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1
Binding capacity of in vitro deglycosylated IgA1 to human mesangial cells.
2006-01-25

IgA nephropathy (IgAN) is the most common glomerular disease and it is characterized by deposition of IgA1 molecules in mesangium. Recent studies had demonstrated that serum and mesangial IgA1 in IgAN were deglycosylated and IgA1 could bind to human mesangial cells (HMC) through a novel receptor. The aim of the current study is to ...

PubMed

2
Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site.
2006-09-21

The human immunodeficiency virus, type 1, Tat protein plays a key role in virus multiplication. Because of its apoptotic property, its production is highly controlled. It depends upon the A3 splicing site utilization. A key control of site A3 activity is the ESS2 splicing silencer, which is located within the long stem-loop structure 3 (SLS3), far ...

PubMed

3
The substrate specificity of SARS coronavirus 3C-like proteinase Keqiang Fan a,1

and that of Glu-166 of the enzyme is helpful for substrate binding. This result suggests that an addi- tional in the enzyme is critical for substrate recognition and binding [3,4]. Mutation of Gln-P1 to Glu or Asn is tol of TGEV 3C-like proteinase indicates that the substrate binds in the shallow sub- ...

E-print Network

4
Selection of Alternative 5? Splice Sites: Role of U1 snRNP and Models for the Antagonistic Effects of SF2/ASF and hnRNP A1
2000-11-01

The first component known to recognize and discriminate among potential 5? splice sites (5?SSs) in pre-mRNA is the U1 snRNP. However, the relative levels of U1 snRNP binding to alternative 5?SSs do not necessarily determine the splicing outcome. Strikingly, SF2/ASF, one of the essential SR protein-splicing factors, causes a dose-dependent shift in splicing ...

PubMed Central

5
Energetics of ligand binding to human glutathione transferase A1-1: Tyr-9 associated localisation of the C-terminal helix is ligand-dependent.
2011-04-12

A C-terminal helix (?9) adjacent to the active site on each subunit is a structural feature unique to the alpha isoform of glutathione transferases which contributes to the catalytic and ligandin functions of the enzyme. The ionisation state of Tyr-9, a residue critical to catalysis, influences ?9 dynamics, although the mechanism is poorly understood. In this study, isothermal ...

PubMed

6
Oncocidin A1: a novel tubulin-binding drug with antitumor activity against human breast and ovarian carcinoma xenografts in nude mice.
1998-09-01

We identified a structural analog of thyroid hormone, methyl-3,5-diiodo-4-(4'-methoxyphenoxy) benzoate (Oncocidin A1), that inhibits human carcinoma cell proliferation and the growth of human breast (MDA MB-231) and ovarian (OVCAR-3) carcinoma xenografts in nude mice. This novel antitumor agent is orally bioavailable and well tolerated by animals. Exposure ...

PubMed

7
Membrane-Induced Folding and Structure of Membrane-Bound Annexin A1 N-Terminal Peptides: Implications for Annexin-Induced Membrane Aggregation?
2008-03-01

Annexins constitute a family of calcium-dependent membrane-binding proteins and can be classified into two groups, depending on the length of the N-terminal domain unique for each individual annexin. The N-terminal domain of annexin A1 can adopt an ?-helical conformation and has been implicated in mediating the membrane aggregation ...

PubMed Central

8
Synergistic stimulation of HIV-1 rev-dependent export of unspliced mRNA to the cytoplasm by hnRNP A1.
1999-02-01

The structural and accessory proteins of human immunodeficiency virus type 1 are expressed by unspliced or partially spliced mRNAs. Efficient transport of these mRNAs from the nucleus requires the binding of the viral nuclear transport protein Rev to an RNA stem-loop structure called the RRE (Rev response element). However, the RRE does not permit Rev to stimulate the export ...

PubMed

9
Characterization of kappa opioid binding using dynorphin A1-13 and U69,593 in the rat brain
1990-05-01

Previous studies of kappa opioid binding sites have suggested heterogeneous binding to this class of opioid receptors. To further investigate kappa receptor heterogeneity, we analyzed the binding properties of various kappa-selective ligands in rat brain homogenates. Displacement assays were carried out using ...

Energy Citations Database

10
Cleavage of a recombinant human immunoglobulin A2 (IgA2)-IgA1 hybrid antibody by certain bacterial IgA1 proteases.
2000-02-01

To understand more about the factors influencing the cleavage of immunoglobulin A1 (IgA1) by microbial IgA1 proteases, a recombinant human IgA2/IgA1 hybrid molecule was generated. In the hybrid, termed ...

PubMed

11
A QSAR for steroidal compound interaction with cytochrome P4501A1
1995-04-01

The well-known binding and metabolism of polycyclic aromatic hydrocarbons (PAHs) by cytochrome P4501A1 has led to a proposed metabolic specialization of P4501A1 to endogenous hormones. To assess this hypothesis, the binding affinities of nine steroidal molecules of increasing multiple bond content and the aromatic ...

Energy Citations Database

12
Isolation and Characterization of Glutathione S-Transferase Isozymes from Sorghum1
1998-07-01

Two glutathione S-transferase (GST) isozymes, A1/A1 and B1/B2, were purified from etiolated, O-1,3-dioxolan-2-yl-methyl-2,2,2,-trifluoro-4?-chloroacetophenone-oxime-treated sorghum (Sorghum bicolor L. Moench) shoots. GST A1/A1, ...

PubMed Central

13
Binding Properties of the N-Acetylglucosamine and High-Mannose N-Glycan PP2-A1 Phloem Lectin in Arabidopsis[W]
2010-07-04

Phloem Protein2 (PP2) is a component of the phloem protein bodies found in sieve elements. We describe here the lectin properties of the Arabidopsis (Arabidopsis thaliana) PP2-A1. Using a recombinant protein produced in Escherichia coli, we demonstrated binding to N-acetylglucosamine oligomers. Glycan array screening showed that PP2-A1 ...

PubMed Central

14
Deciphering the binding mode of Zolpidem to GABA(A) ? (1) receptor - insights from molecular dynamics simulation.
2011-07-01

To investigate the binding mode of Zolpidem to GABA(A) and to delineate the conformational changes induced upon agonist binding, we carried out atomistic molecular dynamics simulation using the ligand binding domain of GABA(A) ?(1) receptor. Comparative molecular dynamics simulation of the apo ...

PubMed

15
Engineered improvements in DNA-binding function of the MATa1 homeodomain reveal structural changes involved in combinatorial control.
2002-02-15

We have engineered enhanced DNA-binding function into the a1 homeodomain by making changes in a loop distant from the DNA-binding surface. Comparison of the free and bound a1 structures suggested a mechanism linking van der Waals stacking changes in this loop to the ordering of a final turn in the ...

PubMed

16
Glucagon and cAMP inhibit cholesterol 7alpha-hydroxylase (CYP7A1) gene expression in human hepatocytes: discordant regulation of bile acid synthesis and gluconeogenesis.
2006-01-01

The gene encoding cholesterol 7alpha-hydroxylase (CYP7A1) is tightly regulated to control bile acid synthesis and maintain lipid homeostasis. Recent studies in mice suggest that bile acid synthesis is regulated by the fasted-to-fed cycle, and fasting induces CYP7A1 gene expression in parallel to the induction of ...

PubMed

17
Simple, recurring RNA binding sites for L-arginine
2010-04-01

Seven new arginine binding motifs have been selected from a heterogeneous RNA pool containing 17, 25, and 50mer randomized tracts, yielding 131 independently derived binding sites that are multiply isolated. The shortest 17mer random region is sufficient to build varied arginine binding sites ...

PubMed Central

18
Modifying murine von Willebrand factor A1 domain for in vivo assessment of human platelet therapies.
2007-12-16

The A1 domain of von Willebrand factor (VWF-A1) plays a crucial role in hemostasis and thrombosis by initiating platelet adhesion at sites of arterial injury through interactions with the platelet receptor glycoprotein Ib alpha (GPIbalpha). Here we report that murine VWF-A1 supports limited ...

PubMed

19
Insulin binding to human B lymphoblasts is a function of HLA haplotype.
1987-03-01

A variety of genetic and biochemical evidence points to an association between major histocompatibility complex (MHC) haplotype and several types of cell surface receptors including epidermal growth factor and insulin receptors. We report evidence for such associations between human class I MHC antigens, HLA antigens, and specific insulin binding sites on ...

PubMed Central

20
The roles of the C-terminal domain and type III domains of chitinase A1 from Bacillus circulans WL-12 in chitin degradation.
1994-08-01

The mature form of chitinase A1 from Bacillus circulans WL-12 comprises a C-terminal domain, two type III modules (domains), and a large N-terminal domain which contains the catalytic site of the enzyme. In order to better define the roles of these chitinase domains in chitin degradation, modified chiA genes encoding various deletions ...

PubMed Central

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21
SMN2 exon 7 splicing is inhibited by binding of hnRNP A1 to a common ESS motif that spans the 3' splice site.
2011-01-25

Spinal Muscular Atrophy is caused by homozygous loss of SMN1 with phenotypic modulation by SMN2. SMN2 expresses only limited amounts of full-length transcript due to skipping of exon 7 caused by disruption of an SF2/ASF binding ESE. Additionally, hnRNP A1 has been reported to inhibit inclusion of SMN2 exon 7. We previously reported ...

PubMed

22
hnRNP A1 and hnRNP H can collaborate to modulate 5? splice site selection
2010-01-01

The mammalian proteins hnRNP A1 and hnRNP H control many splicing decisions in viral and cellular primary transcripts. To explain some of these activities, we have proposed that self-interactions between bound proteins create an RNA loop that represses internal splice sites while simultaneously activating the external ...

PubMed Central

23
FoxA1 binding to the MMTV LTR modulates chromatin structure and transcription.
2004-12-30

Novel binding sites for the forkhead transcription factor family member Forkhead box A (FoxA), previously referred to as Hepatocyte Nuclear Factor 3 (HNF3), were found within the mouse mammary tumor virus long terminal repeat (MMTV LTR). The effect of FoxA1 on MMTV LTR chromatin structure, and expression was evaluated in Xenopus laevis oocytes. Mutagenesis ...

PubMed

24
FoxA1 binding to the MMTV LTR modulates chromatin structure and transcription
2005-04-01

Novel binding sites for the forkhead transcription factor family member Forkhead box A (FoxA), previously referred to as Hepatocyte Nuclear Factor 3 (HNF3), were found within the mouse mammary tumor virus long terminal repeat (MMTV LTR). The effect of FoxA1 on MMTV LTR chromatin structure, and expression was evaluated in Xenopus laevis oocytes. Mutagenesis ...

Energy Citations Database

25
Pentylenetetrazole-induced seizures affect binding site densities for GABA, glutamate and adenosine receptors in the rat brain.
2009-04-05

Pentylenetetrazole (PTZ) is a convulsant used to model epileptic seizures in rats. In the PTZ-model, altered heat shock protein 27 (HSP-27) expression highlights seizure-affected astrocytes, which play an important role in glutamate and GABA metabolism. This raises the question whether impaired neurotransmitter metabolism leads to an imbalance in neurotransmitter receptor expression. Consequently, ...

PubMed

26
Antibody Purification AntibodyPurification

S � IgE M NB M S � IgA W NB W S M IgA1 W NB W S M IgA2 W NB W S M Fab W W W S M ScFv W NB W S M Mouse, and five IgG-binding sites are included, resulting in a mass of 44.6 kDa.Some researchers believe weakly to Fab fragments.1 Native Protein G contains two immunoglobulin-binding ...

E-print Network

27
Prostaglandin E and F2 alpha receptors in human myometrium during the menstrual cycle and in pregnancy and labor
1985-12-15

The binding of prostaglandins E1 and F2 alpha has been studied in the human myometrium and cervix during the menstrual cycle and in the myometrium of pregnant patients at term before and during labor. Tritium-labeled prostaglandin E1 and F2 alpha binding was saturable and reversible. Scatchard analysis of tritium-labeled prostaglandin E1 ...

Energy Citations Database

28
Analysis of binding of a technetium-99m-labeled monoclonal antibody to lentivirus-infected cells
1990-11-01

Caprine arthritis-encephalitis (CAE) is a model for the study of lentiviral infections. The authors' hypothesis is that radioimmunodetection has the potential to detect lentiviral proteins at the surface of infected cells. A monoclonal antibody (CAEV92A1) specific for a CAE virus (CAEV)-associated glycoprotein and a control antibody were ...

Energy Citations Database

29
O-glycosylation of serum IgA1 antibodies against mucosal and systemic antigens in IgA nephropathy.
2006-11-08

In IgA nephropathy (IgAN), serum IgA1 with abnormal O-glycosylation deposits in the glomerular mesangium. The underlying mechanism of this IgA1 O-glycosylation abnormality is poorly understood, but recent evidence argues against a generic defect in B cell glycosyltransferases, suggesting that only a subpopulation of IgA1-committed B cells are affected. For ...

PubMed

30
A new type of NtrC transcriptional activator.
1994-10-01

The enteric NtrC (NRI) protein has been the paradigm for a class of bacterial enhancer-binding proteins (EBPs) that activate transcription of RNA polymerase containing the sigma 54 factor. Activators in the NtrC class are characterized by essentially three properties: (i) they bind to sites distant from the promoters that they activate ...

PubMed Central

31
FTIR Difference Spectroscopy for the Study of Photosystem I A1 Acceper
2009-11-01

Photosystem I (PS I) is a protein complex which carries out light-induced charge separation in oxygenic photosynthesis. Phylloquinone acts as the secondary electron acceptor in PS I. The A1accepter is of interest because it has the lowest reduction potential of any quinone found in nature. In MenB mutant PS I particles from Synechocystis sp. 6803, a plastoquinone-9 molecule occupies the A1 ...

NASA Astrophysics Data System (ADS)

32
RUNX2 contributes to murine COL10A1 gene regulation through direct interaction with its cis-enhancer.
2011-09-01

We have recently shown that a 150-bp Col10a1 distal promoter (-4296 to -4147 bp) is sufficient to direct hypertrophic chondrocyte-specific reporter (LacZ) expression in vivo. More recently, through detailed sequence analysis we identified two putative tandem-repeat Runx2 binding sites within the 3'-end of this ...

PubMed

33
Isolation and characterization of the CYP17A1 gene and its processed pseudogene in Rana rugosa.
2011-06-02

CYP17A1 expression is up-regulated in the gonad in Rana (Glandirana) rugosa tadpoles treated with androgens to induce female-to-male sex-reversal. In this study, we isolated the CYP17A1 gene and its processed pseudogene from R. rugosa. The former was found to consist of 8 exons, and the latter a single-exon gene, designated ...

PubMed

34
The Structure of the Iron Binding Protein, FutA1, from Synechocystis 6803*
2007-09-14

Cyanobacteria account for a significant percentage of aquatic primary productivity even in areas where the concentrations of essential micronutrients are extremely low. To better understand the mechanism of iron selectivity and transport, the structure of the solute-binding domain of an ABC iron transporter, FutA1, was determined in ...

Energy Citations Database

35
S100A1 and Calmodulin Compete for the Same Binding Site on Ryanodine Receptor*
2008-09-26

In heart and skeletal muscle an S100 protein family member, S100A1, binds to the ryanodine receptor (RyR) and promotes Ca2+ release. Using competition binding assays, we further characterized this system in skeletal muscle and showed that Ca2+-S100A1 competes with ...

PubMed Central

36
Identification, cloning, and sequencing of the immunoglobulin A1 protease gene of Streptococcus pneumoniae.
1996-10-01

The pneumococcus expresses a protease that hydrolyzes human immunoglobulin A1 (IgA1). A gene for IgA1 protease was identified from a plasmid library of pneumococcal DNA because of the effect of its overexpression on the colony morphology of Streptococcus pneumoniae. The deduced 1,964-amino-acid sequence is highly ...

PubMed Central

37
Selectin-Like Kinetics and Biomechanics Promote Rapid Platelet Adhesion in Flow: The GPIb -vWF Tether Bond

WD), a bleeding disorder that is due to the spontaneous binding of plasma vWF to circulating platelets of adhesion molecules, whereas platelets utilize a receptor that is a member of the leucine-rich motif family factor (vWF-A1). vWF is a multimeric plasma glycoprotein that supports platelet adhe- sion at sites

E-print Network

38
Lipoprotein marker for hypertriglyceridemia
1986-01-01

Methods and compositions are provided for the detection of a particular low density lipoprotein which has been found to be a marker for patients suffering from type IV hypertriglyceridemia. A monoclonal antibody capable of specifically binding to a characteristic epitopic site on this LDL subspecies can be utilized in a wide variety of immunoassays. ...

DOE Information Bridge

39
1983 4 1 2006 3 31 A-1)

and Substrate Binding Properties of Heme-Containing Aldoxime Dehydratases, OxdB and OxdRe," J. Inorg. Biochem, "Raman Evidence for Specific Substrate-Induced Structural Changes in the Heme Pocket of Human Cytochrome the Relationship of CoralAllene Oxide Synthase to Catalase: A SingleActive Site Mutation That Induces Catalase

E-print Network

40
Carcinogenic heavy metals, As3+ and Cr6+, increase affinity of nuclear mono-ubiquitinated annexin A1 for DNA containing 8-oxo-guanosine, and promote translesion DNA synthesis.
2011-02-18

To elucidate the biological roles of mono-ubiquitinated annexin A1 in nuclei, we investigated the interaction of purified nuclear mono-ubiquitinated annexin A1 with intact and oxidatively damaged DNA. We synthesized the 80mer 5'-GTCCACTATTAAAGAACGTGGACTCCAACGTCAAAGGGCGAAAAACCGTCTATCAGGGCGATGGCCCACTACGTGAACCA-3' ...

PubMed

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41
Alpha 2-adrenergic receptor turnover in adipose tissue and kidney: irreversible blockade of alpha 2-adrenergic receptors by benextramine
1987-01-01

The recovery of post- and extrasynaptic alpha 2-adrenergic receptor-binding sites was studied in vivo in male golden hamsters after treatment with an irreversible alpha-adrenoceptor antagonist benextramine, a tetramine disulfide that possesses a high affinity for alpha 2-binding sites. The kidney alpha 2-adrenergic ...

Energy Citations Database

42
Electronic structure of the quinone radical anion A1*- of photosystem I investigated by advanced pulse EPR and ENDOR techniques.
2009-07-30

Vitamin K1 (VK1) is an important cofactor of the electron-transfer chain in photosystem I (PS I), referred to as A1. The special properties of this quinone result from its unique interaction(s) with the protein surrounding. In particular, a single H-bond to neutral A1 was identified previously in the X-ray crystal structure of PS I. During light-induced ...

PubMed

43
General RNA binding proteins render translation cap dependent.
1996-12-16

Translation in rabbit reticulocyte lysate is relatively independent of the presence of the mRNA m7G cap structure and the cap binding protein, eIF-4E. In addition, initiation occurs frequently at spurious internal sites. Here we show that a critical parameter which contributes to cap-dependent translation is the amount of general RNA ...

PubMed Central

44
The Moraxella adhesin UspA1 binds to its human CEACAM1 receptor by a deformable trimeric coiled-coil
2008-06-18

Moraxella catarrhalis is a ubiquitous human-specific bacterium commonly associated with upper and lower respiratory tract infections, including otitis media, sinusitis and chronic obstructive pulmonary disease. The bacterium uses an autotransporter protein UspA1 to target an important human cellular receptor carcinoembryonic antigen-related cell adhesion ...

PubMed Central

45
Characterization of the binding of a novel nonxanthine adenosine antagonist radioligand, ( sup 3 H)CGS 15943, to multiple affinity states of the adenosine A1 receptor in the rat cortex
1991-01-01

The triazoloquinazoline CGS 15943 is the first reported nonxanthine adenosine antagonist that has high affinity for brain adenosine receptors. In the present study, the binding of (3H) CGS 15943 to recognition sites in rat cortical membranes was characterized. Saturation experiments revealed that (3H)CGS 15943 labeled a single class of recognition ...

Energy Citations Database

46
Phosphoramidate Derivatives Of Hydroxysteroids As Inhibitors Of Prostate-Specific Membrane Antigen
2007-10-30

Prostate-specific membrane antigen (PSMA) is a membrane-bound cell surface peptidase which is over-expressed in prostate cancer cells. The enzymatic activities of PSMA are understood but the role of the enzyme in prostate cancer remains conjectural. We previously confirmed the existence of a hydrophobic binding site remote from the enzyme's catalytic ...

PubMed Central

47
hnRNP A1 Interacts with the 5? Untranslated Regions of Enterovirus 71 and Sindbis Virus RNA and Is Required for Viral Replication?
2009-06-01

Heterogeneous nuclear ribonucleoprotein (hnRNP) A1 is involved in pre-mRNA splicing in the nucleus and translational regulation in the cytoplasm. The cytoplasmic redistribution of hnRNP A1 is a regulated process during viral infection and cellular stress. Here we demonstrate that hnRNP ...

PubMed Central

48
Differential regulation of the human CYP11A1 promoter in mouse brain and adrenals.
2011-08-01

CYP11A1 encodes the first enzyme of steroid biosynthesis, cytochrome P450scc. The expression of CYP11A1 in the nervous system allows neurosteroids to be synthesized de novo. In the classic steroidogenic tissues, adrenals and gonads, the key regulator controlling CYP11A1 expression is steroidogenic factor-1 (SF-1), ...

PubMed

49
Vascular Target for Detecting, Imaging and Treating Neoplasia or Neovasculature.
2005-01-01

Methods of delivering an agent in a tissue-specific manner, by targeting annexin A1, a derivative of annexin A1, or a binding partner of annexin A1, are described. The methods can be used for detecting, imaging and/or treating neoplasia, angiogenesis or ...

National Technical Information Service (NTIS)

50
Mutational analysis of a higher plant antenna protein provides identification of chromophores bound into multiple sites
1999-08-31

The chromophore-binding properties of the higher plant light-harvesting protein CP29 have been studied by using site-directed mutagenesis of pigment-binding residues. Overexpression of the apoproteins in bacteria was followed by reconstitution in vitro with purified pigments, thus obtaining a family of mutant CP29 proteins lacking ...

PubMed Central

51
Spring-loading the active site of cytochrome P450cam.
2010-12-24

A hydrogen bond network has been identified that adjusts protein-substrate contacts in cytochrome P450(cam) (CYP101A1). Replacing the native substrate camphor with adamantanone or norcamphor causes perturbations in NMR-detected NH correlations assigned to the network, which includes portions of a ? sheet and an adjacent helix that is remote from the active ...

PubMed

52
Designing of MIP based QCM sensor having thymine recognition sites based on biomimicking DNA approach.
2009-02-02

Quartz crystal microbalance (QCM) sensors coated with molecular imprinted polymers (MIP) have been developed for the determination of thymine. In this method, methacryloylamidoadenine (MA-Ade) have used as a new monomer and thymine template for inspiration of DNA nucleobases interaction. The thymine can be simultaneously hydrogen binding to MA-Ade and fit into the ...

PubMed

53
Actions of two GABA(A) receptor benzodiazepine-site ligands that are mediated via non-?2-dependent modulation.
2011-05-19

The potent sedative-hypnotic zolpidem and the convulsant methyl-6,7-dimethoxy-4-ethyl-?-carboline-3-carboxylate (DMCM) act primarily by binding to the benzodiazepine site of the main inhibitory neurotransmitter receptor, the pentameric ?-aminobutyric acid type A receptor (GABA(A)). This binding depends critically on the wild-type F77 ...

PubMed

54
Band 3 (AE1, SLC4A1)-mediated transport of stilbenedisulfonates. II: Evidence for transmembrane allosteric interactions between the "primary" stilbenedisulfonate binding site and the stilbenedisulfonate efflux site.
2006-09-25

Results from the first paper in this series indicated that the "primary" stilbenedisulfonate (PSD) site was not located on the DBDS (4, 4'-dibenzamido-2, 2'-stilbenedisulfonate) transport pathway into magnesium resealed ghosts (MRSG). Rather, transport correlated with DBDS binding to the "second" class of proton-activated binding ...

PubMed

55
Mechanism of superinduction of the CYP1A1 gene by 2,3,7,8-tetrachlorodibenzo-P-dioxin (TCDD) plus cycloheximide
1991-03-11

TCDD increases CYP1A1 transcription by activating the Ah receptor, which binds to a specific DNA recognition sequence within an enhancer upstream of the CYP1A1 gene. Cycloheximide produces an additional increase of transcription. Nuclear runoff analyses of mouse hepatoma cells stably transfected with plasmids containing ...

Energy Citations Database

56
Definition of a FoxA1 Cistrome that is Crucial for G1-S Phase Cell- Cycle Transit in Castration-Resistant Prostate Cancer.
2011-09-01

The enhancer pioneer transcription factor FoxA1 is a global mediator of steroid receptor (SR) action in hormone-dependent cancers. In castration-resistant prostate cancer (CRPC), FoxA1 acts as an androgen receptor co-factor to drive G2-M phase cell-cycle transit. Here we describe a mechanistically distinct ...

PubMed

57
Quaking Regulates Hnrnpa1 Expression through Its 3? UTR in Oligodendrocyte Precursor Cells
2011-01-06

In mice, Quaking (Qk) is required for myelin formation; in humans, it has been associated with psychiatric disease. QK regulates the stability, subcellular localization, and alternative splicing of several myelin-related transcripts, yet little is known about how QK governs these activities. Here, we show that QK enhances Hnrnpa1 mRNA stability by binding a conserved 3? UTR ...

PubMed Central

58
Mutagenesis of a potential immunoglobulin-binding protein-binding site enhances secretion of coagulation factor VIII.
1997-09-26

Coagulation factor VIII (FVIII) and factor V are homologous glycoproteins that have a domain structure of A1-A2-B-A3-C1-C2. FVIII is a heterodimer of the heavy chain (domains A1-A2-B) and the light chain (domains A3-C1-C2) in a metal ion-dependent association between the A1- and A3-domains. Previous studies identified a 110-amino acid region within the ...

PubMed

59
Molecular-level examination of Cu2+ binding structure for amyloid fibrils of 40-residue Alzheimer's ? by solid-state NMR spectroscopy.
2011-02-22

Cu(2+) binding to Alzheimer's ? (A?) peptides in amyloid fibrils has attracted broad attention, as it was shown that Cu ion concentration elevates in Alzheimer's senile plaque and such association of A? with Cu(2+) triggers the production of neurotoxic reactive oxygen species (ROS) such as H(2)O(2). However, detailed binding sites and ...

PubMed

60
Expression of enzymatically inactive wasp venom phospholipase A1 in Pichia pastoris.
2011-06-23

Wasp venom allergy is the most common insect venom allergy in Europe. It is manifested by large local reaction or anaphylactic shock occurring after a wasp sting. The allergy can be treated by specific immunotherapy with whole venom extracts. Wasp venom is difficult and costly to obtain and is a subject to composition variation, therefore it can be advantageous to substitute it with a cocktail of ...

PubMed

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61
Expression of Enzymatically Inactive Wasp Venom Phospholipase A1 in Pichia pastoris
2011-06-23

Wasp venom allergy is the most common insect venom allergy in Europe. It is manifested by large local reaction or anaphylactic shock occurring after a wasp sting. The allergy can be treated by specific immunotherapy with whole venom extracts. Wasp venom is difficult and costly to obtain and is a subject to composition variation, therefore it can be advantageous to substitute it with a cocktail of ...

PubMed Central

62
Purification and immobilization of recombinant variants of Brevundimonas diminuta glutaryl-7-aminocephalosporanic acid acylase expressed in Escherichia coli cells.
2007-09-19

Modified chitin-binding domain (ChBD) from Bacillus circulans chitinase A1 with W42F mutation in chitin-binding site was genetically fused to different positions within alpha-subunit of glutaryl-7-aminocephalosporanic acid acylase (GLA) gene. Hybrid proteins were efficiently expressed in E. ...

PubMed

63
Bovine SLC11A1: genomic sequence variation and functional analysis in cattle naturally resistant and susceptible to bovine brucellosis
2006-08-01

Previous analysis of the bovine SLC11A1 complementary DNA (cDNA) failed to identify any nucleotide variations other than a microsatellite length variation within the 3' untranslated region functionally associated with bovine brucellosis. In this study I set out to identify mutations in the genomic complement of the gene that may be associated with ...

E-print Network

64
The binding of lysophospholipids to rat liver fatty acid-binding protein and albumin.
1994-08-01

The binding of lysophospholipids to rat liver fatty acid-binding protein (FABP) and to BSA and human serum albumin was investigated by using competitive displacement fluorescence assays by monitoring the displacement of the fluorescent fatty acid probe 11-(dansylamino)undecanoic acid (DAUDA). In addition, direct binding assays using ...

PubMed Central

65
Engineering of binding affinity at metal ion binding sites for the stabilization of proteins: Subtilisin as a test case
1988-11-01

A weak Ca/sup 2 +/ binding site in the bacterial serine protease subtilisin BPN' was chosen as a model to explore the feasibility of stabilizing a protein by increasing the binding affinity at a metal ion binding site. The existence of this weak Ca/sup 2 +/ binding ...

Energy Citations Database

66
KTF-1, a transcriptional activator of Xenopus embryonic keratin expression.
1990-05-01

Nuclear extracts from embryos of Xenopus laevis were shown to contain a protein activity, KTF-1, which binds in vitro to the promoter of the embryonic, epidermis-specific keratin gene, XK81A1. Mobility shift assays, methylation interference and footprinting analysis were used to show that the KTF-1 binding ...

PubMed

67
Alpha-1 adrenoceptors in brown adipose tissue of lean and ob/ob mice
1986-03-01

Obese (ob/ob) mice have a low capacity to increase thyroxine 5'-deiodinase (T4 5'-D) in brown adipose tissue (BAT) when exposed to cold. This effect is mediated by alpha-1 (A-1) adrenoceptors. The authors objective was to find out whether BAT of the ob/ob mouse has normal A-1 receptors. Saturation ...

Energy Citations Database

68
eIF2? Phosphorylation Tips the Balance to Apoptosis during Osmotic Stress*
2010-05-28

Regulation of cell volume is of great importance because persistent swelling or shrinkage leads to cell death. Tissues experience hypertonicity in both physiological (kidney medullar cells) and pathological states (hypernatremia). Hypertonicity induces an adaptive gene expression program that leads to cell volume recovery or apoptosis under persistent stress. We show that the commitment to ...

PubMed Central

69
Plakophilin 1 stimulates translation by promoting eIF4A1 activity
2010-02-22

Plakophilins 1�3 (PKP1�3) are desmosomal proteins of the p120ctn family of armadillo-related proteins that are essential for organizing the desmosomal plaque. Recent findings identified PKPs in stress granules, suggesting an association with the translational machinery. However, a role of PKPs in controlling translation remained elusive so far. In this study, we show a ...

PubMed Central

70
Knock-In Mouse Lines Expressing either Mitochondrial or Microsomal CYP1A1: Differing Responses to Dietary Benzo[a]pyrene as Proof of Principle
2009-03-01

In the past, CYP1A1 protein was known to be located in the endoplasmic reticulum (ER; microsomes). More recently, CYP1A1 was shown also to be targeted to the inner mitochondrial membrane; mitochondrial import is dependent on NH2-terminal processing that exposes a cryptic targeting signal. ...

PubMed Central

71
Application of Homolgy Modeling to Generate CYP1A1 Mutants with Enhanced Activation of the Cancer Chemotherapeutic Prodrug Dacarbazine.
2011-08-01

The chemotherapeutic prodrug dacarbazine (DTIC) has limited efficacy in human malignancies and exhibits numerous adverse effects that arise from systemic exposure to the cytotoxic metabolite. DTIC is activated by CYP1A1 and CYP1A2 catalyzed N-demethylation. However, structural features of these enzymes that confer DTIC N-demethylation have not been characterized. A validated homology model of ...

PubMed

72
Correlation of in situ mechanosensitive responses of the Moraxella catarrhalis adhesin UspA1 with fibronectin and receptor CEACAM1 binding.
2011-08-29

Bacterial cell surfaces are commonly decorated with a layer formed from multiple copies of adhesin proteins whose binding interactions initiate colonization and infection processes. In this study, we investigate the physical deformability of the UspA1 adhesin protein from Moraxella catarrhalis, a causative agent of middle-ear infections in humans. ...

PubMed

73
Correlation of in situ mechanosensitive responses of the Moraxella catarrhalis adhesin UspA1 with fibronectin and receptor CEACAM1 binding
2011-09-13

Bacterial cell surfaces are commonly decorated with a layer formed from multiple copies of adhesin proteins whose binding interactions initiate colonization and infection processes. In this study, we investigate the physical deformability of the UspA1 adhesin protein from Moraxella catarrhalis, a causative agent of middle-ear infections in humans. ...

PubMed Central

74
Identification and properties of steroid-binding proteins in nesting Chelonia mydas plasma.
2006-07-14

We report for the first time the presence of a sex steroid-binding protein in the plasma of green sea turtles Chelonia mydas, which provides an insight into reproductive status. A high affinity, low capacity sex hormone steroid-binding protein was identified in nesting C. mydas and its thermal profile was established. In nesting C. mydas testosterone and ...

PubMed

75
Interaction sites of tropomyosin in muscle thin filament as identified by site-directed spin-labeling.
2011-05-18

To identify interaction sites we measured the rotational motion of a spin label covalently bound to the side chain of a cysteine genetically incorporated into rabbit skeletal muscle tropomyosin (Tm) at positions 13, 36, 146, 160, 174, 190, 209, 230, 271, and 279. Upon the addition of F-actin, the mobility of all the spin labels, especially at position 13, 271, or 279, of Tm ...

PubMed

76
The Japanese mutant A? (?E22-A?(1-39)) forms fibrils instantaneously, with low-thioflavin T fluorescence: seeding of wild-type A?(1-40) into atypical fibrils by ?E22-A?(1-39).
2011-02-24

The ?E693 (Japanese) mutation of the ?-amyloid precursor protein leads to production of ?E22-A? peptides such as ?E22-A?(1-39). Despite reports that these peptides do not form fibrils, here we show that, on the contrary, the peptide forms fibrils essentially instantaneously. The fibrils are typical amyloid fibrils in all respects except that they cause only low levels of thioflavin T (ThT) ...

PubMed

77
Prediction of the 3D structure of rat MrgA G protein-coupled receptor and identification of its binding site
2007-07-14

Mrg receptors are orphan G protein-coupled receptors (GPCRs) located mainly at the specific set of sensory neurons in the dorsal root ganglia, suggesting a role in nociception. We report here the 3-D structure of rat MrgA (rMrgA) receptor [obtained from homology modeling to the recently validated predicted structures of mouse MrgA1 and MrgC11] and the ...

PubMed Central

78
Characterization of natural organic matter from eight Norwegian surface waters: Proton and copper binding
1999-02-01

As a part of the International NOM-Typing Project, proton and copper binding studies were conducted on ultrafiltered and dialysed natural organic matter (NOM) samples from eight Norwegian Lakes. The NOM samples were similar with respect to proton and copper binding, although minor differences were observed among the samples of different origin. Slight ...

Energy Citations Database

79
Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family.
2001-09-24

Members of the heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, H, H', F, and 2H9, are involved in pre-mRNA processing. We analyzed the assembly of these proteins from splicing extracts onto four RNA regulatory elements as follows: a high affinity hnRNP A1-binding site (WA1), a sequence involved in ...

PubMed

80
Binding research on flavones as ligands of ?-amyloid aggregates by fluorescence and their 3D-QSAR, docking studies.
2010-10-23

The K(d)s (dissociation constants) of 21 flavone derivatives have been obtained by fluorescence in vitro when binding with A?(1-40) (?-amyloid(1-40)) aggregates protein. Extensive 3D-QSAR (quantitative structure-activity relationship) studies were performed on the fluorescent flavones, which are excellent ligands of A?(1-40) aggregates protein. Comparative molecular similarity ...

PubMed

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81
Characterization of annexin A1 glycan binding reveals binding to highly sulfated glycans with preference for highly sulfated heparan sulfate and heparin.
2011-03-03

Annexin A1 is a multifunctional, calcium-dependent phospholipid binding protein involved in a host of processes including inflammation, regulation of neuroendocrine signaling, apoptosis, and membrane trafficking. Binding of annexin A1 to glycans has been implicated in cell ...

PubMed

82
Reactivities of N-acetylgalactosamine-specific lectins with human IgA1 proteins.
2007-02-02

Lectins are proteins with specificity of binding to certain monosaccharides or oligosaccharides. They can detect abnormal glycosylation patterns on immunoglobulins in patients with various chronic inflammatory diseases, including rheumatoid arthritis and IgA nephropathy (IgAN). However, lectins exhibit binding heterogeneity, depending on their source and ...

PubMed

83
Reactivities of N-acetylgalactosamine-specific lectins with human IgA1 proteins
2007-02-02

Lectins are proteins with specificity of binding to certain monosaccharides or oligosaccharides. They can detect abnormal glycosylation patterns on immunoglobulins in patients with various chronic inflammatory diseases, including rheumatoid arthritis and IgA nephropathy (IgAN). However, lectins exhibit binding heterogeneity, depending on their source and ...

PubMed Central

84
Identification of the cephalosporin human serum albumin binding sites.
1993-12-01

We have demonstrated that the cephalosporins which possess heterozyclic pentagonal group substituents bind to the bilirubin binding site on albumin, while the cephalosporins which possess hexagonal hydrocarbon cycle substituents bind to the benzodizepine binding sites ...

PubMed

85
The polyprotein allergens of nematodes (NPAs) - Structure at last, but still mysterious.
2011-06-29

We are engaged in structural and functional studies of several types of lipid binding protein that are only found in nematodes. Amongst these are the nematode polyprotein allergens (NPAs) and we now report the solution structure of ABA-1A (As-NPA-A1), the most repeated unit within the NPA array of Ascaris suum, which is almost ...

PubMed

86
Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1.
2010-05-27

In Sphingomonas sp. A1, alginate is degraded by alginate lyases to its constituent monosaccharides, which are nonenzymatically converted to an alpha-keto acid, namely, 4-deoxy-l-erythro-5-hexoseulose uronic acid (DEH). The properties of the DEH-metabolizing enzyme and its gene in strain A1 were characterized. In ...

PubMed

87
The obligatory intestinal folate transporter PCFT (SLC46A1) is regulated by nuclear respiratory factor 1.
2010-08-19

Folates are essential vitamins that play a key role as one-carbon donors in a spectrum of biosynthetic pathways including RNA and DNA synthesis. The proton-coupled folate transporter (PCFT/SLC46A1) mediates obligatory intestinal folate absorption. Loss-of-function mutations in PCFT result in hereditary folate malabsorption, an autosomal recessive disorder ...

PubMed

88
PXR induces CYP27A1 and regulates cholesterol metabolism in the intestine.
2006-11-06

Mitochondrial sterol 27-hydroxylase (CYP27A1) catalyzes oxidative cleavage of the sterol side chain in the bile acid biosynthetic pathway in the liver and 27-hydroxylation of cholesterol in most tissues. Recent studies suggest that 27-hydroxycholesterol (27-HOC) activates liver orphan receptor alpha (LXRalpha) and induces the cholesterol efflux ...

PubMed

89
Emergence of a novel highly specific and catalytically efficient enzyme from a naturally promiscuous glutathione transferase.
2008-07-28

Redesign of glutathione transferases (GSTs) has led to enzymes with remarkably enhanced catalytic properties. Exchange of substrate-binding residues in GST A1-1 created a GST A4-4 mimic, called GIMFhelix, with >300-fold improved activity with nonenal and suppressed activity with other substrates. In the present investigation ...

PubMed

90
Increase in the Bmax of gamma-aminobutyric acid-A recognition sites in brain regions of mice receiving diazepam.
1984-04-01

gamma-Aminobutyric acid (GABA) receptors were characterized in vivo by studying ex vivo the binding of [3H]muscimol to cerebellum, cortex, hippocampus, and corpus striatum of mice receiving intravenous injections of tracer doses of high-specific-activity (approximately equal to 30 Ci/mmol) [3H]muscimol. This ligand binds with high affinity (apparent Kd, ...

PubMed Central

91
Egr-1 mediates transcriptional repression of COL2A1 promoter activity by interleukin-1beta.
2003-03-11

Following induction and activation of the early growth response (Egr)-1 transcription factor in human chondrocytes, interleukin-1beta (IL-1beta) suppresses the expression of the type II collagen gene (COL2A1), associated with induction of Egr-1 binding activity in nuclear extracts. The COL2A1 proximal promoter contains overlapping ...

PubMed

92
Structural rearrangement of SULT2A1: effects on dehydroepiandrosterone and raloxifene sulfation
2010-01-01

BackgroundHuman cytosoloic sulfotransferase (SULT) 2A1 is a major hepatic isoform and sulfates hydroxyl groups in structurally diverse sterols and xenobiotics. SULT2A1 crystal structures resolved in the presence and absence of 3?,5?-diphosphoadenosine (PAP) or dehydropeiandrosterone (DHEA) suggest a significant ...

PubMed Central

93
Chain length-dependent cooperativity in fatty acid binding and oxidation by cytochrome P450(BM3) (CYP102A1).
2011-09-09

Fatty acid binding and oxidation kinetics for wild type P450(BM3) (CYP102A1) from Bacillus megaterium have been found to display chain length-dependent homotropic behavior. Laurate and 13-methyl-myristate display Michaelis-Menten behavior while there are slight deviations with myristate at low ionic strengths. Palmitate shows ...

PubMed

94
The specificity of the human neutrophil IgA receptor (Fc alpha R) determined by measurement of chemiluminescence induced by serum or secretory IgA1 or IgA2.
1990-11-01

Heat or chemically aggregated IgA or IgG stimulated degranulation of neutrophils with comparable efficiency. The same aggregates induced a neutrophil respiratory burst which could be measured by lucigenin-enhanced chemiluminescence. Serum IgA1 or IgA2 coated onto microtitre plates were both capable of inducing a respiratory burst in neutrophils, as was ...

PubMed Central

95
Thioredoxin Binding Site of Phosphoribulokinase Overlaps the Catalytic Site.
1986-01-01

The ATP-regulatory binding site of phosphoribulokinase was studied using bromoacetylethanolamine phosphate (BrAcNHEtOP). BrAcNHEtOP binds to the active-regulatory binding site of the protein. Following trypsin degradation of the labeled protein, fragments...

National Technical Information Service (NTIS)

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