Sample records for a-z index site

  1. DOE Research and Development Accomplishments Site Index (A-Z)

    Science.gov Websites

    dropdown arrow Site Map A-Z Index Menu Synopsis A - Z Index A B C D E F G H I J K L M N O P Q R S T U V W X Buckminsterfullerene Curl Smalley Buckyball Curl Smalley TOP A B C D E F G H I J K L M N O P Q R S T U V W X Y Z C transcription Dresselhaus, Mildred (Millie) Drosophila dynamics TOP A B C D E F G H I J K L M N O P Q R S T U V

  2. Femtosecond Z-scan measurements of the nonlinear refractive index of fused silica

    NASA Astrophysics Data System (ADS)

    Zhang, Lin; Shi, Zhendong; Ma, Hua; Ren, Huan; Yuan, Quan; Ma, Yurong; Feng, Xiaoxuan; Chen, Bo; Yang, Yi

    2018-01-01

    Z-scan technology is a popular experimental technique for determining the nonlinear refractive index of the material. However, it encounters a great difficulty in measuring the weak nonlinear material like fused silica which is about two orders of magnitude below the nonlinear refractive index of most of the materials studied with the nanosecond and picosecond Z-scan methods. In this case, the change of refractive index introduced by accumulation of thermal effects cannot be neglected. In order to have a reliable measurement of the nonlinear refractive index, a metrology bench based on the femtosecond Z-scan technology is developed. The intensity modulation component and the differential measurement system are applied to guarantee the accuracy of the measuring system. Based on the femtosecond Z-scan theory, the femtosecond laser Z-scan technique is performed on fused silica, and the nonlinear refractive index of Fused silica is determined to be 9.2039×10-14esu for 800nm, 37fs pulse duration at I0=50GW/cm2 with a good repeatability of 6.7%.

  3. Site index comparisons among hardwoods

    Treesearch

    Richard M. Godman

    1992-01-01

    Site index is one of the more easily measured indicators of the productive capacity of an area for a given species. In mixed stands, the site index of one species can be used to predict the site index of another. Site index also illustrates growth differences among species.

  4. Off-Site Indexing: A Cottage Industry.

    ERIC Educational Resources Information Center

    Fay, Catherine H.

    1984-01-01

    Briefly describes use of off-site staffing--indexers, abstractors, editors--in the production of two major databases: Management Contents and The Computer Data Base. Discussion covers the production sequence; database administrator; off-site indexer; savings (office space, furniture and equipment costs, salaries, and overhead); and problems…

  5. Existing data on the 216-Z liquid waste sites

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Owens, K.W.

    1981-05-01

    During 36 years of operation at the Hanford Site, the ground has been used for disposal of liquid and solid transuranic and/or low-level wastes. Liquid waste was disposed in surface and subsurface cribs, trenches, French drains, reverse wells, ditches and ponds. Disposal structures associated with Z Plant received liquid waste from plutonium finishing and reclamation, waste treatment and laboratory operations. The nineteen 216-Z sites have received 83% of the plutonium discharged to 325 liquid waste facilities at the Hanford Site. The purpose of this document is to support the Hanford Defense Waste Environmental Impact Statement by drawing the existing datamore » together for the 216-Z liquid waste disposal sites. This document provides an interim reference while a sitewide Waste Information Data System (WIDS) is developed and put on line. Eventually these and additional site data for all Hanford waste disposal sites will be available on WIDS. Compilation of existing data is the first step in evaluating the need and developing the technology for long-term management of these waste sites. The scope of this document is confined to data describing the status of the 216-Z waste sites as of December 31, 1979. Information and sketches are taken from existing documents and drawings.« less

  6. Pesticide Use Site Index

    EPA Pesticide Factsheets

    The Pesticide Use Site Index will help a company (or other applicant) identify which data requirements are needed to register a pesticide product. It provides information on pesticide use sites and pesticide major use patterns.

  7. Probing for Binding Regions of the FtsZ Protein Surface through Site-Directed Insertions: Discovery of Fully Functional FtsZ-Fluorescent Proteins

    PubMed Central

    Moore, Desmond A.; Whatley, Zakiya N.; Joshi, Chandra P.; Osawa, Masaki

    2016-01-01

    ABSTRACT FtsZ, a bacterial tubulin homologue, is a cytoskeletal protein that assembles into protofilaments that are one subunit thick. These protofilaments assemble further to form aZ ring” at the center of prokaryotic cells. The Z ring generates a constriction force on the inner membrane and also serves as a scaffold to recruit cell wall remodeling proteins for complete cell division in vivo. One model of the Z ring proposes that protofilaments associate via lateral bonds to form ribbons; however, lateral bonds are still only hypothetical. To explore potential lateral bonding sites, we probed the surface of Escherichia coli FtsZ by inserting either small peptides or whole fluorescent proteins (FPs). Among the four lateral surfaces on FtsZ protofilaments, we obtained inserts on the front and back surfaces that were functional for cell division. We concluded that these faces are not sites of essential interactions. Inserts at two sites, G124 and R174, located on the left and right surfaces, completely blocked function, and these sites were identified as possible sites for essential lateral interactions. However, the insert at R174 did not interfere with association of protofilaments into sheets and bundles in vitro. Another goal was to find a location within FtsZ that supported insertion of FP reporter proteins while allowing the FtsZ-FPs to function as the sole source of FtsZ. We discovered one internal site, G55-Q56, where several different FPs could be inserted without impairing function. These FtsZ-FPs may provide advances for imaging Z-ring structure by superresolution techniques. IMPORTANCE One model for the Z-ring structure proposes that protofilaments are assembled into ribbons by lateral bonds between FtsZ subunits. Our study excluded the involvement of the front and back faces of the protofilament in essential interactions in vivo but pointed to two potential lateral bond sites, on the right and left sides. We also identified an FtsZ loop where

  8. A comparison of site index curves for northern hardwood species.

    Treesearch

    Willard H. Carmean

    1979-01-01

    Gives an inventory and compares site index curves for 13 northern hardwood species. Differences illustrate the need for more precise site index curves that are applicable to local soil and site conditions.

  9. Measuring site index in the central hardwood region

    Treesearch

    Robert A. McQuilkin

    1989-01-01

    Site index is the average height of dominant and codominant trees growing in well-stocked, even-aged stands at a given age called ?index age.? Fifty years is the most commonly used index age in upland hardwoods. Sometimes 25 or 30 years are used for short-rotation bottomland hardwoods. Site index is widely used to indicate site quality because it correlates well with...

  10. Computation of Southern Pine Site Index Using a TI-59 Calculator

    Treesearch

    Robert M. Farrar

    1983-01-01

    A program is described that permits computation of site index in the field using a Texas Instruments model TI-59 programmable, hand-held, battery-powered calculator. Based on a series of equations developed by R.M. Farrar, Jr., for the site index curves in USDA Miscellaneous Publication 50, the program can accommodate any index base age, tree age, and height within...

  11. A Generational Change in Site Index for Naturally Established Longleaf Pine on a South Alabama Coastal Plain Site

    Treesearch

    William D. Boyer

    2001-01-01

    Research on longleaf pine (Pinus palustris Mill.) has been carried out for over 50 yr on a coastal plain site in south Alabama. Studies havie included the original second-growth stands and also naturally established third-growth stands. Site index data revealed that estimated site index values for third growth generally exceeded those for second...

  12. A generational change in site index for naturally established longleaf pine on a south Alabama Coastal Plain site

    Treesearch

    William D. Boyer

    2001-01-01

    Research on longleaf pine (Pinus palustris Mill.) has been carried out for over 50 yr on a Coastal Plain site in south Alabama. Studies have included the original second-growth stands and also naturally established third-growth stands. Site index data revealed that estimated site index values for third growth generally exceeded those for second...

  13. Development of a site fidelity index based on population capture-recapture data.

    PubMed

    Tschopp, Ayelen; Ferrari, Mariano A; Crespo, Enrique A; Coscarella, Mariano A

    2018-01-01

    Site fidelity is considered as an animal's tendency to return to a previously occupied place; this is a component of animal behaviour that allows us to understand movement patterns and aspects related to the animal's life history. Although there are many site fidelity metrics, the lack of standardisation presents a considerable challenge in terms of comparability among studies. This investigation focused on the theoretical development of a standardised composite site fidelity index and its statistical distribution in order to obtain reliable population-level site fidelity comparisons. The arithmetic and harmonic means were used as mathematical structures in order to create different indexes by combining the most commonly used indicators for site fidelity such as Occurrence, Permanence and Periodicity. The index performance was then evaluated in simulated populations and one real population of Commerson's dolphins ( Cephalorhynchus commersonii (Lacépède 1804)). In the first case, the indexes were evaluated based on how they were affected by different probability values such as the occurrence of the individual within the study area (φ) and capture probability ( p ). As a precision measure for the comparison of the indexes, the Wald confidence interval (CI) and the mean square error were applied. Given that there was no previous data concerning the distribution parameters of this population, bootstrap CIs were applied for the study case. Eight alternative indexes were developed. The indexes with an arithmetic mean structure, in general, had a consistently inferior performance than those with a harmonic mean structure. The index IH4, in particular, achieved the best results in all of the scenarios and in the study case. Additionally, this index presented a normal distribution. As such, it was proposed as a standardised measure for site fidelity (Standardised Site Fidelity Index-SSFI). The SSFI is the first standardised metric that quantifies site fidelity at a

  14. Pseudomonas aeruginosa AmrZ Binds to Four Sites in the algD Promoter, Inducing DNA-AmrZ Complex Formation and Transcriptional Activation.

    PubMed

    Xu, Binjie; Soukup, Randal J; Jones, Christopher J; Fishel, Richard; Wozniak, Daniel J

    2016-10-01

    During late stages of cystic fibrosis pulmonary infections, Pseudomonas aeruginosa often overproduces the exopolysaccharide alginate, protecting the bacterial community from host immunity and antimicrobials. The transcription of the alginate biosynthesis operon is under tight control by a number of factors, including AmrZ, the focus of this study. Interestingly, multiple transcription factors interact with the far-upstream region of this promoter (PalgD), in which one AmrZ binding site has been identified previously. The mechanisms of AmrZ binding and subsequent activation remain unclear and require more-detailed investigation. In this study, in-depth examinations elucidated four AmrZ binding sites, and their disruption eliminated AmrZ binding and promoter activation. Furthermore, our in vitro fluorescence resonance energy transfer experiments suggest that AmrZ holds together multiple binding sites in PalgD and thereafter induces the formation of higher-order DNA-AmrZ complexes. To determine the importance of interactions between those AmrZ oligomers in the cell, a DNA phasing experiment was performed. PalgD transcription was significantly impaired when the relative phase between AmrZ binding sites was reversed (5 bp), while a full-DNA-turn insertion (10 bp) restored promoter activity. Taken together, the investigations presented here provide a deeper mechanistic understanding of AmrZ-mediated binding to PalgD IMPORTANCE: Overproduction of the exopolysaccharide alginate provides protection to Pseudomonas aeruginosa against antimicrobial treatments and is associated with chronic P. aeruginosa infections in the lungs of cystic fibrosis patients. In this study, we combined a variety of microbiological, genetic, biochemical, and biophysical approaches to investigate the activation of the alginate biosynthesis operon promoter by a key transcription factor named AmrZ. This study has provided important new information on the mechanism of activation of this extremely

  15. A Didactic Presentation of Snijders's "l[subscript z]*" Index of Person Fit with Emphasis on Response Model Selection and Ability Estimation

    ERIC Educational Resources Information Center

    Magis, David; Raiche, Gilles; Beland, Sebastien

    2012-01-01

    This paper focuses on two likelihood-based indices of person fit, the index "l[subscript z]" and the Snijders's modified index "l[subscript z]*". The first one is commonly used in practical assessment of person fit, although its asymptotic standard normal distribution is not valid when true abilities are replaced by sample…

  16. Determining site index accurately in even-aged stands

    Treesearch

    Gayne G. Erdmann; Ralph M., Jr. Peterson

    1992-01-01

    Good site index estimates are necessary for intensive forest management. To get tree age used in determining site index, increment cores are commonly used. The diffuse-porous rings of northern hardwoods, though, are difficult to count in cores, so many site index estimates are imprecise. Also, measuring the height of standing trees is more difficult and less accurate...

  17. Development of a site fidelity index based on population capture-recapture data

    PubMed Central

    Ferrari, Mariano A.; Crespo, Enrique A.; Coscarella, Mariano A.

    2018-01-01

    Background Site fidelity is considered as an animal’s tendency to return to a previously occupied place; this is a component of animal behaviour that allows us to understand movement patterns and aspects related to the animal’s life history. Although there are many site fidelity metrics, the lack of standardisation presents a considerable challenge in terms of comparability among studies. Methods This investigation focused on the theoretical development of a standardised composite site fidelity index and its statistical distribution in order to obtain reliable population-level site fidelity comparisons. The arithmetic and harmonic means were used as mathematical structures in order to create different indexes by combining the most commonly used indicators for site fidelity such as Occurrence, Permanence and Periodicity. The index performance was then evaluated in simulated populations and one real population of Commerson’s dolphins (Cephalorhynchus commersonii (Lacépède 1804)). In the first case, the indexes were evaluated based on how they were affected by different probability values such as the occurrence of the individual within the study area (φ) and capture probability (p). As a precision measure for the comparison of the indexes, the Wald confidence interval (CI) and the mean square error were applied. Given that there was no previous data concerning the distribution parameters of this population, bootstrap CIs were applied for the study case. Results Eight alternative indexes were developed. The indexes with an arithmetic mean structure, in general, had a consistently inferior performance than those with a harmonic mean structure. The index IH4, in particular, achieved the best results in all of the scenarios and in the study case. Additionally, this index presented a normal distribution. As such, it was proposed as a standardised measure for site fidelity (Standardised Site Fidelity Index—SSFI). Discussion The SSFI is the first standardised

  18. A multicenter, retrospective chart review study comparing index therapy change rates in open-angle glaucoma or ocular hypertension patients newly treated with latanoprost or travoprost-Z monotherapy.

    PubMed

    Fain, Joel M; Kotak, Sameer; Mardekian, Jack; Bacharach, Jason; Edward, Deepak P; Rauchman, Steven; Brevetti, Teresa; Fox, Janet L; Lovelace, Cherie

    2011-06-13

    Because latanoprost and the original formulation of travoprost that included benzalkonium chloride (BAK) have been shown to be similar with regard to tolerability, we compared initial topical intraocular pressure (IOP)-lowering medication change rates in patients newly treated with latanoprost or travoprost-Z monotherapy. At 14 clinical practice sites, medical records were abstracted for patients with a diagnosis of open-angle glaucoma or ocular hypertension and who were ≥40 years of age, had a baseline and at least one follow-up visit, and had no prior history of ocular prostaglandin use. Data regarding demographics, ocular/systemic medical histories, clinical variables, therapy initiations and reasons for changes, adverse events, and resource utilization were recorded from randomly chosen eligible charts. Primary outcomes were rates of and reasons for changing from the initial therapy within six months and across the full study period (1000 days). Data from 900 medical charts (latanoprost, 632; travoprost-Z, 268) were included. For both cohorts, average follow-up was >1 year. Cohorts were similar with regard to age (median ~67 years), gender distribution (>50% female), and diagnosis (~80% with open-angle glaucoma). Within six months, rates of index therapy change for latanoprost versus travoprost-Z were 21.2% (134/632) and 28.7% (77/268), respectively (p = 0.0148); across the full study period, rates were 34.5% (218/632) and 45.2% (121/268), respectively (p = 0.0026). Among those who changed their index therapy, insufficient IOP control was the most commonly reported reason followed by adverse events; hyperemia was the most commonly reported adverse event at index therapy change. In this "real world" study of changes in therapy in patients prescribed initial monotherapy with latanoprost with BAK or travoprost-Z with SofZia, medication changes were common in both treatment groups but statistically significantly more frequent with travoprost-Z.

  19. Antimicrobial Pesticide Use Site Index

    EPA Pesticide Factsheets

    This Use Site Index provides guidance to assist applicants for antimicrobial pesticide registration by helping them identify the data requirements necessary to register a pesticide or support their product registrations.

  20. l[subscript z] Person-Fit Index to Identify Misfit Students with Achievement Test Data

    ERIC Educational Resources Information Center

    Seo, Dong Gi; Weiss, David J.

    2013-01-01

    The usefulness of the l[subscript z] person-fit index was investigated with achievement test data from 20 exams given to more than 3,200 college students. Results for three methods of estimating ? showed that the distributions of l[subscript z] were not consistent with its theoretical distribution, resulting in general overfit to the item response…

  1. Site-index comparisons for tree species in northern Minnesota.

    Treesearch

    Willard H. Carmean; Alexander Vasilevsky

    1971-01-01

    Presents site-index comparisons for the following forest species in northern Minnesota: quaking aspen, paper birch, basswood, red oak, black ash, jack pine, red pine, white pine, white spruce, black spruce, balsam fir, white-cedar, and tamarack. Shows site-index relationships among these species by using site-index ratios and species-comparison graphs.

  2. Development of a well-behaved site index equation: jack pine in north central Ontario

    Treesearch

    J. C. G. Goelz; T. E. Burke

    1992-01-01

    A base-age invariant site index equation for jack pine based on the Chapman-Richards function was produced that satisfied nine criteria of preferred behavior for site index equations. A difference form of the Chapman-Richards equation produced the best behavior; height equaled site index at base age, and the shape of the curves reflected the data. The data structure...

  3. Impact of the Z potential technique on reducing the sperm DNA fragmentation index, fertilization rate and embryo development.

    PubMed

    Duarte, Carlos; Núñez, Víctor; Wong, Yat; Vivar, Carlos; Benites, Elder; Rodriguez, Urso; Vergara, Carlos; Ponce, Jorge

    2017-12-01

    In assisted reproduction procedures, we need to develop and enhance new protocols to optimize sperm selection. The aim of this study is to evaluate the ability of the Z potential technique to select sperm with intact DNA in non-normospermic patients and evaluate the impact of this selection on embryonic development. We analyzed a total of 174 human seminal samples with at least one altered parameter. We measured basal, post density gradients, and post density gradients + Z potential DNA fragmentation index. To evaluate the impact of this technique on embryo development, 54 cases were selected. The embryo development parameters evaluated were fertilization rate, cleavage rate, top quality embryos at the third day and blastocysts rate. We found significant differences in the study groups when we compared the sperm fragmentation index by adding the Z potential technique to density gradient selection vs. density gradients alone. Furthermore, there was no significant difference in the embryo development parameters between the low sperm fragmentation index group vs. the moderate and high sperm fragmentation index groups, when selecting sperms with this new technique. The Z potential technique is a very useful tool for sperm selection; it significantly reduces the DNA fragmentation index and improves the parameters of embryo development. This technique could be considered routine for its simplicity and low cost.

  4. Site index determination techniques for southern bottomland hardwoods

    Treesearch

    Brian Roy Lockhart

    2013-01-01

    Site index is a species-specific indirect measure of forest productivity expressed as the average height of dominant and codominant trees in a stand of a specified base age. It is widely used by forest managers to make informed decisions regarding forest management practices. Unfortunately, forest managers have difficulty in determining site index for southern US...

  5. Site index curves for Douglas-fir in New Mexico

    Treesearch

    Carleton B. Edminster; Lewis H. Jump

    1976-01-01

    Presents a figure, table, and FORTRAN subroutine for estimating site indexes for Douglas-fir stands in New Mexico. Site index is expressed as the average height of dominant trees at a breast-height age of 100 years.

  6. Black cherry site index curves for the Allegheny Plateau

    Treesearch

    L.R. Auchmoody; C.O. Rexrode; C.O. Rexrode

    1984-01-01

    Black cherry site index curves were developed for the Allegheny Plateau in northwestern Pennsylvania. They show for this region that height rises less sharply prior to the index age and is maintained for a longer period thereafter than described by existing curves. An equation to predict site index from height and age is furnished to allow the use of these curves in...

  7. [A site index model for Larix principis-rupprechtii plantation in Saihanba, north China].

    PubMed

    Wang, Dong-zhi; Zhang, Dong-yan; Jiang, Feng-ling; Bai, Ye; Zhang, Zhi-dong; Huang, Xuan-rui

    2015-11-01

    It is often difficult to estimate site indices for different types of plantation by using an ordinary site index model. The objective of this paper was to establish a site index model for plantations in varied site conditions, and assess the site qualities. In this study, a nonlinear mixed site index model was constructed based on data from the second class forest resources inventory and 173 temporary sample plots. The results showed that the main limiting factors for height growth of Larix principis-rupprechtii were elevation, slope, soil thickness and soil type. A linear regression model was constructed for the main constraining site factors and dominant tree height, with the coefficient of determination being 0.912, and the baseline age of Larix principis-rupprechtii determined as 20 years. The nonlinear mixed site index model parameters for the main site types were estimated (R2 > 0.85, the error between the predicted value and the actual value was in the range of -0.43 to 0.45, with an average root mean squared error (RMSE) in the range of 0.907 to 1.148). The estimation error between the predicted value and the actual value of dominant tree height for the main site types was in the confidence interval of [-0.95, 0.95]. The site quality of the high altitude-shady-sandy loam-medium soil layer was the highest and that of low altitude-sunny-sandy loam-medium soil layer was the lowest, while the other two sites were moderate.

  8. A-Z Link

    Science.gov Websites

    Index (this page) 2. Use search.lbl.gov powered by Google. 3. Use DS The Directory of both People and Berkeley Lab Lawrence Berkeley National Laboratory A-Z Index Directory Submit Web People Navigation Berkeley Lab Search Submit Web People Close About the Lab Leadership/Organization Calendar News Center

  9. Estimating red pine site index in northern Minnesota.

    Treesearch

    1976-01-01

    Methods are presented for estimating red pine site index from the height growth of red pine, site index of several associated species (jack pine, white pine, white spruce, or quaking aspen), and from easily measured soil properties. The restrictions and limitations of each method and their relative precision are discussed.

  10. Polymorphic site index curves for red fir in California and southern Oregon

    Treesearch

    K. Leroy Dolph

    1991-01-01

    Polymorphic site index curves were developed from stem analysis data of 194 dominant red fir trees in California and southern Oregon. Site index was based on breast-height age and total tree height, with a base age of 50 years at breast height. Site index curves for breast height ages 10 to 160 years are presented for approximate estimates of site index. For more...

  11. Site index model for naturally regenerated even-aged longleaf pine

    Treesearch

    Dwight K. Lauer; John S. Kush

    2013-01-01

    Data from the Regional Longleaf Growth Study (339 permanent sample plots) were used to develop a site index model for naturally regenerated, even-aged longleaf pine (Pinus palustris Mill.). The site index equation was derived using the generalized algebraic difference approach and is base-age invariant. Using height as a measure of site productivity...

  12. How to estimate site index for oaks in the Missouri Ozarks

    Treesearch

    Robert A. McQuilkin

    1978-01-01

    How well does a certain tree species grow on a specific tract of land? Foresters traditionally answer this question in terms of "site index"--the average height of dominant and codominant trees at age 50 years in fully stocked, even-aged stands. Site index is widely used as an index of site quality because it is easy to measure and because it correlates well...

  13. Changes in Parent Motivation Predicts Changes in Body Mass Index z-Score (zBMI) and Dietary Intake Among Preschoolers Enrolled in a Family-Based Obesity Intervention

    PubMed Central

    Kuhl, Elizabeth S.; Filigno, Stephanie S.; Clifford, Lisa M.; Connor, Jared M.; Stark, Lori J.

    2014-01-01

    Objectives To examine whether changes in parent motivation over the course of a pediatric obesity intervention are significantly associated with long-term changes in treatment outcomes. Methods Study hypotheses were tested with a secondary data analysis of a randomized controlled trial (N = 42). Study analyses tested whether baseline to posttreatment change in total score for a self-report parent motivation measure (Parent Motivation Inventory [PMI]) was significantly associated with baseline to 6-month follow-up changes in body mass index z-score (zBMI), dietary variables, and physical activity. Results Increases in PMI were significantly associated with decreased zBMI, decreased consumption of sugar-sweetened beverages and sweets, and increased consumption of artificially sweetened beverages. Conclusions Given that increases in parent motivation were associated with some treatment benefits, future research should evaluate the impact of directly assessing and targeting parent motivation on weight outcomes for preschoolers participating in a weight management program. PMID:25016604

  14. Interim Site-index Curves for Longleaf Pine Plantations

    Treesearch

    William D. Boyer

    1980-01-01

    No single set of site-index curves can be uniformly applied to young longleaf pine plantations without a sacrifice in reliability. A recent study using plantation remeasurement data indicated that planting-site condition (old fields and mechanically prepared or unprepared cutover forest sites) has a major impact on early plantation height growth. Stand density (...

  15. Site index comparisons among northern hardwoods in northern Wisconsin and Upper Michigan.

    Treesearch

    Willard H. Carmean

    1979-01-01

    Compares site index for 13 species found in even-aged northern hardwood stands. Shows that these species differ greatly in site index when growing together, but can be grouped into four general site index classes. Site relations between several species differed with soil drainage.

  16. A topographic index to quantify the effect of mesoscale and form on site productivity

    Treesearch

    W. Henry McNab

    1992-01-01

    Landform is related to environmental factorsthat affectsite productivity in mountainous areas. I devised a simple index of landform and tested this index as a predictor of site index ín the Blue Ridge physiographic province. The landform index is the mean of eight slope gradients from plot center to skyline. A preliminary test indicated that the index was...

  17. Optimization of Photoactive Protein Z for Fast and Efficient Site-Specific Conjugation of Native IgG

    PubMed Central

    2015-01-01

    Antibody conjugates have been used in a variety of applications from immunoassays to drug conjugates. However, it is becoming increasingly clear that in order to maximize an antibody’s antigen binding ability and to produce homogeneous antibody-conjugates, the conjugated molecule should be attached onto IgG site-specifically. We previously developed a facile method for the site-specific modification of full length, native IgGs by engineering a recombinant Protein Z that forms a covalent link to the Fc domain of IgG upon exposure to long wavelength UV light. To further improve the efficiency of Protein Z production and IgG conjugation, we constructed a panel of 13 different Protein Z variants with the UV-active amino acid benzoylphenylalanine (BPA) in different locations. By using this panel of Protein Z to cross-link a range of IgGs from different hosts, including human, mouse, and rat, we discovered two previously unknown Protein Z variants, L17BPA and K35BPA, that are capable of cross-linking many commonly used IgG isotypes with efficiencies ranging from 60% to 95% after only 1 h of UV exposure. When compared to existing site-specific methods, which often require cloning or enzymatic reactions, the Protein Z-based method described here, utilizing the L17BPA, K35BPA, and the previously described Q32BPA variants, represents a vastly more accessible and efficient approach that is compatible with nearly all native IgGs, thus making site-specific conjugation more accessible to the general research community. PMID:25121619

  18. Optimization of photoactive protein Z for fast and efficient site-specific conjugation of native IgG.

    PubMed

    Hui, James Z; Tsourkas, Andrew

    2014-09-17

    Antibody conjugates have been used in a variety of applications from immunoassays to drug conjugates. However, it is becoming increasingly clear that in order to maximize an antibody's antigen binding ability and to produce homogeneous antibody-conjugates, the conjugated molecule should be attached onto IgG site-specifically. We previously developed a facile method for the site-specific modification of full length, native IgGs by engineering a recombinant Protein Z that forms a covalent link to the Fc domain of IgG upon exposure to long wavelength UV light. To further improve the efficiency of Protein Z production and IgG conjugation, we constructed a panel of 13 different Protein Z variants with the UV-active amino acid benzoylphenylalanine (BPA) in different locations. By using this panel of Protein Z to cross-link a range of IgGs from different hosts, including human, mouse, and rat, we discovered two previously unknown Protein Z variants, L17BPA and K35BPA, that are capable of cross-linking many commonly used IgG isotypes with efficiencies ranging from 60% to 95% after only 1 h of UV exposure. When compared to existing site-specific methods, which often require cloning or enzymatic reactions, the Protein Z-based method described here, utilizing the L17BPA, K35BPA, and the previously described Q32BPA variants, represents a vastly more accessible and efficient approach that is compatible with nearly all native IgGs, thus making site-specific conjugation more accessible to the general research community.

  19. Applying site-index curves to northern hardwoods in New Hampshire

    Treesearch

    Dale S. Solomon

    1968-01-01

    Describes a new method for testing site-index curves. Study results indicate that Vermont site-index curves for yellow birch, paper birch, white ash, and sugar maple, and New York-Connecticut curves for red maple, can be applied satisfactorily in New Hampshire when used with certain precautions and corrections.

  20. Site index prediction tables for black, scarlet and white oaks in southeastern Missouri.

    Treesearch

    Robert A. McQuilkin

    1974-01-01

    Site index prediction tables for black, scarlet, and white oaks for southeastern Missouri are presented based on site index/height regressions of data from 741 sectioned trees. Formulae for site index conversion between species and confidence intervals for mean stand site index estimates are also presented.

  1. WIND Toolkit Power Data Site Index

    DOE Data Explorer

    Draxl, Caroline; Mathias-Hodge, Bri

    2016-10-19

    This spreadsheet contains per-site metadata for the WIND Toolkit sites and serves as an index for the raw data hosted on Globus connect (nrel#globus:/globusro/met_data). Aside from the metadata, per site average power and capacity factor are given. This data was prepared by 3TIER under contract by NREL and is public domain. Authoritative documentation on the creation of the underlying dataset is at: Final Report on the Creation of the Wind Integration National Dataset (WIND) Toolkit and API: http://www.nrel.gov/docs/fy16osti/66189.pdf

  2. Polymorphic site index curves for white pine in the southern Appalachians

    Treesearch

    Donald E. Beck

    1971-01-01

    Site index curves are presented for natural stands of even-aged white pine in the southern Appalachians. The curves are based on measured height-growth trends in 42 stands. Shape of the height-growth curves was shown to change progressively with the level of site index, and these polymorphic trends are incorporated in the finished site-index curves. Comparison of the...

  3. Site index curves for unmanaged stands of California black oak

    Treesearch

    Robert F. Powers

    1972-01-01

    California black oak (Quercus kelloggii Newb.) is a potentially valuable species of wide distribution in California and southern Oregon. Site index curves related to slope aspect and to the site index of a close associate-ponderosa pine have been developed, and are reported for the first time in this Note. The curves should be useful in estimating...

  4. Changes in parent motivation predicts changes in body mass index z-score (zBMI) and dietary intake among preschoolers enrolled in a family-based obesity intervention.

    PubMed

    Van Allen, Jason; Kuhl, Elizabeth S; Filigno, Stephanie S; Clifford, Lisa M; Connor, Jared M; Stark, Lori J

    2014-10-01

    To examine whether changes in parent motivation over the course of a pediatric obesity intervention are significantly associated with long-term changes in treatment outcomes.   Study hypotheses were tested with a secondary data analysis of a randomized controlled trial (N = 42). Study analyses tested whether baseline to posttreatment change in total score for a self-report parent motivation measure (Parent Motivation Inventory [PMI]) was significantly associated with baseline to 6-month follow-up changes in body mass index z-score (zBMI), dietary variables, and physical activity.   Increases in PMI were significantly associated with decreased zBMI, decreased consumption of sugar-sweetened beverages and sweets, and increased consumption of artificially sweetened beverages.   Given that increases in parent motivation were associated with some treatment benefits, future research should evaluate the impact of directly assessing and targeting parent motivation on weight outcomes for preschoolers participating in a weight management program. © The Author 2014. Published by Oxford University Press on behalf of the Society of Pediatric Psychology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  5. Structure-function analysis of the extracellular domain of the pneumococcal cell division site positioning protein MapZ

    NASA Astrophysics Data System (ADS)

    Manuse, Sylvie; Jean, Nicolas L.; Guinot, Mégane; Lavergne, Jean-Pierre; Laguri, Cédric; Bougault, Catherine M.; Vannieuwenhze, Michael S.; Grangeasse, Christophe; Simorre, Jean-Pierre

    2016-06-01

    Accurate placement of the bacterial division site is a prerequisite for the generation of two viable and identical daughter cells. In Streptococcus pneumoniae, the positive regulatory mechanism involving the membrane protein MapZ positions precisely the conserved cell division protein FtsZ at the cell centre. Here we characterize the structure of the extracellular domain of MapZ and show that it displays a bi-modular structure composed of two subdomains separated by a flexible serine-rich linker. We further demonstrate in vivo that the N-terminal subdomain serves as a pedestal for the C-terminal subdomain, which determines the ability of MapZ to mark the division site. The C-terminal subdomain displays a patch of conserved amino acids and we show that this patch defines a structural motif crucial for MapZ function. Altogether, this structure-function analysis of MapZ provides the first molecular characterization of a positive regulatory process of bacterial cell division.

  6. LexA Binds to Transcription Regulatory Site of Cell Division Gene ftsZ in Toxic Cyanobacterium Microcystis aeruginosa.

    PubMed

    Honda, Takashi; Morimoto, Daichi; Sako, Yoshihiko; Yoshida, Takashi

    2018-05-17

    Previously, we showed that DNA replication and cell division in toxic cyanobacterium Microcystis aeruginosa are coordinated by transcriptional regulation of cell division gene ftsZ and that an unknown protein specifically bound upstream of ftsZ (BpFz; DNA-binding protein to an upstream site of ftsZ) during successful DNA replication and cell division. Here, we purified BpFz from M. aeruginosa strain NIES-298 using DNA-affinity chromatography and gel-slicing combined with gel electrophoresis mobility shift assay (EMSA). The N-terminal amino acid sequence of BpFz was identified as TNLESLTQ, which was identical to that of transcription repressor LexA from NIES-843. EMSA analysis using mutant probes showed that the sequence GTACTAN 3 GTGTTC was important in LexA binding. Comparison of the upstream regions of lexA in the genomes of closely related cyanobacteria suggested that the sequence TASTRNNNNTGTWC could be a putative LexA recognition sequence (LexA box). Searches for TASTRNNNNTGTWC as a transcriptional regulatory site (TRS) in the genome of M. aeruginosa NIES-843 showed that it was present in genes involved in cell division, photosynthesis, and extracellular polysaccharide biosynthesis. Considering that BpFz binds to the TRS of ftsZ during normal cell division, LexA may function as a transcriptional activator of genes related to cell reproduction in M. aeruginosa, including ftsZ. This may be an example of informality in the control of bacterial cell division.

  7. Revised Site Index Curves for Balsam Fir and White Spruce in the Lake States

    Treesearch

    Willard H. Carmean; Jerold T. Hahn

    1981-01-01

    The original site index curves for balsam fir and white spruce are revised from a breast height age to a total age basis. Site index values from these revised curves are thus comparable to index values for other species that are based upon total tree age. This note also includes formulations for estimating site index by using computers or programmable, hand-...

  8. Z-Index Parameterization for Volumetric CT Image Reconstruction via 3-D Dictionary Learning.

    PubMed

    Bai, Ti; Yan, Hao; Jia, Xun; Jiang, Steve; Wang, Ge; Mou, Xuanqin

    2017-12-01

    Despite the rapid developments of X-ray cone-beam CT (CBCT), image noise still remains a major issue for the low dose CBCT. To suppress the noise effectively while retain the structures well for low dose CBCT image, in this paper, a sparse constraint based on the 3-D dictionary is incorporated into a regularized iterative reconstruction framework, defining the 3-D dictionary learning (3-DDL) method. In addition, by analyzing the sparsity level curve associated with different regularization parameters, a new adaptive parameter selection strategy is proposed to facilitate our 3-DDL method. To justify the proposed method, we first analyze the distributions of the representation coefficients associated with the 3-D dictionary and the conventional 2-D dictionary to compare their efficiencies in representing volumetric images. Then, multiple real data experiments are conducted for performance validation. Based on these results, we found: 1) the 3-D dictionary-based sparse coefficients have three orders narrower Laplacian distribution compared with the 2-D dictionary, suggesting the higher representation efficiencies of the 3-D dictionary; 2) the sparsity level curve demonstrates a clear Z-shape, and hence referred to as Z-curve, in this paper; 3) the parameter associated with the maximum curvature point of the Z-curve suggests a nice parameter choice, which could be adaptively located with the proposed Z-index parameterization (ZIP) method; 4) the proposed 3-DDL algorithm equipped with the ZIP method could deliver reconstructions with the lowest root mean squared errors and the highest structural similarity index compared with the competing methods; 5) similar noise performance as the regular dose FDK reconstruction regarding the standard deviation metric could be achieved with the proposed method using (1/2)/(1/4)/(1/8) dose level projections. The contrast-noise ratio is improved by ~2.5/3.5 times with respect to two different cases under the (1/8) dose level compared

  9. Site Index for Loblolly Plantations on Cutover Sites in the West Gulf Coastal Plain

    Treesearch

    T.W. Popham; D.P. Feduccia; T.R. Deli; W.F. Mann; T.E. Campbell

    1979-01-01

    Functions used previously to derive height-age relationships for southern pines are compared in order to develop new site index curves for loblolly pine plantations on cutover sites in the lower West Gulf.

  10. Site index prediction tables for oak in northwestern West Virginia

    Treesearch

    Neil Lamson

    1980-01-01

    Prediction tables for even-aged stands of white, chestnut, northern red, scarlet, and black oaks can be used to estimate the site index of forest land in 13 counties of northwestern West Virginia. The half-width of the 95 percent confidence interval of the predicted site index is included; it can be used to determine the number of sample trees necessary to attain given...

  11. Height intercept for estimating site index in young ponderosa pine plantations and natural stands

    Treesearch

    William W. Oliver

    1972-01-01

    Site index is difficult to estimate with any reliability in ponderosa pine (Pinus ponderosa Laws.) stands below 20 yeas old. A method of estimating site index based on 4-year height intercepts (total length of the first four internodes above breast height) is described. Equations based on two sets of published site-index curves were developed. They...

  12. White Pine Site Index for the Southern Forest Survey

    Treesearch

    Bernard R. Parresol; John S. Vissage

    1998-01-01

    Second-growth white pine age-height data a A base-ageinvariant polymorphic site index equation was used to model the white pine (Pinus strobus L.) site-quality data provided by Frothingham (1914). These data are the accepted standard used by the Southern Forest Inventory and Analysis unit of the U.S. Department of Agriculture, Forest Service. An all...

  13. Z-scan theoretical and experimental studies for accurate measurements of the nonlinear refractive index and absorption of optical glasses near damage threshold

    NASA Astrophysics Data System (ADS)

    Olivier, Thomas; Billard, Franck; Akhouayri, Hassan

    2004-06-01

    Self-focusing is one of the dramatic phenomena that may occur during the propagation of a high power laser beam in a nonlinear material. This phenomenon leads to a degradation of the wave front and may also lead to a photoinduced damage of the material. Realistic simulations of the propagation of high power laser beams require an accurate knowledge of the nonlinear refractive index γ. In the particular case of fused silica and in the nanosecond regime, it seems that electronic mechanisms as well as electrostriction and thermal effects can lead to a significant refractive index variation. Compared to the different methods used to measure this parmeter, the Z-scan method is simple, offers a good sensitivity and may give absolute measurements if the incident beam is accurately studied. However, this method requires a very good knowledge of the incident beam and of its propagation inside a nonlinear sample. We used a split-step propagation algorithm to simlate Z-scan curves for arbitrary beam shape, sample thickness and nonlinear phase shift. According to our simulations and a rigorous analysis of the Z-scan measured signal, it appears that some abusive approximations lead to very important errors. Thus, by reducing possible errors on the interpretation of Z-scan experimental studies, we performed accurate measurements of the nonlinear refractive index of fused silica that show the significant contribution of nanosecond mechanisms.

  14. Use of dominant tree heights in determining site index for Douglas-fir.

    Treesearch

    George R. Staebler

    1948-01-01

    Measuring heights of Douglas-fir trees for the determination of site index is a time-consuming job, especially in dense stands. Both dominant and codominant trees must be measured since site index curves represent the average height of dominants and codominants. It has been suggested that considerable time might be saved if only dominant trees were measured, since...

  15. Cardiometabolic risk assessments by body mass index z-score or waist-to-height ratio in a multiethnic sample of sixth-graders

    USDA-ARS?s Scientific Manuscript database

    Convention defines pediatric adiposity by the body mass index z-score (BMIz) referenced to normative growth charts. Waist-to-height ratio (WHtR) does not depend on sex-and-age references. In the HEALTHY Study enrollment sample, we compared BMIz with WHtR for ability to identify adverse cardiometabol...

  16. Site Index Evaluations in a 100-Year-Old Eastern White Pine Plantation at the Biltmore Estate, NC

    Treesearch

    W. Henry McNab; Brian A. Ritter

    1999-01-01

    The precision of these equations for estimating site index and the effects of four topographic variables on total height were evaluated in a 1.6-acre planted stand of 100-year-old eastern white pines (Pinus strobus L.) on the Biltmore Estate near Asheville, NC. A polymorphic site index equation developed for the Southern Appalachian Mountains was...

  17. Site index curves for young-growth California white fir on the western slopes of the Sierra Nevada

    Treesearch

    K. Leroy Dolph

    1987-01-01

    Site index curves for young-growth California white fir were developed by using stem analysis data from 77 dominant and codominant trees growing in mixed-coniferstands on the western slopes of the Sierra Nevada. Site index reference age is 50 years at breast height. A family of 11 curves is presented for site index estimation. For more precise estimates, the site index...

  18. The Effectiveness of Web Search Engines to Index New Sites from Different Countries

    ERIC Educational Resources Information Center

    Pirkola, Ari

    2009-01-01

    Introduction: Investigates how effectively Web search engines index new sites from different countries. The primary interest is whether new sites are indexed equally or whether search engines are biased towards certain countries. If major search engines show biased coverage it can be considered a significant economic and political problem because…

  19. Site index curves for black, white, scarlet, and chestnut oaks in the Central States.

    Treesearch

    Willard H. Carmean

    1971-01-01

    Stem analyses showed polymorphic patterns of height growth for each species and for different levels of site quality. New site index curves are presented that show better height growth in later years than predicted by older harmonized site index curves.

  20. Protonation state of the Cu4S2 CuZ site in nitrous oxide reductase: redox dependence and insight into reactivity

    PubMed Central

    Johnston, Esther M.; Dell’Acqua, Simone; Pauleta, Sofia R.; Moura, Isabel; Solomon, Edward I.

    2015-01-01

    Spectroscopic and computational methods have been used to determine the protonation state of the edge sulfur ligand in the Cu4S2 CuZ form of the active site of nitrous oxide reductase (N2OR) in its 3CuICuII (1-hole) and 2CuI2CuII (2-hole) redox states. The EPR, absorption, and MCD spectra of 1-hole CuZ indicate that the unpaired spin in this site is evenly delocalized over CuI, CuII, and CuIV. 1-hole CuZ is shown to have a μ2-thiolate edge ligand from the observation of S-H bending modes in the resonance Raman spectrum at 450 and 492 cm−1 that have significant deuterium isotope shifts (−137 cm−1) and are not perturbed up to pH 10. 2-hole CuZ is characterized with absorption and resonance Raman spectroscopies as having two Cu-S stretching vibrations that profile differently. DFT models of the 1-hole and 2-hole CuZ sites are correlated to these spectroscopic features to determine that 2-hole CuZ has a μ2-sulfide edge ligand at neutral pH. The slow two electron (+1 proton) reduction of N2O by 1-hole CuZ is discussed and the possibility of a reaction between 2-hole CuZ and O2 is considered. PMID:26417423

  1. An improved growth intercept method for estimating site index of red pine.

    Treesearch

    David H. Alban

    1972-01-01

    Equations for predicting red pine (Pinus resinosa Ait.) site index from various internode lengths were developed from ring counts on sectioned trees form 69 natural stands in Minnesota. The precision of estimating site index was much improved by measuring the 5-year growth intercept beginning at 7 feet above the ground rather than at the conventional breast height....

  2. The limitations of transforming very high body mass indexes into z-scores among 8.7 million 2- to 4-year-old children

    USDA-ARS?s Scientific Manuscript database

    To examine the associations among several body mass index (BMI) metrics (z-scores, percent of the 95th percentile (%BMIp95) and BMI minus 95th percentile as calculated in the growth charts from the Centers for Disease Control and Prevention (CDC). It is known that the widely used BMI z-scores (BMIz)...

  3. Environmental Chemistry Methods (ECM) Index - Z

    EPA Pesticide Factsheets

    Laboratories use testing methods to identify pesticides in water and soil. Environmental chemistry methods test soil and water samples to determine the fate of pesticides in the environment. Find methods for chemicals with Z as the first character.

  4. Relationship between aerodynamic roughness length and bulk sedge leaf area index in a mixed-species boreal mire complex

    NASA Astrophysics Data System (ADS)

    Alekseychik, P. K.; Korrensalo, A.; Mammarella, I.; Vesala, T.; Tuittila, E.-S.

    2017-06-01

    Leaf area index (LAI) is an important parameter in natural ecosystems, representing the seasonal development of vegetation and photosynthetic potential. However, direct measurement techniques require labor-intensive field campaigns that are usually limited in time, while remote sensing approaches often do not yield reliable estimates. Here we propose that the bulk LAI of sedges (LAIs) can be estimated alternatively from a micrometeorological parameter, the aerodynamic roughness length for momentum (z0). z0 can be readily calculated from high-response turbulence and other meteorological data, typically measured continuously and routinely available at ecosystem research sites. The regressions of LAI versus z0 were obtained using the data from two Finnish natural sites representative of boreal fen and bog ecosystems. LAIs was found to be well correlated with z0 and sedge canopy height. Superior method performance was demonstrated in the fen ecosystem where the sedges make a bigger contribution to overall surface roughness than in bogs.

  5. Annotated Administrative Record Site-Specific Document Index, American Drum & Pallet Co. Removal Site, Memphis, Shelby County, Tennessee

    EPA Pesticide Factsheets

    Contains annotated index of site specific documents for the American Drum & Pallet Co. Removal Site in Memphis, Shelby County, Tennessee, January 9, 2008 Region ID: 04 DocID: 10517016, DocDate: 01-09-2008

  6. Site Index Curves For Upland Oak in the Southeast

    Treesearch

    David J. Olson

    1959-01-01

    These site index curves are based on 697 observations of height on age for white, northern red, southern red, scarlet, black, and chestnut oak in the Virginia- Carolina Piedmont and the Southern Appalachian Mountains.

  7. Landform and terrain shape indices are related to oak site index in the Missouri Ozarks

    Treesearch

    Jason L. Villwock; John M. Kabrick; W. Henry McNab; Daniel C. Dey

    2011-01-01

    In the Southern Appalachians, metrics for quantifying the geometric shape of the land surface (terrain shape index or "tsi") and of the landform (land form index or "lfi") were developed and found to be correlated to yellow-poplar site index. However, the utility of these metrics for predicting site index for oaks in the Ozark Highlands has not been...

  8. A New Numerical Method for Z2 Topological Insulators with Strong Disorder

    NASA Astrophysics Data System (ADS)

    Akagi, Yutaka; Katsura, Hosho; Koma, Tohru

    2017-12-01

    We propose a new method to numerically compute the Z2 indices for disordered topological insulators in Kitaev's periodic table. All of the Z2 indices are derived from the index formulae which are expressed in terms of a pair of projections introduced by Avron, Seiler, and Simon. For a given pair of projections, the corresponding index is determined by the spectrum of the difference between the two projections. This difference exhibits remarkable and useful properties, as it is compact and has a supersymmetric structure in the spectrum. These properties enable highly efficient numerical calculation of the indices of disordered topological insulators. The method, which we propose, is demonstrated for the Bernevig-Hughes-Zhang and Wilson-Dirac models whose topological phases are characterized by a Z2 index in two and three dimensions, respectively.

  9. Errors in Site Index Determination Caused by Tree Age Variation in Even-Aged Oak Stands

    Treesearch

    Robert A. McQuilkin

    1975-01-01

    Age deviations of individual trees in even-aged oak stands in Missouri caused variations in the height growth patterns and site index estimates of these younger or older trees. A correction factor for site index estimates on these age-deviant trees is given.

  10. Site-index curves for young-growth ponderosa pine in northern Arizona

    Treesearch

    Charles O. Minor

    1964-01-01

    The productive capacity or site quality of an area enters into nearly every phase of forest management from regeneration to final harvest. No standards or measures of site quality have been developed specifically for ponderosa pine in the Southwest, which handicaps the forest manager. The major objective of the present study was to develop the basic site-index curves...

  11. Development of growth and yield models for southern hardwoods: site index determinations

    Treesearch

    John Paul McTague; Daniel J. Robison; David O' Loughlin; Joseph Roise; Robert Kellison

    2006-01-01

    Growth and yield data from across 13 southern States, collected from 1967 to 2004 from fully-stocked even-aged southern hardwood forests on a variety of site types, was used to calculate site index curves. These derived curves provide an efficient means to evaluate the productivity-age relation which varies across many sites. These curves were derived for mixed-species...

  12. Nuclear facility decommissioning and site remedial actions: A selected bibliography, Volume 13: Part 2, Indexes

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Goins, L.F.; Webb, J.R.; Cravens, C.D.

    1992-09-01

    This is part 2 of a bibliography on nuclear facility decommissioning and site remedial action. This report contains indexes on the following: authors, corporate affiliation, title words, publication description, geographic location, subject category, and key word.

  13. Crystal and electronic structures, luminescence properties of Eu 2+-doped Si 6-zAl zO zN 8-z and M ySi 6-zAl z-yO z+yN 8-z-y ( M=2Li, Mg, Ca, Sr, Ba)

    NASA Astrophysics Data System (ADS)

    Li, Y. Q.; Hirosaki, N.; Xie, R. J.; Takeda, T.; Mitomo, M.

    2008-12-01

    The crystal structure, electronic structure, and photoluminescence properties of Eu xSi 6-zAl z-xO z+xN 8-z-x ( x=0-0.1, 0< z<1) and Eu xM ySi 6-zAl z-x-yO z+x+yN 8-z-x-y ( M=2Li, Mg, Ca, Sr, Ba) have been studied. Single-phase Eu xSi 6-zAl z-xO z+xN 8-z-x can be obtained in very narrow ranges of x⩽0.06 ( z=0.15) and z<0.5 ( x=0.3), indicating that limited Eu 2+ ions can be incorporated into nitrogen-rich Si 6-zAl zO zN 8-z. The Eu 2+ ion is found to occupy the 2 b site in a hexagonal unit cell ( P6 3/ m) and directly connected by six adjacent nitrogen/oxygen atoms ranging 2.4850-2.5089 Å. The calculated host band gaps by the relativistic DV-X α method are about 5.55 and 5.45 eV (without Eu 2+ 4 f5 d levels) for x=0 and 0.013 in Eu xSi 6-zAl z-xO z+xN 8-z-x ( z=0.15), in which the top of the 5 d orbitals overlap with the Si-3 s3 p and N-2 p orbitals within the bottom of the conduction band of the host. Eu xSi 6-zAl z-xO z+xN 8-z-x shows a strong green emission with a broad Eu 2+ band centered at about 530 nm under UV to near-UV excitation range. The excitation and emission spectra are hardly modified by Eu concentration and dual-doping ions of Li and other alkaline-earth ions with Eu. Higher Eu concentrations can significantly quench the luminescence of Eu 2+ and decrease the thermal quenching temperature. In addition, the emission spectrum can only be slightly tuned to the longer wavelengths (˜529-545 nm) by increasing z within the solid solution range of z<0.5. Furthermore, the luminescence intensity of Eu xSi 6-zAl z-xO z+xN 8-z-x can be improved by increasing z and the dual-doping of Li and Ba.

  14. A zone-specific fish-based biotic index as a management tool for the Zeeschelde estuary (Belgium).

    PubMed

    Breine, Jan; Quataert, Paul; Stevens, Maarten; Ollevier, Frans; Volckaert, Filip A M; Van den Bergh, Ericia; Maes, Joachim

    2010-07-01

    Fish-based indices monitor changes in surface waters and are a valuable aid in communication by summarising complex information about the environment (Harrison and Whitfield, 2004). A zone-specific fish-based multimetric estuarine index of biotic integrity (Z-EBI) was developed based on a 13 year time series of fish surveys from the Zeeschelde estuary (Belgium). Sites were pre-classified using indicators of anthropogenic impact. Metrics showing a monotone response with pressure classes were selected for further analysis. Thresholds for the good ecological potential (GEP) were defined from references. A modified trisection was applied for the other thresholds. The Z-EBI is defined by the average of the metric scores calculated over a one year period and translated into an ecological quality ratio (EQR). The indices integrate structural and functional qualities of the estuarine fish communities. The Z-EBI performances were successfully validated for habitat degradation in the various habitat zones. Copyright 2010 Elsevier Ltd. All rights reserved.

  15. Height growth and site index curves for Douglas-fir on dry sites in the Willamette National Forest.

    Treesearch

    Joseph E Means; Mary E. Helm

    1985-01-01

    Equations and curves are presented for estimating height and site index of Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) on hot, dry sites in the Willamette National Forest in western Oregon. The equations are based on the dissected stems of 27 trees. The curves differ from those previously published for Douglas-fir. Instructions are presented...

  16. Location of Dual Sites in E. coli FtsZ Important for Degradation by ClpXP; One at the C-Terminus and One in the Disordered Linker

    PubMed Central

    Camberg, Jodi L.; Viola, Marissa G.; Rea, Leslie; Hoskins, Joel R.; Wickner, Sue

    2014-01-01

    ClpXP is a two-component ATP-dependent protease that unfolds and degrades proteins bearing specific recognition signals. One substrate degraded by Escherichia coli ClpXP is FtsZ, an essential cell division protein. FtsZ forms polymers that assemble into a large ring-like structure, termed the Z-ring, during cell division at the site of constriction. The FtsZ monomer is composed of an N-terminal polymerization domain, an unstructured linker region and a C-terminal conserved region. To better understand substrate selection by ClpXP, we engineered FtsZ mutant proteins containing amino acid substitutions or deletions near the FtsZ C-terminus. We identified two discrete regions of FtsZ important for degradation of both FtsZ monomers and polymers by ClpXP in vitro. One region is located 30 residues away from the C-terminus in the unstructured linker region that connects the polymerization domain to the C-terminal region. The other region is near the FtsZ C-terminus and partially overlaps the recognition sites for several other FtsZ-interacting proteins, including MinC, ZipA and FtsA. Mutation of either region caused the protein to be more stable and mutation of both caused an additive effect, suggesting that both regions are important. We also observed that in vitro MinC inhibits degradation of FtsZ by ClpXP, suggesting that some of the same residues in the C-terminal site that are important for degradation by ClpXP are important for binding MinC. PMID:24722340

  17. Site index, height growth, normal yields and stocking levels for larch in Oregon and Washington.

    Treesearch

    P.H. Cochran

    1985-01-01

    Even-aged stands of larch in Oregon and Washington have cubic volume yields similar to yields from larch in Idaho and Montana. Site index values derived from the heights of the single tallest tree on 1/5-acre plots at an age at breast height of 50 years range from 50 to 110 feet. These values have the same index to productivity as the site index values of 30 to 90 feet...

  18. Direct conversion of bio-ethanol to isobutene on nanosized Zn(x)Zr(y)O(z) mixed oxides with balanced acid-base sites.

    PubMed

    Sun, Junming; Zhu, Kake; Gao, Feng; Wang, Chongmin; Liu, Jun; Peden, Charles H F; Wang, Yong

    2011-07-27

    We report the design and synthesis of nanosized Zn(x)Zr(y)O(z) mixed oxides for direct and high-yield conversion of bio-ethanol to isobutene (~83%). ZnO is addded to ZrO(2) to selectively passivate zirconia's strong Lewis acidic sites and weaken Brönsted acidic sites, while simultaneously introducing basicity. As a result, the undesired reactions of bio-ethanol dehydration and acetone polymerization/coking are suppressed. Instead, a surface basic site-catalyzed ethanol dehydrogenation to acetaldehyde, acetaldehyde to acetone conversion via a complex pathway including aldol-condensation/dehydrogenation, and a Brönsted acidic site-catalyzed acetone-to-isobutene reaction pathway dominates on the nanosized Zn(x)Zr(y)O(z) mixed oxide catalyst, leading to a highly selective process for direct conversion of bio-ethanol to isobutene.

  19. Slash pine plantation site index curves for the West Gulf

    Treesearch

    Stanley J. Zarnoch; D.P. Feduccia

    1984-01-01

    New slash pine (Pinus elliottii var. elliottii Engelm) plantation site index curves have been developed for the West Gulf. The guide curve is mathematically simpler than other available models, tracks the data well, and is more biologically reasonable outside the range of data.

  20. Correlation of body mass index Z-scores with glucose and lipid profiles among overweight and obese children and adolescents.

    PubMed

    Nogueira-de-Almeida, Carlos Alberto; Mello, Elza Daniel de

    To evaluate the prevalence of abnormalities in plasma lipid and glucose profiles among overweight and obese children and adolescents, and to assess the presence of a correlation between body mass index Z-scores and indicators of comorbidities related to both profiles. This was a multicenter cross-sectional study conducted at two outpatient clinics. The study included all 417 comers for the first visit from 2008 to 2012, aged between 7 and 18 years, with BMI above the Z-score +1. Anthropometry and blood sampling were obtained. The prevalence of dyslipidemias, hyperglycemia, and insulin resistance were evaluated, together with the correlations of these variables with the increase of Z-BMI. Dyslipidemia was observed in 43.4% of the boys and 66.1% of the girls, with no difference between genders. High glucose levels were detected in 6.2% of the individuals. Insulin resistance was present in 32.3% and 41.7% of the cases, with no statistical significance between boys and girls. Correlations between the Z-BMI were noted for triglycerides in the entire group and among girls; for HDL-c, only among girls; for glucose, a correlation was observed for the entire group, but not when stratified by gender. The indicators of insulin resistance were all correlated with Z-BMI, even when corrected for age. Overweight and obesity give origin to a high prevalence of dyslipidemia and insulin resistance. BMI Z-scores showed a weak positive correlation with glucose and triglyceride, and negative with HDL-c. In turn, the strongest positive correlation was found with insulin resistance indicators. Copyright © 2017 Sociedade Brasileira de Pediatria. Published by Elsevier Editora Ltda. All rights reserved.

  1. Growth Intercept as an Indicator of Site Index in Natural Stands of White Pine in the Southern Appalachians

    Treesearch

    Donald E. Beck

    1971-01-01

    Equations are presented for estimating site index from periodic height growth in natural, even-aged stands of white pine in the Southern Appalachians. Site index can be estimated from height growth during both 3-year and 5-year periods, beginning with the year in which breast height was reached. In stands less than 15 years old, estimates of site index from 5-year...

  2. Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex

    PubMed Central

    Tramantano, Michael; Sun, Lu; Au, Christy; Labuz, Daniel; Liu, Zhimin; Chou, Mindy; Shen, Chen; Luk, Ed

    2016-01-01

    The assembly of the preinitiation complex (PIC) occurs upstream of the +1 nucleosome which, in yeast, obstructs the transcription start site and is frequently assembled with the histone variant H2A.Z. To understand the contribution of the transcription machinery in the disassembly of the +1 H2A.Z nucleosome, conditional mutants were used to block PIC assembly. A quantitative ChIP-seq approach, which allows detection of global occupancy change, was employed to measure H2A.Z occupancy. Blocking PIC assembly resulted in promoter-specific H2A.Z accumulation, indicating that the PIC is required to evict H2A.Z. By contrast, H2A.Z eviction was unaffected upon depletion of INO80, a remodeler previously reported to displace nucleosomal H2A.Z. Robust PIC-dependent H2A.Z eviction was observed at active and infrequently transcribed genes, indicating that constitutive H2A.Z turnover is a general phenomenon. Finally, sites with strong H2A.Z turnover precisely mark transcript starts, providing a new metric for identifying cryptic and alternative sites of initiation. DOI: http://dx.doi.org/10.7554/eLife.14243.001 PMID:27438412

  3. Estimating site index from tree species composition in mixed stands of upland eastern hardwoods: Should shrubs be included?

    Treesearch

    W. Henry McNab

    2010-01-01

    Site index is the most widely used method for site quality assessment in hardwood forests of the eastern United States. Its application in most oak (Quercus sp. L.) dominated stands is often problematic, however, because available sample trees usually do not meet important underlying assumptions of the method. A prototype method for predicting site index from tree...

  4. The impact of low-Z and high-Z metal implants in IMRT: A Monte Carlo study of dose inaccuracies in commercial dose algorithms

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Spadea, Maria Francesca, E-mail: mfspadea@unicz.it; Verburg, Joost Mathias; Seco, Joao

    2014-01-15

    Purpose: The aim of the study was to evaluate the dosimetric impact of low-Z and high-Z metallic implants on IMRT plans. Methods: Computed tomography (CT) scans of three patients were analyzed to study effects due to the presence of Titanium (low-Z), Platinum and Gold (high-Z) inserts. To eliminate artifacts in CT images, a sinogram-based metal artifact reduction algorithm was applied. IMRT dose calculations were performed on both the uncorrected and corrected images using a commercial planning system (convolution/superposition algorithm) and an in-house Monte Carlo platform. Dose differences between uncorrected and corrected datasets were computed and analyzed using gamma index (Pγ{submore » <1}) and setting 2 mm and 2% as distance to agreement and dose difference criteria, respectively. Beam specific depth dose profiles across the metal were also examined. Results: Dose discrepancies between corrected and uncorrected datasets were not significant for low-Z material. High-Z materials caused under-dosage of 20%–25% in the region surrounding the metal and over dosage of 10%–15% downstream of the hardware. Gamma index test yielded Pγ{sub <1}>99% for all low-Z cases; while for high-Z cases it returned 91% < Pγ{sub <1}< 99%. Analysis of the depth dose curve of a single beam for low-Z cases revealed that, although the dose attenuation is altered inside the metal, it does not differ downstream of the insert. However, for high-Z metal implants the dose is increased up to 10%–12% around the insert. In addition, Monte Carlo method was more sensitive to the presence of metal inserts than superposition/convolution algorithm. Conclusions: The reduction in terms of dose of metal artifacts in CT images is relevant for high-Z implants. In this case, dose distribution should be calculated using Monte Carlo algorithms, given their superior accuracy in dose modeling in and around the metal. In addition, the knowledge of the composition of metal inserts improves the

  5. Formulas of Site Index Prediction Tables for Oak in Missouri

    Treesearch

    Harry V. Jr. Wiant; Robert A. McQuilkin

    1976-01-01

    Recently published site index prediction tables for oak in Missouri were fomulized using the "matchacurve" system. The average absolute differences between formula and table values were .8 feet for white oak and 1.4 feet for black and scarlet oaks; maximum differences were 3.0 and 4.2 feet, respectively.

  6. Variation in dietary intake and physical activity pattern as predictors of change in body mass index (BMI) Z-score among Brazilian adolescents.

    PubMed

    Enes, Carla C; Slater, Betzabeth

    2013-06-01

    To assess whether changes in dietary intake and physical activity pattern are associated with the annual body mass index (BMI) z-score change among adolescents. The study was conducted in public schools in the city of Piracicaba, Sao Paulo, Brazil, with a probabilistic sample of 431 adolescents participating in wave I (2004) (hereafter, baseline) and 299 in wave II (2005) (hereafter, follow-up). BMI, usual food intake, physical activity, screen time, sexual maturation and demographic variables were assessed twice. The association between annual change in food intake, physical activity, screen time, and annual BMI z-score changes were assessed by multiple regression. The study showed a positive variation in BMI z-score over one-year. Among variables related to physical activity pattern only playing videogame and using computer increased over the year. The intake of fruits and vegetables and sugar-sweetened beverages increased over one year, while the others variables showed a reduction. An increased consumption of fatty foods (β = 0.04, p = 0.04) and sweetened natural fruit juices (β = 0.05, p = 0.03) was positively associated with the rise in BMI z-score. Unhealthy dietary habits can predict the BMI z-score gain more than the physical activity pattern. The intake of fatty foods and sweetened fruit juices is associated with the BMI z-score over one year.

  7. Site index curves for white fir in the southwestern United States developed using a guide curve method

    Treesearch

    Robert L. Mathiasen; William K. Olsen; Carleton B. Edminster

    2006-01-01

    Site index curves for white fir (Abies concolor) in Arizona, New Mexico, and southwestern Colorado were developed using height-age measurements and an estimated guide curve and 95% confidence intervals for individual predictions. The curves were developed using height-age data for 1,048 white firs from 263 study sites distributed across eight...

  8. Impact of Age at Diagnosis and Hypothalamic Involvement on Body Mass Index Z-Score Change in Pediatric Brain Tumor Survivors.

    PubMed

    Strobel, Katie; Simpson, Pippa; Donohoue, Patricia A; Firat, Selim; Jogal, Sachin

    2016-01-01

    Obesity risk is increased for pediatric central nervous system tumor survivors. Hypothalamic involvement (HI) by tumor or treatment increases the risk. In healthy children, body mass index (BMI) normally declines until adiposity rebound (AR). We hypothesized that HI and diagnosis before AR would lead to increased BMI at follow-up. A chart review of 114 brain tumor survivors diagnosed between 2001-2011 at the Children's Hospital of Wisconsin extracted tumor location, treatment and BMI z-scores at diagnosis and 2-year follow-up. Children were categorized based on age at diagnosis relative to AR and presence/absence of HI. Children diagnosed pre-AR and post-AR with HI had higher BMI z-scores at 2-year follow-up (pre-AR: 1.6, post-AR: 1.3) than at diagnosis (0.5, 0.6). All groups without HI showed no increase in BMI z-score from diagnosis to 2-year follow-up (pre-AR: 0.7-0.6, during AR: 0.7-0.8, post-AR: 0.7-0.8). The pre-AR and during-AR cohorts with HI had a higher BMI z-score at 2-year follow-up relative to those without HI, while the post-AR group did not. Except for the post-AR group, patients with HI have increased BMI at 2 years after diagnosis compared to those without HI. Diagnosis pre-AR is associated with greater follow-up BMI z-score. © 2016 S. Karger AG, Basel.

  9. Simulating the effects of site index variation within loblolly pine plantations using an individual tree growth and yield model

    Treesearch

    Ralph L. Amateis; Harold E. Burkhart

    2016-01-01

    Site index is the most common metric of site productivity in loblolly pine plantations. Generally applied as a constant for a particular stand, it provides an overall measure of a site’s ability to grow trees. It is well known, however, that even the most uniform stands can have considerable variation in site index due to soil factors that influence microsite,...

  10. Site index curves for northern hardwoods in northern Wisconsin and Upper Michigan.

    Treesearch

    Willard H. Carmean

    1978-01-01

    Site index curves based on stem analyses were computed for 13 species found in even-aged, second growth northern hardwood stands. These curves showed that most species had similarly-shaped height growth curves in early years, but after 40 years differences in both rate and pattern of growth between species was evident for trees growing on medium and good sites. Most...

  11. An Updated Site Index Equation for Naturally Regenerated Longleaf Pine Stands

    Treesearch

    Jyoti N. Rayamajhi; John S. Kush; Ralph S. Meldahl

    1999-01-01

    From 1964 to 1967. the U.S. Forest Service established the Regional Longleaf Growth Study (RLGS) in the Gulf States with the objective of obtaining a database for the development of prediction systems for naturally regenerated, even-aged. longleaf pine stands. The database has been used for numerous quantitative studies. One of these efforts was a site index equation...

  12. Site index charts for Douglas-fir in the Pacific Northwest.

    Treesearch

    Grover A. Choate; Floyd A. Johnson

    1958-01-01

    Charts in this report can be used to estimate site index for Douglas-fir from stand age and from average total height of dominant and codominant trees. Table 1 and figure 2 in USDA Technical Bulletin 201 have been used for this purpose in the past. However, the table requires time-consuming interpolation and the figure gives only rough approximations.

  13. Evaluating Variability and Uncertainty of Geological Strength Index at a Specific Site

    NASA Astrophysics Data System (ADS)

    Wang, Yu; Aladejare, Adeyemi Emman

    2016-09-01

    Geological Strength Index (GSI) is an important parameter for estimating rock mass properties. GSI can be estimated from quantitative GSI chart, as an alternative to the direct observational method which requires vast geological experience of rock. GSI chart was developed from past observations and engineering experience, with either empiricism or some theoretical simplifications. The GSI chart thereby contains model uncertainty which arises from its development. The presence of such model uncertainty affects the GSI estimated from GSI chart at a specific site; it is, therefore, imperative to quantify and incorporate the model uncertainty during GSI estimation from the GSI chart. A major challenge for quantifying the GSI chart model uncertainty is a lack of the original datasets that have been used to develop the GSI chart, since the GSI chart was developed from past experience without referring to specific datasets. This paper intends to tackle this problem by developing a Bayesian approach for quantifying the model uncertainty in GSI chart when using it to estimate GSI at a specific site. The model uncertainty in the GSI chart and the inherent spatial variability in GSI are modeled explicitly in the Bayesian approach. The Bayesian approach generates equivalent samples of GSI from the integrated knowledge of GSI chart, prior knowledge and observation data available from site investigation. Equations are derived for the Bayesian approach, and the proposed approach is illustrated using data from a drill and blast tunnel project. The proposed approach effectively tackles the problem of how to quantify the model uncertainty that arises from using GSI chart for characterization of site-specific GSI in a transparent manner.

  14. Nuclear facility decommissioning and site remedial actions: A selected bibliography, Volume 13: Part 2, Indexes. Environmental Restoration Program

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Goins, L.F.; Webb, J.R.; Cravens, C.D.

    1992-09-01

    This is part 2 of a bibliography on nuclear facility decommissioning and site remedial action. This report contains indexes on the following: authors, corporate affiliation, title words, publication description, geographic location, subject category, and key word.

  15. Face Centered Cubic SnSe as a Z2 Trivial Dirac Nodal Line Material

    NASA Astrophysics Data System (ADS)

    Tateishi, Ikuma; Matsuura, Hiroyasu

    2018-07-01

    The presence of a Dirac nodal line in a time-reversal and inversion symmetric system is dictated by the Z2 index when spin-orbit interaction is absent. In a first principles calculation, we show that a Dirac nodal line can emerge in Z2 trivial material by calculating the band structure of SnSe in a face centered cubic lattice as an example. We qualitatively show that it becomes a topological crystalline insulator when spin-orbit interaction is taken into account. We clarify the origin of the Dirac nodal line by obtaining irreducible representations corresponding to bands and explain the triviality of the Z2 index. We construct an effective model representing the Dirac nodal line using the k · p method, and discuss the Berry phase and a surface state expected from the Dirac nodal line.

  16. Increasing body mass index z-score is continuously associated with complications of overweight in children, even in the healthy weight range.

    PubMed

    Bell, Lana M; Byrne, Sue; Thompson, Alisha; Ratnam, Nirubasini; Blair, Eve; Bulsara, Max; Jones, Timothy W; Davis, Elizabeth A

    2007-02-01

    Overweight/obesity in children is increasing. Incidence data for medical complications use arbitrary cutoff values for categories of overweight and obesity. Continuous relationships are seldom reported. The objective of this study is to report relationships of child body mass index (BMI) z-score as a continuous variable with the medical complications of overweight. This study is a part of the larger, prospective cohort Growth and Development Study. Children were recruited from the community through randomly selected primary schools. Overweight children seeking treatment were recruited through tertiary centers. Children aged 6-13 yr were community-recruited normal weight (n = 73), community-recruited overweight (n = 53), and overweight treatment-seeking (n = 51). Medical history, family history, and symptoms of complications of overweight were collected by interview, and physical examination was performed. Investigations included oral glucose tolerance tests, fasting lipids, and liver function tests. Adjusted regression was used to model each complication of obesity with age- and sex-specific child BMI z-scores entered as a continuous dependent variable. Adjusted logistic regression showed the proportion of children with musculoskeletal pain, obstructive sleep apnea symptoms, headaches, depression, anxiety, bullying, and acanthosis nigricans increased with child BMI z-score. Adjusted linear regression showed BMI z-score was significantly related to systolic and diastolic blood pressure, insulin during oral glucose tolerance test, total cholesterol, high-density lipoprotein, triglycerides, and alanine aminotransferase. Child's BMI z-score is independently related to complications of overweight and obesity in a linear or curvilinear fashion. Children's risks of most complications increase across the entire range of BMI values and are not defined by thresholds.

  17. Designing a generalized soil-adjusted vegetation index (GESAVI)

    NASA Astrophysics Data System (ADS)

    Gilabert, M. A.; Gonzalez Piqueras, Jose; Garcia-Haro, Joan; Melia, J.

    1998-12-01

    Operational monitoring of vegetative cover by remote sensing currently involves the utilization of vegetation indices (VIs), most of them being functions of the reflectance in red (R) and near-infrared (NIR) spectral bands. A generalized soil-adjusted vegetation index (GESAVI), theoretically based on a simple vegetation canopy model, is introduced. It is defined in terms of the soil line parameters (A and B) as: GESAVI equals (NIR-BR-A)/(R + Z), where Z is related to the red reflectance at the cross point between the soil line and vegetation isolines. Z can be considered as a soil adjustment coefficient which let this new index be considered as belonging to the SAVI family. In order to analyze the GESAVI sensitivity to soil brightness and soil color, both high resolution reflectance data from two laboratory experiments and data obtained by applying a radiosity model to simulate heterogeneous vegetation canopy scenes were used. VIs (including GESAVI, NDVI, PVI and SAVI family VIs) were computed and their correlation with LAI for the different soil backgrounds was analyzed. Results confirmed the lower sensitivity of GESAVI to soil background in most of the cases, thus becoming the most efficient index. This good index performance results from the fact that the isolines in the NIR-R plane are neither parallel to the soil line (as required by the PVI) nor convergent at the origin (as required by the NDVI) but they converge somewhere between the origin and infinity in the region of negative values of both NIR and R. This convergence point is not necessarily situated on the bisectrix, as required by other SAVI family indices.

  18. Refractive index gradient measurement across the thickness of a dielectric film by the prism coupling method

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Sokolov, Viktor I; Panchenko, Vladislav Ya; Seminogov, V N

    2012-08-31

    A method is proposed for measuring the refractive index gradient n(z) in nonuniformly thick dielectric films. The method is based on the excitation of waveguide modes in a film using the prism coupling technique and on the calculation of n(z) and film thickness H{sub f} with the help of the angular positions of the TE or TM modes. The method can be used for an arbitrary shape of the index modulation over the film thickness in the limit of a small gradient [{Delta} n(z)/n(z) || 1]. (laser applications and other topics in quantum electronics)

  19. Comparison of Ground-Based and Satellite-Derived Solar UV Index Levels at Six South African Sites.

    PubMed

    Cadet, Jean-Maurice; Bencherif, Hassan; Portafaix, Thierry; Lamy, Kévin; Ncongwane, Katlego; Coetzee, Gerrie J R; Wright, Caradee Y

    2017-11-14

    South Africa has been measuring the ground-based solar UV index for more than two decades at six sites to raise awareness about the impacts of the solar UV index on human health. This paper is an exploratory study based on comparison with satellite UV index measurements from the OMI/AURA experiment. Relative UV index differences between ground-based and satellite-derived data ranged from 0 to 45% depending on the site and year. Most of time, these differences appear in winter. Some ground-based stations' data had closer agreement with satellite-derived data. While the ground-based instruments are not intended for long-term trend analysis, they provide UV index information for public awareness instead, with some weak signs suggesting such long-term trends may exist in the ground-based data. The annual cycle, altitude, and latitude effects clearly appear in the UV index data measured in South Africa. This variability must be taken into account for the development of an excess solar UV exposure prevention strategy.

  20. Comparison of Ground-Based and Satellite-Derived Solar UV Index Levels at Six South African Sites

    PubMed Central

    Cadet, Jean-Maurice; Bencherif, Hassan; Portafaix, Thierry; Lamy, Kévin; Ncongwane, Katlego; Coetzee, Gerrie J. R.; Wright, Caradee Y.

    2017-01-01

    South Africa has been measuring the ground-based solar UV index for more than two decades at six sites to raise awareness about the impacts of the solar UV index on human health. This paper is an exploratory study based on comparison with satellite UV index measurements from the OMI/AURA experiment. Relative UV index differences between ground-based and satellite-derived data ranged from 0 to 45% depending on the site and year. Most of time, these differences appear in winter. Some ground-based stations’ data had closer agreement with satellite-derived data. While the ground-based instruments are not intended for long-term trend analysis, they provide UV index information for public awareness instead, with some weak signs suggesting such long-term trends may exist in the ground-based data. The annual cycle, altitude, and latitude effects clearly appear in the UV index data measured in South Africa. This variability must be taken into account for the development of an excess solar UV exposure prevention strategy. PMID:29135965

  1. An MSC2 Promoter-lacZ Fusion Gene Reveals Zinc-Responsive Changes in Sites of Transcription Initiation That Occur across the Yeast Genome

    PubMed Central

    Wu, Yi-Hsuan; Taggart, Janet; Song, Pamela Xiyao; MacDiarmid, Colin; Eide, David J.

    2016-01-01

    The Msc2 and Zrg17 proteins of Saccharomyces cerevisiae form a complex to transport zinc into the endoplasmic reticulum. ZRG17 is transcriptionally induced in zinc-limited cells by the Zap1 transcription factor. In this report, we show that MSC2 mRNA also increases (~1.5 fold) in zinc-limited cells. The MSC2 gene has two in-frame ATG codons at its 5’ end, ATG1 and ATG2; ATG2 is the predicted initiation codon. When the MSC2 promoter was fused at ATG2 to the lacZ gene, we found that unlike the chromosomal gene this reporter showed a 4-fold decrease in lacZ mRNA in zinc-limited cells. Surprisingly, β-galactosidase activity generated by this fusion gene increased ~7 fold during zinc deficiency suggesting the influence of post-transcriptional factors. Transcription of MSC2ATG2-lacZ was found to start upstream of ATG1 in zinc-replete cells. In zinc-limited cells, transcription initiation shifted to sites just upstream of ATG2. From the results of mutational and polysome profile analyses, we propose the following explanation for these effects. In zinc-replete cells, MSC2ATG2-lacZ mRNA with long 5’ UTRs fold into secondary structures that inhibit translation. In zinc-limited cells, transcripts with shorter unstructured 5’ UTRs are generated that are more efficiently translated. Surprisingly, chromosomal MSC2 did not show start site shifts in response to zinc status and only shorter 5’ UTRs were observed. However, the shifts that occur in the MSC2ATG2-lacZ construct led us to identify significant transcription start site changes affecting the expression of ~3% of all genes. Therefore, zinc status can profoundly alter transcription initiation across the yeast genome. PMID:27657924

  2. Self-referencing site index equations for unmanaged loblolly and slash pine plantations in east Texas

    Treesearch

    Dean W. Coble; Young-Jin Lee

    2010-01-01

    The Schnute growth function was used in this study to model site index for unmanaged or low-intensity managed loblolly pine (Pinus taeda, L.) and slash pine (Pinus elliottii, Engelm.) plantations in east Texas. The algebraic difference approach was used to derive an anamorphic base-age invariant site function that was fit as a...

  3. Assembly of an FtsZ Mutant Deficient in GTPase Activity Has Implications for FtsZ Assembly and the Role of the Z Ring in Cell Division

    PubMed Central

    Mukherjee, Amit; Saez, Cristian; Lutkenhaus, Joe

    2001-01-01

    FtsZ, the ancestral homologue of eukaryotic tubulins, assembles into the Z ring, which is required for cytokinesis in prokaryotic cells. Both FtsZ and tubulin have a GTPase activity associated with polymerization. Interestingly, the ftsZ2 mutant is viable, although the FtsZ2 mutant protein has dramatically reduced GTPase activity due to a glycine-for-aspartic acid substitution within the synergy loop. In this study, we have examined the properties of FtsZ2 and found that the reduced GTPase activity is not enhanced by DEAE-dextran-induced assembly, indicating it has a defective catalytic site. In the absence of DEAE-dextran, FtsZ2 fails to assemble unless supplemented with wild-type FtsZ. FtsZ has to be at or above the critical concentration for copolymerization to occur, indicating that FtsZ is nucleating the copolymers. The copolymers formed are relatively stable and appear to be stabilized by a GTP-cap. These results indicate that FtsZ2 cannot nucleate assembly in vitro, although it must in vivo. Furthermore, the stability of FtsZ-FtsZ2 copolymers argues that FtsZ2 polymers would be stable, suggesting that stable FtsZ polymers are able to support cell division. PMID:11717278

  4. Height growth and site index curves for western white pine in the Cascade Range of Washington and Oregon.

    Treesearch

    Robert O. Curtis; Nancy M. Diaz; Gary W. Clendenen

    1990-01-01

    Height growth and site index curves were constructed from stem analyses of mature western white pine (Pinus monticola Dougl. ex D. Don) growing in high-elevation forests of the Cascade Range in the Mount Hood and Gifford Pinchot National Forests of Oregon and Washington, respectively. Alternate systems using reference ages for site index of 50 and...

  5. Isolation and spectral characterization of thermally generated multi-Z-isomers of lycopene and the theoretically preferred pathway to di-Z-isomers.

    PubMed

    Honda, Masaki; Kudo, Tatsuya; Kuwa, Takahiro; Higashiura, Takuma; Fukaya, Tetsuya; Inoue, Yoshinori; Kitamura, Chitoshi; Takehara, Munenori

    2017-02-01

    Lycopene has a large number of geometric isomers caused by E/Z isomerization at arbitrary sites within the 11 conjugated double bonds, offering varying characteristics related to features such as antioxidant capacity and bioavailability. However, the geometric structures of only a few lycopene Z-isomers have been thoroughly identified from natural sources. In this study, seven multi-Z-isomers of lycopene, (9Z,13'Z)-, (5Z,13Z,9'Z)-, (9Z,9'Z)-, (5Z,13'Z)-, (5Z,9'Z)-, (5Z,9Z,5'Z)-, and (5Z,9Z)-lycopene, were obtained from tomato samples by thermal isomerization, and then isolated by elaborate chromatography, and fully assigned using proton nuclear magnetic resonance. Moreover, the theoretically preferred pathway from (all-E)-lycopene to di-Z-isomers was examined with a computational approach using a Gaussian program. Fine-tuning of the HPLC separation conditions led to the discovery of novel multi-Z-isomers, and whose formation was supported by advanced theoretical calculations.

  6. New method for calculating the coupling coefficient in graded index optical fibers

    NASA Astrophysics Data System (ADS)

    Savović, Svetislav; Djordjevich, Alexandar

    2018-05-01

    A simple method is proposed for determining the mode coupling coefficient D in graded index multimode optical fibers. It only requires observation of the output modal power distribution P(m, z) for one fiber length z as the Gaussian launching modal power distribution changes, with the Gaussian input light distribution centered along the graded index optical fiber axis (θ0 = 0) without radial offset (r0 = 0). A similar method we previously proposed for calculating the coupling coefficient D in a step-index multimode optical fibers where the output angular power distributions P(θ, z) for one fiber length z with the Gaussian input light distribution launched centrally along the step-index optical fiber axis (θ0 = 0) is needed to be known.

  7. Methylation of subtelomeric repeat D4Z4 in peripheral blood leukocytes is associated with biochemical recurrence in localized prostate cancer patients.

    PubMed

    Han, Yuyan; Xu, Junfeng; Kim, Jeri; Wu, Xifeng; Gu, Jian

    2017-08-01

    Global DNA methylation may affect chromosome structure and genomic stability and is involved in carcinogenesis. In this study, we aimed to investigate whether methylation of pericentromeric repeat NBL2 and subtelomeric repeat D4Z4 in peripheral blood was associated with the aggressiveness of prostate cancer (PCa). We measured the methylation status of different CpG sites of NBL2 and D4Z4 in 795 PCa patients and compared their methylation levels among patients with different Gleason Score at diagnosis. We then analyzed the association of the NBL2 and D4Z4 methylation with the risk of biochemical recurrence (BCR) in patients receiving radical prostatectomy or radiotherapy using a multivariate Cox proportional hazards model. In addition, we used the Kaplan-Meier survival function and log-rank tests to assess BCR-free survival associated with D4Z4 methylation. There was no significant difference in methylation level of NBL2 and D4Z4 between clinically defined aggressive and non-aggressive PCa at diagnosis. However, the methylation of D4Z4 was associated with BCR, while the methylation of NBL2 was not. In tertile analysis, patients in the highest tertile of D4Z4 methylation had an increased risk of BCR (HR = 2.17, 95% CI 1.36-3.48) compared to patients in the lower tertiles after adjustment of age, body mass index, smoking status, pack year, D'Amico risk groups and treatments. Among the four CpG sites in this region, the association was mostly attributable to the methylation of the second CpG site of D4Z4. These data suggest that higher methylation in D4Z4 was associated with worse prognosis of localized PCa patients. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  8. [E75, R78 and D82 of Escherichia coli FtsZ are key residues for FtsZ cellular self-assembly and FtsZ-MreB interaction].

    PubMed

    Huo, Yujia; Lu, Qiaonan; Zheng, Xiaowei; Ma, Yuanfang; Lu, Feng

    2016-02-04

    To explore effects of FtsZ mutants FtsZ(E75A), FtsZ(R78G) and FtsZ(D82A) on FtsZ self-assembly and interaction of FtsZ with MreB in Escherichia coli strains. METHODS) We constructed FtsZ and its mutant's plasmids by molecular clone and site-directed mutagenesis methods, and purified targeted proteins by affinity chromatography. QN6(ftsZ::yfp-cat), QN7(tsZ::yfp-cat), QN8(ftsZ(R78G)::yfp-cat) and QN9 (ftsZ(D82A):.:yfp-cat) strains were constructed by linear DNA homologous recombination. We observed cellular localization pattern of FtsZ and its mutants in E. coli by living cell imaging experiments, examined interaction of FtsZ/FtsZ*-FtsZ* and FtsZ/FtsZ*-MreB by Coimmunoprecipitation and bacteria two hybrid, and analyzed assembly characteristics of FtsZ mutants by Light scattering. RESULTS) The Yfp-labeled FtsZ(E75A), FtsZ(R78G) and FtsZ(D82A) mutant proteins failed to assemble into functional Z-ring structure and localize correctly in E. coli strains. Interaction of FtsZ with its mutants, or FtsZ*-FtsZ* and FtsZ*-MreB interaction were weakened or completely disappeared. In addition, in vitro experiments show that E75A, R78G and D82A mutations decreased the polymerization efficiency of FtsZ monomer. FtsZ E75, R78 and D82 are critical amino acids in the assembly, function of FtsZ protein and FtsZ-MreB interaction in E. coli strains.

  9. Index formulas for higher order Loewner vector fields

    NASA Astrophysics Data System (ADS)

    Broad, Steven

    Let ∂ be the Cauchy-Riemann operator and f be a C real-valued function in a neighborhood of 0 in R in which ∂z¯nf≠0 for all z≠0. In such cases, ∂z¯nf is known as a Loewner vector field due to its connection with Loewner's conjecture that the index of such a vector field is bounded above by n. The n=2 case of Loewner's conjecture implies Carathéodory's conjecture that any C-immersion of S into R must have at least two umbilics. Recent work of F. Xavier produced a formula for computing the index of Loewner vector fields when n=2 using data about the Hessian of f. In this paper, we extend this result and establish an index formula for ∂z¯nf for all n⩾2. Structurally, our index formula provides a defect term, which contains geometric data extracted from Hessian-like objects associated with higher order derivatives of f.

  10. Synthetic inhibitors of bacterial cell division targeting the GTP-binding site of FtsZ.

    PubMed

    Ruiz-Avila, Laura B; Huecas, Sonia; Artola, Marta; Vergoñós, Albert; Ramírez-Aportela, Erney; Cercenado, Emilia; Barasoain, Isabel; Vázquez-Villa, Henar; Martín-Fontecha, Mar; Chacón, Pablo; López-Rodríguez, María L; Andreu, José M

    2013-09-20

    Cell division protein FtsZ is the organizer of the cytokinetic Z-ring in most bacteria and a target for new antibiotics. FtsZ assembles with GTP into filaments that hydrolyze the nucleotide at the association interface between monomers and then disassemble. We have replaced FtsZ's GTP with non-nucleotide synthetic inhibitors of bacterial division. We searched for these small molecules among compounds from the literature, from virtual screening (VS), and from our in-house synthetic library (UCM), employing a fluorescence anisotropy primary assay. From these screens we have identified the polyhydroxy aromatic compound UCM05 and its simplified analogue UCM44 that specifically bind to Bacillus subtilis FtsZ monomers with micromolar affinities and perturb normal assembly, as examined with light scattering, polymer sedimentation, and negative stain electron microscopy. On the other hand, these ligands induce the cooperative assembly of nucleotide-devoid archaeal FtsZ into distinct well-ordered polymers, different from GTP-induced filaments. These FtsZ inhibitors impair localization of FtsZ into the Z-ring and inhibit bacterial cell division. The chlorinated analogue UCM53 inhibits the growth of clinical isolates of antibiotic-resistant Staphylococcus aureus and Enterococcus faecalis. We suggest that these interfacial inhibitors recapitulate binding and some assembly-inducing effects of GTP but impair the correct structural dynamics of FtsZ filaments and thus inhibit bacterial division, possibly by binding to a small fraction of the FtsZ molecules in a bacterial cell, which opens a new approach to FtsZ-based antibacterial drug discovery.

  11. Understanding the links between composition, polyhedral distortion, and luminescence properties in green-emitting β-Si 6–zAl zO zN 8–z:Eu 2+ phosphors

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Cozzan, Clayton; Laurita, Geneva; Gaultois, Michael W.

    Inorganic phosphor materials play a crucial role in the creation of white light from blue and near-UV solid-state light-emitting diodes. Understanding the intricacies of the phosphor structure is key for setting the stage for improved, more efficient functionality. Average structure and coordination environment analysis of the robust and efficient green-emitting phosphor, β-SiAlON:Eu 2+ (β-Si 6–zAl zO zN 8–zEu 0.009), is combined here with a range of property measurements to elucidate the role of Al content ( z) in luminescence properties, including the red shift of emission and the thermal quenching of luminescence as a function of increasing Al content z.more » Average structure techniques reveal changes in polyhedral distortion with increasing z for the 9-coordinate Eu site in β-SiAlON:Eu 2+. X-ray absorption near edge structure (XANES) is used to confirm that the majority of the activator Eu is in the Eu 2+ state, exhibiting the symmetry-allowed and efficient 4f 75d 0 → 4f 65d 1 transitions. As a result, room temperature and temperature-dependent luminescence indicate a curious increase in thermal stability with increasing z over a small range due to an increasing barrier for thermal ionization, which is correlated to an increase in the quantum yield of the phosphor.« less

  12. Understanding the links between composition, polyhedral distortion, and luminescence properties in green-emitting β-Si 6–zAl zO zN 8–z:Eu 2+ phosphors

    DOE PAGES

    Cozzan, Clayton; Laurita, Geneva; Gaultois, Michael W.; ...

    2017-09-21

    Inorganic phosphor materials play a crucial role in the creation of white light from blue and near-UV solid-state light-emitting diodes. Understanding the intricacies of the phosphor structure is key for setting the stage for improved, more efficient functionality. Average structure and coordination environment analysis of the robust and efficient green-emitting phosphor, β-SiAlON:Eu 2+ (β-Si 6–zAl zO zN 8–zEu 0.009), is combined here with a range of property measurements to elucidate the role of Al content ( z) in luminescence properties, including the red shift of emission and the thermal quenching of luminescence as a function of increasing Al content z.more » Average structure techniques reveal changes in polyhedral distortion with increasing z for the 9-coordinate Eu site in β-SiAlON:Eu 2+. X-ray absorption near edge structure (XANES) is used to confirm that the majority of the activator Eu is in the Eu 2+ state, exhibiting the symmetry-allowed and efficient 4f 75d 0 → 4f 65d 1 transitions. As a result, room temperature and temperature-dependent luminescence indicate a curious increase in thermal stability with increasing z over a small range due to an increasing barrier for thermal ionization, which is correlated to an increase in the quantum yield of the phosphor.« less

  13. zFP538, a yellow fluorescent protein from coral, belongs to the DsRed subfamily of GFP-like proteins but possesses the unexpected site of fragmentation.

    PubMed

    Zagranichny, Vasily E; Rudenko, Natalia V; Gorokhovatsky, Andrey Yu; Zakharov, Mikhail V; Shenkarev, Zakhar O; Balashova, Tamara A; Arseniev, Alexander S

    2004-04-27

    The yellow fluorescent protein (zFP538) from coral Zoanthus sp. belongs to a family of green fluorescent protein (GFP). Absorption and emission spectra of zFP538 show an intermediate bathochromic shift as compared with a number of recently cloned GFP-like red fluorescent and nonfluorescent chromoproteins of the DsRed subfamily. Here we report that the zFP538 chromophore is very close, if not identical, in chemical structure to that of DsRed. To gain insight into the mechanism of zFP538 fluorescence and chromophore structure and chemistry, we studied three chromophore-containing peptides isolated from enzymatic digests of zFP538. Like GFP and DsRed chromophores, these contain a p-hydroxybenzylideneimidazolinone moiety formed by Lys-66, Tyr-67, and Gly-68 of zFP538. One of the peptides studied, the hexapeptide FKYGDR derivative, is a proteolysis product of the zFP538 full-length polypeptide containing a GFP-type chromophore already formed and arrested at an earlier stage of maturation. The two other peptides are the derivatives of the pentapeptide KYGDR resulted from the protein in which the chromophore maturation process had been completed. One of these has an oxogroup at Lys-66 C(alpha) and is a hydrolysis product of another one, with the imino group at Lys-66 C(alpha). The N-unsubstituted imino moiety of the latter is generated by spontaneous polypeptide chain fragmentation at a very unexpected site, the former peptide bond between Phe-65 C' and Lys-66 N(alpha). Also observed in the entire protein under mild denaturing conditions, this fragmentation is likely the feature of native zFP538 chromophore that distinguishes it chemically from the DsRed chromophore.

  14. Site Index Curves for Direct-Seeded Loblolly and Longleaf Pines in Louisiana

    Treesearch

    Quang V. Cao; V. Clark Baldwin; Richard E. Lohrey

    1995-01-01

    Site index equations were developed for direct-seeded loblollypine (Pinus taeda L.) and longleaf pine (Pinus palustris Mill.) based on data from 148 and 75 permanent plots, respectively. These plots varied from 0.053 to 0.119 ac in size, and were established in broadcast, row, and spot seeded stands throughout Louisiana. The Bailey and Clutter (1974) model was...

  15. Biological growth functions describe published site index curves for Lake States timber species.

    Treesearch

    Allen L. Lundgren; William A. Dolid

    1970-01-01

    Two biological growth functions, an exponential-monomolecular function and a simple monomolecular function, have been fit to published site index curves for 11 Lake States tree species: red, jack, and white pine, balsam fir, white and black spruce, tamarack, white-cedar, aspen, red oak, and paper birch. Both functions closely fit all published curves except those for...

  16. Relation of biomass to basal area and site index on an Appalachian watershed

    Treesearch

    Harry V., Jr. Wiant; Robert Knight; John E. Baumgras

    1984-01-01

    The biomass of 50-year-old cove hardwood and upland oak stands on an Appalachian watershed was more strongly related to basal area than to site index. Equations are presented for predicting the green and dry weight per acre of biomass components with basal area as the independent variable.

  17. Zuotin, a putative Z-DNA binding protein in Saccharomyces cerevisiae

    NASA Technical Reports Server (NTRS)

    Zhang, S.; Lockshin, C.; Herbert, A.; Winter, E.; Rich, A.

    1992-01-01

    A putative Z-DNA binding protein, named zuotin, was purified from a yeast nuclear extract by means of a Z-DNA binding assay using [32P]poly(dG-m5dC) and [32P]oligo(dG-Br5dC)22 in the presence of B-DNA competitor. Poly(dG-Br5dC) in the Z-form competed well for the binding of a zuotin containing fraction, but salmon sperm DNA, poly(dG-dC) and poly(dA-dT) were not effective. Negatively supercoiled plasmid pUC19 did not compete, whereas an otherwise identical plasmid pUC19(CG), which contained a (dG-dC)7 segment in the Z-form was an excellent competitor. A Southwestern blot using [32P]poly(dG-m5dC) as a probe in the presence of MgCl2 identified a protein having a molecular weight of 51 kDa. The 51 kDa zuotin was partially sequenced at the N-terminal and the gene, ZUO1, was cloned, sequenced and expressed in Escherichia coli; the expressed zuotin showed similar Z-DNA binding activity, but with lower affinity than zuotin that had been partially purified from yeast. Zuotin was deduced to have a number of potential phosphorylation sites including two CDC28 (homologous to the human and Schizosaccharomyces pombe cdc2) phosphorylation sites. The hexapeptide motif KYHPDK was found in zuotin as well as in several yeast proteins, DnaJ of E.coli, csp29 and csp32 proteins of Drosophila and the small t and large T antigens of the polyoma virus. A 60 amino acid segment of zuotin has similarity to several histone H1 sequences. Disruption of ZUO1 in yeast resulted in a slow growth phenotype.

  18. [The gastric mucosal adhesiveness of Z-103 in rats with chronic ulcer].

    PubMed

    Seiki, M; Aita, H; Mera, Y; Arai, K; Toyama, S; Furuta, S; Morita, H; Hori, Y; Yoneta, T; Tagashira, E

    1992-04-01

    The gastric mucosal adhesiveness of Z-103 in rats with acetic acid ulcer was studied macroscopically, histologically, and biochemically. From macroscopical observations, when Z-103 was orally administered to an acetic acid ulcer model, there was adhesion of Zn to the normal mucosa as well as the ulcerous site under both the fasting condition and after feeding. It was also proven that the strength and duration of adhesiveness were increased dose-dependently under fasting conditions. In addition, histological localization of Zn was noted from the covering epithelial cell layer to the gastric lamina propria mucosae in the normal tissue and in the most superficial ulcerous layer and the granulous layer of the ulcerous site. Measurement of the gastric tissue Zn content after oral administration of 100 mg/kg of Zn showed that the Zn content was significantly increased for 6 hr at the normal site and for 24 hr at the ulcerous site. On the other hand, although ZnSO4 and ZnSO4+carnosine combination macroscopically produced generally the same level of adhesiveness as Z-103, when the gastric tissue Zn content for Z-103 and ZnSO4 were compared, the Zn content of ZnSO4 was lower than that for Z-103 at both the normal and ulcerous site. In summary, Z-103 shows a long-term adhesive and permeable action on the gastric mucosa in acetic acid ulcer rats, and it has a comparable high affinity at the ulcerous site.

  19. Nuclear facility decommissioning and site remedial actions: A selected bibliography, Vol. 18. Part 2. Indexes

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    NONE

    1997-09-01

    This bibliography contains 3638 citations with abstracts of documents relevant to environmental restoration, nuclear facility decontamination and decommissioning (D&D), uranium mill tailings management, and site remedial actions. This report is the eighteenth in a series of bibliographies prepared annually for the U.S. Department of Energy (DOE) Office of Environmental Restoration. Citations to foreign and domestic literature of all types - technical reports, progress reports, journal articles, symposia proceedings, theses, books, patents, legislation, and research project descriptions - have been included in Part 1 of the report. The bibliography contains scientific, technical, financial, and regulatory information that pertains to DOE environmentalmore » restoration programs. The citations are separated by topic into 16 sections, including (1) DOE Environmental Restoration Program; (2) DOE D&D Program; (3) Nuclear Facilities Decommissioning; (4) DOE Formerly Utilized Sites Remedial Action Programs; (5) NORM-Contaminated Site Restoration; (6) DOE Uranium Mill Tailings Remedial Action Project; (7) Uranium Mill Tailings Management; (8) DOE Site-Wide Remedial Actions; (9) DOE Onsite Remedial Action Projects; (10) Contaminated Site Remedial Actions; (11) DOE Underground Storage Tank Remediation; (12) DOE Technology Development, Demonstration, and Evaluations; (13) Soil Remediation; (14) Groundwater Remediation; (15) Environmental Measurements, Analysis, and Decision-Making; and (16) Environmental Management Issues. Within the 16 sections, the citations are sorted by geographic location. If a geographic location is not specified, the citations are sorted according to the document title. In Part 2 of the report, indexes are provided for author, author affiliation, selected title phrase, selected title word, publication description, geographic location, and keyword.« less

  20. MinD directly interacting with FtsZ at the H10 helix suggests a model for robust activation of MinC to destabilize FtsZ polymers.

    PubMed

    Taviti, Ashoka Chary; Beuria, Tushar Kant

    2017-09-07

    Cell division in bacteria is a highly controlled and regulated process. FtsZ, a bacterial cytoskeletal protein, forms a ring-like structure known as the Z-ring and recruits more than a dozen other cell division proteins. The Min system oscillates between the poles and inhibits the Z-ring formation at the poles by perturbing FtsZ assembly. This leads to an increase in the FtsZ concentration at the mid-cell and helps in Z-ring positioning. MinC, the effector protein, interferes with Z-ring formation through two different mechanisms mediated by its two domains with the help of MinD. However, the mechanism by which MinD triggers MinC activity is not yet known. We showed that MinD directly interacts with FtsZ with an affinity stronger than the reported MinC-FtsZ interaction. We determined the MinD-binding site of FtsZ using computational, mutational and biochemical analyses. Our study showed that MinD binds to the H10 helix of FtsZ. Single-point mutations at the charged residues in the H10 helix resulted in a decrease in the FtsZ affinity towards MinD. Based on our findings, we propose a novel model for MinCD-FtsZ interaction, where MinD through its direct interaction with FtsZ would trigger MinC activity to inhibit FtsZ functions. © 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

  1. Intercomparison of clumping index estimates from POLDER, MODIS, and MISR satellite data over reference sites

    NASA Astrophysics Data System (ADS)

    Pisek, Jan; Govind, Ajit; Arndt, Stefan K.; Hocking, Darren; Wardlaw, Timothy J.; Fang, Hongliang; Matteucci, Giorgio; Longdoz, Bernard

    2015-03-01

    Clumping index is the measure of foliage grouping relative to a random distribution of leaves in space. It is a key structural parameter of plant canopies that influences canopy radiation regimes and controls canopy photosynthesis and other land-atmosphere interactions. The Normalized Difference between Hotspot and Darkspot (NDHD) index has been previously used to retrieve global clumping index maps from POLarization and Directionality of the Earth's Reflectances (POLDER) data at ˜6 km resolution and the Bidirectional Reflectance Distribution Function (BRDF) product from Moderate Resolution Imaging Spectroradiometer (MODIS) at 500 m resolution. Most recently the algorithm was also applied with Multi-angle Imaging SpectroRadiometer (MISR) data at 275 m resolution over selected areas. In this study for the first time we characterized and compared the three products over a set of sites representing diverse biomes and different canopy structures. The products were also directly validated with both in-situ vertical profiles and available seasonal trajectories of clumping index over several sites. We demonstrated that the vertical distribution of foliage and especially the effect of understory need to be taken into account while validating foliage clumping products from remote sensing products with values measured in the field. Satellite measurements responded to the structural effects near the top of canopies, while ground measurements may be biased by the lower vegetation layers. Additionally, caution should be taken regarding the misclassification in land cover maps as their errors can propagate into the foliage clumping maps. Our results indicate that MODIS data and MISR data, with 275 m in particular, can provide good quality clumping index estimates at spatial scales pertinent for modeling local carbon and energy fluxes.

  2. Longleaf pine cone production in relation to site index, stand age, and stand density

    Treesearch

    Thomas Croker

    1973-01-01

    Few cones were produced in stands less than 30 years old. In stands 30 to 70 years in age, production seemed best at timber densities of about 30 square feet of basal area per acre, and tended to increase with increasing site index.

  3. Remediation System Evaluation, A-Z Automotive in West Milford, New Jersey

    EPA Pesticide Factsheets

    The A-Z Automotive site is a former gasoline retail outlet and automobile service station located on Union Valley Road between St. George Street and Lou Ann Boulevard in West Milford, Passaic County, New Jersey.

  4. LiDAR-derived site index in the U.S. Pacihic Northwest--challenges and opportunities

    Treesearch

    Demetrios Gatziolis

    2007-01-01

    Site Index (SI), a key inventory parameter, is traditionally estimated by using costly and laborious field assessments of tree height and age. The increasing availability of reliable information on stand initiation timing and extent of planted, even-aged stands maintained in digital databases suggests that information on the height of dominant trees suffices for...

  5. Accuracy of eastern white pine site index models developed in the Southern Appalachian Mountains

    Treesearch

    W. Henry McNab

    2002-01-01

    Three older, anamorphic eastern white pine (Pinus sfrobus L.) site index models developed in the southern Appalachian Mountains between 1932 and 1962 were evaluated for accuracy and compared with a newer, polymorphic model developed in 1971. Accuracies of the older models were tested with data used in development of the 1971 model, in which actual...

  6. Z-DOC: a serious game for Z-plasty procedure training.

    PubMed

    Shewaga, Robert; Knox, Aaron; Ng, Gary; Kapralos, Bill; Dubrowski, Adam

    2013-01-01

    We present Z-DOC, a (prototype) serious game for training plastic surgery residents the steps comprising the Z-plasty surgical procedure. Z-DOC employs touch-based interactions and promotes competition amongst multiple players/users thus promote engagement and motivation. It is hypothesized that by learning the Z-plasty procedure in an interactive, engaging, and fun gaming environment, trainees will have a much better understanding of the procedure than by traditional learning modalities.

  7. LocZ Is a New Cell Division Protein Involved in Proper Septum Placement in Streptococcus pneumoniae

    PubMed Central

    Holečková, Nela; Molle, Virginie; Buriánková, Karolína; Benada, Oldřich; Kofroňová, Olga; Ulrych, Aleš; Branny, Pavel

    2014-01-01

    ABSTRACT How bacteria control proper septum placement at midcell, to guarantee the generation of identical daughter cells, is still largely unknown. Although different systems involved in the selection of the division site have been described in selected species, these do not appear to be widely conserved. Here, we report that LocZ (Spr0334), a newly identified cell division protein, is involved in proper septum placement in Streptococcus pneumoniae. We show that locZ is not essential but that its deletion results in cell division defects and shape deformation, causing cells to divide asymmetrically and generate unequally sized, occasionally anucleated, daughter cells. LocZ has a unique localization profile. It arrives early at midcell, before FtsZ and FtsA, and leaves the septum early, apparently moving along with the equatorial rings that mark the future division sites. Consistently, cells lacking LocZ also show misplacement of the Z-ring, suggesting that it could act as a positive regulator to determine septum placement. LocZ was identified as a substrate of the Ser/Thr protein kinase StkP, which regulates cell division in S. pneumoniae. Interestingly, homologues of LocZ are found only in streptococci, lactococci, and enterococci, indicating that this close phylogenetically related group of bacteria evolved a specific solution to spatially regulate cell division. PMID:25550321

  8. Evaluation of Two Eastern White Pine Site Index Equations at Biltmore Estate, North Carolina

    Treesearch

    W. Henry McNab; Bernard R. Parresol; Brian A. Ritter

    2000-01-01

    The accuracy of two white pine (Pinus strobus L.) polymorphic site index equations was compared with field data from three plots in a loo-year-old stand at Biltmore Estate, Asheville, NC. One equation was developed from New Hampshire data and the other from Southern Appalachian data. Tree height has been measured periodically on those plots between...

  9. Differences in body mass index z-scores and weight status in a Dutch pediatric psychiatric population with and without use of second-generation antipsychotics.

    PubMed

    de Hoogd, Sjoerd; Overbeek, Wieske A; Heerdink, Eibert R; Correll, Christoph U; de Graeff, Elisabeth R; Staal, Wouter G

    2012-04-01

    Weight gain and metabolic adverse effects of second-generation antipsychotics (SGAs) have become a major concern, particularly in youth. However, the specific contribution of SGAs versus other medications or the underlying illness is unclear. In a chart review study of psychiatric outpatients aged ≤ 18 years treated with SGAs and psychiatric controls without lifetime SGA, use body mass index (BMI) z-scores between patients and controls were compared in the entire sample, patients without co-medications, diagnostic subgroups, and age subgroups. In patients with follow-up data, weight z-score change was calculated. Altogether, 592 Caucasian patients aged 4-18 (mean: 10.0) years with a psychiatric diagnosis were included. BMI z-scores in 96 youth treated with SGAs for 9.0 ± 6.1 months were significantly higher than in 496 patients without lifetime SGA use (0.81 ± 1.1 vs. 0.05 ± 1.2; p<0.0001). BMI z-score differences remained significant in all age groups <16 years old. In sub-analyses, results remained the same after eliminating patients on any co-medication (0.82 ± 1.2 vs. 0.23 ± 1.2; p<0.0001) and in patients with (0.75 ± 1.2 vs. 0.17 ± 1.1, p<0.0001) or without autism spectrum disorders (1.1 ± 1.0 vs. -0.02 ± 1.2, p<0.0001). Significantly more SGA-treated youth were obese (27.1% vs. 9.5%, odds ratio [OR]: 3.55, 95% confidence interval [CI]:2.07-6.08) or overweight (21.9% vs. 8.3%, OR: 3.11, 95%CI: 1.75-5.52). In 24 patients (92.3% antipsychotic-naïve) with 6.6 months follow-up, weight z-score increased significantly from -0.17 ± 1.5 to 0.25 ± 1.4 (p<0.0001) with 12.5% transitioning to overweight or obese status. These data show robust and significant differences in sex- and age-adjusted body weight and weight status in young pediatric Caucasian samples with and without use of SGAs independent of Diagnostic and Statistical Manual of Mental Disorders, 4th edition, Text Revision (DSM-IV-TR) (American Psychiatric Association 2000 ) diagnosis and

  10. Reorganization of Damaged Chromatin by the Exchange of Histone Variant H2A.Z-2

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nishibuchi, Ikuno; Department of Radiation Oncology, Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima; Department of Radiation Oncology, Hiroshima Prefectural Hospital, Hiroshima

    2014-07-15

    Purpose: The reorganization of damaged chromatin plays an important role in the regulation of the DNA damage response. A recent study revealed the presence of 2 vertebrate H2A.Z isoforms, H2A.Z-1 and H2A.Z-2. However, the roles of the vertebrate H2A.Z isoforms are still unclear. Thus, in this study we examined the roles of the vertebrate H2A.Z isoforms in chromatin reorganization after the induction of DNA double-strand breaks (DSBs). Methods and Materials: To examine the dynamics of H2A.Z isoforms at damaged sites, we constructed GM0637 cells stably expressing each of the green fluorescent protein (GFP)-labeled H2A.Z isoforms, and performed fluorescence recovery after photobleaching (FRAP)more » analysis and inverted FRAP analysis in combination with microirradiation. Immunofluorescence staining using an anti-RAD51 antibody was performed to study the kinetics of RAD51 foci formation after 2-Gy irradiation of wild-type (WT), H2A.Z-1- and H2A.Z-2-deficient DT40 cells. Colony-forming assays were also performed to compare the survival rates of WT, H2A.Z-1-, and H2A.Z-2-deficient DT40 cells with control, and H2A.Z-1- and H2A.Z-2-depleted U2OS cells after irradiation. Results: FRAP analysis revealed that H2A.Z-2 was incorporated into damaged chromatin just after the induction of DSBs, whereas H2A.Z-1 remained essentially unchanged. Inverted FRAP analysis showed that H2A.Z-2 was released from damaged chromatin. These findings indicated that H2A.Z-2 was exchanged at DSB sites immediately after the induction of DSBs. RAD51 focus formation after ionizing irradiation was disturbed in H2A.Z-2-deficient DT40 cells but not in H2A.Z-1-deficient cells. The survival rate of H2A.Z-2-deficient cells after irradiation was lower than those of WT and H2A.Z-1- DT40 cells. Similar to DT40 cells, H2A.Z-2-depleted U2OS cells were also radiation-sensitive compared to control and H2A.Z-1-depleted cells. Conclusions: We found that vertebrate H2A.Z-2 is involved in the regulation of

  11. (3Z,6Z,9Z,12Z,15Z)-Pentacosapentaene and (Z) -11-Hexadecenyl Acetate: sex attractant blend for Dioryctria amatella (Lepidoptera: Pyralidae).

    Treesearch

    Daniel Miller; Jocelyn Millar; Alex Mangini; Christopher Crowe; Gary Grant

    2010-01-01

    In 2006-2008, we tested (3Z,6Z,9Z,12Z,15Z)-pentacosapentaene (pentaene) with the pheromone components (Z)-11-hexadecenyl acetate (Z11-16:Ac) and (Z)-9-tetradecenyl acetate (Z9-14:Ac), as sex attractants for four sympatric species of coneworms, Dioryctria Zeller (Lepidoptera: Pyralidae) in slash (Pinus elliottii Engelm.) and...

  12. Uninvolved Maternal Feeding Style Moderates the Association of Emotional Overeating to Preschoolers' Body Mass Index z-Scores.

    PubMed

    Hankey, Maren; Williams, Natalie A; Dev, Dipti

    2016-09-01

    To examine the relation between preschoolers' eating behaviors and body mass index (BMI) z-scores (BMIz) and the moderating role of permissive parent feeding styles in these associations. Cross-sectional study involving mothers' report of food-related parenting styles and child eating behaviors. Small city in southern Mississippi. Mother-preschooler dyads (n = 104). Child body BMIz. Moderated multiple regression. An uninvolved feeding style moderated the relationship between emotional eating and BMIz such that children with higher emotional overeating scores had higher a BMIz in the presence of an uninvolved feeding style (B = 2.16; P = .01). An uninvolved feeding style may be a risk factor for higher BMIz in preschoolers who tend to overeat to cope with negative emotions. For other children in this population, self-regulatory aspects of eating may be more important than mothers' feeding style in the maintenance of healthy weight. Copyright © 2016 Society for Nutrition Education and Behavior. Published by Elsevier Inc. All rights reserved.

  13. Plumbagin inhibits cytokinesis in Bacillus subtilis by inhibiting FtsZ assembly--a mechanistic study of its antibacterial activity.

    PubMed

    Bhattacharya, Anusri; Jindal, Bhavya; Singh, Parminder; Datta, Anindya; Panda, Dulal

    2013-09-01

    The assembly of FtsZ plays a central role in construction of the cytokinetic Z-ring that orchestrates bacterial cell division. A naturally occurring naphthoquinone, plumbagin, is known to exhibit antibacterial properties against several types of bacteria. In this study, plumbagin was found to perturb formation of the Z-ring in Bacillus subtilis 168 cells and to cause elongation of these cells without an apparent effect on nucleoid segregation, indicating that it may inhibit FtsZ assembly. Furthermore, it bound to purified B. subtilis FtsZ (BsFtsZ) with a dissociation constant of 20.7 ± 5.6 μM, and inhibited the assembly and GTPase activity of BsFtsZ in vitro. Interestingly, plumbagin did not inhibit either the assembly or GTPase activity of Escherichia coli FtsZ (EcFtsZ) in vitro. Using docking analysis, a putative plumbagin-binding site on BsFtsZ was identified, and the analysis indicated that hydrophobic interactions and hydrogen bonds predominate. Based on the in silico analysis, two variants of BsFtsZ, namely D199A and V307R, were constructed to explore the binding interaction of plumbagin and BsFtsZ. The effects of plumbagin on the assembly and GTPase activity of the variant BsFtsZ proteins in vitro indicated that the residues D199 and V307 may be involved in the binding of plumbagin to BsFtsZ. The results suggest that plumbagin inhibits bacterial proliferation by inhibiting the assembly of FtsZ, and provide insight into the binding site of plumbagin on BsFtsZ, which may help in the design of potent FtsZ-targeted antibacterial agents. © 2013 FEBS.

  14. Prediction of Mortality with A Body Shape Index in Young Asians: Comparison with Body Mass Index and Waist Circumference.

    PubMed

    Lee, Da-Young; Lee, Mi-Yeon; Sung, Ki-Chul

    2018-06-01

    This paper investigated the impact of A Body Shape Index (ABSI) on the risk of all-cause mortality compared with the impact of waist circumference (WC) and body mass index (BMI). This paper reviewed data of 213,569 Korean adults who participated in health checkups between 2002 and 2012 at Kangbuk Samsung Hospital in Seoul, Korea. A multivariate Cox proportional hazard analysis was performed on the BMI, WC, and ABSI z score continuous variables as well as quintiles. During 1,168,668.7 person-years, 1,107 deaths occurred. As continuous variables, a significant positive relationship with the risk of all-cause death was found only in ABSI z scores after adjustment for age, sex, current smoking, alcohol consumption, regular exercise, presence of diabetes or hypertension, and history of cardiovascular diseases. In Cox analysis of quintiles, quintile 5 of the ABSI z score showed significantly increased hazard ratios (HRs) for mortality risk (HR [95% CI] was 1.32 [1.05-1.66]), whereas the risk for all-cause mortality, on the other hand, decreased in quintiles 3 through 5 of BMI and WC compared with their first quintiles after adjusting for several confounders. This study showed that the predictive value of ABSI for mortality risk was strong for a sample of young Asian participants and that its usefulness was better than BMI or WC. © 2018 The Obesity Society.

  15. Phase Diagram of K x Fe 2 - y Se 2 - z S z and the Suppression of its Superconducting State by an Fe 2 - Se / S Tetrahedron Distortion

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lei, Hechang; Abeykoon, Milinda; Bozin, Emil S.

    2011-09-01

    We report structurally tuned superconductivity in a K x Fe 2 - y Se 2 - z S z ( 0 ≤ z ≤ 2 ) phase diagram. Superconducting T c is suppressed as S is incorporated into the lattice, eventually vanishing at 80% of S. The magnetic and conductivity properties can be related to stoichiometry on a poorly occupied Fe1 site and the local environment of a nearly fully occupied Fe2 site. The decreasing T c coincides with the increasing Fe1 occupancy and the overall increase in Fe stoichiometry from z = 0 to z = 2 . Ourmore » results indicate that the irregularity of the Fe 2 - Se / S tetrahedron is an important controlling parameter that can be used to tune the ground state in the new superconductor family.« less

  16. A survey of the current status of web-based databases indexing Iranian journals.

    PubMed

    Merat, Shahin; Khatibzadeh, Shahab; Mesgarpour, Bita; Malekzadeh, Reza

    2009-05-01

    The scientific output of Iran is increasing rapidly during the recent years. Unfortunately, most papers are published in journals which are not indexed by popular indexing systems and many of them are in Persian without English translation. This makes the results of Iranian scientific research unavailable to other researchers, including Iranians. The aim of this study was to evaluate the quality of current web-based databases indexing scientific articles published in Iran. We identified web-based databases which indexed scientific journals published in Iran using popular search engines. The sites were then subjected to a series of tests to evaluate their coverage, search capabilities, stability, accuracy of information, consistency, accessibility, ease of use, and other features. Results were compared with each other to identify strengths and shortcomings of each site. Five web sites were indentified. None had a complete coverage on scientific Iranian journals. The search capabilities were less than optimal in most sites. English translations of research titles, author names, keywords, and abstracts of Persian-language articles did not follow standards. Some sites did not cover abstracts. Numerous typing errors make searches ineffective and citation indexing unreliable. None of the currently available indexing sites are capable of presenting Iranian research to the international scientific community. The government should intervene by enforcing policies designed to facilitate indexing through a systematic approach. The policies should address Iranian journals, authors, and indexing sites. Iranian journals should be required to provide their indexing data, including references, electronically; authors should provide correct indexing information to journals; and indexing sites should improve their software to meet standards set by the government.

  17. Improved Body Mass Index Measures Following a Middle School-Based Obesity Intervention--The MATCH Program

    ERIC Educational Resources Information Center

    Lazorick, Suzanne; Fang, Xiangming; Hardison, George T.; Crawford, Yancey

    2015-01-01

    Background: Motivating Adolescents with Technology to CHOOSE Health™ (MATCH) is an educational and behavioral intervention in seventh grade. Methods: Teachers in 2 schools delivered the MATCH curriculum, with 1 control school. Using a quasi-experimental design, outcome measures included lessons completed, body mass index (BMI), BMI z-score (zBMI),…

  18. Engelmann Spruce Site Index Models: A Comparison of Model Functions and Parameterizations

    PubMed Central

    Nigh, Gordon

    2015-01-01

    Engelmann spruce (Picea engelmannii Parry ex Engelm.) is a high-elevation species found in western Canada and western USA. As this species becomes increasingly targeted for harvesting, better height growth information is required for good management of this species. This project was initiated to fill this need. The objective of the project was threefold: develop a site index model for Engelmann spruce; compare the fits and modelling and application issues between three model formulations and four parameterizations; and more closely examine the grounded-Generalized Algebraic Difference Approach (g-GADA) model parameterization. The model fitting data consisted of 84 stem analyzed Engelmann spruce site trees sampled across the Engelmann Spruce – Subalpine Fir biogeoclimatic zone. The fitted models were based on the Chapman-Richards function, a modified Hossfeld IV function, and the Schumacher function. The model parameterizations that were tested are indicator variables, mixed-effects, GADA, and g-GADA. Model evaluation was based on the finite-sample corrected version of Akaike’s Information Criteria and the estimated variance. Model parameterization had more of an influence on the fit than did model formulation, with the indicator variable method providing the best fit, followed by the mixed-effects modelling (9% increase in the variance for the Chapman-Richards and Schumacher formulations over the indicator variable parameterization), g-GADA (optimal approach) (335% increase in the variance), and the GADA/g-GADA (with the GADA parameterization) (346% increase in the variance). Factors related to the application of the model must be considered when selecting the model for use as the best fitting methods have the most barriers in their application in terms of data and software requirements. PMID:25853472

  19. A Bactericidal Guanidinomethyl Biaryl That Alters the Dynamics of Bacterial FtsZ Polymerization

    PubMed Central

    Kaul, Malvika; Parhi, Ajit K.; Zhang, Yongzheng; LaVoie, Edmond J.; Tuske, Steve; Arnold, Eddy; Kerrigan, John E.; Pilch, Daniel S.

    2014-01-01

    The prevalence of multidrug resistance among clinically significant bacterial pathogens underscores a critical need for the development of new classes of antibiotics with novel mechanisms of action. Here we describe the synthesis and evaluation of a guanidinomethyl biaryl compound {1-((4′-(tert-butyl)-[1,1′-biphenyl]-3-yl)methyl)guanidine} that targets the bacterial cell division protein FtsZ. In vitro studies with various bacterial FtsZ proteins reveal that the compound alters the dynamics of FtsZ self-polymerization via a stimulatory mechanism, while minimally impacting the polymerization of tubulin, the closest mammalian homologue of FtsZ. The FtsZ binding site of the compound is identified through a combination of computational and mutational approaches. The compound exhibits a broad spectrum of bactericidal activity, including activity against the multidrug-resistant pathogens methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant Enterococcus (VRE), while also exhibiting a minimal potential to induce resistance. Taken together, our results highlight the compound as a promising new FtsZ-targeting bactericidal agent. PMID:23050700

  20. Discovery of an Inhibitor of Z-Alpha1 Antitrypsin Polymerization

    DOE PAGES

    Berthelier, Valerie; Harris, Jason Brett; Estenson, Kasey Noel; ...

    2015-05-11

    Polymerization of the Z variant alpha-1-antitrypsin (Z-α1AT) results in the most common and severe form of α1AT deficiency (α1ATD), a debilitating genetic disorder whose clinical manifestations range from asymptomatic to fatal liver and/or lung disease. As the altered conformation of Z-α1AT and its attendant aggregation are responsible for pathogenesis, the polymerization process per se has become a major target for the development of therapeutics. Based on the ability of Z-alpha 1AT to aggregate by recruiting the reactive center loop (RCL) of another Z-α1AT into its s4A cavity, we developed a high-throughput screening assay that uses a modified 6-mer peptide mimickingmore » the RCL to screen for inhibitors of Z-α1AT polymer growth. We used a subset of compounds from the Library of Pharmacologically Active Compounds (LOPAC) with molecular weights ranging from 300 to 700 Da, to evaluate the assay's capabilities. The inhibitor S-(4-nitrobenzyl)-6-thioguanosine was identified as a lead compound and its ability to prevent Z-α1AT polymerization confirmed by secondary assays. In order to further investigate the binding location of S-(4-nitrobenzyl)-6-thioguanosine, an in silico strategy was pursued and the intermediate alpha 1AT M* state modeled to allow molecular docking simulations and explore various potential binding sites. Docking results predict that S-(4-nitrobenzyl)-6-thioguanosine can bind at the s4A cavity and at the edge of beta-sheet A. The former binding site would directly block RCL insertion whereas the latter site would prevent beta-sheet A from expanding between s3A/s5A, and thus indirectly impede RCL insertion. Our investigations have revealed a novel compound that inhibits the formation of Z-α1AT polymers, as well as in vitro and in silico strategies for identifying and characterizing additional blocking molecules of Z-α1AT polymerization.« less

  1. INTEGRATED AND FIBER OPTICS: Investigation of the refractive index profile of inhomogeneous iron garnet films containing bismuth

    NASA Astrophysics Data System (ADS)

    Arzamastseva, G. V.; Kravchenko, V. B.; Filimonova, L. M.

    1989-02-01

    The refractive index n of quasihomogeneous iron garnet films with the composition (YGdYb)3 - xBixFe5 - yAlyO12 increased considerably as a result of reduction in the growth temperature Tg. This was attributed mainly by an increase in x and a reduction in y. The dependences n(Tg) were used to select the conditions for growth of inhomogeneous (across the thickness) films and to predict the refractive index profile n(z), where z was measured from the free surface along the normal to the film. The spectra of optical modes were analyzed in the WKB approximation and this yielded the n(z) profiles for films with a refractive index n decreasing monotonically from the free surface and for films with the symmetric profile n(z) (buried waveguides). The n(z) profiles were compared with the distributions of the compensation temperature Tc(z), and of x(z) and y(z) across the thickness.

  2. Metabolic changes after a hypocaloric, low-glycemic-index diet in obese children.

    PubMed

    Parillo, M; Licenziati, M R; Vacca, M; De Marco, D; Iannuzzi, A

    2012-07-01

    A low glycemic index (LGI) diet has been proposed as a treatment for obesity in adults; few studies have evaluated LGI diets in obese children. The purpose of the study was to compare the effects of two diets, with similar energy intakes, but different glycemic indexes in a pediatric outpatient setting. A parallel- group, randomized controlled trial was conducted, and 22 obese outpatient children with a body mass index (BMI) Z-score >2 (11 females and 11 males, BMI 28.9±2.9 kg/m²) were included in the study. Patients were randomly allocated to a hypocaloric LGI (GI:60), or to a hypocaloric high glycemic index (HGI) diet (GI:90). The LGI and HGI diets were almost equivalent for macronutrient composition. Anthropometric and biochemical parameters were measured at baseline and after 6 months. In both groups there were significant decreases in BMI, BMI Z-score, blood pressure, and high-sensitivity C-reactive protein. Only LGI diets produced a significant decrease in waist circumference and homeostasis model assessment. Analysis of variance demonstrated that the BMI Z-score decrease from baseline values was significantly greater after the LGI diet than after the HGI diet [-0.20 (95% confidence interval (CI) -0.29 to -0.10) vs -0.34 (95%CI -0.43 to -0.24)], mean difference between groups -0.14 (95%CI -0.27 to -0.01), p<0.05). Changes in triglyceride concentrations were significantly lower in LGI as compared to HGI diet (p<0.05). This study demonstrates that a hypocaloric LGI diet has beneficial metabolic effects in comparison to a hypocaloric HGI diet in obese children.

  3. Enhanced index tracking modeling in portfolio optimization with mixed-integer programming z approach

    NASA Astrophysics Data System (ADS)

    Siew, Lam Weng; Jaaman, Saiful Hafizah Hj.; Ismail, Hamizun bin

    2014-09-01

    Enhanced index tracking is a popular form of portfolio management in stock market investment. Enhanced index tracking aims to construct an optimal portfolio to generate excess return over the return achieved by the stock market index without purchasing all of the stocks that make up the index. The objective of this paper is to construct an optimal portfolio using mixed-integer programming model which adopts regression approach in order to generate higher portfolio mean return than stock market index return. In this study, the data consists of 24 component stocks in Malaysia market index which is FTSE Bursa Malaysia Kuala Lumpur Composite Index from January 2010 until December 2012. The results of this study show that the optimal portfolio of mixed-integer programming model is able to generate higher mean return than FTSE Bursa Malaysia Kuala Lumpur Composite Index return with only selecting 30% out of the total stock market index components.

  4. Height-age and site index curves for Pacific silver fir in the Pacific Northwest.

    Treesearch

    Gerald E. Hoyer; Francis R. Herman

    1989-01-01

    Forty felled dominant and codominant Pacific silver fir trees (Abies amabilis Dougl. ex Forbes) from 39 locations provided the basis for height-age and site index curves. Trees were from upper slope forests of the Cascade Range in Oregon and Washington. Trees ranged in age from 100 to 300 years and were identified by their height-growth trend as...

  5. EJSCREEN Indexes 2015 Public

    EPA Pesticide Factsheets

    There is an EJ Index for each environmental indicator. There are eight EJ Indexes in EJSCREEN reflecting the 8 environmental indicators. The EJ Index names are: Particulate Matter (PM2.5), Ozone Traffic Proximity and Volume, Lead Paint Indicator, Proximity to Risk Management Plan Sites, Proximity to National Priorities List Sites, Proximity to Treatment Storage and Disposal Facilities, and Proximity to Major Direct Water Dischargers. The EJ index is constructed as follows: EJ Index = (Environmental Indicator) * (Demographic Index for Block Group - Demographic Index for U.S.) * (Block Group Population)The EJ index is constructed as follows: EJ Index = (Environmental Indicator) * (Demographic Index for Block Group - Demographic Index for U.S.) * (Block Group Population)

  6. Validity of body mass index as a measurement of adiposity in infancy

    USDA-ARS?s Scientific Manuscript database

    To assess the validity of body mass index (BMI) and age- and sex-standardized BMI z-score (BMIZ) as surrogates for adiposity (body fat percentage [BF%], fat mass, and fat mass index [kg/m2]) at 3 time points in infancy (1, 4, and 7 months) and to assess the extent to which the change in BMIZ represe...

  7. Luminescence properties and energy transfer of site-sensitive Ca(6-x-y)Mg(x-z)(PO(4))(4):Eu(y)(2+),Mn(z)(2+) phosphors and their application to near-UV LED-based white LEDs.

    PubMed

    Kwon, Ki Hyuk; Im, Won Bin; Jang, Ho Seong; Yoo, Hyoung Sun; Jeon, Duk Young

    2009-12-21

    On the basis of the structural information that the host material has excellent charge stabilization, blue-emitting Ca(6-x-y)Mg(x)(PO(4))(4):Eu(y)(2+) (CMP:Eu(2+)) phosphors were synthesized and systematically optimized, and their photoluminescence (PL) properties were evaluated. Depending upon the amount of Mg added, the emission efficiency of the phosphors could be enhanced. The substitution of Eu(2+) affected their maximum wavelength (lambda(max)) and thermal stability because the substitution site of Eu(2+) could be varied. To obtain single-phase two-color-emitting phosphors, we incorporated Mn(2+) into CMP:Eu(2+) phosphors. Weak red emission resulting from the forbidden transition of Mn(2+) could be enhanced by the energy transfer from Eu(2+) to Mn(2+) that occurs because of the spectral overlap between the photoluminescence excitation (PLE) spectrum of Mn(2+) and the PL spectrum of Eu(2+). The energy transfer process was confirmed by the luminescence spectra, energy transfer efficiency, and decay curve of the phosphors. Finally, the optimized Ca(6-x-y)Mg(x-z)(PO(4))(4):Eu(y)(2+),Mn(z)(2+) (CMP:Eu(2+),Mn(2+)) phosphors were applied with green emitting Ca(2)MgSi(2)O(7):Eu(2+) (CMS:Eu(2+)) phosphors to ultraviolet (UV) light emitting diode (LED)-pumped white LEDs. The CMS:Eu(2+)-mixed CMP:Eu(2+), Mn(2+)-based white LEDs showed an excellent color rendering index (CRI) of 98 because of the broader emission band and more stable color coordinates than those of commercial Y(3)Al(5)O(12):Ce(3+) (YAG:Ce(3+))-based white LEDs under a forward bias current of 20 mA. The fabricated white LEDs showed very bright natural white light that had the color coordinate of (0.3288, 0.3401), and thus CMP:Eu(2+),Mn(2+) could be regarded as a good candidate for UV LED-based white LEDs.

  8. Sensitizing effect of Z,Z-bilirubin IXα and its photoproducts on enzymes in model solutions

    NASA Astrophysics Data System (ADS)

    Plavskii, V. Yu.; Mostovnikov, V. A.; Tret'yakova, A. I.; Mostovnikova, G. R.

    2008-05-01

    In model systems, we have studied side effects which may be induced by light during phototherapy of hyperbilirubinemia (jaundice) in newborn infants, with the aim of reducing the Z,Z-bilirubin IXα (Z,Z-BR IXα) level. We have shown that the sensitizing effect of Z,Z-BR IXα, localized at strong binding sites of the human serum albumin (HSA) macromolecule, is primarily directed at the amino acid residues of the carrier protein and does not involve the molecules of the enzyme (lactate dehydrogenase (LDH)) present in the buffer solution. The detected photodynamic damage to LDH is due to sensitization by bilirubin photoisomers, characterized by lower HSA association constants and located (in contrast to native Z,Z-BR IXα) on the surface of the HSA protein globule. Based on study of the spectral characteristics of the photoproducts of Z,Z-BR IXα and comparison of their accumulation kinetics in solution and the enzyme photo-inactivation kinetics, we concluded that the determining role in sensitized damage to LDH is played by lumirubin. The photosensitization effect depends on the wavelength of the radiation used for photoconversion of bilirubin. When (at the beginning of exposure) we make sure that identical numbers of photons are absorbed by the pigment in the different spectral ranges, the side effect is minimal for radiation corresponding to the long-wavelength edge of the bilirubin absorption band. We have shown that for a bilirubin/HSA concentration ratio >2 (when some of the pigment molecules are sorbed on the surface of the protein globule), the bilirubin can act as a photosensitizing agent for the enzyme present in solution. We discuss methods for reducing unfavorable side effects of light on the body of newborn infants during phototherapy of hyperbilirubinemia.

  9. On the selection of high-z quasars using LOFAR observations

    NASA Astrophysics Data System (ADS)

    Retana-Montenegro, Edwin; Röttgering, Huub

    2018-03-01

    We present a method to identify candidate quasars which combines optical/infrared color selection with radio detections from the Low Frequency ARray (LOFAR) at 150MHz. We apply this {method} in a region of 9 square degrees located in the Boötes field, with a wealth of multi-wavelength data. Our LOFAR imaging in the central region reaches a rms noise of ˜50μJy with a resolution of 5''. This is so deep that we also routinely, `radio-quiet' quasars. We use quasar spectroscopy from the literature to calculate the completeness and efficiency of our selection method. We conduct our analysis in two redshift intervals, 1<z<2 and 2<z<3. For objects at 1.0<z<2.0, we identify 51% of the spectroscopic quasars, and 80% of our candidates are in the spectroscopic sample; while for objects at 2.0<z<3.0 these numbers are 62% and 30%, respectively. We investigate the effect of the radio spectral index distribution on our selection of candidate quasars. For this purpose, we calculate the spectral index between 1400MHz and 150MHz, by combining our LOFAR-Boötes data with 1.4GHz imaging of the Boötes field obtained with the Westerbork Synthesis Radio Telescope (WSRT), which has a rms noise of σ˜28μJy with a resolution of 13''×27''. We find that 27% of the candidate quasars are detected at 1400 MHz, and that these detected objects have a spectral index distribution with a median value of α=-0.73±0.07. Using a flux density threshold of S_{150MHz}=1.50mJy, so that all the α>-1.0 sources can be detected in the WSRT-Boötes map, we find that the spectral index distribution of the 21 quasars in the resulting sample is steeper than the general LOFAR-WSRT spectral index distribution with a median of α=-0.80±0.06. As the upcoming LOFAR wide area surveys are much deeper than the traditional 1.4GHz surveys like NVSS and FIRST, this indicates that LOFAR in combination with optical and infrared will be an excellent fishing ground to obtain large samples of quasars.

  10. [Effect of amphipathic helix characteristics of FtsZ (236-245) domain on FtsZ assembly and its function in Escherichia coli strains].

    PubMed

    Ma, Qingsu; Zhang, Huijuan; Zheng, Xiaowei; Huo, Yujia; Lu, Feng

    2017-04-04

    To study the effect of amphipathic helix characteristics of FtsZ (236-245) domain on FtsZ assembly and interaction of FtsZ with FtsA in Escherichia coli strains. We constructed FtsZ and its mutant's plasmids by molecular clone and site-directed mutagenesis, and purified targeted proteins using affinity chromatography. QN23-QN29 strains were constructed by linear DNA homologous recombination and P1 transduction. We observed cellular localization patterns of FtsZ and its mutants in E. coli by living cell imaging experiments, examined membrane binding properties of FtsZ mutants by membrane proteins isolation and Western blot analysis, and analyzed interaction of FtsZ/FtsZ* with FtsA by Co-immunoprecipitation and far Western blot. Native gel separation and in vitro polymerization experiments were done to check effects of FtsZ point mutation on FtsZ assembly. Yfp-labeled FtsZE237A/K and FtsZE241A/K mutant proteins failed to localize in E. coli strains, assemble into functional Z-ring structure, and had decreased function of FtsZ (wt). In vitro experiments showed that E237A/K and E241A/K mutations of FtsZ decreased the polymerization efficiency of FtsZ monomer, weakened FtsZ*-FtsA interaction and changed membrane binding properties of FtsZ. FtsZ E237 and E241 are critical amino acids that affect the amphipathic helix characteristics of FtsZ (236-245) domain, FtsZ assembly and FtsZ-FtsA interaction in E. coli strains.

  11. Nucleic acid indexing

    DOEpatents

    Guilfoyle, Richard A.; Guo, Zhen

    2001-01-01

    A restriction site indexing method for selectively amplifying any fragment generated by a Class II restriction enzyme includes adaptors specific to fragment ends containing adaptor indexing sequences complementary to fragment indexing sequences near the termini of fragments generated by Class II enzyme cleavage. A method for combinatorial indexing facilitates amplification of restriction fragments whose sequence is not known.

  12. Nucleic acid indexing

    DOEpatents

    Guilfoyle, Richard A.; Guo, Zhen

    1999-01-01

    A restriction site indexing method for selectively amplifying any fragment generated by a Class II restriction enzyme includes adaptors specific to fragment ends containing adaptor indexing sequences complementary to fragment indexing sequences near the termini of fragments generated by Class II enzyme cleavage. A method for combinatorial indexing facilitates amplification of restriction fragments whose sequence is not known.

  13. Use of a generalized sigmoid growth function to predict site index for unmanaged loblolly and slash pine plantations in East Texas

    Treesearch

    Dean W. Coble; Young-Jin Lee

    2006-01-01

    A generalized sigmoid growth function was used in this study to model site index (SI) for unmanaged or lowintensity managed loblolly pine (Pinus taeda, L.) and slash pine (Pinus elliottii, Engelm.) plantations in east Texas. Schnute's growth function was fit to 11,367 and 5,040 height-age observations of loblolly and slash...

  14. Linking climate, gross primary productivity, and site index across forests of the western United States

    Treesearch

    Aaron R. Weiskittel; Nicholas L. Crookston; Philip J. Radtke

    2011-01-01

    Assessing forest productivity is important for developing effective management regimes and predicting future growth. Despite some important limitations, the most common means for quantifying forest stand-level potential productivity is site index (SI). Another measure of productivity is gross primary production (GPP). In this paper, SI is compared with GPP estimates...

  15. Progress Towards a Comprehensive Site Database for Taiwan Strong Motion Network

    NASA Astrophysics Data System (ADS)

    Kuo, C. H.; Lin, C. M.; Chang, S. C.; Wen, K. L.

    2016-12-01

    Site effect is usually treated as a simple site parameter like Vs30, which is a value of average shear wave velocity for the top 30 m of layers, in Ground Motion Prediction Equations (GMPEs) and engineering seismology. Although debates on usage of Vs30 for its advantage and disadvantage are still an open question, it has become the most widely be used site parameter in ground motion prediction, seismic hazard analysis, and building codes. Depth to the horizons with shear wave velocity of larger than 1.0 km/s (or 1.5 km/s, 2.5 km/s), the so called Z1.0 (or Z1.5, Z2.5), was recently introduced to the GMPEs of the Next Generation of Attenuation Equations (NGA) project in order to make up for the insufficient of Vs30 especially in regions covered by large thickness of sediments. However this kind of data is still rare and quite difficult to be acquired. This parameter is only available in Japan, California, and part region of Turkey at present. The high-frequency attenuation factor, i.e. kappa, is considered a significant parameter controlling attenuation of high-frequency seismic waves. High correlation is believed between kappa and local site conditions. S-wave velocity profiles of the Engineering Geology Database for TSMIP (EGDT) were measured using suspension PS-logging at more than 450 strong ground motion stations throughout Taiwan. Accurate Vs30 is therefore provided by the site database. Although the depths of most stations were only 35 m, Z1.0 still can be derived at dozens of stations near basin edges or piedmont area from EGDT. Several techniques including microtremor array, receiver function, and HVSR inversion have been used to obtain S-wave velocity profiles at strong motion stations and thus the parameter Z1.0 can be derived. A relationship between Vs30 and Z1.0 for Taiwan is consequently evaluated and further compared with those for Japan and California. Kappa at strong motion stations was calculated and a special correlation with Vs30 is found. The

  16. Lodgepole pine site index in relation to synoptic measures of climate, soil moisture and soil nutrients.

    Treesearch

    G. Geoff Wang; Shongming Huang; Robert A. Monserud; Ryan J. Klos

    2004-01-01

    Lodgepole pine site index was examined in relation to synoptic measures of topography, soil moisture, and soil nutrients in Alberta. Data came from 214 lodgepole pine-dominated stands sampled as a part of the provincial permanent sample plot program. Spatial location (elevation, latitude, and longitude) and natural subregions (NSRs) were topographic variables that...

  17. Effective GTP-replacing FtsZ inhibitors and antibacterial mechanism of action.

    PubMed

    Artola, Marta; Ruiz-Avila, Laura B; Vergoñós, Albert; Huecas, Sonia; Araujo-Bazán, Lidia; Martín-Fontecha, Mar; Vázquez-Villa, Henar; Turrado, Carlos; Ramírez-Aportela, Erney; Hoegl, Annabelle; Nodwell, Matthew; Barasoain, Isabel; Chacón, Pablo; Sieber, Stephan A; Andreu, Jose M; López-Rodríguez, María L

    2015-03-20

    Essential cell division protein FtsZ is considered an attractive target in the search for antibacterials with novel mechanisms of action to overcome the resistance problem. FtsZ undergoes GTP-dependent assembly at midcell to form the Z-ring, a dynamic structure that evolves until final constriction of the cell. Therefore, molecules able to inhibit its activity will eventually disrupt bacterial viability. In this work, we report a new series of small molecules able to replace GTP and to specifically inhibit FtsZ, blocking the bacterial division process. These new synthesized inhibitors interact with the GTP-binding site of FtsZ (Kd = 0.4-0.8 μM), display antibacterial activity against Gram-positive pathogenic bacteria, and show selectivity against tubulin. Biphenyl derivative 28 stands out as a potent FtsZ inhibitor (Kd = 0.5 μM) with high antibacterial activity [MIC (MRSA) = 7 μM]. In-depth analysis of the mechanism of action of compounds 22, 28, 33, and 36 has revealed that they act as effective inhibitors of correct FtsZ assembly, blocking bacterial division and thus leading to filamentous undivided cells. These findings provide a compelling rationale for the development of compounds targeting the GTP-binding site as antibacterial agents and open the door to antibiotics with novel mechanisms of action.

  18. Tissue Refractive Index Fluctuations Report on Cancer Development

    NASA Astrophysics Data System (ADS)

    Popescu, Gabriel

    2012-02-01

    The gold standard in histopathology relies on manual investigation of stained tissue biopsies. A sensitive and quantitative method for in situ tissue specimen inspection is highly desirable, as it will allow early disease diagnosis and automatic screening. Here we demonstrate that quantitative phase imaging of entire unstained biopsies has the potential to fulfill this requirement. Our data indicates that the refractive index distribution of histopathology slides, which contains information about the molecular scale organization of tissue, reveals prostate tumors. These optical maps report on subtle, nanoscale morphological properties of tissues and cells that cannot be recovered by common stains, including hematoxylin and eosin (H&E). We found that cancer progression significantly alters the tissue organization, as exhibited in our refractive index maps. Furthermore, using the quantitative phase information, we obtained the spatially resolved scattering mean free path and anisotropy factor g for entire biopsies and demonstrated their direct correlation with tumor presence. We found that these scattering parameters are able to distinguish between two adjacent grades, which is a difficult task and relevant for determining patient treatment. In essence, our results show that the tissue refractive index reports on the nanoscale tissue architecture and, in principle, can be used as an intrinsic marker for cancer diagnosis. [4pt] [1] Z. Wang, K. Tangella, A. Balla and G. Popescu, Tissue refractive index as marker of disease, Journal of Biomedical Optics, in press).[0pt] [2] Z. Wang, L. J. Millet, M. Mir, H. Ding, S. Unarunotai, J. A. Rogers, M. U. Gillette and G. Popescu, Spatial light interference microscopy (SLIM), Optics Express, 19, 1016 (2011).[0pt] [3] Z. Wang, D. L. Marks, P. S. Carney, L. J. Millet, M. U. Gillette, A. Mihi, P. V. Braun, Z. Shen, S. G. Prasanth and G. Popescu, Spatial light interference tomography (SLIT), Optics Express, 19, 19907-19918 (2011

  19. The association between physical activity, sedentary behavior, sleep, and body mass index z-scores in different settings among toddlers and preschoolers.

    PubMed

    Kuzik, Nicholas; Carson, Valerie

    2016-07-20

    Physical activity, sedentary behavior, and sleep are all movement behaviors that range on a continuum from no or low movement, to high movement. Consistent associations between movement behaviors and adiposity indicators have been observed in school-age children. However, limited information exists in younger children. Since approximately 50 % of Canadian children ≤5 years of age attend non-parental care, movement behaviors within and outside of the child care setting are important to consider. Therefore, this study examined the association between movement behaviors (physical activity, sedentary behavior and sleep) inside and outside of child care, with body mass index (BMI) z-scores, among a sample of toddlers and preschoolers. Children aged 19-60 months (n = 100) from eight participating child care centers throughout Alberta, Canada participated. Movement behaviors inside child care were accelerometer-derived (light physical activity, moderate to vigorous physical activity (MVPA), sedentary time, and time spent in sedentary bouts lasting 1-4, 5-9, 10-14 and ≥15 min) and questionnaire-derived (daytime sleep). Movement behaviors outside of child care were questionnaire-derived (MVPA, screen and non-screen sedentary behavior, and nighttime sleep). Demographic information (child age, child sex, and parental education) was also questionnaire-derived. Height and weight were measured, and age- and sex-specific BMI z-scores were calculated using World Health Organization growth standards. The association between movement behaviors and BMI z-scores were examined using linear regression models. Hours/day of sedentary bouts lasting 1-4 min (β =-0.8, 95 % CI:-1.5,-0.1) and nighttime sleep (β = 0.2, 95 % CI: 0.1, 0.4) were associated with BMI z-scores. However, after adjusting for demographics variables, sedentary bouts lasting 1-4 min (β =-0.7; 95 % CI:-1.5, 0.0) became borderline non-significant, while nighttime sleep (β = 0.2, 95 % CI: 0

  20. Hydrologic index development and application to selected Coastwide Reference Monitoring System sites and Coastal Wetlands Planning, Protection and Restoration Act projects

    USGS Publications Warehouse

    Snedden, Gregg A.; Swenson, Erick M.

    2012-01-01

    Hourly time-series salinity and water-level data are collected at all stations within the Coastwide Reference Monitoring System (CRMS) network across coastal Louisiana. These data, in addition to vegetation and soils data collected as part of CRMS, are used to develop a suite of metrics and indices to assess wetland condition in coastal Louisiana. This document addresses the primary objectives of the CRMS hydrologic analytical team, which were to (1) adopt standard time-series analytical techniques that could effectively assess spatial and temporal variability in hydrologic characteristics across the Louisiana coastal zone on site, project, basin, and coastwide scales and (2) develop and apply an index based on wetland hydrology that can describe the suitability of local hydrology in the context of maximizing the productivity of wetland plant communities. Approaches to quantifying tidal variability (least squares harmonic analysis) and partitioning variability of time-series data to various time scales (spectral analysis) are presented. The relation between marsh elevation and the tidal frame of a given hydrograph is described. A hydrologic index that integrates water-level and salinity data, which are collected hourly, with vegetation data that are collected annually is developed. To demonstrate its utility, the hydrologic index is applied to 173 CRMS sites across the coast, and variability in index scores across marsh vegetation types (fresh, intermediate, brackish, and saline) is assessed. The index is also applied to 11 sites located in three Coastal Wetlands Planning, Protection and Restoration Act projects, and the ability of the index to convey temporal hydrologic variability in response to climatic stressors and restoration measures, as well as the effect that this community may have on wetland plant productivity, is illustrated.

  1. Chromosome segregation drives division site selection in Streptococcus pneumoniae.

    PubMed

    van Raaphorst, Renske; Kjos, Morten; Veening, Jan-Willem

    2017-07-18

    Accurate spatial and temporal positioning of the tubulin-like protein FtsZ is key for proper bacterial cell division. Streptococcus pneumoniae (pneumococcus) is an oval-shaped, symmetrically dividing opportunistic human pathogen lacking the canonical systems for division site control (nucleoid occlusion and the Min-system). Recently, the early division protein MapZ was identified and implicated in pneumococcal division site selection. We show that MapZ is important for proper division plane selection; thus, the question remains as to what drives pneumococcal division site selection. By mapping the cell cycle in detail, we show that directly after replication both chromosomal origin regions localize to the future cell division sites, before FtsZ. Interestingly, Z-ring formation occurs coincidently with initiation of DNA replication. Perturbing the longitudinal chromosomal organization by mutating the condensin SMC, by CRISPR/Cas9-mediated chromosome cutting, or by poisoning DNA decatenation resulted in mistiming of MapZ and FtsZ positioning and subsequent cell elongation. Together, we demonstrate an intimate relationship between DNA replication, chromosome segregation, and division site selection in the pneumococcus, providing a simple way to ensure equally sized daughter cells.

  2. Development of a Site Comparison Index: Southeast Upland Forests

    DTIC Science & Technology

    2007-05-01

    was recorded to 0.1 cm, and only individual trees with a DBH =/> 5 cm were tallied. Pine snags and deciduous snags were also measured. Forty-three... tree species (plus Pine Snags and Deciduous Snags) represent- ing 7031 individuals were identified at the 40 sites, ranging from 1433 Loblolly Pines...of 40 sites. Based on basal areas of 24 tree species (N=6903), pine and deciduous snags. Table 1. Ten forest communities independently

  3. Indexing method for assessment of pollution potential of leachate from non-engineered landfill sites and its effect on ground water quality.

    PubMed

    Rana, Rishi; Ganguly, Rajiv; Gupta, Ashok Kumar

    2017-12-26

    Dumping of solid waste in a non-engineered landfill site often leads to contamination of ground water due to leachate percolation into ground water. The present paper assesses the pollution potential of leachate generated from three non-engineered landfill sites located in the Tricity region (one each in cities of Chandigarh, Mohali and Panchkula) of Northern India and its possible effects of contamination of groundwater. Analysis of physico-chemical properties of leachate from all the three landfill sites and the surrounding groundwater samples from five different downwind distances from each of the landfill sites were collected and tested to determine the leachate pollution index (LPI) and the water quality index (WQI). The Leachate Pollution Index values of 26.1, 27 and 27.8 respectively for landfill sites of Chandigarh (CHD), Mohali (MOH) and Panchkula (PKL) cities showed that the leachate generated are contaminated. The average pH values of the leachate samples over the sampling period (9.2 for CHD, 8.97 for MOH and 8.9 for PKL) show an alkaline nature indicating that all the three landfill sites could be classified as mature to old stage. The WQI calculated over the different downwind distances from the contamination sites showed that the quality of the groundwater improved with an increase in the downwind distance. Principal component analysis (PCA) carried out established major components mainly from natural and anthropogenic sources with cumulative variance of 88% for Chandigarh, 87.1% for Mohali and 87.8% for Panchkula. Hierarchical cluster analysis (HCA) identifies three distinct cluster types for the groundwater samples. These clusters corresponds to a relatively low pollution, moderate pollution and high pollution regions. It is suggested that all the three non-engineered landfill sites be converted to engineered landfill sites to prevent groundwater contamination and also new sites be considered for construction of these engineered landfill sites as

  4. Modeling study of deposition locations in the 291-Z plenum

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Mahoney, L.A.; Glissmeyer, J.A.

    The TEMPEST (Trent and Eyler 1991) and PART5 computer codes were used to predict the probable locations of particle deposition in the suction-side plenum of the 291-Z building in the 200 Area of the Hanford Site, the exhaust fan building for the 234-5Z, 236-Z, and 232-Z buildings in the 200 Area of the Hanford Site. The Tempest code provided velocity fields for the airflow through the plenum. These velocity fields were then used with TEMPEST to provide modeling of near-floor particle concentrations without particle sticking (100% resuspension). The same velocity fields were also used with PART5 to provide modeling ofmore » particle deposition with sticking (0% resuspension). Some of the parameters whose importance was tested were particle size, point of injection and exhaust fan configuration.« less

  5. Oxidation of a [Cu2S] complex by N2O and CO2: insights into a role of tetranuclearity in the CuZ site of nitrous oxide reductase.

    PubMed

    Bagherzadeh, Sharareh; Mankad, Neal P

    2018-01-25

    Oxidation of a [Cu 2 (μ-S)] complex by N 2 O or CO 2 generated a [Cu 2 (μ-SO 4 )] product. In the presence of a sulfur trap, a [Cu 2 (μ-O)] species also formed from N 2 O. A [Cu 2 (μ-CS 3 )] species derived from CS 2 modeled initial reaction intermediates. These observations indicate that one role of tetranuclearity in the Cu Z catalytic site of nitrous oxide reductase is to protect the crucial S 2- ligand from oxidation.

  6. Alphabetical Index of Parasitic Diseases

    MedlinePlus

    ... Z Index Laboratory Diagnostic Assistance Parasitic Disease and Malaria Strategic Priorities: 2015—2020 About our Division Get ... Lymphatic filariasis (Filariasis, Elephantiasis) Back To Top M Malaria ( Plasmodium Infection) Microsporidiosis ( Microsporidia Infection ) Mite Infestation (Scabies) ...

  7. Estimating site index of ponderosa pine in Northern California...standard curves, soil series, stem analysis

    Treesearch

    Robert F. Powers

    1972-01-01

    Four sets of standard site index curves based on statewide or regionwide averages were compared with data on natural growth from nine young stands of ponderosa pine in northern California. The curves tested were by Meyer; Dunning; Dunning and Reineke; and Arvanitis, Lindquist, and Palley. The effects of soils on height growth were also studied. Among the curves tested...

  8. The association between a body shape index and cardiovascular risk in overweight and obese children and adolescents.

    PubMed

    Mameli, Chiara; Krakauer, Nir Y; Krakauer, Jesse C; Bosetti, Alessandra; Ferrari, Chiara Matilde; Moiana, Norma; Schneider, Laura; Borsani, Barbara; Genoni, Teresa; Zuccotti, Gianvincenzo

    2018-01-01

    A Body Shape Index (ABSI) and normalized hip circumference (Hip Index, HI) have been recently shown to be strong risk factors for mortality and for cardiovascular disease in adults. We conducted an observational cross-sectional study to evaluate the relationship between ABSI, HI and cardiometabolic risk factors and obesity-related comorbidities in overweight and obese children and adolescents aged 2-18 years. We performed multivariate linear and logistic regression analyses with BMI, ABSI, and HI age and sex normalized z scores as predictors to examine the association with cardiometabolic risk markers (systolic and diastolic blood pressure, fasting glucose and insulin, total cholesterol and its components, transaminases, fat mass % detected by bioelectrical impedance analysis) and obesity-related conditions (including hepatic steatosis and metabolic syndrome). We recruited 217 patients (114 males), mean age 11.3 years. Multivariate linear regression showed a significant association of ABSI z score with 10 out of 15 risk markers expressed as continuous variables, while BMI z score showed a significant correlation with 9 and HI only with 1. In multivariate logistic regression to predict occurrence of obesity-related conditions and above-threshold values of risk factors, BMI z score was significantly correlated to 7 out of 12, ABSI to 5, and HI to 1. Overall, ABSI is an independent anthropometric index that was significantly associated with cardiometabolic risk markers in a pediatric population affected by overweight and obesity.

  9. Practical on-site measurement of heat strain with the use of a perceptual strain index.

    PubMed

    Chan, Albert P C; Yang, Y

    2016-02-01

    There have been increased interests in research on quantifying heat strain of construction workers and formulating corresponding guidelines for working in hot weather. The aim of this study was to validate a subjective measurement tool, the perceptual strain index (PeSI), for measuring heat strain in real-work settings. A total of sixteen construction workers were invited to participate in the field surveys. Empiric-based human monitoring was carried out with simultaneous micrometeorological (wet-bulb globe temperature, WBGT), physiological (heart rate, HR), and perceptual (perceived exertion, RPE; thermal sensation, TS) measurements throughout the test. The relative heart rate (RHR), the physiological strain index (PSIHR), and the PeSI were then calculated accordingly. The PeSI exhibited moderate correlations with WBGT and RHR (r = 0.42 and 0.40, respectively), which indicated the PeSI was sensitive to the variants of WBGT and RHR. The results of regression analysis indicated that the PeSI changed in the same general manner as the PSIHR, with a relatively large determination coefficient (R(2) = 0.67). The established perceptual strain zone illustrated that the PeSI ranging from 7 to 8 would be the exposure limit of construction workers in hot weather. The PeSI is a simple, robust, reliable, and user-friendly tool for heat strain assessment in occupational settings. The perceptual strain zone will provide practical guidelines for on-site heat strain monitoring for construction workers.

  10. Adjusting site index and age to account for genetic effects in yield equations for loblolly pine

    Treesearch

    Steven A. Knowe; G. Sam Foster

    2010-01-01

    Nine combinations of site index curves and age adjustments methods were evaluated for incorporating genetic effects for open-pollinated loblolly pine (Pinus taeda L.) families. An explicit yield system consisting of dominant height, basal area, and merchantable green weight functions was used to compare the accuracy of predictions associated with...

  11. 78 FR 76033 - Truth in Lending (Regulation Z)

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-16

    ... BUREAU OF CONSUMER FINANCIAL PROTECTION 12 CFR Part 1026 Truth in Lending (Regulation Z) AGENCY... Card Accountability Responsibility and Disclosure Act of 2009 (CARD Act) and the Home Ownership and... re-calculated annually using the Consumer Price Index for Urban Wage Earners and Clerical Workers...

  12. Soil-Site Classification for Bottomland Hardwoods

    Treesearch

    John K. Francis

    1984-01-01

    Foresters have always needed a means of predicting tree growth. Of the many indexes of potential growth, site index is the most widely used. Site index may be defined as the height of dominant trees in a stand at a reference age (usually 50 years). Site index is, in theory, a true reflection of growth potential of the site because height growth is generally unaffected...

  13. Massive Galaxies at z=2-3: A Large Population of Disky Star-Forming Systems?

    NASA Astrophysics Data System (ADS)

    Weinzirl, Tim; Jogee, S.; GOODS-NICMOS Collaboration

    2011-01-01

    The assembly modes via which galaxies develop their present-day mass and structure remain hotly debated. We explore this issue using one of the largest samples of massive galaxies (166 with stellar mass Mstar ≥ 5 × 1010 M⊙) at z=1-3 with NICMOS F160W observations from the GOODS NICMOS Survey (GNS), along with complementary ACS, Spitzer, and Chandra data. Our findings are: (1) The majority of the massive galaxies at z=2-3 have a disky structure (as characterized by the index of single-component Sersic profiles). Most are also compact with half-light radii less than 2 kpc. These massive galaxies at z=2-3 appear to be radically different in structure from their more massive descendants at z 0. Through artificial redshfiting experiments based on redshifted simulated NICMOS data of such massive z 0 elliptical, S0, and spiral galaxies, we show that most of this difference in structure is not due to cosmological or instrumental effects. This implies that significant structural evolution is needed to convert the massive z=2-3 systems into their z 0 elliptical and S0 descendants, and places important constraints on the associated evolutionary mechanisms (e.g., major mergers and cold accretion). (2) Using IR luminosities inferred from Spitzer detections, we find that over z=1-3, the mean star formation rate (SFR) rises substantially, even if AGN candidates are excluded. SFRs of several hundred solar masses per year or higher are common. The results imply a much higher average cold gas fraction than exists in z 0 galaxies. (3) We identify AGN candidates using a variety of techniques (X-ray properties, IR power-law, and IR-to-optical excess) and classify about one-third of the massive galaxies at z=1-3 as AGN hosts. The AGN fraction rises with redshift and is 40% at z=2-3. A significant fraction of the AGN candidates have disky structures although they host massive black holes.

  14. Association between sleep duration and body mass index among US low-income preschoolers

    USDA-ARS?s Scientific Manuscript database

    Our objective was to verify whether sleep duration was related to body mass index z scores (zBMI) and whether bedtimes or ethnicity was a moderator of the sleep duration-zBMI association among preschoolers from low-income families. Two hundred twenty-eight African American and Hispanic parents and t...

  15. A description of the index of active Florida water data collection stations and a user's guide for station or site information retrieval using computer program Findex H578

    USGS Publications Warehouse

    Merritt, M.L.

    1977-01-01

    A computerized index of water-data collection activities and retrieval software to generate publication list of this information was developed for Florida. This system serves a vital need in the administration of the many and diverse water-data collection activities. Previously, needed data was very difficult to assemble for use in program planning or project implementation. Largely descriptive, the report tells how a file of computer card images has been established which contains entries for all sites in Florida at which there is currently a water-data-collection activity. Entries include information such as identification number, station name, location, type of site, county, information about data collection, funding, and other pertinent details. The computer program FINDEX selectively retrieves entries and lists them in a format suitable for publication. Updating the index is done routinely. (Woodard-USGS)

  16. Elevated guanosine 5'-diphosphate 3'-diphosphate level inhibits bacterial growth and interferes with FtsZ assembly.

    PubMed

    Yamaguchi, Takayoshi; Iida, Ken-Ichiro; Shiota, Susumu; Nakayama, Hiroaki; Yoshida, Shin-Ichi

    2015-12-01

    FtsZ, a protein essential for prokaryotic cell division, forms a ring structure known as the Z-ring at the division site. FtsZ has a GTP binding site and is assembled into linear structures in a GTP-dependent manner in vitro. We assessed whether guanosine 5'-diphosphate 3'-diphosphate (ppGpp), a global regulator of gene expression in starved bacteria, affects cell division in Salmonella Paratyphi A. Elevation of intracellular ppGpp levels by using the relA expression vector induced repression of bacterial growth and incorrect FtsZ assembly. We found that FtsZ forms helical structures in the presence of ppGpp by using the GTP binding site; however, ppGpp levels required to form helical structures were at least 20-fold higher than the required GTP levels in vitro. Furthermore, once formed, helical structures did not change to the straight form even after GTP addition. Our data indicate that elevation of the ppGpp level leads to inhibition of bacterial growth and interferes with FtsZ assembly. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  17. A case of Z/E-isomers elution order inversion caused by cosolvent percentage change in supercritical fluid chromatography.

    PubMed

    Pokrovskiy, Oleg I; Ustinovich, Konstantin B; Usovich, Oleg I; Parenago, Olga O; Lunin, Valeriy V; Ovchinnikov, Denis V; Kosyakov, Dmitry S

    2017-01-06

    A case of elution order inversion caused by cosolvent percentage change in supercritical fluid chromatography was observed and investigated in some detail. Z- and E-isomers of phenylisobutylketone oxime experience an elution order reversal on most columns if the mobile phase consists of CO 2 and alcohol. At lower percentages of alcohol Z-oxime is retained less, somewhere at 2-5% coelution occurs and at larger cosolvent volume elution order reverses - Z-oxime is eluted later than E-oxime. We suppose inversion with CO 2 -ROH phases happens due to a shift in balance between two main interactions governing retention. At low ROH percentages stationary phase surface is only slightly covered by ROH molecules so oximes primarily interact with adsorption sites via hydrogen bond formation. Due to intramolecular sterical hindrance Z-oxime is less able to form hydrogen bonds and consequently is eluted first. At higher percentages alcohols occupy most of strong hydrogen bonding sites on silica surface thus leaving non-specific electrostatic interactions predominantly responsible for Z/E selectivity. Z-oxime has a much larger dipole moment than E-oxime and at these conditions it is eluted later. Additional experimental data with CO 2 -CH 3 CN, hexane-iPrOH and CHF 3 -ROH mobile phases supporting this explanation are presented. Copyright © 2016 Elsevier B.V. All rights reserved.

  18. Bayesian spatial prediction of the site index in the study of the Missouri Ozark Forest Ecosystem Project

    Treesearch

    Xiaoqian Sun; Zhuoqiong He; John Kabrick

    2008-01-01

    This paper presents a Bayesian spatial method for analysing the site index data from the Missouri Ozark Forest Ecosystem Project (MOFEP). Based on ecological background and availability, we select three variables, the aspect class, the soil depth and the land type association as covariates for analysis. To allow great flexibility of the smoothness of the random field,...

  19. Estimates of site index and height growth for Douglas-fir in high-elevation forests of the Oregon-Washington Cascade Range: curves and tables for field application.

    Treesearch

    Donald J. DeMars; Francis R. Herman

    1987-01-01

    Estimation equations for height growth and site index were derived from stem-analysis data of Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco var. menziesii) in the highelevation forests of the Cascade Range in Oregon and Washington. Two sets of height-growth and site-index estimation curves and tables produced from...

  20. Site Index Tables for Shortleaf Pine In the Ozark Highlands of Northern Arkansas and Southern Missouri

    Treesearch

    Edwin R. Ferguson; David L. Graney

    1975-01-01

    Field guides are presented for estimating site index on each of the three major soil groups in the Ozark Highland Province: limestone-dolomite, sandstone, and fragipan soils. Factors utilized vary by soil groups but include aspect, township, slope shape and depth to pan, with adjustments for hardwood competition. Tabular predictions were within ± 3 feet of measured...

  1. Revised description of index of Florida water data collection active stations and a user's guide for station or site information retrieval computer program FINDEX H578

    USGS Publications Warehouse

    Geiger, Linda H.

    1983-01-01

    The report is an update of U.S. Geological Survey Open-File Report 77-703, which described a retrieval program for administrative index of active data-collection sites in Florida. Extensive changes to the Findex system have been made since 1977 , making the previous report obsolete. A description of the data base and computer programs that are available in the Findex system are documented in this report. This system serves a vital need in the administration of the many and diverse water-data collection activities. District offices with extensive data-collection activities will benefit from the documentation of the system. Largely descriptive, the report tells how a file of computer card images has been established which contains entries for all sites in Florida at which there is currently a water-data collection activity. Entries include information such as identification number, station name, location, type of site, county, frequency of data collection, funding, and other pertinent details. The computer program FINDEX selectively retrieves entries and lists them in a format suitable for publication. The index is updated routinely. (USGS)

  2. Z-drug for schizophrenia: A systematic review and meta-analysis.

    PubMed

    Kishi, Taro; Inada, Ken; Matsui, Yuki; Iwata, Nakao

    2017-10-01

    No systematic reviews and meta-analyses on the use of Z-drug for schizophrenia are available. Randomized, placebo-controlled, or non-pharmacological intervention-controlled trials published before 03/20/2017 were retrieved from major healthcare databases and clinical trial registries. A meta-analysis including only randomized, placebo-controlled trials was performed. Efficacy outcomes were measured as improvement in overall schizophrenia symptoms, total sleep time, and wake after sleep onset. Safety/acceptability outcomes were discontinuation rate and individual adverse events. Four trials [1 alpidem placebo-controlled study (n=66), 2 eszopiclone placebo-controlled studies (n=60), and 1 eszopiclone, shallow needling-controlled study (n=96)] were identified. The meta-analysis showed no significant differences in any outcome between pooled Z-drug and placebo treatment groups. For individual studies, alpidem was superior to placebo in improving the overall schizophrenia symptoms. One of the eszopiclone studies showed that eszopiclone was superior to placebo in improving the Insomnia Severity Index scores. Another eszopiclone study showed that eszopiclone did not differ from shallow needling therapy in improving both schizophrenia- and insomnia-related symptoms. Although this study failed to show significant benefits for the use of Z-drug in the treatment of schizophrenia, it showed that short-term use of eszopiclone is an acceptable method for treating persistent insomnia among these patients. Copyright © 2017 Elsevier B.V. All rights reserved.

  3. Height growth and site index curves for managed even-aged stands of ponderosa pine in the Pacific Northwest

    Treesearch

    James W. Barrett

    1978-01-01

    This paper presents height growth and site index curves and equations for even-aged, managed stands of ponderosa pine east of the Cascade Range in Oregon and Washington where height growth has not been suppressed by high density or related factors.

  4. Host composition dependent tunable multicolor emission in the single-phase Ba2(Ln(1-z)Tb(z))(BO3)2Cl:Eu phosphors.

    PubMed

    Xia, Zhiguo; Zhuang, Jiaqing; Meijerink, Andries; Jing, Xiping

    2013-05-14

    A new strategy based on the host composition design has been adopted to obtain efficient color-tunable emission from Ba2Ln(0.97-z)Tb(z)(BO3)2Cl:0.03Eu (Ln = Y, Gd and Lu, z = 0-0.97) phosphors. This study reveals that the single-phase Ba2Ln(1-z)Tb(z)(BO3)2Cl compounds can be applied to use allowed Eu(2+) absorption transitions to sensitize Eu(3+) emission via the energy transfer Eu(2+) → (Tb(3+))n → Eu(3+). The powder X-ray diffraction (XRD) and Rietveld refinement analysis shows single-phase Ba2Ln(1-z)Tb(z)(BO3)2Cl. As-prepared Ba2Ln(0.97-z)Tb(z)(BO3)2Cl:0.03Eu phosphors show intense green, yellow, orange and red emission under 377 nm near ultraviolet (n-UV) excitation due to a variation in the relative intensities of the Eu(2+), Tb(3+) and Eu(3+) emission depending on the Tb content (z) in the host composition, allowing color tuning. The variation in emission color is explained by energy transfer and has been investigated by photoluminescence and lifetime measurements and is further characterized by the Commission Internationale de l'éclairage (CIE) chromaticity indexes. The quantum efficiencies of the phosphors are high, up to 74%, and show good thermal stabilities up to 150 °C. This investigation demonstrates the possibility to sensitize Eu(3+) line emission by Eu(2+)via energy migration over Tb(3+) resulting in efficient color tunable phosphors which are promising for use in solid-state white light-emitting diodes (w-LEDs).

  5. FtsZ ring: the eubacterial division apparatus conserved in archaebacteria.

    PubMed

    Wang, X; Lutkenhaus, J

    1996-07-01

    FtsZ is a tubulin-like protein that is essential for cell division in eubacteria. It functions by forming a ring at the division site that directs septation. The archaebacteria constitute a kingdom of life separate from eubacteria and eukaryotes. Like eubacteria, archaebacteria are prokaryotes, although they are phylogenetically closer to eukaryotes. Here it is shown that archaebacteria also possess FtsZ and that it is biochemically similar to eubacterial FtsZs. Significantly, FtsZ from the archaebacterium Haloferax volcanii is a GTPase that is localized to a ring that coincides with the division constriction. These results indicate that the FtsZ ring was part of the division apparatus of a common prokaryotic ancestor that was retained by both eubacteria and archaebacteria.

  6. B-DNA to Z-DNA structural transitions in the SV40 enhancer: stabilization of Z-DNA in negatively supercoiled DNA minicircles

    NASA Technical Reports Server (NTRS)

    Gruskin, E. A.; Rich, A.

    1993-01-01

    During replication and transcription, the SV40 control region is subjected to significant levels of DNA unwinding. There are three, alternating purine-pyrimidine tracts within this region that can adopt the Z-DNA conformation in response to negative superhelix density: a single copy of ACACACAT and two copies of ATGCATGC. Since the control region is essential for both efficient transcription and replication, B-DNA to Z-DNA transitions in these vital sequence tracts may have significant biological consequences. We have synthesized DNA minicircles to detect B-DNA to Z-DNA transitions in the SV40 enhancer, and to determine the negative superhelix density required to stabilize the Z-DNA. A variety of DNA sequences, including the entire SV40 enhancer and the two segments of the enhancer with alternating purine-pyrimidine tracts, were incorporated into topologically relaxed minicircles. Negative supercoils were generated, and the resulting topoisomers were resolved by electrophoresis. Using an anti-Z-DNA Fab and an electrophoretic mobility shift assay, Z-DNA was detected in the enhancer-containing minicircles at a superhelix density of -0.05. Fab saturation binding experiments demonstrated that three, independent Z-DNA tracts were stabilized in the supercoiled minicircles. Two other minicircles, each with one of the two alternating purine-pyrimidine tracts, also contained single Z-DNA sites. These results confirm the identities of the Z-DNA-forming sequences within the control region. Moreover, the B-DNA to Z-DNA transitions were detected at superhelix densities observed during normal replication and transcription processes in the SV40 life cycle.

  7. Time Spent Outdoors at Midday and Children’s Body Mass Index

    PubMed Central

    Milne, Elizabeth; Simpson, Julie A.; Johnston, Robyn; Giles-Corti, Billie; English, Dallas R.

    2007-01-01

    Objectives. We investigated whether the Kidskin sun protection intervention increased children’s body mass index by reducing the time spent outdoors at midday. Methods. The Kidskin sun protection intervention involved 1614 Australian school children assigned to 1 of 3 groups: a control group, a moderate-intervention group, or a high-intervention group. Schools in the control group received the standard health curriculum and schools in the intervention groups received a multicomponent intervention. Outcomes included time spent outdoors and nevus development (a marker of melanoma risk). Height and weight were measured at 3 time points. Body mass index was transformed into age- and gender-specific z scores; z scores at each age were modeled simultaneously. Time spent outdoors at ages 10 and 12 years was analyzed using a linear mixed effects modeling. Results. The proportion of children who were overweight or obese increased with age. The moderate-intervention and control groups had a minimal increase in z score over time, and the z score for the high-intervention group decreased over time. There were no differences among groups with respect to total time outdoors at any age. Conclusions. It is possible to reduce the time children spend outdoors when ultraviolet radiation is high without producing an unfavorable effect on the children’s body mass index. PMID:17194858

  8. Functions of the uvula and Z-pharyngoplasty.

    PubMed

    Mukai, S; Mukai, C; Nitta, M

    2000-06-01

    UPPP includes uvulotomy. The uvula works as the pilot for eating and swallowing. We performed an operation which left the uvula intact and opened the pharynx by Z-opening the palate, Z-pharyngoplasty (ZPP). Twenty-four patients were studied before and after ZPP. The results of the operations were satisfactory. No patients complained of symptoms after uvulectomy. As for the changes indicated by sleep monitoring, minimum SaO2 increased significantly (P = 0.0026), pulse rate decreased significantly (P = 0.0144), apnea index decreased significantly (P = 0.0392), snoring decreased (P = 0.064), and the amount of hours of sleep when SaO2 was over 95% increased (P = 0.0690) after ZPP.

  9. Improved parametrization of the growth index for dark energy and DGP models

    NASA Astrophysics Data System (ADS)

    Jing, Jiliang; Chen, Songbai

    2010-03-01

    We propose two improved parameterized form for the growth index of the linear matter perturbations: (I) γ(z)=γ0+(γ∞-γ0)z/z+1 and (II) γ(z)=γ0+γ1 z/z+1 +(γ∞-γ1-γ0)(. With these forms of γ(z), we analyze the accuracy of the approximation the growth factor f by Ωmγ(z) for both the wCDM model and the DGP model. For the first improved parameterized form, we find that the approximation accuracy is enhanced at the high redshifts for both kinds of models, but it is not at the low redshifts. For the second improved parameterized form, it is found that Ωmγ(z) approximates the growth factor f very well for all redshifts. For chosen α, the relative error is below 0.003% for the ΛCDM model and 0.028% for the DGP model when Ωm=0.27. Thus, the second improved parameterized form of γ(z) should be useful for the high precision constraint on the growth index of different models with the observational data. Moreover, we also show that α depends on the equation of state w and the fractional energy density of matter Ωm0, which may help us learn more information about dark energy and DGP models.

  10. A specific role for the ZipA protein in cell division: stabilization of the FtsZ protein.

    PubMed

    Pazos, Manuel; Natale, Paolo; Vicente, Miguel

    2013-02-01

    In Escherichia coli, the cell division protein FtsZ is anchored to the cytoplasmic membrane by the action of the bitopic membrane protein ZipA and the cytoplasmic protein FtsA. Although the presence of both ZipA and FtsA is strictly indispensable for cell division, an FtsA gain-of-function mutant FtsA* (R286W) can bypass the ZipA requirement for cell division. This observation casts doubts on the role of ZipA and its need for cell division. Maxicells are nucleoid-free bacterial cells used as a whole cell in vitro system to probe protein-protein interactions without the need of protein purification. We show that ZipA protects FtsZ from the ClpXP-directed degradation observed in E. coli maxicells and that ZipA-stabilized FtsZ forms membrane-attached spiral-like structures in the bacterial cytoplasm. The overproduction of the FtsZ-binding ZipA domain is sufficient to protect FtsZ from degradation, whereas other C-terminal ZipA partial deletions lacking it are not. Individual overproduction of the proto-ring component FtsA or its gain-of-function mutant FtsA* does not result in FtsZ protection. Overproduction of FtsA or FtsA* together with ZipA does not interfere with the FtsZ protection. Moreover, neither FtsA nor FtsA* protects FtsZ when overproduced together with ZipA mutants lacking the FZB domain. We propose that ZipA protects FtsZ from degradation by ClpP by making the FtsZ site of interaction unavailable to the ClpX moiety of the ClpXP protease. This role cannot be replaced by either FtsA or FtsA*, suggesting a unique function for ZipA in proto-ring stability.

  11. UVB-induced mutagenesis in hairless {lambda}lacZ-transgenic mice

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Frijhoff, A.F.W.; Rebel, H.; Mientjes, E.J.

    UVB-induced mutagenesis was studied in hairless 40.6 transgenic mice (Muta{trademark}Mouse), which contain the {lambda}gt1OlacZ shuttle vector as a target for mutagenesis. Mice were exposed at the dorsal side to either single doses of 200, 500, 800, or 1000 J/m{sup 2} UVB or to two successive irradiations of either 200 and 800 J/m{sup 2} UVB, with intervals of 1,3, or 5 days, or to 800 and 200 J/m{sup 2} UVB with a 5-day interval. At 23 days after the last exposure, lacZ mutant frequencies (MF) were determined in the epidermis. The lacZ MF increased linearly with increasing dose of UVB. Themore » mutagenic effect of two successive irradiations appeared to be additive. The UV-induced mutation spectrum was dominated by G:C{r_arrow}A:T transitions at dipyrimidine sites. DNA-sequence analysis of spontaneously mutated phages showed a diverse spectrum consisting of insertions, deletions and G:C {r_arrow} A:T transitions at CpG sites. the results indicate that the hairless {lambda}lacZ-transgenic mouse is a suitable in vivo model for studying UVB-induced mutations. 29 refs., 5 tabs.« less

  12. Z-scan: A simple technique for determination of third-order optical nonlinearity

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Singh, Vijender, E-mail: chahal-gju@rediffmail.com; Aghamkar, Praveen, E-mail: p-aghamkar@yahoo.co.in

    Z-scan is a simple experimental technique to measure intensity dependent nonlinear susceptibilities of third-order nonlinear optical materials. This technique is used to measure the sign and magnitude of both real and imaginary part of the third order nonlinear susceptibility (χ{sup (3)}) of nonlinear optical materials. In this paper, we investigate third-order nonlinear optical properties of Ag-polymer composite film by using single beam z-scan technique with Q-switched, frequency doubled Nd: YAG laser (λ=532 nm) at 5 ns pulse. The values of nonlinear absorption coefficient (β), nonlinear refractive index (n{sub 2}) and third-order nonlinear optical susceptibility (χ{sup (3)}) of permethylazine were found to bemore » 9.64 × 10{sup −7} cm/W, 8.55 × 10{sup −12} cm{sup 2}/W and 5.48 × 10{sup −10} esu, respectively.« less

  13. RELICS: A Candidate Galaxy Arc at z~10 and Other Brightly Lensed z>6 Galaxies

    NASA Astrophysics Data System (ADS)

    Salmon, Brett; Coe, Dan; Bradley, Larry; Bradac, Marusa; Huang, Kuang-Han; Oesch, Pascal; Brammer, Gabriel; Stark, Daniel P.; Sharon, Keren; Trenti, Michele; Avila, Roberto J.; Ogaz, Sara; Acebron, Ana; Andrade-Santos, Felipe; Carrasco, Daniela; Cerny, Catherine; Cibirka, Nathália; Dawson, William; Frye, Brenda; Hoag, Austin; Jones, Christine; Mainali, Ramesh; Ouchi, Masami; Paterno-Mahler, Rachel; Rodney, Steven; Umetsu, Keiichi; Zitrin, Adi; RELICS

    2018-01-01

    Massive foreground galaxy clusters magnify and distort the light of objects behind them, permitting a view into both the extremely distant and intrinsically faint galaxy populations. We present here some of the most brightly lensed z>6 galaxy candidates known from the Reionization Lensing Cluster Survey (RELICS) and the discovery of a particularly fortuitous z~10 galaxy candidate which has been arced by the effects of strong gravitational lensing. The z~10 candidate has a lensed H-band magnitude of 25.8 AB mag and a high lensing magnification (~4-7). The inferred upper limits on the stellar mass (log [M_star /M_Sun]=9.5) and star formation rate (log [SFR/(M_Sun/yr)]=1.5) indicate that this candidate is a typical star-forming galaxy on the z>6 SFR-M_star relation. We rule out the only low-z solution as unphysical based on the required stellar mass, dust attenuation, size, and [OIII] EW needed for a z~2 SED to match the data. Finally, we reconstruct the source-plane image and estimate the candidate's physical size at z~10, finding a half-light radius of r_e < 0.8 kpc that is in line with the sizes of other z>9 candidates. While the James Webb Space Telescope will detect z>10 with ease, this rare candidate offers the potential for unprecedented spatial resolution less than 500 Myr after the Big Bang.

  14. Genetic and Biochemical Characterization of the MinC-FtsZ Interaction in Bacillus subtilis

    PubMed Central

    Castellen, Patricia; Nogueira, Maria Luiza C.; Bettini, Jefferson; Portugal, Rodrigo V.; Zeri, Ana Carolina M.; Gueiros-Filho, Frederico J.

    2013-01-01

    Cell division in bacteria is regulated by proteins that interact with FtsZ and modulate its ability to polymerize into the Z ring structure. The best studied of these regulators is MinC, an inhibitor of FtsZ polymerization that plays a crucial role in the spatial control of Z ring formation. Recent work established that E. coli MinC interacts with two regions of FtsZ, the bottom face of the H10 helix and the extreme C-terminal peptide (CTP). Here we determined the binding site for MinC on Bacillus subtilis FtsZ. Selection of a library of FtsZ mutants for survival in the presence of Min overexpression resulted in the isolation of 13 Min-resistant mutants. Most of the substitutions that gave rise to Min resistance clustered around the H9 and H10 helices in the C-terminal domain of FtsZ. In addition, a mutation in the CTP of B. subtilis FtsZ also produced MinC resistance. Biochemical characterization of some of the mutant proteins showed that they exhibited normal polymerization properties but reduced interaction with MinC, as expected for binding site mutations. Thus, our study shows that the overall architecture of the MinC-FtsZ interaction is conserved in E. coli and B. subtilis. Nevertheless, there was a clear difference in the mutations that conferred Min resistance, with those in B. subtilis FtsZ pointing to the side of the molecule rather than to its polymerization interface. This observation suggests that the mechanism of Z ring inhibition by MinC differs in both species. PMID:23577149

  15. Effects of Landform on site index for two mesophytic tree species in the Appalachian Mountains of North Carolina, USA

    Treesearch

    W.Henry. McNab

    2010-01-01

    The effects of soil and topographic variables on forest site index were determined for two mesophytic tree species, northern red oak (Quercus rubra L.) and yellow-poplar (Liriodendron tulipifera L.) in the Southern Appalachian Mountains of North Carolina. Stand variables included soil solum thickness, soil A-horizon thickness,...

  16. Biorelevant physicochemical profiling of (E)- and (Z)-resveratrol determined from isomeric mixtures.

    PubMed

    Orgován, Gábor; Gonda, Imre; Noszál, Béla

    2017-05-10

    Biorelevant, isomer-specific physicochemical parameters of resveratrol, a multifunctional component in red wines, with cardioprotective, anti-Alzheimer and several other pharmacologic activities were determined. The parameters include site-specific basicities, lipophilicities, solubilities and diffusion constants for the two geometric isomers. The protonation equilibria of (E)- and (Z)-resveratrol were monitored by 1 H NMR-pH titrations. Five closely related auxiliary compounds ((E)-pinostilbene, (Z)-pinostilbene, (E)-pterostilbene, (Z)-pterostilbene and resorcinol) were also studied. Combining the datasets, the group-specific protonation constants of resveratrol isomers were determined. The results show that (Z)-resveratrol is more basic at every protonation site than the (E)-isomer. Lipophilicities are quantified in terms of logP values and were determined by octanol/water partition experiments and quantitative NMR spectroscopy: (E)-resveratrol was found to be more lipophilic. Since the molecular geometries of the isomers differ, diffusion ordered NMR spectroscopy (DOSY) experiments were also carried out to quantify the diffusion capabilities of the isomers: (Z)-resveratrol of bent shape has a slightly higher diffusion coefficient than its extended (E) counterpart. A striking 10-fold difference of water solubility was found in favor of the (Z) isomer, due obviously to the reduced water-repellent character in the more compact molecule. This is so far the greatest recorded solubility difference between geometric isomers of any compounds. Copyright © 2016. Published by Elsevier B.V.

  17. Familial Risk Moderates the Association Between Sleep and zBMI in Children

    PubMed Central

    El-Sheikh, Mona

    2013-01-01

    Objective A cumulative risk approach was used to examine the moderating effect of familial risk factors on relations between actigraphy-based sleep quantity (minutes) and quality (efficiency) and sex- and age-standardized body mass index (zBMI). Methods The sample included 124 boys and 104 girls with a mean age of 10.41 years (SD = 0.67). Children wore actigraphs for 1 week, and their height and weight were assessed in the lab. Results After controlling for potential confounds, multiple regression analyses indicated that sleep minutes predicted children’s zBMI and that both sleep minutes and efficiency interacted with family risk in the prediction of zBMI. The association between poor sleep and zBMI was especially evident for children exposed to higher levels of family risk. Conclusions Findings suggest that not all children who exhibit poor sleep are at equal risk for higher zBMI and that familial and contextual conditions need to be considered in this link. PMID:23699749

  18. Familial risk moderates the association between sleep and zBMI in children.

    PubMed

    Bagley, Erika J; El-Sheikh, Mona

    2013-08-01

    A cumulative risk approach was used to examine the moderating effect of familial risk factors on relations between actigraphy-based sleep quantity (minutes) and quality (efficiency) and sex- and age-standardized body mass index (zBMI). The sample included 124 boys and 104 girls with a mean age of 10.41 years (SD = 0.67). Children wore actigraphs for 1 week, and their height and weight were assessed in the lab. After controlling for potential confounds, multiple regression analyses indicated that sleep minutes predicted children's zBMI and that both sleep minutes and efficiency interacted with family risk in the prediction of zBMI. The association between poor sleep and zBMI was especially evident for children exposed to higher levels of family risk. Findings suggest that not all children who exhibit poor sleep are at equal risk for higher zBMI and that familial and contextual conditions need to be considered in this link.

  19. Library API for Z-Order Memory Layout

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bethel, E. Wes

    This library provides a simple-to-use API for implementing an altnerative to traditional row-major order in-memory layout, one based on a Morton- order space filling curve (SFC) , specifically, a Z-order variant of the Morton order curve. The library enables programmers to, after a simple initialization step, to convert a multidimensional array from row-major to Z- order layouts, then use a single, generic API call to access data from any arbitrary (i,j,k) location from within the array, whether it it be stored in row- major or z-order format. The motivation for using a SFC in-memory layout is for improved spatial locality,more » which results in increased use of local high speed cache memory. The basic idea is that with row-major order layouts, a data access to some location that is nearby in index space is likely far away in physical memory, resulting in poor spatial locality and slow runtime. On the other hand, with a SFC-based layout, accesses that are nearby in index space are much more likely to also be nearby in physical memory, resulting in much better spatial locality, and better runtime performance. Numerous studies over the years have shown significant runtime performance gains are realized by using a SFC-based memory layout compared to a row-major layout, sometimes by as much as 50%, which result from the better use of the memory and cache hierarchy that are attendant with a SFC-based layout (see, for example, [Beth2012]). This library implementation is intended for use with codes that work with structured, array-based data in 2 or 3 dimensions. It is not appropriate for use with unstructured or point-based data.« less

  20. A Spatially Based Area–Time Inundation Index Model Developed to Assess Habitat Opportunity in Tidal–Fluvial Wetlands and Restoration Sites

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Coleman, Andre M.; Diefenderfer, Heida L.; Ward, Duane L.

    The hydrodynamics of tidal wetland areas in the lower Columbia River floodplain and estuary directly affect habitat opportunity for endangered salmonid fishes. Physical and biological structures and functions in the system are directly affected by inundation patterns influenced by tidal cycles, hydropower operations, river discharge, upriver water withdrawals, climate, and physical barriers such as dikes, culverts, and tide gates. Ongoing ecosystem restoration efforts are intended to increase the opportunity for salmon to access beneficial habitats by hydrologically reconnecting main-stem river channels and diked areas within the historical floodplain. To address the need to evaluate habitat opportunity, a geographic information system-basedmore » Area-Time Inundation Index Model (ATIIM) was developed. The ATIIM integrates in situ or modeled hourly water-surface elevation (WSE) data and advanced terrain processing of high-resolution elevation data. The ATIIM uses a spatially based wetted-area algorithm to determine site average bankfull elevation, two- and three-dimensional inundation extent, and other site metrics. Hydrological process metrics such as inundation frequency, duration, maximum area, and maximum frequency area can inform evaluation of proposed restoration sites; e.g., determine trade-offs between WSE and habitat opportunity, contrast alternative restoration designs, predict impacts of altered flow regimes, and estimate nutrient and biomass fluxes. In an adaptive management framework, this model can be used to provide standardized site comparisons and effectiveness monitoring of changes in the developmental trajectories of restoration sites. Results are presented for 11 wetlands representative of tidal marshes, tidal forested wetlands, and restoration sites.« less

  1. Refractive Index of Sodium Iodide

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Jellison Jr, Gerald Earle; Boatner, Lynn A; Ramey, Joanne Oxendine

    2012-01-01

    The refractive index of sodium iodide, an important scintillator material that is widely used for radiation detection, is based on a single measurement made by Spangenberg at one wavelength using the index-matching liquid immersion method (Z. Kristallogr., 57, 494-534 (1923)). In the present paper, we present new results for the refractive index of sodium iodide as measured by the minimum deviation technique at six wavelengths between 436 nm (n=1.839 0.002) and 633 nm (n=1.786 0.002). These 6 measurements can be fit to a Sellmeier model, resulting in a 2 of 1.02, indicating a good fit to the data. In addition,more » we report on ellipsometry measurements, which suggest that the near-surface region of the air sensitive NaI crystal seriously degrades, even in a moisture-free environment, resulting in a significantly lower value of the refractive index near the surface. First-principles theoretical calculations of the NaI refractive index that agree with the measured values within 0.025-0.045 are also presented and discussed.« less

  2. TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules.

    PubMed

    Sahu, Debashish; Clore, G Marius; Iwahara, Junji

    2007-10-31

    A two-dimensional TROSY-based z-exchange 1H-15N correlation experiment for the quantitative analysis of kinetic processes in the slow exchange regime is presented. The pulse scheme converts the product operator terms Nz into 2NzHz and 2NzHz into -Nz in the middle of the z-mixing period, thereby suppressing the buildup of spurious semi-TROSY peaks arising from the different relaxation rates for the Nz and 2NzHz terms and simplifying the behavior of longitudinal magnetization for an exchanging system during the mixing period. Theoretical considerations and experimental data demonstrate that the TROSY-based z-exchange experiment permits quantitative determination of rate constants using the same procedure as that for the conventional non-TROSY 15Nz-exchange experiment. Line narrowing as a consequence of the use of the TROSY principle makes the method particularly suitable for kinetic studies at low temperature, thereby permitting activation energies to be extracted from data acquired over a wider temperature range. We applied this method to the investigation of the process whereby the HoxD9 homeodomain translocates between specific target sites on different DNA molecules via a direct transfer mechanism without going through the intermediary of free protein. The activation enthalpy for intermolecular translocation was determined to be 17 kcal/mol.

  3. A Benthic Community Index for streams in the Northern Lakes and Forests Ecoregion

    USGS Publications Warehouse

    Butcher, Jason T.; Stewart, Paul M.; Simon, Thomas P.

    2003-01-01

    Encompassing the northern glaciated section of the Midwest United States, the Northern Lakes and Forests Ecoregion is characterized by mixed conifer and deciduous forests and wetlands. Sites were randomly selected in the ecoregion using the Environmental Protection Agency's Environmental Monitoring and Assessment Program designed to develop an index of biotic integrity for wadeable streams. Macroinvertebrates were sampled during the fall of 1998 and 1999 using a multi-habitat, composite-sample method. Two hundred forty-six invertebrate taxa in 97 families were collected from 94 sites. Ten of 42 candidate metrics satisfied metric selection criteria, including six structural metrics (number of Ephemeroptera taxa, number of Diptera taxa, richness, Shannon-Wiener diversity, percent Trichoptera abundance, and percent Crustacea and Mollusca abundance), two functional metrics (number of Filterer taxa and number of Scraper taxa), and two conditional metrics (number of Ephemeroptera, Trichoptera, and Plecoptera taxa and Hilsenhoff Biotic Index). These metrics were used to develop a Benthic Community Index to assess the biological integrity of wadeable streams in the ecoregion. Index values ranged from 10 to 50, and scores from impaired sites were significantly different than non-impaired sites (P<0.001). Index values were divided into three narrative interpretations of biological integrity (poor, fair, and good). After further testing, the index may provide a useful biological assessment tool for resource managers in the ecoregion.

  4. Colocalization of cell division proteins FtsZ and FtsA to cytoskeletal structures in living Escherichia coli cells by using green fluorescent protein

    PubMed Central

    Ma, Xiaolan; Ehrhardt, David W.; Margolin, William

    1996-01-01

    In the current model for bacterial cell division, FtsZ protein forms a ring that marks the division plane, creating a cytoskeletal framework for the subsequent action of other proteins such as FtsA. This putative protein complex ultimately generates the division septum. Herein we report that FtsZ and FtsA proteins tagged with green fluorescent protein (GFP) colocalize to division-site ring-like structures in living bacterial cells in a visible space between the segregated nucleoids. Cells with higher levels of FtsZ–GFP or with FtsA–GFP plus excess wild-type FtsZ were inhibited for cell division and often exhibited bright fluorescent spiral tubules that spanned the length of the filamentous cells. This suggests that FtsZ may switch from a septation-competent localized ring to an unlocalized spiral under some conditions and that FtsA can bind to FtsZ in both conformations. FtsZ–GFP also formed nonproductive but localized aggregates at a higher concentration that could represent FtsZ nucleation sites. The general domain structure of FtsZ–GFP resembles that of tubulin, since the C terminus of FtsZ is not required for polymerization but may regulate polymerization state. The N-terminal portion of Rhizobium FtsZ polymerized in Escherichia coli and appeared to copolymerize with E. coli FtsZ, suggesting a degree of interspecies functional conservation. Analysis of several deletions of FtsA–GFP suggests that multiple segments of FtsA are important for its localization to the FtsZ ring. PMID:8917533

  5. On the robustness of the Hβ Lick index as a cosmic clock in passive early-type galaxies

    NASA Astrophysics Data System (ADS)

    Concas, Alice; Pozzetti, L.; Moresco, M.; Cimatti, A.

    2017-06-01

    We examine the Hβ Lick index in a sample of ˜24 000 massive (log(M/M_{⊙})>10.75) and passive early-type galaxies extracted from the Sloan Digital Sky Survey at z < 0.3, in order to assess the reliability of this index to constrain the epoch of formation and age evolution of these systems. We further investigate the possibility of exploiting this index as `cosmic chronometer', I.e. to derive the Hubble parameter from its differential evolution with redshift, hence constraining cosmological models independently of other probes. We find that the Hβ strength increases with redshift as expected in passive evolution models, and shows at each redshift weaker values in more massive galaxies. However, a detailed comparison of the observed index with the predictions of stellar population synthesis models highlights a significant tension, with the observed index being systematically lower than expected. By analysing the stacked spectra, we find a weak [N II] λ6584 emission line (not detectable in the single spectra) that anti-correlates with the mass, which can be interpreted as a hint of the presence of ionized gas. We estimated the correction of the Hβ index by the residual emission component exploiting different approaches, but find it very uncertain and model dependent. We conclude that, while the qualitative trends of the observed Hβ-z relations are consistent with the expected passive and downsizing scenario, the possible presence of ionized gas even in the most massive and passive galaxies prevents us to use this index for a quantitative estimate of the age evolution and for cosmological applications.

  6. The Relationship of the Post-reflux Swallow-induced Peristaltic Wave Index and Esophageal Baseline Impedance with Gastroesophageal Reflux Disease Symptoms

    PubMed Central

    Cho, Young Kyu; Lee, Joon Seong; Lee, Tae Hee; Hong, Su Jin; Park, Sang Joon; Jeon, Seong Ran; Kim, Hyun Gun; Kim, Jin-Oh

    2017-01-01

    Background/Aims The post-reflux swallow-induced peristaltic wave (PSPW) index and esophageal baseline impedance (BI) are novel impedance parameters used to evaluate esophageal chemical clearance and mucosal integrity. However, their relationship with reflux symptoms is not known. We aim to evaluate the correlations of PSPW index and esophageal BI with gastroesophageal reflux disease (GERD) symptoms. Methods We performed a retrospective review of multichannel intraluminal impedance and pH (MII-pH) tracings in patients with suspected GERD. Reflux symptoms were also analyzed from checklists using ordinal scales. The PSPW index and esophageal BIs in 6 spots (z1–z6) were measured. Bivariate (Spearman) correlation was used to analyze the relationship between the PSPW index or esophageal BI, and the degree of GERD symptoms measured. Results The MII-pH records of 143 patients were analyzed. The PSPW index was significantly lower in patients who had heartburn and negatively correlated with the degree of heartburn (r = −0.186, P < 0.05). On the contrary, the PSPW index was not significantly correlated with the degree of dysphagia (r = −0.013, P = 0.874). Distal esophageal BI was not significantly correlated with heartburn, but negatively correlated with the degree of dysphagia (z3: r = −0.328, z4: r = −0.361, z5: r = −0.316, z6: r = −0.273; P < 0.05). Conclusions These findings suggest that delayed chemical clearance of the esophagus may induce heartburn, but that it is not related to dysphagia. However, a lack of esophageal mucosal integrity may be related to dysphagia. PMID:28044052

  7. Somatostatin receptor 2 knockout/lacZ knockin mice show impaired motor coordination and reveal sites of somatostatin action within the striatum.

    PubMed

    Allen, Jeremy P; Hathway, Gareth J; Clarke, Neil J; Jowett, Mike I; Topps, Stephanie; Kendrick, Keith M; Humphrey, Patrick P A; Wilkinson, Lawrence S; Emson, Piers C

    2003-05-01

    The peptide somatostatin can modulate the functional output of the basal ganglia. The exact sites and mechanisms of this action, however, are poorly understood, and the physiological context in which somatostatin acts is unknown. Somatostatin acts as a neuromodulator via a family of five 7-transmembrane G protein-coupled receptors, SSTR1-5, one of which, SSTR2, is known to be functional in the striatum. We have investigated the role of SSTR2 in basal ganglia function using mice in which Sstr2 has been inactivated and replaced by the lacZ reporter gene. Analysis of Sstr2lacZ expression in the brain by beta-galactosidase histochemistry demonstrated a widespread pattern of expression. By comparison to previously published in situ hybridization and immunohistochemical data, Sstr2lacZ expression was shown to accurately recapitulate that of Sstr2 and thus provided a highly sensitive model to investigate cell-type-specific expression of Sstr2. In the striatum, Sstr2 expression was identified in medium spiny projection neurons restricted to the matrix compartment and in cholinergic interneurons. Sstr2 expression was not detected in any other nuclei of the basal ganglia except for a sparse number of nondopaminergic neurons in the substantia nigra. Microdialysis in the striatum showed Sstr2-null mice were selectively refractory to somatostatin-induced dopamine and glutamate release. In behavioural tests, Sstr2-null mice showed normal levels of locomotor activity and normal coordination in undemanding tasks. However, in beam-walking, a test of fine motor control, Sstr2-null mice were severely impaired. Together these data implicate an important neuromodulatory role for SSTR2 in the striatum.

  8. SITEQUAL--A User's Guide: Computerized Site Evaluation for 14 Southern Hardwood Species

    Treesearch

    Constance A. Harrington; Bettina M. Casson

    1986-01-01

    An interactive computer program, SITEQUAL, has been developed from the widely-used Baker and Broadfoot field guides, which evaluate site quality for 14 southern hardwood tree species. The SITEQUAL program calculates site index for all species simultaneously and provides a breakdown of site index into the component contributions by each of the four major soil factors...

  9. zCOSMOS: A Large VLT/VIMOS Redshift Survey Covering 0 < z < 3 in the COSMOS Field

    NASA Astrophysics Data System (ADS)

    Lilly, S. J.; Le Fèvre, O.; Renzini, A.; Zamorani, G.; Scodeggio, M.; Contini, T.; Carollo, C. M.; Hasinger, G.; Kneib, J.-P.; Iovino, A.; Le Brun, V.; Maier, C.; Mainieri, V.; Mignoli, M.; Silverman, J.; Tasca, L. A. M.; Bolzonella, M.; Bongiorno, A.; Bottini, D.; Capak, P.; Caputi, K.; Cimatti, A.; Cucciati, O.; Daddi, E.; Feldmann, R.; Franzetti, P.; Garilli, B.; Guzzo, L.; Ilbert, O.; Kampczyk, P.; Kovac, K.,; Lamareille, F.; Leauthaud, A.; Le Borgne, J.-F.; McCracken, H. J.; Marinoni, C.; Pello, R.; Ricciardelli, E.; Scarlata, C.; Vergani, D.; Sanders, D. B.; Schinnerer, E.; Scoville, N.; Taniguchi, Y.; Arnouts, S.; Aussel, H.; Bardelli, S.; Brusa, M.; Cappi, A.; Ciliegi, P.; Finoguenov, A.; Foucaud, S.; Franceschini, A.; Halliday, C.; Impey, C.; Knobel, C.; Koekemoer, A.; Kurk, J.; Maccagni, D.; Maddox, S.; Marano, B.; Marconi, G.; Meneux, B.; Mobasher, B.; Moreau, C.; Peacock, J. A.; Porciani, C.; Pozzetti, L.; Scaramella, R.; Schiminovich, D.; Shopbell, P.; Smail, I.; Thompson, D.; Tresse, L.; Vettolani, G.; Zanichelli, A.; Zucca, E.

    2007-09-01

    zCOSMOS is a large-redshift survey that is being undertaken in the COSMOS field using 600 hr of observation with the VIMOS spectrograph on the 8 m VLT. The survey is designed to characterize the environments of COSMOS galaxies from the 100 kpc scales of galaxy groups up to the 100 Mpc scale of the cosmic web and to produce diagnostic information on galaxies and active galactic nuclei. The zCOSMOS survey consists of two parts: (1) zCOSMOS-bright, a magnitude-limited I-band IAB<22.5 sample of about 20,000 galaxies with 0.1<z<1.2 covering the whole 1.7 deg2 COSMOS ACS field, for which the survey parameters at z~0.7 are designed to be directly comparable to those of the 2dFGRS at z~0.1 and (2) zCOSMOS-deep, a survey of approximately 10,000 galaxies selected through color-selection criteria to have 1.4<z<3.0, within the central 1 deg 2. This paper describes the survey design and the construction of the target catalogs and briefly outlines the observational program and the data pipeline. In the first observing season, spectra of 1303 zCOSMOS-bright targets and 977 zCOSMOS-deep targets have been obtained. These are briefly analyzed to demonstrate the characteristics that may be expected from zCOSMOS, and particularly zCOSMOS-bright, when it is finally completed between 2008 and 2009. The power of combining spectroscopic and photometric redshifts is demonstrated, especially in correctly identifying the emission line in single-line spectra and in determining which of the less reliable spectroscopic redshifts are correct and which are incorrect. These techniques bring the overall success rate in the zCOSMOS-bright so far to almost 90% and to above 97% in the 0.5<z<0.8 redshift range. Our zCOSMOS-deep spectra demonstrate the power of our selection techniques to isolate high-redshift galaxies at 1.4<z<3.0 and of VIMOS to measure their redshifts using ultraviolet absorption lines. Based on observations undertaken at the European Southern Observatory (ESO) Very Large Telescope

  10. Effects of grazing on leaf area index, fractional cover and evapotranspiration by a desert phreatophyte community at a former uranium mill site on the Colorado Plateau.

    PubMed

    Bresloff, Cynthia J; Nguyen, Uyen; Glenn, Edward P; Waugh, Jody; Nagler, Pamela L

    2013-01-15

    This study employed ground and remote sensing methods to monitor the effects of grazing on leaf area index (LAI), fractional cover (f(c)) and evapotranspiration (ET) of a desert phreatophyte community over an 11 year period at a former uranium mill site on the Colorado Plateau, U.S. Nitrate, ammonium and sulfate are migrating away from the mill site in a shallow alluvial aquifer. The phreatophyte community, consisting of Atriplex canescens (ATCA) and Sarcobatus vermiculatus (SAVE) shrubs, intercepts groundwater and could potentially slow the movement of the contaminant plume through evapotranspiration (ET). However, the site has been heavily grazed by livestock, reducing plant cover and LAI. We used livestock exclosures and revegetation plots to determine the effects of grazing on LAI, f(c) and ET, then projected the findings over the whole site using multi-platform remote sensing methods. We show that ET is approximately equal to annual precipitation at the site, but when ATCA and SAVE are protected from grazing they can develop high f(c) and LAI values, and ET can exceed annual precipitation, with the excess coming from groundwater discharge. Therefore, control of grazing could be an effective method to slow migration of contaminants at this and similar sites in the western U.S. Copyright © 2012 Elsevier Ltd. All rights reserved.

  11. Effects of grazing on leaf area index, fractional cover and evapotranspiration by a desert phreatophyte community at a former uranium mill site on the Colorado Plateau

    USGS Publications Warehouse

    Bresloff, Cynthia J.; Nguyen, Uyen; Glenn, Edward P.; Waugh, Jody; Nagler, Pamela L.

    2013-01-01

    This study employed ground and remote sensing methods to monitor the effects of grazing on leaf area index (LAI), fractional cover (fc) and evapotranspiration (ET) of a desert phreatophyte community over an 11 year period at a former uranium mill site on the Colorado Plateau, U.S. Nitrate, ammonium and sulfate are migrating away from the mill site in a shallow alluvial aquifer. The phreatophyte community, consisting of Atriplex canescens (ATCA) and Sarcobatus vermiculatus (SAVE) shrubs, intercepts groundwater and could potentially slow the movement of the contaminant plume through evapotranspiration (ET). However, the site has been heavily grazed by livestock, reducing plant cover and LAI. We used livestock exclosures and revegetation plots to determine the effects of grazing on LAI, fc and ET, then projected the findings over the whole site using multi-platform remote sensing methods. We show that ET is approximately equal to annual precipitation at the site, but when ATCA and SAVE are protected from grazing they can develop high fc and LAI values, and ET can exceed annual precipitation, with the excess coming from groundwater discharge. Therefore, control of grazing could be an effective method to slow migration of contaminants at this and similar sites in the western U.S.

  12. Clock is not a component of Z-bands.

    PubMed

    Wang, Jushuo; Dube, Dipak K; White, Jennifer; Fan, Yingli; Sanger, Jean M; Sanger, Joseph W

    2012-12-01

    The process of Z-band assembly begins with the formation of small Z-bodies composed of a complex of proteins rich in alpha-actinin. As additional proteins are added to nascent myofibrils, Z-bodies are transformed into continuous bands that form coherent discs of interacting proteins at the boundaries of sarcomeres. The steps controlling the transition of Z-bodies to Z-bands are not known. The report that a circadian protein, Clock, was localized in the Z-bands of neonatal rat cardiomyocytes raised the question whether this transcription factor could be involved in Z-band assembly. We found that the anti-Clock antibody used in the reported study also stained the Z-bands and Z-bodies of mouse and avian cardiac and skeletal muscle cells. YFP constructs of Clock that were assembled, however, did not localize to the Z-bands of muscle cells. Controls of Clock's activity showed that cotransfection of muscle cells with pYFP-Clock and pCeFP-BMAL1 led to the expected nuclear localization of YFP-Clock with its binding partner CeFP-BMAL1. Neither CeFP-BMAL1 nor antibodies directed against BMAL1 localized to Z-bands. A bimolecular fluorescence complementation assay (VC-BMAL1 and VN-Clock) confirmed the absence of Clock and BMAL1 from Z-bands, and their nuclear colocalization. A second anti-Clock antibody stained nuclei, but not Z-bands, of cells cotransfected with Clock and BMAL1 plasmids. Western blots of reactions of muscle extracts and purified alpha-actinins with the two anti-Clock antibodies showed that the original antibody cross-reacted with alpha-actinin and the second did not. These results cannot confirm Clock as an active component of Z-bands. © 2012 Wiley Periodicals, Inc. Copyright © 2012 Wiley Periodicals, Inc.

  13. A cheZ-Like Gene in Azorhizobium caulinodans Is a Key Gene in the Control of Chemotaxis and Colonization of the Host Plant.

    PubMed

    Liu, Xiaolin; Liu, Wei; Sun, Yu; Xia, Chunlei; Elmerich, Claudine; Xie, Zhihong

    2018-02-01

    Chemotaxis can provide bacteria with competitive advantages for survival in complex environments. The CheZ chemotaxis protein is a phosphatase, affecting the flagellar motor in Escherichia coli by dephosphorylating the response regulator phosphorylated CheY protein (CheY∼P) responsible for clockwise rotation. A cheZ gene has been found in Azorhizobium caulinodans ORS571, in contrast to other rhizobial species studied so far. The CheZ protein in strain ORS571 has a conserved motif similar to that corresponding to the phosphatase active site in E. coli The construction of a cheZ deletion mutant strain and of cheZ mutant strains carrying a mutation in residues of the putative phosphatase active site showed that strain ORS571 participates in chemotaxis and motility, causing a hyperreversal behavior. In addition, the properties of the cheZ deletion mutant revealed that ORS571 CheZ is involved in other physiological processes, since it displayed increased flocculation, biofilm formation, exopolysaccharide (EPS) production, and host root colonization. In particular, it was observed that the expression of several exp genes, involved in EPS synthesis, was upregulated in the cheZ mutant compared to that in the wild type, suggesting that CheZ negatively controls exp gene expression through an unknown mechanism. It is proposed that CheZ influences the Azorhizobium -plant association by negatively regulating early colonization via the regulation of EPS production. This report established that CheZ in A. caulinodans plays roles in chemotaxis and the symbiotic association with the host plant. IMPORTANCE Chemotaxis allows bacteria to swim toward plant roots and is beneficial to the establishment of various plant-microbe associations. The level of CheY phosphorylation (CheY∼P) is central to the chemotaxis signal transduction. The mechanism of the signal termination of CheY∼P remains poorly characterized among Alphaproteobacteria , except for Sinorhizobium meliloti , which

  14. For Parents: Vaccines for Your Children

    MedlinePlus

    ... content Start of Search Controls Search Form Controls Vaccines site Cancel Submit CDC A-Z Index MENU ... Z # Start of Search Controls Search Form Controls Vaccines site Cancel Submit For Parents: Vaccines for Your ...

  15. Cardiometabolic risk assessments by body mass index z-score or waist-to-height ratio in a multiethnic sample of sixth-graders.

    PubMed

    Kahn, Henry S; El ghormli, Laure; Jago, Russell; Foster, Gary D; McMurray, Robert G; Buse, John B; Stadler, Diane D; Treviño, Roberto P; Baranowski, Tom

    2014-01-01

    Convention defines pediatric adiposity by the body mass index z-score (BMIz) referenced to normative growth charts. Waist-to-height ratio (WHtR) does not depend on sex-and-age references. In the HEALTHY Study enrollment sample, we compared BMIz with WHtR for ability to identify adverse cardiometabolic risk. Among 5,482 sixth-grade students from 42 middle schools, we estimated explanatory variations (R (2)) and standardized beta coefficients of BMIz or WHtR for cardiometabolic risk factors: insulin resistance (HOMA-IR), lipids, blood pressures, and glucose. For each risk outcome variable, we prepared adjusted regression models for four subpopulations stratified by sex and high versus lower fatness. For HOMA-IR, R (2) attributed to BMIz or WHtR was 19%-28% among high-fatness and 8%-13% among lower-fatness students. R (2) for lipid variables was 4%-9% among high-fatness and 2%-7% among lower-fatness students. In the lower-fatness subpopulations, the standardized coefficients for total cholesterol/HDL cholesterol and triglycerides tended to be weaker for BMIz (0.13-0.20) than for WHtR (0.17-0.28). Among high-fatness students, BMIz and WHtR correlated with blood pressures for Hispanics and whites, but not black boys (systolic) or girls (systolic and diastolic). In 11-12 year olds, assessments by WHtR can provide cardiometabolic risk estimates similar to conventional BMIz without requiring reference to a normative growth chart.

  16. Structural Evolution and Atom Clustering in β-SiAlON: β-Si 6–z Al z O z N 8–z

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Cozzan, Clayton; Griffith, Kent J.; Laurita, Geneva

    2017-02-06

    SiAlON ceramics, solid solutions based on the Si 3N 4 structure, are important, lightweight structural materials with intrinsically high strength, high hardness, and high thermal and chemical stability. Described by the chemical formula β-Si 6–zAl zO zN 8–z, from a compositional viewpoint, these materials can be regarded as solid solutions between Si 3N 4 and Al 3O 3N. A key aspect of the structural evolution with increasing Al and O (z in the formula) is to understand how these elements are distributed on the β-Si 3N 4 framework. The average and local structural evolution of highly phase-pure samples of β-Simore » 6–zAl zO zN 8–z with z = 0.050, 0.075, and 0.125 are studied here, using a combination of X-ray diffraction, NMR studies, and density functional theory calculations. Synchrotron X-ray diffraction establishes sample purity and indicates subtle changes in the average structure with increasing Al content in these compounds. Solid-state magic-angle-spinning 27Al NMR experiments, coupled with detailed ab initio calculations of NMR spectra of Al in different AlO qN 4–q tetrahedra (0 ≤ q ≤ 4), reveal a tendency of Al and O to cluster in these materials. Independently, the calculations suggest an energetic preference for Al–O bond formation, instead of a random distribution, in the β-SiAlON system.« less

  17. Use of the landfill water pollution index (LWPI) for groundwater quality assessment near the landfill sites.

    PubMed

    Talalaj, Izabela A; Biedka, Pawel

    2016-12-01

    The purpose of the paper is to assess the groundwater quality near the landfill sites using landfill water pollution index (LWPI). In order to investigate the scale of groundwater contamination, three landfills (E, H and S) in different stages of their operation were taken into analysis. Samples of groundwater in the vicinity of studied landfills were collected four times each year in the period from 2004 to 2014. A total of over 300 groundwater samples were analysed for pH, EC, PAH, TOC, Cr, Hg, Zn, Pb, Cd, Cu, as required by the UE legal acts for landfill monitoring system. The calculated values of the LWPI allowed the quantification of the overall water quality near the landfill sites. The obtained results indicated that the most negative impact on groundwater quality is observed near the old Landfill H. Improper location of piezometer at the Landfill S favoured infiltration of run-off from road pavement into the soil-water environment. Deep deposition of the groundwater level at Landfill S area reduced the landfill impact on the water quality. Conducted analyses revealed that the LWPI can be used for evaluation of water pollution near a landfill, for assessment of the variability of water pollution with time and for comparison of water quality from different piezometers, landfills or time periods. The applied WQI (Water Quality Index) can also be an important information tool for landfill policy makers and the public about the groundwater pollution threat from landfill.

  18. Ruthenium red-induced bundling of bacterial cell division protein, FtsZ.

    PubMed

    Santra, Manas Kumar; Beuria, Tushar K; Banerjee, Abhijit; Panda, Dulal

    2004-06-18

    The assembly of FtsZ plays a major role in bacterial cell division, and it is thought that the assembly dynamics of FtsZ is a finely regulated process. Here, we show that ruthenium red is able to modulate FtsZ assembly in vitro. In contrast to the inhibitory effects of ruthenium red on microtubule polymerization, we found that a substoichiometric concentration of ruthenium red strongly increased the light-scattering signal of FtsZ assembly. Further, sedimentable polymer mass was increased by 1.5- and 2-fold in the presence of 2 and 10 microm ruthenium red, respectively. In addition, ruthenium red strongly reduced the GTPase activity and prevented dilution-induced disassembly of FtsZ polymers. Electron microscopic analysis showed that 4-10 microm of ruthenium red produced thick bundles of FtsZ polymers. The significant increase in the light-scattering signal and pelletable polymer mass in the presence of ruthenium red seemed to be due to the bundling of FtsZ protofilaments into larger polymers rather than the actual increase in the level of polymeric FtsZ. Furthermore, ruthenium red was found to copolymerize with FtsZ, and the copolymerization of substoichiometric amounts of ruthenium red with FtsZ polymers promoted cooperative assembly of FtsZ that produced large bundles. Calcium inhibited the binding of ruthenium red to FtsZ. However, a concentration of calcium 1000-fold higher than that of ruthenium red was required to produce similar effects on FtsZ assembly. Ruthenium red strongly modulated FtsZ polymerization, suggesting the presence of an important regulatory site on FtsZ and suggesting that a natural ligand, which mimics the action of ruthenium red, may regulate the assembly of FtsZ in bacteria.

  19. Z-LASIK and Trans-PRK for correction of high-grade myopia: safety, efficacy, predictability and clinical outcomes.

    PubMed

    Gershoni, Assaf; Mimouni, Michael; Livny, Eitan; Bahar, Irit

    2018-03-12

    The aim of the study was to examine the outcomes of transepithelial photorefractive keratectomy (Trans-PRK) and Femtosecond Laser-assisted in situ keratomileusis (Z-LASIK) for the correction of high myopia. A retrospective cohort study design was used. The study group included 792 eyes with high-grade myopia (- 6.0 diopters or higher) or high-grade myopia with astigmatism that were treated with Z-LASIK or Trans-PRK in 2013 through 2014 in an optical outpatient clinic of a large private medical service. The Trans-PRK group comprised of 674 eyes with a spherical equivalent (SE) of - 7.87 ± 1.46 and the Z-LASIK group comprised of 118 eyes with a SE of - 7.19 ± 0.81 (P < 0.001). The mean postoperative SE in the Trans-PRK group was - 0.06 and - 0.02 in the Z-LASIK group (P = 0.545). Efficacy index values were 0.92 in the Trans-PRK group and 0.95 in the Z-LASIK group (P = 0.083), and corresponding safety index values were 0.95 and 0.97 (P = 0.056). An UCVA of 20/40 or better was achieved in 94.20% of eyes in the Trans-PRK group, and 98.31% in the Z-LASIK group (P = 0.063). The majority of eyes in both the Trans-PRK and Z-LASIK groups were within ± 0.5D of attempted correction: 59.35 and 64.71%, respectively (P = 0.271). Both Trans-PRK and Z-LASIK demonstrated excellent efficacy, safety and predictability profiles, with results comparable and in some cases superior to the current literature. Results of Z-LASIK were slightly better than those of Trans-PRK, though the preoperative SE of the latter was higher.

  20. On the UV compactness and morphologies of typical Lyman α emitters from z ˜ 2 to z ˜ 6

    NASA Astrophysics Data System (ADS)

    Paulino-Afonso, Ana; Sobral, David; Ribeiro, Bruno; Matthee, Jorryt; Santos, Sérgio; Calhau, João; Forshaw, Alex; Johnson, Andrea; Merrick, Joanna; Pérez, Sara; Sheldon, Oliver

    2018-06-01

    We investigate the rest-frame UV morphologies of a large sample of Lyman α emitters (LAEs) from z ˜ 2 to z ˜ 6, selected in a uniform way with 16 different narrow and medium bands over the full COSMOS field. We use 3045 LAEs with Hubble Space Telescope coverage in a stacking analysis and find that they have MUV ˜ -20, below M_UV^\\ast at these redshifts. We also focus our analysis on a subsample of 780 individual galaxies with iAB < 25 for which GALFIT converges for 429 of them. The individual median size (re ˜ 1 kpc), ellipticities [slightly elongated with (b/a) ˜ 0.45], Sérsic index (disc-like with n ≲ 2), and light concentration (comparable to that of disc or irregular galaxies, with C ˜ 2.7) of LAEs show mild evolution from z ˜ 2 to z ˜ 6. LAEs with the highest rest-frame equivalent widths (EWs) are the smallest/most compact (re ˜ 0.8 kpc, compared to re ˜ 1.5 kpc for the lower EW LAEs). When stacking our samples in bins of fixed Lyα luminosity and Lyα EW, we find evidence for redshift evolution in n and C, but not in galaxy sizes. The evolution seems to be stronger for LAEs with 25 < EW < 100 Å. When compared to other star-forming galaxies (SFGs), LAEs are found to be smaller at all redshifts. The difference between the two populations changes with redshift, from a factor of ˜1 at z ≳ 5 to SFGs being a factor of ˜2-4 larger than LAEs for z ≲ 2. This means that at the highest redshifts, where typical sizes approach those of LAEs, the fraction of galaxies showing Lyα in emission (and with a high Lyα escape fraction) should be much higher, consistent with observations.

  1. Comparative evaluation of leachate pollution index of MSW landfill site of Kolkata with other metropolitan cities of India.

    PubMed

    Motling, Sanjay; Dutta, Amit; Mukherjee, S N; Kumar, Sunil

    2013-07-01

    The uncontrolled tipping of mixed urban solid waste in landfill site causes serious negative impacts on the environment. The major issue in this context is the generation of leachate which possesses potential of polluting freshwater ecosystem including groundwater besides associated health hazards and depletion of soil fertility. In this context, a pseudo computation quantitative tool, known as leachate pollution index (LPI), has been developed by some researchers for scaling pollution potential of landfill site owing to emergence of leachate. This paper. deals with the assessment of leachate quality of existing landfill site of Kolkata situated at Dhapa waste dumping ground through evaluation of the LPI from experimental analysis of leachate. The leachate was collected from this site in different seasons. 18 parameters were tested with real leachate samples in the Environmental Engineering Laboratory of Civil Engineering Department of Jadavpur University Kolkata. The results exhibited a very high value of organic pollutants in the leachate with COD as 21,129 mg/L and also values of TDS, Fe2+, Cr, Zn, chloride and ammonical nitrogen. The LPI value of Kolkata landfill site at Dhapa was estimated and also compared with leachate quality data of other metropolitan cities viz. Mumbai, Delhi, Chennai as available in literatures. It is found that LPI of the Kolkata landfill site is highest compared to all other landfill sites of other metropolitan cities in India.

  2. Hardwood regeneration related to overstory shortleaf pine (Pinus echinata mill.) basal area, site index, and time since cutting in Arkansas and eastern Oklahoma

    Treesearch

    Douglas J. Stevenson; Thomas B. Lynch; James M. Guldin

    2010-01-01

    Shortleaf pine grows in association with many other species, particularly understory hardwoods, which compete with it, limiting its productivity (Bower and Ferguson 1968, Cain 1988). Which species are the most competitive varies with site quality, density of the pine overstory and years since thinning. Basal area and site index closely approximate the principle...

  3. A human fecal contamination index for ranking impaired ...

    EPA Pesticide Factsheets

    Human fecal pollution of surface water remains a public health concern worldwide. As a result, there is a growing interest in the application of human-associated fecal source identification quantitative real-time PCR (qPCR) technologies for recreational water quality risk management. The transition from a research subject to a management tool requires the integration of standardized water sampling, laboratory, and data analysis procedures. In this study, a standardized HF183/BacR287 qPCR method was combined with a water sampling strategy and Bayesian data algorithm to establish a human fecal contamination index that can be used to rank impaired recreational water sites polluted with human waste. Stability and bias of index predictions were investigated under various parameters including siteswith different pollution levels, sampling period time range (1-15 weeks), and number of qPCR replicates per sample (2-14 replicates). Sensitivity analyses were conducted with simulated data sets (100 iterations) seeded with HF183/BacR287 qPCR laboratory measurements from water samples collected from three Southern California sites (588 qPCR measurements). Findings suggest that site ranking is feasible and that all parameters tested influence stability and bias in human fecal contamination indexscoring. Trends identified by sensitivity analyses will provide managers with the information needed to design and conduct field studies to rank impaired recreational water sites based

  4. Higgs decays to Z Z and Z γ in the standard model effective field theory: An NLO analysis

    NASA Astrophysics Data System (ADS)

    Dawson, S.; Giardino, P. P.

    2018-05-01

    We calculate the complete one-loop electroweak corrections to the inclusive H →Z Z and H →Z γ decays in the dimension-6 extension of the Standard Model Effective Field Theory (SMEFT). The corrections to H →Z Z are computed for on-shell Z bosons and are a precursor to the physical H →Z f f ¯ calculation. We present compact numerical formulas for our results and demonstrate that the logarithmic contributions that result from the renormalization group evolution of the SMEFT coefficients are larger than the finite next-to-leading-order contributions to the decay widths. As a byproduct of our calculation, we obtain the first complete result for the finite corrections to Gμ in the SMEFT.

  5. Color evolution from z = 0 to z = 1

    NASA Technical Reports Server (NTRS)

    Rakos, Karl D.; Schombert, James M.

    1995-01-01

    Rest frame Stroemgren photometry (3500 A, 4100 A, 4750 A, and 5500 A) is presented for 509 galaxies in 17 rich clusters between z = 0 and z = 1 as a test of color evolution. Our observations confirm a strong, rest frame, Butcher-Oemler effect where the fraction of blue galaxies increases from 20% at z = 0.4 to 80% at z = 0.9. We also find that a majority of these blue cluster galaxies are composed of normal disk or post-starburst systems based on color criteria. When comparing our colors to the morphological results from Hubble Space Telescope HST imaging, we propose that the blue cluster galaxies are a population of late-type, low surface brightness objects which fade and are then destroyed by the cluster tidal field. After isolating the red objects from Butcher-Oemler objects, we have compared the mean color of these old, non-star-forming objects with spectral energy distribution models in the literature as a test for passive galaxy evolution in ellipticals. We find good agreement with single-burst models which predict a mean epoch of galaxy formation at z = 5. Tracing the red envelope for ellipticals places the earliest epoch of galaxy formation at z = 10.

  6. [Estuary health assessment using a benthic-index of biotic integrity in Yangtze Estuary and its adjacent waters].

    PubMed

    Zhou, Xiao-wei; Wang, Li-ping; Zheng, Bing-hui; Liu, Lu-san; Fu, Qing

    2009-01-01

    A benthic index of biotic integrity (B-IBI) was developed for application in estuaries health assessment of the Yangtze Estuary and its adjacent waters. Benthic macro-invertebrate samples were collected from 41 stream sites (13 non-degraded stations and 28 degraded stations) in the Yangtze Estuary and its adjacent waters in July, 2005. The analyses of the range of index value distribution, Pearson correlation and judgment ability were performed on fourteen candidate metrics. Six biological metrics were selected for the establishment of B-IBI, which were Shannon-Wiener index, the species number, total density, total biomass, Carapace Animals density percentage and Echinoderms density percentage. B-IBI was obtained by sum up all these indices after which were transformed into a uniform score by using the ratio scoring method. Base on 50 percentile of B-IBI value in reference sites, the criteria of health ranking was determined. The proposed criteria of benthic-index of biotic integrity were as follows: B-IBI > 2.48 was regarded as health, 1.86-2.48 sub-health, 1.24-1.86 fair, 0.62-1.24 poor, and B-IBI < 0.62 very poor. Assessing with these criteria, the results showed that among the 41 sites in Yangtze Estuary and its adjacent waters, 7 sites were health, 2 sites were sub-health, 8 sites were fair, 8 sites were poor and 16 sites were very poor. An independent data set sampled in June of 2006 was used to validate the index, the results indicated that final combined index correctly classified 89% of stations in the validation data set.

  7. Fc-specific biotinylation of antibody using an engineered photoactivatable Z-Biotin and its biosensing application.

    PubMed

    Yang, Hong-Ming; Bao, Ru-Meng; Yu, Chang-Mei; Lv, Yan-Na; Zhang, Wei-Fen; Tang, Jin-Bao

    2017-01-01

    The development of a site-specific and covalent attachment methodology is crucial for antibody-biotin conjugates to preserve the antigen-binding ability of antibodies and yield homogeneous products. In this study, an engineered photoactivatable Z-domain variant [an UV-active amino acid benzoylphenylalanine (Bpa) was genetically incorporated into the Z-domain] carrying one biotin molecule (Z Bpa -Biotin) was prepared by employing aminoacyl-tRNA synthetase/suppressor tRNA and Avitag/BirA techniques. The site-specific and covalent attachment of IgG-biotin conjugates, viz. photo-biotinylated IgG, was successfully achieved after UV exposure by combining the inherent Fc-binding capability of the Z-domain with the formation of covalent bond by the photo-crosslinker. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis assay showed that more than 90% of IgGs conjugated with Z Bpa -Biotin molecules suffered 3 h UV irradiation. Further pepsin digestion analysis confirmed that the Z Bpa -Biotin was conjugated to the Fc fragment of IgG without interference. We took the tumor biomarker carcinoembryoic antigen (CEA) as model to evaluate the detection efficiency of the site-specific photo-biotinylated IgG in biosensing application using surface plasmon resonance (SPR) technology. The photo-biotinylated IgG coated surface gave a limit of detection (LOD) of 2 ng mL -1 , is 5-fold lower than that of the randomly NHS-biotinylated IgG (10 ng mL -1 ). Given that the (strept)avidin-biotin complex is extensively used in immunoassays, the proposed method for biotinylated IgG provides a powerful approach to further expand related applications. Copyright © 2016 Elsevier B.V. All rights reserved.

  8. An Index-Mismatch Scattering Approach to Optical Limiting

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Exarhos, Gregory J.; Ferris, Kim F.; Windisch, Charles F.

    A densely packed bed of alkaline earth fluoride particles percolated by a fluid medium has been investigated as a potential index-matched optical limiter in the spirit of a Christiansen-Shelyubskii filter. Marked optical limiting was observed through this transparent medium under conditions where the focused second-harmonic output of a Q-swtiched Nd: YAG laser was on the order of about 1 J/cm2. An open-aperture Z-scan technique was used to quantify the limiting behavior. In this case, the mechanism of optical limiting is thought to be a nonlinear shift in the fluid index of refraction, resulting in an index mismatch between the disparatemore » phases at high laser fluence.« less

  9. A critique of Theory Z.

    PubMed

    Sullivan, J J

    1983-01-01

    Ouchi's Theory Z prescribes how employees should be motivated for increased productivity. Based on the theoretical work of Emile Durkheim, it views the modern large corporation as a communal alternative to the shortcomings of other institutions in industrial mass society. Ouchi's assertion that Japan is the industrial society in which Theory Z has flourished received limited support from research findings. Moreover, Ouchi's grounding of the theory in humanistic management seem unwarranted.

  10. Third-order nonlinear optical properties of acid green 25 dye by Z-scan method

    NASA Astrophysics Data System (ADS)

    Jeyaram, S.; Geethakrishnan, T.

    2017-03-01

    Third-order nonlinear optical (NLO) properties of aqueous solutions of an anthraquinone dye (Acid green 25 dye, color index: 61570) have been studied by Z-scan method with a 5 mW continuous wave (CW) diode laser operating at 635 nm. The nonlinear refractive index (n2) and the absorption coefficient (β) have been evaluated respectively from the closed and open aperture Z-scan data and the values of these parameters are found to increase with increase in concentration of the dye solution. The negative sign of the observed nonlinear refractive index (n2) indicates that the aqueous solution of acid green 25 dye exhibits self-defocusing type optical nonlinearity. The mechanism of the observed nonlinear absorption (NLA) and nonlinear refraction (NLR) is attributed respectively to reverse saturable absorption (RSA) and thermal nonlinear effects. The magnitudes of n2 and β are found to be of the order of 10-7 cm2/W and 10-3 cm/W respectively. With these experimental results, the authors suggest that acid green 25 dye may have potential applications in nonlinear optics.

  11. Characterization of mussel H2A.Z.2: a new H2A.Z variant preferentially expressed in germinal tissues from Mytilus.

    PubMed

    Rivera-Casas, Ciro; González-Romero, Rodrigo; Vizoso-Vazquez, Ángel; Cheema, Manjinder S; Cerdán, M Esperanza; Méndez, Josefina; Ausió, Juan; Eirin-Lopez, Jose M

    2016-10-01

    Histones are the fundamental constituents of the eukaryotic chromatin, facilitating the physical organization of DNA in chromosomes and participating in the regulation of its metabolism. The H2A family displays the largest number of variants among core histones, including the renowned H2A.X, macroH2A, H2A.B (Bbd), and H2A.Z. This latter variant is especially interesting because of its regulatory role and its differentiation into 2 functionally divergent variants (H2A.Z.1 and H2A.Z.2), further specializing the structure and function of vertebrate chromatin. In the present work we describe, for the first time, the presence of a second H2A.Z variant (H2A.Z.2) in the genome of a non-vertebrate animal, the mussel Mytilus. The molecular and evolutionary characterization of mussel H2A.Z.1 and H2A.Z.2 histones is consistent with their functional specialization, supported on sequence divergence at promoter and coding regions as well as on varying gene expression patterns. More precisely, the expression of H2A.Z.2 transcripts in gonadal tissue and its potential upregulation in response to genotoxic stress might be mirroring the specialization of this variant in DNA repair. Overall, the findings presented in this work complement recent reports describing the widespread presence of other histone variants across eukaryotes, supporting an ancestral origin and conserved role for histone variants in chromatin.

  12. The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ alpha(ADAR1).

    PubMed

    Ha, Sung Chul; Choi, Jongkeun; Hwang, Hye-Yeon; Rich, Alexander; Kim, Yang-Gyun; Kim, Kyeong Kyu

    2009-02-01

    The Z-DNA conformation preferentially occurs at alternating purine-pyrimidine repeats, and is specifically recognized by Z alpha domains identified in several Z-DNA-binding proteins. The binding of Z alpha to foreign or chromosomal DNA in various sequence contexts is known to influence various biological functions, including the DNA-mediated innate immune response and transcriptional modulation of gene expression. For these reasons, understanding its binding mode and the conformational diversity of Z alpha bound Z-DNAs is of considerable importance. However, structural studies of Z alpha bound Z-DNA have been mostly limited to standard CG-repeat DNAs. Here, we have solved the crystal structures of three representative non-CG repeat DNAs, d(CACGTG)(2), d(CGTACG)(2) and d(CGGCCG)(2) complexed to hZ alpha(ADAR1) and compared those structures with that of hZ alpha(ADAR1)/d(CGCGCG)(2) and the Z alpha-free Z-DNAs. hZ alpha(ADAR1) bound to each of the three Z-DNAs showed a well conserved binding mode with very limited structural deviation irrespective of the DNA sequence, although varying numbers of residues were in contact with Z-DNA. Z-DNAs display less structural alterations in the Z alpha-bound state than in their free form, thereby suggesting that conformational diversities of Z-DNAs are restrained by the binding pocket of Z alpha. These data suggest that Z-DNAs are recognized by Z alpha through common conformational features regardless of the sequence and structural alterations.

  13. Concentric transmon qubit featuring fast tunability and site-selective Z coupling

    NASA Astrophysics Data System (ADS)

    Weides, Martin; Braumueller, Jochen; Sandberg, Martin; Vissers, Michael; Schneider, Andre; Schloer, Steffen; Gruenhaupt, Lukas; Rotzinger, Hannes; Marthaler, Michael; Lukashenko, Alexander; Dieter, Amadeus; Ustinov, Alexey; Pappas, David

    We present a planar qubit design based on a superconducting circuit that we call concentric transmon. While employing a simple fabrication process using Al evaporation and lift-off lithography, we observe qubit lifetimes and coherence times in the order of 10 μs. We systematically characterize loss channels such as incoherent dielectric loss, Purcell decay and radiative losses. The implementation of a gradiometric SQUID loop allows for a fast tuning of the qubit transition frequency and therefore for full tomographic control of the quantum circuit. The presented qubit design features a passive direct Z coupling between neighboring qubits, being a pending quest in the field of quantum simulation.

  14. An index of ecological integrity for the Mississippi alluvial plain ecoregion: index development and relations to selected landscape variables

    USGS Publications Warehouse

    Justus, B.G.

    2003-01-01

    Macroinvertebrate community, fish community, water-quality, and habitat data collected from 36 sites in the Mississippi Alluvial Plain Ecoregion during 1996-98 by the U.S. Geological Survey were considered for a multimetric test of ecological integrity. Test metrics were correlated to site scores of a Detrended Correspondence Analysis of the fish community (the biological community that was the most statistically significant for indicating ecological conditions in the ecoregion) and six metrics--four fish metrics, one chemical metric (total ammonia plus organic nitrogen) and one physical metric (turbidity)--having the highest correlations were selected for the index. Index results indicate that sites in the northern half of the study unit (in Arkansas and Missouri) were less degraded than sites in the southern half of the study unit (in Louisiana and Mississippi). Of 148 landscape variables evaluated, the percentage of Holocene deposits and cotton insecticide rates had the highest correlations to index of ecological integrity results. sites having the highest (best) index scores had the lowest percentages of Holocene deposits and the lowest cotton insecticide use rates, indicating that factors relating to the amount of Holocene deposits and cotton insecticide use rates partially explain differences in ecological conditions throughout the Mississippi Alluvial Plain Ecoregion.

  15. Recognition of Protein-coding Genes Based on Z-curve Algorithms

    PubMed Central

    -Biao Guo, Feng; Lin, Yan; -Ling Chen, Ling

    2014-01-01

    Recognition of protein-coding genes, a classical bioinformatics issue, is an absolutely needed step for annotating newly sequenced genomes. The Z-curve algorithm, as one of the most effective methods on this issue, has been successfully applied in annotating or re-annotating many genomes, including those of bacteria, archaea and viruses. Two Z-curve based ab initio gene-finding programs have been developed: ZCURVE (for bacteria and archaea) and ZCURVE_V (for viruses and phages). ZCURVE_C (for 57 bacteria) and Zfisher (for any bacterium) are web servers for re-annotation of bacterial and archaeal genomes. The above four tools can be used for genome annotation or re-annotation, either independently or combined with the other gene-finding programs. In addition to recognizing protein-coding genes and exons, Z-curve algorithms are also effective in recognizing promoters and translation start sites. Here, we summarize the applications of Z-curve algorithms in gene finding and genome annotation. PMID:24822027

  16. Nonlinear refractive index measurements and self-action effects in Roselle-Hibiscus Sabdariffa solutions

    NASA Astrophysics Data System (ADS)

    Henari, F. Z.; Al-Saie, A.

    2006-12-01

    We report the observation of self-action phenomena, such as self-focusing, self-defocusing, self-phase modulation and beam fanning in Roselle-Hibiscus Sabdariffa solutions. This material is found to be a new type of natural nonlinear media, and the nonlinear reflective index coefficient has been determined using a Z-scan technique and by measuring the critical power for the self-trapping effect. Z-scan measurements show that this material has a large negative nonlinear refractive index, n 2 = 1 × 10-4 esu. A comparison between the experimental n 2 values and the calculated thermal value for n 2 suggests that the major contribution to nonlinear response is of thermal origin.

  17. Estimating Douglas-fir site quality from aerial photographs.

    Treesearch

    Grover A. Choate

    1961-01-01

    This study investigated the feasibility of developing a technique for estimating site index of Douglas-fir in the Pacific Northwest, using aerial photos and topographic maps. Physiographic features were used as indicators of site index. Analysis showed that although most of the features were highly significant as criteria for predicting site index, they explained less...

  18. PTSITE--a new method of site evaluation for loblolly pine: model development and user's guide

    Treesearch

    Constance A. Harrington

    1991-01-01

    A model, named PTSITE, was developed to predict site index for loblolly pine based on soil characteristics, site location on the landscape, and land history. The model was tested with data from several sources and judged to predict site index within + 4 feet (P

  19. How To Succeed in Promoting Your Web Site: The Impact of Search Engine Registration on Retrieval of a World Wide Web Site.

    ERIC Educational Resources Information Center

    Tunender, Heather; Ervin, Jane

    1998-01-01

    Character strings were planted in a World Wide Web site (Project Whistlestop) to test indexing and retrieval rates of five Web search tools (Lycos, infoseek, AltaVista, Yahoo, Excite). It was found that search tools indexed few of the planted character strings, none indexed the META descriptor tag, and only Excite indexed into the 3rd-4th site…

  20. WHAT ARE THE Omh {sup 2} ( z {sub 1}, z {sub 2}) AND Om ( z {sub 1}, z {sub 2}) DIAGNOSTICS TELLING US IN LIGHT OF H ( z ) DATA?

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Zheng, Xiaogang; Ding, Xuheng; Biesiada, Marek

    2016-07-01

    The two-point diagnostics Om ( z {sub i} , z {sub j} ) and Omh {sup 2}( z {sub i} , z {sub j} ) have been introduced as an interesting tool for testing the validity of the Λ cold dark matter (ΛCDM) model. Recently, Sahni et al. combined two independent measurements of H ( z ) from baryon acoustic oscillation (BAO) data with the value of the Hubble constant H {sub 0}, and used the second of these diagnostics to test the ΛCDM (a constant equation-of-state parameter for dark energy) model. Their result indicated a considerable tension between observationsmore » and predictions of the ΛCDM model. Since reliable data concerning the expansion rates of the universe at different redshifts H ( z ) are crucial for the successful application of this method, we investigate both two-point diagnostics on the most comprehensive set of N = 36 measurements of H ( z ) from BAOs and the differential ages (DAs) of passively evolving galaxies. We discuss the uncertainties of the two-point diagnostics and find that they are strongly non-Gaussian and follow the patterns deeply rooted in their very construction. Therefore we propose that non-parametric median statistics is the most appropriate way of treating this problem. Our results support the claims that ΛCDM is in tension with H ( z ) data according to the two-point diagnostics developed by Shafieloo, Sahni, and Starobinsky. However, other alternatives to the ΛCDM model, such as the wCDM or Chevalier–Polarski–Linder models, perform even worse. We also note that there are serious systematic differences between the BAO and DA methods that ought to be better understood before H ( z ) measurements can compete with other probes methods.« less

  1. A fluorescence anisotropy assay to discover and characterize ligands targeting the maytansine site of tubulin.

    PubMed

    Menchon, Grégory; Prota, Andrea E; Lucena-Agell, Daniel; Bucher, Pascal; Jansen, Rolf; Irschik, Herbert; Müller, Rolf; Paterson, Ian; Díaz, J Fernando; Altmann, Karl-Heinz; Steinmetz, Michel O

    2018-05-29

    Microtubule-targeting agents (MTAs) like taxol and vinblastine are among the most successful chemotherapeutic drugs against cancer. Here, we describe a fluorescence anisotropy-based assay that specifically probes for ligands targeting the recently discovered maytansine site of tubulin. Using this assay, we have determined the dissociation constants of known maytansine site ligands, including the pharmacologically active degradation product of the clinical antibody-drug conjugate trastuzumab emtansine. In addition, we discovered that the two natural products spongistatin-1 and disorazole Z with established cellular potency bind to the maytansine site on β-tubulin. The high-resolution crystal structures of spongistatin-1 and disorazole Z in complex with tubulin allowed the definition of an additional sub-site adjacent to the pocket shared by all maytansine-site ligands, which could be exploitable as a distinct, separate target site for small molecules. Our study provides a basis for the discovery and development of next-generation MTAs for the treatment of cancer.

  2. PPSITE - A New Method of Site Evaluation for Longleaf Pine: Model Development and User's Guide

    Treesearch

    Constance A. Harrington

    1990-01-01

    A model was developed to predict site index (base age 50 years) for longleaf pine (Pinus palustris Mill.). The model, named PPSITE, was based on soil characteristics, site location on the landscape, and land history. The model was constrained so that the relationship between site index and each soil-site variable was consistent with what was known...

  3. MRI-Derived Cellularity Index as a Potential Noninvasive Imaging Biomarker of Prostate Cancer

    DTIC Science & Technology

    2016-12-01

    whole mount pathology sections. Analysis of these UCLA data resulted in four published manuscripts (White et al, Cancer Research 2014; Rakow-Penner...Yamin et al., Clinical Cancer Research , 2016) RSI-MRI mean z-score grouped by pathologic Gleason grade. Mean RSI-MRI cellularity index represented as...Figure 2). A quantitative validation of this approach is now provided in this study. Specifically, in a group of patients with known PCa, ROC

  4. Site classification for northern forest species

    Treesearch

    Willard H. Carmean

    1977-01-01

    Summarizes the extensive literature for northern forest species covering site index curves, site index species comparisons, growth intercepts, soil-site studies, plant indicators, physiographic site classifications, and soil survey studies. The advantages and disadvantages of each are discussed, and suggestions are made for future research using each of these methods....

  5. Photochemical Reflectance Index (PRI) as a proxy of Light Use Efficiency (LUE) and transpiration in Mediterranean crop sites

    NASA Astrophysics Data System (ADS)

    LE Dantec, V.; Chebbi, W.; Boulet, G.; Merlin, O.; Lili-Chabaane, Z.; Er Raki, S.; Ceschia, E.; Khabba, S.; Fanise, P.; Zawilski, B.; Simonneaux, V.; Jarlan, L.

    2016-12-01

    The Photochemical Reflectance Index (PRI) is based on the short term reversible xanthophyll pigment changes accompanying plant stress and therefore of the associated photosynthetic activities. Strong relationships between PRI and Light Use Efficiency (LUE) were shown at leaf and canopy scales and over a wide range of species (Garbulsky et al., 2011). But very few previous works have explored the potential link with plant water status. In this study, we have first analyzed the link between PRI and LUE at canopy scale on two different crops in terms of canopy structure and crop management: olive grove (Tunisia) and wheat grown under different water regimes (irrigated or rainfed) and climate zones (France, Morocco). We have investigated the daily and seasonal dynamics of PRI; linking its variations to meteorological factors (global radiation and sun angle effects, soil water content, relative air humidity …) and plant processes. The highest correlations were mainly observed in clear skies conditions. We have found, whatever site, linear negative relationships between PRI and LUE using data acquired in midday (i.e. in solar zenithal angle condition). Linear link between PRI and sapflow measurements was also revealed. This correlation was obtained over periods characterized by a moderate soil water deficit, i.e. by when transpiration rate was mainly control by Vapor Pressure Deficit. We will then briefly presented alternative and complementary approaches to this index, to detect different level of water stress using thermal infrared emissions.

  6. ZapE Is a Novel Cell Division Protein Interacting with FtsZ and Modulating the Z-Ring Dynamics

    PubMed Central

    Marteyn, Benoit S.; Karimova, Gouzel; Fenton, Andrew K.; Gazi, Anastasia D.; West, Nicholas; Touqui, Lhousseine; Prevost, Marie-Christine; Betton, Jean-Michel; Poyraz, Oemer; Ladant, Daniel; Gerdes, Kenn; Sansonetti, Philippe J.; Tang, Christoph M.

    2014-01-01

    ABSTRACT Bacterial cell division requires the formation of a mature divisome complex positioned at the midcell. The localization of the divisome complex is determined by the correct positioning, assembly, and constriction of the FtsZ ring (Z-ring). Z-ring constriction control remains poorly understood and (to some extent) controversial, probably due to the fact that this phenomenon is transient and controlled by numerous factors. Here, we characterize ZapE, a novel ATPase found in Gram-negative bacteria, which is required for growth under conditions of low oxygen, while loss of zapE results in temperature-dependent elongation of cell shape. We found that ZapE is recruited to the Z-ring during late stages of the cell division process and correlates with constriction of the Z-ring. Overexpression or inactivation of zapE leads to elongation of Escherichia coli and affects the dynamics of the Z-ring during division. In vitro, ZapE destabilizes FtsZ polymers in an ATP-dependent manner. PMID:24595368

  7. Africa's largest long-lasting insecticide-treated net producer: lessons from A to Z Textiles.

    PubMed

    Masum, Hassan; Shah, Ronak; Schroeder, Karl; Daar, Abdallah S; Singer, Peter A

    2010-12-13

    Field trials have demonstrated the efficacy of insecticide-treated nets, and the WHO has recently endorsed a shift toward Long-Lasting Insecticide Treated nets (LLINs) due to factors such as reduced distribution costs. However, the need for LLINs poses several challenges. Is it possible to manufacture LLINs in large quantities in the African continent, where malaria is most endemic? When production is located in low-income countries, what role is played by local funding and employment, scaling up manufacturing, and partnerships? What factors influence availability and pricing? A case study of A to Z Textiles was undertaken to answer the question of how large-scale production of LLINs can occur in a low income setting. One of the largest sources of bed nets for Africa, A to Z Textiles is Africa-based, and its Tanzanian operations have a production capacity of 30 million LLINs per year, along with full WHO recommendation for its nets. Our analysis is based on semi-structured interviews with key informants familiar with A to Z, site visits in Tanzania, and literature reviews.This paper discusses the history and current status of A to Z Textiles, identifies the factors that led to its success, and suggests policy considerations that could support similar initiatives in the future. Local funding, scaling up manufacturing, technology transfer, and partnerships all played important roles in A to Z's ascent, as did perceived benefits of local employment and capacity-building. Regulatory issues and procurement rules acted as barriers. A to Z cost-effectively manufactures high-quality LLINs where malaria is most endemic. With a production capacity of 30 million LLINs per year, and full WHOPES (WHO Pesticide Evaluation Scheme) certification, A to Z Textiles demonstrates how key health goods can be successfully produced in the low-income countries that use them. Its example may be instructive and of high interest to readers in the malaria community, especially in developing

  8. A rare eicosanoid precursor analogue, sciadonic acid (5Z,11Z,14Z-20:3), detected in vivo in hormone positive breast cancer tissue.

    PubMed

    Park, H G; Zhang, J Y; Foster, C; Sudilovsky, D; Schwed, D A; Mecenas, J; Devapatla, S; Lawrence, P; Kothapalli, K S D; Brenna, J T

    2018-07-01

    Numerous genetic alterations of HSA 11q13 are found frequently in several cancer types, including breast cancer (BC). The 11q13 locus harbors FADS2 encoding Δ6 desaturation which is not functional in several cancer cell lines, including hormone positive MCF7 BC cells. In vitro, the non-functional FADS2 activity unmasks 18:2n-6 elongation to 20:2n-6 and Δ5 desaturation by FADS1 to yield 5Z,11Z,14Z-20:3 (sciadonic acid) rather than 5Z,8Z,11Z,14Z-20:4 (arachidonic acid). In this pilot study we aimed to determine whether 5,11,14-20:3 appears in vivo in hormone positive human BC tissue. Fatty acids were profiled in surgically removed human breast tumor and adjacent normal tissue (n = 9). Sciadonic acid was detected in three of nine breast tumor samples and was below detect limits in normal breast tissue. The internal Δ8 double bond of arachidonic acid is required for normal eicosanoid synthesis but is missing in sciadonic acid. This pilot study demonstrates for the first time in vivo sciadonic acid in hormone positive BC tissue, warranting a larger survey study to further evaluate its appearance and the functional implications. Copyright © 2018. Published by Elsevier Ltd.

  9. Crystal structure analysis, covalent docking, and molecular dynamics calculations reveal a conformational switch in PhaZ7 PHB depolymerase.

    PubMed

    Kellici, Tahsin F; Mavromoustakos, Thomas; Jendrossek, Dieter; Papageorgiou, Anastassios C

    2017-07-01

    An open and a closed conformation of a surface loop in PhaZ7 extracellular poly(3-hydroxybutyrate) depolymerase were identified in two high-resolution crystal structures of a PhaZ7 Y105E mutant. Molecular dynamics (MD) simulations revealed high root mean square fluctuations (RMSF) of the 281-295 loop, in particular at residue Asp289 (RMSF 7.62 Å). Covalent docking between a 3-hydroxybutyric acid trimer and the catalytic residue Ser136 showed that the binding energy of the substrate is significantly more favorable in the open loop conformation compared to that in the closed loop conformation. MD simulations with the substrate covalently bound depicted 1 Å RMSF higher values for the residues 281-295 in comparison to the apo (substrate-free) form. In addition, the presence of the substrate in the active site enhanced the ability of the loop to adopt a closed form. Taken together, the analysis suggests that the flexible loop 281-295 of PhaZ7 depolymerase can act as a lid domain to control substrate access to the active site of the enzyme. Proteins 2017; 85:1351-1361. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  10. Ordering of Z-numbers

    NASA Astrophysics Data System (ADS)

    Mohamad, Daud; Shaharani, Saidatull Akma; Kamis, Nor Hanimah

    2017-08-01

    The concept of Z-number which was introduced by Zadeh in 2010 has captured attention by many due to its enormous applications in the area of Computing with Words (CWW). A Z-number is an ordered pair of fuzzy numbers, (A, R), where A essentially plays the role of fuzzy restriction which is a real-valued uncertain variable and R is a measure of reliability of the first component. Besides its theoretical development, Z-numbers have been successfully applied to decision making problems under uncertain environment. In any decision making evaluation using Z-number, ideally the final outcome of the calculation should also be in Z-number. A question will arise: how do we order the Z-numbers so that the preference of the alternatives can be ranked appropriately? In this paper, we propose a method of ordering the Z-number via the transformation of the Z-numbers to fuzzy numbers. The Z-number will then be ranked using a ranking fuzzy number method. The proposed method will be tested in several combinations of Z-numbers to investigate its effectiveness. The effect of different values of A and R towards the ordering of Z-numbers is analyzed and discussed.

  11. A proposed site index for red spruce in the Northeast

    Treesearch

    T. F. McLintock; C. A. Bickford

    1957-01-01

    A basic principle that should be recognized at the start of any forward-looking forest-management plan is that the intensity or level of management that can be profitably applied to a given tract will be controlled largely by four factors: markets, labor supply, accessibility, and site. The more favorable these factors are, the higher the intensity of management that...

  12. Structure of the Z Ring-associated Protein, ZapD, Bound to the C-terminal Domain of the Tubulin-like Protein, FtsZ, Suggests Mechanism of Z Ring Stabilization through FtsZ Cross-linking.

    PubMed

    Schumacher, Maria A; Huang, Kuo-Hsiang; Zeng, Wenjie; Janakiraman, Anuradha

    2017-03-03

    Cell division in most bacteria is mediated by the tubulin-like FtsZ protein, which polymerizes in a GTP-dependent manner to form the cytokinetic Z ring. A diverse repertoire of FtsZ-binding proteins affects FtsZ localization and polymerization to ensure correct Z ring formation. Many of these proteins bind the C-terminal domain (CTD) of FtsZ, which serves as a hub for FtsZ regulation. FtsZ ring-associated proteins, ZapA-D (Zaps), are important FtsZ regulatory proteins that stabilize FtsZ assembly and enhance Z ring formation by increasing lateral assembly of FtsZ protofilaments, which then form the Z ring. There are no structures of a Zap protein bound to FtsZ; therefore, how these proteins affect FtsZ polymerization has been unclear. Recent data showed ZapD binds specifically to the FtsZ CTD. Thus, to obtain insight into the ZapD-CTD interaction and how it may mediate FtsZ protofilament assembly, we determined the Escherichia coli ZapD-FtsZ CTD structure to 2.67 Å resolution. The structure shows that the CTD docks within a hydrophobic cleft in the ZapD helical domain and adopts an unusual structure composed of two turns of helix separated by a proline kink. FtsZ CTD residue Phe-377 inserts into the ZapD pocket, anchoring the CTD in place and permitting hydrophobic contacts between FtsZ residues Ile-374, Pro-375, and Leu-378 with ZapD residues Leu-74, Trp-77, Leu-91, and Leu-174. The structural findings were supported by mutagenesis coupled with biochemical and in vivo studies. The combined data suggest that ZapD acts as a molecular cross-linking reagent between FtsZ protofilaments to enhance FtsZ assembly. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  13. Stream-profile analysis and stream-gradient index

    USGS Publications Warehouse

    Hack, John T.

    1973-01-01

    The generally regular three-dimensional geometry of drainage networks is the basis for a simple method of terrain analysis providing clues to bedrock conditions and other factors that determine topographic forms. On a reach of any stream, a gradient-index value can be obtained which allows meaningful comparisons of channel slope on streams of different sizes. The index is believed to reflect stream power or competence and is simply the product of the channel slope at a point and channel length measured along the longest stream above the pointwhere the calculation is made. In an adjusted topography, changes in gradient-index values along a stream generally correspond to differences in bedrock or introduced load. In any landscape the gradient index of a stream is related to total relief and stream regimen. Thus, climate, tectonic events, and geomorphic history must be considered in using the gradient index. Gradient-index values can be obtained quickly by simple measurements on topographic maps, or they can be obtained by more sophisticated photogrammetric measurements that involve simple computer calculations from x, y, z coordinates.

  14. Seasonal and Diel Vocalization Patterns of Antarctic Blue Whale (Balaenoptera musculus intermedia) in the Southern Indian Ocean: A Multi-Year and Multi-Site Study.

    PubMed

    Leroy, Emmanuelle C; Samaran, Flore; Bonnel, Julien; Royer, Jean-Yves

    2016-01-01

    Passive acoustic monitoring is an efficient way to provide insights on the ecology of large whales. This approach allows for long-term and species-specific monitoring over large areas. In this study, we examined six years (2010 to 2015) of continuous acoustic recordings at up to seven different locations in the Central and Southern Indian Basin to assess the peak periods of presence, seasonality and migration movements of Antarctic blue whales (Balaenoptera musculus intermedia). An automated method is used to detect the Antarctic blue whale stereotyped call, known as Z-call. Detection results are analyzed in terms of distribution, seasonal presence and diel pattern of emission at each site. Z-calls are detected year-round at each site, except for one located in the equatorial Indian Ocean, and display highly seasonal distribution. This seasonality is stable across years for every site, but varies between sites. Z-calls are mainly detected during autumn and spring at the subantarctic locations, suggesting that these sites are on the Antarctic blue whale migration routes, and mostly during winter at the subtropical sites. In addition to these seasonal trends, there is a significant diel pattern in Z-call emission, with more Z-calls in daytime than in nighttime. This diel pattern may be related to the blue whale feeding ecology.

  15. Assessment of groundwater quality at a MSW landfill site using standard and AHP based water quality index: a case study from Ranchi, Jharkhand, India.

    PubMed

    Chakraborty, Shubhrasekhar; Kumar, R Naresh

    2016-06-01

    Landfill leachate generated from open MSW dumpsite can cause groundwater contamination. The impact of open dumping of MSW on the groundwater of adjacent area was studied. To assess the spatial and temporal variations in groundwater quality, samples were collected around an open MSW dumping site in Ranchi city, Jharkhand, India. Groundwater samples were analysed for various physicochemical and bacteriological parameters for 1 year. Results indicated that the groundwater is getting contaminated due to vertical and horizontal migration of landfill leachate. Extent of contamination was higher in areas closer to the landfill as indicated by high alkalinity, total dissolved solids and ammonia concentration. Metals such as lead, iron, and manganese were present at concentrations of 0.097, 0.97 and 0.36 mg/L, respectively exceeding the Bureau of Indian Standards (BIS) 10,500 for drinking water. Enterobacteriaceae were also detected in several groundwater samples and highest coliform count of 2.1×10(4) CFU/mL was recorded from a dug well. In order to determine the overall groundwater quality, water quality index (WQI) was calculated using weighted arithmetic index method and this index was further modified by coupling with the analytical hierarchy process (AHP) to get specific information. WQI values indicated that the overall groundwater quality of the region came under "poor" category while zone wise classification indicated the extent of impact of landfill leachate on groundwater.

  16. Genomic localization of the Z/EG transgene in the mouse genome.

    PubMed

    Colombo, Sophie; Kumasaka, Mayuko; Lobe, Corrinne; Larue, Lionel

    2010-02-01

    The Z/EG transgenic mouse line, produced by Novak et al., displays tissue-specific EGFP expression after Cre-mediated recombination. The autofluorescence of EGFP allows the visualization of cells of interest displaying Cre recombination. The initial construct was designed such that cells without Cre recombination express the beta-galactosidase marker, facilitating counterselection. We used inverse PCR to identify the site of integration of the Z/EG transgene, to improve the efficiency of homozygous Z/EG mouse production. Recombined cells produced large amounts of EGFP protein, resulting in higher levels of fluorescence and therefore greater contrast with nonrecombined cells. We mapped the transgene to the G1 region of chromosome 5. This random insertion was found to have occurred 230-bp upstream from the start codon of the Rasa4 gene. The insertion of the Z/EG transgene in the C57BL/6 genetic background had no effect on Rasa4 expression. Homozygous Z/EG mice therefore had no obvious phenotype. (c) 2009 Wiley-Liss, Inc.

  17. The microtubule motor protein KIF13A is involved in intracellular trafficking of the Lassa virus matrix protein Z.

    PubMed

    Fehling, Sarah Katharina; Noda, Takeshi; Maisner, Andrea; Lamp, Boris; Conzelmann, Karl-Klaus; Kawaoka, Yoshihiro; Klenk, Hans-Dieter; Garten, Wolfgang; Strecker, Thomas

    2013-02-01

    The small matrix protein Z of arenaviruses has been identified as the main driving force to promote viral particle production at the plasma membrane. Although multiple functions of Z in the arenaviral life cycle have been uncovered, the mechanism of intracellular transport of Z to the site of virus budding is poorly understood and cellular motor proteins that mediate Z trafficking remain to be identified. In the present study, we report that the Z protein of the Old World arenavirus Lassa virus (LASV) interacts with the kinesin family member 13A (KIF13A), a plus-end-directed microtubule-dependent motor protein. Plasmid-driven overexpression of KIF13A results in relocalization of Z to the cell periphery, while functional blockage of endogenous KIF13A by overexpression of a dominant-negative mutant or KIF13A-specific siRNA causes a perinuclearaccumulation and decreased production of both Z-induced virus-like particles and infectious LASV. The interaction of KIF13A with Z proteins from both Old and New World arenaviruses suggests a conserved intracellular transport mechanism. In contrast, the intracellular distribution of the matrix proteins of prototypic members of the paramyxo- and rhabdovirus family is independent of KIF13A. In summary, our studies identify for the first time a molecular motor protein as a critical mediator for intracellular microtubule-dependent transport of arenavirus matrix proteins. © 2012 Blackwell Publishing Ltd.

  18. A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L Polymerase and Z Stability in Cells Harboring an Active Viral Ribonucleoprotein.

    PubMed

    Iwasaki, Masaharu; de la Torre, Juan C

    2018-06-01

    Mammarenaviruses cause chronic infections in their natural rodent hosts. Infected rodents shed infectious virus into excreta. Humans are infected through mucosal exposure to aerosols or direct contact of abraded skin with fomites, resulting in a wide range of manifestations from asymptomatic or mild febrile illness to severe life-threatening hemorrhagic fever. The mammarenavirus matrix Z protein has been shown to be a main driving force of virus budding and to act as a negative regulator of viral RNA synthesis. To gain a better understanding of how the Z protein exerts its several different functions, we investigated the interaction between Z and viral polymerase L protein using the prototypic mammarenavirus, lymphocytic choriomeningitis virus (LCMV). We found that in the presence of an active viral ribonucleoprotein (vRNP), the Z protein translocated from nonionic detergent-resistant, membrane-rich structures to a subcellular compartment with a different membrane composition susceptible to disruption by nonionic detergents. Alanine (A) substitution of a highly conserved leucine (L) at position 72 in LCMV Z protein abrogated Z-L interaction. The L72A mutation did not affect the stability or budding activity of Z when expressed alone, but in the presence of an active vRNP, mutation L72A promoted rapid degradation of Z via a proteasome- and lysosome-independent pathway. Accordingly, L72A mutation in the Z protein resulted in nonviable LCMV. Our findings have uncovered novel aspects of the dynamics of the Z protein for which a highly conserved L residue was strictly required. IMPORTANCE Several mammarenaviruses, chiefly Lassa virus (LASV), cause hemorrhagic fever disease in humans and pose important public health concerns in their regions of endemicity. Moreover, mounting evidence indicates that the worldwide-distributed, prototypic mammarenavirus, lymphocytic choriomeningitis virus (LCMV), is a neglected human pathogen of clinical significance. The mammarenavirus

  19. 21 CFR 516.157 - Publication of the index and content of an index listing.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 6 2010-04-01 2010-04-01 false Publication of the index and content of an index listing. 516.157 Section 516.157 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND... available through the FDA Web site. A printed copy can be obtained by writing to the FDA Freedom of...

  20. Damped and sub-damped Lyman-α absorbers in z > 4 QSOs

    NASA Astrophysics Data System (ADS)

    Guimarães, R.; Petitjean, P.; de Carvalho, R. R.; Djorgovski, S. G.; Noterdaeme, P.; Castro, S.; Poppe, P. C. Da R.; Aghaee, A.

    2009-12-01

    We present the results of a survey of damped (DLA, log~N(H i)>20.3) and sub-damped Lyman-α systems (19.5 z>2.55 along the lines-of-sight to 77 quasars with emission redshifts in the range 4<z_em<6.3. Intermediate resolution (R˜4300) spectra were obtained with the Echellette Spectrograph and Imager (ESI) mounted on the Keck telescope. A total of 100 systems with log N(H i)>19.5 were detected of which 40 systems are damped Lyman-α systems for an absorption length of Δ X = 378. About half of the lines of sight of this homogeneous survey have never been investigated for DLAs. We study the evolution with redshift of the cosmological density of the neutral gas and find, consistent with previous studies at similar resolution, that ΩDLA, H_I decreases at z>3.5. The overall cosmological evolution of Ω_HI shows a peak around this redshift. The H i column density distribution for log N(H i)≥20.3 is fitted, consistent with previous surveys, with a single power-law of index α ˜ -1.8 ±0.25. This power-law overpredicts data at the high-end and a second, much steeper, power-law (or a gamma function) is needed. There is a flattening of the function at lower H i column densities with an index of α ˜ -1.4 for the column density range log N(H i)=19.5-21. The fraction of H i mass in sub-DLAs is of the order of 30%. The H i column density distribution does not evolve strongly from z˜ 2.5 to z˜ 4.5. The observations reported here were obtained with the W. M. Keck Observatory, which is operated by the California Association for Research in Astronomy, a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. Tables 1, 2 and Appendices are only available in electronic form at http://www.aanda.org

  1. Characterization, validation and intercomparison of clumping index maps from POLDER, MODIS, and MISR satellite data over reference sites

    NASA Astrophysics Data System (ADS)

    Pisek, Jan; He, Liming; Chen, Jing; Govind, Ajit; Sprintsin, Michael; Ryu, Youngryel; Arndt, Stefan; Hocking, Darren; Wardlaw, Timothy; Kuusk, Joel; Oliphant, Andrew; Korhonen, Lauri; Fang, Hongliang; Matteucci, Giorgio; Longdoz, Bernard; Raabe, Kairi

    2015-04-01

    Vegetation foliage clumping significantly alters its radiation environment and therefore affects vegetation growth as well as water and carbon cycles. The clumping index is useful in ecological and meteorological models because it provides new structural information in addition to the effective leaf area index (LAI) retrieved from mono-angle remote sensing and allows accurate separation of sunlit and shaded leaves in the canopy. Not accounting for the foliage clumping in LAI retrieval algorithms leads to substantial underestimation of actual LAI, especially for needleleaf forests. Normalized Difference between Hotspot and Darkspot (NDHD) index has been previously used to retrieve global clumping index maps from POLarization and Directionality of the Earth's Reflectances (POLDER) data at ~6 km resolution, from Moderate Resolution Imaging Spectroradiometer (MODIS) Bidirectional Reflectance Distribution Function (BRDF) product at 500 m resolution. Most recently the algorithm was applied with Multi-angle Imaging SpectroRadiometer (MISR) data at 275 m resolution over selected areas. In this presentation we characterize and intercompare the three products over a set of sites representing diverse biomes and different canopy structures. The products are also directly validated with both in-situ vertical profiles and seasonal trajectories of clumping index. We illustrate that the vertical distribution of foliage and especially the effect of understory needs to be taken into account while validating foliage clumping products from remote sensing products with values measured in the field. Satellite measurements respond to the structural effects near the top of canopies, while ground measurements may be biased by the lower vegetation layers. Additionally, caution should be taken regarding the misclassification in land cover maps as their errors can be propagated into the foliage clumping maps. Our results indicate that MODIS data and MISR data with 275 m in particular can

  2. Characterization, Validation and Intercomparison of Clumping Index Maps from POLDER, MODIS, and MISR Satellite Data Over Reference Sites

    NASA Astrophysics Data System (ADS)

    Pisek, J.; He, L.; Chen, J. M.; Govind, A.; Sprintsin, M.; Ryu, Y.; Arndt, S. K.; Hocking, D.; Wardlaw, T.; Kuusk, J.; Oliphant, A. J.; Korhonen, L.; Fang, H.; Matteucci, G.; Longdoz, B.; Raabe, K.

    2015-12-01

    Vegetation foliage clumping significantly alters its radiation environment and therefore affects vegetation growth as well as water and carbon cycles. The clumping index is useful in ecological and meteorological models because it provides new structural information in addition to the effective leaf area index (LAI) retrieved from mono-angle remote sensing and allows accurate separation of sunlit and shaded leaves in the canopy. Not accounting for the foliage clumping in LAI retrieval algorithms leads to substantial underestimation of actual LAI, especially for needleleaf forests. Normalized Difference between Hotspot and Darkspot (NDHD) index has been previously used to retrieve global clumping index maps from POLarization and Directionality of the Earth's Reflectances (POLDER) data at ~6 km resolution, from Moderate Resolution Imaging Spectroradiometer (MODIS) Bidirectional Reflectance Distribution Function (BRDF) product at 500 m resolution. Most recently the algorithm was applied with Multi-angle Imaging SpectroRadiometer (MISR) data at 275 m resolution over selected areas. In this presentation we characterize and intercompare the three products over a set of sites representing diverse biomes and different canopy structures. The products are also directly validated with both in-situ vertical profiles and seasonal trajectories of clumping index. We illustrate that the vertical distribution of foliage and especially the effect of understory needs to be taken into account while validating foliage clumping products from remote sensing products with values measured in the field. Satellite measurements respond to the structural effects near the top of canopies, while ground measurements may be biased by the lower vegetation layers. Additionally, caution should be taken regarding the misclassification in land cover maps as their errors can be propagated into the foliage clumping maps. Our results indicate that MODIS data and MISR data with 275 m resolution in

  3. The Z {yields} cc-bar {yields} {gamma}{gamma}*, Z {yields} bb-bar {yields} {gamma}{gamma}* triangle diagrams and the Z {yields} {gamma}{psi}, Z {yields} {gamma}Y decays

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Achasov, N. N., E-mail: achasov@math.nsc.ru

    2011-03-15

    The approach to the Z {yields} {gamma}{psi} and Z {yields} {gamma}Y decay study is presented in detail, based on the sum rules for the Z {yields} cc-bar {yields} {gamma}{gamma}* and Z {yields} bb-bar {yields} {gamma}{gamma}* amplitudes and their derivatives. The branching ratios of the Z {yields} {gamma}{psi} and Z {yields} {gamma}Y decays are calculated for different hypotheses on saturation of the sum rules. The lower bounds of {Sigma}{sub {psi}} BR(Z {yields} {gamma}{psi}) = 1.95 Multiplication-Sign 10{sup -7} and {Sigma}{sub {upsilon}} BR(Z {yields} {gamma}Y) = 7.23 Multiplication-Sign 10{sup -7} are found. Deviations from the lower bounds are discussed, including the possibilitymore » of BR(Z {yields} {gamma}J/{psi}(1S)) {approx} BR(Z {yields} {gamma}Y(1S)) {approx} 10{sup -6}, that could be probably measured in LHC. The angular distributions in the Z {yields} {gamma}{psi} and Z {yields} {gamma}Y decays are also calculated.« less

  4. AmrZ Beta-Sheet Residues Are Essential for DNA Binding and Transcriptional Control of Pseudomonas aeruginosa Virulence Genes ▿ †

    PubMed Central

    Waligora, Elizabeth A.; Ramsey, Deborah M.; Pryor, Edward E.; Lu, Haiping; Hollis, Thomas; Sloan, Gina P.; Deora, Rajendar; Wozniak, Daniel J.

    2010-01-01

    AmrZ is a putative ribbon-helix-helix (RHH) transcriptional regulator. RHH proteins utilize residues within the β-sheet for DNA binding, while the α-helices promote oligomerization. AmrZ is of interest due to its dual roles as a transcriptional activator and as a repressor, regulating genes encoding virulence factors associated with both chronic and acute Pseudomonas aeruginosa infection. In this study, cross-linking revealed that AmrZ forms oligomers in solution but that the amino terminus, containing an unordered region and a β-sheet, were not required for oligomerization. The first 12 unordered residues (extended amino terminus) contributed minimally to DNA binding. Mutagenesis of the AmrZ β-sheet demonstrated that residues 18, 20, and 22 were essential for DNA binding at both activation and repressor sites, suggesting that AmrZ utilizes a similar mechanism for binding to these sites. Mice infected with amrZ mutants exhibited reduced bacterial burden, morbidity, and mortality. Direct in vivo competition assays showed a 5-fold competitive advantage for the wild type over an isogenic amrZ mutant. Finally, the reduced infection phenotype of the amrZ-null strain was similar to that of a strain expressing a DNA-binding-deficient AmrZ variant, indicating that DNA binding and transcriptional regulation by AmrZ is responsible for the in vivo virulence defect. These recent infection data, along with previously identified AmrZ-regulated virulence factors, suggest the necessity of AmrZ transcriptional regulation for optimal virulence during acute infection. PMID:20709902

  5. Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae

    PubMed Central

    Göpel, Yvonne; Lüttmann, Denise; Heroven, Ann Kathrin; Reichenbach, Birte; Dersch, Petra; Görke, Boris

    2011-01-01

    Small RNAs GlmY and GlmZ compose a cascade that feedback-regulates synthesis of enzyme GlmS in Enterobacteriaceae. Here, we analyzed the transcriptional regulation of glmY/glmZ from Yersinia pseudotuberculosis, Salmonella typhimurium and Escherichia coli, as representatives for other enterobacterial species, which exhibit similar promoter architectures. The GlmY and GlmZ sRNAs of Y. pseudotuberculosis are transcribed from σ54-promoters that require activation by the response regulator GlrR through binding to three conserved sites located upstream of the promoters. This also applies to glmY/glmZ of S. typhimurium and glmY of E. coli, but as a difference additional σ70-promoters overlap the σ54-promoters and initiate transcription at the same site. In contrast, E. coli glmZ is transcribed from a single σ70-promoter. Thus, transcription of glmY and glmZ is controlled by σ54 and the two-component system GlrR/GlrK (QseF/QseE) in Y. pseudotuberculosis and presumably in many other Enterobacteria. However, in a subset of species such as E. coli this relationship is partially lost in favor of σ70-dependent transcription. In addition, we show that activity of the σ54-promoter of E. coli glmY requires binding of the integration host factor to sites upstream of the promoter. Finally, evidence is provided that phosphorylation of GlrR increases its activity and thereby sRNA expression. PMID:20965974

  6. Negatively supercoiled simian virus 40 DNA contains Z-DNA segments within transcriptional enhancer sequences

    NASA Technical Reports Server (NTRS)

    Nordheim, A.; Rich, A.

    1983-01-01

    Three 8-base pair (bp) segments of alternating purine-pyrimidine from the simian virus 40 enhancer region form Z-DNA on negative supercoiling; minichromosome DNase I-hypersensitive sites determined by others bracket these three segments. A survey of transcriptional enhancer sequences reveals a pattern of potential Z-DNA-forming regions which occur in pairs 50-80 bp apart. This may influence local chromatin structure and may be related to transcriptional activation.

  7. Continuum in the X-Z---Y weak bonds: Z= main group elements.

    PubMed

    Joy, Jyothish; Jose, Anex; Jemmis, Eluvathingal D

    2016-01-15

    The Continuum in the variation of the X-Z bond length change from blue-shifting to red-shifting through zero- shifting in the X-Z---Y complex is inevitable. This has been analyzed by ab-initio molecular orbital calculations using Z= Hydrogen, Halogens, Chalcogens, and Pnicogens as prototypical examples. Our analysis revealed that, the competition between negative hyperconjugation within the donor (X-Z) molecule and Charge Transfer (CT) from the acceptor (Y) molecule is the primary reason for the X-Z bond length change. Here, we report that, the proper tuning of X- and Y-group for a particular Z- can change the blue-shifting nature of X-Z bond to zero-shifting and further to red-shifting. This observation led to the proposal of a continuum in the variation of the X-Z bond length during the formation of X-Z---Y complex. The varying number of orbitals and electrons available around the Z-atom differentiates various classes of weak interactions and leads to interactions dramatically different from the H-Bond. Our explanations based on the model of anti-bonding orbitals can be transferred from one class of weak interactions to another. We further take the idea of continuum to the nature of chemical bonding in general. © 2015 Wiley Periodicals, Inc.

  8. Physics of the N=Z and N=Z+1 Nuclei in the A = 80--100 Region

    NASA Astrophysics Data System (ADS)

    Bucurescu, D.

    2007-04-01

    A review of the experimental work performed at the GASP array with the purpose of the identification and first spectroscopic measurements of the heaviest even-even N=Z and odd-A N=Z+1 nuclei (mass larger than 80) is made. Systematic experiments in this mass region led to the first study of seven such nuclei: 88Ru, 81Zr, 85Mo, 89Ru, 91Rh, 93Pd, and 95Ag, and extensive data on many other nuclei in their neighborhood. The systematic evolution of the level structures in both even-even and odd-A nuclei, between N approx Z approx 40 and N approx Z approx 47 is briefly presented. The possibility that effects of the neutron-proton pairing have been observed, as well as the type of collectivity observed in this region are discussed.

  9. Identifying a National Death Index Match

    PubMed Central

    Burchett, Bruce M.; Blazer, Dan G.

    2009-01-01

    Data from the National Death Index (NDI) are frequently used to determine survival status in epidemiologic or clinical studies. On the basis of selected information submitted by the investigator, NDI returns a file containing a set of candidate matches. Although NDI deems some matches as perfect, multiple candidate matches may be available for other cases. Working across data from the Duke University site of the Established Populations for Epidemiologic Studies of the Elderly (EPESE), NDI, and the Social Security Death Index (SSDI), the authors found that, for this Established Populations for Epidemiologic Studies of the Elderly cohort of 1,896 cases born before 1922 and alive as of January 1, 1999, a match on Social Security number plus additional personal information (specific combinations of last name, first name, month of birth, day of birth) resulted in agreement between NDI and Social Security Death Index dates of death 94.7% of the time, while comparable agreement was found for only 12.3% of candidate decedents who did not have the required combination of information. Thus, an easy to apply algorithm facilitates accurate identification of NDI matches. PMID:19567777

  10. FIRST RESULTS FROM Z -FOURGE : DISCOVERY OF A CANDIDATE CLUSTER AT z = 2.2 IN COSMOS

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Spitler, Lee R.; Glazebrook, Karl; Poole, Gregory B.

    2012-04-01

    We report the first results from the Z -FOURGE survey: the discovery of a candidate galaxy cluster at z = 2.2 consisting of two compact overdensities with red galaxies detected at {approx}> 20{sigma} above the mean surface density. The discovery was made possible by a new deep (K{sub s} {approx}< 24.8 AB 5{sigma}) Magellan/FOURSTAR near-IR imaging survey with five custom medium-bandwidth filters. The filters pinpoint the location of the Balmer/4000 A break in evolved stellar populations at 1.5 < z < 3.5, yielding significantly more accurate photometric redshifts than possible with broadband imaging alone. The overdensities are within 1' ofmore » each other in the COSMOS field and appear to be embedded in a larger structure that contains at least one additional overdensity ({approx}10{sigma}). Considering the global properties of the overdensities, the z = 2.2 system appears to be the most distant example of a galaxy cluster with a population of red galaxies. A comparison to a large {Lambda}CDM simulation suggests that the system may consist of merging subclusters, with properties in between those of z > 2 protoclusters with more diffuse distributions of blue galaxies and the lower-redshift galaxy clusters with prominent red sequences. The structure is completely absent in public optical catalogs in COSMOS and only weakly visible in a shallower near-IR survey. The discovery showcases the potential of deep near-IR surveys with medium-band filters to advance the understanding of environment and galaxy evolution at z > 1.5.« less

  11. Stereoselectivity of supported alkene metathesis catalysts: a goal and a tool to characterize active sites.

    PubMed

    Copéret, Christophe

    2011-01-05

    Stereoselectivity in alkene metathesis is a challenge and can be used as a tool to study active sites under working conditions. This review describes the stereochemical relevance and problems in alkene metathesis (kinetic vs. thermodynamic issues), the use of (E/Z) ratio at low conversions as a tool to characterize active sites of heterogeneous catalysts and finally to propose strategies to improve catalysts based on the current state of the art.

  12. Normative Bone Mineral Density Z-Scores for Canadians Aged 16 to 24 Years: The Canadian Multicenter Osteoporosis Study

    PubMed Central

    Zhou, Wei; Langsetmo, Lisa; Berger, Claudie; Adachi, Jonathan D.; Papaioannou, Alexandra; Ioannidis, George; Webber, Colin; Atkinson, Stephanie A.; Olszynski, Wojciech P.; Brown, Jacques P.; Hanley, David A.; Josse, Robert; Kreiger, Nancy; Prior, Jerilynn; Kaiser, Stephanie; Kirkland, Susan; Goltzman, David; Davison, Kenneth Shawn

    2016-01-01

    The objectives of the study were to develop bone mineral density (BMD) reference norms and BMD Z-scores at various skeletal sites, to determine whether prior fracture and/or asthma were related to BMD, and to assess possible geographic variation of BMD among Canadian youth aged 16–24 yr. Z-Scores were defined as the number of standard deviations from the mean BMD of a healthy population of the same age, race, and sex. Z-Scores were calculated using the reference sample defined as Canadian Caucasian participants without asthma or prior fracture. Reference standards were created for lumbar spine (L1–L4), femoral neck, total hip, and greater trochanter, by each year of age (16–24 yr), and by sex. The Z-score norms were developed for groups noted earlier. Mean Z-scores between the asthma or fracture subgroups compared with the mean Z-scores in the reference sample were not different. There were minor differences in mean BMD across different Canadian geographic regions. This study provides age, sex, and skeletal site-specific Caucasian reference norms and formulae for the calculation of BMD Z-scores for Canadian youth aged 16–24 yr. This information will be valuable to help to identify individuals with clinically meaningful low BMD. PMID:20554232

  13. Seasonal and Diel Vocalization Patterns of Antarctic Blue Whale (Balaenoptera musculus intermedia) in the Southern Indian Ocean: A Multi-Year and Multi-Site Study

    PubMed Central

    Leroy, Emmanuelle C.; Samaran, Flore; Bonnel, Julien; Royer, Jean-Yves

    2016-01-01

    Passive acoustic monitoring is an efficient way to provide insights on the ecology of large whales. This approach allows for long-term and species-specific monitoring over large areas. In this study, we examined six years (2010 to 2015) of continuous acoustic recordings at up to seven different locations in the Central and Southern Indian Basin to assess the peak periods of presence, seasonality and migration movements of Antarctic blue whales (Balaenoptera musculus intermedia). An automated method is used to detect the Antarctic blue whale stereotyped call, known as Z-call. Detection results are analyzed in terms of distribution, seasonal presence and diel pattern of emission at each site. Z-calls are detected year-round at each site, except for one located in the equatorial Indian Ocean, and display highly seasonal distribution. This seasonality is stable across years for every site, but varies between sites. Z-calls are mainly detected during autumn and spring at the subantarctic locations, suggesting that these sites are on the Antarctic blue whale migration routes, and mostly during winter at the subtropical sites. In addition to these seasonal trends, there is a significant diel pattern in Z-call emission, with more Z-calls in daytime than in nighttime. This diel pattern may be related to the blue whale feeding ecology. PMID:27828976

  14. Large nonlinear absorption and refraction coefficients of carbon nanotubes estimated from femtosecond z-scan measurements

    NASA Astrophysics Data System (ADS)

    Kamaraju, N.; Kumar, Sunil; Sood, A. K.; Guha, Shekhar; Krishnamurthy, Srinivasan; Rao, C. N. R.

    2007-12-01

    Nonlinear transmission of 80 and 140fs pulsed light with 0.79μm wavelength through single walled carbon nanotubes suspended in water containing sodium dodecyl sulfate is studied. Pulse-width independent saturation absorption and negative cubic nonlinearity are observed, respectively, in open and closed aperture z-scan experiments. The theoretical expressions derived to analyze the z-dependent transmission in the saturable limit require two photon absorption coefficient β0˜1.4cm/MW and a nonlinear index γ ˜-5.5×10-11cm2/W to fit the data.

  15. Antisense RNA: effect of ribosome binding sites, target location, size, and concentration on the translation of specific mRNA molecules.

    PubMed

    Daugherty, B L; Hotta, K; Kumar, C; Ahn, Y H; Zhu, J D; Pestka, S

    1989-01-01

    A series of plasmids were constructed to generate RNA complementary to the beta-galactosidase messenger RNA under control of the phage lambda PL promoter. These plasmids generate anti-lacZ mRNA bearing or lacking a synthetic ribosome binding site adjacent to the lambda PL promoter and/or the lacZ ribosome binding site in reverse orientation. Fragments of lacZ DNA from the 5' and/or the 3' region were used in these constructions. When these anti-mRNA molecules were produced in Escherichia coli 294, maximal inhibition of beta-galactosidase synthesis occurred when a functional ribosome binding site was present near the 5' end of the anti-mRNA and the anti-mRNA synthesized was complementary to the 5' region of the mRNA corresponding to the lacZ ribosome binding site and/or the 5'-coding sequence. Anti-mRNAs producing maximal inhibition of beta-galactosidase synthesis exhibited an anti-lacZ mRNA:normal lacZ mRNA ratio of 100:1 or higher. Those showing lower levels of inhibition exhibited much lower anti-lacZ mRNA:normal lacZ mRNA ratios. A functional ribosome binding site at the 5'-end was found to decrease the decay rate of the anti-lacZ mRNAs. In addition, the incorporation of a transcription terminator just downstream of the antisense segment provided for more efficient inhibition of lacZ mRNA translation due to synthesis of smaller and more abundant anti-lacZ mRNAs. The optimal constructions produced undetectable levels of beta-galactosidase synthesis.

  16. Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice.

    PubMed

    Huang, Jian; Zhang, Kewei; Shen, Yi; Huang, Zejun; Li, Ming; Tang, Ding; Gu, Minghong; Cheng, Zhukuan

    2009-03-01

    Recent completion of rice genome sequencing has revealed that more than 40% of its genome consists of repetitive sequences, and most of them are related to inactive transposable elements. In the present study, a transposable element, nDaiZ0, which is induced by tissue culture with high frequency, was identified by sequence analysis of an allelic line of the golden hull and internode 2 (gh2) mutant, which was integrated into the forth exon of GH2. The 528-bp nDaiZ0 has 14-bp terminal inverted repeats (TIRs), and generates an 8-bp duplication of its target sites (TSD) during its mobilization. nDaiZs are non-autonomous transposons and have no coding capacity. Bioinformatics analysis and southern blot hybridization showed that at least 16 copies of nDaiZ elements exist in the japonica cultivar Nipponbare genome and 11 copies in the indica cultivar 93-11 genome. During tissue culture, only one copy, nDaiZ9, located on chromosome 5 in the genome of Nipponbare can be activated with its transposable frequency reaching 30%. However, nDaiZ9 was not present in the 93-11 genome. The larger elements, DaiZs, were further identified by database searching using nDaiZ0 as a query because they share similar TIRs and subterminal sequences. DaiZ can also generate an 8-bp TSD. DaiZ elements contain a conserved region with a high similarity to the hAT dimerization motif, suggesting that the nDaiZ-DaiZ transposon system probably belongs to the hAT superfamily of class II transposons. Phylogenetic analysis indicated that it is a new type of plant hAT-like transposon. Although nDaiZ is activated by tissue culture, the high transposable frequency indicates that it could become a useful gene tagging system for rice functional genomic studies. In addition, the mechanism of the high transposable ability of nDaiZ9 is discussed.

  17. VALIDATION OF A RECENTLY DEVELOPED EPIBENTHIC INDEX DEVELOPED FOR NEW JERSEY ESTUARIES

    EPA Science Inventory

    An epifaunal index was recently developed for New Jersey estuaries (138 sites). Initial analysis indicated that this index related well to land use gradients from Raritan Bay (more developed) south to Great Bay (less developed). In this study we refined the evaluation by compar...

  18. Inter- and intra-annual variations of clumping index derived from the MODIS BRDF product

    NASA Astrophysics Data System (ADS)

    He, Liming; Liu, Jane; Chen, Jing M.; Croft, Holly; Wang, Rong; Sprintsin, Michael; Zheng, Ting; Ryu, Youngryel; Pisek, Jan; Gonsamo, Alemu; Deng, Feng; Zhang, Yongqin

    2016-02-01

    Clumping index quantifies the level of foliage aggregation, relative to a random distribution, and is a key structural parameter of plant canopies and is widely used in ecological and meteorological models. In this study, the inter- and intra-annual variations in clumping index values, derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) BRDF product, are investigated at six forest sites, including conifer forests, a mixed deciduous forest and an oak-savanna system. We find that the clumping index displays large seasonal variation, particularly for the deciduous sites, with the magnitude in clumping index values at each site comparable on an intra-annual basis, and the seasonality of clumping index well captured after noise removal. For broadleaved and mixed forest sites, minimum clumping index values are usually found during the season when leaf area index is at its maximum. The magnitude of MODIS clumping index is validated by ground data collected from 17 sites. Validation shows that the MODIS clumping index can explain 75% of variance in measured values (bias = 0.03 and rmse = 0.08), although with a narrower amplitude in variation. This study suggests that the MODIS BRDF product has the potential to produce good seasonal trajectories of clumping index values, but with an improved estimation of background reflectance.

  19. A TEST OF COSMOLOGICAL MODELS USING HIGH-z MEASUREMENTS OF H(z)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Melia, Fulvio; McClintock, Thomas M., E-mail: fmelia@email.arizona.edu, E-mail: tmcclintock89@gmail.com

    2015-10-15

    The recently constructed Hubble diagram using a combined sample of SNLS and SDSS-II SNe Ia, and an application of the Alcock–Paczyński (AP) test using model-independent Baryon Acoustic Oscillation (BAO) data, have suggested that the principal constraint underlying the cosmic expansion is the total equation-of-state of the cosmic fluid, rather than that of its dark energy. These studies have focused on the critical redshift range (0 ≲ z ≲ 2) within which the transition from decelerated to accelerated expansion is thought to have occurred, and they suggest that the cosmic fluid has zero active mass, consistent with a constant expansion rate.more » The evident impact of this conclusion on cosmological theory calls for an independent confirmation. In this paper, we carry out this crucial one-on-one comparison between the R{sub h} = ct universe (a Friedmann–Robertson–Walker cosmology with zero active mass) and wCDM/ΛCDM, using the latest high-z measurements of H(z). Whereas the SNe Ia yield the integrated luminosity distance, while the AP diagnostic tests the geometry of the universe, the Hubble parameter directly samples the expansion rate itself. We find that the model-independent cosmic chronometer data prefer R{sub h} = ct over wCDM/ΛCDM with a Bayes Information Criterion likelihood of ∼95% versus only ∼5%, in strong support of the earlier SNe Ia and AP results. This contrasts with a recent analysis of H(z) data based solely on BAO measurements which, however, strongly depend on the assumed cosmology. We discuss why the latter approach is inappropriate for model comparisons, and emphasize again the need for truly model-independent observations to be used in cosmological tests.« less

  20. Preconception maternal nutrition: a multi-site randomized controlled trial

    PubMed Central

    2014-01-01

    Background Research directed to optimizing maternal nutrition commencing prior to conception remains very limited, despite suggestive evidence of its importance in addition to ensuring an optimal nutrition environment in the periconceptional period and throughout the first trimester of pregnancy. Methods/Study design This is an individually randomized controlled trial of the impact on birth length (primary outcome) of the time at which a maternal nutrition intervention is commenced: Arm 1: ≥ 3 mo preconception vs. Arm 2: 12-14 wk gestation vs. Arm 3: none. 192 (derived from 480) randomized mothers and living offspring in each arm in each of four research sites (Guatemala, India, Pakistan, Democratic Republic of the Congo). The intervention is a daily 20 g lipid-based (118 kcal) multi-micronutient (MMN) supplement. Women randomized to receive this intervention with body mass index (BMI) <20 or whose gestational weight gain is low will receive an additional 300 kcal/d as a balanced energy-protein supplement. Researchers will visit homes biweekly to deliver intervention and monitor compliance, pregnancy status and morbidity; ensure prenatal and delivery care; and promote breast feeding. The primary outcome is birth length. Secondary outcomes include: fetal length at 12 and 34 wk; incidence of low birth weight (LBW); neonatal/infant anthropometry 0-6 mo of age; infectious disease morbidity; maternal, fetal, newborn, and infant epigenetics; maternal and infant nutritional status; maternal and infant microbiome; gut inflammatory biomarkers and bioactive and nutritive compounds in breast milk. The primary analysis will compare birth Length-for-Age Z-score (LAZ) among trial arms (independently for each site, estimated effect size: 0.35). Additional statistical analyses will examine the secondary outcomes and a pooled analysis of data from all sites. Discussion Positive results of this trial will support a paradigm shift in attention to nutrition of all females of

  1. Z-Boson Decays To A Vector Quarkonium Plus A Photon

    DOE PAGES

    Bodwin, Geoffrey T.; Chung, Hee Sok; Ee, June-Haak; ...

    2018-01-18

    We compute the decay rates for the processes Z → V + γ , where Z is the Z -boson, γ is the photon, and V is one of the vector quarkonia J / ψ or Υ ( n S ) , with n = 1 , 2, or 3. Our computations include corrections through relative orders α s and v 2 and resummations of logarithms of mmore » $$2\\atop{Z}$$/$$2\\atop{Q}$$, to all orders in α s , at next-to-leading-logarithmic accuracy. ( v is the velocity of the heavy quark Q or the heavy antiquark $$\\bar{Q}$$ in the quarkonium rest frame, and m Z and m Q are the masses of Z and Q , respectively.) Our calculations are the first to include both the order- α s correction to the light-cone distributions amplitude and the resummation of logarithms of m$$2\\atop{Z}$$/$$2\\atop{Q}$$ and are the first calculations for the Υ (2S) and Υ (3S) final states. The resummations of logarithms of m$$2\\atop{Z}$$/$$2\\atop{Q}$$ that are associated with the order- α s and order- v 2 corrections are carried out by making use of the Abel-Padé method. We confirm the analytic result for the order- v 2 correction that was presented in a previous publication, and we correct the relative sign of the direct and indirect amplitudes and some choices of scales in that publication. In conclusion, our branching fractions for Z → J / ψ + γ and Z → Υ (1 S) + γ differ by 2.0σ and -4.0 σ, respectively, from the branching fractions that are given in the most recent publication on this topic (in units of the uncertainties that are given in that publication). However, we argue that the uncertainties in the rates are underestimated in that publication.« less

  2. Z -boson decays to a vector quarkonium plus a photon

    NASA Astrophysics Data System (ADS)

    Bodwin, Geoffrey T.; Chung, Hee Sok; Ee, June-Haak; Lee, Jungil

    2018-01-01

    We compute the decay rates for the processes Z →V +γ , where Z is the Z -boson, γ is the photon, and V is one of the vector quarkonia J /ψ or ϒ (n S ), with n =1 , 2, or 3. Our computations include corrections through relative orders αs and v2 and resummations of logarithms of mZ2/mQ2, to all orders in αs, at next-to-leading-logarithmic accuracy. (v is the velocity of the heavy quark Q or the heavy antiquark Q ¯ in the quarkonium rest frame, and mZ and mQ are the masses of Z and Q , respectively.) Our calculations are the first to include both the order-αs correction to the light-cone distributions amplitude and the resummation of logarithms of mZ2/mQ2 and are the first calculations for the ϒ (2 S ) and ϒ (3 S ) final states. The resummations of logarithms of mZ2/mQ2 that are associated with the order-αs and order-v2 corrections are carried out by making use of the Abel-Padé method. We confirm the analytic result for the order-v2 correction that was presented in a previous publication, and we correct the relative sign of the direct and indirect amplitudes and some choices of scales in that publication. Our branching fractions for Z →J /ψ +γ and Z →ϒ (1 S )+γ differ by 2.0 σ and -4.0 σ , respectively, from the branching fractions that are given in the most recent publication on this topic (in units of the uncertainties that are given in that publication). However, we argue that the uncertainties in the rates are underestimated in that publication.

  3. Z-Boson Decays To A Vector Quarkonium Plus A Photon

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bodwin, Geoffrey T.; Chung, Hee Sok; Ee, June-Haak

    We compute the decay rates for the processes Z → V + γ , where Z is the Z -boson, γ is the photon, and V is one of the vector quarkonia J / ψ or Υ ( n S ) , with n = 1 , 2, or 3. Our computations include corrections through relative orders α s and v 2 and resummations of logarithms of mmore » $$2\\atop{Z}$$/$$2\\atop{Q}$$, to all orders in α s , at next-to-leading-logarithmic accuracy. ( v is the velocity of the heavy quark Q or the heavy antiquark $$\\bar{Q}$$ in the quarkonium rest frame, and m Z and m Q are the masses of Z and Q , respectively.) Our calculations are the first to include both the order- α s correction to the light-cone distributions amplitude and the resummation of logarithms of m$$2\\atop{Z}$$/$$2\\atop{Q}$$ and are the first calculations for the Υ (2S) and Υ (3S) final states. The resummations of logarithms of m$$2\\atop{Z}$$/$$2\\atop{Q}$$ that are associated with the order- α s and order- v 2 corrections are carried out by making use of the Abel-Padé method. We confirm the analytic result for the order- v 2 correction that was presented in a previous publication, and we correct the relative sign of the direct and indirect amplitudes and some choices of scales in that publication. In conclusion, our branching fractions for Z → J / ψ + γ and Z → Υ (1 S) + γ differ by 2.0σ and -4.0 σ, respectively, from the branching fractions that are given in the most recent publication on this topic (in units of the uncertainties that are given in that publication). However, we argue that the uncertainties in the rates are underestimated in that publication.« less

  4. Femtosecond Kerr index of cyclic olefin co/polymers for THz nonlinear optics

    NASA Astrophysics Data System (ADS)

    Noskovicova, E.; Lorenc, D.; Slusna, L.; Velic, D.

    2016-10-01

    The second-order nonlinear refractive index n2 (Kerr index) of cyclic olefin copolymer (TOPAS) and cyclic olefin polymers (ZEONEX, ZEONOR) was determined at the wavelength of 800 nm within this work. Bulk samples of ZEONEX, ZEONOR and TOPAS were measured using the single-beam Z-scan technique and the values of their nonlinear refractive index were determined to be approximately 2 × 10-20 m2W-1 for all cases. The obtained values of n2 play a vital role for ultrafast pulse evolution and corresponding phenomena such as nonlinear spectral transformation.

  5. Complex genomic rearrangement in CCS-LacZ transgenic mice.

    PubMed

    Stroud, Dina Myers; Darrow, Bruce J; Kim, Sang Do; Zhang, Jie; Jongbloed, Monique R M; Rentschler, Stacey; Moskowitz, Ivan P G; Seidman, Jonathan; Fishman, Glenn I

    2007-02-01

    The cardiac conduction system (CCS)-lacZ insertional mouse mutant strain genetically labels the developing and mature CCS. This pattern of expression is presumed to reflect the site of transgene integration rather than regulatory elements within the transgene proper. We sought to characterize the genomic structure of the integration locus and identify nearby gene(s) that might potentially confer the observed CCS-specific transcription. We found rearrangement of chromosome 7 between regions D1 and E1 with altered transcription of multiple genes in the D1 region. Several lines of evidence suggested that regulatory elements from at least one gene, Slco3A1, influenced CCS-restricted reporter gene expression. In embryonic hearts, Slco3A1 was expressed in a spatial pattern similar to the CCS-lacZ transgene and was similarly neuregulin-responsive. At later stages, however, expression patterns of the transgene and Slco3A1 diverged, suggesting that the Slco3A1 locus may be necessary, but not sufficient to confer CCS-specific transgene expression in the CCS-lacZ line. (c) 2007 Wiley-Liss, Inc.

  6. Associations of various family characteristics and time use with children's body mass index.

    PubMed

    Forshee, Richard A; Anderson, Patricia A; Storey, Maureen L

    2009-04-01

    This study used multiple regression models to estimate associations of various family characteristics and time use with the body mass index (BMI) z-scores of 734 boys and 725 girls aged 5-18y from the Panel Study of Income Dynamics Child Development Supplement 2003. The strongest relationship in the data was between the BMI of the head of household and a child's BMI z-score (p < 0.001). Time spent sleeping, performing sedentary behaviors, and participating in physical activities was not associated with a child's BMI z-score. This suggests that a family-oriented approach to prevent and treat childhood and adolescent overweight is required.

  7. NDK Interacts with FtsZ and Converts GDP to GTP to Trigger FtsZ Polymerisation--A Novel Role for NDK.

    PubMed

    Mishra, Saurabh; Jakkala, Kishor; Srinivasan, Ramanujam; Arumugam, Muthu; Ranjeri, Raghavendra; Gupta, Prabuddha; Rajeswari, Haryadi; Ajitkumar, Parthasarathi

    2015-01-01

    Nucleoside diphosphate kinase (NDK), conserved across bacteria to humans, synthesises NTP from NDP and ATP. The eukaryotic homologue, the NDPK, uses ATP to phosphorylate the tubulin-bound GDP to GTP for tubulin polymerisation. The bacterial cytokinetic protein FtsZ, which is the tubulin homologue, also uses GTP for polymerisation. Therefore, we examined whether NDK can interact with FtsZ to convert FtsZ-bound GDP and/or free GDP to GTP to trigger FtsZ polymerisation. Recombinant and native NDK and FtsZ proteins of Mycobacterium smegmatis and Mycobacterium tuberculosis were used as the experimental samples. FtsZ polymersation was monitored using 90° light scattering and FtsZ polymer pelleting assays. The γ32P-GTP synthesised by NDK from GDP and γ32P-ATP was detected using thin layer chromatography and quantitated using phosphorimager. The FtsZ bound 32P-GTP was quantitated using phosphorimager, after UV-crosslinking, followed by SDS-PAGE. The NDK-FtsZ interaction was determined using Ni2+-NTA-pulldown assay and co-immunoprecipitation of the recombinant and native proteins in vitro and ex vivo, respectively. NDK triggered instantaneous polymerisation of GDP-precharged recombinant FtsZ in the presence of ATP, similar to the polymerisation of recombinant FtsZ (not GDP-precharged) upon the direct addition of GTP. Similarly, NDK triggered polymerisation of recombinant FtsZ (not GDP-precharged) in the presence of free GDP and ATP as well. Mutant NDK, partially deficient in GTP synthesis from ATP and GDP, triggered low level of polymerisation of MsFtsZ, but not of MtFtsZ. As characteristic of NDK's NTP substrate non-specificity, it used CTP, TTP, and UTP also to convert GDP to GTP, to trigger FtsZ polymerisation. The NDK of one mycobacterial species could trigger the polymerisation of the FtsZ of another mycobacterial species. Both the recombinant and the native NDK and FtsZ showed interaction with each other in vitro and ex vivo, alluding to the possibility of direct

  8. NDK Interacts with FtsZ and Converts GDP to GTP to Trigger FtsZ Polymerisation - A Novel Role for NDK

    PubMed Central

    Mishra, Saurabh; Jakkala, Kishor; Srinivasan, Ramanujam; Arumugam, Muthu; Ranjeri, Raghavendra; Gupta, Prabuddha; Rajeswari, Haryadi; Ajitkumar, Parthasarathi

    2015-01-01

    Introduction Nucleoside diphosphate kinase (NDK), conserved across bacteria to humans, synthesises NTP from NDP and ATP. The eukaryotic homologue, the NDPK, uses ATP to phosphorylate the tubulin-bound GDP to GTP for tubulin polymerisation. The bacterial cytokinetic protein FtsZ, which is the tubulin homologue, also uses GTP for polymerisation. Therefore, we examined whether NDK can interact with FtsZ to convert FtsZ-bound GDP and/or free GDP to GTP to trigger FtsZ polymerisation. Methods Recombinant and native NDK and FtsZ proteins of Mycobacterium smegmatis and Mycobacterium tuberculosis were used as the experimental samples. FtsZ polymersation was monitored using 90° light scattering and FtsZ polymer pelleting assays. The γ32P-GTP synthesised by NDK from GDP and γ32P-ATP was detected using thin layer chromatography and quantitated using phosphorimager. The FtsZ bound 32P-GTP was quantitated using phosphorimager, after UV-crosslinking, followed by SDS-PAGE. The NDK-FtsZ interaction was determined using Ni2+-NTA-pulldown assay and co-immunoprecipitation of the recombinant and native proteins in vitro and ex vivo, respectively. Results NDK triggered instantaneous polymerisation of GDP-precharged recombinant FtsZ in the presence of ATP, similar to the polymerisation of recombinant FtsZ (not GDP-precharged) upon the direct addition of GTP. Similarly, NDK triggered polymerisation of recombinant FtsZ (not GDP-precharged) in the presence of free GDP and ATP as well. Mutant NDK, partially deficient in GTP synthesis from ATP and GDP, triggered low level of polymerisation of MsFtsZ, but not of MtFtsZ. As characteristic of NDK’s NTP substrate non-specificity, it used CTP, TTP, and UTP also to convert GDP to GTP, to trigger FtsZ polymerisation. The NDK of one mycobacterial species could trigger the polymerisation of the FtsZ of another mycobacterial species. Both the recombinant and the native NDK and FtsZ showed interaction with each other in vitro and ex vivo, alluding

  9. Body Mass Index and Timing of Pubertal Initiation in Boys

    PubMed Central

    Lee, Joyce M.; Kaciroti, Niko; Appugliese, Danielle; Corwyn, Robert F.; Bradley, Robert H.; Lumeng, Julie C.

    2014-01-01

    Objective To examine the association between body mass index (BMI [calculated as weight in kilograms divided by height in meters squared]) and timing of pubertal onset in a population-based sample of US boys. Design Longitudinal prospective study. Setting Ten US sites that participated in the National Institute of Child Health and Human Development Study of Early Child Care and Youth Development. Participants Of 705 boys initially enrolled in the study, information about height and weight measures and pubertal stage by age 11.5 years was available for 401 boys. Main Exposure The BMI trajectory created from measured heights and weights at ages 2, 3, 4.5, 7, 9, 9.5, 10.5, and 11.5 years. Main Outcome Measure Onset of puberty at age 11.5 years as measured by Tanner genitalia staging. Results Boys in the highest BMI trajectory (mean BMI z score at age 11.5 years, 1.84) had a greater relative risk of being prepubertal compared with boys in the lowest BMI trajectory (mean BMI z score at age 11.5 years, −0.76) (adjusted relative risk=2.63; 95% confidence interval, 1.05–6.61; P=.04). Conclusions The relationship between body fat and timing of pubertal onset is not the same in boys as it is in girls. Further studies are needed to better understand the physiological link between body fat and timing of pubertal onset in both sexes. PMID:20124142

  10. Exercise restriction is not associated with increasing body mass index over time in patients with anomalous aortic origin of the coronary arteries.

    PubMed

    Meza, James M; Elias, Matthew D; Wilder, Travis J; O'Brien, James E; Kim, Richard W; Mavroudis, Constantine; Williams, William G; Brothers, Julie; Cohen, Meryl S; McCrindle, Brian W

    2017-10-01

    Anomalous aortic origin of the coronary arteries is associated with exercise-induced ischaemia, leading some physicians to restrict exercise in patients with this condition. We sought to determine whether exercise restriction was associated with increasing body mass index over time. From 1998 to 2015, 440 patients ⩽30 years old were enrolled into an inception cohort. Exercise-restriction status was documented in 143 patients. Using linear mixed model repeated-measures regression, factors associated with increasing body mass index z-score over time, including exercise restriction and surgical intervention as time-varying covariates, were investigated. The 143 patients attended 558 clinic visits for which exercise-restriction status was recorded. The mean number of clinic visits per patient was 4, and the median duration of follow-up was 1.7 years (interquartile range (IQR) 0.5-4.4). The median age at first clinic visit was 10.3 years (IQR 7.1-13.9), and 71% (101/143) were males. All patients were alive at their most recent follow-up. At the first clinic visit, 54% (78/143) were exercise restricted, and restriction status changed in 34% (48/143) during follow-up. The median baseline body mass index z-score was 0.2 (IQR 0.3-0.9). In repeated-measures analysis, neither time-related exercise restriction nor its interaction with time was associated with increasing body mass index z-score. Surgical intervention and its interaction with time were associated with decreasing body mass index z-score. Although exercise restriction was not associated with increasing body mass index over time, surgical intervention was associated with decreasing body mass index z-score over time in patients with anomalous aortic origin of the coronary arteries.

  11. Optical and Near-Infrared Structural Properties of Cluster Galaxies at z ~ 0.3

    NASA Astrophysics Data System (ADS)

    La Barbera, F.; Busarello, G.; Merluzzi, P.; Massarotti, M.; Capaccioli, M.

    2002-06-01

    Structural parameters (half-light radius re, mean effective surface brightness <μ>e, and Sersic index n, parameterizing the light profile shape) are derived for a sample of galaxies in the rich cluster AC 118 at z=0.31, so far the largest (N=93) sample of galaxies at intermediate redshift with structural parameters measured in the near-infrared. The parameters are obtained in two optical wavebands (V and R) and in the K band, corresponding approximately to the B, V, and H rest frame. The distributions of re at z=0.31 match those for the Coma Cluster (i.e., for the local universe) both in the optical and in the NIR. The K-band distribution is of particular interest, since the NIR light mimics the mass distribution of galaxies. The similarity of the distributions for the two clusters (AC 118 and Coma) proves that the galaxies at the bright end of the luminosity function did not significantly change their sizes since z~0.3 to the present epoch. The ratio of the optical to the NIR half-light radius shows a marked trend with the shape of the light profile (Sersic index n). In galaxies with n>~4 (typical bright ellipticals) re,NIR~0.6re,opt, while the average ratio is 0.8 for galaxies with lower n (typical disk systems). Moreover, the NIR Sersic index is systematically larger than in the optical for n<~4. These results, translated into optical and optical-NIR color gradients, imply that the optical color gradients at z~0.3 are similar to those of nearby galaxies. The optical-NIR color gradients are in the average larger, ranging from -0.73 mag dex-1 for n<~4 to -0.35 mag dex-1 for n>~4. Models with ``pure age'' or ``pure metallicity'' gradients are unable to reconcile our color gradients estimates with observations at z~0, but we argue that the combined effects of age and metallicity might explain consistently the observed data: passive evolution (plus the possible effect of dust absorption) may account for the differences between the optical and NIR structural

  12. Supersymmetric Casimir energy and SL(3,Z) transformations

    NASA Astrophysics Data System (ADS)

    Brünner, Frederic; Regalado, Diego; Spiridonov, Vyacheslav P.

    2017-07-01

    We provide a recipe to extract the supersymmetric Casimir energy of theories defined on primary Hopf surfaces directly from the superconformal index. It involves an SL(3,Z) transformation acting on the complex structure moduli of the background geometry. In particular, the known relation between Casimir energy, index and partition function emerges naturally from this framework, allowing rewriting of the latter as a modified elliptic hypergeometric integral. We show this explicitly for N=1 SQCD and N=4 supersymmetric Yang-Mills theory for all classical gauge groups, and conjecture that it holds more generally. We also use our method to derive an expression for the Casimir energy of the nonlagrangian N=2 SCFT with E6 flavour symmetry. Furthermore, we predict an expression for Casimir energy of the N=1 SP(2N) theory with SU(8) × U(1) flavour symmetry that is part of a multiple duality network, and for the doubled N=1 theory with enhanced E7 flavour symmetry.

  13. THE SUBARU HIGH-z QUASAR SURVEY: DISCOVERY OF FAINT z ∼ 6 QUASARS

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kashikawa, Nobunari; Furusawa, Hisanori; Niino, Yuu

    2015-01-01

    We present the discovery of one or two extremely faint z ∼ 6 quasars in 6.5 deg{sup 2} utilizing a unique capability of the wide-field imaging of the Subaru/Suprime-Cam. The quasar selection was made in (i'-z{sub B} ) and (z{sub B} -z{sub R} ) colors, where z{sub B} and z{sub R} are bandpasses with central wavelengths of 8842 Å and 9841 Å, respectively. The color selection can effectively isolate quasars at z ∼ 6 from M/L/T dwarfs without the J-band photometry down to z{sub R} < 24.0, which is 3.5 mag deeper than the Sloan Digital Sky Survey (SDSS). Wemore » have selected 17 promising quasar candidates. The follow-up spectroscopy for seven targets identified one apparent quasar at z = 6.156 with M {sub 1450} = –23.10. We also identified one possible quasar at z = 6.041 with a faint continuum of M {sub 1450} = –22.58 and a narrow Lyα emission with HWHM =427 km s{sup –1}, which cannot be distinguished from Lyman α emitters. We derive the quasar luminosity function at z ∼ 6 by combining our faint quasar sample with the bright quasar samples by SDSS and CFHQS. Including our data points invokes a higher number density in the faintest bin of the quasar luminosity function than the previous estimate employed. This suggests a steeper faint-end slope than lower z, though it is yet uncertain based on a small number of spectroscopically identified faint quasars, and several quasar candidates still remain to be diagnosed. The steepening of the quasar luminosity function at the faint end does increase the expected emission rate of the ionizing photon; however, it only changes by a factor of approximately two to six. This was found to still be insufficient for the required photon budget of reionization at z ∼ 6.« less

  14. Higher Weight, Lower Education: A Longitudinal Association between Adolescents' Body Mass Index and Their Subsequent Educational Achievement Level?

    ERIC Educational Resources Information Center

    Larsen, Junilla K.; Kleinjan, Marloes; Engels, Rutger C. M. E.; Fisher, Jennifer O.; Hermans, Roel

    2014-01-01

    Background: The purpose of this study was to examine the association between adolescents' body mass index (BMI) z-scores and their subsequent level of schooling, extending previous longitudinal research by using objectively measured weight and height data. Methods: A longitudinal study with 3 study waves (1-year intervals) involving 1248 Dutch…

  15. Prospects of A and Z identification experiments at LBNL

    NASA Astrophysics Data System (ADS)

    Gates, Jacklyn M.

    2016-12-01

    The identification of six new elements within the last 15 years and with proton numbers, Z = 113-118 has transformed the heavy element field. However, one key piece of information on these nuclei remains unmeasured: their proton and mass numbers, A. At Lawrence Berkeley National Laboratory, the heavy element group has undertaken a program to study these new elements to perform experiments aimed at measuring the Z and A.Here, an overview of recent experiments aimed towards identifying the Z of SHE, and the prospects for Z and A identification experiments at LBNL are presented.

  16. Soil-site relationships of the upland oaks

    Treesearch

    Willard H. Carmean

    1971-01-01

    Site quality for upland oaks can be estimated directly by using site-index curves, or indirect estimations can be made by using soil-site prediction methods. Presently available harmonized site-index curves may not be suitable for all upland oak species, or may not be suitable throughout their range. New stem-analysis data show that different species of oak have...

  17. Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.

    PubMed

    Drozdzal, Pawel; Gilski, Miroslaw; Kierzek, Ryszard; Lomozik, Lechoslaw; Jaskolski, Mariusz

    2013-06-01

    X-ray crystal structures of the spermine(4+) form of the Z-DNA duplex with the self-complementary d(CG)3 sequence in complexes with Mn(2+) and Zn(2+) cations have been determined at the ultrahigh resolutions of 0.75 and 0.85 Å, respectively. Stereochemical restraints were only used for the sperminium cation (in both structures) and for nucleotides with dual conformation in the Zn(2+) complex. The Mn(2+) and Zn(2+) cations at the major site, designated M(2+)(1), bind at the N7 position of G6 by direct coordination. The coordination geometry of this site was octahedral, with complete hydration shells. An additional Zn(2+)(2) cation was bis-coordinated in a tetrahedral fashion by the N7 atoms of G10 and G12 from a symmetry-related molecule. The coordination distances of Zn(2+)(1) and Zn(2+)(2) to the O6 atom of the guanine residues were 3.613 (6) and 3.258 (5) Å, respectively. Moreover, a chloride ion was also identified in the coordination sphere of Zn(2+)(2). Alternate conformations were observed in the Z-DNA-Zn(2+) structure not only at internucleotide linkages but also at the terminal C3'-OH group of G12. The conformation of the sperminium chain in the Z-DNA-Mn(2+) complex is similar to the spermine(4+) conformation in analogous Z-DNA-Mg(2+) structures. In the Z-DNA-Zn(2+) complex the sperminium cation is disordered and partially invisible in electron-density maps. In the Z-DNA-Zn(2+) complex the sperminium cation only interacts with the phosphate groups of the Z-DNA molecules, while in the Z-DNA-Mn(2+) structure it forms hydrogen bonds to both the phosphate groups and DNA bases.

  18. The structure of (3R)-hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Pseudomonas aeruginosa.

    PubMed

    Kimber, Matthew S; Martin, Fernando; Lu, Yingjie; Houston, Simon; Vedadi, Masoud; Dharamsi, Akil; Fiebig, Klaus M; Schmid, Molly; Rock, Charles O

    2004-12-10

    Type II fatty acid biosynthesis systems are essential for membrane formation in bacteria, making the constituent proteins of this pathway attractive targets for antibacterial drug discovery. The third step in the elongation cycle of the type II fatty acid biosynthesis is catalyzed by beta-hydroxyacyl-(acyl carrier protein) (ACP) dehydratase. There are two isoforms. FabZ, which catalyzes the dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP, is a universally expressed component of the bacterial type II system. FabA, the second isoform, as has more limited distribution in nature and, in addition to dehydration, also carries out the isomerization of trans-2- to cis-3-decenoyl-ACP as an essential step in unsaturated fatty acid biosynthesis. We report the structure of FabZ from the important human pathogen Pseudomonas aeruginosa at 2.5 A of resolution. PaFabZ is a hexamer (trimer of dimers) with the His/Glu catalytic dyad located within a deep, narrow tunnel formed at the dimer interface. Site-directed mutagenesis experiments showed that the obvious differences in the active site residues that distinguish the FabA and FabZ subfamilies of dehydratases do not account for the unique ability of FabA to catalyze isomerization. Because the catalytic machinery of the two enzymes is practically indistinguishable, the structural differences observed in the shape of the substrate binding channels of FabA and FabZ lead us to hypothesize that the different shapes of the tunnels control the conformation and positioning of the bound substrate, allowing FabA, but not FabZ, to catalyze the isomerization reaction.

  19. What Turns Galaxies Off? the Different Morphologies of Star-Forming and Quiescent Galaxies Since z Approximates 2 from CANDELS

    NASA Technical Reports Server (NTRS)

    Bell, Eric F.; VanDerWel, Arjen; Papovich, Casey; Kocevski, Dale; Lotz, Jennifer; McIntosh, Daniel H.; Kartaltepe, Jeyhan; Faber, S. M.; Ferguson, Harry; Koekemoer, Anton; hide

    2011-01-01

    We use HST/WFC3 imaging from the CANDELS multicyc1e treasury survey, in conjunction with the Sloan Digital Sky Survey, to explore the evolution of galactic structure for galaxies with stellar masses > 3 x 10(exp 10) Solar Mass from Z= 2.2 to the present epoch, a time span of 10 Gyr. We explore the relationship between rest-frame optical color, stellar mass, star formation activity and the structural parameters of galaxies as determined from parametric fits to the surface brightness profiles of galaxies. We confirm the dramatic evolution from z= 2.2 to the present day in the number density of non-star-forming galaxies above 3 x 10(exp 10) Solar Mass reported by other authors. We find that the vast majority of these quiescent systems have concentrated light profiles, as parameterized by the Sersic index, and the population of concentrated galaxies grows similarly rapidly. We examine the joint distribution of star formation activity, Sersic index, stellar mass, mass divided by radius (a proxy for velocity dispersion), and stellar surface density. Quiescence correlates poorly with stellar mass at all z < 2.2 (given the approx < 0.2 dex scatter between halo mass and stellar mass at z approximates 0 inferred by More et al, this argues against halo mass being the only factor determining quiescence). Quiescence correlates better with Sersic index, 'velocity dispersion' and stellar surface density, where Sersic index correlates the best (increasingly so at lower redshift). Yet, there is significant scatter between quiescence and galaxy structure: while the vast majority of quiescent galaxies have prominent bulges, many of them have significant disks, and a number of bulge-dominated galaxies have significant star formation. Noting the rarity of quiescent galaxies without prominent bulges, we argue that a prominent bulge (and, perhaps by association, a supermassive black hole) is a necessary but not sufficient condition for quenching star formation on galactic scales over the

  20. Selecting a Z39.50 Client or Web Gateway.

    ERIC Educational Resources Information Center

    Turner, Fay

    1998-01-01

    Provides a brief description of the Z39.50 information retrieval standard and reviews evaluation criteria and questions that should be asked when selecting a Z39.50 client. Areas for consideration include whether to buy or build a Z39.50 client, the end-user's requirements, connecting to a remote server, searching, managing the search response,…

  1. A to Z Index of Topics

    Science.gov Websites

    ; Environment Human Health Animal Health Safe Use Practices Food Safety Environment Air Water Soil Wildlife Ingredients Low-Risk Pesticides Organic Pesticide Ingredients Pesticide Incidents Human Exposure Pet Exposure Health and Pesticides Animal Health Care Provider Information Animal Incident Reporting Annual Reports

  2. Indonesian teacher engagement index: a rasch model analysis

    NASA Astrophysics Data System (ADS)

    Sasmoko; Abbas, B. S.; Indrianti, Y.; Widhoyoko, S. A.

    2018-01-01

    The research aimed to calibrate Indonesian Teacher Engagement Index (ITEI) using instrument with RASCH MODEL. The respondents were 672 teachers of elementary, junior high, high school and vocational school. The number of items planned was 165 items with the initial reliability of 0.98. The ITEI scale uses Likert Scale (1 to 4) which was converted from ordinal scale to Equal Interval Scale. RASCH MODEL analysis was done by selecting based on Outfit Mean Square (MNSQ) between 0.5-1.5 as a good item, and measuring Point Measure Correlation (Pt Mean Corr) with the criterion of 0.4-0.85. Moderate Outfit Z-Standard (ZSTD) was ignored because the sample was >500. Conclusions: ITEI is valid with 30 items and reliability of 0.97, and less engage teachers significantly at α <0.05.

  3. Search for t Z' associated production induced by t c Z' couplings at the LHC

    NASA Astrophysics Data System (ADS)

    Hou, Wei-Shu; Kohda, Masaya; Modak, Tanmoy

    2017-07-01

    The P5' and RK anomalies, recently observed by the LHCb Collaboration in B →K(*) transitions, may indicate the existence of a new Z' boson, which may arise from gauged Lμ-Lτ symmetry. Flavor-changing neutral current Z' couplings, such as t c Z', can be induced by the presence of extra vector-like quarks. In this paper we study the LHC signatures of the induced right-handed t c Z' coupling that is inspired by, but not directly linked to, the B →K(*) anomalies. The specific processes studied are c g →t Z' and its conjugate process, each followed by Z'→μ+μ-. By constructing an effective theory for the t c Z' coupling, we first explore in a model-independent way the discovery potential of such a Z' at the 14 TeV LHC with 300 and 3000 fb-1 integrated luminosities. We then reinterpret the model-independent results within the gauged Lμ-Lτ model. In connection with t c Z', the model also implies the existence of a flavor-conserving c c Z' coupling, which can drive the c c ¯→Z'→μ+μ- process. Our study shows that existing LHC results for dimuon resonance searches already constrain the c c Z' coupling, and that the Z' can be discovered in either or both of the c g →t Z' and c c ¯→Z' processes. We further discuss the sensitivity to the left-handed t c Z' coupling and find that the coupling values favored by the B →K(*) anomalies lie slightly below the LHC discovery reach even with 3000 fb-1 .

  4. The global repressor FliZ antagonizes gene expression by σS-containing RNA polymerase due to overlapping DNA binding specificity.

    PubMed

    Pesavento, Christina; Hengge, Regine

    2012-06-01

    FliZ, a global regulatory protein under the control of the flagellar master regulator FlhDC, was shown to antagonize σ(S)-dependent gene expression in Escherichia coli. Thereby it plays a pivotal role in the decision between alternative life-styles, i.e. FlhDC-controlled flagellum-based motility or σ(S)-dependent curli fimbriae-mediated adhesion and biofilm formation. Here, we show that FliZ is an abundant DNA-binding protein that inhibits gene expression mediated by σ(S) by recognizing operator sequences that resemble the -10 region of σ(S)-dependent promoters. FliZ does so with a structural element that is similar to region 3.0 of σ(S). Within this element, R108 in FliZ corresponds to K173 in σ(S), which contacts a conserved cytosine at the -13 promoter position that is specific for σ(S)-dependent promoters. R108 as well as C(-13) are also crucial for DNA binding by FliZ. However, while a number of FliZ binding sites correspond to known σ(S)-dependent promoters, promoter activity is not a prerequisite for FliZ binding and repressor function. Thus, we demonstrate that FliZ also feedback-controls flagellar gene expression by binding to a site in the flhDC control region that shows similarity only to a -10 element of a σ(S)-dependent promoter, but does not function as a promoter.

  5. A Novel C2H2 Transcription Factor that Regulates gliA Expression Interdependently with GliZ in Aspergillus fumigatus

    PubMed Central

    Schoberle, Taylor J.; Nguyen-Coleman, C. Kim; Herold, Jennifer; Yang, Ally; Weirauch, Matt; Hughes, Timothy R.; McMurray, John S.; May, Gregory S.

    2014-01-01

    Secondary metabolites are produced by numerous organisms and can either be beneficial, benign, or harmful to humans. Genes involved in the synthesis and transport of these secondary metabolites are frequently found in gene clusters, which are often coordinately regulated, being almost exclusively dependent on transcription factors that are located within the clusters themselves. Gliotoxin, which is produced by a variety of Aspergillus species, Trichoderma species, and Penicillium species, exhibits immunosuppressive properties and has therefore been the subject of research for many laboratories. There have been a few proteins shown to regulate the gliotoxin cluster, most notably GliZ, a Zn2Cys6 binuclear finger transcription factor that lies within the cluster, and LaeA, a putative methyltransferase that globally regulates secondary metabolism clusters within numerous fungal species. Using a high-copy inducer screen in A. fumigatus, our lab has identified a novel C2H2 transcription factor, which plays an important role in regulating the gliotoxin biosynthetic cluster. This transcription factor, named GipA, induces gliotoxin production when present in extra copies. Furthermore, loss of gipA reduces gliotoxin production significantly. Through protein binding microarray and mutagenesis, we have identified a DNA binding site recognized by GipA that is in extremely close proximity to a potential GliZ DNA binding site in the 5′ untranslated region of gliA, which encodes an efflux pump within the gliotoxin cluster. Not surprisingly, GliZ and GipA appear to work in an interdependent fashion to positively control gliA expression. PMID:24784729

  6. Ocean Drilling Program: Science Operator Site Index

    Science.gov Websites

    time estimator Long-Term Observatories and Legacy Holes (University of Miami site) Drilling Services systems Internet systems Help Desk Database services How to obtain ODP data Data types and examples Core

  7. Higher weight, lower education: a longitudinal association between adolescents' body mass index and their subsequent educational achievement level?

    PubMed

    Larsen, Junilla K; Kleinjan, Marloes; Engels, Rutger C M E; Fisher, Jennifer O; Hermans, Roel C J

    2014-12-01

    The purpose of this study was to examine the association between adolescents' body mass index (BMI) z-scores and their subsequent level of schooling, extending previous longitudinal research by using objectively measured weight and height data. A longitudinal study with 3 study waves (1-year intervals) involving 1248 Dutch adolescents (49% girls; mean age = 13.7 years) at schools providing different educational levels was used to determine adolescents who moved and did not move to a lower educational level in the first year, or in the second year, and to examine whether this movement could be predicted by BMI z-scores (zBMI), after controlling for a large range of potential confounding factors. A total of 1164 Dutch adolescents continued in the same level of education, whereas 84 adolescents moved to a lower educational level (43 moved in the first and 41 in the second year). A higher zBMI significantly increased the risk of a general transition to a lower educational level, and of a transition in the first year, but not in the second year, after controlling for potential demographic, behavioral, and psychological confounds. Findings suggest that a higher zBMI during adolescence immediately lowers educational achievement level during general secondary education. © 2014, American School Health Association.

  8. Effect of Mn and Ti substitution on the reflection loss characteristic of Ba{sub 0.6}Sr{sub 0.4}Fe{sub 11-z}MnTi{sub z}O{sub 19} (z = 0, 1, 2 and 3)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gunanto, Y. E., E-mail: yohanes.gunanto@uph.edu; Cahyadi, L., E-mail: lina.cahyadi@uph.edu; Adi, W. Ari, E-mail: dwisnuaa@batan.go.id

    2016-04-19

    The synthesis and characterization of composition Ba{sub 0.6}Sr{sub 0.4}Fe{sub 11-z}MnTi{sub z}O{sub 19} (z = 0; 1; 2 and 3) compound by solid state reaction using mechanical milling have been performed. The raw materials were BaCO{sub 3}, SrCO{sub 3}, Fe{sub 2}O{sub 3}, MnCO{sub 3}, and TiO{sub 2}. The mixed powder was compacted and sintered at 1000°C for 5 hours. X-ray diffraction studies indicate expansion of hexagonal unit cell and compression of atomic density with substitution of Mn{sup 2+} and Ti{sup 4+} ions. Effect of substitution upon magnetic properties revealed that total magnetization, remanence, and coercivity changed with substitution due to preferentialmore » site occupancy of substituted Mn{sup 2+} and Ti{sup 4+} ions. Since the coercivity and total magnetization may be controlled by substitution while maintaining resistive properties, this material is useful for microwave absorber.« less

  9. Specific interactions between mycobacterial FtsZ protein and curcumin derivatives: Molecular docking and ab initio molecular simulations

    NASA Astrophysics Data System (ADS)

    Fujimori, Mitsuki; Sogawa, Haruki; Ota, Shintaro; Karpov, Pavel; Shulga, Sergey; Blume, Yaroslav; Kurita, Noriyuki

    2018-01-01

    Filamentous temperature-sensitive Z (FtsZ) protein plays essential role in bacteria cell division, and its inhibition prevents Mycobacteria reproduction. Here we adopted curcumin derivatives as candidates of novel inhibitors and investigated their specific interactions with FtsZ, using ab initio molecular simulations based on protein-ligand docking, classical molecular mechanics and ab initio fragment molecular orbital (FMO) calculations. Based on FMO calculations, we specified the most preferable site of curcumin binding to FtsZ and highlighted the key amino acid residues for curcumin binding at an electronic level. The result will be useful for proposing novel inhibitors against FtsZ based on curcumin derivatives.

  10. Project ArchimedeZ

    DTIC Science & Technology

    2015-05-18

    of information is estimated to average 1 hour per response, including the time for reviewing instructions, searching existing data sources, gathering...describe the proposed content of Project ArchimedeZ, 4 ) describe incentives that Project ArchimedeZ will give to Total Force Airmen to participate and...engaged, most of the time, in some sort of PME but at a manageable level. Rather than a three- hour block, for example, Project ArchimedeZ would deliver

  11. An examination of photoacclimatory responses of Zostera marina transplants along a depth gradient for transplant-site selection in a disturbed estuary

    NASA Astrophysics Data System (ADS)

    Li, Wen-Tao; Kim, Seung Hyeon; Kim, Jae Woo; Kim, Jong-Hyeob; Lee, Kun-Seop

    2013-02-01

    Growth and photosynthetic responses of Zostera marina transplants along a depth gradient were examined to determine appropriate transplanting areas for seagrass restoration. Seagrass Z. marina was once widely distributed in the Taehwa River estuary in southeastern Korea, but has disappeared since the 1960s due to port construction and large scale pollutant inputs from upstream industrial areas. Recently, water quality has been considerably improved as a result of effective sewage treatment, and the local government is attempting to restore Z. marina to the estuary. For seagrass restoration in this estuary, a pilot transplantation trial of Z. marina at three water depths (shallow: 0.5 m; intermediate: 1.5 m; deep: 2.5 m relative to MLLW) was conducted in November 2008. The transplant shoot density increased gradually at the intermediate and deep sites, whereas the transplants at the shallow site disappeared after 3 months. To find the optimal transplantation locations in this estuary, the growth and photosynthetic responses of the transplants along a depth gradient were examined for approximately 4 months following transplantation in March 2009. In the 2009 experimental transplantation trial, shoot density of transplants at the shallow site was significantly higher than those at the intermediate and deep sites during the first 3 months following transplantation, but rapidly decreased approximately 4 months after transplantation. The chlorophyll content, photosynthetic efficiency (α), and maximum quantum yield (Fv/Fm) of the transplants were significantly higher at the deep site than at the shallow site. Shoot size, biomass and leaf productivity were also significantly higher at the deep site than at the shallow site. Although underwater irradiance was significantly lower at the deep site than at the shallow site, transplants at the deep site were morphologically and physiologically acclimated to the low light. Transplants at the shallow site exhibited high

  12. Improved Body Mass Index Measures Following a Middle School-Based Obesity Intervention-The MATCH Program.

    PubMed

    Lazorick, Suzanne; Fang, Xiangming; Hardison, George T; Crawford, Yancey

    2015-10-01

    Motivating Adolescents with Technology to CHOOSE Health™ (MATCH) is an educational and behavioral intervention in seventh grade. Teachers in 2 schools delivered the MATCH curriculum, with 1 control school. Using a quasi-experimental design, outcome measures included lessons completed, body mass index (BMI), BMI z-score (zBMI), BMI percentile, weight category, and self-reported lifestyle behaviors. We used multiple regression models to compare group results. For the MATCH group (N = 189), teachers provided lessons over 14 weeks; the control group (N = 173) received usual curriculum. Postintervention, the MATCH group had significant decreases in BMI measures compared with the control. In combined overweight and obese participants, the mean (95% confidence interval) zBMI change was -0.05 (-0.07, -0.03) in MATCH and -0.01 (-0.04, 0.02) in control, p = .034 between groups. After 1 year, improvements are sustained: for the overweight subgroup, the mean zBMI decreased from 1.34 to 1.26 post-MATCH, then to 1.26 after 1 year; for the obese subgroup, mean zBMI = 2.16, to 2.13 post-MATCH to 2.08 after 1 year. Self-reported lifestyle behaviors showed no differences. MATCH integrates theory-based strategies into standard curriculum delivered by teachers. No prior middle-school intervention has shown sustained change in BMI measures. MATCH warrants further study as a strategy to address obesity. © 2015, American School Health Association.

  13. Piloting a generic cancer consumer quality index in six European countries.

    PubMed

    Wind, Anke; Roeling, Mark Patrick; Heerink, Jana; Sixma, Herman; Presti, Pietro; Lombardo, Claudio; van Harten, Wim

    2016-09-02

    Accounting for patients' perspective has become increasingly important. Based on the Consumer Quality Index method (founded on Consumer Assessment of Healthcare Providers and Systems) a questionnaire was recently developed for Dutch cancer patients. As a next step, this study aimed to adapt and pilot this questionnaire for international comparison of cancer patients experience and satisfaction with care in six European countries. The Consumer Quality Index was translated into the local language at the participating pilot sites using cross-translation. A minimum of 100 patients per site were surveyed through convenience sampling. Data from seven pilot sites in six countries was collected through an online and paper-based survey. Internal consistency was tested by calculating Cronbach's alpha and validity by means of cognitive interviews. Demographic factors were compared as possible influencing factors. A total of 698 patients from six European countries filled the questionnaire. Cronbach's alpha was good or satisfactory in 8 out of 10 categories. Patient satisfaction significantly differed between the countries. We observed no difference in patient satisfaction for age, gender, education, and tumor type, but satisfaction was significantly higher in patients with a higher level of activation. This European Cancer Consumer Quality Index(ECCQI) showed promising scores on internal consistency (reliability) and a good internal validity. The ECCQI is to our knowledge the first to measure and compare experiences and satisfaction of cancer patients on an international level, it may enable healthcare providers to improve the quality of cancer care.

  14. PrimateLit Database: Submit Literature for Indexing

    Science.gov Websites

    Access PrimateLit Using this Site About the Project Submit Literature for Indexing Copyright Info Center WI Regional Primate Resource Center Submit Literature for Indexing PrimateLit has not been

  15. Spaces of Surveillance: Indexicality and Solicitation on the Internet.

    ERIC Educational Resources Information Center

    Elmer, Greg

    1997-01-01

    Investigates significance of the index in the process of mapping and formatting sites, spaces, and words on the Internet as well as diagnosing, tracking, and soliciting users. Argues that indexical technologies are increasingly called upon by commercial interests to automate the solicitation process whereby entry into an Internet site triggers the…

  16. Micropulse lidar-derived aerosol optical depth climatology at ARM sites worldwide

    NASA Astrophysics Data System (ADS)

    Kafle, D. N.; Coulter, R. L.

    2013-07-01

    This paper focuses on climatology of the vertical distribution of aerosol optical depth (AOD (z)) from micropulse lidar (MPL) observations for climatically different locations worldwide. For this, a large data set obtained by MPL systems operating at 532 nm during the 4 year period 2007-2010 was used to derive vertical profiles of AOD (z) by combining the corresponding AOD data as an input from an independent measurement using nearly colocated multifilter rotating shadowband radiometer (MFRSR) systems at five different U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Program sites—three permanent sites (SGP in north-central Oklahoma, at 36.6°N, 97.5°W, 320 m; TWP-Darwin in the tropical western Pacific, at 12.4°S, 130.9°E, 30 m; and NSA at Barrow on the North Slope of Alaska, at 71.3°N, 156.6°W, 8 m) and two mobile facility sites (GRW at Graciosa Island in the Azores, at 39°N, 28°W, 15 m; and FKB in the Black Forest of Germany, at 48.5°N, 8.4°E, 511 m). Therefore, amount of data used in this study is constrained by the availability of the MFRSR data. The MPL raw data were averaged for 30 s in time and 30 m in altitude. The diurnally averaged AOD (z) profiles from 4 years were combined to obtain a multiyear vertical profile of AOD (z) climatology at various ARM sites, including diurnal, day-to-day, and seasonal variabilities. Most aerosols were found to be confined to 0-2 km (approximately the planetary boundary layer region) at all sites; however, all sites exhibited measurable aerosols well above the mixed layer, with different height maxima. The entire data set demonstrates large day-to-day variability at all sites. However, there is no significant diurnal variation in AOD (z) at all sites. Significant interannual variability was observed at the SGP site. Clear seasonal variations in AOD (z) profiles exist for all five sites, but seasonal behavior was distinct. Moreover, the different seasonal variability for the lower level (0 to ~2

  17. Site Evaluation for Hardwoods

    Treesearch

    John K. Francis

    1985-01-01

    Foresters evaluate sites for an indication of potential growth and yield, for an ecological descriptor, and to correctly match the hardwood species to be planted with sites suitable for them. Site indexes measured directly from trees on the site are the preferable means of quantifying site. Because this method is not always possible, other means based on soil and...

  18. Decays AZ γ γ and ϕ →Z γ γ (ϕ =h , H ) in two-Higgs doublet models

    NASA Astrophysics Data System (ADS)

    Sánchez-Vélez, R.; Tavares-Velasco, G.

    2018-05-01

    The one-loop contributions to the decays of the C P -odd and C P -even scalar bosons AZ γ γ and ϕ →Z γ γ (ϕ =h , H ) are calculated within the framework of C P -conserving two-Higgs doublet models (THDMs), where they are induced by box and reducible Feynman diagrams. The behavior of the corresponding branching ratios are then analyzed within the type-II THDM in a region of the parameter space around the alignment limit and still consistent with experimental data. It is found that the AZ γ γ branching ratio is only relevant when mA>mH+mZ , but it is negligible otherwise. For mA>600 GeV and tβ≃O (1 ), BR (AZ γ γ ) can reach values of the order of 10-5-10-4, but it decreases by about 1 order of magnitude as tβ increases up to 10. A similar behavior is followed by the H →Z γ γ decay, which only has a non-negligible branching ratio when mH>mA+mZ and can reach the level of 10-4-10-3 for mH>600 GeV and tβ≃O (1 ). We also estimated the branching ratios of these rare decays in the type-I THDM, where they can be about 1 order of magnitude larger than in type-II THDM. As far as the h →Z γ γ decay is concerned, since the properties of this scalar boson must be nearly identical to those of the SM Higgs boson, the h →Z γ γ branching ratio does not deviate significantly from the SM prediction, where it is negligibly small, of the order of 10-9. This result is in agreement with previous calculations.

  19. Fusion in a staged Z-pinch

    NASA Astrophysics Data System (ADS)

    Wessel, F. J.; Rahman, H. U.; Ney, P.; Valenzuela, J.; Beg, F.; McKee, E.; Darling, T.

    2016-03-01

    This paper is dedicated to Norman Rostoker, our (FJW and HUR) mentor and long-term collaborator, who will always be remembered for the incredible inspiration that he has provided us. Norman's illustrious career dealt with a broad range of fundamental-physics problems and we were fortunate to have worked with him on many important topics: intense-charged-particle beams, field-reversed configurations, and Z-pinches. Rostoker 's group at the University of CA, Irvine was well known for having implemented many refinements to the Z-pinch, that make it more stable, scalable, and efficient, including the development of: the gas-puff Z-pinch [1], which provides for the use of an expanded range of pinch-load materials; the gas-mixture Z-pinch [2], which enhances the pinch stability and increases its radiation efficiency; e-beam pre-ionization [3], which enhances the uniformity of the initial-breakdown process in a gas pinch; magnetic-flux-compression [4, 5], which allows for the amplification of an axial-magnetic field Bz; the Z-θ pinch [6], which predicts fusion in a pinch-on-fiber configuration; the Staged Z-pinch (SZP) [7], which allows for the amplification of the pinch self-magnetic field, Bθ , in addition to a Bz, and leads to a stable implosion and high-gain fusion [8, 9, 10]. This paper describes the physical basis for a magneto-inertial compression in a liner-on-target SZP [11]. Initially a high-atomic-number liner implodes under the action of the J →×B → , Lorentz Force. As the implosion becomes super Alfvénic, magnetosonic waves form, transporting current and magnetic field through the liner toward the interface of the low-atomic-number target. The target implosion remains subsonic with its surface bounded by a stable-shock front. Shock waves that pass into the target provide a source of target plasma pre-heat. At peak compression the assembly is compressed by liner inertia, with flux compression producing an intense-magnetic field near the target

  20. Africa's largest long-lasting insecticide-treated net producer: lessons from A to Z Textiles

    PubMed Central

    2010-01-01

    Background Field trials have demonstrated the efficacy of insecticide-treated nets, and the WHO has recently endorsed a shift toward Long-Lasting Insecticide Treated nets (LLINs) due to factors such as reduced distribution costs. However, the need for LLINs poses several challenges. Is it possible to manufacture LLINs in large quantities in the African continent, where malaria is most endemic? When production is located in low-income countries, what role is played by local funding and employment, scaling up manufacturing, and partnerships? What factors influence availability and pricing? Discussion A case study of A to Z Textiles was undertaken to answer the question of how large-scale production of LLINs can occur in a low income setting. One of the largest sources of bed nets for Africa, A to Z Textiles is Africa-based, and its Tanzanian operations have a production capacity of 30 million LLINs per year, along with full WHO recommendation for its nets. Our analysis is based on semi-structured interviews with key informants familiar with A to Z, site visits in Tanzania, and literature reviews. This paper discusses the history and current status of A to Z Textiles, identifies the factors that led to its success, and suggests policy considerations that could support similar initiatives in the future. Local funding, scaling up manufacturing, technology transfer, and partnerships all played important roles in A to Z’s ascent, as did perceived benefits of local employment and capacity-building. Regulatory issues and procurement rules acted as barriers. A to Z cost-effectively manufactures high-quality LLINs where malaria is most endemic. Summary With a production capacity of 30 million LLINs per year, and full WHOPES (WHO Pesticide Evaluation Scheme) certification, A to Z Textiles demonstrates how key health goods can be successfully produced in the low-income countries that use them. Its example may be instructive and of high interest to readers in the malaria

  1. A method of site quality evaluation for red alder.

    Treesearch

    Constance A. Harrington

    1986-01-01

    A field guide to predict site index for red alder (Alnus rubra Bong.) was developed for use in western Washington and Oregon. The guide requires the user to evaluate 14 soil-site properties that are grouped into three general factors: (1) geographic and topographic position, (2) soil moisture and aeration during the growing season, and (3) soil fertility and physical...

  2. Estimating northern red oak site-index class from total height and diameter of dominant and codominant trees in central Appalachian hardwood stands

    Treesearch

    Neil I. Lamson; Neil I. Lamson

    1987-01-01

    Northern red oak site-index (SI) class is estimated using height and diameter of dominant and codominant trees for five Appalachian hardwood species. Methods for predicting total height as a function of diameter are presented. Because total height of 4- and 6-inch trees varies less than 5 feet for the three northern red oak SI classes, use trees that are at least 8...

  3. The electronic, structural and magnetic properties of Heusler compounds ZrCrCoZ(Z=B, Al, Ga, In): A first-principles study

    NASA Astrophysics Data System (ADS)

    Guo, R. K.; Liu, G. D.; Lin, T. T.; Wang, W.; Wang, L. Y.; Dai, X. F.

    2018-02-01

    It is predicted that the ZrCrCoZ(Z=B, Al, Ga, In) compounds with LiMnPbSn-type structure are half-metallic ferrimagnets with a large half-metallic gap by the first-principles calculations. The half-metallicity of the ZrCrCoZ(Z=B, Al, Ga, In) compounds are quite robust to the axial and uniaxial strain. The total magnetic moments in per unit cell are 4 μB for the ZrCrCoZ(Z=B, Al, Ga, In) compounds and follow the Slater-Pauling rule, which can be attributed to the great spin-splitting. The calculated formation energies are negative for all the ZrCrCoZ(Z=B, Al, Ga, In) compounds, which indicates that those compounds are in the thermodynamic stability and the possibility of synthesis in experiment.

  4. Flavor-changing Z decays: A window to ultraheavy quarks?

    NASA Astrophysics Data System (ADS)

    Ganapathi, V.; Weiler, T.; Laermann, E.; Schmitt, I.; Zerwas, P. M.

    1983-02-01

    We study flavor-changing Z decays into quarks, Z-->Q+q¯, in the standard SU(2)×U(1) theory with sequential generations. Such decays occur in higher-order electroweak interactions, with a probability growing as the fourth power of the mass of the heaviest (virtual) quark mediating the transition. With the possible exception of Z-->bs¯, these decay modes are generally very rare in the three-generation scheme. However, with four generations Z-->b'b¯ is observable if the t' mass is a few hundred GeV. Such decay modes could thus provide a glimpse of the ultraheavy-quark spectrum.

  5. Use of annual phosphorus loss estimator (APLE) model to evaluate a phosphorus index

    USDA-ARS?s Scientific Manuscript database

    Maryland’s Phosphorus Site Index (MD-PSI) has been used to guide management decisions to minimize the potential for phosphorus (P) loss from agricultural fields in Maryland since 2002. The index was recently revised and renamed the University of Maryland Phosphorus Management Tool (UM-PMT), and the...

  6. Binding of a small molecule water channel inhibitor to aquaporin Z examined by solid-state MAS NMR.

    PubMed

    Phillips, Margaret; To, Janet; Yamazaki, Toshio; Nagashima, Toshio; Torres, Jaume; Pervushin, Konstantin

    2018-06-18

    Aquaporins are integral membrane proteins that facilitate water flow across biological membranes. Their involvement in multiple physiological functions and disease states has prompted intense research to discover water channel activity modulators. However, inhibitors found so far are weak and/or lack specificity. For organic compounds, which lack of high electron-dense atoms, the identification of binding sites is even more difficult. Nuclear magnetic resonance spectroscopy (NMR) requires large amounts of the protein, and expression and purification of mammalian aquaporins in large quantities is a difficult task. However, since aquaporin Z (AqpZ) can be purified and expressed in good quantities and has a high similarity to human AQP1 (~ 40% identity), it can be used as a model for studying the structure and function of human aquaporins. In the present study, we have used solid-state MAS NMR to investigate the binding of a lead compound [1-(4-methylphenyl)1H-pyrrole-2,5-dione] to AqpZ, through mapping of chemical shift perturbations in the presence of the compound.

  7. Oak soil-site relationships in northwestern West Virginia

    Treesearch

    L.R. Auchmoody; H. Clay Smith

    1979-01-01

    An oak soil-site productivity equation was developed for the well-drained, upland soils in the northwestern portion of West Virginia adjacent to the Ohio River. The equation uses five easily measured soil and topographic variables and average precipitation to predict site index. It accounts for 69 percent of the variation in oak site index and has a standard error of 4...

  8. An in vitro bioassay for xenobiotics using the SXR-driven human CYP3A4/lacZ reporter gene.

    PubMed

    Lee, Mi R; Kim, Yeon J; Hwang, Dae Y; Kang, Tae S; Hwang, Jin H; Lim, Chae H; Kang, Hyung K; Goo, Jun S; Lim, Hwa J; Ahn, Kwang S; Cho, Jung S; Chae, Kap R; Kim, Yong K

    2003-01-01

    The dose and time effect of nine xenobiotics, including 17beta-estradiol, corticosterone, dexamethasone, progesterone, nifedipine, bisphenol A, rifampicin, methamphetamine, and nicotine were investigated, in vitro, using human steroid and xenobiotics receptor (SXR)-binding sites on the human CYP3A4 promoter, which can enhance the linked lacZ reporter gene transcription. To test this, liver-specific SAP (human serum amyloid P component)-SXR (SAP/SXR) and human CYP3A4 promoter-regulated lacZ (hCYP3A4/lacZ) constructs were transiently transfected into HepG2 and NIH3T3 cells to compare the xenobiotic responsiveness between human and nonhuman cell lines. In the HepG2 cells, rifampicin, followed by corticosterone, nicotine, methamphetamine, and dexamethasone, exhibited enhanced levels of the lacZ transcript, whereas those of bisphenol A and nifedipine were found to be reduced. No significant responses were observed with 17beta-estradiol or progesterone. In addition, 17beta-estradiol and progesterone did not change the levels of the lacZ transcripts in the HepG2 cells, but did induce significant increases in the transcripts of the NIH3T3 cells. Treatment with corticosterone and dexamethasone, which were highly expressed in the HepG2 cells, did not affect the levels of the lacZ transcript in NIH3T3 cells. These results show that lacZ transcripts can be measured, rapidly and reproducibly, using reverse transcriptase-polymerase chain reaction (RT-PCR) based on the expression of the hCYP3A4/lacZ reporter gene, and was mediated by the SXR. Thus, this in vitro reporter gene bioassay is useful for measuring xenobiotic activities, and is a means to a better relevant bioassay, using human cells, human genes and human promoters, in order to get a closer look at actual human exposure.

  9. Comparing the index-flood and multiple-regression methods using L-moments

    NASA Astrophysics Data System (ADS)

    Malekinezhad, H.; Nachtnebel, H. P.; Klik, A.

    In arid and semi-arid regions, the length of records is usually too short to ensure reliable quantile estimates. Comparing index-flood and multiple-regression analyses based on L-moments was the main objective of this study. Factor analysis was applied to determine main influencing variables on flood magnitude. Ward’s cluster and L-moments approaches were applied to several sites in the Namak-Lake basin in central Iran to delineate homogeneous regions based on site characteristics. Homogeneity test was done using L-moments-based measures. Several distributions were fitted to the regional flood data and index-flood and multiple-regression methods as two regional flood frequency methods were compared. The results of factor analysis showed that length of main waterway, compactness coefficient, mean annual precipitation, and mean annual temperature were the main variables affecting flood magnitude. The study area was divided into three regions based on the Ward’s method of clustering approach. The homogeneity test based on L-moments showed that all three regions were acceptably homogeneous. Five distributions were fitted to the annual peak flood data of three homogeneous regions. Using the L-moment ratios and the Z-statistic criteria, GEV distribution was identified as the most robust distribution among five candidate distributions for all the proposed sub-regions of the study area, and in general, it was concluded that the generalised extreme value distribution was the best-fit distribution for every three regions. The relative root mean square error (RRMSE) measure was applied for evaluating the performance of the index-flood and multiple-regression methods in comparison with the curve fitting (plotting position) method. In general, index-flood method gives more reliable estimations for various flood magnitudes of different recurrence intervals. Therefore, this method should be adopted as regional flood frequency method for the study area and the Namak-Lake basin

  10. Use of plant indicators as an index to site quality

    Treesearch

    Marinus Westveld

    1954-01-01

    In any discussion of site evaluation we need to know first what the forester means by the term "site", and the function site serves in the field of forestry. The term may mean different things to different people.

  11. A site model for Pyrenean oak (Quercus pyrenaica) stands using a dynamic algebraic difference equation

    Treesearch

    Joao P. Carvalho; Bernard R. Parresol

    2005-01-01

    This paper presents a growth model for dominant-height and site-quality estimations for Pyrenean oak (Quercus pyrenaica Willd.) stands. The Bertalanffy–Richards function is used with the generalized algebraic difference approach to derive a dynamic site equation. This allows dominant-height and site-index estimations in a compatible way, using any...

  12. SHARDS: A Global View of the Star Formation Activity at z ~ 0.84 and z ~ 1.23

    NASA Astrophysics Data System (ADS)

    Cava, Antonio; Pérez-González, Pablo G.; Eliche-Moral, M. Carmen; Ricciardelli, Elena; Vidal-García, Alba; Alcalde Pampliega, Belen; Alonso-Herrero, Almudena; Barro, Guillermo; Cardiel, Nicolas; Cenarro, A. Javier; Charlot, Stephane; Daddi, Emanuele; Dessauges-Zavadsky, Miroslava; Domínguez Sánchez, Helena; Espino-Briones, Nestor; Esquej, Pilar; Gallego, Jesus; Hernán-Caballero, Antonio; Huertas-Company, Marc; Koekemoer, Anton M.; Muñoz-Tunon, Casiana; Rodriguez-Espinosa, Jose M.; Rodríguez-Muñoz, Lucia; Tresse, Laurence; Villar, Victor

    2015-10-01

    In this paper, we present a comprehensive analysis of star-forming galaxies (SFGs) at intermediate redshifts (z ˜ 1). We combine the ultra-deep optical spectro-photometric data from the Survey for High-z Absorption Red and Dead Sources (SHARDS) with deep UV-to-FIR observations in the GOODS-N field. Exploiting two of the 25 SHARDS medium-band filters, F687W17 and F823W17, we select [O ii] emission line galaxies at z ˜ 0.84 and z ˜ 1.23 and characterize their physical properties. Their rest-frame equivalent widths (EWrf([O ii])), line fluxes, luminosities, star formation rates (SFRs), and dust attenuation properties are investigated. The evolution of EWrf([O ii]) closely follows the SFR density evolution of the universe, with a trend of EWrf([O ii]) \\propto (1 + z)3 up to redshift z ≃ 1, followed by a possible flattening. The SF properties of the galaxies selected on the basis of their [O ii] emission are compared with complementary samples of SFGs selected by their MIR and FIR emission, and also with a general mass-selected sample of galaxies at the same redshifts. We demonstrate observationally that the UVJ diagram (or, similarly, a cut in the specific SFR) is only partially able to distinguish the quiescent galaxies from the SFGs. The SFR-M* relation is investigated for the different samples, yielding a logarithmic slope ˜1, in good agreement with previous results. The dust attenuations derived from different SFR indicators (UV(1600), UV(2800), [O ii], IR) are compared and show clear trends with respect to both the stellar mass and total SFR, with more massive and highly star-forming galaxies being affected by stronger dust attenuation.

  13. The Structure of Massive Quiescent Galaxies at Z ~ 3 in the CANDELS-COSMOS Field

    NASA Astrophysics Data System (ADS)

    Fan, Lulu; Fang, Guanwen; Chen, Yang; Pan, Zhizheng; Lv, Xuanyi; Li, Jinrong; Lin, Lin; Kong, Xu

    2013-07-01

    In this Letter, we use a two-color (J - L) versus (V - J) selection criterion to search massive quiescent galaxy (QG) candidates at 2.5 <= z <= 4.0 in the CANDELS-COSMOS field. We construct an H F160W-selected catalog and complement it with public auxiliary data. We finally obtain 19 passive VJL-selected (hereafter pVJL) galaxies as the possible massive QG candidates at z ~ 3 by several constrains. We find the sizes of our pVJL galaxies are on average three to four times smaller than those of local early-type galaxies (ETGs) with analogous stellar mass. The compact size of these z ~ 3 galaxies can be modeled by assuming their formation at z form ~ 4-6 according to the dissipative collapse of baryons. Up to z < 4, the mass-normalized size evolution can be described by re vprop(1 + z)-1.0. Low Sérsic index and axis ratio, with median values n ~1.5 and b/a ~ 0.65, respectively, indicate that most of the pVJL galaxies are disk-dominated. Despite large uncertainty, the inner region of the median mass profile of our pVJL galaxies is similar to those of QGs at 0.5 < z < 2.5 and local ETGs. It indicates that local massive ETGs have been formed according to an inside-out scenario: the compact galaxies at high redshift make up the cores of local massive ETGs and then build up the outskirts according to dissipationless minor mergers.

  14. Orbifold Schur index and IR formula

    NASA Astrophysics Data System (ADS)

    Imamura, Yosuke

    2018-04-01

    We discuss an orbifold version of the Schur index defined as the supersymmetric partition function in S^3/{Z}_n×{S}^1. We first give a general formula for Lagrangian theories obtained by the localization technique, and then suggest a generalization of the Cordova and Shao IR formula. We confirm that the generalized IR formula gives the correct answer for systems with free hypermultiplets if we tune the background fields so that they are invariant under the orbifold action. Unfortunately, we find disagreement for theories with dynamical vector multiplets.

  15. ZZ2 generalizations of 𝒩 =2 super Schrödinger algebras and their representations

    NASA Astrophysics Data System (ADS)

    Aizawa, N.; Segar, J.

    2017-11-01

    We generalize the real and chiral N =2 super Schrödinger algebras to ZZ2-graded Lie superalgebras. This is done by D-module presentation, and as a consequence, the D-module presentations of ZZ2-graded superalgebras are identical to the ones of super Schrödinger algebras. We then generalize the calculus over the Grassmann number to ZZ2 setting. Using it and the standard technique of Lie theory, we obtain a vector field realization of ZZ2-graded superalgebras. A vector field realization of the ZZ2 generalization of N =1 super Schrödinger algebra is also presented.

  16. A new transmission risk index for human African trypanosomiasis and its application in the identification of sites of high transmission of sleeping sickness in the Fontem focus of southwest Cameroon.

    PubMed

    Njitchouang, G R; Njiokou, F; Nana-Djeunga, H; Asonganyi, T; Fewou-Moundipa, P; Cuny, G; Simo, G

    2011-09-01

    A new index for the risk for transmission of human African trypanosomiasis was developed from an earlier index by adding terms for the proportion of tsetse infected with Trypanosoma brucei gambiense group 1 and the contribution of animals to tsetse diet. The validity of the new index was then assessed in the Fontem focus of southwest Cameroon. Averages of 0.66 and 4.85 Glossina palpalis palpalis (Diptera: Glossinidae) were caught per trap/day at the end of one rainy season (November) and the start of the next (April), respectively. Of 1596 tsetse flies examined, 4.7% were positive for Trypanosoma brucei s.l. midgut infections and 0.6% for T. b. gambiense group 1. Among 184 bloodmeals identified, 55.1% were from pigs, 25.2% from humans, 17.6% from wild animals and 1.2% from goats. Of the meals taken from humans, 81.5% were taken at sites distant from pigsties. At the end of the rainy season, catches were low and similar between biotopes distant from and close to pigsties, but the risk for transmission was greatest at sites distant from the sties, suggesting that the presence of pigs reduced the risk to humans. At the beginning of the rainy season, catches of tsetse and risk for transmission were greatest close to the sties. In all seasons, there was a strong correlation between the old and new indices, suggesting that both can be used to estimate the level of transmission, but as the new index is the more comprehensive, it may be more accurate. © 2010 The Authors. Medical and Veterinary Entomology © 2010 The Royal Entomological Society.

  17. A Test of Maxwell's Z Model Using Inverse Modeling

    NASA Technical Reports Server (NTRS)

    Anderson, J. L. B.; Schultz, P. H.; Heineck, T.

    2003-01-01

    In modeling impact craters a small region of energy and momentum deposition, commonly called a "point source", is often assumed. This assumption implies that an impact is the same as an explosion at some depth below the surface. Maxwell's Z Model, an empirical point-source model derived from explosion cratering, has previously been compared with numerical impact craters with vertical incidence angles, leading to two main inferences. First, the flowfield center of the Z Model must be placed below the target surface in order to replicate numerical impact craters. Second, for vertical impacts, the flow-field center cannot be stationary if the value of Z is held constant; rather, the flow-field center migrates downward as the crater grows. The work presented here evaluates the utility of the Z Model for reproducing both vertical and oblique experimental impact data obtained at the NASA Ames Vertical Gun Range (AVGR). Specifically, ejection angle data obtained through Three-Dimensional Particle Image Velocimetry (3D PIV) are used to constrain the parameters of Maxwell's Z Model, including the value of Z and the depth and position of the flow-field center via inverse modeling.

  18. Methods of Making Z-Shielding

    NASA Technical Reports Server (NTRS)

    Thomsen, III, Donald Laurence (Inventor); Cano, Roberto J. (Inventor); Jensen, Brian J. (Inventor); Hales, Stephen J. (Inventor); Alexa, Joel A. (Inventor)

    2014-01-01

    Methods of building Z-graded radiation shielding and covers. In one aspect, the method includes: providing a substrate surface having about medium Z-grade; plasma spraying a first metal having higher Z-grade than the substrate surface; and infusing a polymer layer to form a laminate. In another aspect, the method includes electro/electroless plating a first metal having higher Z-grade than the substrate surface. In other aspects, the methods include improving an existing electronics enclosure to build a Z-graded radiation shield by applying a temperature controller to at least part of the enclosure and affixing at least one layer of a first metal having higher Z-grade from the enclosure.

  19. Bulgeless galaxies in the COSMOS field: environment and star formation evolution at z < 1

    NASA Astrophysics Data System (ADS)

    Grossi, Marco; Fernandes, Cristina A. C.; Sobral, David; Afonso, José; Telles, Eduardo; Bizzocchi, Luca; Paulino-Afonso, Ana; Matute, Israel

    2018-03-01

    Combining the catalogue of galaxy morphologies in the COSMOS field and the sample of H α emitters at redshifts z = 0.4 and z = 0.84 of the HiZELS survey, we selected ˜ 220 star-forming bulgeless systems (Sérsic index n ≤ 1.5) at both epochs. We present their star formation properties and we investigate their contribution to the star formation rate function (SFRF) and global star formation rate density (SFRD) at z < 1. For comparison, we also analyse H α emitters with more structurally evolved morphologies that we split into two classes according to their Sérsic index n: intermediate (1.5 < n ≤ 3) and bulge-dominated (n > 3). At both redshifts, the SFRF is dominated by the contribution of bulgeless galaxies and we show that they account for more than 60 per cent of the cosmic SFRD at z < 1. The decrease of the SFRD with redshift is common to the three morphological types, but it is stronger for bulge-dominated systems. Star-forming bulgeless systems are mostly located in regions of low to intermediate galaxy densities (Σ ˜ 1-4 Mpc-2) typical of field-like and filament-like environments and their specific star formation rates (sSFRs) do not appear to vary strongly with local galaxy density. Only few bulgeless galaxies in our sample have high (sSFR > 10-9 yr-1) and these are mainly low-mass systems. Above M* ˜ 1010 M⊙ bulgeless are evolving at a `normal' rate (10-9 yr-1 < sSFR < 10-10 yr-1) and in the absence of an external trigger (i.e. mergers/strong interactions) they might not be able to develop a central classical bulge.

  20. Global constraints on Z2 fluxes in two different anisotropic limits of a hypernonagon Kitaev model

    NASA Astrophysics Data System (ADS)

    Kato, Yasuyuki; Kamiya, Yoshitomo; Nasu, Joji; Motome, Yukitoshi

    2018-05-01

    The Kitaev model is an exactly-soluble quantum spin model, whose ground state provides a canonical example of a quantum spin liquid. Spin excitations from the ground state are fractionalized into emergent matter fermions and Z2 fluxes. The Z2 flux excitation is pointlike in two dimensions, while it comprises a closed loop in three dimensions because of the local constraint for each closed volume. In addition, the fluxes obey global constraints involving (semi)macroscopic number of fluxes. We here investigate such global constraints in the Kitaev model on a three-dimensional lattice composed of nine-site elementary loops, dubbed the hypernonagon lattice, whose ground state is a chiral spin liquid. We consider two different anisotropic limits of the hypernonagon Kitaev model where the low-energy effective models are described solely by the Z2 fluxes. We show that there are two kinds of global constraints in the model defined on a three-dimensional torus, namely, surface and volume constraints: the surface constraint is imposed on the even-odd parity of the total number of fluxes threading a two-dimensional slice of the system, while the volume constraint is for the even-odd parity of the number of the fluxes through specific plaquettes whose total number is proportional to the system volume. In the two anisotropic limits, therefore, the elementary excitation of Z2 fluxes occurs in a pair of closed loops so as to satisfy both two global constraints as well as the local constraints.

  1. An Analytical Index to the Internet: Dreams of Utopia.

    ERIC Educational Resources Information Center

    Casey, Carol

    1999-01-01

    Explores the need for analytical indexes to access Internet resources. Considers bibliographic control, Web site design, keyword search engines, hierarchical subject indexes, and special indexes and compilations of links, and concludes that the creation of small, focused indexes may be the best solution for accessing specific types of digital…

  2. Performance analyses of Z-source and quasi Z-source inverter for photovoltaic applications

    NASA Astrophysics Data System (ADS)

    Himabind, S.; Priya, T. Hari; Manjeera, Ch.

    2018-04-01

    This paper presents the comparative analysis of Z-source and Quasi Z-source converter for renewable energy applications. Due to the dependency of renewable energy sources on external weather conditions the output voltage, current changes accordingly which effects the performance of traditional voltage source and current source inverters connected across it. To overcome the drawbacks of VSI and CSI, Z-source and Quasi Z-source inverter (QZSI) are used, which can perform multiple tasks like ac-to-dc, dc-to-ac, ac-to-ac, dc-to-dc conversion. They can be used for both buck and boost operations, by utilizing the shoot-through zero state. The QZSI is derived from the ZSI topology, with a slight change in the impedance network and it overcomes the drawbacks of ZSI. The QZSI draws a constant current from the source when compared to ZSI. A comparative analysis is performed between Z-source and Quasi Z-source inverter, simulation is performed in MATLAB/Simulink environment.

  3. A child feeding index is superior to WHO IYCF indicators in explaining length-for-age Z-scores of young children in rural Cambodia

    PubMed Central

    Reinbott, Anika; Kuchenbecker, Judith; Herrmann, Johannes; Jordan, Irmgard; Muehlhoff, Ellen; Kevanna, Ou; Krawinkel, Michael

    2015-01-01

    Background: Adequate young child feeding practices are influenced by a multitude of factors which affect growth and development. A combination of indicators is needed to explain the role of complementary feeding practices in growth retardation. Methods: A cross-sectional nutrition baseline survey was conducted in rural Cambodia in September 2012. Villages in pre-selected communes were randomly selected using stunting as a primary indicator. Data were collected from 803 randomly selected households with children aged 6–23 months, based on a standardised questionnaire and on length/height and weight measurements of mother and child. WHO Infant and Young Child Feeding (IYCF) indicators [minimum dietary diversity (MDD), minimum meal frequency (MMF), minimum acceptable diet (MAD)] and a child feeding index (CFI) were created. The latter consisted of five components: breastfeeding, use of bottle, dietary diversity, food frequency and meal frequency which were adjusted for three age groups: 6–8, 9–11 and 12–23 months. The highest possible score was 10. Associations between length-for-age Z-scores (LAZ) and WHO indicators or CFI were explored. Results: Mean (SD) LAZ was −1.25 (1.14) (n  =  801). Mean (range) CFI was 6.7 (1–10) (n  =  797). Mean CFI was highest in the 9–11-months age group (7.93) and lowest for those aged 12–23 months (5.96). None of the WHO IYCF indicators was associated with LAZ, whereas CFI showed significant association with LAZ (P < 0.01). The association between higher CFI scores and LAZ became weaker as age increased. Conclusion: The results highlight the need to include a wide range of information in the analysis in order to understand the association between appropriate infant feeding practices and child growth. PMID:25226288

  4. Incidence of surgical-site infections and the validity of the National Nosocomial Infections Surveillance System risk index in a general surgical ward in Santa Cruz, Bolivia.

    PubMed

    Soleto, Lorena; Pirard, Marianne; Boelaert, Marleen; Peredo, Remberto; Vargas, Reinerio; Gianella, Alberto; Van der Stuyft, Patrick

    2003-01-01

    To estimate the frequency of and risk factors for surgical-site infections (SSIs) in Bolivia, and to study the performance of the National Nosocomial Infections Surveillance (NNIS) System risk index in a developing country. A prospective study with patient follow-up until the 30th postoperative day. A general surgical ward of a public hospital in Santa Cruz, Bolivia. Patients admitted to the ward between July 1998 and June 1999 on whom surgical procedures were performed. Follow-up was complete for 91.5% of 376 surgical procedures. The overall SSI rate was 12%. Thirty-four (75.6%) of the 45 SSIs were culture positive. A logistic regression model retained an American Society of Anesthesiologists score of more than 1 (odds ratio [OR], 1.87), a not-clean wound class (OR, 2.28), a procedure duration of more than 1 hour (OR, 1.81), and drain (OR, 1.98) as independent risk factors for SSI. There was no significant association between the NNIS System risk index and SSI rates. However, a "local" risk index constructed with the above cutoff points showed a linear trend with SSI (P < .001) and a relative risk of 3.18 for risk class 3 versus a class of less than 3. SSIs cause considerable morbidity in Santa Cruz. Appropriate nosocomial infection surveillance and control should be introduced. The NNIS System risk index did not discriminate between patients at low and high risk for SSI in this hospital setting, but a risk score based on local cutoff points performed substantially better.

  5. Is there a better metric than site index to indicate the productivity of forested lands?

    Treesearch

    Maria E. Blanco Martin; Michael Hoppus; Andrew Lister; James A. Westfall

    2009-01-01

    The Forest Service, U.S. Department of Agriculture's Forest Inventory and Analysis (FIA) program selects site trees for each plot that are used to measure site productivity. The ability of a site to produce wood volume is indicated indirectly by comparing total tree height with tree age. This comparison assumes that the rate of height growth is strongly related to...

  6. A search for lepton flavour violation in Z 0 decays

    NASA Astrophysics Data System (ADS)

    Akrawy, M. Z.; Alexander, G.; Allison, J.; Allport, P. P.; Anderson, K. J.; Armitage, J. C.; Arnison, G. T. J.; Ashton, P.; Azuelos, G.; Baines, J. T. M.; Ball, A. H.; Banks, J.; Barker, G. J.; Barlow, R. J.; Batley, J. R.; Beck, A.; Becker, J.; Behnke, T.; Bell, K. W.; Bella, G.; Bethke, S.; Biebel, O.; Binder, U.; Bloodworth, I. J.; Bock, P.; Breuker, H.; Brown, R. M.; Brun, R.; Buijs, A.; Burckhart, H. J.; Capiluppi, P.; Carnegie, R. K.; Carter, A. A.; Carter, J. R.; Chang, C. Y.; Charlton, D. G.; Chrin, J. T. M.; Clarke, P. E. L.; Cohen, I.; Collins, W. J.; Conboy, J. E.; Couch, M.; Coupland, M.; Cuffiani, M.; Dado, S.; Dallavalle, G. M.; Debu, P.; Deninno, M. M.; Dieckmann, A.; Dittmar, M.; Dixit, M. S.; Duchovni, E.; Duerdoth, I. P.; Dumas, D. J. P.; Elcombe, P. A.; Estarbrooks, P. G.; Etzion, E.; Fabbri, F.; Farthouat, P.; Fischer, H. M.; Fong, D. G.; French, M. T.; Fukunaga, C.; Gaidot, A.; Ganel, O.; Gary, J. W.; Gascon, J.; Geddes, N. I.; Gee, C. N. P.; Geich-Gimbel, C.; Gensler, S. W.; Gentit, F. X.; Giacomelli, G.; Gibson, V.; Gibson, W. R.; Gillies, J. D.; Goldberg, J.; Goodrick, M. J.; Gorn, W.; Granite, D.; Gross, E.; Grunhaus, J.; Hagedorn, H.; Hagemann, J.; Hansroul, M.; Hargrove, C. K.; Harrus, I.; Hart, J.; Hattersley, P. M.; Hauschild, M.; Hawkes, C. M.; Heflin, E.; Hemingway, R. J.; Heuer, R. D.; Hill, J. C.; Hillier, S. J.; Ho, C.; Hobbs, J. D.; Hobson, P. R.; Hochman, D.; Holl, B.; Homer, R. J.; Hou, S. R.; Howarth, C. P.; Hughes-Jones, R. E.; Humbert, R.; Igo-Kemenes, P.; Ihssen, H.; Imrie, D. C.; Janissen, L.; Jawahery, A.; Jeffreys, P. W.; Jeremie, H.; Jimack, M.; Jobes, M.; Jones, R. W. L.; Jovanovic, P.; Karlen, D.; Kawagoe, K.; Kawamoto, T.; Kellogg, R. G.; Kennedy, B. W.; Kleinwort, C.; Klem, D. E.; Knop, G.; Kobayashi, T.; Kokott, T. P.; Köpke, L.; Kowalewski, R.; Kreutzmann, H.; Kroll, J.; Kuwano, M.; Kyberd, P.; Lafferty, G. D.; Lamarche, F.; Larson, W. J.; Layter, J. G.; Le Du, P.; Leblanc, P.; Lee, A. M.; Lehto, M. H.; Lellouch, D.; Lennert, P.; Lessard, L.; Levinson, L.; Lloyd, S. L.; Loebinger, F. K.; Lorah, J. M.; Lorazo, B.; Losty, M. J.; Ludwig, J.; Ma, J.; Macbeth, A. A.; Mannelli, M.; Marcellino, S.; Maringer, G.; Martin, A. J.; Martin, J. P.; Mashimo, T.; Mättig, P.; Maur, U.; McMahon, T. J.; McNutt, J. R.; Meijers, F.; Menszner, D.; Merritt, F. S.; Mes, H.; Michelini, A.; Middleton, R. P.; Mikenberg, G.; Mildenberger, J.; Miller, D. J.; Milstene, C.; Minowa, M.; Mohr, W.; Montanari, A.; Mori, T.; Moss, M. W.; Murphy, P. G.; Murray, W. J.; Nellen, B.; Nguyen, H. H.; Nozaki, M.; O'Dowd, A. J. P.; O'Neale, S. W.; O'Neill, B. P.; Oakham, F. G.; Odorici, F.; Ogg, M.; Oh, H.; Oreglia, M. J.; Orito, S.; Pansart, J. P.; Patrick, G. N.; Pawley, S. J.; Pfister, P.; Pilcher, J. E.; Pinfold, J. L.; Plane, D. E.; Poli, B.; Pouladdej, A.; Prebys, E.; Pritchard, T. W.; Quast, G.; Raab, J.; Redmond, M. W.; Rees, D. L.; Regimbald, M.; Riles, K.; Roach, C. M.; Robins, S. A.; Rollnik, A.; Roney, J. M.; Rossberg, S.; Rossi, A. M.; Routenburg, P.; Runge, K.; Runolfsson, O.; Sanghera, S.; Sansum, R. A.; Sasaki, M.; Saunders, B. J.; Schaile, A. D.; Schaile, O.; Schappert, W.; Scharff-Hansen, P.; Schreiber, S.; Schwarz, J.; Shapira, A.; Shen, B. C.; Sherwood, P.; Simon, A.; Singh, P.; Siroli, G. P.; Skuja, A.; Smith, A. M.; Smith, T. J.; Snow, G. A.; Springer, R. W.; Sproston, M.; Stephens, K.; Stier, H. E.; Stroehmer, R.; Strom, D.; Takeda, H.; Takeshita, T.; Taras, P.; Thackray, N. J.; Tsukamoto, T.; Turner, M. F.; Tysarczyk-Niemeyer, G.; Van den plas, D.; VanDalen, G. J.; Van Kooten, R.; Vasseur, G.; Virtue, C. J.; von der Schmitt, H.; von Krogh, J.; Wagner, A.; Wahl, C.; Walker, J. P.; Ward, C. P.; Ward, D. R.; Watkins, P. M.; Watson, A. T.; Watson, N. K.; Weber, M.; Weisz, S.; Wells, P. S.; Wermes, N.; Weymann, M.; Wilson, G. W.; Wilson, J. A.; Wingerter, I.; Winterer, V.-H.; Wood, N. C.; Wotton, S.; Wuensch, B.; Wyatt, T. R.; Yaari, R.; Yang, Y.; Yekutieli, G.; Yoshida, T.; Zeuner, W.; Zorn, G. T.; OPAL Collaboration

    1991-01-01

    We have searched for lepton flavour violation in about 14000 Z 0 decays into collinear lepton pairs, recorded in an energy scan around the Z 0 resonance. Decays of the type Z0→ eτ, Z0→ μτ and Z0→ eμ have been considered. Observed candidates in the eτ and μτ modes are consistent with expected Z0→ τ+τ- backgrounds; no candidates are observed for the eμ mode. We obtain limits (at 95% confidence level) on the branching ratios for such Z 0 decays of 7.2×10 -5 for the eτ decay, 35×10 -5 for the μτ decay and 4.6×10 -5 for the eμ decay.

  7. Analysis of ILRS Site Ties

    NASA Astrophysics Data System (ADS)

    Husson, V. S.; Long, J. L.; Pearlman, M.

    2001-12-01

    By the end of 2000, 94% of ILRS stations had completed station and site information forms (i.e. site logs). These forms contain six types of information. These six categories include site identifiers, contact information, approximate coordinates, system configuration history, system ranging capabilities, and local survey ties. The ILRS Central Bureau, in conjunction with the ILRS Networks and Engineering Working Group, has developed procedures to quality control site log contents. Part of this verification entails data integrity checks of local site ties and is the primary focus of this paper. Local survey ties are critical to the combination of space geodetic network coordinate solutions (i.e. GPS, SLR, VLBI, DORIS) of the International Terrestrial Reference Frame (ITRF). Approximately 90% of active SLR sites are collocated with at least one other space geodetic technique. The process used to verify these SLR ties, at collocated sites, is identical to the approach used in ITRF2000. Local vectors (X, Y, Z) from each ILRS site log are differenced from its corresponding ITRF2000 position vectors (i.e. no transformations). These X, Y, and Z deltas are converted into North, East, and Up. Any deltas, in any component, larger than 5 millimeter is flagged for investigation. In the absence of ITRF2000 SLR positions, CSR positions were used. To further enhance this comparison and to fill gaps in information, local ties contained in site logs from the other space geodetic services (i.e. IGS, IVS, IDS) were used in addition to ITRF2000 ties. Case studies of two collocated sites (McDonald/Ft. Davis and Hartebeeshtoek) will be explored in-depth. Recommendations on how local site surveys should be conducted and how this information should be managed will also be presented.

  8. Biological roles and functional mechanisms of arenavirus Z protein in viral replication.

    PubMed

    Wang, Jialong; Danzy, Shamika; Kumar, Naveen; Ly, Hinh; Liang, Yuying

    2012-09-01

    Arenaviruses can cause severe hemorrhagic fever diseases in humans, with limited prophylactic or therapeutic measures. A small RING-domain viral protein Z has been shown to mediate the formation of virus-like particles and to inhibit viral RNA synthesis, although its biological roles in an infectious viral life cycle have not been directly addressed. By taking advantage of the available reverse genetics system for a model arenavirus, Pichinde virus (PICV), we provide the direct evidence for the essential biological roles of the Z protein's conserved residues, including the G2 myristylation site, the conserved C and H residues of RING domain, and the poorly characterized C-terminal L79 and P80 residues. Dicodon substitutions within the late (L) domain (PSAPPYEP) of the PICV Z protein, although producing viable mutant viruses, have significantly reduced virus growth, a finding suggestive of an important role for the intact L domain in viral replication. Further structure-function analyses of both PICV and Lassa fever virus Z proteins suggest that arenavirus Z proteins have similar molecular mechanisms in mediating their multiple functions, with some interesting variations, such as the role of the G2 residue in blocking viral RNA synthesis. In summary, our studies have characterized the biological roles of the Z protein in an infectious arenavirus system and have shed important light on the distinct functions of its domains in virus budding and viral RNA regulation, the knowledge of which may lead to the development of novel antiviral drugs.

  9. Phase Diagram of KxFe2-ySe2-zSz and the Suppression of its Superconducting State by an Fe2-Se=S Tetrahedron Distortion

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lei H.; Abeykoon, M.; Bozin, E.S.

    2011-09-19

    We report structurally tuned superconductivity in a K{sub x}Fe{sub 2-y}Se{sub 2-z}S{sub z} (0 {le} z {le} 2) phase diagram. Superconducting T{sub c} is suppressed as S is incorporated into the lattice, eventually vanishing at 80% of S. The magnetic and conductivity properties can be related to stoichiometry on a poorly occupied Fe1 site and the local environment of a nearly fully occupied Fe2 site. The decreasing T{sub c} coincides with the increasing Fe1 occupancy and the overall increase in Fe stoichiometry from z = 0 to z = 2. Our results indicate that the irregularity of the Fe2-Se/S tetrahedron ismore » an important controlling parameter that can be used to tune the ground state in the new superconductor family.« less

  10. Phase Diagram of KxFe2-ySe2-zSz and the Suppression of its Superconducting State by an Fe2-Se/S Tetrahedron Distortion

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    H Lei; M Abeykoon; E Bozin

    2011-12-31

    We report structurally tuned superconductivity in a K{sub x}Fe{sub 2-y}Se{sub 2-z}S{sub z} (0 {le} z {le} 2) phase diagram. Superconducting T{sub c} is suppressed as S is incorporated into the lattice, eventually vanishing at 80% of S. The magnetic and conductivity properties can be related to stoichiometry on a poorly occupied Fe1 site and the local environment of a nearly fully occupied Fe2 site. The decreasing T{sub c} coincides with the increasing Fe1 occupancy and the overall increase in Fe stoichiometry from z = 0 to z = 2. Our results indicate that the irregularity of the Fe2-Se/S tetrahedron ismore » an important controlling parameter that can be used to tune the ground state in the new superconductor family.« less

  11. The radio relics and halo of El Gordo, a massive z = 0.870 cluster merger

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lindner, Robert R.; Baker, Andrew J.; Hughes, John P.

    We present 610 MHz and 2.1 GHz imaging of the massive Sunyaev-Zel'dovich Effect selected z = 0.870 cluster merger ACT-CL J0102–4915 ({sup E}l Gordo{sup )}, obtained with the Giant Metrewave Radio Telescope and the Australia Telescope Compact Array (ATCA), respectively. We detect two complexes of radio relics separated by 3.'4 (1.6 Mpc) along the system's northwest-to-southeast collision axis that have high integrated polarization fractions (33%) and steep spectral indices (α between 1 and 2; S {sub ν}∝ν{sup –α}), consistent with creation via Fermi acceleration by shocks in the intracluster medium triggered by the cluster collision. From the spectral index ofmore » the relics, we compute a Mach number M=2.5{sub −0.3}{sup +0.7} and shock speed of 2500{sub −300}{sup +400} km s{sup −1}. With our wide-bandwidth, full-polarization ATCA data, we compute the Faraday depth φ across the northwest relic and find a range of values spanning Δφ = 30 rad m{sup –2}, with a mean value of (φ) = 11 rad m{sup –2} and standard deviation σ{sub φ} = 6 rad m{sup –2}. With the integrated line-of-sight gas density derived from new Chandra X-ray observations, our Faraday depth measurement implies B {sub ∥} ∼ 0.01 μG in the cluster outskirts. The extremely narrow shock widths in the relics (d {sub shock} ≤ 23 kpc), caused by the short synchrotron cooling timescale of relativistic electrons at z = 0.870, prevent us from placing a meaningful constraint on the magnetic field strength B using cooling time arguments. In addition to the relics, we detect a large (r {sub H} ≅ 1.1 Mpc radius), powerful (log (L {sub 1.4}/W Hz{sup –1}) = 25.66 ± 0.12) radio halo with a shape similar to El Gordo's 'bullet'-like X-ray morphology. The spatially resolved spectral-index map of the halo shows the synchrotron spectrum is flattest near the relics, along the system's collision axis, and in regions of high T {sub gas}, all locations associated with recent energy

  12. FtsZ rings and helices: physical mechanisms for the dynamic alignment of biopolymers in rod-shaped bacteria.

    PubMed

    Fischer-Friedrich, Elisabeth; Friedrich, Benjamin M; Gov, Nir S

    2012-02-01

    In many bacterial species, the protein FtsZ forms a cytoskeletal ring that marks the future division site and scaffolds the division machinery. In rod-shaped bacteria, most frequently membrane-attached FtsZ rings or ring fragments are reported and occasionally helices. By contrast, axial FtsZ clusters have never been reported. In this paper, we investigate theoretically how dynamic FtsZ aggregates align in rod-shaped bacteria. We study systematically different physical mechanisms that affect the alignment of FtsZ polymers using a computational model that relies on autocatalytic aggregation of FtsZ filaments at the membrane. Our study identifies a general tool kit of physical and geometrical mechanisms by which rod-shaped cells align biopolymer aggregates. Our analysis compares the relative impact of each mechanism on the circumferential alignment of FtsZ as observed in rod-shaped bacteria. We determine spontaneous curvature of FtsZ polymers and axial confinement of FtsZ on the membrane as the strongest factors. Including Min oscillations in our model, we find that these stabilize axial and helical clusters on short time scales, but promote the formation of an FtsZ ring at the cell middle at longer times. This effect could provide an explanation to the long standing puzzle of transiently observed oscillating FtsZ helices in Escherichia coli cells prior to cell division.

  13. Tubulin homolog TubZ in a phage-encoded partition system

    PubMed Central

    Oliva, María A.; Martin-Galiano, Antonio J.; Sakaguchi, Yoshihiko; Andreu, José M.

    2012-01-01

    Partition systems are responsible for the process whereby large and essential plasmids are accurately positioned to daughter cells during bacterial division. They are typically made of three components: a centromere-like DNA zone, an adaptor protein, and an assembling protein that is either a Walker-box ATPase (type I) or an actin-like ATPase (type II). A recently described type III segregation system has a tubulin/FtsZ-like protein, called TubZ, for plasmid movement. Here, we present the 2.3 Å structure and dynamic assembly of a TubZ tubulin homolog from a bacteriophage and unravel the Clostridium botulinum phage c-st type III partition system. Using biochemical and biophysical approaches, we prove that a gene upstream from tubZ encodes the partner TubR and localize the centromeric region (tubS), both of which are essential for anchoring phage DNA to the motile TubZ filaments. Finally, we describe a conserved fourth component, TubY, which modulates the TubZ-R-S complex interaction. PMID:22538818

  14. Arterial spin labeling-based Z-maps have high specificity and positive predictive value for neurodegenerative dementia compared to FDG-PET.

    PubMed

    Fällmar, David; Haller, Sven; Lilja, Johan; Danfors, Torsten; Kilander, Lena; Tolboom, Nelleke; Egger, Karl; Kellner, Elias; Croon, Philip M; Verfaillie, Sander C J; van Berckel, Bart N M; Ossenkoppele, Rik; Barkhof, Frederik; Larsson, Elna-Marie

    2017-10-01

    Cerebral perfusion analysis based on arterial spin labeling (ASL) MRI has been proposed as an alternative to FDG-PET in patients with neurodegenerative disease. Z-maps show normal distribution values relating an image to a database of controls. They are routinely used for FDG-PET to demonstrate disease-specific patterns of hypometabolism at the individual level. This study aimed to compare the performance of Z-maps based on ASL to FDG-PET. Data were combined from two separate sites, each cohort consisting of patients with Alzheimer's disease (n = 18 + 7), frontotemporal dementia (n = 12 + 8) and controls (n = 9 + 29). Subjects underwent pseudocontinuous ASL and FDG-PET. Z-maps were created for each subject and modality. Four experienced physicians visually assessed the 166 Z-maps in random order, blinded to modality and diagnosis. Discrimination of patients versus controls using ASL-based Z-maps yielded high specificity (84%) and positive predictive value (80%), but significantly lower sensitivity compared to FDG-PET-based Z-maps (53% vs. 96%, p < 0.001). Among true-positive cases, correct diagnoses were made in 76% (ASL) and 84% (FDG-PET) (p = 0.168). ASL-based Z-maps can be used for visual assessment of neurodegenerative dementia with high specificity and positive predictive value, but with inferior sensitivity compared to FDG-PET. • ASL-based Z-maps yielded high specificity and positive predictive value in neurodegenerative dementia. • ASL-based Z-maps had significantly lower sensitivity compared to FDG-PET-based Z-maps. • FDG-PET might be reserved for ASL-negative cases where clinical suspicion persists. • Findings were similar at two study sites.

  15. Histone H2A.Z is essential for estrogen receptor signaling

    PubMed Central

    Gévry, Nicolas; Hardy, Sara; Jacques, Pierre-Étienne; Laflamme, Liette; Svotelis, Amy; Robert, François; Gaudreau, Luc

    2009-01-01

    Incorporation of H2A.Z into the chromatin of inactive promoters has been shown to poise genes for their expression. Here we provide strong evidence that H2A.Z is incorporated into the promoter regions of estrogen receptor (ERα) target genes only upon gene induction, and that, in a cyclic pattern. Moreover, members of the human H2A.Z-depositing complex, p400, also follow the same gene recruitment kinetics as H2A.Z. Importantly, cellular depletion of H2A.Z or p400 leads to a severe defect in estrogen signaling, including loss of estrogen-specific cell proliferation. We find that incorporation of H2A.Z within TFF1 promoter chromatin allows nucleosomes to adopt preferential positions along the DNA translational axis. Finally, we provide evidence that H2A.Z is essential to allow estrogen-responsive enhancer function. Taken together, our results provide strong mechanistic insight into how H2A.Z regulates ERα-mediated gene expression and provide a novel link between H2A.Z–p400 and ERα-dependent gene regulation and enhancer function. PMID:19515975

  16. The sarcomeric Z-disc component myopodin is a multiadapter protein that interacts with filamin and alpha-actinin.

    PubMed

    Linnemann, Anja; van der Ven, Peter F M; Vakeel, Padmanabhan; Albinus, Britta; Simonis, Dirk; Bendas, Gerd; Schenk, Jörg A; Micheel, Burkhard; Kley, Rudolf A; Fürst, Dieter O

    2010-09-01

    Here we introduce myopodin as a novel filamin C binding partner. Corroborative yeast two-hybrid and biochemical analyses indicate that the central part of myopodin that shows high homology to the closely related protein synaptopodin and that is common to all its currently known or predicted variants interacts with filamin C immunoglobulin-like domains 20-21. A detailed characterization of the previously described interaction between myopodin and alpha-actinin demonstrates for the first time that myopodin contains three independent alpha-actinin-binding sites. Newly developed myopodin-specific antibodies reveal expression at the earliest stages of in vitro differentiation of human skeletal muscle cells preceding the expression of sarcomeric alpha-actinin. Myopodin colocalizes with filamin and alpha-actinin during all stages of muscle development. By contrast, colocalization with its previously identified binding partner zyxin is restricted to early developmental stages. Genetic and cellular analyses of skeletal muscle provided direct evidence for an alternative transcriptional start site in exon three, corroborating the expression of a myopodin variant lacking the PDZ domain encoded by exons 1 and 2 in skeletal muscle. We conclude that myopodin is a multiadapter protein of the sarcomeric Z-disc that links nascent myofibrils to the sarcolemma via zyxin, and might play a role in early assembly and stabilization of the Z-disc. Mutations in FLNC, ACTN2 and several other genes encoding Z-disc-related proteins cause myopathy and cardiomyopathy. Its localization and its association with the myopathy-associated proteins filamin C and alpha-actinin make myopodin an interesting candidate for a muscle disease gene. Copyright 2010 Elsevier GmbH. All rights reserved.

  17. A single-chain variable fragment intrabody prevents intracellular polymerization of Z α1-antitrypsin while allowing its antiproteinase activity.

    PubMed

    Ordóñez, Adriana; Pérez, Juan; Tan, Lu; Dickens, Jennifer A; Motamedi-Shad, Neda; Irving, James A; Haq, Imran; Ekeowa, Ugo; Marciniak, Stefan J; Miranda, Elena; Lomas, David A

    2015-06-01

    Mutant Z α1-antitrypsin (E342K) accumulates as polymers within the endoplasmic reticulum (ER) of hepatocytes predisposing to liver disease, whereas low levels of circulating Z α1-antitrypsin lead to emphysema by loss of inhibition of neutrophil elastase. The ideal therapy should prevent polymer formation while preserving inhibitory activity. Here we used mAb technology to identify interactors with Z α1-antitrypsin that comply with both requirements. We report the generation of an mAb (4B12) that blocked α1-antitrypsin polymerization in vitro at a 1:1 molar ratio, causing a small increase of the stoichiometry of inhibition for neutrophil elastase. A single-chain variable fragment (scFv) intrabody was generated based on the sequence of mAb4B12. The expression of scFv4B12 within the ER (scFv4B12KDEL) and along the secretory pathway (scFv4B12) reduced the intracellular polymerization of Z α1-antitrypsin by 60%. The scFv4B12 intrabody also increased the secretion of Z α1-antitrypsin that retained inhibitory activity against neutrophil elastase. MAb4B12 recognized a discontinuous epitope probably located in the region of helices A/C/G/H/I and seems to act by altering protein dynamics rather than binding preferentially to the native state. This novel approach could reveal new target sites for small-molecule intervention that may block the transition to aberrant polymers without compromising the inhibitory activity of Z α1-antitrypsin. © FASEB.

  18. A Survey of z ~ 6 Quasars in the Sloan Digital Sky Survey Deep Stripe. I. A Flux-Limited Sample at zAB < 21

    NASA Astrophysics Data System (ADS)

    Jiang, Linhua; Fan, Xiaohui; Annis, James; Becker, Robert H.; White, Richard L.; Chiu, Kuenley; Lin, Huan; Lupton, Robert H.; Richards, Gordon T.; Strauss, Michael A.; Jester, Sebastian; Schneider, Donald P.

    2008-03-01

    We present the discovery of five quasars at z ~ 6 selected from 260 deg2 of the Sloan Digital Sky Survey (SDSS) southern survey, a deep imaging survey obtained by repeatedly scanning a stripe along the celestial equator. The five quasars with 20 < zAB < 21 are 1-2 magnitudes fainter than the luminous z ~ 6 quasars discovered in the SDSS main survey. One of them was independently discovered by the UKIRT Infrared Deep Sky Survey. These quasars, combined with another z ~ 6 quasar known in this region, make a complete flux-limited quasar sample at zAB < 21. The sample spans the redshift range 5.85 <= z <= 6.12 and the luminosity range -26.5 <= M 1450 <= -25.4 (H 0 = 70 km s-1 Mpc-1, Ω m = 0.3, and ΩΛ = 0.7). We use the 1/Va method to determine that the comoving quasar spatial density at langzrang = 6.0 and langM 1450rang = -25.8 is (5.0 ± 2.1) × 10-9 Mpc-3 mag-1. We model the bright-end quasar luminosity function (QLF) at z ~ 6 as a power law Φ(L 1450) vprop L β 1450. The slope β calculated from a combination of our sample and the luminous SDSS quasar sample is -3.1 ± 0.4, significantly steeper than the slope of the QLF at z ~ 4. Based on the derived QLF, we find that the quasar/active galactic nucleus (AGN) population cannot provide enough photons to ionize the intergalactic medium (IGM) at z ~ 6 unless the IGM is very homogeneous and the luminosity (L*1450) at which the QLF power law breaks is very low. Based on observations obtained with the Sloan Digital Sky Survey, which is owned and operated by the Astrophysical Research Consortium; the MMT Observatory, a joint facility of the University of Arizona and the Smithsonian Institution; the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile; the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California and the National Aeronautics and Space Administration, and was made possible by the generous financial

  19. Comparison of U.S. Geological Survey and Ohio Environmental Protection Agency fish-collection methods using the index of biotic integrity and modified index of well-being, 1996-97

    USGS Publications Warehouse

    Covert, S. Alex

    2001-01-01

    The U.S. Geological Survey (USGS) and Ohio Environmental Protection Agency (OEPA) collected data on fish from 10 stream sites in 1996 and 3 stream sites in 1997 as part of a comparative study of fish community assessment methods. The sites sampled represent a wide range of basin sizes (ranging from 132?6,330 square kilometers) and surrounding land-use types (urban, agricultural, and mixed). Each agency used its own fish-sampling protocol. Using the Index of Biotic Integrity and Modified Index of Well-Being, differences between data sets were tested for significance by means of the Wilcoxon signed-ranks test (a = 0.05). Results showed that the median of Index of Biotic Integrity differences between data sets was not significantly different from zero (p = 0.2521); however, the same statistical test showed the median differences in the Modified Index of Well-Being scores to be significantly different from zero (p = 0.0158). The differences observed in the Index of Biotic Integrity scores are likely due to natural variability, increased variability at sites with degraded water quality, differences in sampling methods, and low-end adjustments in the Index of Biotic Integrity calculation when fewer than 50 fish were collected. The Modified Index of Well-Being scores calculated by OEPA were significantly higher than those calculated by the USGS. This finding was attributed to the comparatively large numbers and biomass of fish collected by the OEPA. By combining the two indices and viewing them in terms of the percentage attainment of Ohio Warmwater Habitat criteria, the two agencies? data seemed comparable, although the Index of Biotic Integrity scores were more similar than the Modified Index of Well-Being scores.

  20. α Heating in a Stagnated Z-pinch

    NASA Astrophysics Data System (ADS)

    Appelbe, Brian; Chittenden, Jeremy

    2009-01-01

    A computational investigation of a scheme for magneto-inertial confinement fusion in a Z-pinch is carried out. In the scheme implosion of a deuterium-tritium fuel mass is preceded by formation of a hotspot containing warm, dense plasma on axis. The presence of the hotspot increases energy yield. Compression of the hotspot by the main fuel mass initiates thermonuclear burn. There is significant heating of the plasma by thermonuclear α particles which are confined by the strong magnetic field of the Z-pinch.

  1. Biodiversity Sampling Using a Global Acoustic Approach: Contrasting Sites with Microendemics in New Caledonia

    PubMed Central

    Gasc, Amandine; Sueur, Jérôme; Pavoine, Sandrine; Pellens, Roseli; Grandcolas, Philippe

    2013-01-01

    New Caledonia is a Pacific island with a unique biodiversity showing an extreme microendemism. Many species distributions observed on this island are extremely restricted, localized to mountains or rivers making biodiversity evaluation and conservation a difficult task. A rapid biodiversity assessment method based on acoustics was recently proposed. This method could help to document the unique spatial structure observed in New Caledonia. Here, this method was applied in an attempt to reveal differences among three mountain sites (Mandjélia, Koghis and Aoupinié) with similar ecological features and species richness level, but with high beta diversity according to different microendemic assemblages. In each site, several local acoustic communities were sampled with audio recorders. An automatic acoustic sampling was run on these three sites for a period of 82 successive days. Acoustic properties of animal communities were analysed without any species identification. A frequency spectral complexity index (NP) was used as an estimate of the level of acoustic activity and a frequency spectral dissimilarity index (Df) assessed acoustic differences between pairs of recordings. As expected, the index NP did not reveal significant differences in the acoustic activity level between the three sites. However, the acoustic variability estimated by the index Df, could first be explained by changes in the acoustic communities along the 24-hour cycle and second by acoustic dissimilarities between the three sites. The results support the hypothesis that global acoustic analyses can detect acoustic differences between sites with similar species richness and similar ecological context, but with different species assemblages. This study also demonstrates that global acoustic methods applied at broad spatial and temporal scales could help to assess local biodiversity in the challenging context of microendemism. The method could be deployed over large areas, and could help to compare

  2. Biodiversity sampling using a global acoustic approach: contrasting sites with microendemics in New Caledonia.

    PubMed

    Gasc, Amandine; Sueur, Jérôme; Pavoine, Sandrine; Pellens, Roseli; Grandcolas, Philippe

    2013-01-01

    New Caledonia is a Pacific island with a unique biodiversity showing an extreme microendemism. Many species distributions observed on this island are extremely restricted, localized to mountains or rivers making biodiversity evaluation and conservation a difficult task. A rapid biodiversity assessment method based on acoustics was recently proposed. This method could help to document the unique spatial structure observed in New Caledonia. Here, this method was applied in an attempt to reveal differences among three mountain sites (Mandjélia, Koghis and Aoupinié) with similar ecological features and species richness level, but with high beta diversity according to different microendemic assemblages. In each site, several local acoustic communities were sampled with audio recorders. An automatic acoustic sampling was run on these three sites for a period of 82 successive days. Acoustic properties of animal communities were analysed without any species identification. A frequency spectral complexity index (NP) was used as an estimate of the level of acoustic activity and a frequency spectral dissimilarity index (Df ) assessed acoustic differences between pairs of recordings. As expected, the index NP did not reveal significant differences in the acoustic activity level between the three sites. However, the acoustic variability estimated by the index Df , could first be explained by changes in the acoustic communities along the 24-hour cycle and second by acoustic dissimilarities between the three sites. The results support the hypothesis that global acoustic analyses can detect acoustic differences between sites with similar species richness and similar ecological context, but with different species assemblages. This study also demonstrates that global acoustic methods applied at broad spatial and temporal scales could help to assess local biodiversity in the challenging context of microendemism. The method could be deployed over large areas, and could help to

  3. A single-chain variable fragment intrabody prevents intracellular polymerization of Z α1-antitrypsin while allowing its antiproteinase activity

    PubMed Central

    Ordóñez, Adriana; Pérez, Juan; Tan, Lu; Dickens, Jennifer A.; Motamedi-Shad, Neda; Irving, James A.; Haq, Imran; Ekeowa, Ugo; Marciniak, Stefan J.; Miranda, Elena; Lomas, David A.

    2015-01-01

    Mutant Z α1-antitrypsin (E342K) accumulates as polymers within the endoplasmic reticulum (ER) of hepatocytes predisposing to liver disease, whereas low levels of circulating Z α1-antitrypsin lead to emphysema by loss of inhibition of neutrophil elastase. The ideal therapy should prevent polymer formation while preserving inhibitory activity. Here we used mAb technology to identify interactors with Z α1-antitrypsin that comply with both requirements. We report the generation of an mAb (4B12) that blocked α1-antitrypsin polymerization in vitro at a 1:1 molar ratio, causing a small increase of the stoichiometry of inhibition for neutrophil elastase. A single-chain variable fragment (scFv) intrabody was generated based on the sequence of mAb4B12. The expression of scFv4B12 within the ER (scFv4B12KDEL) and along the secretory pathway (scFv4B12) reduced the intracellular polymerization of Z α1-antitrypsin by 60%. The scFv4B12 intrabody also increased the secretion of Z α1-antitrypsin that retained inhibitory activity against neutrophil elastase. MAb4B12 recognized a discontinuous epitope probably located in the region of helices A/C/G/H/I and seems to act by altering protein dynamics rather than binding preferentially to the native state. This novel approach could reveal new target sites for small-molecule intervention that may block the transition to aberrant polymers without compromising the inhibitory activity of Z α1-antitrypsin.—Ordóñez, A., Pérez, J., Tan, L., Dickens, J. A., Motamedi-Shad, N., Irving, J. A., Haq, I., Ekeowa, U., Marciniak, S. J., Miranda, E., Lomas, D. A. A single-chain variable fragment intrabody prevents intracellular polymerization of Z α1-antitrypsin while allowing its antiproteinase activity. PMID:25757566

  4. Z-depth integration: a new technique for manipulating z-depth properties in composited scenes

    NASA Astrophysics Data System (ADS)

    Steckel, Kayla; Whittinghill, David

    2014-02-01

    This paper presents a new technique in the production pipeline of asset creation for virtual environments called Z-Depth Integration (ZeDI). ZeDI is intended to reduce the time required to place elements at the appropriate z-depth within a scene. Though ZeDI is intended for use primarily in two-dimensional scene composition, depth-dependent "flat" animated objects are often critical elements of augmented and virtual reality applications (AR/VR). ZeDI is derived from "deep image compositing", a capacity implemented within the OpenEXR file format. In order to trick the human eye into perceiving overlapping scene elements as being in front of or behind one another, the developer must manually manipulate which pixels of an element are visible in relation to other objects embedded within the environment's image sequence. ZeDI improves on this process by providing a means for interacting with procedurally extracted z-depth data from a virtual environment scene. By streamlining the process of defining objects' depth characteristics, it is expected that the time and energy required for developers to create compelling AR/VR scenes will be reduced. In the proof of concept presented in this manuscript, ZeDI is implemented for pre-rendered virtual scene construction via an AfterEffects software plug-in.

  5. A magnetic topological semimetal Sr 1-yMn 1-zSb2 (y, z < 0.10)

    DOE PAGES

    Liu, J. Y.; Hu, J.; Zhang, Qiang; ...

    2017-07-24

    Weyl (WSMs) evolve from Dirac semimetals in the presence of broken time-reversal symmetry (TRS) or space-inversion symmetry. The WSM phases in TaAs-class materials and photonic crystals are due to the loss of space-inversion symmetry. For TRS-breaking WSMs, despite numerous theoretical and experimental efforts, few examples have been reported. Here in this paper, we report a new type of magnetic semimetal Sr 1-yMn 1-zSb 2 (y, z < 0.1) with nearly massless relativistic fermion behaviour (m* = 0.04 - 0.05m 0, where m 0 is the free-electron mass). This material exhibits a ferromagnetic order for 304 K < T < 565more » K, but a canted antiferromagnetic order with a ferromagnetic component for T < 304 K. The combination of relativistic fermion behaviour and ferromagnetism in Sr 1-yMn 1-zSb2 offers a rare opportunity to investigate the interplay between relativistic fermions and spontaneous TRS breaking.« less

  6. A magnetic topological semimetal Sr 1-yMn 1-zSb2 (y, z < 0.10)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Liu, J. Y.; Hu, J.; Zhang, Qiang

    Weyl (WSMs) evolve from Dirac semimetals in the presence of broken time-reversal symmetry (TRS) or space-inversion symmetry. The WSM phases in TaAs-class materials and photonic crystals are due to the loss of space-inversion symmetry. For TRS-breaking WSMs, despite numerous theoretical and experimental efforts, few examples have been reported. Here in this paper, we report a new type of magnetic semimetal Sr 1-yMn 1-zSb 2 (y, z < 0.1) with nearly massless relativistic fermion behaviour (m* = 0.04 - 0.05m 0, where m 0 is the free-electron mass). This material exhibits a ferromagnetic order for 304 K < T < 565more » K, but a canted antiferromagnetic order with a ferromagnetic component for T < 304 K. The combination of relativistic fermion behaviour and ferromagnetism in Sr 1-yMn 1-zSb2 offers a rare opportunity to investigate the interplay between relativistic fermions and spontaneous TRS breaking.« less

  7. Advancing Astronomical Instrumentation: an Adaptive Optics Kinematic Study of z 1 Star-Forming Galaxies

    NASA Astrophysics Data System (ADS)

    Mieda, Etsuko

    This thesis has a dual focus on improving ground-based astronomical instruments and an observational study of distant star-forming galaxies to study galaxy formation and evolution. Of fundamental importance to this work are adaptive optics (AO) technology and integral field spectrographs (IFSs), both of which offer powerful means of studying high redshift galaxies. First, I describe the design and development of an instrument to characterize the vertical atmospheric turbulence using the SLODAR (SLOpe Detection and Ranging) method. This instrument was used in a campaign at Ellesmere island ( 80 degN) nd determined that the site has half of the total turbulence residing in the ground layer (< 1 km), and that the median seeing at Ellesmere is comparable to the best worldwide observing sites. Secondly, I present the design and implementation of an experimental setup to evaluate a new grating designed for OSIRIS (OH-Suppressing Infra-Red Imaging Spectrograph), an IFS at the Keck I telescope. I tested and installed a new grating in OSIRIS, and the improved sensitivity with the new grating is a factor of 1.83 between 1-2.4 um. Finally, taking direct advantage of the improved OSIRIS performance, I built-up the currently largest sample of z 1 star-forming galaxies taken with an IFS coupled with AO. I present the first results of IROCKS (Intermediate Redshift OSIRIS Chemo-Kinematic Survey), a spatially resolved Halpha survey containing sixteen z 1 and one z 1.5 star-forming galaxies. The Halpha kinematics and morphologies of these galaxies were investigated, including resolved star-forming clumps. These IROCKS results show that z 1 star-forming galaxies have elevated line-of-sight velocity dispersions (sigma_ave 60 km/s) compared to local galaxies yet have lower dispersions compared to their counterparts at higher redshift (z > 1.5). Four of the z 1 galaxies are well-fit to an inclined disk model, and the disk fraction is similar to high-z samples. The size

  8. Feasibility of observing the α decay chains from isotopes of SHN with Z = 128, Z = 126, Z = 124 and Z = 122

    NASA Astrophysics Data System (ADS)

    Santhosh, K. P.; Priyanka, B.; Nithya, C.

    2016-11-01

    Within the Coulomb and proximity potential model for deformed nuclei (CPPMDN), the alpha decay properties of 34 isotopes of the superheavy nuclei with Z = 128 within the range 306 ≤ A ≤ 339 have been studied, considering both the parent and daughter nuclei to be deformed. The manuscript also deals with the decay properties of the isotopes of Z = 126 (within 288 ≤ A ≤ 339), Z = 124 (within 284 ≤ A ≤ 339) and Z = 122 (within 280 ≤ A ≤ 339). The alpha decay half lives thus evaluated have been compared with the values evaluated using other theoretical models and it was seen that, our theoretical alpha decay half lives match well with these values. Through the present study, we have underlined and have established the fact that, among the 192 isotopes considered in the present study, only those isotopes 321-324,328-335128, 318-320,323-327126, 305-308,315-322124 and 298-307,311-314122 can be synthesised and detected through alpha decay in laboratory. As the alpha decay half lives of these superheavy isotopes lie within the experimental limits, we hope these predictions, on the decay modes of these unknown nuclei, to pave the way for the future experiments. The proton separation energy calculations on 306-339128, 288-336126, 284-339124 and 280-339122 superheavy nuclei have also been done and the study revealed the probable proton emitters among these nuclei.

  9. 30 CFR 250.1200 - Question index table.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false Question index table. 250.1200 Section 250.1200... Security § 250.1200 Question index table. The table in this section lists questions concerning Oil and Gas... requirements for a periodic well test used for allocation? § 250.1204(b) 21. What are the requirements for site...

  10. THE STRUCTURE OF MASSIVE QUIESCENT GALAXIES AT Z {approx} 3 IN THE CANDELS-COSMOS FIELD

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Fan Lulu; Chen Yang; Pan Zhizheng

    2013-07-10

    In this Letter, we use a two-color (J - L) versus (V - J) selection criterion to search massive quiescent galaxy (QG) candidates at 2.5 {<=} z {<=} 4.0 in the CANDELS-COSMOS field. We construct an H{sub F160W}-selected catalog and complement it with public auxiliary data. We finally obtain 19 passive VJL-selected (hereafter pVJL) galaxies as the possible massive QG candidates at z {approx} 3 by several constrains. We find the sizes of our pVJL galaxies are on average three to four times smaller than those of local early-type galaxies (ETGs) with analogous stellar mass. The compact size of thesemore » z {approx} 3 galaxies can be modeled by assuming their formation at z{sub form} {approx} 4-6 according to the dissipative collapse of baryons. Up to z < 4, the mass-normalized size evolution can be described by r{sub e} {proportional_to}(1 + z){sup -1.0}. Low Sersic index and axis ratio, with median values n {approx}1.5 and b/a {approx} 0.65, respectively, indicate that most of the pVJL galaxies are disk-dominated. Despite large uncertainty, the inner region of the median mass profile of our pVJL galaxies is similar to those of QGs at 0.5 < z < 2.5 and local ETGs. It indicates that local massive ETGs have been formed according to an inside-out scenario: the compact galaxies at high redshift make up the cores of local massive ETGs and then build up the outskirts according to dissipationless minor mergers.« less

  11. Application of a karst disturbance index in Hillsborough County, Florida.

    PubMed

    van Beynen, Philip; Feliciano, Nilda; North, Leslie; Townsend, Kaya

    2007-02-01

    Hillsborough County, Florida, is a karst region that is heavily urbanized, yet no study has been undertaken measuring the degree of human disturbance. Van Beynen and Townsend (2005) created a hierarchical and standardized disturbance index specifically designed for karst environments. To address the problem of determining human disturbance in the county, the above index was successfully applied and it was found that Hillsborough was highly disturbed (disturbance score of 0.69 of 1.0) because of its predominant urban and rural land use. Furthermore, the application of the index allowed for its refinement and the highlighting of environmental aspects in need of remediation such as soil compaction, deforestation, disturbance of archaeological sites, and the expanding urban footprint. Several minor issues arose during the application: the need for broader indicator descriptions that encompass a variety of scenarios, the need for a revised water quality indicator, inadequate data on sinkholes, and a lack of data for species richness and species population density. The utility of the index to resource managers arises from emphasizing certain areas of the environment that require immediate attention and determining temporal changes in environmental quality. Future application of the index requires potential retooling of the biota indicators, tightening of scoring descriptions for certain indicators, and further examination of the scale at which the index can be applied.

  12. 5 CFR 2604.202 - Index identifying information for the public.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 5 Administrative Personnel 3 2010-01-01 2010-01-01 false Index identifying information for the... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.202 Index identifying information for the public. (a) The Office of Government Ethics will...

  13. ALHAMBRA-survey: a new tool for photo-z calibrations in absence of spec-z information

    NASA Astrophysics Data System (ADS)

    Molino Benito, A.; Benitez Lozano, N.; The Alhambra-Team

    2013-05-01

    La estimación de los desplazamientos al rojo (redshift) de las galaxias, derivados mediante fotometría multi-banda, se conoce con el nombre de photometric redshifts (photo-z). Es bien sabido que la precisión alcanzable por estas técnicas puede verse incrementada si se dispone de una muestra espectroscópica de galaxias (cuyos redshifts (spec-z) sean conocidos) con la que re-calibrar los puntos cero fotométricos. (Coe et al. 2006, Ilbert et al. 2008, Molino et al. 2012 in prep). ALHAMBRA-survey, que es un cartografiado extragaláctico (de ˜4 grados cuadrados) dedicado a la realización de un estudio de la evolución de las propiedades y contenido del Universo (Moles et al. 2005, 2008), presenta solapamientos parciales con otros cartografiados espectroscópicos ya existentes con el objetivo de validar y mejorar la precisión de sus photo-z. Sin embargo, dada la variabilidad fotométrica entre sus campos, resulta ineficiente extrapolar las correcciones de punto cero, introduciendo sesgos de inhomogeneidad en la precisión de los resultados. En este trabajo se presenta una nueva metodología que permite mejorar la calibración de los puntos cero fotométricos mediante la utilización de la información estadística proporcionada por los propios photo-z. Mediante esta técnica resulta posible no sólo mejorar la precisión de las estimaciones sino, además, soslayar la necesidad de obtener grandes muestras espectroscópicas.

  14. 2010 NCCA oligochaete trophic index results to inform benthic ...

    EPA Pesticide Factsheets

    Over 400 sites were sampled in the nearshore of the U.S. Great Lakes during the National Coastal Condition Assessment (NCCA) field survey in summer 2010. To assess benthic ecological condition, 393 PONARs were attempted, and collected macroinvertebrates were identified and enumerated. Biological condition at each site was classified as good, fair or poor using the Oligochaete Trophic Index (OTI). The Great Lakes coasts were then classified by calculating percent area within a condition class: good (20.3%), fair (11.6%), and poor (18.0%). Due to unsuccessful PONARs, unclassified oligochaetes or no oligochaetes captured, 50.1% of the sampled area was classified as missing. In order to help focus future discussion and development of a Great Lakes benthic index, OTI results were compared to other traditional biotic integrity indices. In addition, unclassified sites were examined to determine possible methods or metrics that could prevent missing data in a newly developed index. not applicable

  15. Ki67 Proliferation Index as a Tool for Chemotherapy Decisions During and After Neoadjuvant Aromatase Inhibitor Treatment of Breast Cancer: Results From the American College of Surgeons Oncology Group Z1031 Trial (Alliance).

    PubMed

    Ellis, Matthew J; Suman, Vera J; Hoog, Jeremy; Goncalves, Rodrigo; Sanati, Souzan; Creighton, Chad J; DeSchryver, Katherine; Crouch, Erika; Brink, Amy; Watson, Mark; Luo, Jingqin; Tao, Yu; Barnes, Michael; Dowsett, Mitchell; Budd, G Thomas; Winer, Eric; Silverman, Paula; Esserman, Laura; Carey, Lisa; Ma, Cynthia X; Unzeitig, Gary; Pluard, Timothy; Whitworth, Pat; Babiera, Gildy; Guenther, J Michael; Dayao, Zoneddy; Ota, David; Leitch, Marilyn; Olson, John A; Allred, D Craig; Hunt, Kelly

    2017-04-01

    Purpose To determine the pathologic complete response (pCR) rate in estrogen receptor (ER) -positive primary breast cancer triaged to chemotherapy when the protein encoded by the MKI67 gene (Ki67) level was > 10% after 2 to 4 weeks of neoadjuvant aromatase inhibitor (AI) therapy. A second objective was to examine risk of relapse using the Ki67-based Preoperative Endocrine Prognostic Index (PEPI). Methods The American College of Surgeons Oncology Group (ACOSOG) Z1031A trial enrolled postmenopausal women with stage II or III ER-positive (Allred score, 6 to 8) breast cancer whose treatment was randomly assigned to neoadjuvant AI therapy with anastrozole, exemestane, or letrozole. For the trial ACOSOG Z1031B, the protocol was amended to include a tumor Ki67 determination after 2 to 4 weeks of AI. If the Ki67 was > 10%, patients were switched to neoadjuvant chemotherapy. A pCR rate of > 20% was the predefined efficacy threshold. In patients who completed neoadjuvant AI, stratified Cox modeling was used to assess whether time to recurrence differed by PEPI = 0 score (T1 or T2, N0, Ki67 < 2.7%, ER Allred > 2) versus PEPI > 0 disease. Results Only two of the 35 patients in ACOSOG Z1031B who were switched to neoadjuvant chemotherapy experienced a pCR (5.7%; 95% CI, 0.7% to 19.1%). After 5.5 years of median follow-up, four (3.7%) of the 109 patients with a PEPI = 0 score relapsed versus 49 (14.4%) of 341 of patients with PEPI > 0 (recurrence hazard ratio [PEPI = 0 v PEPI > 0], 0.27; P = .014; 95% CI, 0.092 to 0.764). Conclusion Chemotherapy efficacy was lower than expected in ER-positive tumors exhibiting AI-resistant proliferation. The optimal therapy for these patients should be further investigated. For patients with PEPI = 0 disease, the relapse risk over 5 years was only 3.6% without chemotherapy, supporting the study of adjuvant endocrine monotherapy in this group. These Ki67 and PEPI triage approaches are being definitively studied in the ALTERNATE trial (Alternate

  16. L2₁ and XA Ordering Competition in Hafnium-Based Full-Heusler Alloys Hf₂VZ (Z = Al, Ga, In, Tl, Si, Ge, Sn, Pb).

    PubMed

    Wang, Xiaotian; Cheng, Zhenxiang; Wang, Wenhong

    2017-10-20

    For theoretical designing of full-Heusler based spintroinc materials, people have long believed in the so-called Site Preference Rule (SPR). Very recently, according to the SPR, there are several studies on XA-type Hafnium-based Heusler alloys X₂YZ, i.e., Hf₂VAl, Hf₂CoZ (Z = Ga, In) and Hf₂CrZ (Z = Al, Ga, In). In this work, a series of Hf₂-based Heusler alloys, Hf₂VZ (Z = Al, Ga, In, Tl, Si, Ge, Sn, Pb), were selected as targets to study the site preferences of their atoms by first-principle calculations. It has been found that all of them are likely to exhibit the L2₁-type structure instead of the XA one. Furthermore, we reveal that the high values of spin-polarization of XA-type Hf₂VZ (Z = Al, Ga, In, Tl, Si, Ge, Sn, Pb) alloys have dropped dramatically when they form the L2₁-type structure. Also, we prove that the electronic, magnetic, and physics nature of these alloys are quite different, depending on the L2₁-type or XA-type structures.

  17. Modeling FtsZ ring formation in the bacterial cell-anisotropic aggregation via mutual interactions of polymer rods.

    PubMed

    Fischer-Friedrich, Elisabeth; Gov, Nir

    2011-04-01

    The cytoskeletal protein FtsZ polymerizes to a ring structure (Z ring) at the inner cytoplasmic membrane that marks the future division site and scaffolds the division machinery in many bacterial species. FtsZ is known to polymerize in the presence of GTP into single-stranded protofilaments. In vivo, FtsZ polymers become associated with the cytoplasmic membrane via interaction with the membrane-binding proteins FtsA and ZipA. The FtsZ ring structure is highly dynamic and undergoes constantly polymerization and depolymerization processes and exchange with the cytoplasmic pool. In this theoretical study, we consider a scenario of Z ring self-organization via self-enhanced attachment of FtsZ polymers due to end-to-end interactions and lateral interactions of FtsZ polymers on the membrane. With the assumption of exclusively circumferential polymer orientations, we derive coarse-grained equations for the dynamics of the pool of cytoplasmic and membrane-bound FtsZ. To capture stochastic effects expected in the system due to low particle numbers, we simulate our computational model using a Gillespie-type algorithm. We obtain ring- and arc-shaped aggregations of FtsZ polymers on the membrane as a function of monomer numbers in the cell. In particular, our model predicts the number of FtsZ rings forming in the cell as a function of cell geometry and FtsZ concentration. We also calculate the time of FtsZ ring localization to the midplane in the presence of Min oscillations. Finally, we demonstrate that the assumptions and results of our model are confirmed by 3D reconstructions of fluorescently-labeled FtsZ structures in E. coli that we obtained.

  18. Mapping flexibility and the assembly switch of cell division protein FtsZ by computational and mutational approaches.

    PubMed

    Martín-Galiano, Antonio J; Buey, Rubén M; Cabezas, Marta; Andreu, José M

    2010-07-16

    The molecular switch for nucleotide-regulated assembly and disassembly of the main prokaryotic cell division protein FtsZ is unknown despite the numerous crystal structures that are available. We have characterized the functional motions in FtsZ with a computational consensus of essential dynamics, structural comparisons, sequence conservation, and networks of co-evolving residues. Employing this information, we have constructed 17 mutants, which alter the FtsZ functional cycle at different stages, to modify FtsZ flexibility. The mutant phenotypes ranged from benign to total inactivation and included increased GTPase, reduced assembly, and stabilized assembly. Six mutations clustering at the long cleft between the C-terminal beta-sheet and core helix H7 deviated FtsZ assembly into curved filaments with inhibited GTPase, which still polymerize cooperatively. These mutations may perturb the predicted closure of the C-terminal domain onto H7 required for switching between curved and straight association modes and for GTPase activation. By mapping the FtsZ assembly switch, this work also gives insight into FtsZ druggability because the curved mutations delineate the putative binding site of the promising antibacterial FtsZ inhibitor PC190723.

  19. VTVH-MCD study of the Delta nifB Delta nifZ MoFe protein from Azotobacter vinelandii.

    PubMed

    Cotton, Marcia S; Rupnik, Kresimir; Broach, Robyn B; Hu, Yilin; Fay, Aaron W; Ribbe, Markus W; Hales, Brian J

    2009-04-08

    NifZ is a member of a series of proteins associated with the maturation of the nitrogenase MoFe protein. An MCD spectroscopic study was undertaken on the Delta nifB Delta nifZ MoFe protein generated in the absence of both NifZ and NifB (deletion of NifB generates an apo-MoFe protein lacking the FeMo cofactor). Results presented here show that, in the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, representing a P-cluster precursor that is electronically identical to the analogous clusters observed in the Delta nifH MoFe protein. These results suggest that the MoFe protein is synthesized in a stepwise fashion where NifZ is specifically required for the formation of the second P-cluster.

  20. Structural insights of Staphylococcus aureus FtsZ inhibitors through molecular docking, 3D-QSAR and molecular dynamics simulations.

    PubMed

    Ballu, Srilata; Itteboina, Ramesh; Sivan, Sree Kanth; Manga, Vijjulatha

    2018-02-01

    Filamentous temperature-sensitive protein Z (FtsZ) is a protein encoded by the FtsZ gene that assembles into a Z-ring at the future site of the septum of bacterial cell division. Structurally, FtsZ is a homolog of eukaryotic tubulin but has low sequence similarity; this makes it possible to obtain FtsZ inhibitors without affecting the eukaryotic cell division. Computational studies were performed on a series of substituted 3-arylalkoxybenzamide derivatives reported as inhibitors of FtsZ activity in Staphylococcus aureus. Quantitative structure-activity relationship models (QSAR) models generated showed good statistical reliability, which is evident from r 2 ncv and r 2 loo values. The predictive ability of these models was determined and an acceptable predictive correlation (r 2 Pred ) values were obtained. Finally, we performed molecular dynamics simulations in order to examine the stability of protein-ligand interactions. This facilitated us to compare free binding energies of cocrystal ligand and newly designed molecule B1. The good concordance between the docking results and comparative molecular field analysis (CoMFA)/comparative molecular similarity indices analysis (CoMSIA) contour maps afforded obliging clues for the rational modification of molecules to design more potent FtsZ inhibitors.

  1. A GIS-derived integrated moisture index to predict forest composition and productivity of Ohio forests (U.S.A.)

    Treesearch

    Louis R. Iverson; Martin E. Dale; Charles T. Scott; Anantha Prasad; Anantha Prasad

    1997-01-01

    A geographic information system (GIS) approach was used in conjunction with forest-plot data to develop an integrated moisture index (IMI), which was then used to predict forest productivity (site index) and species composition for forests in Ohio. In this region, typical of eastern hardwoods across the Midwest and southern Appalachians, topographic aspect and position...

  2. Galaxies at z~7-8: z850-Dropouts in the Hubble Ultra Deep Field

    NASA Astrophysics Data System (ADS)

    Bouwens, R. J.; Thompson, R. I.; Illingworth, G. D.; Franx, M.; van Dokkum, P. G.; Fan, X.; Dickinson, M. E.; Eisenstein, D. J.; Rieke, M. J.

    2004-12-01

    We have detected likely z~7-8 galaxies in the 144''×144'' Near-Infrared Camera and Multi-Object Spectrometer (NICMOS) observations of the Hubble Ultra Deep Field. Objects are required to be >=3 σ detections in both NICMOS bands, J110 and H160. The selection criteria for this sample are (z850-J110)AB>0.8, (z850-J110)AB>0.66(J110-H160)AB+0.8, (J110-H160)AB<1.2 and no detection at less than 8500 Å. The five selected sources have total magnitudes H160,AB~27. Four of the five sources are quite blue compared to typical lower redshift dropout galaxies and are clustered within a 1 arcmin2 region. Because all five sources are near the limit of the NICMOS data, we have carefully evaluated their reality. Each of the candidates is visible in different splits of the data and a median stack. We analyzed several noise images and estimate the number of spurious sources to be 1+/-1. A search using an independent reduction of this same data set clearly revealed three of the five candidates and weakly detected a fourth candidate, suggesting that the contamination could be higher. For comparison with predictions from lower redshift samples, we take a conservative approach and adopt four z~7-8 galaxies as our sample. With the same detection criteria on simulated data sets, assuming no evolution from z~3.8, we predict 10 sources at z~7-8, or 14 if we use a more realistic (1+z)-1 size scaling. We estimate that the rest-frame continuum UV (~1800 Å) luminosity density at z~7.5 (integrated down to 0.3L*z=3) is just 0.20+0.12-0.08 times that found at z~3.8 (or 0.20+0.23-0.12 times this quantity including cosmic variance). Effectively this sets an upper limit on the luminosity density down to 0.3L*z=3 and is consistent with significant evolution at the bright end of the luminosity function from z~7.5 to 3.8. Even with the lower UV luminosity density at z~7.5, it appears that galaxies could still play an important role in reionization at these redshifts, although definitive measurements

  3. Msx1 is expressed in retina endothelial cells at artery branching sites.

    PubMed

    Lopes, Miguel; Goupille, Olivier; Saint Cloment, Cécile; Robert, Benoît

    2012-04-15

    Msx1 and Msx2 encode homeodomain transcription factors that play a role in several embryonic developmental processes. Previously, we have shown that in the adult mouse, Msx1(lacZ) is expressed in vascular smooth muscle cells (VSMCs) and pericytes, and that Msx2(lacZ) is also expressed in VSMCs as well as in a few endothelial cells (ECs). The mouse retina and choroid are two highly vascularized tissues. Vessel alterations in the retina are associated with several human diseases and the retina has been intensely used for angiogenesis studies, whereas the choroid has been much less investigated. Using the Msx1(lacZ) and Msx2(lacZ) reporter alleles, we observed that Msx2 is not expressed in the eye vascular tree in contrast to Msx1, for which we establish the spatial and temporal expression pattern in these tissues. In the retina, expression of Msx1 takes place from P3, and by P10, it becomes confined to a subpopulation of ECs at branching points of superficial arterioles. These branching sites are characterized by a subpopulation of mural cells that also show specific expression programs. Specific Msx gene inactivation in the endothelium, using Msx1 and Msx2 conditional mutant alleles together with a Tie2-Cre transgene, did not lead to conspicuous structural defects in the retinal vascular network. Expression of Msx1 at branching sites might therefore be linked to vessel physiology. The retinal blood flow is autonomously regulated and perfusion of capillaries has been proposed to depend on arteriolar precapillary structures that might be the sites for Msx1 expression. On the other hand, branching sites are subject to shear stress that might induce Msx1 expression. In the choroid vascular layer Msx1(lacZ) is expressed more broadly and dynamically. At birth Msx1(lacZ) expression takes place in the endothelium but at P21 its expression has shifted towards the mural layer. We discuss the possible functions of Msx1 in the eye vasculature.

  4. Msx1 is expressed in retina endothelial cells at artery branching sites

    PubMed Central

    Lopes, Miguel; Goupille, Olivier; Saint Cloment, Cécile; Robert, Benoît

    2012-01-01

    Summary Msx1 and Msx2 encode homeodomain transcription factors that play a role in several embryonic developmental processes. Previously, we have shown that in the adult mouse, Msx1lacZ is expressed in vascular smooth muscle cells (VSMCs) and pericytes, and that Msx2lacZ is also expressed in VSMCs as well as in a few endothelial cells (ECs). The mouse retina and choroid are two highly vascularized tissues. Vessel alterations in the retina are associated with several human diseases and the retina has been intensely used for angiogenesis studies, whereas the choroid has been much less investigated. Using the Msx1lacZ and Msx2lacZ reporter alleles, we observed that Msx2 is not expressed in the eye vascular tree in contrast to Msx1, for which we establish the spatial and temporal expression pattern in these tissues. In the retina, expression of Msx1 takes place from P3, and by P10, it becomes confined to a subpopulation of ECs at branching points of superficial arterioles. These branching sites are characterized by a subpopulation of mural cells that also show specific expression programs. Specific Msx gene inactivation in the endothelium, using Msx1 and Msx2 conditional mutant alleles together with a Tie2-Cre transgene, did not lead to conspicuous structural defects in the retinal vascular network. Expression of Msx1 at branching sites might therefore be linked to vessel physiology. The retinal blood flow is autonomously regulated and perfusion of capillaries has been proposed to depend on arteriolar precapillary structures that might be the sites for Msx1 expression. On the other hand, branching sites are subject to shear stress that might induce Msx1 expression. In the choroid vascular layer Msx1lacZ is expressed more broadly and dynamically. At birth Msx1lacZ expression takes place in the endothelium but at P21 its expression has shifted towards the mural layer. We discuss the possible functions of Msx1 in the eye vasculature. PMID:23213427

  5. Hot Isostatic Pressing of Engineered Forms of I-AgZ

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Jubin, Robert Thomas; Watkins, Thomas R.; Bruffey, Stephanie H.

    Hot isostatic pressing (HIP) is being considered for direct conversion of 129I-bearing materials to a radiological waste form. The removal of volatile radioactive 129I from the off-gas of a nuclear fuel reprocessing facility will be necessary to comply with regulatory requirements regarding reprocessing facilities sited within the United States, and any iodine-containing media or solid sorbents generated by offgas abatement will require disposal. Zeolite minerals such as silver-exchanged mordenite (AgZ) have been studied as potential iodine sorbents and will contain 129I as chemisorbed AgI. Oak Ridge National Laboratory (ORNL) has conducted several recent studies on the HIP of both iodine-loadedmore » AgZ (I-AgZ) and other iodine-bearing zeolite minerals. The goal of these research efforts is to achieve a stable, highly leach resistant material that is reduced in volume as compared to bulk iodine-loaded I-AgZ. Through the use of HIP, it may be possible to achieve this with the addition of little or no additional materials (waste formers). Other goals for the process include that the waste form will be tolerant to high temperatures and pressures, not chemically hazardous, and that the process will result in minimal secondary waste generation. This document describes the preparation of 27 samples that are distinct from previous efforts in that they are prepared exclusively with an engineered form of AgZ that is manufactured using a binder. Iodine was incorporated solely by chemisorption. This base material is expected to be more representative of an operational system than were samples prepared previously with pure minerals.« less

  6. Z-scan and optical limiting properties of Hibiscus Sabdariffa dye

    NASA Astrophysics Data System (ADS)

    Diallo, A.; Zongo, S.; Mthunzi, P.; Rehman, S.; Alqaradawi, S. Y.; Soboyejo, W.; Maaza, M.

    2014-12-01

    The intensity-dependent refractive index n 2 and the nonlinear susceptibility χ (3) of Hibiscus Sabdariffa dye solutions in the nanosecond regime at 532 nm are reported. More presicely, the variation of n 2, β, and real and imaginary parts of χ (3) versus the natural dye extract concentration has been carried out by z-scan and optical limiting techniques. The third-order nonlinearity of the Hibiscus Sabdariffa dye solutions was found to be dominated by nonlinear refraction, which leads to strong optical limiting of laser.

  7. Quenching of giant hysteresis effects in La(1-z)Y(z)Hx switchable mirrors

    PubMed

    van Gogh AT; Nagengast; Kooij; Koeman; Griessen

    2000-09-04

    The giant intrinsic hysteresis as a function of hydrogen concentration x in the optical and electrical properties of the archetypal switchable mirror YHx is eliminated by alloying Y with the chemically similar La. The La(1-z)Y(z)Hx films with zz>/=0.86 is the large uniaxial lattice expansion that accompanies their fcc to hexagonal phase transition in combination with lateral clamping.

  8. A Possible Indicator of Oxidative Damage in Smokers: (13Z)-Lycopene?

    PubMed

    Graham, Daniel L; Lorenz, Mario; Young, Andrew J; Lowe, Gordon M

    2017-09-13

    In vitro, the gaseous phase of cigarette smoke is known to induce both isomerization and degradation of dietary carotenoids, such as β-carotene and lycopene. However, the effects of cigarette smoke on the composition of circulating lycopene in vivo are not well understood. In this study, we examined the lycopene profiles of plasma from non-smokers and smokers. No oxidative intermediates of lycopene that have been observed previously in vitro were detected in the plasma, but evidence of isomerization of the carotenoid was seen. Four geometric forms of lycopene were detected in the plasma of both smokers and non-smokers, namely the (5 Z ), (9 Z ), (13 Z ) and (all- E ) forms. The relative amounts of these isomers differed between the two cohorts and there was a significant difference ( p < 0.05) between smokers and non-smokers for the ratio of total-Z:all- E lycopene, and in the relative amounts of (13 Z ) and (all- E )-lycopene. The ratio of (all- E ):(13 Z )-lycopene was 0.84:1.00 in smokers compared to 1.04:1.00 in non-smokers. In smokers, the (13 Z )-isomer was generated in preference to the more thermodynamically stable (5 Z ) and (9 Z )-isomers. This mirrors the scenario seen in vitro, in which the formation of (13 Z )-lycopene was the main isomer that accompanied the depletion of (all- E ) lycopene, when exposed to cigarette smoke. The results suggest that the relative amount of (13 Z )-lycopene could be used as an indicator of oxidative damage to lycopene in vivo.

  9. Higher mortality in areas of lower socioeconomic position measured by a single index of deprivation in Japan.

    PubMed

    Fukuda, Yoshiharu; Nakamura, Keiko; Takano, Takehito

    2007-03-01

    To formulate an index representing area deprivation and elucidate the relation between the index and mortality in Japan. Ecological study for prefectures (N=47) and municipalities (N=3366) across Japan. Based on socioeconomic indicators of seven domains of deprivation (i.e. unemployment, overcrowding, low social class and poverty, low education, no home ownership, low income and vulnerable group), an index was formulated using the z-scoring method. The relation between the index and mortality was examined by correlation analysis, hierarchical Poisson regression and comparison of standardized mortality ratio according to the index. The deprivation index ranged from -7.48 to 10.98 for prefectures and from -16.97 to 13.82 for municipalities. The index was significantly positively correlated with prefectural mortality, especially in the population aged under 74 years: r=0.65 for men and r=0.41 for women. At the municipal level, hierarchical Poisson regression showed a significant positive coefficient of the index to mortality for both men and women, and excess mortality in the most deprived fifth compared to the least deprived fifth was 26.4% in men and 11.8% in women. We formulated a deprivation index, which was substantially related to mortality at the prefectural and municipal levels. This study highlights the higher risk of dying among populations in socially disadvantaged areas and encourages the use of indices representing area socioeconomic conditions for further studies of area effects on health.

  10. Relations between the Sizes of Galaxies and Their Dark Matter Halos at Redshifts 0 < z < 3

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Huang, Kuang-Han; Fall, S. Michael; Ferguson, Henry C.

    2017-03-20

    We derive relations between the effective radii R {sub eff} of galaxies and the virial radii R {sub 200} {sub c} of their dark matter halos over the redshift range 0 < z < 3. For galaxies, we use the measured sizes from deep images taken with Hubble Space Telescope for the Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey; for halos, we use the inferred sizes from abundance matching to cosmological dark matter simulations via a stellar mass–halo mass (SMHM) relation. For this purpose, we derive a new SMHM relation based on the same selection criteria and other assumptions asmore » for our sample of galaxies with size measurements. As a check on the robustness of our results, we also derive R {sub eff}–R {sub 200} {sub c} relations for three independent SMHM relations from the literature. We find that galaxy R {sub eff} is proportional on average to halo R {sub 200} {sub c}, confirming and extending to high redshifts the z = 0 results of Kravtsov. Late-type galaxies (with low Sérsic index and high specific star formation rate (sSFR)) follow a linear R {sub eff}– R {sub 200} {sub c} relation, with effective radii at 0.5 < z < 3 close to those predicted by simple models of disk formation; at z < 0.5, the sizes of late-type galaxies appear to be slightly below this prediction. Early-type galaxies (with high Sérsic index and low sSFR) follow a roughly parallel R {sub eff}– R {sub 200} {sub c} relation, ∼0.2–0.3 dex below the one for late-type galaxies. Our observational results, reinforced by recent hydrodynamical simulations, indicate that galaxies grow quasi-homologously with their dark matter halos.« less

  11. A γ-ray burst at a redshift of z~8.2

    NASA Astrophysics Data System (ADS)

    Tanvir, N. R.; Fox, D. B.; Levan, A. J.; Berger, E.; Wiersema, K.; Fynbo, J. P. U.; Cucchiara, A.; Krühler, T.; Gehrels, N.; Bloom, J. S.; Greiner, J.; Evans, P. A.; Rol, E.; Olivares, F.; Hjorth, J.; Jakobsson, P.; Farihi, J.; Willingale, R.; Starling, R. L. C.; Cenko, S. B.; Perley, D.; Maund, J. R.; Duke, J.; Wijers, R. A. M. J.; Adamson, A. J.; Allan, A.; Bremer, M. N.; Burrows, D. N.; Castro-Tirado, A. J.; Cavanagh, B.; de Ugarte Postigo, A.; Dopita, M. A.; Fatkhullin, T. A.; Fruchter, A. S.; Foley, R. J.; Gorosabel, J.; Kennea, J.; Kerr, T.; Klose, S.; Krimm, H. A.; Komarova, V. N.; Kulkarni, S. R.; Moskvitin, A. S.; Mundell, C. G.; Naylor, T.; Page, K.; Penprase, B. E.; Perri, M.; Podsiadlowski, P.; Roth, K.; Rutledge, R. E.; Sakamoto, T.; Schady, P.; Schmidt, B. P.; Soderberg, A. M.; Sollerman, J.; Stephens, A. W.; Stratta, G.; Ukwatta, T. N.; Watson, D.; Westra, E.; Wold, T.; Wolf, C.

    2009-10-01

    Long-duration γ-ray bursts (GRBs) are thought to result from the explosions of certain massive stars, and some are bright enough that they should be observable out to redshifts of z>20 using current technology. Hitherto, the highest redshift measured for any object was z = 6.96, for a Lyman-α emitting galaxy. Here we report that GRB090423 lies at a redshift of z~8.2, implying that massive stars were being produced and dying as GRBs ~630Myr after the Big Bang. The burst also pinpoints the location of its host galaxy.

  12. Z-scan theory for nonlocal nonlinear media with simultaneous nonlinear refraction and nonlinear absorption.

    PubMed

    Rashidian Vaziri, Mohammad Reza

    2013-07-10

    In this paper, the Z-scan theory for nonlocal nonlinear media has been further developed when nonlinear absorption and nonlinear refraction appear simultaneously. To this end, the nonlinear photoinduced phase shift between the impinging and outgoing Gaussian beams from a nonlocal nonlinear sample has been generalized. It is shown that this kind of phase shift will reduce correctly to its known counterpart for the case of pure refractive nonlinearity. Using this generalized form of phase shift, the basic formulas for closed- and open-aperture beam transmittances in the far field have been provided, and a simple procedure for interpreting the Z-scan results has been proposed. In this procedure, by separately performing open- and closed-aperture Z-scan experiments and using the represented relations for the far-field transmittances, one can measure the nonlinear absorption coefficient and nonlinear index of refraction as well as the order of nonlocality. Theoretically, it is shown that when the absorptive nonlinearity is present in addition to the refractive nonlinearity, the sample nonlocal response can noticeably suppress the peak and enhance the valley of the Z-scan closed-aperture transmittance curves, which is due to the nonlocal action's ability to change the beam transverse dimensions.

  13. Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins

    PubMed Central

    Yang, Aimin; Pantoom, Supansa; Wu, Yao-Wen

    2017-01-01

    Autophagy is a conserved cellular process involved in the elimination of proteins and organelles. It is also used to combat infection with pathogenic microbes. The intracellular pathogen Legionella pneumophila manipulates autophagy by delivering the effector protein RavZ to deconjugate Atg8/LC3 proteins coupled to phosphatidylethanolamine (PE) on autophagosomal membranes. To understand how RavZ recognizes and deconjugates LC3-PE, we prepared semisynthetic LC3 proteins and elucidated the structures of the RavZ:LC3 interaction. Semisynthetic LC3 proteins allowed the analysis of structure-function relationships. RavZ extracts LC3-PE from the membrane before deconjugation. RavZ initially recognizes the LC3 molecule on membranes via its N-terminal LC3-interacting region (LIR) motif. The RavZ α3 helix is involved in extraction of the PE moiety and docking of the acyl chains into the lipid-binding site of RavZ that is related in structure to that of the phospholipid transfer protein Sec14. Thus, Legionella has evolved a novel mechanism to specifically evade host autophagy. DOI: http://dx.doi.org/10.7554/eLife.23905.001 PMID:28395732

  14. Predicting Site Index in Young Black Walnut Plantations

    Treesearch

    Craig K. Losche; Richard C. Schlesinger

    1975-01-01

    Prediction of black walnut height at age 25 is graphically represented for two soil-site groups. The landowner or manager can use this growth prediction to assess the productivity of yung black walnut plantations.

  15. Transition between B-DNA and Z-DNA: free energy landscape for the B-Z junction propagation.

    PubMed

    Lee, Juyong; Kim, Yang-Gyun; Kim, Kyeong Kyu; Seok, Chaok

    2010-08-05

    Canonical, right-handed B-DNA can be transformed into noncanonical, left-handed Z-DNA in vitro at high salt concentrations or in vivo under physiological conditions. The molecular mechanism of this drastic conformational transition is still unknown despite numerous studies. Inspired by the crystal structure of a B-Z junction and the previous zipper model, we show here, with the aid of molecular dynamics simulations, that a stepwise propagation of a B-Z junction is a highly probable pathway for the B-Z transition. In this paper, the movement of a B-Z junction by a two-base-pair step in a double-strand nonamer, [d(GpCpGpCpGpCpGpCpG)](2), is considered. Targeted molecular dynamics simulations and umbrella sampling for this transition resulted in a transition pathway with a free energy barrier of 13 kcal/mol. This barrier is much more favorable than those obtained from previous atomistic simulations that lead to concerted transitions of the whole strands. The free energy difference between B-DNA and Z-DNA evaluated from our simulation is 0.9 kcal/mol per dinucleotide unit, which is consistent with previous experiments. The current computation thus strongly supports the proposal that the B-Z transition involves a relatively fast extension of B-DNA or Z-DNA by sequential propagation of B-Z junctions once nucleation of junctions is established.

  16. 77 FR 65361 - Reorganization/Expansion of Foreign-z Under Alternative Site Framework; Galveston, TX

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-26

    ... 3 would be categorized as magnet sites and Sites 4, 5 and 6 would be categorized as usage-driven... provisions for magnet sites that would terminate authority for Site 2 if not activated by October 31, 2022...

  17. The half-metallicity of LiMgPdSn-type quaternary Heusler alloys FeMnScZ (Z=Al, Ga, In): A first-principle study

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gao, Y. C., E-mail: gaoyc1963@126.com; Gao, X.

    2015-05-15

    Based on the first-principles calculations, quaternary Heusler alloys FeMnScZ (Z=Al, Ga, In) including its phase stability, band gap, the electronic structures and magnetic properties has been studied systematically. We have found that, in terms of the equilibrium lattice constants, FeMnScZ (Z=Al, Ga, In) are half-metallic ferrimagnets, which can sustain the high spin polarization under a very large amount of lattice distortions. The half-metallic band gap in FeMnScZ (Z=Al, Ga, In) alloys originates from the t{sub 1u}-t{sub 2g} splitting instead of the e{sub u}-t{sub 1u} splitting. The total magnetic moments are 3μB per unit cell for FeMnScZ (Z=Al, Ga, In) alloysmore » following the Slater–Pauling rule with the total number of valence electrons minus 18 rather than 24. According to the study, the conclusion can be drawn that all of these compounds which have a negative formation energy are possible to be synthesized experimentally.« less

  18. The half-metallicity of LiMgPdSn-type quaternary Heusler alloys FeMnScZ (Z=Al, Ga, In): A first-principle study

    NASA Astrophysics Data System (ADS)

    Gao, Y. C.; Gao, X.

    2015-05-01

    Based on the first-principles calculations, quaternary Heusler alloys FeMnScZ (Z=Al, Ga, In) including its phase stability, band gap, the electronic structures and magnetic properties has been studied systematically. We have found that, in terms of the equilibrium lattice constants, FeMnScZ (Z=Al, Ga, In) are half-metallic ferrimagnets, which can sustain the high spin polarization under a very large amount of lattice distortions. The half-metallic band gap in FeMnScZ (Z=Al, Ga, In) alloys originates from the t1u-t2g splitting instead of the eu-t1u splitting. The total magnetic moments are 3μB per unit cell for FeMnScZ (Z=Al, Ga, In) alloys following the Slater-Pauling rule with the total number of valence electrons minus 18 rather than 24. According to the study, the conclusion can be drawn that all of these compounds which have a negative formation energy are possible to be synthesized experimentally.

  19. Index to water data

    NASA Astrophysics Data System (ADS)

    The U.S. Geological Survey recently published the seventh edition of the index to the information catalog on surface and ground water data. The data, collected at more than 100,000 sites across the country, are based on information provided by federal, state, and local agencies. The index also includes data for parts of Canada and Mexico.The catalog does not contain the actual data, but it does provide information on where and by whom data are being collected, the types of data acquired, and how to obtain the data.

  20. Half-metallic ferromagnetism in {Ti}2 {IrZ} (Z = B, Al, Ga, and In) Heusler alloys: A density functional study

    NASA Astrophysics Data System (ADS)

    Sadeghi, K. H.; Ahmadian, F.

    2018-02-01

    The first-principle density functional theory (DFT) calculations were employed to investigate the electronic structures, magnetic properties and half-metallicity of {Ti}2 {IrZ} (Z = B, Al, Ga, and In) Heusler alloys with {AlCu}2 {Mn}- and {CuHg}2 {Ti}-type structures within local density approximation and generalised gradient approximation for the exchange correlation potential. It was found that {CuHg}2 {Ti}-type structure in ferromagnetic state was energetically more favourable than {AlCu}2 {Mn}-type structure in all compounds except {Ti}2 {IrB} which was stable in {AlCu}2 {Mn}-type structure in non-magnetic state. {Ti}2 {IrZ} (Z = B, Al, Ga, and In) alloys in {CuHg}2 {Ti}-type structure were half-metallic ferromagnets at their equilibrium lattice constants. Half-metallic band gaps were respectively equal to 0.87, 0.79, 0.75, and 0.73 eV for {Ti}2 {IrB}, {Ti}2 {IrAl}, {Ti}2 {IrGa}, and {Ti}2 {IrIn}. The origin of half-metallicity was discussed for {Ti}2 {IrGa} using the energy band structure. The total magnetic moments of {Ti}2 {IrZ} (Z = B, Al, Ga, and In) compounds in {CuHg}2 {Ti}-type structure were obtained as 2μ B per formula unit, which were in agreement with Slater-Pauling rule (M_{tot} =Z_{tot}-18). All the four compounds were half-metals in a wide range of lattice constants indicating that they may be suitable and promising materials for future spintronic applications.

  1. Simulation of leaf area index on site scale based on model data fusion

    NASA Astrophysics Data System (ADS)

    Yang, Y.; Wang, J. B.

    2017-12-01

    The world's grassland area is about 24 × 108hm2, accounting for about one-fifth of the global land area. It is one of the most widely distributed terrestrial ecosystems on Earth. And currently, it is the most affected area of human activity. A considerable portion of the global CO2 emissions are fixed by grassland, and the grassland carbon cycle plays an important role in the global carbon cycle (Li Bo, Yongshen Peng, Li Yao, China's Prairie, 1990). In recent years, the carbon cycle and its influencing factors of grassland ecosystems have become one of the hotspots in ecology, geology, botany and agronomy under the background of global change ( Mu Shaojie, 2014) . And the model is now as a popular and effective method of research. However, there are still some uncertainties in this approach. CEVSA ( Carbon Exchange between Vegetation, Soil and Atmosphere) is a biogeochemical cycle model based on physiological and ecological processes to simulate plant-soil-atmosphere system energy exchange and water-carbon-nitrogen coupling cycles (Cao at al., 1998a; 1998b; Woodward et al., 1995). In this paper, the remote sensing observation data of leaf area index are integrated into the model, and the CEVSA model of site version is optimized by Markov chain-Monte Carlo method to achieve the purpose of increasing the accuracy of model results.

  2. An archaebacterial homologue of the essential eubacterial cell division protein FtsZ.

    PubMed Central

    Baumann, P; Jackson, S P

    1996-01-01

    Life falls into three fundamental domains--Archaea, Bacteria, and Eucarya (formerly archaebacteria, eubacteria, and eukaryotes,. respectively). Though Archaea lack nuclei and share many morphological features with Bacteria, molecular analyses, principally of the transcription and translation machineries, have suggested that Archaea are more related to Eucarya than to Bacteria. Currently, little is known about the archaeal cell division apparatus. In Bacteria, a crucial component of the cell division machinery is FtsZ, a GTPase that localizes to a ring at the site of septation. Interestingly, FtsZ is distantly related in sequence to eukaryotic tubulins, which also interact with GTP and are components of the eukaryotic cell cytoskeleton. By screening for the ability to bind radiolabeled nucleotides, we have identified a protein of the hyperthermophilic archaeon Pyrococcus woesei that interacts tightly and specifically with GTP. Furthermore, through screening an expression library of P. woesei genomic DNA, we have cloned the gene encoding this protein. Sequence comparisons reveal that the P. woesei GTP-binding protein is strikingly related in sequence to eubacterial FtsZ and is marginally more similar to eukaryotic tubulins than are bacterial FtsZ proteins. Phylogenetic analyses reinforce the notion that there is an evolutionary linkage between FtsZ and tubulins. These findings suggest that the archaeal cell division apparatus may be fundamentally similar to that of Bacteria and lead us to consider the evolutionary relationships between Archaea, Bacteria, and Eucarya. Images Fig. 1 Fig. 2 PMID:8692886

  3. An archaebacterial homologue of the essential eubacterial cell division protein FtsZ.

    PubMed

    Baumann, P; Jackson, S P

    1996-06-25

    Life falls into three fundamental domains--Archaea, Bacteria, and Eucarya (formerly archaebacteria, eubacteria, and eukaryotes,. respectively). Though Archaea lack nuclei and share many morphological features with Bacteria, molecular analyses, principally of the transcription and translation machineries, have suggested that Archaea are more related to Eucarya than to Bacteria. Currently, little is known about the archaeal cell division apparatus. In Bacteria, a crucial component of the cell division machinery is FtsZ, a GTPase that localizes to a ring at the site of septation. Interestingly, FtsZ is distantly related in sequence to eukaryotic tubulins, which also interact with GTP and are components of the eukaryotic cell cytoskeleton. By screening for the ability to bind radiolabeled nucleotides, we have identified a protein of the hyperthermophilic archaeon Pyrococcus woesei that interacts tightly and specifically with GTP. Furthermore, through screening an expression library of P. woesei genomic DNA, we have cloned the gene encoding this protein. Sequence comparisons reveal that the P. woesei GTP-binding protein is strikingly related in sequence to eubacterial FtsZ and is marginally more similar to eukaryotic tubulins than are bacterial FtsZ proteins. Phylogenetic analyses reinforce the notion that there is an evolutionary linkage between FtsZ and tubulins. These findings suggest that the archaeal cell division apparatus may be fundamentally similar to that of Bacteria and lead us to consider the evolutionary relationships between Archaea, Bacteria, and Eucarya.

  4. Bioimpedance index for measurement of total body water in severely malnourished children: Assessing the effect of nutritional oedema.

    PubMed

    Girma, Tsinuel; Kæstel, Pernille; Workeneh, Netsanet; Mølgaard, Christian; Eaton, Simon; Andersen, Gregers S; Michaelsen, Kim F; Friis, Henrik; Wells, Jonathan C K

    2016-06-01

    Restoration of body composition indicates successful management of severe acute malnutrition (SAM). Bioimpedance (BI) index (height(2)/resistance) is used to predict total body water (TBW) but its performance in SAM, especially with oedema, requires further investigation. Children with SAM (mid-arm circumference <11.0 cm or weight-for-height <70% of median of NCHS reference and/or nutritional oedema) admitted to Jimma University Hospital were included. Tetrapolar-whole-body impedance (Z), resistance (R) and reactance (Xc) were measured at 50 and 200 kHzs. Pre- and post-deuterium dose saliva samples were analysed using isotope-ratio mass spectrometry. TBW was regressed on H(2)/Z. Xc and R were height (H)-indexed, and Xc/H plotted against R/H. Thirty five children (16 non-oedematous and 19 oedematous) with median (interquartile range) age of 42 (26-54) months were studied. Height-for-age z-score (mean ± SD) was low in both non-oedematous (-3.9 ± 2.8) and oedematous (-3.6 ± 1.7) children. Oedematous children had lower BI parameters than non-oedematous (p < 0.001) and hence higher H(2)/Z for a given amount of TBW. At both 50 and 200 kHz, association between H(2)/Z and TBW was stronger in non-oedematous children than oedematous (60% higher coefficient of determination and 20% lower standard error of estimate). Intercepts and regression estimates at 50 and 200 kHz were similar, in both oedematous and non-oedematous children. In children with oedematous SAM, BI index was weak in predicting TBW. Moreover, predicted TBWs at 200 kHz and 50 kHz did not differ and hence BI measurement at 50 kHz is still practical for TBW estimation. Copyright © 2015. Published by Elsevier Ltd.

  5. Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules.

    PubMed

    Tétart, F; Bouché, J P

    1992-03-01

    We show that the 53-nucleotide RNA molecule encoded by gene dicF blocks cell division in Escherichia coli by inhibiting the translation of ftsZ mRNA. Such a role for dicF had been predicted on the basis of the complementarity of DicF RNA with the ribosome-binding region of the ftsZ mRNA. An analysis of ftsZ expression at its chromosomal locus, and of an ftsZ-lacZ translational fusion controlled by promoters ftsZ1p and ftsZ2p only, indicates that ftsZ is not autoregulated. Partial inhibition of FtsZ synthesis leads to increased cell size. However, the number of FtsZ molecules per cell can be reduced threefold without affecting the division rate significantly. Our results suggest that septation is not triggered by a fixed number of newly synthesized FtsZ molecules per cell.

  6. The VIMOS Public Extragalactic Redshift Survey (VIPERS). The coevolution of galaxy morphology and colour to z 1

    NASA Astrophysics Data System (ADS)

    Krywult, J.; Tasca, L. A. M.; Pollo, A.; Vergani, D.; Bolzonella, M.; Davidzon, I.; Iovino, A.; Gargiulo, A.; Haines, C. P.; Scodeggio, M.; Guzzo, L.; Zamorani, G.; Garilli, B.; Granett, B. R.; de la Torre, S.; Abbas, U.; Adami, C.; Bottini, D.; Cappi, A.; Cucciati, O.; Franzetti, P.; Fritz, A.; Le Brun, V.; Le Fèvre, O.; Maccagni, D.; Małek, K.; Marulli, F.; Polletta, M.; Tojeiro, R.; Zanichelli, A.; Arnouts, S.; Bel, J.; Branchini, E.; Coupon, J.; De Lucia, G.; Ilbert, O.; McCracken, H. J.; Moscardini, L.; Takeuchi, T. T.

    2017-02-01

    Context. The study of the separation of galaxy types into different classes that share the same characteristics, and of the evolution of the specific parameters used in the classification are fundamental for understanding galaxy evolution. Aims: We explore the evolution of the statistical distribution of galaxy morphological properties and colours combining high-quality imaging data from the CFHT Legacy Survey with the large number of redshifts and extended photometry from the VIPERS survey. Methods: Galaxy structural parameters were combined with absolute magnitudes, colours and redshifts in order to trace evolution in a multi-parameter space. Using a new method we analysed the combination of colours and structural parameters of early- and late-type galaxies in luminosity-redshift space. Results: We find that both the rest-frame colour distributions in the (U-B) vs. (B-V) plane and the Sérsic index distributions are well fitted by a sum of two Gaussians, with a remarkable consistency of red-spheroidal and blue-disky galaxy populations, over the explored redshift (0.5 < z < 1) and luminosity (-1.5 < B-B∗ < 1.0) ranges. The combination of the rest-frame colour and Sérsic index as a function of redshift and luminosity allows us to present the structure of both galaxy types and their evolution. We find that early-type galaxies display only a slow change in their concentrations after z = 1. Their high concentrations were already established at z 1 and depend much more strongly on their luminosity than redshift. In contrast, late-type galaxies clearly become more concentrated with cosmic time with only little evolution in colour, which remains dependent mainly on their luminosity. Conclusions: The combination of rest-frame colours and Sérsic index as a function of redshift and luminosity leads to a precise statistical description of the structure of galaxies and their evolution. Additionally, the proposed method provides a robust way to split galaxies into early

  7. Mapping Flexibility and the Assembly Switch of Cell Division Protein FtsZ by Computational and Mutational Approaches*♦

    PubMed Central

    Martín-Galiano, Antonio J.; Buey, Rubén M.; Cabezas, Marta; Andreu, José M.

    2010-01-01

    The molecular switch for nucleotide-regulated assembly and disassembly of the main prokaryotic cell division protein FtsZ is unknown despite the numerous crystal structures that are available. We have characterized the functional motions in FtsZ with a computational consensus of essential dynamics, structural comparisons, sequence conservation, and networks of co-evolving residues. Employing this information, we have constructed 17 mutants, which alter the FtsZ functional cycle at different stages, to modify FtsZ flexibility. The mutant phenotypes ranged from benign to total inactivation and included increased GTPase, reduced assembly, and stabilized assembly. Six mutations clustering at the long cleft between the C-terminal β-sheet and core helix H7 deviated FtsZ assembly into curved filaments with inhibited GTPase, which still polymerize cooperatively. These mutations may perturb the predicted closure of the C-terminal domain onto H7 required for switching between curved and straight association modes and for GTPase activation. By mapping the FtsZ assembly switch, this work also gives insight into FtsZ druggability because the curved mutations delineate the putative binding site of the promising antibacterial FtsZ inhibitor PC190723. PMID:20472561

  8. A2111: A z= 0.23 Butcher-Oemler Cluster with a Non-Isothermal Atmosphere and Normal Metallicity

    NASA Technical Reports Server (NTRS)

    Wang, Q. Daniel; Henriksen, Mark

    1998-01-01

    We report results from an x-ray spectral study of the z=0.23 Abell 2111 galaxy cluster using the Advanced Satellite for Astrophysics and Cosmology and the ROSAT Position Sensitive Proportional Counter. By correcting for the energy-dependent point-spread function of the instruments, we have examined the temperature structure of the cluster. The cluster's core within 3 is found to have a temperature of 5.4 +/- 0.5 keV, significantly higher than 2.8 +/-0.7 keV in the surrounding region of r = 3-6. This radially decreasing temperature structure can be parameterized by a polytropic index of gamma less than 1.4. Furthermore, the intracluster medium appears clumpy on scales less than 1. Early studies have revealed that the x-ray centroid of the cluster shifts with spatial scale and the overall optical and x-ray morphology is strongly elongated. These results together suggest that A2111 in undergoing a merger, which is likely responsible for the high fraction of blue galaxies observed in the cluster. We have further measured the abundance of the medium as 0.25 +/- 0.14 solar. This value is similar to those of nearby clusters which do not show a large blue galaxy function, suggesting that star formation in disk galaxies and subsequent loss to the intracluster medium do not drastically alter the average abundance of a cluster since z=0.23.

  9. Development of policies for Natura 2000 sites: a multi-criteria approach to support decision makers.

    PubMed

    Cortina, Carla; Boggia, Antonio

    2014-08-01

    The aim of this study is to present a methodology to support decision makers in the choice of Natura 2000 sites needing an appropriate management plan to ensure a sustainable socio-economic development. In order to promote sustainable development in the Natura 2000 sites compatible with nature preservation, conservation measures or management plans are necessary. The main issue is to decide when only conservation measures can be applied and when the sites need an appropriate management plan. We present a case study for the Italian Region of Umbria. The methodology is based on a multi-criteria approach to identify the biodiversity index (BI), and on the development of a human activities index (HAI). By crossing the two indexes for each site on a Cartesian plane, four groups of sites were identified. Each group corresponds to a specific need for an appropriate management plan. Sites in the first group with a high level both of biodiversity and human activities have the most urgent need of an appropriate management plan to ensure sustainable development. The proposed methodology and analysis is replicable in other regions or countries by using the data available for each site in the Natura 2000 standard data form. A multi-criteria analysis is especially suitable for supporting decision makers when they deal with a multidimensional decision process. We found the multi-criteria approach particularly sound in this case, due to the concept of biodiversity itself, which is complex and multidimensional, and to the high number of alternatives (Natura 2000 sites) to be assessed. Copyright © 2014 Elsevier Ltd. All rights reserved.

  10. Radiation Induced Degradation of the White Thermal Control Paints Z-93 and Z-93P

    NASA Technical Reports Server (NTRS)

    Edwards, D. L.; Zwiener, J. M.; Wertz, G. E.; Vaughn, J. A.; Kamenetzky, R. R.; Finckenor, M. M.; Meshishnek, M. J.

    1996-01-01

    This paper details a comparison analysis of the zinc oxide pigmented white thermal control paints Z-93 and Z-93P. Both paints were simultaneously exposed to combined space environmental effects and analyzed using an in-vacuo reflectance technique. The dose applied to the paints was approximately equivalent to 5 years in a geosynchronous orbit. This comparison analysis showed that Z-93P is an acceptable substitute for Z-93. Irradiated samples of Z-93 and Z-93P were subjected to additional exposures of ultraviolet (UV) radiation and analyzed using the in-vacuo reflectance technique to investigate UV activated reflectance recovery. Both samples showed minimal UV activated reflectance recovery after an additional 190 equivalent sun hour (ESH) exposure. Reflectance response utilizing nitrogen as a repressurizing gas instead of air was also investigated. This investigation found the rates of reflectance recovery when repressurized with nitrogen are slower than when repressurized with air.

  11. Social jetlag, chronotype, and body mass index in 14 to 17 year old adolescents

    PubMed Central

    Malone, Susan Kohl; Zemel, Babette; Compher, Charlene; Souders, Margaret; Chittams, Jesse; Thompson, Aleda Leis; Pack, Allan; Lipman, Terri H.

    2016-01-01

    The relationship between sleep duration and obesity in adolescents is inconclusive. This may stem from a more complex relationship between sleep and obesity than previously considered. Shifts towards evening preferences, later sleep-wake times, and irregular sleep-wake patterns are typical during adolescence but their relationship to body mass index has been relatively unexplored. This cross sectional study examined associations between sleep duration, midpoint of sleep, and social jetlag (estimated from seven days of continuous actigraphy monitoring) and morningness/eveningness with body mass indexes (BMI z scores) and waist to height ratios in 14 to 17 year old adolescents. Seventy participants were recruited from 9th and 10th grades at a public high school. Participant characteristics were as follows: 74% female, 75% post-pubertal, 36% Hispanic, 38% White, 22% Black, 4% Asian, and 64% free/reduced lunch participants with a mean age of 15.5 (SD, 0.7). Forty one percent of the participants were obese (BMI ≥ 95th percentile); 54% were abdominally obese (waist to height ratio ≥ 0.5). Multivariable general linear models were used to estimate the association between the independent variables (school night sleep duration, free night sleep duration, midpoint of sleep (corrected), social jetlag, and morningness/eveningness) and the dependent variables (BMI z scores and waist to height ratios). Social jetlag positively associated with BMI z scores (p < 0.01) and waist to height ratios (p = 0.01). Midpoint of sleep (corrected) positively associated with waist to height ratios (p = 0.01). After adjusting for social jetlag, school night sleep duration was not associated with waist to height ratios or BMI z scores. Morningness/eveningness did not moderate the association between sleep duration and BMI z scores. Findings from this study suggest that chronobiological approaches to preventing and treating obesity may be important for accelerating progress in reducing obesity

  12. Development of a benthic multimetric index for the Serra da Bocaina bioregion in Southeast Brazil.

    PubMed

    Baptista, D F; Henriques-Oliveira, A L; Oliveira, R B S; Mugnai, R; Nessimian, J L; Buss, D F

    2013-08-01

    Brazil faces a challenge to develop biomonitoring tools to be used in water quality assessment programs, but few multimetric indices were developed so far. This study is part of an effort to test and implement programs using benthic macroinvertebrates as bioindicators in Rio de Janeiro State. Our aim was first to test the Multimetric Index for Serra dos Órgãos (SOMI) for a different area--Serra da Bocaina (SB)--in the same ecoregion. We sampled 27 streams of different sizes and altitudes in the SB region. Despite the environmental similarities, results indicated biological differences between reference sites of the two regions. Considering these differences, we decided to develop an index specific for the SB region, the Serra da Bocaina Multimetric Index (MISB). We tested twenty-two metrics for sensitivity to impairment and redundancy, and six metrics were considered valid to integrate the MISB: Family Richness, Trichoptera Richness, % Coleoptera, % Diptera, IBE-IOC index, EPT / Chironomidae ratio. A test of the MISB in eleven sites indicated it was more related to land-use and water physico-chemical parameters than with altitude or stream width, being a useful tool for the monitoring and assessment of streams in the bioregion.

  13. A Discrete-Time Average Model Based Predictive Control for Quasi-Z-Source Inverter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Liu, Yushan; Abu-Rub, Haitham; Xue, Yaosuo

    A discrete-time average model-based predictive control (DTA-MPC) is proposed for a quasi-Z-source inverter (qZSI). As a single-stage inverter topology, the qZSI regulates the dc-link voltage and the ac output voltage through the shoot-through (ST) duty cycle and the modulation index. Several feedback strategies have been dedicated to produce these two control variables, among which the most popular are the proportional–integral (PI)-based control and the conventional model-predictive control (MPC). However, in the former, there are tradeoffs between fast response and stability; the latter is robust, but at the cost of high calculation burden and variable switching frequency. Moreover, they require anmore » elaborated design or fine tuning of controller parameters. The proposed DTA-MPC predicts future behaviors of the ST duty cycle and modulation signals, based on the established discrete-time average model of the quasi-Z-source (qZS) inductor current, the qZS capacitor voltage, and load currents. The prediction actions are applied to the qZSI modulator in the next sampling instant, without the need of other controller parameters’ design. A constant switching frequency and significantly reduced computations are achieved with high performance. Transient responses and steady-state accuracy of the qZSI system under the proposed DTA-MPC are investigated and compared with the PI-based control and the conventional MPC. Simulation and experimental results verify the effectiveness of the proposed approach for the qZSI.« less

  14. A Discrete-Time Average Model Based Predictive Control for Quasi-Z-Source Inverter

    DOE PAGES

    Liu, Yushan; Abu-Rub, Haitham; Xue, Yaosuo; ...

    2017-12-25

    A discrete-time average model-based predictive control (DTA-MPC) is proposed for a quasi-Z-source inverter (qZSI). As a single-stage inverter topology, the qZSI regulates the dc-link voltage and the ac output voltage through the shoot-through (ST) duty cycle and the modulation index. Several feedback strategies have been dedicated to produce these two control variables, among which the most popular are the proportional–integral (PI)-based control and the conventional model-predictive control (MPC). However, in the former, there are tradeoffs between fast response and stability; the latter is robust, but at the cost of high calculation burden and variable switching frequency. Moreover, they require anmore » elaborated design or fine tuning of controller parameters. The proposed DTA-MPC predicts future behaviors of the ST duty cycle and modulation signals, based on the established discrete-time average model of the quasi-Z-source (qZS) inductor current, the qZS capacitor voltage, and load currents. The prediction actions are applied to the qZSI modulator in the next sampling instant, without the need of other controller parameters’ design. A constant switching frequency and significantly reduced computations are achieved with high performance. Transient responses and steady-state accuracy of the qZSI system under the proposed DTA-MPC are investigated and compared with the PI-based control and the conventional MPC. Simulation and experimental results verify the effectiveness of the proposed approach for the qZSI.« less

  15. Monitoring boreal forest leaf area index across a Siberian burn chronosequence: a MODIS validation study

    USGS Publications Warehouse

    Cheng, X.; Vierling, Lee; Deering, D.; Conley, A.

    2005-01-01

    Landscapes containing differing amounts of ecological disturbance provide an excellent opportunity to validate and better understand the emerging Moderate Resolution Imaging Spectrometer (MODIS) vegetation products. Four sites, including 1‐year post‐fire coniferous, 13‐year post‐fire deciduous, 24‐year post‐fire deciduous, and >100 year old post‐fire coniferous forests, were selected to serve as a post‐fire chronosequence in the central Siberian region of Krasnoyarsk (57.3°N, 91.6°E) with which to study the MODIS leaf area index (LAI) and vegetation index (VI) products. The collection 4 MODIS LAI product correctly represented the summer site phenologies, but significantly underestimated the LAI value of the >100 year old coniferous forest during the November to April time period. Landsat 7‐derived enhanced vegetation index (EVI) performed better than normalized difference vegetation index (NDVI) to separate the deciduous and conifer forests, and both indices contained significant correlation with field‐derived LAI values at coniferous forest sites (r 2 = 0.61 and r 2 = 0.69, respectively). The reduced simple ratio (RSR) markedly improved LAI prediction from satellite measurements (r 2 = 0.89) relative to NDVI and EVI. LAI estimates derived from ETM+ images were scaled up to evaluate the 1 km resolution MODIS LAI product; from this analysis MODIS LAI overestimated values in the low LAI deciduous forests (where LAI<5) and underestimated values in the high LAI conifer forests (where LAI>6). Our results indicate that further research on the MODIS LAI product is warranted to better understand and improve remote LAI quantification in disturbed forest landscapes over the course of the year.

  16. Source Header List. Volume 2. L through Z

    DTIC Science & Technology

    1998-07-01

    U 2-- 2- o-h 2-2 W- 1- 2- V) 2- aJ w- 2 w 22 2 - 3 - 2- 1-U.M0 .1- .1-0 IU LL. 1-W ILLJW tun wWA 1-WN 2 W U lox W -W 1W O WE CoO 0o oU- 0Co0100I C...0.4z a.U-W Z<. a-C a. a. ZAw a. a-I- a 1- UC I4 M M0 14 04 _ 4 " ( M Z 0 "( X 4 " ~ 14 < "U " 4 - 0.U_ Z1-0 1- 1- LU LU Wz z WE W z LUz Z W" ZU -J 2...34j1.4 >In >’-’ m130 >w.-Ia aW w44 40 40 <W~ <W ~ 0 41~ <W <Z <ZW 4z Z444 zaw a UI z K za Z- n I- 20 9a3 ZI aI- OIw OIm2 >- Z 2 2 Z 2 2 2 Z 2 2 Z 2 2

  17. A multiple index integrating different levels of organization.

    PubMed

    Cortes, Rui; Hughes, Samantha; Coimbra, Ana; Monteiro, Sandra; Pereira, Vítor; Lopes, Marisa; Pereira, Sandra; Pinto, Ana; Sampaio, Ana; Santos, Cátia; Carrola, João; de Jesus, Joaquim; Varandas, Simone

    2016-10-01

    Many methods in freshwater biomonitoring tend to be restricted to a few levels of biological organization, limiting the potential spectrum of measurable of cause-effect responses to different anthropogenic impacts. We combined distinct organisational levels, covering biological biomarkers (histopathological and biochemical reactions in liver and fish gills), community based bioindicators (fish guilds, invertebrate metrics/traits and chironomid pupal exuviae) and ecosystem functional indicators (decomposition rates) to assess ecological status at designated Water Framework Directive monitoring sites, covering a gradient of human impact across several rivers in northern Portugal. We used Random Forest to rank the variables that contributed more significantly to successfully predict the different classes of ecological status and also to provide specific cut levels to discriminate each WFD class based on reference condition. A total of 59 Biological Quality Elements and functional indicators were determined using this procedure and subsequently applied to develop the integrated Multiple Ecological Level Index (MELI Index), a potentially powerful bioassessment tool. Copyright © 2016 Elsevier Inc. All rights reserved.

  18. First steps in developing a multimetric macroinvertebrate index for the Ohio River

    USGS Publications Warehouse

    Applegate, J.M.; Baumann, P.C.; Emery, E.B.; Wooten, M.S.

    2007-01-01

    The causes of degradation of aquatic systems are often complex and stem from a variety of human influences. Comprehensive, multimetric biological indices have been developed to quantify this degradation and its effect on aquatic communities, and measure subsequent recovery from anthropogenic stressors. Traditionally, such indices have concentrated on small-to medium-sized streams. Recently, however, the Ohio River Fish Index (ORFIn) was created to assess biotic integrity in the Ohio River. The goal of the present project was to begin developing a companion Ohio River multimetric index using benthic macroinvertebrates. Hester-Dendy multiplate samplers were used to evaluate benthic macroinvertebrate assemblages in relation to a gradient of water quality disturbance, represented by varying distances downstream of industrial and municipal wastewater outfalls in the Ohio River. In August 1999 and 2000, samplers were set every 100 m downstream of outfalls (12 outfalls in 1999, 22 in 2000) for 300-1000 m, as well as at upstream reference sites. Candidate metrics (n = 55) were examined to determine which have potential to detect changes in water quality downstream of outfalls. These individual measures of community structure were plotted against distance downstream of each outfall to determine their response to water quality disturbance. Values at reference and outfall sites were also compared. Metrics that are ecologically relevant and showed a response to outfall disturbance were identified as potentially valuable in a multimetric index. Multiple box plots of index scores indicated greater response to outfall disturbance during periods of low-flow, and longitudinal river-wide trends. Evaluation of other types of anthropogenic disturbance, as well as continued analysis of the effects of chemical water quality on macroinvertebrate communities in future years will facilitate further development of a multimetric benthic macroinvertebrate index to evaluate biotic integrity in

  19. Site-specific photoconjugation of antibodies using chemically synthesized IgG-binding domains.

    PubMed

    Perols, Anna; Karlström, Amelie Eriksson

    2014-03-19

    Site-specific labeling of antibodies can be performed using the immunoglobulin-binding Z domain, derived from staphylococcal protein A (SpA), which has a well-characterized binding site in the Fc region of antibodies. By introducing a photoactivable probe in the Z domain, a covalent bond can be formed between the Z domain and the antibody by irradiation with UV light. The aim of this study was to improve the conjugation yield for labeling of different subclasses of IgG having different sequence composition, using a photoactivated Z domain variant. Four different variants of the Z domain (Z5BPA, Z5BBA, Z32BPA, and Z32BBA) were synthesized to investigate the influence of the position of the photoactivable probe and the presence of a flexible linker between the probe and the protein. For two of the variants, the photoreactive benzophenone group was introduced as part of an amino acid side chain by incorporation of the unnatural amino acid benzoylphenylalanine (BPA) during peptide synthesis. For the other two variants, the photoreactive benzophenone group was attached via a flexible linker by coupling of benzoylbenzoic acid (BBA) to the ε-amino group of a selectively deprotected lysine residue. Photoconjugation experiments using human IgG1, mouse IgG1, and mouse IgG2A demonstrated efficient conjugation for all antibodies. It was shown that differences in linker length had a large impact on the conjugation efficiency for labeling of mouse IgG1, whereas the positioning of the photoactivable probe in the sequence of the protein had a larger effect for mouse IgG2A. Conjugation to human IgG1 was only to a minor extent affected by position or linker length. For each subclass of antibody, the best variant tested using a standard conjugation protocol resulted in conjugation efficiencies of 41-66%, which corresponds to on average approximately one Z domain attached to each antibody. As a combination of the two best performing variants, Z5BBA and Z32BPA, a Z domain variant with

  20. Predictions of the residue cross-sections for the elements Z = 113 and Z = 114

    NASA Astrophysics Data System (ADS)

    Bouriquet, B.; Abe, Y.; Kosenko, G.

    2004-10-01

    A good reproduction of experimental excitation functions is obtained for the 1 n reactions producing the elements with Z = 108, 110, 111 and 112 by the combined usage of the two-step model for fusion and the statistical decay code KEWPIE. Furthermore, the model provides reliable predictions of productions of the elements with Z = 113 and Z = 114 which will be a useful guide for plannings of experiments.

  1. Species-specific AFLP markers for identification of Zingiber officinale, Z. montanum and Z. zerumbet (Zingiberaceae).

    PubMed

    Ghosh, S; Majumder, P B; Sen Mandi, S

    2011-02-08

    The Zingiber genus, which includes the herbs known as gingers, commonly used in cooking, is well known for its medicinal properties, as described in the Indian pharmacopoeia. Different members of this genus, although somewhat similar in morphology, differ widely in their pharmacological and therapeutic properties. The most important species of this genus, with maximal therapeutic properties, is Zingiber officinale (garden ginger), which is often adulterated with other less-potent Zingiber sp. There is an existing demand in the herbal drug industry for an authentication system for the Zingiber sp in order to facilitate their commercial use as genuine phytoceuticals. To this end, we used amplified fragment length polymorphism (AFLP) to produce DNA fingerprints for three Zingiber species. Sixteen collections (six of Z. officinale, five of Z. montanum, and five of Z. zerumbet) were used in the study. Seven selective primer pairs were found to be useful for all the accessions. A total of 837 fragments were produced by these primer pairs. Species-specific markers were identified for all three Zingiber species (91 for Z. officinale, 82 for Z. montanum, and 55 for Z. zerumbet). The dendogram analysis generated from AFLP patterns showed that Z. montanum and Z. zerumbet are phylogenetically closer to each other than to Z. officinale. The AFLP fingerprints of the Zingiber species could be used to authenticate Zingiber sp-derived drugs and to resolve adulteration-related problems faced by the commercial users of these herbs.

  2. Estimating switchgrass productivity in the Great Plains using satellite vegetation index and site environmental variables

    USGS Publications Warehouse

    Gu, Yingxin; Wylie, Bruce K.; Howard, Daniel M.

    2015-01-01

    Switchgrass is being evaluated as a potential feedstock source for cellulosic biofuels and is being cultivated in several regions of the United States. The recent availability of switchgrass land cover maps derived from the National Agricultural Statistics Service cropland data layer for the conterminous United States provides an opportunity to assess the environmental conditions of switchgrass over large areas and across different geographic locations. The main goal of this study is to develop a data-driven multiple regression switchgrass productivity model and identify the optimal climate and environment conditions for the highly productive switchgrass in the Great Plains (GP). Environmental and climate variables used in the study include elevation, soil organic carbon, available water capacity, climate, and seasonal weather. Satellite-derived growing season averaged Normalized Difference Vegetation Index (GSN) was used as a proxy for switchgrass productivity. Multiple regression analyses indicate that there are strong correlations between site environmental variables and switchgrass productivity (r = 0.95). Sufficient precipitation and suitable temperature during the growing season (i.e., not too hot or too cold) are favorable for switchgrass growth. Elevation and soil characteristics (e.g., soil available water capacity) are also an important factor impacting switchgrass productivity. An anticipated switchgrass biomass productivity map for the entire GP based on site environmental and climate conditions and switchgrass productivity model was generated. Highly productive switchgrass areas are mainly located in the eastern part of the GP. Results from this study can help land managers and biofuel plant investors better understand the general environmental and climate conditions influencing switchgrass growth and make optimal land use decisions regarding switchgrass development in the GP.

  3. The Relationship of Severe Early Childhood Caries and Body Mass Index in a Group of 3- to 6-year-old Children in Shiraz.

    PubMed

    Edalat, A; Abbaszadeh, M; Eesvandi, M; Heidari, A

    2014-06-01

    Early childhood caries can cause pain, discomfort and also inability to have a healthy nutrition .Malnutrition can be characterized when there is a weight, height, and body mass index (BMI) deficiency. The aim of this study was to evaluate the relationship between the severe early childhood caries (based on the dmft index) and BMI in pre-school children in Shiraz. A descriptive analytical cross-sectional study was enrolled on 202 healthy preschool children with the age range of 3-6 years recruited from the kindergartens of different socio- economical parts of Shiraz, Iran. The Anthropometric measurements, weight and height were evaluated. The Z-scores were calculated employing WHO Anthro software (www.who.int/childgrowth/software/en/ index.html) to elucidate the subject's status on the age- and sex-specific growth chart. Every Child who has received two Z-scores under the normal value (< -2) was considered as abnormal. The relationship between dmft index and BMI was then investigated. The mean of dmft was 4.13. From children with severe early childhood caries, 12.5%were under weight, 5% had height deficiency and 19.5% had BMI deficiency, however, there was no significant relationship between increasing dmft and the height, weight and BMI deficiency. There was not a linear correlation between severe early childhood caries and BMI, height, and weight deficiency. An incidence of 55% was yielded for severe early childhood caries which was an additional finding of this study.

  4. Characterization of a neurokinin B receptor site in rat brain using a highly selective radioligand.

    PubMed

    Laufer, R; Gilon, C; Chorev, M; Selinger, Z

    1986-08-05

    We have recently characterized a tachykinin receptor subtype (SP-N) whose preferred ligand is the mammalian neuropeptide, neurokinin B (Laufer, R., Wormser, U., Friedman, Z. Y., Gilon, C., Chorev, M., and Selinger, Z. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 7444-7448). To investigate this novel tachykinin receptor, we have now prepared a radiolabeled peptide, N alpha-[( 125I]desamino-3-iodotyrosyl)-[Asp5,6, N-methyl-Phe8]substance P (5-11) heptapeptide (125I-BH-NH-Senktide), which selectively interacts with the SP-N receptor subtype. The binding of 125I-BH-NH-Senktide to rat cerebral cortex membranes was studied under conditions that minimized nonspecific binding. Unlike other tachykinin receptor probes, this radioligand is not degraded during the binding experiment. Binding of 125I-BH-NH-Senktide is reversible, saturable, and of high affinity (KD = 0.9 nM). The radioligand labels a single class of binding site (122 fmol binding sites/mg of protein), as indicated by a linear Scatchard plot and a Hill coefficient close to unity (nH = 1.05). The pharmacological specificity of this binding site corresponds to that of the neuronal SP-N receptor in guinea pig ileum myenteric plexus, which was determined by a functional bioassay. Among various rat brain regions, the highest binding was observed in the cerebral cortex, olfactory bulb, hypothalamus, and hippocampus. These results suggest the existence and specific distribution of a neurokinin B receptor site of the SP-N type in rat brain. 125I-BH-NH-Senktide is the first selective and potent probe for this receptor and is thus an important tool for further studies of its distribution, regulation, and functional role.

  5. Z-portal dark matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Arcadi, Giorgio; Institute for Theoretical Physics, Georg-August University Göttingen, Friedrich-Hund-Platz 1, Göttingen, D-37077; Mambrini, Yann

    2015-03-11

    We propose to generalize the extensions of the Standard Model where the Z boson serves as a mediator between the Standard Model sector and the dark sector χ. We show that, like in the Higgs portal case, the combined constraints from the recent direct searches restrict severely the nature of the coupling of the dark matter to the Z boson and set a limit m{sub χ}≳200 GeV (except in a very narrow region around the Z-pole region). Using complementarity between spin dependent, spin independent and FERMI limits, we predict the nature of this coupling, more specifically the axial/vectorial ratio thatmore » respects a thermal dark matter coupled through a Z-portal while not being excluded by the current observations. We also show that the next generation of experiments of the type LZ or XENON1T will test Z-portal scenario for dark matter mass up to 2 TeV. The condition of a thermal dark matter naturally predicts the spin-dependent scattering cross section on the neutron to be σ{sub χn}{sup SD}≃10{sup −40} cm{sup 2}, which then becomes a clear prediction of the model and a signature testable in the near future experiments.« less

  6. The index gage method to develop a flow duration curve from short-term streamflow records

    NASA Astrophysics Data System (ADS)

    Zhang, Zhenxing

    2017-10-01

    The flow duration curve (FDC) is one of the most commonly used graphical tools in hydrology and provides a comprehensive graphical view of streamflow variability at a particular site. For a gaged site, an FDC can be easily estimated with frequency analysis. When no streamflow records are available, regional FDCs are used to synthesize FDCs. However, studies on how to develop FDCs for sites with short-term records have been very limited. Deriving representative FDC when there are short-term hydrologic records is important. For instance, 43% of the 394 streamflow gages in Illinois have records of 20 years or fewer, and these short-term gages are often distributed in headwaters and contain valuable hydrologic information. In this study, the index gage method is proposed to develop FDCs using short-term hydrologic records via an information transfer technique from a nearby hydrologically similar index gage. There are three steps: (1) select an index gage; (2) determine changes of FDC; and (3) develop representative FDCs. The approach is tested using records from 92 U.S. Geological Survey streamflow gages in Illinois. A jackknife experiment is conducted to assess the performance. Bootstrap resampling is used to simulate various periods of records, i.e., 1, 2, 5, 10, 15, and 20 years of records. The results demonstrated that the index gage method is capable of developing a representative FDC using short-term records. Generally, the approach performance is improved when more hydrologic records are available, but the improvement appears to level off when the short-term gage has 10 years or more records.

  7. A z-Vertex Trigger for Belle II

    NASA Astrophysics Data System (ADS)

    Skambraks, S.; Abudinén, F.; Chen, Y.; Feindt, M.; Frühwirth, R.; Heck, M.; Kiesling, C.; Knoll, A.; Neuhaus, S.; Paul, S.; Schieck, J.

    2015-08-01

    The Belle II experiment will go into operation at the upgraded SuperKEKB collider in 2016. SuperKEKB is designed to deliver an instantaneous luminosity L = 8 ×1035 cm - 2 s - 1. The experiment will therefore have to cope with a much larger machine background than its predecessor Belle, in particular from events outside of the interaction region. We present the concept of a track trigger, based on a neural network approach, that is able to suppress a large fraction of this background by reconstructing the z (longitudinal) position of the event vertex within the latency of the first level trigger. The trigger uses the hit information from the Central Drift Chamber (CDC) of Belle II within narrow cones in polar and azimuthal angle as well as in transverse momentum (“sectors”), and estimates the z-vertex without explicit track reconstruction. The preprocessing for the track trigger is based on the track information provided by the standard CDC trigger. It takes input from the 2D track finder, adds information from the stereo wires of the CDC, and finds the appropriate sectors in the CDC for each track. Within the sector, the z-vertex is estimated by a specialized neural network, with the drift times from the CDC as input and a continuous output corresponding to the scaled z-vertex. The neural algorithm will be implemented in programmable hardware. To this end a Virtex 7 FPGA board will be used, which provides at present the most promising solution for a fully parallelized implementation of neural networks or alternative multivariate methods. A high speed interface for external memory will be integrated into the platform, to be able to store the O(109) parameters required. The contribution presents the results of our feasibility studies and discusses the details of the envisaged hardware solution.

  8. Development of a coastal drought index using salinity data

    USGS Publications Warehouse

    Conrads, Paul; Darby, Lisa S.

    2017-01-01

    A critical aspect of the uniqueness of coastal drought is the effects on the salinity dynamics of creeks, rivers, and estuaries. The location of the freshwater–saltwater interface along the coast is an important factor in the ecological and socioeconomic dynamics of coastal communities. Salinity is a critical response variable that integrates hydrologic and coastal dynamics including sea level, tides, winds, precipitation, streamflow, and tropical storms. The position of the interface determines the composition of freshwater and saltwater aquatic communities as well as the freshwater availability for water intakes. Many definitions of drought have been proposed, with most describing a decline in precipitation having negative impacts on the water supply. Indices have been developed incorporating data such as rainfall, streamflow, soil moisture, and groundwater levels. These water-availability drought indices were developed for upland areas and may not be ideal for characterizing coastal drought. The availability of real-time and historical salinity datasets provides an opportunity for the development of a salinity-based coastal drought index. An approach similar to the standardized precipitation index (SPI) was modified and applied to salinity data obtained from sites in South Carolina and Georgia. Using the SPI approach, the index becomes a coastal salinity index (CSI) that characterizes coastal salinity conditions with respect to drought periods of higher-saline conditions and wet periods of higher-freshwater conditions. Evaluation of the CSI indicates that it provides additional coastal response information as compared to the SPI and the Palmer hydrologic drought index, and the CSI can be used for different estuary types and for comparison of conditions along coastlines.

  9. ETD in a traveling wave ion guide at tuned Z-spray ion source conditions allows for site-specific hydrogen/deuterium exchange measurements.

    PubMed

    Rand, Kasper D; Pringle, Steven D; Morris, Michael; Engen, John R; Brown, Jeffery M

    2011-10-01

    The recent application of electron transfer dissociation (ETD) to measure the hydrogen exchange of proteins in solution at single-residue resolution (HX-ETD) paves the way for mass spectrometry-based analyses of biomolecular structure at an unprecedented level of detail. The approach requires that activation of polypeptide ions prior to ETD is minimal so as to prevent undesirable gas-phase randomization of the deuterium label from solution (i.e., hydrogen scrambling). Here we explore the use of ETD in a traveling wave ion guide of a quadrupole-time-of-flight (Q-TOF) mass spectrometer with a "Z-spray" type ion source, to measure the deuterium content of individual residues in peptides. We systematically identify key parameters of the Z-spray ion source that contribute to collisional activation and define conditions that allow ETD experiments to be performed in the traveling wave ion guide without gas-phase hydrogen scrambling. We show that ETD and supplemental collisional activation in a subsequent traveling wave ion guide allows for improved extraction of residue-specific deuterium contents in peptides with low charge. Our results demonstrate the feasibility, and illustrate the advantages of performing HX-ETD experiments on a high-resolution Q-TOF instrument equipped with traveling wave ion guides. Determination of parameters of the Z-spray ion source that contribute to ion heating are similarly pertinent to a growing number of MS applications that also rely on an energetically gentle transfer of ions into the gas-phase, such as the analysis of biomolecular structure by native mass spectrometry in combination with gas-phase ion-ion/ion-neutral reactions or ion mobility spectrometry. © American Society for Mass Spectrometry, 2011

  10. Tulsa's IndEx Program. A Business-Led Initiative for Welfare Reform and Economic Development. Connections To Work.

    ERIC Educational Resources Information Center

    Buck, Maria L.

    In 1992, the Metropolitan Tulsa Chamber of Commerce in Oklahoma established a welfare-to-work program called Industrial Exchange, Inc. (IndEx). IndEx provides welfare recipients with a combination of education activities and work experience. By contracting with local companies to perform light manufacturing and packaging work at a central site,…

  11. Single-shot Z(eff) dense plasma diagnostic through simultaneous refraction and attenuation measurements with a Talbot-Lau x-ray moiré deflectometer.

    PubMed

    Valdivia, M P; Stutman, D; Finkenthal, M

    2015-04-01

    The Talbot-Lau x-ray moiré deflectometer is a powerful plasma diagnostic capable of delivering simultaneous refraction and attenuation information through the accurate detection of x-ray phase shift and intensity. The diagnostic can provide the index of refraction n=1-δ+iβ of an object (dense plasma, for example) placed in the x-ray beam by independently measuring both δ and β, which are directly related to the electron density n(e) and the attenuation coefficient μ, respectively. Since δ and β depend on the effective atomic number Z(eff), a map can be obtained from the ratio between phase and absorption images acquired in a single shot. The Talbot-Lau x-ray moiré deflectometer and its corresponding data acquisition and processing are briefly described to illustrate how the above is achieved; Z(eff) values of test objects within the 4-12 range were obtained experimentally through simultaneous refraction and attenuation measurements. We show that Z(eff) mapping of objects does not require previous knowledge of sample length or shape. The determination of Z(eff) from refraction and attenuation measurements with moiré deflectometry could be of high interest to various domains of high energy density research, such as shocked materials and inertial confinement fusion experiments, as well as material science and nondestructive testing.

  12. Single-shot Z eff dense plasma diagnostic through simultaneous refraction and attenuation measurements with a Talbot–Lau x-ray moiré deflectometer

    DOE PAGES

    Valdivia, M. P.; Stutman, D.; Finkenthal, M.

    2015-03-23

    The Talbot–Lau x-ray moiré deflectometer is a powerful plasma diagnostic capable of delivering simultaneous refraction and attenuation information through the accurate detection of x-ray phase shift and intensity. The diagnostic can provide the index of refraction n=1₋δ + iβ of an object (dense plasma, for example) placed in the x-ray beam by independently measuring both δ and β, which are directly related to the electron density n e and the attenuation coefficient μ respectively. Since δ and β depend on the effective atomic number Z eff, a map can be obtained from the ratio between phase and absorption images acquiredmore » in a single shot. The Talbot–Lau x-ray moiré deflectometer and its corresponding data acquisition and processing are briefly described to illustrate how the above is achieved; Z eff values of test objects within the 4₋12 range were obtained experimentally through simultaneous refraction and attenuation measurements. We show that Z eff mapping of objects does not require previous knowledge of sample length or shape. In conclusion, the determination of Z eff from refraction and attenuation measurements with moiré deflectometry could be of high interest to various domains of high energy density research, such as shocked materials and inertial confinement fusion experiments, as well as material science and nondestructive testing.« less

  13. Single-shot Z eff dense plasma diagnostic through simultaneous refraction and attenuation measurements with a Talbot–Lau x-ray moiré deflectometer

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Valdivia, M. P.; Stutman, D.; Finkenthal, M.

    The Talbot–Lau x-ray moiré deflectometer is a powerful plasma diagnostic capable of delivering simultaneous refraction and attenuation information through the accurate detection of x-ray phase shift and intensity. The diagnostic can provide the index of refraction n=1₋δ + iβ of an object (dense plasma, for example) placed in the x-ray beam by independently measuring both δ and β, which are directly related to the electron density n e and the attenuation coefficient μ respectively. Since δ and β depend on the effective atomic number Z eff, a map can be obtained from the ratio between phase and absorption images acquiredmore » in a single shot. The Talbot–Lau x-ray moiré deflectometer and its corresponding data acquisition and processing are briefly described to illustrate how the above is achieved; Z eff values of test objects within the 4₋12 range were obtained experimentally through simultaneous refraction and attenuation measurements. We show that Z eff mapping of objects does not require previous knowledge of sample length or shape. In conclusion, the determination of Z eff from refraction and attenuation measurements with moiré deflectometry could be of high interest to various domains of high energy density research, such as shocked materials and inertial confinement fusion experiments, as well as material science and nondestructive testing.« less

  14. Interferometric measurement of refractive index modification in a single mode microfiber

    NASA Astrophysics Data System (ADS)

    Ahmed, Farid; Ahsani, Vahid; Jun, Martin B. G.

    2017-02-01

    Efficient and cost effective measurement of the refractive index profile in an optical fiber is a significant technical job to design and manufacture in-fiber photonic devices and communication systems. For instance, to design fiber gratings, it is required to estimate the refractive index modulation to be inscribed by the fabrication apparatus such as ultraviolet or infrared lasers. Mach-Zehnder interferometer (MZI) based quantification of refractive index change written in single mode microfiber by femtosecond laser radiation is presented in this study. The MZI is constructed by splicing a microfiber (core diameter: 3.75 μm, cladding diameter: 40 μm) between standard single mode fibers. To measure the RI inscribed by infrared femtosecond laser, 200 μm length of the core within the MZI was scanned with laser radiation. As the higher index was written within 200 μm length of the core, the transmission spectrum of the interferometer displayed a corresponding red shift. The observed spectral shift was used to calculate the amount of refractive index change inscribed by the femtosecond irradiation. For the MZI length of 3.25 mm, and spectral shift of 0.8 nm, the calculated refractive index was found to be 0.00022. The reported results display excellent agreement between theory and experimental findings. Demonstrated method provides simple yet very effective on-site measurement of index change in optical fibers. Since the MZI can be constructed in diverse fiber types, this technique offers flexibility to quantify index change in various optical fibers.

  15. Characterization of Ovine A3Z1 Restriction Properties against Small Ruminant Lentiviruses (SRLVs)

    PubMed Central

    de Pablo-Maiso, Lorena; Glaria, Idoia; Crespo, Helena; Nistal-Villán, Estanislao; Andrésdóttir, Valgerdur; de Andrés, Damián; Amorena, Beatriz

    2017-01-01

    Intrinsic factors of the innate immune system include the apolipoprotein B editing enzyme catalytic polypeptide-like 3 (APOBEC3) protein family. APOBEC3 inhibits replication of different virus families by cytosine deamination of viral DNA and a not fully characterized cytosine deamination-independent mechanism. Sheep are susceptible to small ruminant lentivirus (SRLVs) infection and contain three APOBEC3 genes encoding four proteins (A3Z1, Z2, Z3 and Z2-Z3) with yet not deeply described antiviral properties. Using sheep blood monocytes and in vitro-derived macrophages, we found that A3Z1 expression is associated with lower viral replication in this cellular type. A3Z1 transcripts may also contain spliced variants (A3Z1Tr) lacking the cytidine deaminase motif. A3Z1 exogenous expression in fully permissive fibroblast-like cells restricted SRLVs infection while A3Z1Tr allowed infection. A3Z1Tr was induced after SRLVs infection or stimulation of blood-derived macrophages with interferon gamma (IFN-γ). Interaction between truncated isoform and native A3Z1 protein was detected as well as incorporation of both proteins into virions. A3Z1 and A3Z1Tr interacted with SRLVs Vif, but this interaction was not associated with degradative properties. Similar A3Z1 truncated isoforms were also present in human and monkey cells suggesting a conserved alternative splicing regulation in primates. A3Z1-mediated retroviral restriction could be constrained by different means, including gene expression and specific alternative splicing regulation, leading to truncated protein isoforms lacking a cytidine-deaminase motif. PMID:29149056

  16. Retrospective indexing (RI) - A computer-aided indexing technique

    NASA Technical Reports Server (NTRS)

    Buchan, Ronald L.

    1990-01-01

    An account is given of a method for data base-updating designated 'computer-aided indexing' (CAI) which has been very efficiently implemented at NASA's Scientific and Technical Information Facility by means of retrospective indexing. Novel terms added to the NASA Thesaurus will therefore proceed directly into both the NASA-RECON aerospace information system and its portion of the ESA-Information Retrieval Service, giving users full access to material thus indexed. If a given term appears in the title of a record, it is given special weight. An illustrative graphic representation of the CAI search strategy is presented.

  17. Entomologic index for human risk of Lyme disease.

    PubMed

    Mather, T N; Nicholson, M C; Donnelly, E F; Matyas, B T

    1996-12-01

    An entomologic index based on density estimates of Lyme disease spirochete-infected nymphal deer ticks (lxodes scapularis) was developed to assess human risk of Lyme disease. The authors used a standardized protocol to determine tick density and infection in numerous forested sites in six Rhode Island towns. An entomologic risk index calculated for each town was compared with the number of human Lyme disease cases reported to the Rhode Island State Health Department for the same year. A strong positive relation between entomologic risk index and the Lyme disease case rate for each town suggested that the entomologic index was predictive of Lyme disease risk.

  18. Comparison of index velocity measurements made with a horizontal acoustic Doppler current profiler

    USGS Publications Warehouse

    Jackson, P. Ryan; Johnson, Kevin K.; Duncker, James J.

    2012-01-01

    The State of Illinois' annual withdrawal from Lake Michigan is limited by a U.S. Supreme Court decree, and the U.S. Geological Survey (USGS) is responsible for monitoring flows in the Chicago Sanitary and Ship Canal (CSSC) near Lemont, Illinois as a part of the Lake Michigan Diversion Accounting overseen by the U.S. Army Corps of Engineers, Chicago District. Every 5 years, a technical review committee consisting of practicing engineers and academics is convened to review the U.S. Geological Survey's streamgage practices in the CSSC near Lemont, Illinois. The sixth technical review committee raised a number of questions concerning the flows and streamgage practices in the CSSC near Lemont and this report provides answers to many of those questions. In addition, it is the purpose of this report to examine the index velocity meters in use at Lemont and determine whether the acoustic velocity meter (AVM), which is now the primary index velocity meter, can be replaced by the horizontal acoustic Doppler current profiler (H-ADCP), which is currently the backup meter. Application of the AVM and H-ADCP to index velocity measurements in the CSSC near Lemont, Illinois, has produced good ratings to date. The site is well suited to index velocity measurements in spite of the large range of velocities and highly unsteady flows at the site. Flow variability arises from a range of sources: operation of the waterway through control structures, lockage-generated disturbances, commercial and recreational traffic, industrial withdrawals and discharges, natural inflows, seiches, and storm events. The influences of these factors on the index velocity measurements at Lemont is examined in detail in this report. Results of detailed data comparisons and flow analyses show that use of bank-mounted instrumentation such as the AVM and H-ADCP appears to be the best option for index velocity measurement in the CSSC near Lemont. Comparison of the rating curves for the AVM and H-ADCP demonstrates

  19. Ki67 Proliferation Index as a Tool for Chemotherapy Decisions During and After Neoadjuvant Aromatase Inhibitor Treatment of Breast Cancer: Results From the American College of Surgeons Oncology Group Z1031 Trial (Alliance)

    PubMed Central

    Ellis, Matthew J.; Suman, Vera J.; Hoog, Jeremy; Goncalves, Rodrigo; Sanati, Souzan; Creighton, Chad J.; DeSchryver, Katherine; Crouch, Erika; Brink, Amy; Watson, Mark; Luo, Jingqin; Tao, Yu; Barnes, Michael; Dowsett, Mitchell; Budd, G. Thomas; Winer, Eric; Silverman, Paula; Esserman, Laura; Carey, Lisa; Ma, Cynthia X.; Unzeitig, Gary; Pluard, Timothy; Whitworth, Pat; Babiera, Gildy; Guenther, J. Michael; Dayao, Zoneddy; Ota, David; Leitch, Marilyn; Olson, John A.; Allred, D. Craig; Hunt, Kelly

    2017-01-01

    Purpose To determine the pathologic complete response (pCR) rate in estrogen receptor (ER) –positive primary breast cancer triaged to chemotherapy when the protein encoded by the MKI67 gene (Ki67) level was > 10% after 2 to 4 weeks of neoadjuvant aromatase inhibitor (AI) therapy. A second objective was to examine risk of relapse using the Ki67-based Preoperative Endocrine Prognostic Index (PEPI). Methods The American College of Surgeons Oncology Group (ACOSOG) Z1031A trial enrolled postmenopausal women with stage II or III ER-positive (Allred score, 6 to 8) breast cancer whose treatment was randomly assigned to neoadjuvant AI therapy with anastrozole, exemestane, or letrozole. For the trial ACOSOG Z1031B, the protocol was amended to include a tumor Ki67 determination after 2 to 4 weeks of AI. If the Ki67 was > 10%, patients were switched to neoadjuvant chemotherapy. A pCR rate of > 20% was the predefined efficacy threshold. In patients who completed neoadjuvant AI, stratified Cox modeling was used to assess whether time to recurrence differed by PEPI = 0 score (T1 or T2, N0, Ki67 < 2.7%, ER Allred > 2) versus PEPI > 0 disease. Results Only two of the 35 patients in ACOSOG Z1031B who were switched to neoadjuvant chemotherapy experienced a pCR (5.7%; 95% CI, 0.7% to 19.1%). After 5.5 years of median follow-up, four (3.7%) of the 109 patients with a PEPI = 0 score relapsed versus 49 (14.4%) of 341 of patients with PEPI > 0 (recurrence hazard ratio [PEPI = 0 v PEPI > 0], 0.27; P = .014; 95% CI, 0.092 to 0.764). Conclusion Chemotherapy efficacy was lower than expected in ER-positive tumors exhibiting AI-resistant proliferation. The optimal therapy for these patients should be further investigated. For patients with PEPI = 0 disease, the relapse risk over 5 years was only 3.6% without chemotherapy, supporting the study of adjuvant endocrine monotherapy in this group. These Ki67 and PEPI triage approaches are being definitively studied in the ALTERNATE trial (Alternate

  20. Development of a Coastal Drought Index Using Salinity Data

    NASA Astrophysics Data System (ADS)

    Conrads, P. A.; Darby, L. S.

    2014-12-01

    The freshwater-saltwater interface in surface-water bodies along the coast is an important factor in the ecological and socio-economic dynamics of coastal communities. It influences community composition in freshwater and saltwater ecosystems, determines fisheries spawning habitat, and controls freshwater availability for municipal and industrial water intakes. These dynamics may be affected by coastal drought through changes in Vibrio bacteria impacts on shellfish harvesting and occurrence of wound infection, fish kills, harmful algal blooms, hypoxia, and beach closures. There are many definitions of drought, with most describing a decline in precipitation having negative impacts on water supply and agriculture. Four general types of drought are recognized: hydrological, agricultural, meteorological, and socio-economic. Indices have been developed for these drought types incorporating data such as rainfall, streamflow, soil moisture, groundwater levels, and snow pack. These indices were developed for upland areas and may not be appropriate for characterizing drought in coastal areas. Because of the uniqueness of drought impacts on coastal ecosystems, a need exists to develop a coastal drought index. The availability of real-time and historical salinity datasets provides an opportunity to develop a salinity-based coastal drought index. The challenge of characterizing salinity dynamics in response to drought is excluding responses attributable to occasional saltwater intrusion events. Our approach to develop a coastal drought index modified the Standardized Precipitation Index and applied it to sites in South Carolina and Georgia, USA. Coastal drought indices characterizing 1-, 3-, 6-, 9-, and12-month drought conditions were developed. Evaluation of the coastal drought index indicates that it can be used for different estuary types, for comparison between estuaries, and as an index for wet conditions (high freshwater inflow) in addition to drought conditions.

  1. Anomalous Z' and diboson resonances at the LHC

    NASA Astrophysics Data System (ADS)

    Ismail, Ahmed; Katz, Andrey

    2018-04-01

    We propose novel collider searches which can significantly improve the LHC reach to new gauge bosons Z' with mixed anomalies with the electroweak (EW) gauge group. Such a Z' necessarily acquires a Chern-Simons coupling to the EW gauge bosons and these couplings can drive both exotic Z decays into Z'γ if the new gauge boson is sufficiently light, as well as Z' decays into EW gauge bosons. While the exotic decay rate of the heavy Z into Z'γ is too small to be observed at the LHC, for a light Z', we show the potential of a lepton jet search in association with a photon to probe the rare decay ZZ'γ.

  2. Florida creativity index scores, conservatism, and openness in 268 U.S. regions.

    PubMed

    McCann, Stewart J H

    2011-02-01

    This study assessed whether Florida's Creativity Index (2002) scores for 268 U.S. regions were related to levels of conservatism and openness in the states in which the regions were situated. State conservatism was measured as the percentage voting for Bush in 2000. State openness z scores were taken from a survey of 619,397 residents (Rentfrow, Gosling, & Potter, 2008). Creativity scores correlated negatively with conservatism (r = -.22) and positively with openness (r = .23). Regression showed that the two predictors accounted jointly (7%) and separately for significant variance in the Creativity Index. The findings contribute evidence for the construct validity of Florida's composite Creativity Index and some, albeit moderate to weak, support of the Rentfrow, et al. conclusion that state-aggregated openness reflects the unconventionality, tolerance, and creativity of a state.

  3. Reliability of a Novel CBCT-Based 3D Classification System for Maxillary Canine Impactions in Orthodontics: The KPG Index

    PubMed Central

    Visconti, Luca; Martin, Conchita

    2013-01-01

    The aim of this study was to evaluate both intra- and interoperator reliability of a radiological three-dimensional classification system (KPG index) for the assessment of degree of difficulty for orthodontic treatment of maxillary canine impactions. Cone beam computed tomography (CBCT) scans of fifty impacted canines, obtained using three different scanners (NewTom, Kodak, and Planmeca), were classified using the KPG index by three independent orthodontists. Measurements were repeated one month later. Based on these two sessions, several recommendations on KPG Index scoring were elaborated. After a joint calibration session, these recommendations were explained to nine orthodontists and the two measurement sessions were repeated. There was a moderate intrarater agreement in the precalibration measurement sessions. After the calibration session, both intra- and interrater agreement were almost perfect. Indexes assessed with Kodak Dental Imaging 3D module software showed a better reliability in z-axis values, whereas indexes assessed with Planmeca Romexis software showed a better reliability in x- and y-axis values. No differences were found between the CBCT scanners used. Taken together, these findings indicate that the application of the instructions elaborated during this study improved KPG index reliability, which was nevertheless variously influenced by the use of different software for images evaluation. PMID:24235889

  4. Bats: Body mass index, forearm mass index, blood glucose levels and SLC2A2 genes for diabetes

    PubMed Central

    Meng, Fanxing; Zhu, Lei; Huang, Wenjie; Irwin, David M.; Zhang, Shuyi

    2016-01-01

    Bats have an unusually large volume of endocrine tissue, with a large population of beta cells, and an elevated sensitivity to glucose and insulin. This makes them excellent animal models for studying diabetes mellitus. We evaluated bats as models for diabetes in terms of lifestyle and genetic factors. For lifestyle factors, we generated data sets of 149 body mass index (BMI) and 860 forearm mass index (FMI) measurements for different species of bats. Both showed negative inter-species correlations with blood glucose levels in sixteen bats examined. The negative inter-species correlations may reflect adaptation of a small insectivorous ancestor to a larger frugivore. We identified an 11 bp deletion in the proximal promoter of SLC2A2 that we predicted would disrupt binding sites for the transcription repressor ZNF354C. In frugivorous bats this could explain the relatively high expression of this gene, resulting in a better capacity to absorb glucose and decrease blood glucose levels. PMID:27439361

  5. Reconstitution of Contractile FtsZ Rings in Liposomes

    PubMed Central

    Osawa, Masaki; Anderson, David E.; Erickson, Harold P.

    2009-01-01

    FtsZ is a tubulin homolog and the major cytoskeletal protein in bacterial cell division. It assembles into the Z ring, which contains FtsZ and a dozen other division proteins, and constricts to divide the cell. We have constructed a membrane-targeted FtsZ (FtsZ-mts) by splicing an amphipathic helix to its C terminus. When mixed with lipid vesicles, FtsZ-mts was incorporated into the interior of some tubular vesicles. There it formed multiple Z rings that could move laterally in both directions along the length of the liposome and coalesce into brighter Z rings. Brighter Z rings produced visible constrictions in the liposome, suggesting that FtsZ itself can assemble the Z ring and generate a force. No other proteins were needed for assembly and force generation. PMID:18420899

  6. The highly conserved MraZ protein is a transcriptional regulator in Escherichia coli

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Eraso, Jesus M.; Markillie, Lye Meng; Mitchell, Hugh D.

    2014-05-05

    The mraZ and mraW genes are highly conserved in bacteria, both in sequence and location at the head of the division and cell wall (dcw) gene cluster. Although MraZ has structural similarity to the AbrB transition state regulator and the MazE antitoxin, and MraW is known to methylate ribosomal RNA, mraZ and mraW null mutants have no detectable growth phenotype in any species tested to date, hampering progress in understanding their physiological role. Here we show that overproduction of Escherichia coli MraZ perturbs cell division and the cell envelope, is more lethal at high levels or in minimal growth medium,more » and that MraW antagonizes these effects. MraZGFP localizes to the nucleoid, suggesting that it binds DNA. Indeed, purified MraZ directly binds a region upstream from its own promoter containing three direct repeats to regulate its own expression and that of downstream cell division and cell wall genes. MraZ-LacZ fusions are repressed by excess MraZ but not when DNA binding by MraZ is inhibited. RNAseq analysis indicates that MraZ is a global transcriptional regulator with numerous targets in addition to dcw genes. One of these targets, mioC, is directly bound by MraZ in a region with three direct repeats.« less

  7. Mineralizable soil nitrogen as an index of nitrogen availability to forest trees

    Treesearch

    Robert F. Powers

    1980-01-01

    Soil N mineralized during 14-day anaerobic incubation at 30°C is evaluated as an index of forest soil fertility and site productivity. Mineralizable soil N determined under standard conditions correlates significantly with N mineralized anaerobically for 6 months in the field, with site index and yield potential of Pinus ponderosa L....

  8. Negative index effects from a homogeneous positive index prism

    NASA Astrophysics Data System (ADS)

    Marcus, Sherman W.; Epstein, Ariel

    2017-12-01

    Cellular structured negative index metamaterials in the form of a right triangular prism have often been tested by observing the refraction of a beam across the prism hypotenuse which is serrated in order to conform to the cell walls. We show that not only can this negative index effect be obtained from a homogeneous dielectric prism having a positive index of refraction, but in addition, for sampling at the walls of the cellular structure, the phase in the material has the illusory appearance of moving in a negative direction. Although many previous reports relied on refraction direction and phase velocity of prism structures to verify negative index design, our investigation indicates that to unambiguously demonstrate material negativity additional empirical evidence is required.

  9. FtsZ Placement in Nucleoid-Free Bacteria

    PubMed Central

    Pazos, Manuel; Casanova, Mercedes; Palacios, Pilar; Margolin, William; Natale, Paolo; Vicente, Miguel

    2014-01-01

    We describe the placement of the cytoplasmic FtsZ protein, an essential component of the division septum, in nucleoid-free Escherichia coli maxicells. The absence of the nucleoid is accompanied in maxicells by degradation of the SlmA protein. This protein, together with the nucleoid, prevents the placement of the septum in the regions occupied by the chromosome by a mechanism called nucleoid occlusion (NO). A second septum placement mechanism, the MinCDE system (Min) involving a pole-to-pole oscillation of three proteins, nonetheless remains active in maxicells. Both Min and NO act on the polymerization of FtsZ, preventing its assembly into an FtsZ-ring except at midcell. Our results show that even in the total absence of NO, Min oscillations can direct placement of FtsZ in maxicells. Deletion of the FtsZ carboxyl terminal domain (FtsZ*), a central hub that receives signals from a variety of proteins including MinC, FtsA and ZipA, produces a Min-insensitive form of FtsZ unable to interact with the membrane-anchoring FtsA and ZipA proteins. This protein produces a totally disorganized pattern of FtsZ localization inside the maxicell cytoplasm. In contrast, FtsZ*-VM, an artificially cytoplasmic membrane-anchored variant of FtsZ*, forms helical or repetitive ring structures distributed along the entire length of maxicells even in the absence of NO. These results show that membrane anchoring is needed to organize FtsZ into rings and underscore the role of the C-terminal hub of FtsZ for their correct placement. PMID:24638110

  10. FtsZ placement in nucleoid-free bacteria.

    PubMed

    Pazos, Manuel; Casanova, Mercedes; Palacios, Pilar; Margolin, William; Natale, Paolo; Vicente, Miguel

    2014-01-01

    We describe the placement of the cytoplasmic FtsZ protein, an essential component of the division septum, in nucleoid-free Escherichia coli maxicells. The absence of the nucleoid is accompanied in maxicells by degradation of the SlmA protein. This protein, together with the nucleoid, prevents the placement of the septum in the regions occupied by the chromosome by a mechanism called nucleoid occlusion (NO). A second septum placement mechanism, the MinCDE system (Min) involving a pole-to-pole oscillation of three proteins, nonetheless remains active in maxicells. Both Min and NO act on the polymerization of FtsZ, preventing its assembly into an FtsZ-ring except at midcell. Our results show that even in the total absence of NO, Min oscillations can direct placement of FtsZ in maxicells. Deletion of the FtsZ carboxyl terminal domain (FtsZ*), a central hub that receives signals from a variety of proteins including MinC, FtsA and ZipA, produces a Min-insensitive form of FtsZ unable to interact with the membrane-anchoring FtsA and ZipA proteins. This protein produces a totally disorganized pattern of FtsZ localization inside the maxicell cytoplasm. In contrast, FtsZ*-VM, an artificially cytoplasmic membrane-anchored variant of FtsZ*, forms helical or repetitive ring structures distributed along the entire length of maxicells even in the absence of NO. These results show that membrane anchoring is needed to organize FtsZ into rings and underscore the role of the C-terminal hub of FtsZ for their correct placement.

  11. Z-portal dark matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Arcadi, Giorgio; Mambrini, Yann; Richard, Francois, E-mail: giorgio.arcadi@th.u-psud.fr, E-mail: yann.mambrini@th.u-psud.fr, E-mail: richard@lal.in2p3.fr

    2015-03-01

    We propose to generalize the extensions of the Standard Model where the Z boson serves as a mediator between the Standard Model sector and the dark sector χ. We show that, like in the Higgs portal case, the combined constraints from the recent direct searches restrict severely the nature of the coupling of the dark matter to the Z boson and set a limit m{sub χ} ∼> 200 GeV (except in a very narrow region around the Z-pole region). Using complementarity between spin dependent, spin independent and FERMI limits, we predict the nature of this coupling, more specifically the axial/vectorial ratio thatmore » respects a thermal dark matter coupled through a Z-portal while not being excluded by the current observations. We also show that the next generation of experiments of the type LZ or XENON1T will test Z-portal scenario for dark matter mass up to 2 TeV . The condition of a thermal dark matter naturally predicts the spin-dependent scattering cross section on the neutron to be σ{sup SD}{sub χn} ≅ 10{sup −40} cm{sup 2}, which then becomes a clear prediction of the model and a signature testable in the near future experiments.« less

  12. Silencing Inhibits Cre-Mediated Recombination of the Z/AP and Z/EG Reporters in Adult Cells

    PubMed Central

    Long, Michael A.; Rossi, Fabio M. V.

    2009-01-01

    Background The Cre-loxP system has been used to enable tissue specific activation, inactivation and mutation of many genes in vivo and has thereby greatly facilitated the genetic dissection of several cellular and developmental processes. In such studies, Cre-reporter strains, which carry a Cre-activated marker gene, are frequently utilized to validate the expression profile of Cre transgenes, to act as a surrogate marker for excision of a second allele, and to irreversibly label cells for lineage tracing experiments. Principal Findings We have studied three commonly used Cre-reporter strains, Z/AP, Z/EG and R26R-EYFP and have demonstrated that although each reporter can be reliably activated by Cre during early development, exposure to Cre in adult hematopoietic cells results in a much lower frequency of marker-positive cells in the Z/AP or Z/EG strains than in the R26R-EYFP strain. In marker negative cells derived from the Z/AP and Z/EG strains, the transgenic promoter is methylated and Cre-mediated recombination of the locus is inhibited. Conclusions These results show that the efficiency of Cre-mediated recombination is not only dependent on the genomic context of a given loxP-flanked sequence, but also on stochastic epigenetic mechanisms underlying transgene variegation. Furthermore, our data highlights the potential shortcomings of utilizing the Z/AP and Z/EG reporters as surrogate markers of excision or in lineage tracing experiments. PMID:19415111

  13. Silencing inhibits Cre-mediated recombination of the Z/AP and Z/EG reporters in adult cells.

    PubMed

    Long, Michael A; Rossi, Fabio M V

    2009-01-01

    The Cre-loxP system has been used to enable tissue specific activation, inactivation and mutation of many genes in vivo and has thereby greatly facilitated the genetic dissection of several cellular and developmental processes. In such studies, Cre-reporter strains, which carry a Cre-activated marker gene, are frequently utilized to validate the expression profile of Cre transgenes, to act as a surrogate marker for excision of a second allele, and to irreversibly label cells for lineage tracing experiments. We have studied three commonly used Cre-reporter strains, Z/AP, Z/EG and R26R-EYFP and have demonstrated that although each reporter can be reliably activated by Cre during early development, exposure to Cre in adult hematopoietic cells results in a much lower frequency of marker-positive cells in the Z/AP or Z/EG strains than in the R26R-EYFP strain. In marker negative cells derived from the Z/AP and Z/EG strains, the transgenic promoter is methylated and Cre-mediated recombination of the locus is inhibited. These results show that the efficiency of Cre-mediated recombination is not only dependent on the genomic context of a given loxP-flanked sequence, but also on stochastic epigenetic mechanisms underlying transgene variegation. Furthermore, our data highlights the potential shortcomings of utilizing the Z/AP and Z/EG reporters as surrogate markers of excision or in lineage tracing experiments.

  14. Site-Specific Antibody Labeling by Covalent Photoconjugation of Z Domains Functionalized for Alkyne-Azide Cycloaddition Reactions.

    PubMed

    Perols, Anna; Arcos Famme, Melina; Eriksson Karlström, Amelie

    2015-11-01

    Antibodies are extensively used in research, diagnostics, and therapy, and for many applications the antibodies need to be labeled. Labeling is typically performed by using amine-reactive probes that target surface-exposed lysine residues, resulting in heterogeneously labeled antibodies. An alternative labeling strategy is based on the immunoglobulin G (IgG)-binding protein domain Z, which binds to the Fc region of IgG. Introducing the photoactivable amino acid benzoylphenylalanine (BPA) into the Z domain makes it possible for a covalent bond to be be formed between the Z domain and the antibody on UV irradiation, to produce a site-specifically labeled product. Z32 BPA was synthesized by solid-phase peptide synthesis and further functionalized to give alkyne-Z32 BPA and azide-Z32 BPA for Cu(I) -catalyzed cycloaddition, as well as DBCO-Z32 BPA for Cu-free strain-promoted cycloaddition. The Z32 BPA variants were conjugated to the human IgG1 antibody trastuzumab and site-specifically labeled with biotin or fluorescein. The fluorescently labeled trastuzumab showed specific staining of the membranes of HER2-expressing cells in immunofluorescence microscopy. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. Cosmic Star Formation: A Simple Model of the SFRD(z)

    NASA Astrophysics Data System (ADS)

    Chiosi, Cesare; Sciarratta, Mauro; D’Onofrio, Mauro; Chiosi, Emanuela; Brotto, Francesca; De Michele, Rosaria; Politino, Valeria

    2017-12-01

    We investigate the evolution of the cosmic star formation rate density (SFRD) from redshift z = 20 to z = 0 and compare it with the observational one by Madau and Dickinson derived from recent compilations of ultraviolet (UV) and infrared (IR) data. The theoretical SFRD(z) and its evolution are obtained using a simple model that folds together the star formation histories of prototype galaxies that are designed to represent real objects of different morphological type along the Hubble sequence and the hierarchical growing of structures under the action of gravity from small perturbations to large-scale objects in Λ-CDM cosmogony, i.e., the number density of dark matter halos N(M,z). Although the overall model is very simple and easy to set up, it provides results that mimic results obtained from highly complex large-scale N-body simulations well. The simplicity of our approach allows us to test different assumptions for the star formation law in galaxies, the effects of energy feedback from stars to interstellar gas, the efficiency of galactic winds, and also the effect of N(M,z). The result of our analysis is that in the framework of the hierarchical assembly of galaxies, the so-called time-delayed star formation under plain assumptions mainly for the energy feedback and galactic winds can reproduce the observational SFRD(z).

  16. Stability of infant and child feeding index over time and its association with nutritional status of HIV exposed infants in Sidama Zone, Southern Ethiopia: a longitudinal study.

    PubMed

    Haile, Demewoz; Belachew, Tefera; Berhanu, Getenesh; Setegn, Tesfaye; Biadgilign, Sibhatu

    2014-12-01

    Even though many studies showed that infant and child feeding index has a statistically significant association with nutritional status, there is paucity of studies on stability of infant and child feeding index over time and its association with nutritional status of HIV exposed infants. This study aimed to investigate the stability of infant and child feeding index over time that is developed based on the current recommendations and its association with nutritional status of HIV exposed infants in Sidama Zone, Southern Ethiopia. A panel study design was conducted in health institutions in Sidama Zone from February to July, 2012. Three repeated measurements of data were collected from each HIV exposed infant aged 6-17 months over the 6 month follow-up period approximately per 2 month interval. The cross-sectional index was found stable overtime with the repeatability coefficient of 0.802 which differed significantly from zero (95% CI: 0.75-0.85). A longitudinal infant and child feeding index (L-ICFI) has a statistically significant association with length for age Z scores (LAZ) and weight for age Z scores (WAZ) at visit three (β=0.262, p=0.007; β=0.226, p=0.017), respectively. But the longitudinal index has no statistically significant association with WLZ score (p=0.552). There was no significant difference in change of LAZ and WAZ over time between L-ICFI tertiles for both female and male HIV exposed infants. The index is stable overtime at individual level even though one third of the index components were not stable. The L-CFI was associated with LAZ and WAZ but not with WLZ. However there was no significant difference in change of HAZ and WAZ over time between L-ICFI tertiles for both female and male HIV exposed infants. Copyright © 2014 Elsevier Ltd. All rights reserved.

  17. Evidence for strong evolution in galaxy environmental quenching efficiency between z = 1.6 and z = 0.9

    NASA Astrophysics Data System (ADS)

    Nantais, Julie B.; Muzzin, Adam; van der Burg, Remco F. J.; Wilson, Gillian; Lidman, Chris; Foltz, Ryan; DeGroot, Andrew; Noble, Allison; Cooper, Michael C.; Demarco, Ricardo

    2017-02-01

    We analyse the evolution of environmental quenching efficiency, the fraction of quenched cluster galaxies which would be star forming if they were in the field, as a function of redshift in 14 spectroscopically confirmed galaxy clusters with 0.87 < z < 1.63 from the Spitzer Adaptation of the Red-Sequence Cluster Survey. The clusters are the richest in the survey at each redshift. Passive fractions rise from 42_{-13}^{+10} per cent at z ˜ 1.6 to 80_{-9}^{+12} per cent at z ˜ 1.3 and 88_{-3}^{+4} per cent at z < 1.1, outpacing the change in passive fraction in the field. Environmental quenching efficiency rises dramatically from 16_{-19}^{+15} per cent at z ˜ 1.6 to 62_{-15}^{+21} per cent at z ˜ 1.3 and 73_{-7}^{+8} per cent at z ≲ 1.1. This work is the first to show direct observational evidence for a rapid increase in the strength of environmental quenching in galaxy clusters at z ˜ 1.5, where simulations show cluster-mass haloes undergo non-linear collapse and virialization.

  18. The diverse evolutionary paths of simulated high-z massive, compact galaxies to z = 0

    NASA Astrophysics Data System (ADS)

    Wellons, Sarah; Torrey, Paul; Ma, Chung-Pei; Rodriguez-Gomez, Vicente; Pillepich, Annalisa; Nelson, Dylan; Genel, Shy; Vogelsberger, Mark; Hernquist, Lars

    2016-02-01

    Massive quiescent galaxies have much smaller physical sizes at high redshift than today. The strong evolution of galaxy size may be caused by progenitor bias, major and minor mergers, adiabatic expansion, and/or renewed star formation, but it is difficult to test these theories observationally. Herein, we select a sample of 35 massive, compact galaxies (M* = 1-3 × 1011 M⊙, M*/R1.5 > 1010.5 M⊙/kpc1.5) at z = 2 in the cosmological hydrodynamical simulation Illustris and trace them forwards to z = 0 to uncover their evolution and identify their descendants. By z = 0, the original factor of 3 difference in stellar mass spreads to a factor of 20. The dark matter halo masses similarly spread from a factor of 5 to 40. The galaxies' evolutionary paths are diverse: about half acquire an ex situ envelope and are the core of a more massive descendant, a third survive undisturbed and gain very little mass, 15 per cent are consumed in a merger with a more massive galaxy, and a small remainder are thoroughly mixed by major mergers. The galaxies grow in size as well as mass, and only ˜10 per cent remain compact by z = 0. The majority of the size growth is driven by the acquisition of ex situ mass. The most massive galaxies at z = 0 are the most likely to have compact progenitors, but this trend possesses significant dispersion which precludes a direct linkage to compact galaxies at z = 2. The compact galaxies' merger rates are influenced by their z = 2 environments, so that isolated or satellite compact galaxies (which are protected from mergers) are the most likely to survive to the present day.

  19. Correction of the bilateral question mark ear deformity using double-opposing z-plasty and a chondrocutaneous flap.

    PubMed

    Bastidas, Nicholas; Taylor, Jesse A

    2013-03-01

    To describe an alternative technique for correcting a rare and complex ear deformity. The question mark ear deformity has been described as a congenital cleft between the helix and the lobule in addition to a prominent ear. Here we describe a novel technique using double-opposing Z-plasty and a chondrocutaneous flap to correct the deformity without significant reduction in auricle height or creation of a donor-site defect. An anterior/posterior double-opposing Z-plasty and a superiorly based chondrocutaneous flap were designed at the level of the cleft. Flaps were raised full thickness, and Mustarde and Furnas sutures were placed to reduce the prominence. The flaps were then transposed and reapproximated. Of note, all anterior and posterior skin flaps were used in the repair to minimize diminution of ear height. Pre- and postoperative measurements and photographs of the ears were taken. Postoperatively, all flaps were viable, and there was no evidence of skin necrosis. The total length of the left ear was reduced by only 3 mm (53 to 50 mm), and the right ear was reduced by 1 mm (52 to 51 mm). The patient's pain was successfully managed as an outpatient, and there were no infectious complications. The resultant scars healed aesthetically and are minimally visible. The patient and her parents are satisfied with the results. Our technique addresses all components of the question mark ear deformity and does not create a visible donor-site deformity.

  20. Treatment of patella baja by a modified Z-plasty.

    PubMed

    Guido, Wierer; Christian, Hoser; Elmar, Herbst; Elisabeth, Abermann; Christian, Fink

    2016-09-01

    The purpose of this study was to evaluate the efficiency of a modified Z-plasty for patellar tendon lengthening for the treatment of patella baja. Rather than adapting only two tendon reins according to the conventional Z-plasty method, the modified Z-plasty provides four reins to enable multifold overlapping of the tendon tissue. Between 2010 and 2012, a modified Z-plasty procedure was performed in four patients suffering from patella baja. Physical examinations and standardized scoring instruments served as the evaluation measures. The median preoperative CD ratio of 0.53 (range 0.43-0.62) was corrected to 1.03 (range 1-1.06) after a median follow-up of 34 months (range 23-41 months). The median preoperative flexion of 108° (range 80-135°) improved to 143° (range 110-145°) compared with the flexion of 145° (range 140-145°) of the unaffected knee. No patients showed any signs of extension lag. The median Lysholm score improved from 49 (range 22-80) to 91 (range 67-95), and the Tegner activity level improved from 2 (range 0-6) to 6 (range 2-6). The median VAS status for pain decreased from an average of 8.5 (range 4-10) to 1 (range 0-2). No complications were observed. The modified Z-plasty procedure is a valuable technique for the treatment of patella baja, especially if allografts are not available. This procedure allowed for early mobilization and achieved excellent clinical results. IV.

  1. Photometric variability in FU Ori and Z CMa as observed by MOST

    NASA Astrophysics Data System (ADS)

    Siwak, Michal; Rucinski, Slavek M.; Matthews, Jaymie M.; Kuschnig, Rainer; Guenther, David B.; Moffat, Anthony F. J.; Rowe, Jason F.; Sasselov, Dimitar; Weiss, Werner W.

    2013-06-01

    Photometric observations obtained by the MOST satellite were used to characterize optical small-scale variability of the young stars FU Ori and Z CMa. Wavelet analysis for FU Ori reveals the possible existence of several 2-9 d quasi-periodic features occurring nearly simultaneously; they may be interpreted as plasma parcels or other localized disc heterogeneities revolving at different Keplerian radii in the accretion disc. Their periods may shorten slowly which may be due to spiralling in of individual parcels towards the inner disc radius, estimated at 4.8 ± 0.2 R⊙. Analysis of additional multicolour data confirms the previously obtained relation between variations in the B - V colour index and the V magnitude. In contrast to the FU Ori results, the oscillation spectrum of Z CMa does not reveal any periodicities with the wavelet spectrum possibly dominated by outburst of the Herbig Be component.

  2. Association of parental body mass index before pregnancy on infant growth and body composition: Evidence from a pregnancy cohort study in Malaysia.

    PubMed

    Zalbahar, Nurzalinda; Jan Mohamed, Hamid Jan B; Loy, See Ling; Najman, Jake; McIntyre, Harold David; Mamun, Abdullah

    2016-09-01

    Parental body mass index (BMI) is strongly linked with the development of offspring overweight and obesity. However, there are a limited number of studies focusing on the association of parental body mass index before pregnancy on offspring growth and body composition in early life, particularly in developing countries. Data from the University Sains Malaysia (USM) Pregnancy Cohort which consists of 153 mother-offspring pairs were used. Data were collected using interview-administered questionnaires and anthropometric measurements were also obtained. Multiple linear regression and generalised equation estimation (GEE) were used to examine the direction and impact of the association between parental BMI and child growth and body composition (weight for age, height for age, body mass index for age, weight for height and fat mass at age 2m, 6m, and 12m). Potential confounders, including validated measures of maternal diets and physical activity during pregnancy, were considered. Of 153 parents, one-quarter of the mothers and 42.2% of the fathers, respectively, were overweight or obese before pregnancy. A significant association was found between maternal BMI and child's weight for height z-score (WHZ) and body mass index for age z-score (BAZ). Having high pre-pregnancy BMI may increase BMI and WAZ of offspring in early life. Findings from this study emphasise the importance of monitoring maternal weight status, particularly before and during pregnancy and early life of offspring among Malaysians. Copyright © 2015 Asia Oceania Association for the Study of Obesity. Published by Elsevier Ltd. All rights reserved.

  3. The structural, electronic, magnetic and optical properties of the half-metallic binary alloys ZCl3 (Z=Be, Mg, Ca, Sr): A first-principles study

    NASA Astrophysics Data System (ADS)

    Song, Jun-Tao; Zhang, Jian-Min

    2018-06-01

    The investigations of the electronic and magnetic properties show the binary Heusler alloys ZCl3 (Z = Be, Mg, Ca, Sr) are half-metallic (HM) ferromagnets with an integer magnetic moment (Mt) of 1 μB /f.u.. The alloy BeCl3 is thermodynamic meta-stable, while other alloys are thermodynamic stable according to their cohesive energies and formation energies. Moreover, wide HM regions for alloys ZCl3 (Z = Be, Mg, Ca, Sr) show their HM characters are robust when the lattices are expanded or compressed under uniform and tetragonal strains. Finally, some optical properties are analyzed in detail, such as the dielectric function, the absorption coefficient, the refractive index and the extinction coefficient.

  4. A gamma-ray burst at a redshift of z approximately 8.2.

    PubMed

    Tanvir, N R; Fox, D B; Levan, A J; Berger, E; Wiersema, K; Fynbo, J P U; Cucchiara, A; Krühler, T; Gehrels, N; Bloom, J S; Greiner, J; Evans, P A; Rol, E; Olivares, F; Hjorth, J; Jakobsson, P; Farihi, J; Willingale, R; Starling, R L C; Cenko, S B; Perley, D; Maund, J R; Duke, J; Wijers, R A M J; Adamson, A J; Allan, A; Bremer, M N; Burrows, D N; Castro-Tirado, A J; Cavanagh, B; de Ugarte Postigo, A; Dopita, M A; Fatkhullin, T A; Fruchter, A S; Foley, R J; Gorosabel, J; Kennea, J; Kerr, T; Klose, S; Krimm, H A; Komarova, V N; Kulkarni, S R; Moskvitin, A S; Mundell, C G; Naylor, T; Page, K; Penprase, B E; Perri, M; Podsiadlowski, P; Roth, K; Rutledge, R E; Sakamoto, T; Schady, P; Schmidt, B P; Soderberg, A M; Sollerman, J; Stephens, A W; Stratta, G; Ukwatta, T N; Watson, D; Westra, E; Wold, T; Wolf, C

    2009-10-29

    Long-duration gamma-ray bursts (GRBs) are thought to result from the explosions of certain massive stars, and some are bright enough that they should be observable out to redshifts of z > 20 using current technology. Hitherto, the highest redshift measured for any object was z = 6.96, for a Lyman-alpha emitting galaxy. Here we report that GRB 090423 lies at a redshift of z approximately 8.2, implying that massive stars were being produced and dying as GRBs approximately 630 Myr after the Big Bang. The burst also pinpoints the location of its host galaxy.

  5. Top-quark loop corrections in Z+jet and Z + 2 jet production

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Campbell, John M.; Keith Ellis, R.

    2017-01-01

    The sophistication of current predictions formore » $Z+$jet production at hadron colliders necessitates a re-evaluation of any approximations inherent in the theoretical calculations. In this paper we address one such issue, the inclusion of mass effects in top-quark loops. We ameliorate an existing calculation of $Z+1$~jet and $Z+2$~jet production by presenting exact analytic formulae for amplitudes containing top-quark loops that enter at next-to-leading order in QCD. Although approximations based on an expansion in powers of $$1/m_t^2$$ can lead to poor high-energy behavior, an exact treatment of top-quark loops demonstrates that their effect is small and has limited phenomenological interest.« less

  6. The Z1 truss is transported to Launch Pad 39A

    NASA Technical Reports Server (NTRS)

    2000-01-01

    Before dawn, the payload canister (left) with the Integrated Truss Structure Z1 moves slowly up the crawlerway ramp on Launch Pad 39A toward Space Shuttle Discovery in the background. The canister will be lifted up the Rotating Service Structure to the Payload Changeout Room where the Z1 will be removed and transferred to Discovery's payload bay. The Z1 truss is the first of 10 that will become the backbone of the International Space Station, eventually stretching the length of a football field. Along with its companion payload, the third Pressurized Mating Adapter, the Z1 is scheduled to be launched aboard Discovery Oct. 5 at 9:38 p.m. EDT.

  7. The Z1 truss is transported to Launch Pad 39A

    NASA Technical Reports Server (NTRS)

    2000-01-01

    At Launch Pad 39A, the payload canister with the Integrated Truss Structure Z1 inside arrives at the spot under the Rotating Service Structure where the canister can be lifted to the Payload Changeout Room. There the Z1 truss will be removed and later transferred to Space Shuttle Discovery's payload bay. Discovery is at right, sitting atop the Mobile Launcher Platform. The Z1 truss is the first of 10 that will become the backbone of the International Space Station, eventually stretching the length of a football field. Along with its companion payload, the third Pressurized Mating Adapter, the Z1 is scheduled to be launched aboard Discovery Oct. 5 at 9:38 p.m. EDT.

  8. The Z1 truss is transported to Launch Pad 39A

    NASA Technical Reports Server (NTRS)

    2000-01-01

    At Launch Pad 39A, workers attach umbilical hoses onto the payload canister with the Integrated Truss Structure Z1 inside. The hoses will maintain the environmentally controlled environment while the canister is lifted up the Rotating Service Structure to the Payload Changeout Room. There the Z1 truss will be removed and later transferred to Space Shuttle Discovery's payload bay. The Z1 truss is the first of 10 that will become the backbone of the International Space Station, eventually stretching the length of a football field. Along with its companion payload, the third Pressurized Mating Adapter, the Z1 is scheduled to be launched aboard Discovery Oct. 5 at 9:38 p.m. EDT.

  9. A neural network z-vertex trigger for Belle II

    NASA Astrophysics Data System (ADS)

    Neuhaus, S.; Skambraks, S.; Abudinen, F.; Chen, Y.; Feindt, M.; Frühwirth, R.; Heck, M.; Kiesling, C.; Knoll, A.; Paul, S.; Schieck, J.

    2015-05-01

    We present the concept of a track trigger for the Belle II experiment, based on a neural network approach, that is able to reconstruct the z (longitudinal) position of the event vertex within the latency of the first level trigger. The trigger will thus be able to suppress a large fraction of the dominating background from events outside of the interaction region. The trigger uses the drift time information of the hits from the Central Drift Chamber (CDC) of Belle II within narrow cones in polar and azimuthal angle as well as in transverse momentum (sectors), and estimates the z-vertex without explicit track reconstruction. The preprocessing for the track trigger is based on the track information provided by the standard CDC trigger. It takes input from the 2D (r — φ) track finder, adds information from the stereo wires of the CDC, and finds the appropriate sectors in the CDC for each track in a given event. Within each sector, the z-vertex of the associated track is estimated by a specialized neural network, with a continuous output corresponding to the scaled z-vertex. The input values for the neural network are calculated from the wire hits of the CDC.

  10. Solving a discrete model of the lac operon using Z3

    NASA Astrophysics Data System (ADS)

    Gutierrez, Natalia A.

    2014-05-01

    A discrete model for the Lcac Operon is solved using the SMT-solver Z3. Traditionally the Lac Operon is formulated in a continuous math model. This model is a system of ordinary differential equations. Here, it was considerated as a discrete model, based on a Boolean red. The biological problem of Lac Operon is enunciated as a problem of Boolean satisfiability, and it is solved using an STM-solver named Z3. Z3 is a powerful solver that allows understanding the basic dynamic of the Lac Operon in an easier and more efficient way. The multi-stability of the Lac Operon can be easily computed with Z3. The code that solves the Boolean red can be written in Python language or SMT-Lib language. Both languages were used in local version of the program as online version of Z3. For future investigations it is proposed to solve the Boolean red of Lac Operon using others SMT-solvers as cvc4, alt-ergo, mathsat and yices.

  11. Charge Transport and Thermoelectric Properties of (Nd1- z Yb z ) y Fe4- x Co x Sb12 Skutterudites

    NASA Astrophysics Data System (ADS)

    Shin, Dong-Kil; Jang, Kyung-Wook; Choi, Soon-Mok; Lee, Soonil; Seo, Won-Seon; Kim, Il-Ho

    2018-06-01

    Partially double-filled (Nd1- z Yb z ) y Fe4- x Co x Sb12 ( z = 0.25, 0.75, y = 0.8, and x = 0, 0.5, 1.0) skutterudites were prepared by encapsulated melting, annealing, and hot pressing, and the effects of Nd/Yb partial double filling and Co charge compensation on the microstructure, charge transport, and thermoelectric properties were investigated. All the specimens were transformed to the skutterudite phase together with a few secondary phases such as FeSb2, but FeSb2 formation was suppressed on increasing Co content. Nd and Yb were successfully double-filled in the voids of the skutterudite lattice and Co was well substituted at Fe sites, as indicated by changes in the lattice constant with Nd/Yb filling and Fe/Co substitution. All the specimens showed p-type conduction and exhibited degenerate semiconductor characteristics at temperatures from 323 K to 823 K, and the charge transport properties depended on the filling ratio of Nd and Yb because of the difference between the valencies of Nd and Yb. The electrical conductivity decreased and the Seebeck coefficient increased owing to a decrease in the carrier concentration with increasing Co content. The lattice thermal conductivity decreased because phonon scattering was enhanced by Nd and Yb partial double filling, but partially double-filled specimens did not exhibit a further significant reduction in the lattice thermal conductivity compared with the completely double-filled specimens. A maximum ZT of 0.83 was obtained for (Nd0.75Yb0.25)0.8Fe3CoSb12 at 723 K.

  12. Synthesis of 13(R)-Hydroxy-7Z,10Z,13R,14E,16Z,19Z Docosapentaenoic Acid (13R-HDPA) and Its Biosynthetic Conversion to the 13-Series Resolvins

    PubMed Central

    2016-01-01

    Specialized pro-resolving lipid mediators are biosynthesized during the resolution phase of acute inflammation from n-3 polyunsaturated fatty acids. Recently, the isolation and identification of the four novel mediators denoted 13-series resolvins, namely, RvT1 (1), RvT2 (2), RvT3 (3) and RvT4 (4), were reported, which showed potent bioactions characteristic for specialized pro-resolving lipid mediators. Herein, based on results from LC/MS-MS metabololipidomics and the stereoselective synthesis of 13(R)-hydroxy-7Z,10Z,13R,14E,16Z,19Z docosapentaenoic acid (13R-HDPA, 5), we provide direct evidence that the four novel mediators 1–4 are all biosynthesized from the pivotal intermediate 5. The UV and LC/MS-MS results from synthetic 13R-HDPA (5) matched those from endogenously and biosynthetically produced material obtained from in vivo infectious exudates, endothelial cells, and human recombinant COX-2 enzyme. Stereochemically pure 5 was obtained with the use of a chiral pool starting material that installed the configuration at the C-13 atom as R. Two stereoselective Z-Wittig reactions and two Z-selective reductions of internal alkynes afforded the geometrically pure alkene moieties in 5. Incubation of 5 with isolated human neutrophils gave all four RvTs. The results presented herein provide new knowledge on the biosynthetic pathways and the enzymatic origin of RvTs 1–4. PMID:27704804

  13. Giga-z: A 100,000 Object Superconducting Spectrophotometer for LSST Follow-up

    NASA Astrophysics Data System (ADS)

    Marsden, Danica W.; Mazin, Benjamin A.; O'Brien, Kieran; Hirata, Chris

    2013-09-01

    We simulate the performance of a new type of instrument, a Superconducting Multi-Object Spectrograph (SuperMOS), that uses microwave kinetic inductance detectors (MKIDs). MKIDs, a new detector technology, feature good quantum efficiency in the UVOIR, can count individual photons with microsecond timing accuracy, and, like X-ray calorimeters, determine their energy to several percent. The performance of Giga-z, a SuperMOS designed for wide field imaging follow-up observations, is evaluated using simulated observations of the COSMOS mock catalog with an array of 100,000 R 423 nm = E/ΔE = 30 MKID pixels. We compare our results against a simultaneous simulation of LSST observations. In 3 yr on a dedicated 4 m class telescope, Giga-z could observe ≈2 billion galaxies, yielding a low-resolution spectral energy distribution spanning 350-1350 nm for each; 1000 times the number measured with any currently proposed LSST spectroscopic follow-up, at a fraction of the cost and time. Giga-z would provide redshifts for galaxies up to z ≈ 6 with magnitudes mi <~ 25, with accuracy σΔz/(1 + z) ≈ 0.03 for the whole sample, and σΔz/(1 + z) ≈ 0.007 for a select subset. We also find catastrophic failure rates and biases that are consistently lower than for LSST. The added constraint on dark energy parameters for WL + CMB by Giga-z using the FoMSWG default model is equivalent to multiplying the LSST Fisher matrix by a factor of α = 1.27 (wp ), 1.53 (wa ), or 1.98 (Δγ). This is equivalent to multiplying both the LSST coverage area and the training sets by α and reducing all systematics by a factor of 1/\\sqrt{\\alpha }, advantages that are robust to even more extreme models of intrinsic alignment.

  14. Statistical functions and relevant correlation coefficients of clearness index

    NASA Astrophysics Data System (ADS)

    Pavanello, Diego; Zaaiman, Willem; Colli, Alessandra; Heiser, John; Smith, Scott

    2015-08-01

    This article presents a statistical analysis of the sky conditions, during years from 2010 to 2012, for three different locations: the Joint Research Centre site in Ispra (Italy, European Solar Test Installation - ESTI laboratories), the site of National Renewable Energy Laboratory in Golden (Colorado, USA) and the site of Brookhaven National Laboratories in Upton (New York, USA). The key parameter is the clearness index kT, a dimensionless expression of the global irradiance impinging upon a horizontal surface at a given instant of time. In the first part, the sky conditions are characterized using daily averages, giving a general overview of the three sites. In the second part the analysis is performed using data sets with a short-term resolution of 1 sample per minute, demonstrating remarkable properties of the statistical distributions of the clearness index, reinforced by a proof using fuzzy logic methods. Successively some time-dependent correlations between different meteorological variables are presented in terms of Pearson and Spearman correlation coefficients, and introducing a new one.

  15. Assessment of home environments with a fungal index using hydrophilic and xerophilic fungi as biologic sensors.

    PubMed

    Abe, K

    2012-06-01

      Previously, the author proposed a 'fungal index' that quantifies the capacity for fungal growth in a test environment where a device (fungal detector) encapsulating spores of a xerophilic sensor fungus Eurotium herbariorum was placed. It was also found that an extremely xerophilic fungus, Aspergillus penicillioides, was suitable as a sensor fungus at sites with lower relative humidity (RH). In this report, the hydrophilic fungus Alternaria alternata was added to sensor fungi for the determination of the index in extremely humid environments. Measurements of the index and observations of the formation of spores by the sensor fungi were made in stable climates in moisture chambers, under natural conditions in homes, and in bathrooms prepared in an artificial climate chamber. Higher index values and earlier sporulation were obtained at higher RH in stable climates. The hydrophilic Alt. alternata showed the greatest response at 100% and 97.3% RH, the moderately xerophilic Eur. herbariorum, at 94%, 84%, and 75% RH, and the extremely xerophilic Asp. penicillioides, at 71% RH. In homes, the hydrophilic fungus was most active in water-usage areas, and the xerophilic fungi were most active in non-water-usage areas. Sporulation was observed on sensor fungi in fungal detectors placed in rooms where the index exceeded 18 ru/week after one-month exposure. Sites where the index exceeded 18 ru/week were referred to as damp, where fungal contamination seems to be unavoidable. Evaluations of ventilation systems in bathrooms with extremely humid climates showed typical examples of a countermeasure to fungal contamination. The purpose of this study is to establish a fungal index applicable in home environments with extremely high to relatively low relative humidity climates. The sensor fungus that showed the greatest response in a fungal detector (a device encapsulating spores of sensor fungi) served as not only a quantitative but also a qualitative indicator of the environment

  16. PLUTONIUM FINISHING PLANT (PFP) 241-Z LIQUID WASTE TREATMENT FACILITY DEACTIVATION AND DEMOLITION

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    JOHNSTON GA

    2008-01-15

    Fluor Hanford, Inc. (FH) is proud to submit the Plutonium Finishing Plant (PFP) 241-Z liquid Waste Treatment Facility Deactivation and Demolition (D&D) Project for consideration by the Project Management Institute as Project of the Year for 2008. The decommissioning of the 241-Z Facility presented numerous challenges, many of which were unique with in the Department of Energy (DOE) Complex. The majority of the project budget and schedule was allocated for cleaning out five below-grade tank vaults. These highly contaminated, confined spaces also presented significant industrial safety hazards that presented some of the most hazardous work environments on the Hanford Site.more » The 241-Z D&D Project encompassed diverse tasks: cleaning out and stabilizing five below-grade tank vaults (also called cells), manually size-reducing and removing over three tons of process piping from the vaults, permanently isolating service utilities, removing a large contaminated chemical supply tank, stabilizing and removing plutonium-contaminated ventilation ducts, demolishing three structures to grade, and installing an environmental barrier on the demolition site . All of this work was performed safely, on schedule, and under budget. During the deactivation phase of the project between November 2005 and February 2007, workers entered the highly contaminated confined-space tank vaults 428 times. Each entry (or 'dive') involved an average of three workers, thus equaling approximately 1,300 individual confined -space entries. Over the course of the entire deactivation and demolition period, there were no recordable injuries and only one minor reportable skin contamination. The 241-Z D&D Project was decommissioned under the provisions of the 'Hanford Federal Facility Agreement and Consent Order' (the Tri-Party Agreement or TPA), the 'Resource Conservation and Recovery Act of 1976' (RCRA), and the 'Comprehensive Environmental Response, Compensation, and Liability Act of 1980' (CERCLA

  17. Tissue oxygen saturation and finger perfusion index in central hypovolemia: influence of pain.

    PubMed

    Høiseth, Lars Ø; Hisdal, Jonny; Hoff, Ingrid E; Hagen, Ove A; Landsverk, Svein A; Kirkebøen, Knut A

    2015-04-01

    Tissue oxygen saturation and peripheral perfusion index are proposed as early indirect markers of hypovolemia in trauma patients. Hypovolemia is associated with increased sympathetic nervous activity. However, many other stimuli, such as pain, also increase sympathetic activity. Since pain is often present in trauma patients, its effect on the indirect measures of hypovolemia needs to be clarified. The aim of this study was, therefore, to explore the effects of hypovolemia and pain on tissue oxygen saturation (measurement sites: cerebral, deltoid, forearm, and thenar) and finger photoplethysmographic perfusion index. Experimental study. University hospital clinical circulation and research laboratory. Twenty healthy volunteers. Central hypovolemia was induced with lower body negative pressure (-60 mm Hg) and pain by the cold pressor test (ice water exposure). Interventions were performed in a 2×2 fashion with the combination of lower body negative pressure or not (normovolemia), and ice water or not (sham). Each subject was thus exposed to four experimental sequences, each lasting for 8 minutes. Measurements were averaged over 30 seconds. For each person and sequence, the minimal value was analyzed. Tissue oxygenation in all measurement sites and finger perfusion index were reduced during hypovolemia/sham compared with normovolemia/sham. Tissue oxygen saturation (except cerebral) and perfusion index were reduced by pain during normovolemia. There was a larger reduction in tissue oxygenation (all measurement sites) and perfusion index during hypovolemia and pain than during normovolemia and pain. Pain (cold pressor test) reduces tissue oxygen saturation in all measurement sites (except cerebral) and perfusion index. In the presence of pain, tissue oxygen saturation and perfusion index are further reduced by hypovolemia (lower body negative pressure, -60 mm Hg). Thus, pain must be considered when evaluating tissue oxygen saturation and perfusion index as markers of

  18. High refractive index substrates for fluorescence microscopy of biological interfaces with high z contrast

    PubMed Central

    Ajo-Franklin, Caroline M.; Kam, Lance; Boxer, Steven G.

    2001-01-01

    Total internal reflection fluorescence microscopy is widely used to confine the excitation of a complex fluorescent sample very close to the material on which it is supported. By working with high refractive index solid supports, it is possible to confine even further the evanescent field, and by varying the angle of incidence, to obtain quantitative information on the distance of the fluorescent object from the surface. We report the fabrication of hybrid surfaces consisting of nm layers of SiO2 on lithium niobate (LiNbO3, n = 2.3). Supported lipid bilayer membranes can be assembled and patterned on these hybrid surfaces as on conventional glass. By varying the angle of incidence of the excitation light, we are able to obtain fluorescent contrast between 40-nm fluorescent beads tethered to a supported bilayer and fluorescently labeled protein printed on the surface, which differ in vertical position by only tens of nm. Preliminary experiments that test theoretical models for the fluorescence-collection factor near a high refractive index surface are presented, and this factor is incorporated into a semiquantitative model used to predict the contrast of the 40-nm bead/protein system. These results demonstrate that it should be possible to profile the vertical location of fluorophores on the nm distance scale in real time, opening the possibility of many experiments at the interface between supported membranes and living cells. Improvements in materials and optical techniques are outlined. PMID:11717428

  19. Refractive index modulation in LiNbO3: MgO slab through Lamb wave

    NASA Astrophysics Data System (ADS)

    Prakash, Suraj; Sharma, Gaurav; Yadav, Gulab Chand; Singh, Vivek

    2018-05-01

    Present theoretical analysis deals with inducing refractive index contrast in Y-Z LiNbO3:MgO plate via GHz Lamb wave perturbation for photonic applications. Dispersion curves for Lamb wave in plate are plotted by employing displacement potential technique. Selecting wave parameters from dispersion curve, fundamental symmetric Lamb mode (S0) is excited in slab for 6GHz frequency. Produced displacement field by propagating S0 mode and thus developed strain is estimated to calculate refractive index modulation by applying photo-elastic relations. Modulated refractive index is of sinusoidal nature with period of modulation dependence on Lamb's wavelength. This plate having periodically modulated refractive index can be used as photonic crystal for different applications with acoustically tunable photonic band gap.

  20. A Restoration Suitability Index Model for the Eastern Oyster (Crassostrea virginica) in the Mission-Aransas Estuary, TX, USA

    PubMed Central

    Beseres Pollack, Jennifer; Cleveland, Andrew; Palmer, Terence A.; Reisinger, Anthony S.; Montagna, Paul A.

    2012-01-01

    Oyster reefs are one of the most threatened marine habitats on earth, with habitat loss resulting from water quality degradation, coastal development, destructive fishing practices, overfishing, and storm impacts. For successful and sustainable oyster reef restoration efforts, it is necessary to choose sites that support long-term growth and survival of oysters. Selection of suitable sites is critically important as it can greatly influence mortality factors and may largely determine the ultimate success of the restoration project. The application of Geographic Information Systems (GIS) provides an effective methodology for identifying suitable sites for oyster reef restoration and removes much of the uncertainty involved in the sometimes trial and error selection process. This approach also provides an objective and quantitative tool for planning future oyster reef restoration efforts. The aim of this study was to develop a restoration suitability index model and reef quality index model to characterize locations based on their potential for successful reef restoration within the Mission-Aransas Estuary, Texas, USA. The restoration suitability index model focuses on salinity, temperature, turbidity, dissolved oxygen, and depth, while the reef quality index model focuses on abundance of live oysters, dead shell, and spat. Size-specific Perkinsus marinus infection levels were mapped to illustrate general disease trends. This application was effective in identifying suitable sites for oyster reef restoration, is flexible in its use, and provides a mechanism for considering alternative approaches. The end product is a practical decision-support tool that can be used by coastal resource managers to improve oyster restoration efforts. As oyster reef restoration activities continue at small and large-scales, site selection criteria are critical for assisting stakeholders and managers and for maximizing long-term sustainability of oyster resources. PMID:22792410

  1. Extreme ultraviolet index due to broken clouds at a midlatitude site, Granada (southeastern Spain)

    NASA Astrophysics Data System (ADS)

    Antón, M.; Piedehierro, A. A.; Alados-Arboledas, L.; Wolfran, E.; Olmo, F. J.

    2012-11-01

    Cloud cover usually attenuates the ultraviolet (UV) solar radiation but, under certain sky conditions, the clouds may produce an enhancement effect increasing the UV levels at surface. The main objective of this paper is to analyze an extreme UV enhancement episode recorded on 16 June 2009 at Granada (southeastern Spain). This phenomenon was characterized by a quick and intense increase in surface UV radiation under broken cloud fields (5-7 oktas) in which the Sun was surrounded by cumulus clouds (confirmed with sky images). Thus, the UV index (UVI) showed an enhancement of a factor 4 in the course of only 30 min around midday, varying from 2.6 to 10.4 (higher than the corresponding clear-sky UVI value). Additionally, the UVI presented values higher than 10 (extreme erythemal risk) for about 20 min running, with a maximum value around 11.5. The use of an empirical model and the total ozone column (TOC) derived from the Global Ozone Monitoring Experiment (GOME) for the period 1995-2011 showed that the value of UVI ~ 11.5 is substantially larger than the highest index that could origin the natural TOC variations over Granada. Finally, the UV erythemal dose accumulated during the period of 20 min with the extreme UVI values under broken cloud fields was 350 J/m2 which surpass the energy required to produce sunburn of the most human skin types.

  2. Landfill Site Selection by AHP Based Multi-criteria Decision Making Tool: A Case Study in Kolkata, India

    NASA Astrophysics Data System (ADS)

    Majumdar, Ankush; Hazra, Tumpa; Dutta, Amit

    2017-09-01

    This work presents a Multi-criteria Decision Making (MCDM) tool to select a landfill site from three candidate sites proposed for Kolkata Municipal Corporation (KMC) area that complies with accessibility, receptor, environment, public acceptability, geological and economic criteria. Analytical Hierarchy Process has been used to solve the MCDM problem. Suitability of the three sites (viz. Natagachi, Gangajoara and Kharamba) as landfills as proposed by KMC has been checked by Landfill Site Sensitivity Index (LSSI) as well as Economic Viability Index (EVI). Land area availability for disposing huge quantity of Municipal Solid Waste for the design period has been checked. Analysis of the studied sites show that they are moderately suitable for landfill facility construction as both LSSI and EVI scores lay between 300 and 750. The proposed approach represents an effective MCDM tool for siting sanitary landfill in growing metropolitan cities of developing countries like India.

  3. A Soil Service Index: a method for quantifying the value, vulnerability, and status of soil resources

    NASA Astrophysics Data System (ADS)

    Harden, J. W.; Loisel, J.; Hugelius, G.; Sulman, B. N.; Bond-Lamberty, B. P.; Abramoff, R. Z.; Malhotra, A.; Gill, A. L.

    2017-12-01

    Soils support ecological and human systems by providing a physical and biogeochemical basis for plant growth, ecological functions, water quality, and water storage, and by providing services and functions needed for economic development, human well-being, and conservation of natural resources. Quantitative evaluation of soil services, however, is inconsistent and poorly communicated, in part because we lack a scientific, unified basis for evaluating soils and their potential for serving our needs. We introduce an index of soil service (SSI) in which multiple services are numerically or quantitatively assessed, normalized to a unit-less scale for purposes of intercomparability, and evaluated for a given site or region. Services include organic matter and/or organic carbon storage; plant productivity; CO2 or GHG exchange with the atmosphere; water storage capacity; and nutrient storage and/or availability. The status of SSI can be evaluated by individual services or by a composite index that combines multiple services. The status can be monitored over time; and key services that are more highly valued for a given soil can be weighted accordingly in comparison to other services. As a first step, existing data for each service are captured from a literature and data review in order to establish the full range of values. A site value establishes the ranking relative to the full range. Key services are weighted according to local values. A final index is the sum of the normalized, weighted products. Metrics can be updated and adapted as new data or services are discovered or recognized. Metrics can be used to compare among sites, regions, or time periods.

  4. Numerical study of the medium thickness in the Z-scan technique

    NASA Astrophysics Data System (ADS)

    Severiano Carrillo, I.; Méndez Otero, M. M.; Arroyo Carrasco, M. L.; Iturbe Castillo, M. D.

    2011-09-01

    The optical characterization of nonlinear media through the Z-scan technique considers initially a thin medium (with a thickness much less than the beam depth of focus). It has been observed that increasing the thickness of the medium the transmittance increases, this means that n2 increases, for this reason we will present a numerical model to determinate the minimum thin and the maximum thick medium limit. A thin medium is considered as a thin lens with focal length F1 and a thick medium can be regarded as a set of such thin lenses set with focal lengths F2, these lenses are contained in a medium whit a refraction index different than air. This analysis is made through Matlab using the theory of Gaussian beams, ABCD matrices and the q parameter, elementary theory in the development of this work, where the main feature of this model is that the nonlinearity type of the medium is considered as an integer constant in its focal length3. We present the graphs obtained from Z-scan for thick medium with both thermal and Kerr nonlinearities.

  5. Body mass index and waist circumference are not good surrogate indicators of adiposity in psychogeriatric patients.

    PubMed

    Camina Martín, M Alicia; De Mateo Silleras, Beatriz; Miján De La Torre, Alberto; Barrera Ortega, Sara; Domínguez Rodríguez, Luis; Redondo Del Río, M Paz

    2016-01-01

    to assess the utility of body mass index (BMI) and waist circumference (WC) as surrogate indicators of adiposity with respect to the total body fat estimated with bioimpedance analysis in psychogeriatric patients. Anthropometric and hand-to-foot bioimpedance measurements were performed according to standard procedures in a sample of 128 psychogeriatric patients (87 males, 41 females). WC cutoffs proposed by the International Diabetes Federation were used to define abdominal obesity. Z-scores of fat and fat-free mass indices (Z-FMI and Z-FFMI) were calculated. Males with WC values below the cutoff were normal weight, and showed normal levels of FM and low FFM (Z-FFMI below 1.5 SD). Males with WC values above the cutoff were overweight, showed high levels of FM (Z-FMI: 1.34 SD) and a slight depletion of FFM (Z-FFMI: -0.59 SD). In females with WC values below the cutoff, BMI was close to 20 kg/m(2) and both FM and FFM were depleted (Z-FMI: -0.7 SD; Z-FFMI: -1.76 SD). In females with WC above the cutoff, the average BMI was 25.6 kg/m(2) , Z-FMI was 0.48 SD, and Z-FFMI was -0.56 SD. Our results indicate that it is necessary to establish age and sex-specific BMI and WC cutoffs, and also highlight the importance of focusing on body composition analysis to ensure an accurate nutritional diagnosis in older-adults and in psychogeriatric patients. © 2015 Wiley Periodicals, Inc.

  6. Optical Limiting by Index-Matched Phase-Segregated Mixtures

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Exarhos, Gregory J.; Ferris, Kim F.; Manijeh Razeghi, Gail J. Brown

    The nonlinear optical response for index-matched, non-absorbing immiscible phases (liquid-solid, liquid-liquid, solid-solid) has been determined by means of open aperture z-scan measurements. In mixtures where one constituent shows a relatively high optical nonlinearity, rapid and reversible transformation to a light-scattering state is observed under conditions where a critical incident light fluence is exceeded. This passive broadband response is induced by a transient change in the dispersive part of the refractive index, and is based upon the Christiansen-Shelyubskii filter that at one time was used as a means to monitor the temperature of glass melts. Modeling studies are used to simulatemore » scattering intensities in such textured composites as a function of composition, microstructure, and constituent optical properties. Results provide a rational approach to the selection of materials for use in these limiters. Challenges to preparing dispersed phase mixtures and their response to 532 nm nanosecond pulsed laser irradiation are described.« less

  7. Development of a multimetric index for fish assemblages in a cold tailwater in Tennessee

    USGS Publications Warehouse

    Ivasauskas, Tomas J.; Bettoli, Phillip William

    2014-01-01

    Tailwaters downstream of hypolimnetic-release hydropeaking dams exhibit a unique combination of stressors that affects the structure and function of resident fish assemblages. We developed a statistically and biologically defensible multimetric index of fish assemblages for the Caney Fork River below Center Hill Dam, Tennessee. Fish assemblages were sampled at five sites using boat-mounted and backpack electrofishing gear from fall 2009 through summer 2011. A multivariate statistical approach was used to select metrics that best reflected the downstream gradients in abiotic variables. Five metrics derived from boat electrofishing samples and four metrics derived from backpack electrofishing samples were selected for incorporation into the index based on their high correlation with environmental data. The nine metrics demonstrated predictable patterns of increase or decrease with increasing distance downstream of the dam. The multimetric index generally exhibited a pattern of increasing scores with increasing distance from the dam, indicating a downstream recovery gradient in fish assemblage composition. The index can be used to monitor anticipated changes in the fish communities of the Caney Fork River when repairs to Center Hill Dam are completed later this decade, resulting in altered dam operations.

  8. The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae

    PubMed Central

    Neves, Lauren T.; Douglass, Stephen; Spreafico, Roberto; Venkataramanan, Srivats; Kress, Tracy L.; Johnson, Tracy L.

    2017-01-01

    In eukaryotes, a dynamic ribonucleic protein machine known as the spliceosome catalyzes the removal of introns from premessenger RNA (pre-mRNA). Recent studies show the processes of RNA synthesis and RNA processing to be spatio–temporally coordinated, indicating that RNA splicing takes place in the context of chromatin. H2A.Z is a highly conserved histone variant of the canonical histone H2A. In Saccharomyces cerevisiae, H2A.Z is deposited into chromatin by the SWR-C complex, is found near the 5′ ends of protein-coding genes, and has been implicated in transcription regulation. Here we show that splicing of intron-containing genes in cells lacking H2A.Z is impaired, particularly under suboptimal splicing conditions. Cells lacking H2A.Z are especially dependent on a functional U2 snRNP (small nuclear RNA [snRNA] plus associated proteins), as H2A.Z shows extensive genetic interactions with U2 snRNP-associated proteins, and RNA sequencing (RNA-seq) reveals that introns with nonconsensus branch points are particularly sensitive to H2A.Z loss. Consistently, H2A.Z promotes efficient spliceosomal rearrangements involving the U2 snRNP, as H2A.Z loss results in persistent U2 snRNP association and decreased recruitment of downstream snRNPs to nascent RNA. H2A.Z impairs transcription elongation, suggesting that spliceosome rearrangements are tied to H2A.Z's role in elongation. Depletion of disassembly factor Prp43 suppresses H2A.Z-mediated splice defects, indicating that, in the absence of H2A.Z, stalled spliceosomes are disassembled, and unspliced RNAs are released. Together, these data demonstrate that H2A.Z is required for efficient pre-mRNA splicing and indicate a role for H2A.Z in coordinating the kinetics of transcription elongation and splicing. PMID:28446598

  9. Anomalous bulk behavior in the free parafermion Z (N ) spin chain

    NASA Astrophysics Data System (ADS)

    Alcaraz, Francisco C.; Batchelor, Murray T.

    2018-06-01

    We demonstrate using direct numerical diagonalization and extrapolation methods that boundary conditions have a profound effect on the bulk properties of a simple Z (N ) model for N ≥3 for which the model Hamiltonian is non-Hermitian. For N =2 the model reduces to the well-known quantum Ising model in a transverse field. For open boundary conditions, the Z (N ) model is known to be solved exactly in terms of free parafermions. Once the ends of the open chain are connected by considering the model on a ring, the bulk properties, including the ground-state energy per site, are seen to differ dramatically with increasing N . Other properties, such as the leading finite-size corrections to the ground-state energy, the mass gap exponent, and the specific-heat exponent, are also seen to be dependent on the boundary conditions. We speculate that this anomalous bulk behavior is a topological effect.

  10. Estimation of design floods in ungauged catchments using a regional index flood method. A case study of Lake Victoria Basin in Kenya

    NASA Astrophysics Data System (ADS)

    Nobert, Joel; Mugo, Margaret; Gadain, Hussein

    Reliable estimation of flood magnitudes corresponding to required return periods, vital for structural design purposes, is impacted by lack of hydrological data in the study area of Lake Victoria Basin in Kenya. Use of regional information, derived from data at gauged sites and regionalized for use at any location within a homogenous region, would improve the reliability of the design flood estimation. Therefore, the regional index flood method has been applied. Based on data from 14 gauged sites, a delineation of the basin into two homogenous regions was achieved using elevation variation (90-m DEM), spatial annual rainfall pattern and Principal Component Analysis of seasonal rainfall patterns (from 94 rainfall stations). At site annual maximum series were modelled using the Log normal (LN) (3P), Log Logistic Distribution (LLG), Generalized Extreme Value (GEV) and Log Pearson Type 3 (LP3) distributions. The parameters of the distributions were estimated using the method of probability weighted moments. Goodness of fit tests were applied and the GEV was identified as the most appropriate model for each site. Based on the GEV model, flood quantiles were estimated and regional frequency curves derived from the averaged at site growth curves. Using the least squares regression method, relationships were developed between the index flood, which is defined as the Mean Annual Flood (MAF) and catchment characteristics. The relationships indicated area, mean annual rainfall and altitude were the three significant variables that greatly influence the index flood. Thereafter, estimates of flood magnitudes in ungauged catchments within a homogenous region were estimated from the derived equations for index flood and quantiles from the regional curves. These estimates will improve flood risk estimation and to support water management and engineering decisions and actions.

  11. Z-DNA binding protein from chicken blood nuclei

    NASA Technical Reports Server (NTRS)

    Herbert, A. G.; Spitzner, J. R.; Lowenhaupt, K.; Rich, A.

    1993-01-01

    A protein (Z alpha) that appears to be highly specific for the left-handed Z-DNA conformer has been identified in chicken blood nuclear extracts. Z alpha activity is measured in a band-shift assay by using a radioactive probe consisting of a (dC-dG)35 oligomer that has 50% of the deoxycytosines replaced with 5-bromodeoxycytosine. In the presence of 10 mM Mg2+, the probe converts to the Z-DNA conformation and is bound by Z alpha. The binding of Z alpha to the radioactive probe is specifically blocked by competition with linear poly(dC-dG) stabilized in the Z-DNA form by chemical bromination but not by B-form poly(dC-dG) or boiled salmon-sperm DNA. In addition, the binding activity of Z alpha is competitively blocked by supercoiled plasmids containing a Z-DNA insert but not by either the linearized plasmid or by an equivalent amount of the parental supercoiled plasmid without the Z-DNA-forming insert. Z alpha can be crosslinked to the 32P-labeled brominated probe with UV light, allowing us to estimate that the minimal molecular mass of Z alpha is 39 kDa.

  12. Z dependence of thick-target β-ray backscattering

    NASA Astrophysics Data System (ADS)

    Sharma, K. K.; Singh, M.

    1980-04-01

    Variation of β-ray backscattering with the atomic number of target material has been studied using thick targets of polythene, aluminum, iron, copper, zinc, tin, silver, tungsten, and lead for five β emitters, viz., 35S, 147Pm, 204Tl, 32P, and 90Sr-90Y. Effects of geometry and β-ray end-point energy have been investigated using a reflection geometry in which the geometry factors were varied by more than 40 and β-ray energy varied over a range 0.167-2.27 MeV. It is found that the mean value of the index of Z dependence of β-ray backscattering is 1.840.05 over these regions of geometry and energy. Deviations for soft β emitters have been confirmed as due to air absorption. The importance of these results in studies of two-component systems is emphasized.

  13. Definitions of components of the master water data index maintained by the National Water Data Exchange

    USGS Publications Warehouse

    Perry, R.A.; Williams, O.O.

    1982-01-01

    The Master Water Data Index is a computerized data base developed and maintained by the National Water Data Exchange (NAWDEX). The Index contains information about water-data collection sites. This information includes: the identification of new sites for which water data are available, the locations of these sites, the type of site, the data-collection organization, the types of data available, the major water-data parameters for which data are available, the frequency at which these parameters are measured, the period of time for which data are available, and the medial in which the data are stored. This document, commonly referred to as the MWDI data dictionary, contains a definition and description of each component of the Master Water Data Index data base. (USGS)

  14. Site classification of ponderosa pine stands under stocking control in California

    Treesearch

    Robert F. Powers; William W. Oliver

    1978-01-01

    Existing systems for estimating site index of ponderosa pine (Pinus ponderosa Laws.) do not apply well to California stands where stocking is controlled. A more suitable system has been developed using trends in natural height growth, derived from stem analysis of dominant trees in California. This site index system produces polymorphic patterns of...

  15. Development of the 2nd generation z(Redshift) and early universe spectrometer & the study of far-IR fine structure emission in high-z galaxies

    NASA Astrophysics Data System (ADS)

    Ferkinhoff, Carl

    The 2nd generation z (Redshift) and Early Universe Spectrometer (ZEUS-2), is a long-slit echelle-grating spectrometer (R~1000) for observations at submillimeter wavelengths from 200 to 850 microm. Its design is optimized for the detection of redshifted far-infrared spectral lines from galaxies in the early universe. Combining exquisite sensitivity, broad wavelength coverage, and large (˜2.5%) instantaneous bandwidth, ZEUS-2 is uniquely suited for studying galaxies between z˜0.2 and 5---spanning the peaks in both the star formation rate and number of AGN in the universe. ZEUS-2 saw first light at the Caltech Submillimeter Observatory (CSO) in the Spring of 2012 and was commissioned on the Atacama Pathfinder Experiment (APEX) in November 2012. Here we detail the design and performance of ZEUS-2, first however we discuss important science results that are examples of the science enabled by ZEUS-2. Using the first generation z (Redshift) and Early Universe Spectrometer (ZEUS-1) we made the first high-z detections of the [NII] 122 microm and [OIII] 88 microm lines. We detect these lines from starburst galaxies between z ˜2.5 and 4 demonstrating the utility of these lines for characterizing the properties of early galaxies. Specifically we are able to determine the most massive star still on the main sequence, the number of those stars and a lower limit on the mass of ionized gas in the source. Next we present ZEUS-2's first science result. Using ZEUS-2 on APEX we have detected the [CII] 158 microm line from the z = 1.78 galaxy H-ATLAS J091043.1-000322 with a line flux of (6.44 +/- 0.42) ˜ 10-18 W m-2. Combined with its far-infrared luminosity and a new Herschel-PACS detection of the [OI] 63 microm line we are able to conclude that H-ATLAS J091043.1-000322 is a high redshift analogue of a local ultra-luminous infrared galaxy, i.e. it is likely the site of a compact starburst due to a major merger. This detection, combined with the ZEUS-1 observations of the [NII

  16. Search for massive resonances decaying into W W , W Z , Z Z , q W , and q Z with dijet final states at √{s }=13 TeV

    NASA Astrophysics Data System (ADS)

    Sirunyan, A. M.; Tumasyan, A.; Adam, W.; Ambrogi, F.; Asilar, E.; Bergauer, T.; Brandstetter, J.; Brondolin, E.; Dragicevic, M.; Erö, J.; Flechl, M.; Friedl, M.; Frühwirth, R.; Ghete, V. M.; Grossmann, J.; Hrubec, J.; Jeitler, M.; König, A.; Krammer, N.; Krätschmer, I.; Liko, D.; Madlener, T.; Mikulec, I.; Pree, E.; Rabady, D.; Rad, N.; Rohringer, H.; Schieck, J.; Schöfbeck, R.; Spanring, M.; Spitzbart, D.; Waltenberger, W.; Wittmann, J.; Wulz, C.-E.; Zarucki, M.; Chekhovsky, V.; Mossolov, V.; Suarez Gonzalez, J.; De Wolf, E. A.; Di Croce, D.; Janssen, X.; Lauwers, J.; Van Haevermaet, H.; Van Mechelen, P.; Van Remortel, N.; Abu Zeid, S.; Blekman, F.; D'Hondt, J.; De Bruyn, I.; De Clercq, J.; Deroover, K.; Flouris, G.; Lontkovskyi, D.; Lowette, S.; Moortgat, S.; Moreels, L.; Python, Q.; Skovpen, K.; Tavernier, S.; Van Doninck, W.; Van Mulders, P.; Van Parijs, I.; Brun, H.; Clerbaux, B.; De Lentdecker, G.; Delannoy, H.; Fasanella, G.; Favart, L.; Goldouzian, R.; Grebenyuk, A.; Karapostoli, G.; Lenzi, T.; Luetic, J.; Maerschalk, T.; Marinov, A.; Randle-conde, A.; Seva, T.; Vander Velde, C.; Vanlaer, P.; Vannerom, D.; Yonamine, R.; Zenoni, F.; Zhang, F.; Cimmino, A.; Cornelis, T.; Dobur, D.; Fagot, A.; Gul, M.; Khvastunov, I.; Poyraz, D.; Roskas, C.; Salva, S.; Tytgat, M.; Verbeke, W.; Zaganidis, N.; Bakhshiansohi, H.; Bondu, O.; Brochet, S.; Bruno, G.; Caputo, C.; Caudron, A.; De Visscher, S.; Delaere, C.; Delcourt, M.; Francois, B.; Giammanco, A.; Jafari, A.; Komm, M.; Krintiras, G.; Lemaitre, V.; Magitteri, A.; Mertens, A.; Musich, M.; Piotrzkowski, K.; Quertenmont, L.; Vidal Marono, M.; Wertz, S.; Beliy, N.; Aldá Júnior, W. L.; Alves, F. L.; Alves, G. A.; Brito, L.; Correa Martins Junior, M.; Hensel, C.; Moraes, A.; Pol, M. E.; Rebello Teles, P.; Belchior Batista Das Chagas, E.; Carvalho, W.; Chinellato, J.; Custódio, A.; Da Costa, E. M.; Da Silveira, G. G.; De Jesus Damiao, D.; Fonseca De Souza, S.; Huertas Guativa, L. M.; Malbouisson, H.; Melo De Almeida, M.; Mora Herrera, C.; Mundim, L.; Nogima, H.; Santoro, A.; Sznajder, A.; Tonelli Manganote, E. J.; Torres Da Silva De Araujo, F.; Vilela Pereira, A.; Ahuja, S.; Bernardes, C. A.; Fernandez Perez Tomei, T. R.; Gregores, E. M.; Mercadante, P. G.; Novaes, S. F.; Padula, Sandra S.; Romero Abad, D.; Ruiz Vargas, J. C.; Aleksandrov, A.; Hadjiiska, R.; Iaydjiev, P.; Misheva, M.; Rodozov, M.; Shopova, M.; Stoykova, S.; Sultanov, G.; Dimitrov, A.; Glushkov, I.; Litov, L.; Pavlov, B.; Petkov, P.; Fang, W.; Gao, X.; Ahmad, M.; Bian, J. G.; Chen, G. M.; Chen, H. S.; Chen, M.; Chen, Y.; Jiang, C. H.; Leggat, D.; Liao, H.; Liu, Z.; Romeo, F.; Shaheen, S. M.; Spiezia, A.; Tao, J.; Wang, C.; Wang, Z.; Yazgan, E.; Zhang, H.; Zhang, S.; Zhao, J.; Ban, Y.; Chen, G.; Li, Q.; Liu, S.; Mao, Y.; Qian, S. J.; Wang, D.; Xu, Z.; Avila, C.; Cabrera, A.; Chaparro Sierra, L. F.; Florez, C.; González Hernández, C. F.; Ruiz Alvarez, J. D.; Courbon, B.; Godinovic, N.; Lelas, D.; Puljak, I.; Ribeiro Cipriano, P. M.; Sculac, T.; Antunovic, Z.; Kovac, M.; Brigljevic, V.; Ferencek, D.; Kadija, K.; Mesic, B.; Starodumov, A.; Susa, T.; Ather, M. W.; Attikis, A.; Mavromanolakis, G.; Mousa, J.; Nicolaou, C.; Ptochos, F.; Razis, P. A.; Rykaczewski, H.; Finger, M.; Finger, M.; Carrera Jarrin, E.; Assran, Y.; Elgammal, S.; Mahrous, A.; Dewanjee, R. K.; Kadastik, M.; Perrini, L.; Raidal, M.; Tiko, A.; Veelken, C.; Eerola, P.; Pekkanen, J.; Voutilainen, M.; Härkönen, J.; Järvinen, T.; Karimäki, V.; Kinnunen, R.; Lampén, T.; Lassila-Perini, K.; Lehti, S.; Lindén, T.; Luukka, P.; Tuominen, E.; Tuominiemi, J.; Tuovinen, E.; Talvitie, J.; Tuuva, T.; Besancon, M.; Couderc, F.; Dejardin, M.; Denegri, D.; Faure, J. L.; Ferri, F.; Ganjour, S.; Ghosh, S.; Givernaud, A.; Gras, P.; Hamel de Monchenault, G.; Jarry, P.; Kucher, I.; Locci, E.; Machet, M.; Malcles, J.; Negro, G.; Rander, J.; Rosowsky, A.; Sahin, M. Ö.; Titov, M.; Abdulsalam, A.; Antropov, I.; Baffioni, S.; Beaudette, F.; Busson, P.; Cadamuro, L.; Charlot, C.; Granier de Cassagnac, R.; Jo, M.; Lisniak, S.; Lobanov, A.; Martin Blanco, J.; Nguyen, M.; Ochando, C.; Ortona, G.; Paganini, P.; Pigard, P.; Salerno, R.; Sauvan, J. B.; Sirois, Y.; Stahl Leiton, A. G.; Strebler, T.; Yilmaz, Y.; Zabi, A.; Zghiche, A.; Agram, J.-L.; Andrea, J.; Bloch, D.; Brom, J.-M.; Buttignol, M.; Chabert, E. C.; Chanon, N.; Collard, C.; Conte, E.; Coubez, X.; Fontaine, J.-C.; Gelé, D.; Goerlach, U.; Jansová, M.; Le Bihan, A.-C.; Tonon, N.; Van Hove, P.; Gadrat, S.; Beauceron, S.; Bernet, C.; Boudoul, G.; Chierici, R.; Contardo, D.; Depasse, P.; El Mamouni, H.; Fay, J.; Finco, L.; Gascon, S.; Gouzevitch, M.; Grenier, G.; Ille, B.; Lagarde, F.; Laktineh, I. B.; Lethuillier, M.; Mirabito, L.; Pequegnot, A. L.; Perries, S.; Popov, A.; Sordini, V.; Vander Donckt, M.; Viret, S.; Toriashvili, T.; Tsamalaidze, Z.; Autermann, C.; Feld, L.; Kiesel, M. K.; Klein, K.; Lipinski, M.; Preuten, M.; Schomakers, C.; Schulz, J.; Verlage, T.; Zhukov, V.; Albert, A.; Dietz-Laursonn, E.; Duchardt, D.; Endres, M.; Erdmann, M.; Erdweg, S.; Esch, T.; Fischer, R.; Güth, A.; Hamer, M.; Hebbeker, T.; Heidemann, C.; Hoepfner, K.; Knutzen, S.; Merschmeyer, M.; Meyer, A.; Millet, P.; Mukherjee, S.; Olschewski, M.; Pook, T.; Radziej, M.; Reithler, H.; Rieger, M.; Scheuch, F.; Teyssier, D.; Thüer, S.; Flügge, G.; Kargoll, B.; Kress, T.; Künsken, A.; Lingemann, J.; Müller, T.; Nehrkorn, A.; Nowack, A.; Pistone, C.; Pooth, O.; Stahl, A.; Aldaya Martin, M.; Arndt, T.; Asawatangtrakuldee, C.; Beernaert, K.; Behnke, O.; Behrens, U.; Bermúdez Martínez, A.; Bin Anuar, A. A.; Borras, K.; Botta, V.; Campbell, A.; Connor, P.; Contreras-Campana, C.; Costanza, F.; Diez Pardos, C.; Eckerlin, G.; Eckstein, D.; Eichhorn, T.; Eren, E.; Gallo, E.; Garay Garcia, J.; Geiser, A.; Gizhko, A.; Grados Luyando, J. M.; Grohsjean, A.; Gunnellini, P.; Guthoff, M.; Harb, A.; Hauk, J.; Hempel, M.; Jung, H.; Kalogeropoulos, A.; Kasemann, M.; Keaveney, J.; Kleinwort, C.; Korol, I.; Krücker, D.; Lange, W.; Lelek, A.; Lenz, T.; Leonard, J.; Lipka, K.; Lohmann, W.; Mankel, R.; Melzer-Pellmann, I.-A.; Meyer, A. B.; Mittag, G.; Mnich, J.; Mussgiller, A.; Ntomari, E.; Pitzl, D.; Raspereza, A.; Roland, B.; Savitskyi, M.; Saxena, P.; Shevchenko, R.; Spannagel, S.; Stefaniuk, N.; Van Onsem, G. P.; Walsh, R.; Wen, Y.; Wichmann, K.; Wissing, C.; Zenaiev, O.; Bein, S.; Blobel, V.; Centis Vignali, M.; Dreyer, T.; Garutti, E.; Gonzalez, D.; Haller, J.; Hinzmann, A.; Hoffmann, M.; Karavdina, A.; Klanner, R.; Kogler, R.; Kovalchuk, N.; Kurz, S.; Lapsien, T.; Marchesini, I.; Marconi, D.; Meyer, M.; Niedziela, M.; Nowatschin, D.; Pantaleo, F.; Peiffer, T.; Perieanu, A.; Scharf, C.; Schleper, P.; Schmidt, A.; Schumann, S.; Schwandt, J.; Sonneveld, J.; Stadie, H.; Steinbrück, G.; Stober, F. M.; Stöver, M.; Tholen, H.; Troendle, D.; Usai, E.; Vanelderen, L.; Vanhoefer, A.; Vormwald, B.; Akbiyik, M.; Barth, C.; Baur, S.; Butz, E.; Caspart, R.; Chwalek, T.; Colombo, F.; De Boer, W.; Dierlamm, A.; Freund, B.; Friese, R.; Giffels, M.; Gilbert, A.; Haitz, D.; Hartmann, F.; Heindl, S. M.; Husemann, U.; Kassel, F.; Kudella, S.; Mildner, H.; Mozer, M. U.; Müller, Th.; Plagge, M.; Quast, G.; Rabbertz, K.; Schäfer, D.; Schröder, M.; Shvetsov, I.; Sieber, G.; Simonis, H. J.; Ulrich, R.; Wayand, S.; Weber, M.; Weiler, T.; Williamson, S.; Wöhrmann, C.; Wolf, R.; Anagnostou, G.; Daskalakis, G.; Geralis, T.; Giakoumopoulou, V. A.; Kyriakis, A.; Loukas, D.; Topsis-Giotis, I.; Karathanasis, G.; Kesisoglou, S.; Panagiotou, A.; Saoulidou, N.; Kousouris, K.; Evangelou, I.; Foudas, C.; Kokkas, P.; Mallios, S.; Manthos, N.; Papadopoulos, I.; Paradas, E.; Strologas, J.; Triantis, F. A.; Csanad, M.; Filipovic, N.; Pasztor, G.; Veres, G. I.; Bencze, G.; Hajdu, C.; Horvath, D.; Hunyadi, Á.; Sikler, F.; Veszpremi, V.; Zsigmond, A. J.; Beni, N.; Czellar, S.; Karancsi, J.; Makovec, A.; Molnar, J.; Szillasi, Z.; Bartók, M.; Raics, P.; Trocsanyi, Z. L.; Ujvari, B.; Choudhury, S.; Komaragiri, J. R.; Bahinipati, S.; Bhowmik, S.; Mal, P.; Mandal, K.; Nayak, A.; Sahoo, D. K.; Sahoo, N.; Swain, S. K.; Bansal, S.; Beri, S. B.; Bhatnagar, V.; Chawla, R.; Dhingra, N.; Kalsi, A. K.; Kaur, A.; Kaur, M.; Kumar, R.; Kumari, P.; Mehta, A.; Singh, J. B.; Walia, G.; Kumar, Ashok; Shah, Aashaq; Bhardwaj, A.; Chauhan, S.; Choudhary, B. C.; Garg, R. B.; Keshri, S.; Kumar, A.; Malhotra, S.; Naimuddin, M.; Ranjan, K.; Sharma, R.; Bhardwaj, R.; Bhattacharya, R.; Bhattacharya, S.; Bhawandeep, U.; Dey, S.; Dutt, S.; Dutta, S.; Ghosh, S.; Majumdar, N.; Modak, A.; Mondal, K.; Mukhopadhyay, S.; Nandan, S.; Purohit, A.; Roy, A.; Roy, D.; Roy Chowdhury, S.; Sarkar, S.; Sharan, M.; Thakur, S.; Behera, P. 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M.; Khakzad, M.; Mohammadi Najafabadi, M.; Naseri, M.; Paktinat Mehdiabadi, S.; Rezaei Hosseinabadi, F.; Safarzadeh, B.; Zeinali, M.; Felcini, M.; Grunewald, M.; Abbrescia, M.; Calabria, C.; Colaleo, A.; Creanza, D.; Cristella, L.; De Filippis, N.; De Palma, M.; Errico, F.; Fiore, L.; Iaselli, G.; Lezki, S.; Maggi, G.; Maggi, M.; Miniello, G.; My, S.; Nuzzo, S.; Pompili, A.; Pugliese, G.; Radogna, R.; Ranieri, A.; Selvaggi, G.; Sharma, A.; Silvestris, L.; Venditti, R.; Verwilligen, P.; Abbiendi, G.; Battilana, C.; Bonacorsi, D.; Braibant-Giacomelli, S.; Campanini, R.; Capiluppi, P.; Castro, A.; Cavallo, F. R.; Chhibra, S. S.; Codispoti, G.; Cuffiani, M.; Dallavalle, G. M.; Fabbri, F.; Fanfani, A.; Fasanella, D.; Giacomelli, P.; Grandi, C.; Guiducci, L.; Marcellini, S.; Masetti, G.; Montanari, A.; Navarria, F. L.; Perrotta, A.; Rossi, A. M.; Rovelli, T.; Siroli, G. 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T.; Ligabue, F.; Lomtadze, T.; Manca, E.; Mandorli, G.; Martini, L.; Messineo, A.; Palla, F.; Rizzi, A.; Savoy-Navarro, A.; Spagnolo, P.; Tenchini, R.; Tonelli, G.; Venturi, A.; Verdini, P. G.; Barone, L.; Cavallari, F.; Cipriani, M.; Daci, N.; Del Re, D.; Di Marco, E.; Diemoz, M.; Gelli, S.; Longo, E.; Margaroli, F.; Marzocchi, B.; Meridiani, P.; Organtini, G.; Paramatti, R.; Preiato, F.; Rahatlou, S.; Rovelli, C.; Santanastasio, F.; Amapane, N.; Arcidiacono, R.; Argiro, S.; Arneodo, M.; Bartosik, N.; Bellan, R.; Biino, C.; Cartiglia, N.; Cenna, F.; Costa, M.; Covarelli, R.; Degano, A.; Demaria, N.; Kiani, B.; Mariotti, C.; Maselli, S.; Migliore, E.; Monaco, V.; Monteil, E.; Monteno, M.; Obertino, M. M.; Pacher, L.; Pastrone, N.; Pelliccioni, M.; Pinna Angioni, G. L.; Ravera, F.; Romero, A.; Ruspa, M.; Sacchi, R.; Shchelina, K.; Sola, V.; Solano, A.; Staiano, A.; Traczyk, P.; Belforte, S.; Casarsa, M.; Cossutti, F.; Della Ricca, G.; Zanetti, A.; Kim, D. H.; Kim, G. N.; Kim, M. S.; Lee, J.; Lee, S.; Lee, S. W.; Moon, C. S.; Oh, Y. D.; Sekmen, S.; Son, D. C.; Yang, Y. C.; Lee, A.; Kim, H.; Moon, D. H.; Oh, G.; Brochero Cifuentes, J. A.; Goh, J.; Kim, T. J.; Cho, S.; Choi, S.; Go, Y.; Gyun, D.; Ha, S.; Hong, B.; Jo, Y.; Kim, Y.; Lee, K.; Lee, K. S.; Lee, S.; Lim, J.; Park, S. K.; Roh, Y.; Almond, J.; Kim, J.; Kim, J. S.; Lee, H.; Lee, K.; Nam, K.; Oh, S. B.; Radburn-Smith, B. C.; Seo, S. h.; Yang, U. K.; Yoo, H. D.; Yu, G. B.; Choi, M.; Kim, H.; Kim, J. H.; Lee, J. S. H.; Park, I. C.; Choi, Y.; Hwang, C.; Lee, J.; Yu, I.; Dudenas, V.; Juodagalvis, A.; Vaitkus, J.; Ahmed, I.; Ibrahim, Z. A.; Md Ali, M. A. B.; Mohamad Idris, F.; Wan Abdullah, W. A. T.; Yusli, M. N.; Zolkapli, Z.; Reyes-Almanza, R.; Ramirez-Sanchez, G.; Duran-Osuna, M. C.; Castilla-Valdez, H.; De La Cruz-Burelo, E.; Heredia-De La Cruz, I.; Rabadan-Trejo, R. I.; Lopez-Fernandez, R.; Mejia Guisao, J.; Sanchez-Hernandez, A.; Carrillo Moreno, S.; Oropeza Barrera, C.; Vazquez Valencia, F.; Pedraza, I.; Salazar Ibarguen, H. A.; Uribe Estrada, C.; Morelos Pineda, A.; Krofcheck, D.; Butler, P. H.; Ahmad, A.; Ahmad, M.; Hassan, Q.; Hoorani, H. R.; Saddique, A.; Shah, M. A.; Shoaib, M.; Waqas, M.; Bialkowska, H.; Bluj, M.; Boimska, B.; Frueboes, T.; Górski, M.; Kazana, M.; Nawrocki, K.; Szleper, M.; Zalewski, P.; Bunkowski, K.; Byszuk, A.; Doroba, K.; Kalinowski, A.; Konecki, M.; Krolikowski, J.; Misiura, M.; Olszewski, M.; Pyskir, A.; Walczak, M.; Bargassa, P.; Beirão Da Cruz E Silva, C.; Di Francesco, A.; Faccioli, P.; Galinhas, B.; Gallinaro, M.; Hollar, J.; Leonardo, N.; Lloret Iglesias, L.; Nemallapudi, M. V.; Seixas, J.; Strong, G.; Toldaiev, O.; Vadruccio, D.; Varela, J.; Afanasiev, S.; Bunin, P.; Gavrilenko, M.; Golutvin, I.; Gorbunov, I.; Kamenev, A.; Karjavin, V.; Lanev, A.; Malakhov, A.; Matveev, V.; Palichik, V.; Perelygin, V.; Shmatov, S.; Shulha, S.; Skatchkov, N.; Smirnov, V.; Voytishin, N.; Zarubin, A.; Ivanov, Y.; Kim, V.; Kuznetsova, E.; Levchenko, P.; Murzin, V.; Oreshkin, V.; Smirnov, I.; Sulimov, V.; Uvarov, L.; Vavilov, S.; Vorobyev, A.; Andreev, Yu.; Dermenev, A.; Gninenko, S.; Golubev, N.; Karneyeu, A.; Kirsanov, M.; Krasnikov, N.; Pashenkov, A.; Tlisov, D.; Toropin, A.; Epshteyn, V.; Gavrilov, V.; Lychkovskaya, N.; Popov, V.; Pozdnyakov, I.; Safronov, G.; Spiridonov, A.; Stepennov, A.; Toms, M.; Vlasov, E.; Zhokin, A.; Aushev, T.; Bylinkin, A.; Chadeeva, M.; Markin, O.; Parygin, P.; Philippov, D.; Polikarpov, S.; Rusinov, V.; Andreev, V.; Azarkin, M.; Dremin, I.; Kirakosyan, M.; Terkulov, A.; Baskakov, A.; Belyaev, A.; Boos, E.; Bunichev, V.; Dubinin, M.; Dudko, L.; Ershov, A.; Gribushin, A.; Klyukhin, V.; Kodolova, O.; Lokhtin, I.; Miagkov, I.; Obraztsov, S.; Petrushanko, S.; Savrin, V.; Blinov, V.; Skovpen, Y.; Shtol, D.; Azhgirey, I.; Bayshev, I.; Bitioukov, S.; Elumakhov, D.; Kachanov, V.; Kalinin, A.; Konstantinov, D.; Petrov, V.; Ryutin, R.; Sobol, A.; Troshin, S.; Tyurin, N.; Uzunian, A.; Volkov, A.; Adzic, P.; Cirkovic, P.; Devetak, D.; Dordevic, M.; Milosevic, J.; Rekovic, V.; Alcaraz Maestre, J.; Barrio Luna, M.; Cerrada, M.; Colino, N.; De La Cruz, B.; Delgado Peris, A.; Escalante Del Valle, A.; Fernandez Bedoya, C.; Fernández Ramos, J. P.; Flix, J.; Fouz, M. C.; Garcia-Abia, P.; Gonzalez Lopez, O.; Goy Lopez, S.; Hernandez, J. M.; Josa, M. I.; Moran, D.; Pérez-Calero Yzquierdo, A.; Puerta Pelayo, J.; Quintario Olmeda, A.; Redondo, I.; Romero, L.; Soares, M. S.; Álvarez Fernández, A.; de Trocóniz, J. F.; Missiroli, M.; Cuevas, J.; Erice, C.; Fernandez Menendez, J.; Gonzalez Caballero, I.; González Fernández, J. R.; Palencia Cortezon, E.; Sanchez Cruz, S.; Vischia, P.; Vizan Garcia, J. M.; Cabrillo, I. J.; Calderon, A.; Chazin Quero, B.; Curras, E.; Duarte Campderros, J.; Fernandez, M.; Garcia-Ferrero, J.; Gomez, G.; Lopez Virto, A.; Marco, J.; Martinez Rivero, C.; Martinez Ruiz del Arbol, P.; Matorras, F.; Piedra Gomez, J.; Rodrigo, T.; Ruiz-Jimeno, A.; Scodellaro, L.; Trevisani, N.; Vila, I.; Vilar Cortabitarte, R.; Abbaneo, D.; Auffray, E.; Baillon, P.; Ball, A. H.; Barney, D.; Bianco, M.; Bloch, P.; Bocci, A.; Botta, C.; Camporesi, T.; Castello, R.; Cepeda, M.; Cerminara, G.; Chapon, E.; Chen, Y.; d'Enterria, D.; Dabrowski, A.; Daponte, V.; David, A.; De Gruttola, M.; De Roeck, A.; Dobson, M.; Dorney, B.; du Pree, T.; Dünser, M.; Dupont, N.; Elliott-Peisert, A.; Everaerts, P.; Fallavollita, F.; Franzoni, G.; Fulcher, J.; Funk, W.; Gigi, D.; Gill, K.; Glege, F.; Gulhan, D.; Harris, P.; Hegeman, J.; Innocente, V.; Janot, P.; Karacheban, O.; Kieseler, J.; Kirschenmann, H.; Knünz, V.; Kornmayer, A.; Kortelainen, M. J.; Krammer, M.; Lange, C.; Lecoq, P.; Lourenço, C.; Lucchini, M. T.; Malgeri, L.; Mannelli, M.; Martelli, A.; Meijers, F.; Merlin, J. A.; Mersi, S.; Meschi, E.; Milenovic, P.; Moortgat, F.; Mulders, M.; Neugebauer, H.; Orfanelli, S.; Orsini, L.; Pape, L.; Perez, E.; Peruzzi, M.; Petrilli, A.; Petrucciani, G.; Pfeiffer, A.; Pierini, M.; Racz, A.; Reis, T.; Rolandi, G.; Rovere, M.; Sakulin, H.; Schäfer, C.; Schwick, C.; Seidel, M.; Selvaggi, M.; Sharma, A.; Silva, P.; Sphicas, P.; Stakia, A.; Steggemann, J.; Stoye, M.; Tosi, M.; Treille, D.; Triossi, A.; Tsirou, A.; Veckalns, V.; Verweij, M.; Zeuner, W. D.; Bertl, W.; Caminada, L.; Deiters, K.; Erdmann, W.; Horisberger, R.; Ingram, Q.; Kaestli, H. C.; Kotlinski, D.; Langenegger, U.; Rohe, T.; Wiederkehr, S. A.; Bachmair, F.; Bäni, L.; Berger, P.; Bianchini, L.; Casal, B.; Dissertori, G.; Dittmar, M.; Donegà, M.; Grab, C.; Heidegger, C.; Hits, D.; Hoss, J.; Kasieczka, G.; Klijnsma, T.; Lustermann, W.; Mangano, B.; Marionneau, M.; Meinhard, M. 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R.; Olmedo Negrete, M.; Paneva, M. I.; Shrinivas, A.; Si, W.; Wang, L.; Wei, H.; Wimpenny, S.; Yates, B. R.; Branson, J. G.; Cittolin, S.; Derdzinski, M.; Gerosa, R.; Hashemi, B.; Holzner, A.; Klein, D.; Kole, G.; Krutelyov, V.; Letts, J.; Macneill, I.; Masciovecchio, M.; Olivito, D.; Padhi, S.; Pieri, M.; Sani, M.; Sharma, V.; Simon, S.; Tadel, M.; Vartak, A.; Wasserbaech, S.; Wood, J.; Würthwein, F.; Yagil, A.; Zevi Della Porta, G.; Amin, N.; Bhandari, R.; Bradmiller-Feld, J.; Campagnari, C.; Dishaw, A.; Dutta, V.; Franco Sevilla, M.; George, C.; Golf, F.; Gouskos, L.; Gran, J.; Heller, R.; Incandela, J.; Mullin, S. D.; Ovcharova, A.; Qu, H.; Richman, J.; Stuart, D.; Suarez, I.; Yoo, J.; Anderson, D.; Bendavid, J.; Bornheim, A.; Lawhorn, J. M.; Newman, H. B.; Nguyen, T.; Pena, C.; Spiropulu, M.; Vlimant, J. R.; Xie, S.; Zhang, Z.; Zhu, R. Y.; Andrews, M. B.; Ferguson, T.; Mudholkar, T.; Paulini, M.; Russ, J.; Sun, M.; Vogel, H.; Vorobiev, I.; Weinberg, M.; Cumalat, J. P.; Ford, W. T.; Jensen, F.; Johnson, A.; Krohn, M.; Leontsinis, S.; Mulholland, T.; Stenson, K.; Wagner, S. R.; Alexander, J.; Chaves, J.; Chu, J.; Dittmer, S.; Mcdermott, K.; Mirman, N.; Patterson, J. R.; Rinkevicius, A.; Ryd, A.; Skinnari, L.; Soffi, L.; Tan, S. M.; Tao, Z.; Thom, J.; Tucker, J.; Wittich, P.; Zientek, M.; Abdullin, S.; Albrow, M.; Apollinari, G.; Apresyan, A.; Apyan, A.; Banerjee, S.; Bauerdick, L. A. T.; Beretvas, A.; Berryhill, J.; Bhat, P. C.; Bolla, G.; Burkett, K.; Butler, J. N.; Canepa, A.; Cerati, G. B.; Cheung, H. W. K.; Chlebana, F.; Cremonesi, M.; Duarte, J.; Elvira, V. D.; Freeman, J.; Gecse, Z.; Gottschalk, E.; Gray, L.; Green, D.; Grünendahl, S.; Gutsche, O.; Harris, R. M.; Hasegawa, S.; Hirschauer, J.; Hu, Z.; Jayatilaka, B.; Jindariani, S.; Johnson, M.; Joshi, U.; Klima, B.; Kreis, B.; Lammel, S.; Lincoln, D.; Lipton, R.; Liu, M.; Liu, T.; Lopes De Sá, R.; Lykken, J.; Maeshima, K.; Magini, N.; Marraffino, J. M.; Maruyama, S.; Mason, D.; McBride, P.; Merkel, P.; Mrenna, S.; Nahn, S.; O'Dell, V.; Pedro, K.; Prokofyev, O.; Rakness, G.; Ristori, L.; Schneider, B.; Sexton-Kennedy, E.; Soha, A.; Spalding, W. J.; Spiegel, L.; Stoynev, S.; Strait, J.; Strobbe, N.; Taylor, L.; Tkaczyk, S.; Tran, N. V.; Uplegger, L.; Vaandering, E. W.; Vernieri, C.; Verzocchi, M.; Vidal, R.; Wang, M.; Weber, H. A.; Whitbeck, A.; Acosta, D.; Avery, P.; Bortignon, P.; Bourilkov, D.; Brinkerhoff, A.; Carnes, A.; Carver, M.; Curry, D.; Field, R. D.; Furic, I. K.; Konigsberg, J.; Korytov, A.; Kotov, K.; Ma, P.; Matchev, K.; Mei, H.; Mitselmakher, G.; Rank, D.; Sperka, D.; Terentyev, N.; Thomas, L.; Wang, J.; Wang, S.; Yelton, J.; Joshi, Y. R.; Linn, S.; Markowitz, P.; Rodriguez, J. L.; Ackert, A.; Adams, T.; Askew, A.; Hagopian, S.; Hagopian, V.; Johnson, K. F.; Kolberg, T.; Martinez, G.; Perry, T.; Prosper, H.; Saha, A.; Santra, A.; Sharma, V.; Yohay, R.; Baarmand, M. M.; Bhopatkar, V.; Colafranceschi, S.; Hohlmann, M.; Noonan, D.; Roy, T.; Yumiceva, F.; Adams, M. R.; Apanasevich, L.; Berry, D.; Betts, R. R.; Cavanaugh, R.; Chen, X.; Evdokimov, O.; Gerber, C. E.; Hangal, D. A.; Hofman, D. J.; Jung, K.; Kamin, J.; Sandoval Gonzalez, I. D.; Tonjes, M. B.; Trauger, H.; Varelas, N.; Wang, H.; Wu, Z.; Zhang, J.; Bilki, B.; Clarida, W.; Dilsiz, K.; Durgut, S.; Gandrajula, R. P.; Haytmyradov, M.; Khristenko, V.; Merlo, J.-P.; Mermerkaya, H.; Mestvirishvili, A.; Moeller, A.; Nachtman, J.; Ogul, H.; Onel, Y.; Ozok, F.; Penzo, A.; Snyder, C.; Tiras, E.; Wetzel, J.; Yi, K.; Blumenfeld, B.; Cocoros, A.; Eminizer, N.; Fehling, D.; Feng, L.; Gritsan, A. V.; Maksimovic, P.; Roskes, J.; Sarica, U.; Swartz, M.; Xiao, M.; You, C.; Al-bataineh, A.; Baringer, P.; Bean, A.; Boren, S.; Bowen, J.; Castle, J.; Khalil, S.; Kropivnitskaya, A.; Majumder, D.; Mcbrayer, W.; Murray, M.; Royon, C.; Sanders, S.; Schmitz, E.; Tapia Takaki, J. D.; Wang, Q.; Ivanov, A.; Kaadze, K.; Maravin, Y.; Mohammadi, A.; Saini, L. K.; Skhirtladze, N.; Toda, S.; Rebassoo, F.; Wright, D.; Anelli, C.; Baden, A.; Baron, O.; Belloni, A.; Calvert, B.; Eno, S. C.; Ferraioli, C.; Hadley, N. J.; Jabeen, S.; Jeng, G. Y.; Kellogg, R. G.; Kunkle, J.; Mignerey, A. C.; Ricci-Tam, F.; Shin, Y. H.; Skuja, A.; Tonwar, S. C.; Abercrombie, D.; Allen, B.; Azzolini, V.; Barbieri, R.; Baty, A.; Bi, R.; Brandt, S.; Busza, W.; Cali, I. A.; D'Alfonso, M.; Demiragli, Z.; Gomez Ceballos, G.; Goncharov, M.; Hsu, D.; Iiyama, Y.; Innocenti, G. M.; Klute, M.; Kovalskyi, D.; Lai, Y. S.; Lee, Y.-J.; Levin, A.; Luckey, P. D.; Maier, B.; Marini, A. C.; Mcginn, C.; Mironov, C.; Narayanan, S.; Niu, X.; Paus, C.; Roland, C.; Roland, G.; Salfeld-Nebgen, J.; Stephans, G. S. F.; Tatar, K.; Velicanu, D.; Wang, J.; Wang, T. W.; Wyslouch, B.; Benvenuti, A. C.; Chatterjee, R. M.; Evans, A.; Hansen, P.; Kalafut, S.; Kubota, Y.; Lesko, Z.; Mans, J.; Nourbakhsh, S.; Ruckstuhl, N.; Rusack, R.; Turkewitz, J.; Acosta, J. G.; Oliveros, S.; Avdeeva, E.; Bloom, K.; Claes, D. R.; Fangmeier, C.; Gonzalez Suarez, R.; Kamalieddin, R.; Kravchenko, I.; Monroy, J.; Siado, J. E.; Snow, G. R.; Stieger, B.; Alyari, M.; Dolen, J.; Godshalk, A.; Harrington, C.; Iashvili, I.; Nguyen, D.; Parker, A.; Rappoccio, S.; Roozbahani, B.; Alverson, G.; Barberis, E.; Hortiangtham, A.; Massironi, A.; Morse, D. M.; Nash, D.; Orimoto, T.; Teixeira De Lima, R.; Trocino, D.; Wood, D.; Bhattacharya, S.; Charaf, O.; Hahn, K. A.; Mucia, N.; Odell, N.; Pollack, B.; Schmitt, M. H.; Sung, K.; Trovato, M.; Velasco, M.; Dev, N.; Hildreth, M.; Hurtado Anampa, K.; Jessop, C.; Karmgard, D. J.; Kellams, N.; Lannon, K.; Loukas, N.; Marinelli, N.; Meng, F.; Mueller, C.; Musienko, Y.; Planer, M.; Reinsvold, A.; Ruchti, R.; Smith, G.; Taroni, S.; Wayne, M.; Wolf, M.; Woodard, A.; Alimena, J.; Antonelli, L.; Bylsma, B.; Durkin, L. S.; Flowers, S.; Francis, B.; Hart, A.; Hill, C.; Ji, W.; Liu, B.; Luo, W.; Puigh, D.; Winer, B. L.; Wulsin, H. W.; Cooperstein, S.; Driga, O.; Elmer, P.; Hardenbrook, J.; Hebda, P.; Higginbotham, S.; Lange, D.; Luo, J.; Marlow, D.; Mei, K.; Ojalvo, I.; Olsen, J.; Palmer, C.; Piroué, P.; Stickland, D.; Tully, C.; Malik, S.; Norberg, S.; Barker, A.; Barnes, V. E.; Das, S.; Folgueras, S.; Gutay, L.; Jha, M. K.; Jones, M.; Jung, A. W.; Khatiwada, A.; Miller, D. H.; Neumeister, N.; Peng, C. C.; Schulte, J. F.; Sun, J.; Wang, F.; Xie, W.; Cheng, T.; Parashar, N.; Stupak, J.; Adair, A.; Akgun, B.; Chen, Z.; Ecklund, K. M.; Geurts, F. J. M.; Guilbaud, M.; Li, W.; Michlin, B.; Northup, M.; Padley, B. P.; Roberts, J.; Rorie, J.; Tu, Z.; Zabel, J.; Bodek, A.; de Barbaro, P.; Demina, R.; Duh, Y. t.; Ferbel, T.; Galanti, M.; Garcia-Bellido, A.; Han, J.; Hindrichs, O.; Khukhunaishvili, A.; Lo, K. H.; Tan, P.; Verzetti, M.; Ciesielski, R.; Goulianos, K.; Mesropian, C.; Agapitos, A.; Chou, J. P.; Gershtein, Y.; Gómez Espinosa, T. A.; Halkiadakis, E.; Heindl, M.; Hughes, E.; Kaplan, S.; Kunnawalkam Elayavalli, R.; Kyriacou, S.; Lath, A.; Montalvo, R.; Nash, K.; Osherson, M.; Saka, H.; Salur, S.; Schnetzer, S.; Sheffield, D.; Somalwar, S.; Stone, R.; Thomas, S.; Thomassen, P.; Walker, M.; Delannoy, A. G.; Foerster, M.; Heideman, J.; Riley, G.; Rose, K.; Spanier, S.; Thapa, K.; Bouhali, O.; Castaneda Hernandez, A.; Celik, A.; Dalchenko, M.; De Mattia, M.; Delgado, A.; Dildick, S.; Eusebi, R.; Gilmore, J.; Huang, T.; Kamon, T.; Mueller, R.; Pakhotin, Y.; Patel, R.; Perloff, A.; Perniè, L.; Rathjens, D.; Safonov, A.; Tatarinov, A.; Ulmer, K. A.; Akchurin, N.; Damgov, J.; De Guio, F.; Dudero, P. R.; Faulkner, J.; Gurpinar, E.; Kunori, S.; Lamichhane, K.; Lee, S. W.; Libeiro, T.; Peltola, T.; Undleeb, S.; Volobouev, I.; Wang, Z.; Greene, S.; Gurrola, A.; Janjam, R.; Johns, W.; Maguire, C.; Melo, A.; Ni, H.; Padeken, K.; Sheldon, P.; Tuo, S.; Velkovska, J.; Xu, Q.; Arenton, M. W.; Barria, P.; Cox, B.; Hirosky, R.; Joyce, M.; Ledovskoy, A.; Li, H.; Neu, C.; Sinthuprasith, T.; Wang, Y.; Wolfe, E.; Xia, F.; Harr, R.; Karchin, P. E.; Sturdy, J.; Zaleski, S.; Brodski, M.; Buchanan, J.; Caillol, C.; Dasu, S.; Dodd, L.; Duric, S.; Gomber, B.; Grothe, M.; Herndon, M.; Hervé, A.; Hussain, U.; Klabbers, P.; Lanaro, A.; Levine, A.; Long, K.; Loveless, R.; Pierro, G. A.; Polese, G.; Ruggles, T.; Savin, A.; Smith, N.; Smith, W. H.; Taylor, D.; Woods, N.; CMS Collaboration

    2018-04-01

    Results are presented from a search in the dijet final state for new massive narrow resonances decaying to pairs of W and Z bosons or to a W /Z boson and a quark. Results are based on data recorded in proton-proton collisions at √{s }=13 TeV with the CMS detector at the CERN LHC. The data correspond to an integrated luminosity of 35.9 fb-1 . The mass range investigated extends upwards from 1.2 TeV. No excess is observed above the estimated standard model background and limits are set at 95% confidence level on cross sections, which are interpreted in terms of various models that predict gravitons, heavy spin-1 bosons, and excited quarks. In a heavy vector triplet model, W' and Z' resonances, with masses below 3.2 and 2.7 TeV, respectively, and spin-1 resonances with degenerate masses below 3.8 TeV are excluded at 95% confidence level. In the case of a singlet W' resonance masses between 3.3 and 3.6 TeV can be excluded additionally. Similarly, excited quark resonances, q*, decaying to q W and q Z with masses less than 5.0 and 4.7 TeV, respectively, are excluded. In a narrow-width bulk graviton model, upper limits are set on cross sections ranging from 0.6 fb for high resonance masses above 3.6 TeV, to 36.0 fb for low resonance masses of 1.3 TeV.

  17. A Stream Multimetric Macroinvertebrate Index (MMI) for the Sand Hills Ecoregion of the Southeastern Plains, USA

    NASA Astrophysics Data System (ADS)

    Kosnicki, Ely; Sefick, Stephen A.; Paller, Michael H.; Jerrell, Miller S.; Prusha, Blair A.; Sterrett, Sean C.; Tuberville, Tracey D.; Feminella, Jack W.

    2016-10-01

    A macroinvertebrate multimetric index is an effective tool for assessing the biological integrity of streams. However, data collected under a single protocol may not be available for an entire region. We sampled macroinvertebrates from the full extent of the Sand Hills ecoregion Level IV of the Southeastern Plains with a standard protocol during the summers of 2010-2012. We evaluated the performance of 94 metrics through a series of screening criteria and built 48 macroinvertebrate multimetric indexs with combinations of the best performing metrics, representing richness, habit, functional feeding guild, sensitivity, and community composition. A series of narrative-response tests for each macroinvertebrate multimetric index was used to find the best performing macroinvertebrate multimetric index which we called the Sand Hills macroinvertebrate multimetric index. The Sand Hills macroinvertebrate multimetric index consisted of the measures Biotic Index, % Shredder taxa, Clinger taxa2/total taxa, Plecoptera and Trichoptera richness, and Tanytarsini taxa2/Chironomidae taxa. Comparison of the Sand Hills macroinvertebrate multimetric index with existing assessment tools calculated with our data indicated that the Sand Hills macroinvertebrate multimetric index performs at a high level with regard to identifying degraded sites and in its response to stress gradients.

  18. Search for massive resonances decaying into W W , W Z , Z Z , q W , and q Z with dijet final states at s = 13 TeV

    DOE PAGES

    Sirunyan, A. M.; Tumasyan, A.; Adam, W.; ...

    2018-04-10

    Results are presented from a search in the dijet final state for new massive narrow resonances decaying to pairs of W and Z bosons or to a W/Z boson and a quark. Results are based on data recorded in proton-proton collisions at √s = 13 TeV with the CMS detector at the CERN LHC. The data correspond to an integrated luminosity of 35.9 fb -1. The mass range investigated extends upwards from 1.2 TeV. No excess is observed above the estimated standard model background and limits are set at 95% confidence level on cross sections, which are interpreted in termsmore » of various models that predict gravitons, heavy spin-1 bosons, and excited quarks. In a heavy vector triplet model, W' and Z' resonances, with masses below 3.2 and 2.7 TeV, respectively, and spin-1 resonances with degenerate masses below 3.8 TeV are excluded at 95% confidence level. In the case of a singlet W' resonance masses between 3.3 and 3.6 TeV can be excluded additionally. Similarly, excited quark resonances, q*, decaying to qW and qZ with masses less than 5.0 and 4.7 TeV, respectively, are excluded. In a narrow-width bulk graviton model, upper limits are set on cross sections ranging from 0.6 fb for high resonance masses above 3.6 TeV, to 36.0 fb for low resonance masses of 1.3 TeV.« less

  19. Search for massive resonances decaying into W W , W Z , Z Z , q W , and q Z with dijet final states at s = 13 TeV

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Sirunyan, A. M.; Tumasyan, A.; Adam, W.

    Results are presented from a search in the dijet final state for new massive narrow resonances decaying to pairs of W and Z bosons or to a W/Z boson and a quark. Results are based on data recorded in proton-proton collisions at √s = 13 TeV with the CMS detector at the CERN LHC. The data correspond to an integrated luminosity of 35.9 fb -1. The mass range investigated extends upwards from 1.2 TeV. No excess is observed above the estimated standard model background and limits are set at 95% confidence level on cross sections, which are interpreted in termsmore » of various models that predict gravitons, heavy spin-1 bosons, and excited quarks. In a heavy vector triplet model, W' and Z' resonances, with masses below 3.2 and 2.7 TeV, respectively, and spin-1 resonances with degenerate masses below 3.8 TeV are excluded at 95% confidence level. In the case of a singlet W' resonance masses between 3.3 and 3.6 TeV can be excluded additionally. Similarly, excited quark resonances, q*, decaying to qW and qZ with masses less than 5.0 and 4.7 TeV, respectively, are excluded. In a narrow-width bulk graviton model, upper limits are set on cross sections ranging from 0.6 fb for high resonance masses above 3.6 TeV, to 36.0 fb for low resonance masses of 1.3 TeV.« less

  20. Giga-z: A 100,000 OBJECT SUPERCONDUCTING SPECTROPHOTOMETER FOR LSST FOLLOW-UP

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Marsden, Danica W.; Mazin, Benjamin A.; O'Brien, Kieran

    2013-09-15

    We simulate the performance of a new type of instrument, a Superconducting Multi-Object Spectrograph (SuperMOS), that uses microwave kinetic inductance detectors (MKIDs). MKIDs, a new detector technology, feature good quantum efficiency in the UVOIR, can count individual photons with microsecond timing accuracy, and, like X-ray calorimeters, determine their energy to several percent. The performance of Giga-z, a SuperMOS designed for wide field imaging follow-up observations, is evaluated using simulated observations of the COSMOS mock catalog with an array of 100,000 R{sub 423{sub nm}} = E/{Delta}E = 30 MKID pixels. We compare our results against a simultaneous simulation of LSST observations.more » In 3 yr on a dedicated 4 m class telescope, Giga-z could observe Almost-Equal-To 2 billion galaxies, yielding a low-resolution spectral energy distribution spanning 350-1350 nm for each; 1000 times the number measured with any currently proposed LSST spectroscopic follow-up, at a fraction of the cost and time. Giga-z would provide redshifts for galaxies up to z Almost-Equal-To 6 with magnitudes m{sub i} {approx}< 25, with accuracy {sigma}{sub {Delta}z/(1+z)} Almost-Equal-To 0.03 for the whole sample, and {sigma}{sub {Delta}z/(1+z)} Almost-Equal-To 0.007 for a select subset. We also find catastrophic failure rates and biases that are consistently lower than for LSST. The added constraint on dark energy parameters for WL + CMB by Giga-z using the FoMSWG default model is equivalent to multiplying the LSST Fisher matrix by a factor of {alpha} = 1.27 (w{sub p} ), 1.53 (w{sub a} ), or 1.98 ({Delta}{gamma}). This is equivalent to multiplying both the LSST coverage area and the training sets by {alpha} and reducing all systematics by a factor of 1/{radical}({alpha}), advantages that are robust to even more extreme models of intrinsic alignment.« less