducing the production of angiogenic factors and inflammatory cytokines. These results suggest that PEP-1-FK506BP may be a potential therapeutic agent for CAI. PMID:25817214

  13. Ectopic expression of RNF168 and 53BP1 increases mutagenic but not physiological non-homologous end joining

    PubMed Central

    Zong, Dali; Callén, Elsa; Pegoraro, Gianluca; Lukas, Claudia; Lukas, Jiri; Nussenzweig, André

    2015-01-01

    DNA double strand breaks (DSBs) formed during S phase are preferentially repaired by homologous recombination (HR), whereas G1 DSBs, such as those occurring during immunoglobulin class switch recombination (CSR), are repaired by non-homologous end joining (NHEJ). The DNA damage response proteins 53BP1 and BRCA1 regulate the balance between NHEJ and HR. 53BP1 promotes CSR in part by mediating synapsis of distal DNA ends, and in addition, inhibits 5’ end resection. BRCA1 antagonizes 53BP1 dependent DNA end-blocking activity during S phase, which would otherwise promote mutagenic NHEJ and genome instability. Recently, it was shown that supra-physiological levels of the E3 ubiquitin ligase RNF168 results in the hyper-accumulation of 53BP1/BRCA1 which accelerates DSB repair. Here, we ask whether increased expression of RNF168 or 53BP1 impacts physiological versus mutagenic NHEJ. We find that the anti-resection activities of 53BP1 are rate-limiting for mutagenic NHEJ but not for physiological CSR. As heterogeneity in the expression of RNF168 and 53BP1 is found in human tumors, our results suggest that deregulation of the RNF168/53BP1 pathway could alter the chemosensitivity of BRCA1 deficient tumors. PMID:25916843

  14. Serum protein 90K/Mac-2BP is an independent predictor of disease severity during hepatitis C virus infection.

    PubMed

    Kittl, E M; Hofmann, J; Hartmann, G; Sebesta, C; Beer, F; Bauer, K; Huber, K R

    2000-03-01

    The serum protein designated 90K/Mac-2BP has been found at elevated concentrations in the sera of patients with various types of cancer and viral infections. The importance of the 90K/Mac-2BP serum concentrations in predicting the response towards interferon-alpha treatment for hepatitis C virus (HCV) infection prompted us to utilize a new ELISA for soluble human 90K/Mac-2BP to monitor the serum concentrations of this protein in our HCV-positive patients. Seventy HCV-PCR and anti-HCV antibody positive patients were analyzed for their serum levels of aspartate aminotransferase, alanine aminotransferase, gamma-glutamyltransferase, cholinesterase, HCV-viral load, viral subtypes, and 90K/Mac-2BP. On correlation of age and 90K/Mac-2BP levels, we found an apparent correlation that was proved rather to be a strong dependence of 90K/Mac-2BP concentrations on disease severity/duration, which increases with age. Multiple correlation analysis demonstrated the independent nature of 90K/Mac-2BP concentrations, underscoring the potential high utility of this new marker. Our data corroborate the potential of the scavenger receptor family protein 90K/Mac-2BP as an independent predictor of disease severity during HCV infection. PMID:10905755

  15. Design, synthesis, and biological evaluation of substrate-competitive inhibitors of C-terminal Binding Protein (CtBP).

    PubMed

    Korwar, Sudha; Morris, Benjamin L; Parikh, Hardik I; Coover, Robert A; Doughty, Tyler W; Love, Ian M; Hilbert, Brendan J; Royer, William E; Kellogg, Glen E; Grossman, Steven R; Ellis, Keith C

    2016-06-15

    C-terminal Binding Protein (CtBP) is a transcriptional co-regulator that downregulates the expression of many tumor-suppressor genes. Utilizing a crystal structure of CtBP with its substrate 4-methylthio-2-oxobutyric acid (MTOB) and NAD(+) as a guide, we have designed, synthesized, and tested a series of small molecule inhibitors of CtBP. From our first round of compounds, we identified 2-(hydroxyimino)-3-phenylpropanoic acid as a potent CtBP inhibitor (IC50=0.24μM). A structure-activity relationship study of this compound further identified the 4-chloro- (IC50=0.18μM) and 3-chloro- (IC50=0.17μM) analogues as additional potent CtBP inhibitors. Evaluation of the hydroxyimine analogues in a short-term cell growth/viability assay showed that the 4-chloro- and 3-chloro-analogues are 2-fold and 4-fold more potent, respectively, than the MTOB control. A functional cellular assay using a CtBP-specific transcriptional readout revealed that the 4-chloro- and 3-chloro-hydroxyimine analogues were able to block CtBP transcriptional repression activity. This data suggests that substrate-competitive inhibition of CtBP dehydrogenase activity is a potential mechanism to reactivate tumor-suppressor gene expression as a therapeutic strategy for cancer. PMID:27156192

  16. The CES-2-related transcription factor E4BP4 is an intrinsic regulator of motoneuron growth and survival.

    PubMed

    Junghans, Dirk; Chauvet, Sophie; Buhler, Emmanuelle; Dudley, Keith; Sykes, Toby; Henderson, Christopher E

    2004-09-01

    The regulation of neuronal growth and survival during development requires interplay between extrinsic and intrinsic factors. Among the latter, transcription factors play a key role. In the nematode, the transcription factor CES-2 predisposes neurosecretory motoneurons to death, whereas E4BP4 (NFIL3), one of its vertebrate homologs, regulates survival of pro-B lymphocytes. We show that E4BP4 is expressed by embryonic rat and chicken motoneurons in vivo, with levels being highest in neurons that survive the period of naturally occurring cell death. Overexpression of E4BP4 by electroporation of purified motoneurons in culture protected them almost completely against cell death triggered by removal of neurotrophic factors or activation of death receptors. Moreover, E4BP4 strongly enhanced neuronal cell size and axonal growth. Axons of motoneurons transfected with E4BP4 were 3.5-fold longer than control neurons grown on laminin; this effect required the activity of PI3 kinase. In vivo, overexpression of E4BP4 in chicken embryos reduced the number of dying motoneurons by 45%. Our results define E4BP4 as a novel intrinsic regulator of motoneuron growth and survival. Pathways regulated by E4BP4 are of potential interest both for understanding neuromuscular development and for promoting neuronal survival and regeneration in pathological situations. PMID:15306565

  17. Glucocorticoid induced osteoblast apoptosis by increasing E4BP4 expression via up-regulation of Bim.

    PubMed

    Chen, Fangjing; Zhang, Li; OuYang, Yueping; Guan, Huapeng; Liu, Qi; Ni, Bin

    2014-06-01

    It is well known that glucocorticoid (GC)-induced bone loss is caused primarily by hypofunction and apoptosis of osteoblasts. However, the precise molecular events underlying the effect of GC on osteoblast apoptosis are not fully understood. Recent studies implicated an important role of E4BP4 in the regulation of osteoblast apoptosis and differentiation. Furthermore, E4BP4 is a GC-regulated gene required for GC-induced apoptosis in many cells. Therefore, we hypothesize that E4BP4 may be implicated in the process of GC-induced osteoblast apoptosis. Western blot, reverse-transcription-PCR, flow cytometry, and Hoechst 33258 staining were employed to investigate the role of E4BP4 in dexamethasone (DEX)-induced osteoblast apoptosis. We found that the expression of E4BP4 is significantly up-regulated in osteoblasts exposed to DEX. Furthermore, the depletion of E4BP4 significantly decreased DEX-induced osteoblast apoptosis. In addition, E4BP4 plays a crucial role in GC-evoked apoptosis of osteoblasts by enabling induction of Bim. On the basis of these results above, we can draw the conclusion that E4BP4 may contribute to the process of DEX-induced osteoblast apoptosis. PMID:24658772

  18. HP1BP3 is a novel histone H1 related protein with essential roles in viability and growth.

    PubMed

    Garfinkel, Benjamin P; Melamed-Book, Naomi; Anuka, Eli; Bustin, Michael; Orly, Joseph

    2015-02-27

    The dynamic architecture of chromatin is vital for proper cellular function, and is maintained by the concerted action of numerous nuclear proteins, including that of the linker histone H1 variants, the most abundant family of nucleosome-binding proteins. Here we show that the nuclear protein HP1BP3 is widely expressed in most vertebrate tissues and is evolutionarily and structurally related to the H1 family. HP1BP3 contains three globular domains and a highly positively charged C-terminal domain, resembling similar domains in H1. Fluorescence recovery after photobleaching (FRAP) studies indicate that like H1, binding of HP1BP3 to chromatin depends on both its C and N terminal regions and is affected by the cell cycle and post translational modifications. HP1BP3 contains functional motifs not found in H1 histones, including an acidic stretch and a consensus HP1-binding motif. Transcriptional profiling of HeLa cells lacking HP1BP3 showed altered expression of 383 genes, suggesting a role for HP1BP3 in modulation of gene expression. Significantly, Hp1bp3(-/-) mice present a dramatic phenotype with 60% of pups dying within 24 h of birth and the surviving animals exhibiting a lifelong 20% growth retardation. We suggest that HP1BP3 is a ubiquitous histone H1 like nuclear protein with distinct and non-redundant functions necessary for survival and growth. PMID:25662603

  19. PEP-1-FK506BP inhibits alkali burn-induced corneal inflammation on the rat model of corneal alkali injury

    PubMed Central

    Kim, Dae Won; Lee, Sung Ho; Shin, Min Jea; Kim, Kibom; Ku, Sae Kwang; Youn, Jong Kyu; Cho, Su Bin; Park, Jung Hwan; Lee, Chi Hern; Son, Ora; Sohn, Eun Jeong; Cho, Sung-Woo; Park, Jong Hoon; Kim, Hyun Ah; Han, Kyu Hyung; Park, Jinseu; Eum, Won Sik; Choi, Soo Young

    2015-01-01

    FK506 binding protein 12 (FK506BP) is a small peptide with a single FK506BP domain that is involved in suppression of immune response and reactive oxygen species. FK506BP has emerged as a potential drug target for several inflammatory diseases. Here, we examined the protective effects of directly applied cell permeable FK506BP (PEP-1-FK506BP) on corneal alkali burn injury (CAI). In the cornea, there was a significant decrease in the number of cells expressing pro-inflammation, apoptotic, and angiogenic factors such as TNF-α, COX-2, and VEGF. Both corneal opacity and corneal neovascularization (CNV) were significantly decreased in the PEP-1-FK506BP treated group. Our results showed that PEP-1-FK506BP can significantly inhibit alkali burn-induced corneal inflammation in rats, possibly by accelerating corneal wound healing and by reducing the production of angiogenic factors and inflammatory cytokines. These results suggest that PEP-1-FK506BP may be a potential therapeutic agent for CAI. [BMB Reports 2015; 48(11): 618-623] PMID:25817214

  20. HP1BP3 is a novel histone H1 related protein with essential roles in viability and growth

    PubMed Central

    Garfinkel, Benjamin P.; Melamed-Book, Naomi; Anuka, Eli; Bustin, Michael; Orly, Joseph

    2015-01-01

    The dynamic architecture of chromatin is vital for proper cellular function, and is maintained by the concerted action of numerous nuclear proteins, including that of the linker histone H1 variants, the most abundant family of nucleosome-binding proteins. Here we show that the nuclear protein HP1BP3 is widely expressed in most vertebrate tissues and is evolutionarily and structurally related to the H1 family. HP1BP3 contains three globular domains and a highly positively charged C-terminal domain, resembling similar domains in H1. Fluorescence recovery after photobleaching (FRAP) studies indicate that like H1, binding of HP1BP3 to chromatin depends on both its C and N terminal regions and is affected by the cell cycle and post translational modifications. HP1BP3 contains functional motifs not found in H1 histones, including an acidic stretch and a consensus HP1-binding motif. Transcriptional profiling of HeLa cells lacking HP1BP3 showed altered expression of 383 genes, suggesting a role for HP1BP3 in modulation of gene expression. Significantly, Hp1bp3−/− mice present a dramatic phenotype with 60% of pups dying within 24 h of birth and the surviving animals exhibiting a lifelong 20% growth retardation. We suggest that HP1BP3 is a ubiquitous histone H1 like nuclear protein with distinct and non-redundant functions necessary for survival and growth. PMID:25662603

  1. Tyrosine phosphorylation of 3BP2 is indispensable for the interaction with VAV3 in chicken DT40 cells

    SciTech Connect

    Chihara, Kazuyasu; Kimura, Yukihiro; Honjoh, Chisato; Yamauchi, Shota; Takeuchi, Kenji; Sada, Kiyonao

    2014-03-10

    Adaptor protein c-Abl SH3 domain-binding protein-2 (3BP2) is known to play regulatory roles in immunoreceptor-mediated signal transduction. We have previously demonstrated that Tyr{sup 174}, Tyr{sup 183} and Tyr{sup 446} in mouse 3BP2 are predominantly phosphorylated by Syk, and the phosphorylation of Tyr{sup 183} and the Src homology 2 (SH2) domain of mouse 3BP2 are critical for B cell receptor (BCR)-induced activation of nuclear factor of activated T cells (NFAT) in human B cells. In this report, we have shown that Syk, but not Abl family protein-tyrosine kinases, is critical for BCR-mediated tyrosine phosphorylation of 3BP2 in chicken DT40 cells. Mutational analysis showed that Tyr{sup 174}, Tyr{sup 183} and Tyr{sup 426} of chicken 3BP2 are the major phosphorylation sites by Syk and the SH2 domain of 3BP2 is critical for tyrosine phosphorylation. In addition, phosphorylation of Tyr{sup 426} is required for the inducible interaction with the SH2 domain of Vav3. Moreover, the expression of the mutant form of 3BP2 in which Tyr{sup 426} was substituted to Phe resulted in the reduction in BCR-mediated Rac1 activation, when compared with the case of wild-type. Altogether, these data suggest that 3BP2 is involved in the activation of Rac1 through the regulation of Vav3 by Syk-dependent phosphorylation of Tyr{sup 426} following BCR stimulation. - Highlights: • 3BP2 is phosphorylated by Syk, but not Abl family kinases in BCR signaling. • Tyr183 and Tyr426 in chicken 3BP2 are the major phosphorylation sites by Syk. • The SH2 domain of 3BP2 is critical for tyrosine phosphorylation of 3BP2. • Phosphorylation of Tyr426 in 3BP2 is required for the inducible binding with Vav3. • 3BP2 is involved in the regulation of BCR-mediated Rac1 activation.

  2. Role of 53BP1 in the Regulation of DNA Double-Strand Break Repair Pathway Choice

    PubMed Central

    Gupta, Arun; Hunt, Clayton R.; Chakraborty, Sharmistha; Pandita, Raj K.; Yordy, John; Ramnarain, Deepti B.; Horikoshi, Nobuo; Pandita, Tej K.

    2014-01-01

    The p53-binding protein 1 (53BP1) is a well-known DNA damage response (DDR) factor, which is recruited to nuclear structures at the site of DNA damage and forms readily visualized ionizing radiation (IR) induced foci. Depletion of 53BP1 results in cell cycle arrest in G2/M phase as well as genomic instability in human as well as mouse cells. Within the DNA damage response mechanism, 53BP1 is classified as an adaptor/mediator, required for processing of the DNA damage response signal and as a platform for recruitment of other repair factors. More recently, specific 53BP1 contributions to DSB repair pathway choice have been recognized and are being characterized. In this review, we have summarized recent advances in understanding the role of 53BP1 in regulating DNA DSBs repair pathway choice, variable diversity joining [V(D)J] recombination and class-switch recombination (CSR). PMID:24320053

  3. Role of 53BP1 in the regulation of DNA double-strand break repair pathway choice.

    PubMed

    Gupta, Arun; Hunt, Clayton R; Chakraborty, Sharmistha; Pandita, Raj K; Yordy, John; Ramnarain, Deepti B; Horikoshi, Nobuo; Pandita, Tej K

    2014-01-01

    The p53-binding protein 1 (53BP1) is a well-known DNA damage response (DDR) factor, which is recruited to nuclear structures at the site of DNA damage and forms readily visualized ionizing radiation (IR) induced foci. Depletion of 53BP1 results in cell cycle arrest in G2/M phase as well as genomic instability in human as well as mouse cells. Within the DNA damage response mechanism, 53BP1 is classified as an adaptor/mediator, required for processing of the DNA damage response signal and as a platform for recruitment of other repair factors. More recently, specific 53BP1 contributions to DSB repair pathway choice have been recognized and are being characterized. In this review, we have summarized recent advances in understanding the role of 53BP1 in regulating DNA DSBs repair pathway choice, variable diversity joining [V(D)J] recombination and class-switch recombination (CSR). PMID:24320053

  4. The transcription factor E4BP4 is not required for extramedullary pathways of NK cell development.

    PubMed

    Crotta, Stefania; Gkioka, Annita; Male, Victoria; Duarte, João H; Davidson, Sophia; Nisoli, Ilaria; Brady, Hugh J M; Wack, Andreas

    2014-03-15

    NK cells contribute to antitumor and antiviral immunosurveillance. Their development in the bone marrow (BM) requires the transcription factor E4BP4/NFIL3, but requirements in other organs are less well defined. In this study, we show that CD3(-)NK1.1(+)NKp46(+)CD122(+) NK cells of immature phenotype and expressing low eomesodermin levels are found in thymus, spleen, and liver of E4BP4-deficient mice, whereas numbers of mature, eomesodermin(high) conventional NK cells are drastically reduced. E4BP4-deficient CD44(+)CD25(-) double-negative 1 thymocytes efficiently develop in vitro into NK cells with kinetics, phenotype, and functionality similar to wild-type controls, whereas no NK cells develop from E4BP4-deficient BM precursors. In E4BP4/Rag-1 double-deficient (DKO) mice, NK cells resembling those in Rag-1-deficient controls are found in similar numbers in the thymus and liver. However, NK precursors are reduced in DKO BM, and no NK cells develop from DKO BM progenitors in vitro. DKO thymocyte precursors readily develop into NK cells, but DKO BM transfers into nude recipients and NK cells in E4BP4/Rag-1/IL-7 triple-KO mice indicated thymus-independent NK cell development. In the presence of T cells or E4BP4-sufficient NK cells, DKO NK cells have a selective disadvantage, and thymic and hepatic DKO NK cells show reduced survival when adoptively transferred into lymphopenic hosts. This correlates with higher apoptosis rates and lower responsiveness to IL-15 in vitro. In conclusion, we demonstrate E4BP4-independent development of NK cells of immature phenotype, reduced fitness, short t1/2, and potential extramedullary origin. Our data identify E4BP4-independent NK cell developmental pathways and a role for E4BP4 in NK cell homeostasis. PMID:24534532

  5. The mouse BP-1 gene: Structure, chromosomal localization, and regulation of expression by type I interferons and interleukin-7

    SciTech Connect

    Wang, Jiyang; Walker, H.; Lin, Q.

    1996-04-15

    The BP-1/6C3 antigen is a homodimeric, phosphorylated type II membrane integral glycoprotein expressed on immature B-lineage cells, bone marrow stromal cells, thymic cortical epithelial cells, endothelial cells, thymic cortical epithelial cells, endothelial cells, thymic cortical epithelial cells, endothelial cells, enterocytes, and renal proximal tubular cells. Biochemical and molecular analysis identified BP-1 as glutamyl aminopeptidase, an ectoenzyme that catalyzes the hydrolysis of acidic amino acid residues from the amino termini of regulatory peptides. We have isolated genomic clones that encode the BP-1 gene (gene symbol Enpep). The gene spans more than 110 kb and contains 20 exons, it is composed of small exons ranging from 56 to 171 bp that are separated by introns ranging from less than 100 bp to approximately 10 kb. The zinc binding motif HEXXH and the glutamic acid residue 19 amino acids downstream, which also binds zinc, are encoded in exons 5 and 6. Primer extension analysis revealed a common major transcriptional start site in a pre-B cell line, in a bone marrow stromal cell line, and in kidney cells. An interferon responsive element also located in the promoter region appeared to be functional, since type I interferons (IFN-{alpha}/IFN-{beta}) upregulated BP-1 expression in pre-B cell lines. The BP-1/Enpep gene was localized to a distal region of mouse chromosome 3 in a region homologous to human chromosome 4q25. Interestingly, while interleukin-7 (IL-7) induced both cell growth and increased BP-1 expression, IFN-{alpha}/IFN-{beta} upregulated BP-1 expression but inhibited IL-7-induced proliferation. This finding indicates that the upregulated BP-1 expression can be disassociated from the cell growth signal. 48 refs., 7 figs., 1 tab.

  6. One Prediction Model Based on BP Neural Network for Newcastle Disease

    NASA Astrophysics Data System (ADS)

    Wang, Hongbin; Gong, Duqiang; Xiao, Jianhua; Zhang, Ru; Li, Lin

    The purpose of this paper is to investigate the correlation between meteorological factors and Newcastle disease incidence, and to determine the key factors that affect Newcastle disease. Having built BP neural network forecasting model by Matlab 7.0 software, we tested the performance of the model according to the coefficient of determination (R2) and absolute values of the difference between predictive value and practical incidence. The result showed that 6 kinds of meteorological factors determined, and the model's coefficient of determination is 0.760, and the performance of the model is very good. Finally, we build Newcastle disease forecasting model, and apply BP neural network theory in animal disease forecasting research firstly.

  7. One Prediction Model Based on BP Neural Network for Newcastle Disease

    NASA Astrophysics Data System (ADS)

    Wang, Hongbin; Gong, Duqiang; Xiao, Jianhua; Zhang, Ru; Li, Lin

    The purpose of this paper is to investigate the correlation between meteorological factors and Newcastle disease incidence, and to determine the key factors that affect Newcastle disease. Having built BP neural network forecasting model by Matlab 7.0 software, we tested the performance of the model according to the coefficient of determination (R2) and absolute values of the difference between predictive value and practical incidence. The result showed that 6 kinds of meteorological factors determined, and the model’s coefficient of determination is 0.760, and the performance of the model is very good. Finally, we build Newcastle disease forecasting model, and apply BP neural network theory in animal disease forecasting research firstly.

  8. The impact of arithmetic representation on implementing MLP-BP on FPGAs: a study.

    PubMed

    Savich, Antony W; Moussa, Medhat; Areibi, Shawki

    2007-01-01

    In this paper, arithmetic representations for implementing multilayer perceptrons trained using the error backpropagation algorithm (MLP-BP) neural networks on field-programmable gate arrays (FPGAs) are examined in detail. Both floating-point (FLP) and fixed-point (FXP) formats are studied and the effect of precision of representation and FPGA area requirements are considered. A generic very high-speed integrated circuit hardware description language (VHDL) program was developed to help experiment with a large number of formats and designs. The results show that an MLP-BP network uses less clock cycles and consumes less real estate when compiled in an FXP format, compared with a larger and slower functioning compilation in an FLP format with similar data representation width, in bits, or a similar precision and range. PMID:17278475

  9. VizieR Online Data Catalog: BP Peg times of maximum light (Wang+, 2014)

    NASA Astrophysics Data System (ADS)

    Wang, S.-M.; Qian, S.-B.; He, J.-J.; Zhou, X.; Zhao, E.-G.

    2015-05-01

    Photometric observations of BP Peg were obtained on November 4, 2013 by using the 1.0-m reflecting telescope at Yunnan Observatories (YNOs) that is equipped with a Cassegrain-focus multicolor CCD photometer. An Andor DW436 2K CCD camera together with the wide-band, Johnson-Cousins Rc and Ic filters, attached to this Cassegrain telescope is used. To increase the photometric precision, we also observed the variable star without filters. BP Peg was also observed on December 29, 2013 by using the 85-cm telescope at the Xinglong Station of National Astronomical Observatory (NAO). The telescope is equipped with a primary-focus multi-color CCD photometer where a PI1024 BFT (Back-illuminated and Frame-Transfer) camera is used as the detector. The wide-band filter in V was used during the observations. (1 data file).

  10. Evaluating Vegetation Feedbacks at 6kyBP Across Northern Africa in a GCM.

    NASA Astrophysics Data System (ADS)

    Muri, H.; Allen, M.; Valdes, P.

    2008-12-01

    Geological evidence indicate that the mid-Holocene experienced stronger than present day monsoon circulations, particularly across northern Africa. Sahara saw more in the way of a Sahelian vegetation, rather than the present day hyper arid conditions. General Circulation Models notoriously underestimate the northwards expansion of the increase in the Saharan moisture budget at 6kyBP. Here results are presented from a model (HadSM3) run in which the vegetation has been altered across northern Africa and the Middle East to evaluate the vegetation -- climate feedbacks. In addition to altering the orbital boundary conditions to 6k settings, the vegetation is changed from desert to rain forest, as opposed to a more realistic 6kyBP vegetation cover of steppe. This is to tease out a stronger signal and see if the modelled climate can be kicked out of its regional dry regime.

  11. BP-5 Remedial Investigation Slug-Test Characterization Results for Well 699-52-55A

    SciTech Connect

    Newcomer, Darrell R.

    2008-07-21

    Pacific Northwest National Laboratory conducted slug-test characterization at the final, completed BP-5 Remedial Investigation well 699-52-55A near the 200-East Area at the Hanford Site on April 22, 2008. The slug-test characterization was in support of the BP-5 Remedial Investigation. The portion of the unconfined aquifer tested is composed of sediments of the lower Ringold Formation and the underlying Elephant Mountain basalt flowtop. The basalt flowtop unit was included as part of the effective test-interval length for the slug-test analysis because the flowtop unit is hydraulically communicative with the unconfined aquifer. Estimates of hydraulic conductivity for the effective test-interval length represent composite values for the lower Ringold Formation and the underlying Elephant Mountain basalt flow top.

  12. Quantitative detection of defects based on Markov-PCA-BP algorithm using pulsed infrared thermography technology

    NASA Astrophysics Data System (ADS)

    Tang, Qingju; Dai, Jingmin; Liu, Junyan; Liu, Chunsheng; Liu, Yuanlin; Ren, Chunping

    2016-07-01

    Quantitative detection of debonding defects' diameter and depth in TBCs has been carried out using pulsed infrared thermography technology. By combining principal component analysis with neural network theory, the Markov-PCA-BP algorithm was proposed. The principle and realization process of the proposed algorithm was described. In the prediction model, the principal components which can reflect most characteristics of the thermal wave signal were set as the input, and the defect depth and diameter was set as the output. The experimental data from pulsed infrared thermography tests of TBCs with flat bottom hole defects was selected as the training and testing sample. Markov-PCA-BP predictive system was arrived, based on which both the defect depth and diameter were identified accurately, which proved the effectiveness of the proposed method for quantitative detection of debonding defects in TBCs.

  13. A Speech Endpoint Detection Algorithm Based on BP Neural Network and Multiple Features

    NASA Astrophysics Data System (ADS)

    Shi, Yong-Qiang; Li, Ru-Wei; Zhang, Shuang; Wang, Shuai; Yi, Xiao-Qun

    Focusing on a sharp decline in the performance of endpoint detection algorithm in a complicated noise environment, a new speech endpoint detection method based on BPNN (back propagation neural network) and multiple features is presented. Firstly, maximum of short-time autocorrelation function and spectrum variance of speech signals are extracted respectively. Secondly, these feature vectors as the input of BP neural network are trained and modeled and then the Genetic Algorithm is used to optimize the BP Neural Network. Finally, the signal's type is determined according to the output of Neural Network. The experiments show that the correct rate of this proposed algorithm is improved, because this method has better robustness and adaptability than algorithm based on maximum of short-time autocorrelation function or spectrum variance.

  14. Ultra-fast mechanochemical synthesis of boron phosphides, BP and B12P2.

    PubMed

    Mukhanov, Vladimir A; Vrel, Dominique; Sokolov, Petr S; Le Godec, Yann; Solozhenko, Vladimir L

    2016-06-21

    Here we propose a new approach to the synthesis of single-phase boron phosphides (BP and B12P2) by mechanochemical reactions between boron phosphate and magnesium/magnesium diboride in the presence of an inert diluent (sodium chloride). The proposed method is characterized by the simplicity of implementation, high efficiency, low cost of the product, and good perspectives for large-scale production. PMID:27157207

  15. 75 FR 56526 - National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-16

    ...This notice announces an open meeting of the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling (the Commission). The Commission was organized pursuant to the Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat. 770) (the Act). The Act requires that agencies publish these notices in the Federal Register. The Charter of the Commission can be found at: http://......

  16. The Toxicity of 125IUdR in Cultured Mouse BP8 Tumour Cells

    PubMed Central

    Porteous, D. D.

    1971-01-01

    The toxicity of the low-energy electrons from 125I in labelled IUdR was assayed by labelling the DNA of BP8 mouse tumour cells with the nucleoside and studying their subsequent growth in culture. Toxicity was observed in cells grown in medium containing more than 0·01 μCi/ml. The amount of label incorporated into cells showing deleterious effects is compared with that reported by others. PMID:5169169

  17. TopBP1 Governs Hematopoietic Stem/Progenitor Cells Survival in Zebrafish Definitive Hematopoiesis

    PubMed Central

    Gao, Lei; Li, Dantong; Ma, Ke; Zhang, Wenjuan; Xu, Tao; Fu, Cong; Jing, Changbin; Jia, Xiaoe; Wu, Shuang; Sun, Xin; Dong, Mei; Deng, Min; Chen, Yi; Zhu, Wenge; Peng, Jinrong; Wan, Fengyi; Zhou, Yi; Zon, Leonard I.; Pan, Weijun

    2015-01-01

    In vertebrate definitive hematopoiesis, nascent hematopoietic stem/progenitor cells (HSPCs) migrate to and reside in proliferative hematopoietic microenvironment for transitory expansion. In this process, well-established DNA damage response pathways are vital to resolve the replication stress, which is deleterious for genome stability and cell survival. However, the detailed mechanism on the response and repair of the replication stress-induced DNA damage during hematopoietic progenitor expansion remains elusive. Here we report that a novel zebrafish mutantcas003 with nonsense mutation in topbp1 gene encoding topoisomerase II β binding protein 1 (TopBP1) exhibits severe definitive hematopoiesis failure. Homozygous topbp1cas003 mutants manifest reduced number of HSPCs during definitive hematopoietic cell expansion, without affecting the formation and migration of HSPCs. Moreover, HSPCs in the caudal hematopoietic tissue (an equivalent of the fetal liver in mammals) in topbp1cas003 mutant embryos are more sensitive to hydroxyurea (HU) treatment. Mechanistically, subcellular mislocalization of TopBP1cas003 protein results in ATR/Chk1 activation failure and DNA damage accumulation in HSPCs, and eventually induces the p53-dependent apoptosis of HSPCs. Collectively, this study demonstrates a novel and vital role of TopBP1 in the maintenance of HSPCs genome integrity and survival during hematopoietic progenitor expansion. PMID:26131719

  18. Speech recognition method based on genetic vector quantization and BP neural network

    NASA Astrophysics Data System (ADS)

    Gao, Li'ai; Li, Lihua; Zhou, Jian; Zhao, Qiuxia

    2009-07-01

    Vector Quantization is one of popular codebook design methods for speech recognition at present. In the process of codebook design, traditional LBG algorithm owns the advantage of fast convergence, but it is easy to get the local optimal result and be influenced by initial codebook. According to the understanding that Genetic Algorithm has the capability of getting the global optimal result, this paper proposes a hybrid clustering method GA-L based on Genetic Algorithm and LBG algorithm to improve the codebook.. Then using genetic neural networks for speech recognition. consequently search a global optimization codebook of the training vector space. The experiments show that neural network identification method based on genetic algorithm can extricate from its local maximum value and the initial restrictions, it can show superior to the standard genetic algorithm and BP neural network algorithm from various sources, and the genetic BP neural networks has a higher recognition rate and the unique application advantages than the general BP neural network in the same GA-VQ codebook, it can achieve a win-win situation in the time and efficiency.

  19. Recognition of edible oil by using BP neural network and laser induced fluorescence spectrum

    NASA Astrophysics Data System (ADS)

    Mu, Tao-tao; Chen, Si-ying; Zhang, Yin-chao; Guo, Pan; Chen, He; Zhang, Hong-yan; Liu, Xiao-hua; Wang, Yuan; Bu, Zhi-chao

    2013-09-01

    In order to accomplish recognition of the different edible oil we set up a laser induced fluorescence spectrum system in the laboratory based on Laser induced fluorescence spectrum technology, and then collect the fluorescence spectrum of different edible oil by using that system. Based on this, we set up a fluorescence spectrum database of different cooking oil. It is clear that there are three main peak position of different edible oil from fluorescence spectrum chart. Although the peak positions of all cooking oil were almost the same, the relative intensity of different edible oils was totally different. So it could easily accomplish that oil recognition could take advantage of the difference of relative intensity. Feature invariants were extracted from the spectrum data, which were chosen from the fluorescence spectrum database randomly, before distinguishing different cooking oil. Then back propagation (BP) neural network was established and trained by the chosen data from the spectrum database. On that basis real experiment data was identified by BP neural network. It was found that the overall recognition rate could reach as high as 83.2%. Experiments showed that the laser induced fluorescence spectrum of different cooking oil was very different from each other, which could be used to accomplish the oil recognition. Laser induced fluorescence spectrum technology, combined BP neural network,was fast, high sensitivity, non-contact, and high recognition rate. It could become a new technique to accomplish the edible oil recognition and quality detection.

  20. Time-dependent atomic diffusion in magnetic ApBp stars

    NASA Astrophysics Data System (ADS)

    Stift, M. J.; Alecian, G.

    2016-03-01

    Numerical modelling of surface abundance distributions in ApBp star atmospheres constitutes a challenging astrophysical problem. This paper is intended to deepen our understanding of how atomic diffusion affects the atmospheric structure of magnetic ApBp stars, and in particular how time-dependent calculations may be compared to the alternative method of estimating equilibrium stratifications. Our numerical calculations - with the stellar atmosphere adjusted self-consistently to the abundance profiles - show that final stationary solutions of the time-dependent diffusion problem (constant particle flux throughout the stellar atmosphere) are seemingly at variance with equilibrium stratifications (zero particle flux). In this work, we will provide some understanding of the origin of these differences and try to elucidate the as yet little explored behaviour of time-dependent atomic diffusion. To this purpose, we assess the influence of the boundary condition at the bottom of the atmosphere, we investigate how the stratifications depend on magnetic field angle and strength, and we have a look at possible interactions between different chemical elements. Based on a grid of atmospheric models and stratifications reflecting dipolar magnetic geometries, we also present predicted line profiles for different oblique rotator models. Finally, we shortly discuss the consequences of our findings for the interpretation of abundance maps of magnetic ApBp stars.

  1. A Rapid, Cost-Effective Method of Assembly and Purification of Synthetic DNA Probes >100 bp

    PubMed Central

    Jensen, Michael A.; Jauregui, Lauren; Davis, Ronald W.

    2012-01-01

    Here we introduce a rapid, cost-effective method of generating molecular DNA probes in just under 15 minutes without the need for expensive, time-consuming gel-extraction steps. As an example, we enzymatically concatenated six variable strands (50 bp) with a common strand sequence (51 bp) in a single pool using Fast-Link DNA ligase to produce 101 bp targets (10 min). Unincorporated species were then filtered out by passing the crude reaction through a size-exclusion column (<5 min). We then compared full-length product yield of crude and purified samples using HPLC analysis; the results of which clearly show our method yields three-quarters that of the crude sample (50% higher than by gel-extraction). And while we substantially reduced the amount of unligated product with our filtration process, higher purity and yield, with an increase in number of stands per reaction (>12) could be achieved with further optimization. Moreover, for large-scale assays, we envision this method to be fully automated with the use of robotics such as the Biomek FX; here, potentially thousands of samples could be pooled, ligated and purified in either a 96, 384 or 1536-well platform in just minutes. PMID:22493688

  2. The signal extraction of fetal heart rate based on wavelet transform and BP neural network

    NASA Astrophysics Data System (ADS)

    Yang, Xiao Hong; Zhang, Bang-Cheng; Fu, Hu Dai

    2005-04-01

    This paper briefly introduces the collection and recognition of bio-medical signals, designs the method to collect FM signals. A detailed discussion on the system hardware, structure and functions is also given. Under LabWindows/CVI,the hardware and the driver do compatible, the hardware equipment work properly actively. The paper adopts multi threading technology for real-time analysis and makes use of latency time of CPU effectively, expedites program reflect speed, improves the program to perform efficiency. One threading is collecting data; the other threading is analyzing data. Using the method, it is broaden to analyze the signal in real-time. Wavelet transform to remove the main interference in the FM and by adding time-window to recognize with BP network; Finally the results of collecting signals and BP networks are discussed. 8 pregnant women's signals of FM were collected successfully by using the sensor. The correctness rate of BP network recognition is about 83.3% by using the above measure.

  3. SHOCKS AND A GIANT PLANET IN THE DISK ORBITING BP PISCIUM?

    SciTech Connect

    Melis, C.; Zuckerman, B.; Gielen, C.; Chen, C. H.; Rhee, Joseph H.; Song, Inseok

    2010-11-20

    Spitzer Infrared Spectrograph data support the interpretation that BP Piscium, a gas and dust enshrouded star residing at high Galactic latitude, is a first-ascent giant rather than a classical T Tauri star. Our analysis suggests that BP Piscium's spectral energy distribution can be modeled as a disk with a gap that is opened by a giant planet. Modeling the rich mid-infrared emission line spectrum indicates that the solid-state emitting grains orbiting BP Piscium are primarily composed of {approx}75 K crystalline, magnesium-rich olivine; {approx}75 K crystalline, magnesium-rich pyroxene; {approx}200 K amorphous, magnesium-rich pyroxene; and {approx}200 K annealed silica (cristobalite). These dust grains are all sub-micron sized. The giant planet and gap model also naturally explains the location and mineralogy of the small dust grains in the disk. Disk shocks that result from disk-planet interaction generate the highly crystalline dust which is subsequently blown out of the disk mid-plane and into the disk atmosphere.

  4. Late Glacial beech forest: an 18,000 5000-BP pollen record from Auckland, New Zealand

    NASA Astrophysics Data System (ADS)

    Lancashire, A. K.; Flenley, J. R.; Harper, M.

    2002-07-01

    Australia, New Zealand and South America are the main sources of terrestrial climate change records for midlatitudes in the Southern Hemisphere. The advantage of studying the New Zealand record is that its vegetation has been subject to human influence for only the last thousand years. Vegetation records for Auckland are important because earlier work indicates that during the Last Glacial Maximum, the boundary between scrubland and forest lay in the Auckland region. Auckland is situated in a volcanic field and the coring site was in the crater of a small extinct volcano (Crater Hill, formed about 29 ka BP). The 4-m long core contained sediment dating from c. 5 to c. 18 ka BP. We present pollen and diatom records from this core. The pollen records from basal clays indicate southern beech forest (mainly Nothofagus menziesii) was present in the region around Crater Hill from 18 to 14.5 ka BP. At this time, there were areas of scrub in the crater surrounding a hardwater lake. The southern forest limit could well have been close to the site. Records from overlying peat indicate beech forest was replaced by Podocarp broadleaf forest as the Last Glacial ended. Metrosideros spp. (coastal forest trees) peak in the early Holocene. This coincides with an impoverished diatom flora which indicates drier conditions in the basin. When the lake reformed in the Holocene on peat its water was more acidic.

  5. Pollen-based biomes for Beringia 18,000, 6000 and 0 14C yr BP

    USGS Publications Warehouse

    Edwards, M.E.; Anderson, P.M.; Brubaker, L.B.; Ager, T.A.; Andreev, A.A.; Bigelow, N.H.; Cwynar, L.C.; Eisner, Wendy R.; Harrison, S.P.; Hu, F.-S.; Jolly, D.; Lozhkin, A.V.; MacDonald, G.M.; Mock, C.J.; Ritchie, J.C.; Sher, A.V.; Spear, R.W.; Williams, J.W.; Yu, G.

    2000-01-01

    The objective biomization method developed by Prentice et al. (1996) for Europe was extended using modern pollen samples from Beringia and then applied to fossil pollen data to reconstruct palaeovegetation patterns at 6000 and 18,000 14C yr BP. The predicted modern distribution of tundra, taiga and cool conifer forests in Alaska and north-western Canada generally corresponds well to actual vegetation patterns, although sites in regions characterized today by a mosaic of forest and tundra vegetation tend to be preferentially assigned to tundra. Siberian larch forests are delimited less well, probably due to the extreme under-representation of Larix in pollen spectra. The biome distribution across Beringia at 6000 14C yr BP was broadly similar to today, with little change in the northern forest limit, except for a possible northward-advance in the Mackenzie delta region. The western forest limit in Alaska was probably east of its modern position. At 18,000 14C yr BP the whole of Beringia was covered by tundra. However, the importance of the various plant functional types varied from site to site, supporting the idea that the vegetation cover was a mosaic of different tundra types.

  6. BP Targets in Hypertension: What Should We Do Now That SPRINT Is Out?

    PubMed

    Bhatt, Hemal; Ghazi, Lama; Calhoun, David; Oparil, Suzanne

    2016-10-01

    Systolic blood pressure (SBP) is an important predictor of cardiovascular disease (CVD) outcomes. Lowering SBP has been shown to reduce CVD morbidity and mortality, but the optimal SBP target continues to be a topic of intense debate. The Systolic Blood Pressure Intervention Trial (SPRINT) reported a significantly lower risk for CVD outcomes and all-cause mortality by targeting SBP <120 mmHg compared with <140 mmHg in a population of hypertensive persons at high CV risk. In this review, we discuss the strengths, limitations, and generalizability of SPRINT findings to other hypertensive populations that were excluded from the trial, including those with diabetes or prior stroke, <50 years old, and at lower CVD risk. We will focus on the implications of SPRINT findings for appropriate BP targets in high-risk groups of hypertensive persons, including the elderly and those with chronic kidney disease (CKD). We will also address the cost-effectiveness of intensive BP treatment as implemented in SPRINT and the implications of SPRINT for health care policy and future BP guidelines. PMID:27566331

  7. The RNA Binding Protein Igf2bp1 Is Required for Zebrafish RGC Axon Outgrowth In Vivo

    PubMed Central

    Gaynes, John A.; Otsuna, Hideo; Campbell, Douglas S.; Manfredi, John P.; Levine, Edward M.

    2015-01-01

    Attractive growth cone turning requires Igf2bp1-dependent local translation of β-actin mRNA in response to external cues in vitro. While in vivo studies have shown that Igf2bp1 is required for cell migration and axon terminal branching, a requirement for Igf2bp1 function during axon outgrowth has not been demonstrated. Using a timelapse assay in the zebrafish retinotectal system, we demonstrate that the β-actin 3’UTR is sufficient to target local translation of the photoconvertible fluorescent protein Kaede in growth cones of pathfinding retinal ganglion cells (RGCs) in vivo. Igf2bp1 knockdown reduced RGC axonal outgrowth and tectal coverage and retinal cell survival. RGC-specific expression of a phosphomimetic Igf2bp1 reduced the density of axonal projections in the optic tract while sparing RGCs, demonstrating for the first time that Igf2bp1 is required during axon outgrowth in vivo. Therefore, regulation of local translation mediated by Igf2bp proteins may be required at all stages of axon development. PMID:26325373

  8. Functional analysis of BpDREB2 gene involved in salt and drought response from a woody plant Broussonetia papyrifera.

    PubMed

    Sun, Jingwen; Peng, Xianjun; Fan, Weihong; Tang, Mingjuan; Liu, Jie; Shen, Shihua

    2014-02-10

    The dehydration-responsive element binding proteins (DREBs) are important transcription factors in the regulation of plant responses to abiotic stresses. In this study, BpDREB2, an AP2/DREB-type transcription factor gene, was cloned from a woody plant, Broussonetia papyrifera by RACE-PCR. Sequence analyses revealed that BpDREB2 protein has three characteristic domains, including an AP2/EREBP, a nuclear localization signal and an acidic activation domain. Yeast one-hybrid assays showed that BpDREB2 protein specifically binds to the DRE sequence and activates the expression of reporter genes in yeast. These results suggested that BpDREB2 protein could function as a transcription factor of DREB family. The expression of BpDREB2 gene was remarkably induced by dehydration and high-salt treatments, but no significant change was observed under ABA or low-temperature conditions. Importantly, transgenic expression of BpDREB2 gene in Arabidopsis significantly enhanced its tolerance to salt and freezing without causing growth retardation. Taken together, these results suggested that BpDREB2 is a novel member of the AP2/EREBP trans-acting factor family which could enhance salt stress tolerance of plants and has the potential application in the improvement of crops and economical tree species. PMID:24315817

  9. The right hand copy of the nopaline Ti-plasmid 25 bp repeat is required for tumour formation.

    PubMed

    Shaw, C H; Watson, M D; Carter, G H; Shaw, C H

    1984-08-10

    At either end of the nopaline Ti-plasmid T-region resides a copy of a 25 bp repeated element. The normal T-DNA endpoint is 1 bp internal of the right copy, with the transcription initiation site of the nopaline synthase (nos) gene being approximately 300 bp away in the same direction. Here we describe results which demonstrate that deletion of any combination of sequences between the nos initiation site and the right copy of the 25 bp repeat does not affect oncogenicity. Thus a mutant retaining the right copy and only 3 bp internal of it is indistinguishable from the wild type parent in its oncogenic properties. However deletion of a further 39 bp, including complete removal of the right copy abolishes crown gall tumour formation on Kalanchöe and tobacco. From these results we infer that unlike the left border, the right copy of the 25 bp repeat is required for T-DNA transfer and/or integration. This is the first conclusive demonstration of the involvement of a copy of the repeats in this process. PMID:6473100

  10. An isocorydine derivative (d-ICD) inhibits drug resistance by downregulating IGF2BP3 expression in hepatocellular carcinoma

    PubMed Central

    Ge, Chao; Chen, Lijuan; Fang, Tao; Li, Hong; Tian, Hua; Liu, Junxi; Chen, Taoyang; Jiang, Guoping; Xie, Haiyang; Cui, Ying; Yao, Ming; Li, Jinjun

    2015-01-01

    In our previous studies, we reported that CD133+ cancer stem cells (CSCs) were chemoresistant in hepatocellular carcinoma (HCC) and that isocorydine treatment decreased the percentage of CD133+ CSCs. Here, we found that a derivative of isocorydine (d-ICD) inhibited HCC cell growth, particularly among the CD133+ subpopulation, and rendered HCC cells more sensitive to sorafenib treatment. d-ICD inhibited IGF2BP3 expression in a time-dependent manner, and IGF2BP3 expression negatively correlated with d-ICD-induced growth suppression. IGF2BP3 overexpression enriched the CD133+ CSC subpopulation in HCC, enhanced tumor sphere formation and suppressed the cytotoxic effects of sorafenib and doxorubicin. The expression of drug resistance-related genes, including ABCB1 and ABCG2, and the CSC marker CD133 expression was increased after IGF2BP3 overexpression. The significance of these observations was underscored by our findings that high IGF2BP3 expression predicted poor survival in a cohort of 236 patients with HCC and positively correlated with ABCG2 and CD133 expression in vivo. These results suggested that the d-ICD may inhibit HCC cells growth by IGF2BP3 decrease and that IGF2BP3 may serve as a therapeutic target for HCC. PMID:26327240

  11. Localized Movement and Levels of 53BP1 Protein Are Changed by γ-irradiation in PML Deficient Cells.

    PubMed

    Legartová, Soňa; Sehnalová, Petra; Malyšková, Barbora; Küntziger, Thomas; Collas, Philippe; Cmarko, Dušan; Raška, Ivan; Sorokin, Dmitry V; Kozubek, Stanislav; Bártová, Eva

    2016-11-01

    We studied epigenetics, distribution pattern, kinetics, and diffusion of proteins recruited to spontaneous and γ-radiation-induced DNA lesions. We showed that PML deficiency leads to an increased number of DNA lesions, which was accompanied by changes in histone signature. In PML wt cells, we observed two mobile fractions of 53BP1 protein with distinct diffusion in spontaneous lesions. These protein fractions were not detected in PML-deficient cells, characterized by slow-diffusion of 53BP1. Single particle tracking analysis revealed limited local motion of 53BP1 foci in PML double null cells and local motion 53BP1 foci was even more reduced after γ-irradiation. However, radiation did not change co-localization between 53BP1 nuclear bodies and interchromatin granule-associated zones (IGAZs), nuclear speckles, or chromocenters. This newly observed interaction pattern imply that 53BP1 protein could be a part of not only DNA repair, but also process mediated via components accumulated in IGAZs, nuclear speckles, or paraspeckles. Together, PML deficiency affected local motion of 53BP1 nuclear bodies and changed composition and a number of irradiation-induced foci. J. Cell. Biochem. 117: 2583-2596, 2016. © 2016 Wiley Periodicals, Inc. PMID:27526954

  12. PAK1 and CtBP1 Regulate the Coupling of Neuronal Activity to Muscle Chromatin and Gene Expression

    PubMed Central

    Thomas, Jean-Luc; Ravel-Chapuis, Aymeric; Valente, Carmen; Corda, Daniela; Méjat, Alexandre

    2015-01-01

    Acetylcholine receptor (AChR) expression in innervated muscle is limited to the synaptic region. Neuron-induced electrical activity participates in this compartmentalization by promoting the repression of AChR expression in the extrasynaptic regions. Here, we show that the corepressor CtBP1 (C-terminal binding protein 1) is present on the myogenin promoter together with repressive histone marks. shRNA-mediated downregulation of CtBP1 expression is sufficient to derepress myogenin and AChR expression in innervated muscle. Upon denervation, CtBP1 is displaced from the myogenin promoter and relocates to the cytoplasm, while repressive histone marks are replaced by activating ones concomitantly to the activation of myogenin expression. We also observed that upon denervation the p21-activated kinase 1 (PAK1) expression is upregulated, suggesting that phosphorylation by PAK1 may be involved in the relocation of CtBP1. Indeed, preventing CtBP1 Ser158 phosphorylation induces CtBP1 accumulation in the nuclei and abrogates the activation of myogenin and AChR expression. Altogether, these findings reveal a molecular mechanism to account for the coordinated control of chromatin modifications and muscle gene expression by presynaptic neurons via a PAK1/CtBP1 pathway. PMID:26416879

  13. PAK1 and CtBP1 Regulate the Coupling of Neuronal Activity to Muscle Chromatin and Gene Expression.

    PubMed

    Thomas, Jean-Luc; Moncollin, Vincent; Ravel-Chapuis, Aymeric; Valente, Carmen; Corda, Daniela; Méjat, Alexandre; Schaeffer, Laurent

    2015-12-01

    Acetylcholine receptor (AChR) expression in innervated muscle is limited to the synaptic region. Neuron-induced electrical activity participates in this compartmentalization by promoting the repression of AChR expression in the extrasynaptic regions. Here, we show that the corepressor CtBP1 (C-terminal binding protein 1) is present on the myogenin promoter together with repressive histone marks. shRNA-mediated downregulation of CtBP1 expression is sufficient to derepress myogenin and AChR expression in innervated muscle. Upon denervation, CtBP1 is displaced from the myogenin promoter and relocates to the cytoplasm, while repressive histone marks are replaced by activating ones concomitantly to the activation of myogenin expression. We also observed that upon denervation the p21-activated kinase 1 (PAK1) expression is upregulated, suggesting that phosphorylation by PAK1 may be involved in the relocation of CtBP1. Indeed, preventing CtBP1 Ser158 phosphorylation induces CtBP1 accumulation in the nuclei and abrogates the activation of myogenin and AChR expression. Altogether, these findings reveal a molecular mechanism to account for the coordinated control of chromatin modifications and muscle gene expression by presynaptic neurons via a PAK1/CtBP1 pathway. PMID:26416879

  14. Palmitoylation regulates plasma membrane–nuclear shuttling of R7BP, a novel membrane anchor for the RGS7 family

    PubMed Central

    Drenan, Ryan M.; Doupnik, Craig A.; Boyle, Maureen P.; Muglia, Louis J.; Huettner, James E.; Linder, Maurine E.; Blumer, Kendall J.

    2005-01-01

    The RGS7 (R7) family of RGS proteins bound to the divergent Gβ subunit Gβ5 is a crucial regulator of G protein–coupled receptor (GPCR) signaling in the visual and nervous systems. Here, we identify R7BP, a novel neuronally expressed protein that binds R7–Gβ5 complexes and shuttles them between the plasma membrane and nucleus. Regional expression of R7BP, Gβ5, and R7 isoforms in brain is highly coincident. R7BP is palmitoylated near its COOH terminus, which targets the protein to the plasma membrane. Depalmitoylation of R7BP translocates R7BP–R7–Gβ5 complexes from the plasma membrane to the nucleus. Compared with nonpalmitoylated R7BP, palmitoylated R7BP greatly augments the ability of RGS7 to attenuate GPCR-mediated G protein–regulated inward rectifying potassium channel activation. Thus, by controlling plasma membrane nuclear–shuttling of R7BP–R7–Gβ5 complexes, reversible palmitoylation of R7BP provides a novel mechanism that regulates GPCR signaling and potentially transduces signals directly from the plasma membrane to the nucleus. PMID:15897264

  15. Tax1BP1 interacts with papillomavirus E2 and regulates E2-dependent transcription and stability.

    PubMed

    Wang, Xiaoyu; Naidu, Samisubbu R; Sverdrup, Francis; Androphy, Elliot J

    2009-03-01

    The papillomavirus E2 proteins regulate viral replication, gene transcription, and genome maintenance by interacting with other viral and host proteins. From a yeast two-hybrid screen, we identified the cellular protein Tax1BP1 as a novel binding partner of human papillomavirus type 18 (HPV18) E2. Tax1BP1 also interacts with the HPV16 and bovine papillomavirus type 1 (BPV1) E2 proteins, with the C-terminal region of Tax1BP1 interacting with the N-terminal transactivation domain of BPV1 E2. Tax1BP1 complexes with p300 and acts synergistically as a coactivator with p300 to enhance E2-dependent transcription. Using chromatin immunoprecipitation assays, we show that Tax1BP1 and E2 localize to the long control region on the BPV1 genome. Tax1BP1 was recently reported to bind ubiquitin and to function as an essential component of an A20 ubiquitin-editing complex. We demonstrate that Tax1BP1 plays a role in the regulation of the steady-state level of E2 by preventing its proteasomal degradation. These studies provide new insights into the regulation of E2 functions. PMID:19109394

  16. A novel 26 bp deletion [HBB: c.20_45del26bp] in exon 1 of the β-globin gene causing β-thalassemia major.

    PubMed

    Edison, Eunice S; Venkatesan, Rajkumar S; Govindanattar, Sankari Devi; George, Biju; Shaji, Ramachandran V

    2012-01-01

    Molecular characterization of β-thalassemia (β-thal) is essential in prevention and in understanding the biology of the disease. Deletion mutations are relatively uncommon in β-thal. In this report, we describe a novel 26 bp deletion from codon 6 to codon 14 in the β-globin in a consanguineous family from Tamil Nadu, India. This novel mutation causes a shift in the normal reading frame of the β-globin coding sequence, and consequently, a premature chain termination of translation due to the creation of a stop codon at the position of codon 21. The identification of this novel deletional mutation adds to the repertoire of β-thal mutations in India. PMID:22233277

  17. Recruitment of histone methyltransferase G9a mediates transcriptional repression of Fgf21 gene by E4BP4 protein.

    PubMed

    Tong, Xin; Zhang, Deqiang; Buelow, Katie; Guha, Anirvan; Arthurs, Blake; Brady, Hugh J M; Yin, Lei

    2013-02-22

    The liver responds to fasting-refeeding cycles by reprogramming expression of metabolic genes. Fasting potently induces one of the key hepatic hormones, fibroblast growth factor 21 (FGF21), to promote lipolysis, fatty acid oxidation, and ketogenesis, whereas refeeding suppresses its expression. We previously reported that the basic leucine zipper transcription factor E4BP4 (E4 binding protein 4) represses Fgf21 expression and disrupts its circadian oscillations in cultured hepatocytes. However, the epigenetic mechanism for E4BP4-dependent suppression of Fgf21 has not yet been addressed. Here we present evidence that histone methyltransferase G9a mediates E4BP4-dependent repression of Fgf21 during refeeding by promoting repressive histone modification. We find that Fgf21 expression is up-regulated in E4bp4 knock-out mouse liver. We demonstrate that the G9a-specific inhibitor BIX01294 abolishes suppression of the Fgf21 promoter activity by E4BP4, whereas overexpression of E4bp4 leads to increased levels of dimethylation of histone 3 lysine 9 (H3K9me2) around the Fgf21 promoter region. Furthermore, we also show that E4BP4 interacts with G9a, and knockdown of G9a blocks repression of Fgf21 promoter activity and expression in cells overexpressing E4bp4. A G9a mutant lacking catalytic activity, due to deletion of the SET domain, fails to inhibit the Fgf21 promoter activity. Importantly, acute hepatic knockdown by adenoviral shRNA targeting G9a abolishes Fgf21 repression by refeeding, concomitant with decreased levels of H3K9me2 around the Fgf21 promoter region. In summary, we show that G9a mediates E4BP4-dependent suppression of hepatic Fgf21 by enhancing histone methylation (H3K9me2) of the Fgf21 promoter. PMID:23283977

  18. Expression of DNA damage checkpoint 53BP1 is correlated with prognosis, cell proliferation and apoptosis in colorectal cancer

    PubMed Central

    Bi, Jianping; Huang, Ai; Liu, Tao; Zhang, Tao; Ma, Hong

    2015-01-01

    53BP1, an important mediator of DNA damage checkpoint, plays an essential role in maintaining the cell genome stability, and the aberrant expression of 53BP1 was found to contribute to tumor occurrence and development. In this study, we explored the clinical significance of 53BP1 expression in colorectal cancer and investigated the effects of 53BP1 expression on tumor cell proliferation and apoptosis and its possible mechanisms. Immunohistochemical analysis was performed to detect the expression of 53BP1 in 95 cases of tumor tissues. After establishment of shRNA-mediated knockdown stable HCT-116 cell lines, cell proliferation, apoptosis and cell cycle distribution were detected by MTT and flow cytometry, and expression of up-and down-steam related proteins as γ-H2AX, CHK2 and P53 were tested by Western blot. 53BP1 intensity was found to be associated with tumor location (P < 0.05), and the low expression of 53BP1 revealed decreased survival time compared with high expression in subgroups as male, tumor size > 5 cm, tumor located at right side, T stage as T3-T4, N0, clinical stage as I-II (P < 0.05). In vitro, shRNA-mediated loss of 53BP1 obviously inhibited HCT-116 tumor cell apoptosis, promoted cell proliferation and increased accumulation of cells in S phase. Meanwhile, the expression of γ-H2AX, CHK2 and P53 was significantly reduced (P < 0.05). Our findings suggest 53BP1 may serve as a candidate biomarker for predicting prognosis and disease development in colorectal cancer. PMID:26261485

  19. Feline Calicivirus Infection Disrupts Assembly of Cytoplasmic Stress Granules and Induces G3BP1 Cleavage

    PubMed Central

    Humoud, Majid N.; Doyle, Nicole; Royall, Elizabeth; Willcocks, Margaret M.; Sorgeloos, Frederic; van Kuppeveld, Frank; Roberts, Lisa O.; Goodfellow, Ian G.; Langereis, Martijn A.

    2016-01-01

    ABSTRACT In response to stress such as virus infection, cells can stall translation by storing mRNAs away in cellular compartments called stress granules (SGs). This defense mechanism favors cell survival by limiting the use of energy and nutrients until the stress is resolved. In some cases it may also block viral propagation as viruses are dependent on the host cell resources to produce viral proteins. Human norovirus is a member of the Caliciviridae family responsible for gastroenteritis outbreaks worldwide. Previous studies on caliciviruses have identified mechanisms by which they can usurp the host translational machinery, using the viral protein genome-linked VPg, or regulate host protein synthesis through the mitogen-activated protein kinase (MAPK) pathway. Here, we examined the effect of feline calicivirus (FCV) infection on SG accumulation. We show that FCV infection impairs the assembly of SGs despite an increased phosphorylation of eukaryotic initiation factor eIF2α, a hallmark of stress pathway activation. Furthermore, SGs did not accumulate in FCV-infected cells that were stressed with arsenite or hydrogen peroxide. FCV infection resulted in the cleavage of the SG-nucleating protein Ras-GTPase activating SH3 domain-binding protein (G3BP1), which is mediated by the viral 3C-like proteinase NS6Pro. Using mutational analysis, we identified the FCV-induced cleavage site within G3BP1, which differs from the poliovirus 3C proteinase cleavage site previously identified. Finally, we showed that NS6Pro-mediated G3BP1 cleavage impairs SG assembly. In contrast, murine norovirus (MNV) infection did not impact arsenite-induced SG assembly or G3BP1 integrity, suggesting that related caliciviruses have distinct effects on the stress response pathway. IMPORTANCE Human noroviruses are a major cause of viral gastroenteritis, and it is important to understand how they interact with the infected host cell. Feline calicivirus (FCV) and murine norovirus (MNV) are used as

  20. Pilot-scale treatability test plan for the 200-BP-5 operable unit

    SciTech Connect

    Not Available

    1994-08-01

    This document presents the treatability test plan for pilot-scale pump and treat testing at the 200-BP-5 Operable Unit. This treatability test plan has been prepared in response to an agreement between the U.S. Department of Energy (DOE), the U.S. Environmental Protection Agency (EPA), and the State of Washington Department of Ecology (Ecology), as documented in Hanford Federal Facility Agreement and Consent Order (Tri-Party Agreement, Ecology et al. 1989a) Change Control Form M-13-93-03 (Ecology et al. 1994) and a recent 200 NPL Agreement Change Control Form (Appendix A). The agreement also requires that, following completion of the activities described in this test plan, a 200-BP-5 Operable Unit Interim Remedial Measure (IRM) Proposed Plan be developed for use in preparing an Interim Action Record of Decision (ROD). The IRM Proposed Plan will be supported by the results of this treatability test plan, as well as by other 200-BP-5 Operable Unit activities (e.g., development of a qualitative risk assessment). Once issued, the Interim Action ROD will specify the interim action(s) for groundwater contamination at the 200-BP-5 Operable Unit. The treatability test approach is to conduct a pilot-scale pump and treat test for each of the two contaminant plumes associated with the 200-BP-5 Operable Unit. Primary contaminants of concern are {sup 99}Tc and {sup 60}Co for underwater affected by past discharges to the 216-BY Cribs, and {sup 90}Sr, {sup 239/240}Pu, and Cs for groundwater affected by past discharges to the 216-B-5 Reverse Well. The purpose of the pilot-scale treatability testing presented in this testplan is to provide the data basis for preparing an IRM Proposed Plan. To achieve this objective, treatability testing must: Assess the performance of groundwater pumping with respect to the ability to extract a significant amount of the primary contaminant mass present in the two contaminant plumes.

  1. BP-Broker use-cases in the UncertWeb framework

    NASA Astrophysics Data System (ADS)

    Roncella, Roberto; Bigagli, Lorenzo; Schulz, Michael; Stasch, Christoph; Proß, Benjamin; Jones, Richard; Santoro, Mattia

    2013-04-01

    The UncertWeb framework is a distributed, Web-based Information and Communication Technology (ICT) system to support scientific data modeling in presence of uncertainty. We designed and prototyped a core component of the UncertWeb framework: the Business Process Broker. The BP-Broker implements several functionalities, such as: discovery of available processes/BPs, preprocessing of a BP into its executable form (EBP), publication of EBPs and their execution through a workflow-engine. According to the Composition-as-a-Service (CaaS) approach, the BP-Broker supports discovery and chaining of modeling resources (and processing resources in general), providing the necessary interoperability services for creating, validating, editing, storing, publishing, and executing scientific workflows. The UncertWeb project targeted several scenarios, which were used to evaluate and test the BP-Broker. The scenarios cover the following environmental application domains: biodiversity and habitat change, land use and policy modeling, local air quality forecasting, and individual activity in the environment. This work reports on the study of a number of use-cases, by means of the BP-Broker, namely: - eHabitat use-case: implements a Monte Carlo simulation performed on a deterministic ecological model; an extended use-case supports inter-comparison of model outputs; - FERA use-case: is composed of a set of models for predicting land-use and crop yield response to climatic and economic change; - NILU use-case: is composed of a Probabilistic Air Quality Forecasting model for predicting concentrations of air pollutants; - Albatross use-case: includes two model services for simulating activity-travel patterns of individuals in time and space; - Overlay use-case: integrates the NILU scenario with the Albatross scenario to calculate the exposure to air pollutants of individuals. Our aim was to prove the feasibility of describing composite modeling processes with a high-level, abstract

  2. Characterization of the Raptor/4E-BP1 Interaction by Chemical Cross-linking Coupled with Mass Spectrometry Analysis*

    PubMed Central

    Coffman, Kimberly; Yang, Bing; Lu, Jie; Tetlow, Ashley L.; Pelliccio, Emelia; Lu, Shan; Guo, Da-Chuan; Tang, Chun; Dong, Meng-Qiu; Tamanoi, Fuyuhiko

    2014-01-01

    mTORC1 plays critical roles in the regulation of protein synthesis, growth, and proliferation in response to nutrients, growth factors, and energy conditions. One of the substrates of mTORC1 is 4E-BP1, whose phosphorylation by mTORC1 reverses its inhibitory action on eIF4E, resulting in the promotion of protein synthesis. Raptor in mTOR complex 1 is believed to recruit 4E-BP1, facilitating phosphorylation of 4E-BP1 by the kinase mTOR. We applied chemical cross-linking coupled with mass spectrometry analysis to gain insight into interactions between mTORC1 and 4E-BP1. Using the cross-linking reagent bis[sulfosuccinimidyl] suberate, we showed that Raptor can be cross-linked with 4E-BP1. Mass spectrometric analysis of cross-linked Raptor-4E-BP1 led to the identification of several cross-linked peptide pairs. Compilation of these peptides revealed that the most N-terminal Raptor N-terminal conserved domain (in particular residues from 89 to 180) of Raptor is the major site of interaction with 4E-BP1. On 4E-BP1, we found that cross-links with Raptor were clustered in the central region (amino acid residues 56–72) we call RCR (Raptor cross-linking region). Intramolecular cross-links of Raptor suggest the presence of two structured regions of Raptor: one in the N-terminal region and the other in the C-terminal region. In support of the idea that the Raptor N-terminal conserved domain and the 4E-BP1 central region are closely located, we found that peptides that encompass the RCR of 4E-BP1 inhibit cross-linking and interaction of 4E-BP1 with Raptor. Furthermore, mutations of residues in the RCR decrease the ability of 4E-BP1 to serve as a substrate for mTORC1 in vitro and in vivo. PMID:24403073

  3. Chikungunya virus nsP3 blocks stress granule assembly by recruitment of G3BP into cytoplasmic foci.

    PubMed

    Fros, Jelke J; Domeradzka, Natalia E; Baggen, Jim; Geertsema, Corinne; Flipse, Jacky; Vlak, Just M; Pijlman, Gorben P

    2012-10-01

    Chikungunya virus nonstructural protein nsP3 has an essential but unknown role in alphavirus replication and interacts with Ras-GAP SH3 domain-binding protein (G3BP). Here we describe the first known function of nsP3, to inhibit stress granule assembly by recruiting G3BP into cytoplasmic foci. A conserved SH3 domain-binding motif in nsP3 is essential for both nsP3-G3BP interactions and viral RNA replication. This study reveals a novel role for nsP3 as a regulator of the cellular stress response. PMID:22837213

  4. Chikungunya Virus nsP3 Blocks Stress Granule Assembly by Recruitment of G3BP into Cytoplasmic Foci

    PubMed Central

    Fros, Jelke J.; Domeradzka, Natalia E.; Baggen, Jim; Geertsema, Corinne; Flipse, Jacky; Vlak, Just M.

    2012-01-01

    Chikungunya virus nonstructural protein nsP3 has an essential but unknown role in alphavirus replication and interacts with Ras-GAP SH3 domain-binding protein (G3BP). Here we describe the first known function of nsP3, to inhibit stress granule assembly by recruiting G3BP into cytoplasmic foci. A conserved SH3 domain-binding motif in nsP3 is essential for both nsP3-G3BP interactions and viral RNA replication. This study reveals a novel role for nsP3 as a regulator of the cellular stress response. PMID:22837213

  5. 53BP1 mediates the fusion of mammalian telomeres rendered dysfunctional by DNA-PKcs loss or inhibition.

    PubMed

    Rybanska-Spaeder, Ivana; Ghosh, Rajib; Franco, Sonia

    2014-01-01

    Telomere dysfunction promotes genomic instability and carcinogenesis via inappropriate end-to-end chromosomal rearrangements, or telomere fusions. Previous work indicates that the DNA Damage Response (DDR) factor 53BP1 promotes the fusion of telomeres rendered dysfunctional by loss of TRF2, but is dispensable for the fusion of telomeres lacking Pot1 or critically shortened (in telomerase-deficient mice). Here, we examine a role for 53BP1 at telomeres rendered dysfunctional by loss or catalytic inhibition of DNA-PKcs. Using mouse embryonic fibroblasts lacking 53BP1 and/or DNA-PKcs, we show that 53BP1 deficiency suppresses G1-generated telomere fusions that normally accumulate in DNA-PKcs-deficient fibroblasts with passage. Likewise, we find that 53BP1 promotes telomere fusions during the replicative phases of the cell cycle in cells treated with the specific DNA-PKcs inhibitor NU7026. However, telomere fusions are not fully abrogated in DNA-PKcs-inhibited 53BP1-deficient cells, but occur with a frequency approximately 10-fold lower than in control 53BP1-proficient cells. Treatment with PARP inhibitors or PARP1 depletion abrogates residual fusions, while Ligase IV depletion has no measurable effect, suggesting that PARP1-dependent alternative end-joining operates at low efficiency at 53BP1-deficient, DNA-PKcs-inhibited telomeres. Finally, we have also examined the requirement for DDR factors ATM, MDC1 or H2AX in this context. We find that ATM loss or inhibition has no measurable effect on the frequency of NU7026-induced fusions in wild-type MEFs. Moreover, analysis of MEFs lacking both ATM and 53BP1 indicates that ATM is also dispensable for telomere fusions via PARP-dependent end-joining. In contrast, loss of either MDC1 or H2AX abrogates telomere fusions in response to DNA-PKcs inhibition, suggesting that these factors operate upstream of both 53BP1-dependent and -independent telomere rejoining. Together, these experiments define a novel requirement for 53BP1 in

  6. Nejapa Tephra: The youngest (c. 1 ka BP) highly explosive hydroclastic eruption in western Managua (Nicaragua)

    NASA Astrophysics Data System (ADS)

    Rausch, Juanita; Schmincke, Hans-Ulrich

    2010-05-01

    Nejapa Maar (2.5 × 1.4 km, c. 120 m deep), the largest maar along the 15-km-long Holocene Nejapa-Miraflores Lineament (NML), is the source vent of the youngest relatively widespread basaltic tholeiitic tephra blanket (Nejapa Tephra: NT) in western central Nicaragua, as shown by isopachs and isopleths (Rausch and Schmincke, 2008). The NT covers an area of > 10 km 2 in W/NW Managua. The minimum total magma volume erupted is estimated as 0.09 km 3. Juvenile, dominantly slightly vesicular (20-40 vol.%) basically tachylitic cauliflower-shaped lapilli with an average density of 2.1 g/cm 3, make up > 90 vol.% of the deposit, while lithoclasts comprise < 10 vol.% except proximally. This, the paucity of fine-grained tuffs and the dominant plane-parallel bedding all suggest fragmentation by shallow interaction of a rising magma starting to vesiculate and fragment pyroclastically with external water. The complex particles so generated erupted in moderately high eruption columns (at least 7-10 km) and were dominantly deposited as dry to damp, warm to cool fallout. Minor surge transport is inferred from fine-grained, locally cross-bedded tephra beds chiefly north of Nejapa and just west of Asososca Maars. Synvolcanic faulting along the NML is inferred. Faults in the study area indicate that activation of the N-S-trending Nejapa-Miraflores Fault (NMF), representing the western flank of Managua Graben, preceded deposition of NT and underlying Masaya Tuff (c.1.8 ka BP), Chiltepe Pumice (c. 1.9 ka BP) and Masaya Triple Layer (2.1 ka BP). The NT deposit is underlain regionally by a paleosol and topped by a soil. The basal paleosol contains pottery sherds made by the Usulután negative technique during the Late Formative period (700 BCE-300 CE) (2.7-1.7 ka BP). The soil overlying NT contains pottery related to the Ometepe technique dated as between 1350 and 1550 CE (650-450 a BP). These, and the radiocarbon dates of the pottery-bearing paleosols (1245 ± 125 and 535 ± 110 a BP

  7. Two-step regulation of Ad4BP/SF-1 gene transcription during fetal adrenal development: initiation by a Hox-Pbx1-Prep1 complex and maintenance via autoregulation by Ad4BP/SF-1.

    PubMed

    Zubair, Mohamad; Ishihara, Satoru; Oka, Sanae; Okumura, Katsuzumi; Morohashi, Ken-ichirou

    2006-06-01

    The orphan nuclear receptor Ad4BP/SF-1 (adrenal 4 binding protein/steroidogenic factor 1) is essential for the proper development and function of reproductive and steroidogenic tissues. Although the expression of Ad4BP/SF-1 is specific for those tissues, the mechanisms underlying this tissue-specific expression remain unknown. In this study, we used transgenic mouse assays to examine the regulation of the tissue-specific expression of Ad4BP/SF-1. An investigation of the entire Ad4BP/SF-1 gene locus revealed a fetal adrenal enhancer (FAdE) in intron 4 containing highly conserved binding sites for Pbx-Prep, Pbx-Hox, and Ad4BP/SF-1. Transgenic assays revealed that the Ad4 sites, together with Ad4BP/SF-1, develop an autoregulatory loop and thereby maintain transcription, while the Pbx/Prep and Pbx/Hox sites initiate transcription prior to the establishment of the autoregulatory loop. Indeed, a limited number of Hox family members were found to be expressed in the adrenal primordia. Whether a true fetal-type adrenal cortex is present in mice remained controversial, and this argument was complicated by the postnatal development of the so-called X zone. Using transgenic mice with lacZ driven by the FAdE, we clearly identified a fetal adrenal cortex in mice, and the X zone is the fetal adrenal cells accumulated at the juxtamedullary region after birth. PMID:16705164

  8. G3BP1, G3BP2 and CAPRIN1 Are Required for Translation of Interferon Stimulated mRNAs and Are Targeted by a Dengue Virus Non-coding RNA

    PubMed Central

    Bidet, Katell; Dadlani, Dhivya; Garcia-Blanco, Mariano A.

    2014-01-01

    Viral RNA-host protein interactions are critical for replication of flaviviruses, a genus of positive-strand RNA viruses comprising major vector-borne human pathogens including dengue viruses (DENV). We examined three conserved host RNA-binding proteins (RBPs) G3BP1, G3BP2 and CAPRIN1 in dengue virus (DENV-2) infection and found them to be novel regulators of the interferon (IFN) response against DENV-2. The three RBPs were required for the accumulation of the protein products of several interferon stimulated genes (ISGs), and for efficient translation of PKR and IFITM2 mRNAs. This identifies G3BP1, G3BP2 and CAPRIN1 as novel regulators of the antiviral state. Their antiviral activity was antagonized by the abundant DENV-2 non-coding subgenomic flaviviral RNA (sfRNA), which bound to G3BP1, G3BP2 and CAPRIN1, inhibited their activity and lead to profound inhibition of ISG mRNA translation. This work describes a new and unexpected level of regulation for interferon stimulated gene expression and presents the first mechanism of action for an sfRNA as a molecular sponge of anti-viral effectors in human cells. PMID:24992036

  9. G3BP1 promotes stress-induced RNA granule interactions to preserve polyadenylated mRNA

    PubMed Central

    Aulas, Anaïs; Caron, Guillaume; Gkogkas, Christos G.; Mohamed, Nguyen-Vi; Destroismaisons, Laurie; Sonenberg, Nahum; Leclerc, Nicole; Parker, J. Alex

    2015-01-01

    G3BP1, a target of TDP-43, is required for normal stress granule (SG) assembly, but the functional consequences of failed SG assembly remain unknown. Here, using both transformed cell lines and primary neurons, we investigated the functional impact of this disruption in SG dynamics. While stress-induced translational repression and recruitment of key SG proteins was undisturbed, depletion of G3BP1 or its upstream regulator TDP-43 disturbed normal interactions between SGs and processing bodies (PBs). This was concomitant with decreased SG size, reduced SG–PB docking, and impaired preservation of polyadenylated mRNA. Reintroduction of G3BP1 alone was sufficient to rescue all of these phenotypes, indicating that G3BP1 is essential for normal SG–PB interactions and SG function. PMID:25847539

  10. A Damage-Independent Role for 53BP1 that Impacts Break Order and Igh Architecture during Class Switch Recombination.

    PubMed

    Rocha, Pedro P; Raviram, Ramya; Fu, Yi; Kim, JungHyun; Luo, Vincent M; Aljoufi, Arafat; Swanzey, Emily; Pasquarella, Alessandra; Balestrini, Alessia; Miraldi, Emily R; Bonneau, Richard; Petrini, John; Schotta, Gunnar; Skok, Jane A

    2016-06-28

    During class switch recombination (CSR), B cells replace the Igh Cμ or δ exons with another downstream constant region exon (CH), altering the antibody isotype. CSR occurs through the introduction of AID-mediated double-strand breaks (DSBs) in switch regions and subsequent ligation of broken ends. Here, we developed an assay to investigate the dynamics of DSB formation in individual cells. We demonstrate that the upstream switch region Sμ is first targeted during recombination and that the mechanism underlying this control relies on 53BP1. Surprisingly, regulation of break order occurs through residual binding of 53BP1 to chromatin before the introduction of damage and independent of its established role in DNA repair. Using chromosome conformation capture, we show that 53BP1 mediates changes in chromatin architecture that affect break order. Finally, our results explain how changes in Igh architecture in the absence of 53BP1 could promote inversional rearrangements that compromise CSR. PMID:27320916

  11. Photoluminescence properties of novel KBaBP2O8:M (M = Pb2+ and Bi3+) phosphors

    NASA Astrophysics Data System (ADS)

    Han, Bing; Zhang, Jie; Li, Pengju; Li, Jianliang; Bian, Yang; Shi, Hengzhen

    2014-11-01

    A series of novel inorganic phosphors KBa1-xPbxBP2O8 and K1+xBa1-2xBixBP2O8 (0.01 ⩽ x ⩽ 0.08) were synthesized by using a solid-state reaction technique at high-temperature and their photoluminescence properties were investigated. The dependence of the emission intensity on the Pb2+ and Bi3+ concentration for the KBa1-xPbxBP2O8 and K1+xBa1-2xBixBP2O8 was studied, in which the optimal concentration as well as the critical transfer distance Rc for Pb2+ and Bi3+ was obtained and determined. The as-prepared phosphors can be effectively excited with ultraviolet (UV), and exhibit UV - blue emission with large Stokes shift. The above work indicates these phosphors could be potential candidates for application in UV lamps industry.

  12. Identification of negative transcriptional factor E4BP4-binding site in the mouse circadian-regulated gene Mdr2.

    PubMed

    Kotaka, Maki; Onishi, Yoshiaki; Ohno, Tomoya; Akaike, Toshihiro; Ishida, Norio

    2008-03-01

    The hepatic transporter Mdr2 is an ATP-binding cassette transporter which excretes phosphatidylcholine into the bile. We showed that the level of Mdr2 mRNA oscillated in circadian fashion in mouse liver whereas such oscillation was dampened in the liver of Clock mutants. To examine transcriptional regulation of the Mdr2 gene we performed luciferase reporter assays using plasmid constructs containing the 5'-flanking region of the Mdr2 gene. Reporter assays using deletion constructs demonstrated that E4BP4 represses the transcriptional activity of the promoter including the D1 and D2 sites within four putative E4BP4-binding sites. Chromatin immunoprecipitation and gel shift assays showed that E4BP4 binds to the D2 site, but not to the D1 site. These data suggested that E4BP4 is a negative transcription factor for circadian Mdr2 mRNA expression. PMID:18242748

  13. Identification of glycogen synthase as a new substrate for stress-activated protein kinase 2b/p38beta.

    PubMed

    Kuma, Yvonne; Campbell, David G; Cuenda, Ana

    2004-04-01

    The endogenous glycogen synthase in extracts from mouse skeletal muscle, liver and brain bound specifically to SAPK2b (stress-activated protein kinase 2b)/p38b, but not to other members of the group of SAPK/p38 kinases. Glycogen synthase was phosphorylated in vitro more efficiently by SAPK2b/p38b than by SAPK2a/p38a, SAPK3/p38g or SAPK4/p38d. SAPK2b/p38b phosphorylated glycogen synthase in vitro at residues Ser644, Ser652, Thr718 and Ser724, two of which (Ser644 and Ser652) are also phosphorylated by glycogen synthase kinase 3. Thr718 and Ser724 are novel sites not known to be phosphorylated by other protein kinases. Glycogen synthase becomes phosphorylated at Ser644 in response to osmotic shock; this phosphorylation is prevented by pretreatment of the cells with SB 203580, which inhibits SAPK2a/p38a and SAPK2b/p38b activity. In vitro, phosphorylation of glycogen synthase by SAPK2b/p38b alone had no significant effect on its activity, indicating that phosphorylation at residue Ser644 itself is insufficient to decrease glycogen synthase activity. However, after phosphorylation by SAPK2b/p38b, subsequent phosphorylation at Ser640 by glycogen synthase kinase 3 decreased the activity of glycogen synthase. This decrease was not observed when SAPK2b/p38b activity was blocked with SB 203580. These results suggest that SAPK2b/p38b may be a priming kinase that allows glycogen synthase kinase 3 to phosphorylate Ser640 and thereby inhibit glycogen synthase activity. PMID:14680475

  14. Quantitative analysis of the interplay between hsc70 and its co-chaperone HspBP1

    PubMed Central

    Mahboubi, Hicham

    2015-01-01

    Background. Chaperones and their co-factors are components of a cellular network; they collaborate to maintain proteostasis under normal and harmful conditions. In particular, hsp70 family members and their co-chaperones are essential to repair damaged proteins. Co-chaperones are present in different subcellular compartments, where they modulate chaperone activities. Methods and Results. Our studies assessed the relationship between hsc70 and its co-factor HspBP1 in human cancer cells. HspBP1 promotes nucleotide exchange on hsc70, but has also chaperone-independent functions. We characterized the interplay between hsc70 and HspBP1 by quantitative confocal microscopy combined with automated image analyses and statistical evaluation. Stress and the recovery from insult changed significantly the subcellular distribution of hsc70, but had little effect on HspBP1. Single-cell measurements and regression analysis revealed that the links between the chaperone and its co-factor relied on (i) the physiological state of the cell and (ii) the subcellular compartment. As such, we identified a linear relationship and strong correlation between hsc70 and HspBP1 distribution in control and heat-shocked cells; this correlation changed in a compartment-specific fashion during the recovery from stress. Furthermore, we uncovered significant stress-induced changes in the colocalization between hsc70 and HspBP1 in the nucleus and cytoplasm. Discussion. Our quantitative approach defined novel properties of the co-chaperone HspBP1 as they relate to its interplay with hsc70. We propose that changes in cell physiology promote chaperone redistribution and thereby stimulate chaperone-independent functions of HspBP1. PMID:26713263

  15. Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

    PubMed Central

    Tsuda, Kengo; Kuwasako, Kanako; Takahashi, Mari; Someya, Tatsuhiko; Inoue, Makoto; Terada, Takaho; Kobayashi, Naohiro; Shirouzu, Mikako; Kigawa, Takanori; Tanaka, Akiko; Sugano, Sumio; Güntert, Peter; Muto, Yutaka; Yokoyama, Shigeyuki

    2009-01-01

    The CUG-binding protein 1 (CUG-BP1) is a member of the CUG-BP1 and ETR-like factors (CELF) family or the Bruno-like family and is involved in the control of splicing, translation and mRNA degradation. Several target RNA sequences of CUG-BP1 have been predicted, such as the CUG triplet repeat, the GU-rich sequences and the AU-rich element of nuclear pre-mRNAs and/or cytoplasmic mRNA. CUG-BP1 has three RNA-recognition motifs (RRMs), among which the third RRM (RRM3) can bind to the target RNAs on its own. In this study, we solved the solution structure of the CUG-BP1 RRM3 by hetero-nuclear NMR spectroscopy. The CUG-BP1 RRM3 exhibited a noncanonical RRM fold, with the four-stranded β-sheet surface tightly associated with the N-terminal extension. Furthermore, we determined the solution structure of the CUG-BP1 RRM3 in the complex with (UG)3 RNA, and discovered that the UGU trinucleotide is specifically recognized through extensive stacking interactions and hydrogen bonds within the pocket formed by the β-sheet surface and the N-terminal extension. This study revealed the unique mechanism that enables the CUG-BP1 RRM3 to discriminate the short RNA segment from other sequences, thus providing the molecular basis for the comprehension of the role of the RRM3s in the CELF/Bruno-like family. PMID:19553194

  16. Inhibition of 4E-BP1 Sensitizes U87 Glioblastoma Xenograft Tumors to Irradiation by Decreasing Hypoxia Tolerance

    SciTech Connect

    Dubois, Ludwig; Magagnin, Michael G.; Cleven, Arjen H.G.; Weppler, Sherry A.; Grenacher, Beat; Landuyt, Willy; Lieuwes, Natasja; Lambin, Philippe; Gorr, Thomas A.; Koritzinsky, Marianne

    2009-03-15

    Purpose: Eukaryotic initiation factor 4E (eIF4E) is an essential rate-limiting factor for cap-dependent translation in eukaryotic cells. Elevated eIF4E activity is common in many human tumors and is associated with disease progression. The growth-promoting effects of eIF4E are in turn negatively regulated by 4E-BP1. However, although 4E-BP1 harbors anti-growth activity, its expression is paradoxically elevated in some tumors. The aim of this study was to investigate the functional role of 4E-BP1 in the context of solid tumors. Methods and Materials: In vitro and in vivo growth properties, hypoxia tolerance, and response to radiation were assessed for HeLa and U87 cells, after stable expression of shRNA specific for 4E-BP1. Results: We found that loss of 4E-BP1 expression did not significantly alter in vitro growth but did accelerate the growth of U87 tumor xenografts, consistent with the growth-promoting function of deregulated eIF4E. However, cells lacking 4E-BP1 were significantly more sensitive to hypoxia-induced cell death in vitro. Furthermore, 4E-BP1 knockdown cells produced tumors more sensitive to radiation because of a reduction in the viable fraction of radioresistant hypoxic cells. Decreased hypoxia tolerance in the 4E-BP1 knockdown tumors was evident by increased cleaved caspase-3 levels and was associated with a reduction in adenosine triphosphate (ATP). Conclusions: Our results suggest that although tumors often demonstrate increases in cap-dependent translation, regulation of this activity is required to facilitate energy conservation, hypoxia tolerance, and tumor radioresistance. Furthermore, we suggest that targeting translational control may be an effective way to target hypoxic cells and radioresistance in metabolically hyperactive tumors.

  17. Helicobacter pylori cagA 12-bp insertion can be a marker for duodenal ulcer in Okinawa, Japan

    PubMed Central

    Matsuo, Yuichi; Shiota, Seiji; Matsunari, Osamu; Suzuki, Rumiko; Watada, Masahide; Binh, Tran Thanh; Kinjo, Nagisa; Kinjo, Fukunori; Yamaoka, Yoshio

    2013-01-01

    Backgrounds Helicobacter pylori cagA can be classified into mainly two types (East-Asian-type and Western-type cagA) according to the repeat regions located in the 3′ region. Recent studies showed that the Western-type cagA in strains from Okinawa, Japan formed a different cluster (J-Western-type cagA subtype). We also reported that J-Western-type cagA possess a 12-bp insertion located in the 5′ region of cagA sequence. Methods The prevalence of 12-bp insertion in cagA in Okinawa and the United States (U.S.) was examined by DNA sequencing. We then designed the primer pair which can detect the 12-bp insertion only by polymerase chain reaction (PCR). The prevalence of strains with 12-bp insertion was examined in 336 strains isolated from Okinawa by PCR. Results In case of Western-type cagA/vacA s1m2 strains, the prevalence of 12-bp insertion was significantly higher in strains isolated from Okinawa than that from the U.S. (P = 0.002). Phylogenetic tree showed that strains with 12-bp insertion formed two individual clusters within J-Western-type cagA subtype; one is from Okinawa and another is from the U.S. Our designed primer set showed high sensitivity (100%) and specificity (90.8%) in Okinawa. The 12-bp insertion was found in 23.7%, 14.3%, 4.2%, and 4.0% of strains with duodenal ulcer (DU), gastritis, gastric cancer (GC), and gastric ulcer (GU), respectively (P < 0.001 for DU vs. GU) in Okinawa. Conclusions Although the mechanisms are unknown, the presence of 12-bp insertion was associated with the presence of DU and might have a suppressive action on GU and GC. PMID:23190390

  18. IGF2BP2 Alternative Variants Associated with Glutamic Acid Decarboxylase Antibodies Negative Diabetes in Malaysian Subjects

    PubMed Central

    Salem, Sameer D.; Saif-Ali, Riyadh; Ismail, Ikram S.; Al-Hamodi, Zaid; Poh, Rozaida; Muniandy, Sekaran

    2012-01-01

    Background The association of Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) common variants (rs4402960 and rs1470579) with type 2 diabetes (T2D) has been performed in different populations. The aim of this study was to evaluate the association of alternative variants of IGF2BP2; rs6777038, rs16860234 and rs7651090 with glutamic acid decarboxylase antibodies (GADA) negative diabetes in Malaysian Subjects. Methods/Principal Findings IGF2BP2; rs6777038, rs16860234 and rs7651090 single nucleotide polymorphisms (SNPs) were genotyped in 1107 GADA negative diabetic patients and 620 control subjects of Asian from Malaysia. The additive genetic model adjusted for age, race, gender and BMI showed that alternative variants; rs6777038, rs16860234 and rs7651090 of IGF2BP2 associated with GADA negative diabetes (OR = 1.21; 1.36; 1.35, P = 0.03; 0.0004; 0.0002, respectively). In addition, the CCG haplotype and diplotype CCG-TCG increased the risk of diabetes (OR = 1.51, P = 0.01; OR = 2.36, P = 0.009, respectively). Conclusions/Significance IGF2BP2 alternative variants were associated with GADA negative diabetes. The IGF2BP2 haplotypes and diplotypes increased the risk of diabetes in Malaysian subject. PMID:23029108

  19. The basic leucine zipper transcription factor E4BP4 is essential for natural killer cell development.

    PubMed

    Gascoyne, Duncan M; Long, Elaine; Veiga-Fernandes, Henrique; de Boer, Jasper; Williams, Owen; Seddon, Benedict; Coles, Mark; Kioussis, Dimitris; Brady, Hugh J M

    2009-10-01

    Natural killer (NK) cells are a subset of lymphocytes crucial for innate immunity and modification of adaptive immune responses. In contrast to commitment to the T cell or B cell lineage, little is known about NK cell lineage commitment. Here we show that the basic leucine zipper (bZIP) transcription factor E4BP4 (also called NFIL3) is essential for generation of the NK cell lineage. E4BP4-deficient mice (Nfil3(-/-); called 'E4bp4(-/-)' here) had B cells, T cells and NKT cells but specifically lack NK cells and showed severely impaired NK cell-mediated cytotoxicity. Overexpression of E4bp4 was sufficient to increase NK cell production from hematopoietic progenitor cells. E4BP4 acted in a cell-intrinsic manner 'downstream' of the interleukin 15 receptor (IL-15R) and through the transcription factor Id2. E4bp4(-/-) mice may provide a model for definitive analysis of the contribution of NK cells to immune responses and pathologies. PMID:19749763

  20. Cell type-specific regulation of von Willebrand factor expression by the E4BP4 transcriptional repressor.

    PubMed

    Hough, Christine; Cuthbert, Carla D; Notley, Colleen; Brown, Christine; Hegadorn, Carol; Berber, Ergul; Lillicrap, David

    2005-02-15

    Mechanisms of tissue-restricted patterns of von Willebrand factor (VWF) expression involve activators and repressors that limit expression to endothelial cells and megakaryocytes. The relative transcriptional activity of the proximal VWF promoter was assessed in VWF-producing and -nonproducing cells, and promoter activity was highest in endothelial cells followed by megakaryocytes. Only basal VWF promoter activity was seen in nonendothelial cells. Here we identify a negative response element located at nucleotides (nts) +96/+105 and demonstrate, using chromatin immunoprecipitation (ChIP) analysis, that in vivo this sequence interacts with the E4BP4 transcriptional repressor. Differences in size and relative abundance of nuclear E4BP4 were observed. In HepG2 cells, low levels of larger forms of E4BP4 are present that directly interact with the negative response element. In VWF-expressing cells, high levels of smaller forms predominate with no evidence of direct DNA binding. However, in endothelial cells, mutation of the VWF E4BP4 binding motif not only restores but also further elevates VWF promoter activity, suggesting that E4BP4 may be part of a coordinated binding complex. These observations implicate this binding motif in repressing both activated and basal levels of VWF transcription by different cell type-specific mechanisms, and support the hypothesis that E4BP4 sequesters negative regulators of transcription, thereby enhancing activated gene expression. PMID:15498853

  1. Mass spectroscopic phosphoprotein mapping of Ral binding protein 1 (RalBP1/Rip1/RLIP76)

    SciTech Connect

    Herlevsen, Mikael C.; Theodorescu, Dan

    2007-10-12

    RalBP1, a multifunctional protein implicated in cancer cell proliferation, radiation and chemoresistance, and ligand dependent receptor internalization, is upregulated in bladder cancer and is a downstream effector of RalB, a GTPase associated with metastasis. RalBP1 can be regulated by phosphorylation by protein kinase C (PKC). No studies have comprehensively mapped RalBP1 phosphorylation sites or whether RalB affects these. We identified 14 phosphorylation sites of RalBP1 in human bladder carcinoma UMUC-3 and embryonic kidney derived 293T cells. The phosphorylated residues are concentrated at the N-terminus. Ten of the first 100 amino acids of the primary structure were phosphorylated. Nine were serine residues, and one a threonine. We evaluated the effect of RalB overexpression on RalBP1 phosphorylation and found the largest change in phosphorylation status at S463 and S645. Further characterization of these sites will provide novel insights on RalBP1 biology, its functional relationship to RalB and possible avenues for therapeutic intervention.

  2. Hybrid detectors improved time-lapse confocal microscopy of PML and 53BP1 nuclear body colocalization in DNA lesions.

    PubMed

    Foltánková, Veronika; Matula, Pavel; Sorokin, Dmitry; Kozubek, Stanislav; Bártová, Eva

    2013-04-01

    We used hybrid detectors (HyDs) to monitor the trajectories and interactions of promyelocytic leukemia (GFP-PML) nuclear bodies (NBs) and mCherry-53BP1-positive DNA lesions. 53BP1 protein accumulates in NBs that occur spontaneously in the genome or in γ-irradiation-induced foci. When we induced local DNA damage by ultraviolet irradiation, we also observed accumulation of 53BP1 proteins into discrete bodies, instead of the expected dispersed pattern. In comparison with photomultiplier tubes, which are used for standard analysis by confocal laser scanning microscopy, HyDs significantly eliminated photobleaching of GFP and mCherry fluorochromes during image acquisition. The low laser intensities used for HyD-based confocal analysis enabled us to observe NBs for the longer time periods, necessary for studies of the trajectories and interactions of PML and 53BP1 NBs. To further characterize protein interactions, we used resonance scanning and a novel bioinformatics approach to register and analyze the movements of individual PML and 53BP1 NBs. The combination of improved HyD-based confocal microscopy with a tailored bioinformatics approach enabled us to reveal damage-specific properties of PML and 53BP1 NBs. PMID:23410959

  3. Cloning, solubilization, and characterization of squalene synthase from Thermosynechococcus elongatus BP-1.

    PubMed

    Lee, Sungwon; Poulter, C Dale

    2008-06-01

    Squalene synthase (SQS) is a bifunctional enzyme that catalyzes the condensation of two molecules of farnesyl diphosphate (FPP) to give presqualene diphosphate (PSPP) and the subsequent rearrangement of PSPP to squalene. These reactions constitute the first pathway-specific steps in hopane biosynthesis in Bacteria and sterol biosynthesis in Eukarya. The genes encoding SQS were isolated from the hopane-producing bacteria Thermosynechococcus elongatus BP-1, Bradyrhizobium japonicum, and Zymomonas mobilis and cloned into an Escherichia coli expression system. The expressed proteins with a His(6) tag were found exclusively in inclusion bodies when no additives were used in the buffer. After extensive optimization, soluble recombinant T. elongatus BP-1 SQS was obtained when cells were disrupted and purified in buffers containing glycerol. The recombinant B. japonicum and Z. mobilis SQSs could not be solubilized under any of the expression and purification conditions used. Purified T. elongatus His(6)-SQS gave a single band at 42 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and molecular ion at m/z 41886 by electrospray mass spectrometry. Incubation with FPP and NADPH gave squalene as the sole product. Incubation of the enzyme with [(14)C]FPP in the absence of NADPH gave PSPP. The enzyme requires Mg(2+) for activity, has an optimum pH of 7.6, and is strongly stimulated by detergent. Under optimal conditions, the K(m) of FPP is 0.97 +/- 0.10 microM and the k(cat) is 1.74 +/- 0.04 s(-1). Zaragozic acid A, a potent inhibitor of mammalian, fungal, and Saccharomyces cerevisiae SQSs, also inhibited recombinant T. elongatus BP-1 SQS, with a 50% inhibitory concentration of 95.5 +/- 13.6 nM. PMID:18375558

  4. Feasibility study report for the 200-BP-1 operable unit. Revision 1

    SciTech Connect

    Not Available

    1994-01-01

    This feasibility study (FS) examines a range of alternatives and provides recommendations for selecting a preferred altemative for remediating contamination at the 200-BP-1 operable unit. The 200-BP-1 operable unit is located in the center of the Hanford Site along the northern boundary of the 200 East Area. The 241-BY Tank Farm is located immediately to the south of the operable unit. 200-BP-1 is a source operable unit with contaminated soils associated primarily with nine inactive cribs (known as the 216-B cribs). These cribs were used for disposal of low-level radioactive liquid waste from U Plant uranium recovery operations, and waste storage tank condensate from the adjacent 241-BY Tank Farm. The cribs used for disposal of U Plant waste were in operation from 1955--1965, and the cribs used for disposal of tank condensate were in operation from 1965-1975. In addition to the cribs, four unplanned releases of radioactive materials have occurred within the operable unit. Contaminated surface soils associated with the unplanned releases have been consolidated over the cribs and covered with clean soil to reduce contaminant migration and exposure. Discharge of wastes to the cribs has resulted in soil and groundwater contamination. The groundwater is being addressed as part of the 200 East Aggregate Area groundwater operable unit. Contaminated soils at the site can be categorized by the types of contaminants, their distribution in the soil column, and the risk posed by the various potential exposure pathways. Below the clean soil cover, the near surface soils contain low-:levels of contamination with cesium-137, radium-226, strontium-90, thorium-228 and uranium. The lifetime incremental cancer risk associated with these soils if they were exposed at the surface is 9 {times} 10{sup 5}.

  5. High-intensity geomagnetic field 'spike' observed at ca. 3000 cal BP in Texas, USA

    NASA Astrophysics Data System (ADS)

    Bourne, Mark D.; Feinberg, Joshua M.; Stafford, Thomas W.; Waters, Michael R.; Lundelius, Ernest; Forman, Steven L.

    2016-05-01

    By observing the fluctuations in direction and intensity of the Earth's magnetic field through time, we increase our understanding of the fluid motions of the Earth's outer core that sustain the geomagnetic field, the geodynamo. Recent archaeomagnetic studies in the Near East have found extremely rapid increases - 'spikes' - in geomagnetic field intensity at ca. 3000 yr cal BP. These observations have proved problematic for our current understanding of core-flow. However, until now, these geomagnetic spikes had not been observed outside of the Near East, where they have been preserved in metallurgical slag and fired, mud brick walls. We present a new, fully oriented, geomagnetic secular variation and relative palaeointensity (RPI) record for the last 17,000 yr from Hall's Cave, Texas, whose complete, >3.8 m thick sedimentary sequence spans from the present to 16 , 850 ± 110 RC yr BP (Modern to 20,600 cal BP). Within the stable, cool climate of the cave, pedogenic and bioturbation processes are negligible to non-existent, thereby limiting post-depositional physical and geochemical alteration of the magnetic record. The sub-aerial and subterranean setting of the sedimentary sequence in Hall's Cave enabled us to collect oriented palaeomagnetic cubes from a previously excavated stratigraphic section. The palaeomagnetic samples yielded high-quality vectors. An age model for the sequence, determined using 15 AMS 14C-dates on individual bones from microvertebrates, was combined with the palaeomagnetic data to construct a secular variation record. The record is in broad agreement with predictions by Holocene field models for the site's location. However, starting ca. 3000 yr ago, the RPI data indicate an almost four-fold increase in geomagnetic field intensity lasting several hundred years. This record presents well-dated evidence, obtained using conventional techniques, for the existence of a geomagnetic intensity spike in North America that is contemporaneous with the

  6. Identification and analysis of a 5-bp indel of a porcine BMP7 gene promoter.

    PubMed

    Lu, P; Feng, X; Zhou, J S; Liu, X B; Chen, Q X; Li, M

    2014-01-01

    Bone morphological protein7 (BMP7), a member of the transforming growth factor-β (TGF-β) family, was first identified because of its ability to induce ectopic chondro-osteogenesis in vivo. It also plays a crucial role in the growth, development, and physiological functioning of the reproductive system. Among intra-ovarian growth factors, many studies have shown that BMP7 plays a pivotal role in regulating the early phases of follicular growth. We detected a 5-bp insertion-deletion at 602 bp upstream from the transcription start site of the BMP7 gene promoter among 258 pigs of 3 breeds. Along with 2 homoduplex DNAs, another 4 previously unknown bands (named A, B, C, and D) were detected by non-denaturing polyacrylamide gel electrophoresis. By DNA sequencing, we found that PCR products from heterozygotes contained 2 homoduplexes and 4 heteroduplexes. Genetic polymorphism analysis revealed 3 genotypes (AA, AB, and BB) at this site; the distribution of these genotypes followed Hardy-Weinberg equilibrium. A was the dominant allele (0.715), and AA was the dominant genotype (0.500). The polymorphism information content value was calculated to be 0.325, the expected heterozygosity was 0.407, and effective number of alleles was 1.688, indicating an intermediate degree of polymorphism and good potential for selection and breeding. Highly significant differences were found between different breeds and distributions of genotypes. Based on correlation analysis, the 5-bp indel site does not significantly affect porcine reproductive traits (total number of births, number of piglets born alive, litter birth weight, and litter weight at 21 days; P>0.05), which was consistent with the results of genetic variation analysis. PMID:25036177

  7. Tying the loose ends together in DNA double strand break repair with 53BP1.

    PubMed

    Adams, Melissa M; Carpenter, Phillip B

    2006-01-01

    To maintain genomic stability and ensure the fidelity of chromosomal transmission, cells respond to various forms of genotoxic stress, including DNA double-stranded breaks (DSBs), through the activation of DNA damage response signaling networks. In response to DSBs as induced by ionizing radiation (IR), during DNA replication, or through immunoglobulin heavy chain (IgH) rearrangements in B cells of lymphoid origin, the phosphatidyl inositol-like kinase (PIK) kinases ATM (mutated in ataxia telangiectasia), ATR (ATM and Rad3-related kinase), and the DNA-dependent protein kinase (DNA-PK) activate signaling pathways that lead to DSB repair. DSBs are repaired by either of two major, non-mutually exclusive pathways: homologous recombination (HR) that utilizes an undamaged sister chromatid template (or homologous chromosome) and non- homologous end joining (NHEJ), an error prone mechanism that processes and joins broken DNA ends through the coordinated effort of a small set of ubiquitous factors (DNA-PKcs, Ku70, Ku80, artemis, Xrcc4/DNA lig IV, and XLF/Cernunnos). The PIK kinases phosphorylate a variety of effector substrates that propagate the DNA damage signal, ultimately resulting in various biological outputs that influence cell cycle arrest, transcription, DNA repair, and apoptosis. A variety of data has revealed a critical role for p53-binding protein 1 (53BP1) in the cellular response to DSBs including various aspects of p53 function. Importantly, 53BP1 plays a major role in suppressing translocations, particularly in B and T cells. This report will review past experiments and current knowledge regarding the role of 53BP1 in the DNA damage response. PMID:16945145

  8. Dufulin Activates HrBP1 to Produce Antiviral Responses in Tobacco

    PubMed Central

    Chen, Zhuo; Zeng, Mengjiao; Song, Baoan; Hou, Chengrui; Hu, Deyu; Li, Xiangyang; Wang, Zhenchao; Fan, Huitao; Bi, Liang; Liu, Jiaju; Yu, Dandan; Jin, Linhong; Yang, Song

    2012-01-01

    Background Dufulin is a new antiviral agent that is highly effective against plant viruses and acts by activating systemic acquired resistance (SAR) in plants. In recent years, it has been used widely to prevent and control tobacco and rice viral diseases in China. However, its targets and mechanism of action are still poorly understood. Methodology/Principal Findings Here, differential in-gel electrophoresis (DIGE) and classical two-dimensional electrophoresis (2-DE) techniques were combined with mass spectrometry (MS) to identify the target of Dufulin. More than 40 proteins were found to be differentially expressed (≥1.5 fold or ≤1.5 fold) upon Dufulin treatment in Nicotiana tabacum K326. Based on annotations in the Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) databases, these proteins were found to be related to disease resistance. Directed acyclic graph (DAG) analysis of the various pathways demonstrated harpin binding protein-1 (HrBP1) as the target of action of Dufulin. Additionally, western blotting, semi-quantitative reverse transcription polymerase chain reaction (RT-PCR), and real time PCR analyses were also conducted to identify the specific mechanism of action of Dufulin. Our results show that activation of HrBP1 triggers the salicylic acid (SA) signaling pathway and thereby produces antiviral responses in the plant host. A protective assay based on lesion counting further confirmed the antiviral activity of Dufulin. Conclusion This study identified HrBP1 as a target protein of Dufulin and that Dufulin can activate the SA signaling pathway to induce host plants to generate antiviral responses. PMID:22662252

  9. Initial formation of an indigenous crop complex in eastern North America at 3800 B.P

    PubMed Central

    Smith, Bruce D.; Yarnell, Richard A.

    2009-01-01

    Although geneticists and archaeologists continue to make progress world-wide in documenting the time and place of the initial domestication of a growing number of plants and animals, far less is known regarding the critically important context of coalescence of various species into distinctive sets or complexes of domesticates in each of the world's 10 or more independent centers of agricultural origin. In this article, the initial emergence of a crop complex is described for one of the best-documented of these independent centers, eastern North America (ENA). Before 4000 B.P. there is no indication of a crop complex in ENA, only isolated evidence for single indigenous domesticate species. By 3800 B.P., however, at least 5 domesticated seed-bearing plants formed a coherent complex in the river valley corridors of ENA. Accelerator mass spectrometer radiocarbon dates and reanalysis of archaeobotanical assemblages from a short occupation of the Riverton Site in Illinois documents the contemporary cultivation at 3800 B.P. of domesticated bottle gourd (Lagenaria siceraria), marshelder (Iva annua var. macrocarpa), sunflower (Helianthus annuus var. macrocarpus), and 2 cultivated varieties of chenopod (Chenopodium berlandieri), as well as the possible cultivation of Cucurbita pepo squash and little barley (Hordeum pusillum). Rather than marking either an abrupt developmental break or a necessary response to population-packing or compressed resource catchments, the coalescence of an initial crop complex in ENA appears to reflect an integrated expansion and enhancement of preexisting hunting and gathering economies that took place within a context of stable long-term adaptation to resource-rich river valley settings. PMID:19366669

  10. Initial formation of an indigenous crop complex in eastern North America at 3800 B.P.

    PubMed

    Smith, Bruce D; Yarnell, Richard A

    2009-04-21

    Although geneticists and archaeologists continue to make progress world-wide in documenting the time and place of the initial domestication of a growing number of plants and animals, far less is known regarding the critically important context of coalescence of various species into distinctive sets or complexes of domesticates in each of the world's 10 or more independent centers of agricultural origin. In this article, the initial emergence of a crop complex is described for one of the best-documented of these independent centers, eastern North America (ENA). Before 4000 B.P. there is no indication of a crop complex in ENA, only isolated evidence for single indigenous domesticate species. By 3800 B.P., however, at least 5 domesticated seed-bearing plants formed a coherent complex in the river valley corridors of ENA. Accelerator mass spectrometer radiocarbon dates and reanalysis of archaeobotanical assemblages from a short occupation of the Riverton Site in Illinois documents the contemporary cultivation at 3800 B.P. of domesticated bottle gourd (Lagenaria siceraria), marshelder (Iva annua var. macrocarpa), sunflower (Helianthus annuus var. macrocarpus), and 2 cultivated varieties of chenopod (Chenopodium berlandieri), as well as the possible cultivation of Cucurbita pepo squash and little barley (Hordeum pusillum). Rather than marking either an abrupt developmental break or a necessary response to population-packing or compressed resource catchments, the coalescence of an initial crop complex in ENA appears to reflect an integrated expansion and enhancement of preexisting hunting and gathering economies that took place within a context of stable long-term adaptation to resource-rich river valley settings. PMID:19366669

  11. Borobudur, a basin under volcanic influence: 361,000 years BP to present

    NASA Astrophysics Data System (ADS)

    Gomez, C.; Janin, M.; Lavigne, F.; Gertisser, R.; Charbonnier, S.; Lahitte, P.; Hadmoko, S. R.; Fort, M.; Wassmer, P.; Degroot, V.; Murwanto, H.

    2010-10-01

    Borobudur basin is located in Central Java (Indonesia), 30 km to the North of Yogyakarta City. The basin is famous for its UNESCO world heritage temple and for one of the world's most active volcanoes, Merapi, located to the East of Borobudur basin. Merapi is one of the three andesitic volcanoes that surround the basin: Merapi, Merbabu and Sumbing volcanoes. Therefore, volcanic activity has strongly influenced the evolution of Borobudur basin. The object of this contribution is to present the evolution of Borobudur basin over the last 161,000 years in the light of volcanic influence. The methodology and tools developed for this research span over different areas of expertise, from geochemistry, geology and geomorphology to remote sensing, GIS and archeology. Results highlight the following points: Two major volcanic events deposited volcaniclastic materials up to tens of meters thick ~ 119,000 years BP and ~ 31,000 years BP. in the Southern part of the Borobudur basin. The second volcanic event could correspond to the collapse of the older Ancient Merapi ( Camus et al., 2000) or Proto-Merapi Stage ( Newhall et al., 2000). There is no trace in the Borobudur basin of a large debris avalanche < 31,000 BP, indicating that the young debris avalanche inferred in the literature for Merapi Volcano was either too small to reach 20 km from the actual summit of Merapi; or, despite the orientation of the avalanche caldera rim on Merapi Volcano, the debris avalanche was deposited more towards the South, completely eroded or covered by younger deposits. There are several generations of paleolakes in the Borobudur basin. The latest one has shrunk until historical times, corroborating the theory of Newhall et al. (2000) and Murwanto et al. (2004) that Borobudur Temple was standing by a water body. Most of these paleolakes were impounded following volcanic events. Paleolakes most probably originated from the blockage of the hydrographic network by volcanic material. Borobudur

  12. Abundance distributions over the surfaces of magnetic ApBp stars: theoretical predictions

    NASA Astrophysics Data System (ADS)

    Alecian, G.

    2015-12-01

    Recently published empirical abundance maps, obtained through (Zeeman) Doppler mapping, do not currently agree with the abundance structures predicted by means of numerical models of atomic diffusion in magnetic atmospheres of ApBp stars. In a first step towards the resolution of these discrepancies, we present a state of the art grid of equilibrium abundance stratifications in the atmosphere of a magnetic Ap star with Teff = 10 000 K and log g = 4.0. A description of the behaviour of 16 chemical elements including predictions concerning the over- and/or underabundances over the stellar surface is followed by a discussion of the possible influence of presently neglected physical processes.

  13. Development of Novel Gas Brand Anti-Piracy System based on BP Neural Networks

    NASA Astrophysics Data System (ADS)

    Wang, L.; Zhang, Y. Y.; Ding, L.

    2006-10-01

    The Wireless-net Close-loop gas brand anti-piracy system introduced in this paper is a new type of brand piracy technical product based on BP neural network. It is composed by gas brand piracy label possessing gas exhalation resource, ARM embedded gas-detector, GPRS wireless module and data base of merchandise information. First, the system obtains the information on the special label through gas sensor array ,then the attained signals are transferred into ARM Embedded board and identified by artificial neural network, and finally turns back the outcome of data collection and identification to the manufactures with the help of GPRS module.

  14. Application of BP Neural Network Based on Genetic Algorithm in Quantitative Analysis of Mixed GAS

    NASA Astrophysics Data System (ADS)

    Chen, Hongyan; Liu, Wenzhen; Qu, Jian; Zhang, Bing; Li, Zhibin

    Aiming at the problem of mixed gas detection in neural network and analysis on the principle of gas detection. Combining BP algorithm of genetic algorithm with hybrid gas sensors, a kind of quantitative analysis system of mixed gas is designed. The local minimum of network learning is the main reason which affects the precision of gas analysis. On the basis of the network study to improve the learning algorithms, the analyses and tests for CO, CO2 and HC compounds were tested. The results showed that the above measures effectively improve and enhance the accuracy of the neural network for gas analysis.

  15. The remarkably unremarkable global abundance variations of the magnetic Bp star HD 133652

    NASA Astrophysics Data System (ADS)

    Bailey, J. D.; Landstreet, J. D.

    2015-08-01

    Context. In recent years, significant effort has been made to understand how the magnetic field strengths and atmospheric chemical abundances of Ap/Bp stars evolve during their main sequence lifetime by identifying a large number of Ap/Bp stars with accurately known ages. As a next step, these stars should be studied individually and in detail to offer further insight into the physics of how such main sequence stars evolve. Aims: We have obtained high resolution spectra using the ESPaDOnS spectropolarimeter and FEROS spectrograph of the chemically peculiar, magnetic Bp star HD 133652. Using these data, we present a simple magnetic field model and abundance determinations of He, O, Mg, Si, Ti, Cr, Fe, Pr, and Nd. Methods: Abundance analysis was performed using zeeman.f, a spectral synthesis program that includes the effects of magnetic fields on line formation. The magnetic field structure is approximated as a simple, co-linear multipole expansion that reproduces the observed variations of the line-of-sight magnetic field with phase. The abundance distribution of each element was modelled using a uniform abundance in each of the two magnetic hemispheres. Results: Using the new magnetic field measurements, we were able to refine the rotation period of HD 133652 to P = 2.30405 ± 0.00002 d. The abundance analysis reveals that the elements modelled (except He, O and Mg) are overabundant compared to the Sun; however most elements studied do not show substantial differences in the large-scale mean abundances between the two magnetic hemispheres. The individual line profiles are very complex and clearly indicate the presence of significant small-scale abundance variations on the stellar surface. Conclusions: These data are adequate to perform a useful investigation of the magnetic field structure and abundance distribution over the stellar surface. HD 133652 is now one of a growing list of hotter Bp stars of known age for which this type of analysis has been performed

  16. Arg Kinase-binding Protein 2 (ArgBP2) Interaction with α-Actinin and Actin Stress Fibers Inhibits Cell Migration*

    PubMed Central

    Anekal, Praju Vikas; Yong, Jeffery; Manser, Ed

    2015-01-01

    Cell migration requires dynamic remodeling of the actomyosin network. We report here that an adapter protein, ArgBP2, is a component of α-actinin containing stress fibers and inhibits migration. ArgBP2 is undetectable in many commonly studied cancer-derived cell lines. COS-7 and HeLa cells express ArgBP2 (by Western analysis), but expression was detectable only in approximately half the cells by immunofluorescence. Short term clonal analysis demonstrated 0.2–0.3% of cells switch ArgBP2 expression (on or off) per cell division. ArgBP2 can have a fundamental impact on the actomyosin network: ArgBP2 positive COS-7 cells, for example, are clearly distinguishable by their denser actomyosin (stress fiber) network. ArgBP2γ binding to α-actinin appears to underlie its ability to localize to stress fibers and decrease cell migration. We map a small α-actinin binding region in ArgBP2 (residues 192–228) that is essential for these effects. Protein kinase A phosphorylation of ArgBP2γ at neighboring Ser-259 and consequent 14-3-3 binding blocks its interaction with α-actinin. ArgBP2 is known to be down-regulated in some aggressively metastatic cancers. Our work provides a biochemical explanation for the anti-migratory effect of ArgBP2. PMID:25429109

  17. Twist1-mediated 4E-BP1 regulation through mTOR in non-small cell lung cancer

    PubMed Central

    Cromie, Meghan; Liu, Hongbing; Tang, Song; Song, Yong; Gao, Weimin

    2015-01-01

    Twist1 overexpression corresponds with poor survival in non-small cell lung cancer (NSCLC), but the underlining mechanism is not clear. The objective of the present study was to investigate the tumorigenic role of Twist1 and its related molecular mechanisms in NSCLC. Twist1 was overexpressed in 34.7% of NSCLC patients. The survival rate was significantly lower in patients with high Twist1 expression than low expression (P < 0.05). Twist1 expression levels were higher in H1650 cells, but relatively lower in H1975 cells. H1650 with stable Twist1 knockdown, H1650shTw, demonstrated a significantly slower rate of wound closure; however, H1975 with stable Twist1 overexpression, H1975Over, had an increased motility velocity. A significant decrease in colony number and size was observed in H1650shTw, but a significant increase in colony number was found in H1975Over (P < 0.05). Tumor growth significantly decreased in mice implanted with H1650shTw compared to H1650 (P < 0.05). 4E-BP1 and p53 gene expressions were increased, but p-4E-BP1 and p-mTOR protein expressions were decreased in H1650shTw. However, 4E-BP1 gene expression was decreased, while p-4E-BP1 and p-mTOR protein expressions were increased in H1975Over. p-4E-BP1 was overexpressed in 24.0% of NSCLC patients. Survival rate was significantly lower in patients with high p-4E-BP1 expression than low p-4E-BP1 (P < 0.01). A significant correlation was found between Twist1 and p-4E-BP1 (P < 0.01). A total of 13 genes in RT-PCR array showed significant changes in H1650shTw. Altogether, Twist1 is correlated with p-4E-BP1 in predicting the prognostic outcome of NSCLC. Inhibition of Twist1 decreases p-4E-BP1 expression possibly through downregulating p-mTOR and increasing p53 expression in NSCLC. PMID:26360779

  18. Twist1-mediated 4E-BP1 regulation through mTOR in non-small cell lung cancer.

    PubMed

    Lv, Tangfeng; Wang, Qian; Cromie, Meghan; Liu, Hongbing; Tang, Song; Song, Yong; Gao, Weimin

    2015-10-20

    Twist1 overexpression corresponds with poor survival in non-small cell lung cancer (NSCLC), but the underlining mechanism is not clear. The objective of the present study was to investigate the tumorigenic role of Twist1 and its related molecular mechanisms in NSCLC. Twist1 was overexpressed in 34.7% of NSCLC patients. The survival rate was significantly lower in patients with high Twist1 expression than low expression (P < 0.05). Twist1 expression levels were higher in H1650 cells, but relatively lower in H1975 cells. H1650 with stable Twist1 knockdown, H1650shTw, demonstrated a significantly slower rate of wound closure; however, H1975 with stable Twist1 overexpression, H1975Over, had an increased motility velocity. A significant decrease in colony number and size was observed in H1650shTw, but a significant increase in colony number was found in H1975Over (P < 0.05). Tumor growth significantly decreased in mice implanted with H1650shTw compared to H1650 (P < 0.05). 4E-BP1 and p53 gene expressions were increased, but p-4E-BP1 and p-mTOR protein expressions were decreased in H1650shTw. However, 4E-BP1 gene expression was decreased, while p-4E-BP1 and p-mTOR protein expressions were increased in H1975Over. p-4E-BP1 was overexpressed in 24.0% of NSCLC patients. Survival rate was significantly lower in patients with high p-4E-BP1 expression than low p-4E-BP1 (P < 0.01). A significant correlation was found between Twist1 and p-4E-BP1 (P < 0.01). A total of 13 genes in RT-PCR array showed significant changes in H1650shTw. Altogether, Twist1 is correlated with p-4E-BP1 in predicting the prognostic outcome of NSCLC. Inhibition of Twist1 decreases p-4E-BP1 expression possibly through downregulating p-mTOR and increasing p53 expression in NSCLC. PMID:26360779

  19. Development of HT-BP nueral network system for the identification of well test interpretation model

    SciTech Connect

    Sung, W.; Hanyang, U.; Yoo, I.

    1995-12-31

    The neural network technique that is a field of artificial intelligence (AI) has proved to be a good model classifier in all areas of engineering and especially, it has gained a considerable acceptance in well test interpretation model (WTIM) identification of petroleum engineering. Conventionally, identification of the WTIM has been approached by graphical analysis method that requires an experienced expert. Recently, neural network technique equipped with back propagation (BP) learning algorithm was presented and it differs from the AI technique such as symbolic approach that must be accompanied with the data preparation procedures such as smoothing, segmenting, and symbolic transformation. In this paper, we developed BP neural network with Hough transform (HT) technique to overcome data selection problem and to use single neural network rather sequential nets. The Hough transform method was proved to be a powerful tool for the shape detection in image processing and computer vision technologies. Along these lines, a number of exercises were conducted with the actual well test data in two steps. First, the newly developed AI model, namely, ANNIS (Artificial intelligence Neural Network Identification System) was utilized to identify WTIM. Secondly, we obtained reservoir characteristics with the well test model equipped with modified Levenberg-Marquart method. The results show that ANNIS was proved to be quite reliable model for the data having noisy, missing, and extraneous points. They also demonstrate that reservoir parameters were successfully estimated.

  20. Discovery of the Pre-Main Sequence Progenitors of the Magnetic Ap/Bp Stars?

    NASA Astrophysics Data System (ADS)

    Drouin, Dominic; Wade, Gregg; Bagnulo, S.; Landstreet, J. D.; Mason, E.; Monin, D.; Silvester, J.; Alecian, E.; Catala, C.; Bohm, T.; Bouret, J.-C.; Donati, J.-F.

    2005-08-01

    The magnetic Ap/Bp stars represent about 5% of all intermediatemass main sequence stars, and are characterised by strong, globallyordered surface magnetic fields. The physical impact of the presence of these fields is clear: atmospheric structure, photospheric chemical abundances, mass loss, rotation, and ultimately stellar evolution are all modified, to various extents, due to the interaction of the magnetic field with the stellar plasma. Remarkably, the origin of these magnetic fields remains a total mystery. In order to trace the presence of these fields back to the premain sequence (PMS), we have undertaken an extensive search for magnetic fields in the Herbig Ae/Be (HAeBe) stars, the PMS progenitors of the main sequence intermediate-mass stars. Using both the FORS1 spectropolarimeter at the ESO-VLT and the brand-new ESPaDOnS spectropolarimeter at the CFHT, we have surveyed over 50 HAeBe stars for the presence of longitudinal magnetic fields. Here we review the details of our investigation, and announce the detection of magnetic fields and chemical peculiarities in the HAeBe stars HD 72106 and HD 101412. These detections may well represent the identification of the pre-main sequence progenitors of the magnetic Ap/Bp stars. At the same time, we fail to confirm claims by Hubrig et al. (2004) of the presence of magnetic fields in the Herbig Ae star HD 139614.

  1. The Holocene (5000-6000. yrs B.P.) paleosecular variation record from a Portuguese speleothem

    NASA Astrophysics Data System (ADS)

    Ponte, Jorge; Font, Eric; Veiga-Pires, Cristina; Marcel-Hillaire, Claude

    2015-04-01

    Recent studies pointed speleothems as excellent recorders of the Earth's magnetic field. Here we apply a high resolution paleomagnetic study in a well-dated (5000-6000. yrs B.P., U-Th methods) speleothem from Algarve, Portugal, in order to i) check for the reliability of the magnetic remanence recorder in speleothem, and ii) provide new paleosecular variation data for the studied Holocene interval. In addition, we applied a new technique (by using the MIRONE software) in order to calculate the sedimentation rate of the calcite growth. Our results show that the magnetic remanence recorded in our samples is primary (detrital remanent magnetization) and carried by maghemite/magnetite. Magnetic directions are stable with satisfactory statistical criteria (alpha95<(2.2°). Mean directions are oriented N°0 with a mean inclination of 46.4°. We compared the results with a geomagnetic model based on archaeomagnetic and lava flow paleomagnetic data (Sha.dif.14k) and that our data well fit the model Sha.dif.14k for the concerned time interval. These new results provide the first paleomagnetic data at 5000-6000 yrs. B.P., which are crucial for the improvement of the paleosecular variation models. Key-words: Speleothems, palaeomagnetism, Paleosecular Variation, Holocene Funded by FCT (PTDC/CTE-GIX/117298/2010)

  2. High-precision magnetic field measurements of Ap and Bp stars

    NASA Astrophysics Data System (ADS)

    Wade, G. A.; Donati, J.-F.; Landstreet, J. D.; Shorlin, S. L. S.

    2000-04-01

    In this paper we describe a new approach for measuring the mean longitudinal magnetic field and net linear polarization of Ap and Bp stars. As was demonstrated by Wade et al., least-squares deconvolution (LSD; Donati et al.) provides a powerful technique for detecting weak Stokes V, Q and U Zeeman signatures in stellar spectral lines. These signatures have the potential to apply strong new constraints to models of stellar magnetic field structure. Here we point out two important uses of LSD Stokes profiles. First, they can provide very precise determinations of the mean longitudinal magnetic field. In particular, this method allows one frequently to obtain 1σ error bars better than 50G, and smaller than 20G in some cases. This method is applicable to both broad- and sharp-lined stars, with both weak and strong magnetic fields, and effectively redefines the quality standard of longitudinal field determinations. Secondly, LSD profiles can in some cases provide a measure of the net linear polarization, a quantity analogous to the broad-band linear polarization recently used to derive detailed magnetic field models for a few stars (e.g. Leroy et al.). In this paper we report new high-precision measurements of the longitudinal fields of 14 magnetic Ap/Bp stars, as well as net linear polarization measurements for four of these stars, derived from LSD profiles.

  3. Spontaneous 8bp Deletion in Nbeal2 Recapitulates the Gray Platelet Syndrome in Mice

    PubMed Central

    Tomberg, Kärt; Khoriaty, Rami; Westrick, Randal J.; Fairfield, Heather E.; Reinholdt, Laura G.; Brodsky, Gary L.; Davizon-Castillo, Pavel; Ginsburg, David; Di Paola, Jorge

    2016-01-01

    During the analysis of a whole genome ENU mutagenesis screen for thrombosis modifiers, a spontaneous 8 base pair (bp) deletion causing a frameshift in exon 27 of the Nbeal2 gene was identified. Though initially considered as a plausible thrombosis modifier, this Nbeal2 mutation failed to suppress the synthetic lethal thrombosis on which the original ENU screen was based. Mutations in NBEAL2 cause Gray Platelet Syndrome (GPS), an autosomal recessive bleeding disorder characterized by macrothrombocytopenia and gray-appearing platelets due to lack of platelet alpha granules. Mice homozygous for the Nbeal2 8 bp deletion (Nbeal2gps/gps) exhibit a phenotype similar to human GPS, with significantly reduced platelet counts compared to littermate controls (p = 1.63 x 10−7). Nbeal2gps/gps mice also have markedly reduced numbers of platelet alpha granules and an increased level of emperipolesis, consistent with previously characterized mice carrying targeted Nbeal2 null alleles. These findings confirm previous reports, provide an additional mouse model for GPS, and highlight the potentially confounding effect of background spontaneous mutation events in well-characterized mouse strains. PMID:26950939

  4. A 57-bp deletion in the ovine KAP6-1 gene affects wool fibre diameter.

    PubMed

    Zhou, H; Gong, H; Li, S; Luo, Y; Hickford, J G H

    2015-08-01

    High glycine-tyrosine keratin-associated proteins (HGT-KAPs) are predominantly present in the orthocortex of wool fibres. They vary in abundance in different wools and have been implicated in regulating wool fibre properties, but little is known about the functional roles of these proteins in the fibre matrix. In this study, we used polymerase chain reaction--single-strand conformational polymorphism (PCR-SSCP) analysis to screen for variation in a gene encoding the ovine HGT-KAP6-1 protein. We identified three gene variants (A, B and C). Variants A and B were similar to each other, with only three nucleotide differences occurring downstream of the coding sequence. However, variant C had a 57-bp deletion that would notionally result in a loss of 19 amino acids in the protein. The presence of C was found to be associated with an increase in mean fibre diameter (MFD), fibre diameter standard deviation (FDSD), coefficient of variation of fibre diameter (CVFD) and prickle factor (percentage of fibres over 30 microns; PF). Sheep of genotype BC produced wool of greater MFD, FDSD and PF than sheep of genotypes AA, AB and BB. The CVFD was greater in the BC sheep than the AB sheep. The results suggest that variation in ovine KRTAP6-1 affects wool fibre diameter-associated traits and that the 57-bp deletion in this gene would lead to coarser wool with greater FDSD, CVFD and PF. PMID:25782086

  5. Atomic interactions of neonicotinoid agonists with AChBP: Molecular recognition of the distinctive electronegative pharmacophore

    SciTech Connect

    Talley, Todd T.; Harel, Michal; Hibbs, Ryan E.; Radi, Zoran; Tomizawa, Motohiro; Casida, John E.; Taylor, Palmer

    2008-07-28

    Acetylcholine-binding proteins (AChBPs) from mollusks are suitable structural and functional surrogates of the nicotinic acetylcholine receptors when combined with transmembrane spans of the nicotinic receptor. These proteins assemble as a pentamer with identical ACh binding sites at the subunit interfaces and show ligand specificities resembling those of the nicotinic receptor for agonists and antagonists. A subset of ligands, termed the neonicotinoids, exhibit specificity for insect nicotinic receptors and selective toxicity as insecticides. AChBPs are of neither mammalian nor insect origin and exhibit a distinctive pattern of selectivity for the neonicotinoid ligands. We define here the binding orientation and determinants of differential molecular recognition for the neonicotinoids and classical nicotinoids by estimates of kinetic and equilibrium binding parameters and crystallographic analysis. Neonicotinoid complex formation is rapid and accompanied by quenching of the AChBP tryptophan fluorescence. Comparisons of the neonicotinoids imidacloprid and thiacloprid in the binding site from Aplysia californica AChBP at 2.48 and 1.94 {angstrom} in resolution reveal a single conformation of the bound ligands with four of the five sites occupied in the pentameric crystal structure. The neonicotinoid electronegative pharmacophore is nestled in an inverted direction compared with the nicotinoid cationic functionality at the subunit interfacial binding pocket. Characteristic of several agonists, loop C largely envelops the ligand, positioning aromatic side chains to interact optimally with conjugated and hydrophobic regions of the neonicotinoid. This template defines the association of interacting amino acids and their energetic contributions to the distinctive interactions of neonicotinoids.

  6. X-rays from magnetic intermediate mass Ap/Bp stars

    NASA Astrophysics Data System (ADS)

    Robrade, Jan

    2016-09-01

    The X-ray emission of magnetic intermediate mass Ap/Bp stars is reviewed and put into context of intrinsic as well as extrinsic hypotheses for its origin. New X-ray observations of Ap/Bp stars are presented and combined with an updated analysis of the available datasets, providing the largest sample of its type that is currently available. In the studied stars the X-ray detections are found predominantly among the more massive, hotter and more luminous targets. Their X-ray properties are quite diverse and beside strong soft X-ray emission significant magnetic activity is frequently present. While a connection between more powerful winds and brighter X-ray emission is expected in intrinsic models, the scatter in X-ray luminosity at given bolometric luminosity is so far unexplained and several observational features like X-ray light curves and flaring, luminosity distributions and spectral properties are often similar to those of low-mass stars. It remains to be seen if these features can be fully reproduced by magnetospheres of intermediate mass stars. The article discusses implications for magnetically confined wind-shock models (MCWS) and stellar magnetospheres under the assumption that the intrinsic model is applicable, but also examines the role of possible companions. Further, related magnetospheric phenomena are presented and an outlook on future perspectives is given.

  7. Clearance Rate and BP-ANN Model in Paraquat Poisoned Patients Treated with Hemoperfusion

    PubMed Central

    Hu, Lufeng; Hong, Guangliang; Ma, Jianshe; Wang, Xianqin; Lin, Guanyang; Zhang, Xiuhua; Lu, Zhongqiu

    2015-01-01

    In order to investigate the effect of hemoperfusion (HP) on the clearance rate of paraquat (PQ) and develop a clearance model, 41 PQ-poisoned patients who acquired acute PQ intoxication received HP treatment. PQ concentrations were determined by high performance liquid chromatography (HPLC). According to initial PQ concentration, study subjects were divided into two groups: Low-PQ group (0.05–1.0 μg/mL) and High-PQ group (1.0–10 μg/mL). After initial HP treatment, PQ concentrations decreased in both groups. However, in the High-PQ group, PQ levels remained in excess of 0.05 μg/mL and increased when the second HP treatment was initiated. Based on the PQ concentrations before and after HP treatment, the mean clearance rate of PQ calculated was 73 ± 15%. We also established a backpropagation artificial neural network (BP-ANN) model, which set PQ concentrations before HP treatment as input data and after HP treatment as output data. When it is used to predict PQ concentration after HP treatment, high prediction accuracy (R = 0.9977) can be obtained in this model. In conclusion, HP is an effective way to clear PQ from the blood, and the PQ concentration after HP treatment can be predicted by BP-ANN model. PMID:25695058

  8. SH3BP2 Gain-Of-Function Mutation Exacerbates Inflammation and Bone Loss in a Murine Collagen-Induced Arthritis Model

    PubMed Central

    Mukai, Tomoyuki; Gallant, Richard; Ishida, Shu; Yoshitaka, Teruhito; Kittaka, Mizuho; Nishida, Keiichiro; Fox, David A.; Morita, Yoshitaka; Ueki, Yasuyoshi

    2014-01-01

    Objective SH3BP2 is a signaling adapter protein which regulates immune and skeletal systems. Gain-of-function mutations in SH3BP2 cause cherubism, characterized by jawbone destruction. This study was aimed to examine the role of SH3BP2 in inflammatory bone loss using a collagen-induced arthritis (CIA) model. Methods CIA was induced in wild-type (Sh3bp2+/+) and heterozygous P416R SH3BP2 cherubism mutant knock-in (Sh3bp2KI/+) mice, an SH3BP2 gain-of-function model. Severity of the arthritis was determined by assessing the paw swelling and histological analyses of the joints. Micro-CT analysis was used to determine the levels of bone loss. Inflammation and osteoclastogenesis in the joints were evaluated by quantitating the gene expression of inflammatory cytokines and osteoclast markers. Furthermore, involvement of the T- and B-cell responses was determined by draining lymph node cell culture and measurement of the serum anti-mouse type II collagen antibody levels, respectively. Finally, roles of the SH3BP2 mutation in macrophage activation and osteoclastogenesis were determined by evaluating the TNF-α production levels and osteoclast formation in bone marrow-derived M-CSF-dependent macrophage (BMM) cultures. Results Sh3bp2KI/+ mice exhibited more severe inflammation and bone loss, accompanying an increased number of osteoclasts. The mRNA levels for TNF-α and osteoclast marker genes were higher in the joints of Sh3bp2KI/+ mice. Lymph node cell culture showed that lymphocyte proliferation and IFN-γ and IL-17 production were comparable between Sh3bp2+/+ and Sh3bp2KI/+ cells. Serum anti-type II collagen antibody levels were comparable between Sh3bp2+/+ and Sh3bp2KI/+ mice. In vitro experiments showed that TNF-α production in Sh3bp2KI/+ BMMs is elevated compared with Sh3bp2+/+ BMMs and that RANKL-induced osteoclastogenesis is enhanced in Sh3bp2KI/+ BMMs associated with increased NFATc1 nuclear localization. Conclusion Gain-of-function of SH3BP2 augments inflammation

  9. Hsp70 Cochaperones HspBP1 and BAG-1M Differentially Regulate Steroid Hormone Receptor Function

    PubMed Central

    Knapp, Regina T.; Wong, Michael J. H.; Kollmannsberger, Lorenz K.; Gassen, Nils C.; Kretzschmar, Anja; Zschocke, Jürgen; Hafner, Kathrin; Young, Jason C.; Rein, Theo

    2014-01-01

    Hsp70 binding protein 1 (HspBP1) and Bcl2-associated athanogene 1 (BAG-1), the functional orthologous nucleotide exchange factors of the heat shock protein 70 kilodalton (Hsc70/Hsp70) chaperones, catalyze the release of ADP from Hsp70 while inducing different conformational changes of the ATPase domain of Hsp70. An appropriate exchange rate of ADP/ATP is crucial for chaperone-dependent protein folding processes. Among Hsp70 client proteins are steroid receptors such as the glucocorticoid receptor (GR), the mineralocorticoid receptor (MR), and the androgen receptor (AR). BAG-1 diversely affects steroid receptor activity, while to date the influence of HspBP1 on steroid receptor function is mostly unknown. Here, we compared the influence of HspBP1 and BAG-1M on Hsp70-mediated steroid receptor folding complexes and steroid receptor activity. Coimmunoprecipitation studies indicated preferential binding of Hsp40 and the steroid receptors to BAG-1M as compared to HspBP1. Furthermore, Hsp70 binding to the ligand-binding domain of GR was reduced in the presence of HspBP1 but not in the presence of BAG-1M as shown by pull-down assays. Reporter gene experiments revealed an inhibitory effect on GR, MR, and AR at a wide range of HspBP1 protein levels and at hormone concentrations at or approaching saturation. BAG-1M exhibited a transition from stimulatory effects at low BAG-1M levels to inhibitory effects at higher BAG-1M levels. Overall, BAG-1M and HspBP1 had differential impacts on the dynamic composition of steroid receptor folding complexes and on receptor function with important implications for steroid receptor physiology. PMID:24454860

  10. Association of an HLA-G 14-bp Insertion/Deletion polymorphism with high HBV replication in chronic hepatitis.

    PubMed

    Laaribi, A B; Zidi, I; Hannachi, N; Ben Yahia, H; Chaouch, H; Bortolotti, D; Zidi, N; Letaief, A; Yacoub, S; Boudabous, A; Rizzo, R; Boukadida, J

    2015-10-01

    Identification of an HLA-G 14-bp Insertion/Deletion (Ins/Del) polymorphism at the 3' untranslated region of HLA-G revealed its importance in HLA-G mRNA stability and HLA-G protein level variation. We evaluated the association between the HLA-G 14-bp Ins/Del polymorphism in patients with chronic Hepatitis B virus (HBV) infection in a case-control study. Genomic DNA was extracted from 263 patients with chronic HBV hepatitis and 246 control subjects and was examined for the HLA-G 14-bp Ins/Del polymorphism by PCR. The polymorphic variants were genotyped in chronic HBV seropositive cases stratified according to HBV DNA levels, fibrosis stages and in a control population. There was no statistical significant association between the 14-bp Ins/Del polymorphism and increased susceptibility to HBV infection neither for alleles (P = 0.09) nor for genotypes (P = 0.18). The stratification of HBV patients based on HBV DNA levels revealed an association between the 14-bp Ins/Del polymorphism and an enhanced HBV activity with high HBV DNA levels. In particular, the Ins allele was significantly associated with high HBV DNA levels (P = 0.0024, OR = 1.71, 95% CI 1.2-2.4). The genotype Ins/Ins was associated with a 2.5-fold (95% CI, 1.29-4.88) increased risk of susceptibility to high HBV replication compared with the Del/Del and Ins/Del genotypes. This susceptibility is linked to the presence of two Ins alleles. No association was observed between the 14-bp Ins/Del polymorphism and fibrosis stage of HBV infection. We observed an association between the 14-bp Ins/Del polymorphism and high HBV replication characterized by high HBV DNA levels in chronic HBV patients. These results suggest a potential prognostic value for disease outcome evaluation. PMID:25619305

  11. Overlapping functions between XLF repair protein and 53BP1 DNA damage response factor in end joining and lymphocyte development.

    PubMed

    Liu, Xiangyu; Jiang, Wenxia; Dubois, Richard L; Yamamoto, Kenta; Wolner, Zachary; Zha, Shan

    2012-03-01

    Nonhomologous end joining (NHEJ), a major pathway of DNA double-strand break (DSB) repair, is required during lymphocyte development to resolve the programmed DSBs generated during Variable, Diverse, and Joining [V(D)J] recombination. XRCC4-like factor (XLF) (also called Cernunnos or NHEJ1) is a unique component of the NHEJ pathway. Although germ-line mutations of other NHEJ factors abrogate lymphocyte development and lead to severe combined immunodeficiency (SCID), XLF mutations cause a progressive lymphocytopenia that is generally less severe than SCID. Accordingly, XLF-deficient murine lymphocytes show no measurable defects in V(D)J recombination. We reported earlier that ATM kinase and its substrate histone H2AX are both essential for V(D)J recombination in XLF-deficient lymphocytes, despite moderate role in V(D)J recombination in WT cells. p53-binding protein 1 (53BP1) is another substrate of ATM. 53BP1 deficiency led to small reduction of peripheral lymphocyte number by compromising both synapse and end-joining at modest level during V(D)J recombination. Here, we report that 53BP1/XLF double deficiency blocks lymphocyte development at early progenitor stages, owing to severe defects in end joining during chromosomal V(D)J recombination. The unrepaired DNA ends are rapidly degraded in 53BP1(-/-)XLF(-/-) cells, as reported for H2AX(-/-)XLF(-/-) cells, revealing an end protection role for 53BP1 reminiscent of H2AX. In contrast to the early embryonic lethality of H2AX(-/-)XLF(-/-) mice, 53BP1(-/-)XLF(-/-) mice are born alive and develop thymic lymphomas with translocations involving the T-cell receptor loci. Together, our findings identify a unique function for 53BP1 in end-joining and tumor suppression. PMID:22355127

  12. FhCaBP3: a Fasciola hepatica calcium binding protein with EF-hand and dynein light chain domains.

    PubMed

    Banford, Samantha; Drysdale, Orla; Hoey, Elizabeth M; Trudgett, Alan; Timson, David J

    2013-04-01

    A DNA sequence encoding a protein with predicted EF-hand and dynein light chain binding domains was identified in a Fasciola hepatica EST library. Sequence analysis of the encoded protein revealed that the most similar known protein was the Fasciola gigantica protein FgCaBP3 and so this newly identified protein was named FhCaBP3. Molecular modelling of FhCaBP3 predicted a highly flexible N-terminal region, followed by a domain containing two EF-hand motifs the second of which is likely to be a functioning divalent ion binding site. The C-terminal domain of the protein contains a dynein light chain like region. Interestingly, molecular modelling predicts that calcium ion binding to the N-terminal domain destabilises the β-sheet structure of the C-terminal domain. FhCaBP3 can be expressed in, and purified from, Escherichia coli. The recombinant protein dimerises and the absence of calcium ions appeared to promote dimerisation. Native gel shift assays demonstrated that the protein bound to calcium and manganese ions, but not to magnesium, barium, zinc, strontium, nickel, copper or cadmium ions. FhCaBP3 interacted with the calmodulin antagonists trifluoperazine, N-(6-aminohexyl)-5-chloro-1-naphthalenesulfonamide and chlorpromazine as well as the myosin regulatory light chain-binding drug praziquantel. Despite sequence and structural similarities to other members of the same protein family from F. hepatica, FhCaBP3 has different biochemical properties to the other well characterised family members, FH22 and FhCaBP4. This suggests that each member of this trematode calcium-binding family has discrete functional roles within the organism. PMID:23142130

  13. T4-like phage Bp7, a