Sample records for aasa triin amos

  1. AASA's Leader Aims for Policy Influence

    ERIC Educational Resources Information Center

    Maxwell, Lesli A.

    2008-01-01

    In hiring Daniel A. Domenech, the directors of the American Association of School Administrators (AASA) were looking for an advocate who could position the group in the front row of education policy debates in Washington. Domenech, who began his job as the executive director of the AASA in July, has battle scars from years spent in the…

  2. AASA Survey: Impact of the Economic Downturn on School Jobs

    ERIC Educational Resources Information Center

    AASA, The School Superintendent's Association, 2009

    2009-01-01

    As part of an ongoing effort to gauge how school districts across the country are responding to the current economic downturn, the American Association of School Administrators (AASA) continues to assess various measures of economic impact. Earlier AASA surveys addressed trends in districts' initial responses to the downturn, districts'…

  3. AASA's Message Delivery Man Has Sent His Last

    ERIC Educational Resources Information Center

    Hunter, Bruce

    2012-01-01

    On Dec. 1, Nick Penning, a longtime fixture on the advocacy team at the American Association of School Administrators (AASA), retired as the association's senior legislative analyst. In his 26 years with the association, Penning played many roles relating to advocacy, but the one he relished the most was serving as the principal communicator with…

  4. 2016 AASA Superintendent Salary & Benefits Study: Non-Member Version

    ERIC Educational Resources Information Center

    Finnan, Leslie A.; McCord, Robert S.

    2017-01-01

    The 2016 AASA Superintendent Salary & Benefits Study marks the fifth edition of this study. This survey tracks the demographics, salary, benefits, and other elements of the employment contracts of school superintendents throughout the country. This year's study is based on 1,392 responses (15 percent response rate). The survey was distributed…

  5. Heat capacities and thermal conductivities of AmO 2 and AmO 1.5

    NASA Astrophysics Data System (ADS)

    Nishi, Tsuyoshi; Itoh, Akinori; Ichise, Kenichi; Arai, Yasuo

    2011-07-01

    The thermal diffusivity of AmO 2 was measured from 473 to 773 K and that of AmO 1.5 between 473 and 1373 K using a laser flash method. The enthalpy increment of AmO 2 was measured from 335 to 1081 K and that of AmO 1.5 between 335 and 1086 K using drop calorimetry. The heat capacities of AmO 2 and AmO 1.5 were derived from the enthalpy increment measurements. The thermal conductivity was determined from the measured thermal diffusivity, heat capacity and bulk density. The heat capacities of AmO 2 was found larger than that of AmO 1.5. The thermal conductivities of AmO 2 and AmO 1.5 were found to decrease with increasing temperature in the investigated temperature range. The thermal conductivity of AmO 1.5 with A -type hexagonal structure was smaller than that of AmO 2 with C-type fluorite structure but larger than that of sub-stoichiometric AmO 1.73.

  6. Biology-inspired AMO physics

    NASA Astrophysics Data System (ADS)

    Mathur, Deepak

    2015-01-01

    This Topical Review presents an overview of increasingly robust interconnects that are being established between atomic, molecular and optical (AMO) physics and the life sciences. AMO physics, outgrowing its historical role as a facilitator—a provider of optical methodologies, for instance—now seeks to partner biology in its quest to link systems-level descriptions of biological entities to insights based on molecular processes. Of course, perspectives differ when AMO physicists and biologists consider various processes. For instance, while AMO physicists link molecular properties and dynamics to potential energy surfaces, these have to give way to energy landscapes in considerations of protein dynamics. But there are similarities also: tunnelling and non-adiabatic transitions occur both in protein dynamics and in molecular dynamics. We bring to the fore some such differences and similarities; we consider imaging techniques based on AMO concepts, like 4D fluorescence microscopy which allows access to the dynamics of cellular processes, multiphoton microscopy which offers a built-in confocality, and microscopy with femtosecond laser beams to saturate the suppression of fluorescence in spatially controlled fashion so as to circumvent the diffraction limit. Beyond imaging, AMO physics contributes with optical traps that probe the mechanical and dynamical properties of single ‘live’ cells, highlighting differences between healthy and diseased cells. Trap methodologies have also begun to probe the dynamics governing of neural stem cells adhering to each other to form neurospheres and, with squeezed light to probe sub-diffusive motion of yeast cells. Strong field science contributes not only by providing a source of energetic electrons and γ-rays via laser-plasma accelerations schemes, but also via filamentation and supercontinuum generation, enabling mainstream collision physics into play in diverse processes like DNA damage induced by low-energy collisions to

  7. Next Generation Sequence Assembly with AMOS

    PubMed Central

    Treangen, Todd J; Sommer, Dan D; Angly, Florent E; Koren, Sergey; Pop, Mihai

    2011-01-01

    A Modular Open-Source Assembler (AMOS) was designed to offer a modular approach to genome assembly. AMOS includes a wide range of tools for assembly, including lightweight de novo assemblers Minimus and Minimo, and Bambus 2, a robust scaffolder able to handle metagenomic and polymorphic data. This protocol describes how to configure and use AMOS for the assembly of Next Generation sequence data. Additionally, we provide three tutorial examples that include bacterial, viral, and metagenomic datasets with specific tips for improving assembly quality. PMID:21400694

  8. Next generation sequence assembly with AMOS.

    PubMed

    Treangen, Todd J; Sommer, Dan D; Angly, Florent E; Koren, Sergey; Pop, Mihai

    2011-03-01

    A Modular Open-Source Assembler (AMOS) was designed to offer a modular approach to genome assembly. AMOS includes a wide range of tools for assembly, including the lightweight de novo assemblers Minimus and Minimo, and Bambus 2, a robust scaffolder able to handle metagenomic and polymorphic data. This protocol describes how to configure and use AMOS for the assembly of Next Generation sequence data. Additionally, we provide three tutorial examples that include bacterial, viral, and metagenomic datasets with specific tips for improving assembly quality. © 2011 by John Wiley & Sons, Inc.

  9. The Further Development of the Conceptual Model and Operational Dimensions of the AASA National Academy for School Executives. Final Report.

    ERIC Educational Resources Information Center

    Curtis, William H.; And Others

    The main purpose of this project was to develop a blueprint for the future growth of the AASA-National Academy for School Executives. The resulting comprehensive model is displayed in outline form through the use of a conceptual framework that includes three major processes -- program planning and development, implementation, and evaluation. Each…

  10. AmO 2 Analysis for Analytical Method Testing and Assessment: Analysis Support for AmO 2 Production

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kuhn, Kevin John; Bland, Galey Jean; Fulwyler, James Brent

    Americium oxide samples will be measured for various analytes to support AmO 2 production. The key analytes that are currently requested by the Am production customer at LANL include total Am content, Am isotopics, Pu assay, Pu isotopics, and trace element content including 237Np content. Multiple analytical methods will be utilized depending on the sensitivity, accuracy and precision needs of the Am matrix. Traceability to the National Institute of Standards and Technology (NIST) will be achieved, where applicable, by running NIST traceable quality control materials. This given that there are no suitable AmO 2 reference materials currently available for requestedmore » analytes. The primary objective is to demonstrate the suitability of actinide analytical chemistry methods to support AmO 2 production operations.« less

  11. amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

    PubMed Central

    Pester, Michael; Rattei, Thomas; Flechl, Stefan; Gröngröft, Alexander; Richter, Andreas; Overmann, Jörg; Reinhold-Hurek, Barbara; Loy, Alexander; Wagner, Michael

    2012-01-01

    Ammonia-oxidizing archaea (AOA) play an important role in nitrification and many studies exploit their amoA genes as marker for their diversity and abundance. We present an archaeal amoA consensus phylogeny based on all publicly available sequences (status June 2010) and provide evidence for the diversification of AOA into four previously recognized clusters and one newly identified major cluster. These clusters, for which we suggest a new nomenclature, harboured 83 AOA species-level OTU (using an inferred species threshold of 85% amoA identity). 454 pyrosequencing of amoA amplicons from 16 soils sampled in Austria, Costa Rica, Greenland and Namibia revealed that only 2% of retrieved sequences had no database representative on the species-level and represented 30–37 additional species-level OTUs. With the exception of an acidic soil from which mostly amoA amplicons of the Nitrosotalea cluster were retrieved, all soils were dominated by amoA amplicons from the Nitrososphaera cluster (also called group I.1b), indicating that the previously reported AOA from the Nitrosopumilus cluster (also called group I.1a) are absent or represent minor populations in soils. AOA richness estimates on the species level ranged from 8–83 co-existing AOAs per soil. Presence/absence of amoA OTUs (97% identity level) correlated with geographic location, indicating that besides contemporary environmental conditions also dispersal limitation across different continents and/or historical environmental conditions might influence AOA biogeography in soils. PMID:22141924

  12. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

    PubMed Central

    2013-01-01

    We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS. PMID:23320958

  13. Global Occurrence of Archaeal amoA Genes in Terrestrial Hot Springs▿

    PubMed Central

    Zhang, Chuanlun L.; Ye, Qi; Huang, Zhiyong; Li, WenJun; Chen, Jinquan; Song, Zhaoqi; Zhao, Weidong; Bagwell, Christopher; Inskeep, William P.; Ross, Christian; Gao, Lei; Wiegel, Juergen; Romanek, Christopher S.; Shock, Everett L.; Hedlund, Brian P.

    2008-01-01

    Despite the ubiquity of ammonium in geothermal environments and the thermodynamic favorability of aerobic ammonia oxidation, thermophilic ammonia-oxidizing microorganisms belonging to the crenarchaeota kingdom have only recently been described. In this study, we analyzed microbial mats and surface sediments from 21 hot spring samples (pH 3.4 to 9.0; temperature, 41 to 86°C) from the United States, China, and Russia and obtained 846 putative archaeal ammonia monooxygenase large-subunit (amoA) gene and transcript sequences, representing a total of 41 amoA operational taxonomic units (OTUs) at 2% identity. The amoA gene sequences were highly diverse, yet they clustered within two major clades of archaeal amoA sequences known from water columns, sediments, and soils: clusters A and B. Eighty-four percent (711/846) of the sequences belonged to cluster A, which is typically found in water columns and sediments, whereas 16% (135/846) belonged to cluster B, which is typically found in soils and sediments. Although a few amoA OTUs were present in several geothermal regions, most were specific to a single region. In addition, cluster A amoA genes formed geographic groups, while cluster B sequences did not group geographically. With the exception of only one hot spring, principal-component analysis and UPGMA (unweighted-pair group method using average linkages) based on the UniFrac metric derived from cluster A grouped the springs by location, regardless of temperature or bulk water pH, suggesting that geography may play a role in structuring communities of putative ammonia-oxidizing archaea (AOA). The amoA genes were distinct from those of low-temperature environments; in particular, pair-wise comparisons between hot spring amoA genes and those from sympatric soils showed less than 85% sequence identity, underscoring the distinctness of hot spring archaeal communities from those of the surrounding soil system. Reverse transcription-PCR showed that amoA genes were

  14. Global occurrence of archaeal amoA genes in terrestrial hot springs.

    PubMed

    Zhang, Chuanlun L; Ye, Qi; Huang, Zhiyong; Li, Wenjun; Chen, Jinquan; Song, Zhaoqi; Zhao, Weidong; Bagwell, Christopher; Inskeep, William P; Ross, Christian; Gao, Lei; Wiegel, Juergen; Romanek, Christopher S; Shock, Everett L; Hedlund, Brian P

    2008-10-01

    Despite the ubiquity of ammonium in geothermal environments and the thermodynamic favorability of aerobic ammonia oxidation, thermophilic ammonia-oxidizing microorganisms belonging to the crenarchaeota kingdom have only recently been described. In this study, we analyzed microbial mats and surface sediments from 21 hot spring samples (pH 3.4 to 9.0; temperature, 41 to 86 degrees C) from the United States, China, and Russia and obtained 846 putative archaeal ammonia monooxygenase large-subunit (amoA) gene and transcript sequences, representing a total of 41 amoA operational taxonomic units (OTUs) at 2% identity. The amoA gene sequences were highly diverse, yet they clustered within two major clades of archaeal amoA sequences known from water columns, sediments, and soils: clusters A and B. Eighty-four percent (711/846) of the sequences belonged to cluster A, which is typically found in water columns and sediments, whereas 16% (135/846) belonged to cluster B, which is typically found in soils and sediments. Although a few amoA OTUs were present in several geothermal regions, most were specific to a single region. In addition, cluster A amoA genes formed geographic groups, while cluster B sequences did not group geographically. With the exception of only one hot spring, principal-component analysis and UPGMA (unweighted-pair group method using average linkages) based on the UniFrac metric derived from cluster A grouped the springs by location, regardless of temperature or bulk water pH, suggesting that geography may play a role in structuring communities of putative ammonia-oxidizing archaea (AOA). The amoA genes were distinct from those of low-temperature environments; in particular, pair-wise comparisons between hot spring amoA genes and those from sympatric soils showed less than 85% sequence identity, underscoring the distinctness of hot spring archaeal communities from those of the surrounding soil system. Reverse transcription-PCR showed that amoA genes were

  15. Case Study: del Amo Bioventing

    EPA Science Inventory

    The attached presentation discusses the fundamentals of bioventing in the vadose zone. The basics of bioventing are presented. The experience to date with the del Amo Superfund Site is presented as a case study.

  16. Archaeal amoA and ureC genes and their transcriptional activity in the Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Pedneault, Estelle; Galand, Pierre E.; Potvin, Marianne; Tremblay, Jean-Éric; Lovejoy, Connie

    2014-04-01

    Thaumarchaeota and the gene encoding for a subunit of ammonia monooxygenase (amoA) are ubiquitous in Polar Seas, and some Thaumarchaeota also have a gene coding for ureC, diagnostic for urease. Using quantitative PCR we investigated the occurrence of genes and transcripts of ureC and amoA in Arctic samples from winter, spring and summer. AmoA genes, ureC genes and amoA transcripts were always present, but ureC transcripts were rarely detected. Over a 48 h light manipulation experiment amoA transcripts persisted under light and dark conditions, but not ureC transcripts. In addition, maxima for amoA transcript were nearer the surface compared to amoA genes. Clone libraries using DNA template recovered shallow and deep amoA clades but only the shallow clade was recovered from cDNA (from RNA). These results imply environmental control of amoA expression with direct or indirect light effects, and rare ureC expression despite its widespread occurrence in the Arctic Ocean.

  17. Expedition Atacama - project AMOS in Chile

    NASA Astrophysics Data System (ADS)

    Tóth, J.; Kaniansky, S.

    2016-01-01

    The Slovak Video Meteor Network operates since 2009 (Tóth et al., 2011). It currently consists of four semi-automated all-sky video cameras, developed at the Astronomical Observatory in Modra, Comenius University in Bratislava, Slovakia. Two new generations of AMOS (All-sky Meteor Orbit System) cameras operate fully automatically at the Canary Islands, Tenerife and La Palma, since March 2015 (Tóth et al., 2015). As a logical step, we plan to cover the southern hemisphere from Chile. We present observational experiences in meteor astronomy from the Atacama Desert and other astronomical sites in Chile. This summary of the observations lists meteor spectra records (26) between Nov.5-13, 2015 mostly Taurid meteors, single and double station meteors as well as the first light from the permanent AMOS stations in Chile.

  18. Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies

    PubMed Central

    Schatz, Michael C.; Phillippy, Adam M.; Sommer, Daniel D.; Delcher, Arthur L.; Puiu, Daniela; Narzisi, Giuseppe; Salzberg, Steven L.; Pop, Mihai

    2013-01-01

    Since its launch in 2004, the open-source AMOS project has released several innovative DNA sequence analysis applications including: Hawkeye, a visual analytics tool for inspecting the structure of genome assemblies; the Assembly Forensics and FRCurve pipelines for systematically evaluating the quality of a genome assembly; and AMOScmp, the first comparative genome assembler. These applications have been used to assemble and analyze dozens of genomes ranging in complexity from simple microbial species through mammalian genomes. Recent efforts have been focused on enhancing support for new data characteristics brought on by second- and now third-generation sequencing. This review describes the major components of AMOS in light of these challenges, with an emphasis on methods for assessing assembly quality and the visual analytics capabilities of Hawkeye. These interactive graphical aspects are essential for navigating and understanding the complexities of a genome assembly, from the overall genome structure down to individual bases. Hawkeye and AMOS are available open source at http://amos.sourceforge.net. PMID:22199379

  19. Comparison among amoA Primers Suited for Quantification and Diversity Analyses of Ammonia-Oxidizing Bacteria in Soil

    PubMed Central

    Shimomura, Yumi; Morimoto, Sho; Hoshino, Yuko Takada; Uchida, Yoshitaka; Akiyama, Hiroko; Hayatsu, Masahito

    2012-01-01

    Ammonia monooxygenase subunit A gene (amoA) is frequently used as a functional gene marker for diversity analysis of ammonia-oxidizing bacteria (AOB). To select a suitable amoA primer for real-time PCR and PCR-denaturing gradient gel electrophoresis (DGGE), three reverse primers (degenerate primer amoA-2R; non-degenerate primers amoA-2R-GG and amoA-2IR) were examined. No significant differences were observed among the three primers in terms of quantitative values of amoA from environmental samples using real-time PCR. We found that PCR-DGGE analysis with the amoA-2IR primer gave the best results in this studied soil. These results indicate that amoA-2IR is a suitable primer for community analysis of AOB in the environment. PMID:22075625

  20. Transcription of All amoC Copies Is Associated with Recovery ofNitrosomonas europaea from Ammonia Starvation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Berube, Paul M.; Samudrala, Ram; Stahl, David A.

    2007-09-21

    The chemolithotrophic ammonia-oxidizing bacteriumNitrosomonas europaea is known to be highly resistant to starvationconditions. The transcriptional response of N. europaea to ammoniaaddition following short- and long-term starvation was examined by primerextension and S1 nuclease protection analyses of genes encoding enzymesfor ammonia oxidation (amoCAB operons) and CO2 fixation (cbbLS), a third,lone copy of amoC (amoC3), and two representative housekeeping genes(glyA and rpsJ). Primer extension analysis of RNA isolated from growing,starved, and recovering cells revealed two differentially regulatedpromoters upstream of the two amoCAB operons. The distal sigma 70 typeamoCAB promoter was constitutively active in the presence of ammonia, butthe proximal promoter was onlymore » active when cells were recovering fromammonia starvation. The lone, divergent copy of amoC (amoC3) wasexpressed only during recovery. Both the proximal amoC1,2 promoter andthe amoC3 promoter are similar to gram-negative sigma E promoters, thusimplicating sigma E in the regulation of the recovery response. Althoughmodeling of subunit interactions suggested that a nonconservative prolinesubstitution in AmoC3 may modify the activity of the holoenzyme,characterization of a Delta amoC3 strain showed no significant differencein starvation recovery under conditions evaluated. In contrast to the amotranscripts, a delayed appearance of transcripts for a gene required forCO2 fixation (cbbL) suggested that its transcription is retarded untilsufficient energy is available. Overall, these data revealed a programmedexit from starvation likely involving regulation by sigma E and thecoordinated regulation of catabolic and anabolic genes.« less

  1. Chemical thermodynamic representation of (U, Pu, Am)O 2- x

    NASA Astrophysics Data System (ADS)

    Osaka, Masahiko; Namekawa, Takashi; Kurosaki, Ken; Yamanaka, Shinsuke

    2005-09-01

    The oxygen potential isotherms of (U, Pu, Am)O 2- x were represented by a chemical thermodynamic model proposed by Lindemer et al. It was assumed in the present model that (U, Pu, Am)O 2- x consisted of the chemical species [UO 2], [PuO 2], [Pu 4/3O 2], [AmO 2] and [Am 5/4O 2] in a pseudo-quaternary system by treating the reduction rates of Pu and Am as identical; furthermore an interaction between [Am 5/4O 2] and [UO 2] was introduced. The agreement between analytical and experimental isotherms was good, but the analytical values slightly overestimated the experimental values especially in the case of lower Am content. Adding an interaction between [Am 5/4O 2] and [PuO 2] to the model resulted in a better representation.

  2. Insight into the Am-O Phase Equilibria: A Thermodynamic Study Coupling High-Temperature XRD and CALPHAD Modeling.

    PubMed

    Epifano, Enrica; Guéneau, Christine; Belin, Renaud C; Vauchy, Romain; Lebreton, Florent; Richaud, Jean-Christophe; Joly, Alexis; Valot, Christophe; Martin, Philippe M

    2017-07-03

    In the frame of minor actinide transmutation, americium can be diluted in UO 2 and (U, Pu)O 2 fuels burned in fast neutron reactors. The first mandatory step to foresee the influence of Am on the in-reactor behavior of transmutation targets or fuel is to have fundamental knowledge of the Am-O binary system and, in particular, of the AmO 2-x phase. In this study, we coupled HT-XRD (high-temperature X-ray diffraction) experiments with CALPHAD thermodynamic modeling to provide new insights into the structural properties and phase equilibria in the AmO 2-x -AmO 1.61+x -Am 2 O 3 domain. Because of this approach, we were able for the first time to assess the relationships between temperature, lattice parameter, and hypostoichiometry for fcc AmO 2-x . We showed the presence of a hyperstoichiometric existence domain for the bcc AmO 1.61+x phase and the absence of a miscibility gap in the fcc AmO 2-x phase, contrary to previous representations of the phase diagram. Finally, with the new experimental data, a new CALPHAD thermodynamic model of the Am-O system was developed, and an improved version of the phase diagram is presented.

  3. Euclid mirrors and test collimator: AMOS developments

    NASA Astrophysics Data System (ADS)

    Gloesener, Pierre; Wolfs, Fabrice; Cola, Marcel; Pirnay, Olivier; Flebus, Carlo

    2016-07-01

    EUCLID is an optical/near-infrared survey mission to be launched in 2020 towards the L2 Lagrange point. It will aim at studying the dark universe and providing a better understanding of the origin of the accelerating expansion of the universe. Through the use of cosmological sounding, it will investigate the nature of dark energy, dark matter and gravity by tracking their observational signatures on the geometry of the universe and on the cosmic history of large structures formation. The EUCLID payload module (PLM) consists of a 1.2 m-class telescope and will accommodate two instruments. As a subcontractor of AIRBUS Defence and Space, AMOS is responsible for the manufacturing of the secondary and the third mirrors of the telescope as well as for the flat folding mirror set within the focal plane arrangement of EUCLID telescope, which incorporates dedicated filtering functions. AMOS produces in addition the 1.3 m-class test collimator for the on-ground validation of the EUCLID instrument.

  4. The Chloroplast Protease AMOS1/EGY1 Affects Phosphate Homeostasis under Phosphate Stress1

    PubMed Central

    Yu, Fang Wei; Zhu, Xiao Fang; Li, Guang Jie; Kronzucker, Herbert J.; Shi, Wei Ming

    2016-01-01

    Plastid intramembrane proteases in Arabidopsis (Arabidopsis thaliana) are involved in jasmonic acid biosynthesis, chloroplast development, and flower morphology. Here, we show that Ammonium-Overly-Sensitive1 (AMOS1), a member of the family of plastid intramembrane proteases, plays an important role in the maintenance of phosphate (P) homeostasis under P stress. Loss of function of AMOS1 revealed a striking resistance to P starvation. amos1 plants displayed retarded root growth and reduced P accumulation in the root compared to wild type (Col-0) under P-replete control conditions, but remained largely unaffected by P starvation, displaying comparable P accumulation and root and shoot growth under P-deficient conditions. Further analysis revealed that, under P-deficient conditions, the cell wall, especially the pectin fraction of amos1, released more P than that of wild type, accompanied by a reduction of the abscisic acid (ABA) level and an increase in ethylene production. By using an ABA-insensitive mutant, abi4, and applying ABA and ACC exogenously, we found that ABA inhibits cell wall P remobilization while ethylene facilitates P remobilization from the cell wall by increasing the pectin concentration, suggesting ABA can counteract the effect of ethylene. Furthermore, the elevated ABA level and the lower ethylene production also correlated well with the mimicked P deficiency in amos1. Thus, our study uncovers the role of AMOS1 in the maintenance of P homeostasis through ABA-antagonized ethylene signaling. PMID:27516532

  5. Improved synthesis and biological evaluation of Tc-99m radiolabeled AMO for miRNA imaging in tumor xenografts.

    PubMed

    Kang, Lei; Fan, Zhongyi; Sun, Hongwei; Feng, Yingying; Ma, Chao; Yan, Ping; Zhang, Chunli; Ma, Huan; Hao, Pan; Chen, Xueqi; Zheng, Zhibing; Xu, Xiaojie; Wang, Rongfu

    2015-01-01

    MicroRNAs (miRNAs) have been considered as important biomarkers for malignant tumors. In this study, we introduced an improved (99m)Tc labeling method for noninvasive visualization of overexpressed miRNAs in tumor-bearing mice. Anti-miRNA-21 oligonucleotide (AMO) with partial 2'-O-methyl and phosphorothioate modification was designed and chemically synthesized. After conjugated with NHS-MAG3, AMO was labeled with (99m)Tc. Optimization was made to shorten reaction time and to improve labeling efficiency. Labeling efficiency was 97%, and specific activity was 2.78 MBq/ng. During 12 h, (99m)Tc-AMO showed no significant degradation by gel electrophoresis. Its radiochemical purity was stable, between 95.8% and 99.1%. Further, (99m)Tc-AMO decreased the level of miR-21 and increased the expression of PTEN protein at cellular level, shown by qRT-PCR and Western blot. Fluorescent protein labeled AMO displayed specific distribution and good stability in tumor cells. After the administration in tumor-bearing mice, (99m)Tc-AMO showed more radioactive uptake in the miR-21 over-expressed tumors than scramble control. Biodistribution results further proved the significant difference of tumor uptake between (99m)Tc-AMO and (99m)Tc-control. Therefore, this study presents an improved method with shorten time to prepare a (99m)Tc radiolabeled AMO. In addition, it supports the role of (99m)Tc-AMO for noninvasive visualization of miR-21 in malignant tumors. Copyright © 2015 John Wiley & Sons, Ltd.

  6. amoA-encoding archaea and thaumarchaeol in the lakes on the northeastern Qinghai-Tibetan Plateau, China

    PubMed Central

    Yang, Jian; Jiang, Hongchen; Dong, Hailiang; Wang, Huanye; Wu, Geng; Hou, Weiguo; Liu, Weiguo; Zhang, Chuanlun; Sun, Yongjuan; Lai, Zhongping

    2013-01-01

    All known ammonia-oxidizing archaea (AOA) belong to the phylum Thaumarchaeota within the domain Archaea. AOA possess the diagnostic amoA gene (encoding the alpha subunit of ammonia monooxygenase) and produce lipid biomarker thaumarchaeol. Although the abundance and diversity of amoA gene-encoding archaea (AEA) in freshwater lakes have been well-studied, little is known about AEA ecology in saline/hypersaline lakes. In this study, the distribution of the archaeal amoA gene and thaumarchaeol were investigated in nine Qinghai–Tibetan lakes with a salinity range from freshwater to salt-saturation (salinity: 325 g L-1). The results showed that the archaeal amoA gene was present in hypersaline lakes with salinity up to 160 g L-1. The archaeal amoA gene diversity in Tibetan lakes was different from those in other lakes worldwide, suggesting Tibetan lakes (high elevation, strong ultraviolet, and dry climate) may host a unique AEA population of different evolutionary origin from those in other lakes. Thaumarchaeol was present in all of the studied hypersaline lakes, even in those where no AEA amoA gene was observed. Future research is needed to determine the ecological function of AEA and possible sources of thaumarchaeol in the Qinghai–Tibetan hypersaline lakes. PMID:24273535

  7. The barley amo1 locus is tightly linked to the starch synthase IIIa gene and negatively regulates expression of granule-bound starch synthetic genes

    PubMed Central

    Li, Zhongyi; Li, Dehong; Du, Xihua; Wang, Hong; Larroque, Oscar; Jenkins, Colin L. D.; Jobling, Stephen A.; Morell, Matthew K.

    2011-01-01

    In this study of barley starch synthesis, the interaction between mutations at the sex6 locus and the amo1 locus has been characterized. Four barley genotypes, the wild type, sex6, amo1, and the amo1sex6 double mutant, were generated by backcrossing the sex6 mutation present in Himalaya292 into the amo1 ‘high amylose Glacier’. The wild type, amo1, and sex6 genotypes gave starch phenotypes consistent with previous studies. However, the amo1sex6 double mutant yielded an unexpected phenotype, a significant increase in starch content relative to the sex6 phenotype. Amylose content (as a percentage of starch) was not increased above the level observed for the sex6 mutation alone; however, on a per seed basis, grain from lines containing the amo1 mutation (amo1 mutants and amo1sex6 double mutants) synthesize significantly more amylose than the wild-type lines and sex6 mutants. The level of granule-bound starch synthase I (GBSSI) protein in starch granules is increased in lines containing the amo1 mutation (amo1 and amo1sex6). In the amo1 genotype, starch synthase I (SSI), SSIIa, starch branching enzyme IIa (SBEIIa), and SBEIIb also markedly increased in the starch granules. Genetic mapping studies indicate that the ssIIIa gene is tightly linked to the amo1 locus, and the SSIIIa protein from the amo1 mutant has a leucine to arginine residue substitution in a conserved domain. Zymogram analysis indicates that the amo1 phenotype is not a consequence of total loss of enzymatic activity although it remains possible that the amo1 phenotype is underpinned by a more subtle change. It is therefore proposed that amo1 may be a negative regulator of other genes of starch synthesis. PMID:21813797

  8. AmosWEB ... Economics with a Touch of Whimsy!

    ERIC Educational Resources Information Center

    Avalos, Antonio; Amos, Orley M. Jr.

    2002-01-01

    Describes AmosWEB.com as a collection of unique resources for students and instructors devoted to uncovering the most effective means of using technology to teach economics. States that most of the resources are designed for college level introductory courses but can be used with high school students and graduate business and engineering students.…

  9. Status of the AMoRE Experiment Searching for Neutrinoless Double Beta Decay Using Low-Temperature Detectors

    NASA Astrophysics Data System (ADS)

    Jo, H. S.; Choi, S.; Danevich, F. A.; Fleischmann, A.; Jeon, J. A.; Kang, C. S.; Kang, W. G.; Kim, G. B.; Kim, H. J.; Kim, H. L.; Kim, I.; Kim, S. K.; Kim, S. R.; Kim, Y. H.; Kim, Y. D.; Kornoukhov, V.; Kwon, D. H.; Lee, C.; Lee, H. J.; Lee, M. K.; Lee, S. H.; Oh, S. Y.; So, J. H.; Yoon, Y. S.

    2018-05-01

    The goal of the Advanced Mo-based Rare process Experiment (AMoRE) is to search for the neutrinoless double beta decay of ^{100} Mo using low-temperature detectors consisting of Mo-based scintillating crystals read out via metallic magnetic calorimeters. Heat and light signals are measured simultaneously at millikelvin temperatures, which are reached using a cryogen-free dilution refrigerator. The AMoRE-Pilot experiment, using six ^{100} Mo-enriched, ^{48} Ca-depleted calcium molybdate crystals with a total mass of about 1.9 kg, has been running in the 700-m-deep Yangyang underground laboratory as the pilot phase of the AMoRE project. Several setup improvements through different runs allowed us to achieve a high energy resolution and an efficient particle discrimination. This article briefly presents the status of the AMoRE-Pilot experiment, as well as the plans for the next, larger-scale, experimental stages.

  10. High temperature heat capacity of (U, Am)O2±x

    NASA Astrophysics Data System (ADS)

    Epifano, E.; Beneš, O.; Vălu, O. S.; Zappey, J.; Lebreton, F.; Martin, P. M.; Guéneau, C.; Konings, R. J. M.

    2017-10-01

    Mixed uranium and americium dioxides (U, Am)O2±x are candidates as possible transmutation targets for generation IV reactors. In this work, the enthalpy increments of this solid solution were measured in the 470-1750 K temperature range by drop calorimetry for Am/(Am + U) ratios equal to 0.32, 0.39, 0.49, 0.58 and 0.68. Then, the heat capacity functions were obtained by derivation of the enthalpy data. The results of this work were compared to the heat capacity and enthalpy functions reported in the literature for the UO2 [1] and AmO2 [2] binary oxides and for the U0.9Am0.1O2±x, U0.8Am0.2O2±x mixed oxides [3]. From the obtained trend, it was found out that an excess contribution to the enthalpy increment appears for T > 1100 K in the compositions with Am/(Am + U)≥0.4 and a possible explanation attributing this effect to oxygen hypostoichiometry is provided. Finally, to verify the hypothesis, thermodynamic computations based on the CALPHAD method were performed for AmO2-x under air and the results confirmed that the source of the excess contribution is the formation of oxygen vacancies.

  11. The Divergent AmoC3 Subunit of Ammonia Monooxygenase Functions as Part of a Stress Response System in Nitrosomonas europaea

    PubMed Central

    Berube, Paul M.

    2012-01-01

    The ammonia monooxygenase of chemolithotrophic ammonia-oxidizing bacteria (AOB) catalyzes the first step in ammonia oxidation by converting ammonia to hydroxylamine. The monooxygenase of Nitrosomonas europaea is encoded by two nearly identical operon copies (amoCAB1,2). Several AOB, including N. europaea, also possess a divergent monocistronic copy of amoC (amoC3) of unknown function. Previous work suggested a possible functional role for amoC3 as part of the σE stress response regulon during the recovery of N. europaea from extended ammonia starvation, thus indicating its importance during the exit of cells from starvation. We here used global transcription analysis to show that expression of amoC3 is part of a general poststarvation cellular response system in N. europaea. We also found that amoC3 is required for an efficient response to some stress conditions, as deleting this gene impaired growth at elevated temperatures and recovery following starvation under high oxygen tensions. Deletion of the σ32 global stress response regulator demonstrated that the heat shock regulon plays a significant role in mediating the recovery of N. europaea from starvation. These findings provide the first described phenotype associated with the divergent AmoC3 subunit which appears to function as a stress-responsive subunit capable of maintaining ammonia oxidation activity under stress conditions. While this study was limited to starvation and heat shock, it is possible that the AmoC3 subunit may be responsive to other membrane stressors (e.g., solvent or osmotic shocks) that are prevalent in the environments of AOB. PMID:22544266

  12. Toward a Contextual Theological Reading of John Amos Comenius

    ERIC Educational Resources Information Center

    Glenn, Justin

    2016-01-01

    John Amos Comenius developed a revolutionary philosophy of education in seventeenth-century Europe. He argued for ideas such as universal education, which was virtually unheard of in his time but has become standard in modern western society. In the middle of the twentieth century, Comenius's ideas were heralded in the secular educational…

  13. The AMoRE: Search for Neutrinoless Double Beta Decay in 100Mo

    NASA Astrophysics Data System (ADS)

    Park, HyangKyu; AMoRE Collaboration

    2016-04-01

    The AMoRE (Advanced Mo-based Rare process Experiment) collaboration is going to use calcium molybdate, 40Ca100MoO4 (CMO), crystal scintillators enriched in 100Mo and depleted in 48Ca to search for neutrinoless double-beta (0 νββ) decay of 100Mo using a technique of cryogenic scintillating bolometers at the underground laboratory in Korea. The collaboration is going to utilize metallic magnetic calorimeters (MMC) as temperature sensors both in heat and light channels of CMO detectors operated at milli-Kelvin temperature. Application of relatively fast MMC sensors provides excellent energy resolution, powerful discrimination of internal alpha particles, effective pulse-shape discrimination of randomly coinciding events of two-neutrino double-beta decay of 100Mo. In its first phase, the AMoRE-10 will use about 10 kg of CMO crystals. As a next step, the AMoRE-200 is going to build about 200 kg detector to reach a half-life sensitivity on the level of 1026 years with an aim to explore inverted hierarchy region of the effective Majorana neutrino mass 0.02 - 0.05 eV. Recent progress on the calcium molybdate detectors developments at room and milli-Kelvin temperatures as well as background study based on Monte Carlo simulations will be presented.

  14. Comparative analysis of 16S rRNA and amoA genes from archaea selected with organic and inorganic amendments in enrichment culture.

    PubMed

    Xu, Mouzhong; Schnorr, Jon; Keibler, Brandon; Simon, Holly M

    2012-04-01

    We took advantage of a plant-root enrichment culture system to characterize mesophilic soil archaea selected through the use of organic and inorganic amendments. Comparative analysis of 16S rRNA and amoA genes indicated that specific archaeal clades were selected under different conditions. Three amoA sequence clades were identified, while for a fourth group, identified by 16S rRNA gene analysis alone and referred to as the "root" clade, we detected no corresponding amoA gene. The amoA-containing archaea were present in media with either organic or inorganic amendments, whereas archaea representing the root clade were present only when organic amendment was used. Analysis of amoA gene abundance and expression, together with nitrification-coupled growth assays, indicated potential growth by autotrophic ammonia oxidation for members of two group 1.1b clades. Increased abundance of one of these clades, however, also occurred upon the addition of organic amendment. Finally, although amoA-containing group 1.1a archaea were present in enrichments, we detected neither expression of amoA genes nor evidence for nitrification-coupled growth of these organisms. These data support a model of a diverse metabolic community in mesophilic soil archaea that is just beginning to be characterized.

  15. Dr Amos G Babcock - fact or fiction?

    PubMed

    Smith, Douglas

    2014-11-01

    The War of 1812-14 between the United States of America and Great Britain gave rise to several journals relating the sufferings of prisoners of war confined in prison ships and gaols in England. One of these is A Journal of a Young Man from Massachusetts, said to have been written by Dr Amos G Babcock, an American ship's surgeon, and first published in 1816. This article sets out arguments for and against the truth of this assertion. © The Author(s) 2013 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

  16. Controls on boron and germanium distribution in the low-sulfur Amos coal bed, Western Kentucky coalfield, USA

    USGS Publications Warehouse

    Hower, J.C.; Ruppert, L.F.; Williams, D.A.

    2002-01-01

    The Duckmantian-aged Amos coal bed is a thin (<51 cm) coal bed that occurs in lobate southwest-trending pods separated by thin sandstones in the Western Kentucky coalfield. The coal bed, which is comprised of up to two benches and a rider coal, is low in ash yield (<6%) and sulfur content (<1%). The coal tends to be thin (<40 cm), but it was heavily mined in the 1980s because it could be combusted as mined. Geochemical analysis of the Amos coal bed shows higher concentrations of B and Ge than other Western Kentucky coal beds. High total B concentrations as well as high B/Be, both considered to be indicators of marine environments, increase toward the top of the coal bed. Most of the B values for the Amos samples range from 66 to 103 ppm (whole coal basis) indicating deposition in a brackish environment. High Ge concentrations in coals have been considered to be a function of seam thickness and proximity to the top and bottom of the coal bed. Thin coals, such as the Amos, are dominated by the coal bed margins and, therefore, have a tendency to have relatively high Ge concentrations. In the case of the Amos coal bed, the lower bench has a higher Ge content, suggesting that the substrate was a more important source of Ge than the roof rock. ?? 2002 Elsevier Science B.V. All rights reserved.

  17. Sedimentary archaeal amoA gene abundance reflects historic nutrient level and salinity fluctuations in Qinghai Lake, Tibetan Plateau

    PubMed Central

    Yang, Jian; Jiang, Hongchen; Dong, Hailiang; Hou, Weiguo; Li, Gaoyuan; Wu, Geng

    2015-01-01

    Integration of DNA derived from ancient phototrophs with their characteristic lipid biomarkers has been successfully employed to reconstruct paleoenvironmental conditions. However, it is poorly known that whether the DNA and lipids of microbial functional aerobes (such as ammonia-oxidizing archaea: AOA) can be used for reconstructing past environmental conditions. Here we identify and quantify the AOA amoA genes (encoding the alpha subunit of ammonia monooxygenases) preserved in a 5.8-m sediment core (spanning the last 18,500 years) from Qinghai Lake. Parallel analyses revealed that low amoA gene abundance corresponded to high total organic carbon (TOC) and salinity, while high amoA gene abundance corresponded to low TOC and salinity. In the Qinghai Lake region, TOC can serve as an indicator of paleo-productivity and paleo-precipitation, which is related to historic nutrient input and salinity. So our data suggest that temporal variation of AOA amoA gene abundance preserved in Qinghai Lake sediment may reflect the variations of nutrient level and salinity throughout the late Pleistocene and Holocene in the Qinghai Lake region. PMID:26666501

  18. The influences of the AMO and NAO on the sedimentary infill in an Azores Archipelago lake since ca. 1350 CE

    NASA Astrophysics Data System (ADS)

    Hernández, Armand; Sáez, Alberto; Bao, Roberto; Raposeiro, Pedro M.; Trigo, Ricardo M.; Doolittle, Sara; Masqué, Pere; Rull, Valentí; Gonçalves, Vítor; Vázquez-Loureiro, David; Rubio-Inglés, María J.; Sánchez-López, Guiomar; Giralt, Santiago

    2017-07-01

    The location of the Azores Archipelago in the North Atlantic makes this group of islands an excellent setting to study the long-term behavior of large oceanic and atmospheric climate dynamic patterns, such as the Atlantic Multidecadal Oscillation (AMO) and the North Atlantic Oscillation (NAO). Here, we present the impacts of these patterns on Lake Empadadas (Azores Archipelago) from the Medieval Climate Anomaly (MCA) - Little Ice Age (LIA) transition to the present based on sedimentological, geochemical and biological characterizations of the sedimentary record. Multivariate analyses of a number of proxies including X-ray fluorescence (XRF), X-ray diffraction (XRD), total organic and inorganic carbon (TOC and TIC) and diatom life forms abundance reveal that the sedimentary infill evolution has been controlled by (i) fluctuations in the lake level and (ii) variations in organic matter accumulation. Both processes are governed by climate variability and modulated by anthropogenic activities associated with changes on the lake catchment. Changes in these two sedimentary processes have been used to infer five stages: (i) the MCA-LIA transition (ca. 1350-1450 CE) was characterized by a predominantly positive AMO phase, which led to intermediate lake levels and high organic matter concentration; (ii) the first half of the LIA (ca. 1450-1600 CE) was characterized by predominant lowstand conditions and intermediate organic matter deposition mainly related to negative AMO phases; (iii) the second half of the LIA (ca. 1600-1850 CE) was characterized by negative AMO and NAO phases, implying intermediate lake levels and high organic matter deposition; (iv) the Industrial era (ca. 1850-1980 CE) was characterized by the lowest lake level and organic matter accumulation associated with negative AMO phases; and (v) the period spanning between 1980 CE and the present reveals the highest lake levels and low organic matter deposition, being associated with very positive AMO

  19. [Effect of long-term application of nitrogen fertilizer on the diversity of nitrifying genes (amoA and hao) in paddy soil].

    PubMed

    Chen, Chun-lan; Wu, Min-na; Wei, Wen-xue

    2011-05-01

    The aim of this study was to determine the effect of long-term (16 years) application of nitrogen fertilizer on the diversity of nitrifying genes (amoA and hao) in paddy soil on the basis of long-term paddy field experimental station (started in 1990) located in Taoyuan, with the molecular approaches of PCR, constructing libraries and sequencing. The fertilizer was urea and no fertilizer was as control. The Shannon index showed that long-term application of nitrogen fertilizer made the diversity of amoA gene descend while no effect on the diversity of hao gene. The LIBSHUFF statistical analyses demonstrated that both amoA and hao libraries of CK and N treatments were significantly different from each other and the rarefaction curves of libraries failed to meet the plateaus indicating that there were lots kinds of genes haven't been detected. The results of blasting with GenBank and the phylogenetic tree showed that the amoA genes detected in our study had a similarity with the uncultured gene of amoA, which showed some similar to Nitrosospira. Otherwise, the hao genes cloned showed a relationship to the genes of cultured bacteria such as Silicibacteria, Nitrosospira and Methylococcus, and the hao genes found in the N treatment dominated in alpha-Proteobacteria. These results suggest that long-term fertilization of nitrogen had significant impacts on the diversity or community of amoA and hao genes.

  20. Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

    PubMed Central

    Mußmann, Marc; Brito, Ivana; Pitcher, Angela; Sinninghe Damsté, Jaap S.; Hatzenpichler, Roland; Richter, Andreas; Nielsen, Jeppe L.; Nielsen, Per Halkjær; Müller, Anneliese; Daims, Holger; Wagner, Michael; Head, Ian M.

    2011-01-01

    Nitrification is a core process in the global nitrogen cycle that is essential for the functioning of many ecosystems. The discovery of autotrophic ammonia-oxidizing archaea (AOA) within the phylum Thaumarchaeota has changed our perception of the microbiology of nitrification, in particular since their numerical dominance over ammonia-oxidizing bacteria (AOB) in many environments has been revealed. These and other data have led to a widely held assumption that all amoA-encoding members of the Thaumarchaeota (AEA) are autotrophic nitrifiers. In this study, 52 municipal and industrial wastewater treatment plants were screened for the presence of AEA and AOB. Thaumarchaeota carrying amoA were detected in high abundance only in four industrial plants. In one plant, thaumarchaeotes closely related to soil group I.1b outnumbered AOB up to 10,000-fold, and their numbers, which can only be explained by active growth in this continuous culture system, were two to three orders of magnitude higher than could be sustained by autotrophic ammonia oxidation. Consistently, 14CO2 fixation could only be detected in AOB but not in AEA in actively nitrifying sludge from this plant via FISH combined with microautoradiography. Furthermore, in situ transcription of archaeal amoA, and very weak in situ labeling of crenarchaeol after addition of 13CO2, was independent of the addition of ammonium. These data demonstrate that some amoA-carrying group I.1b Thaumarchaeota are not obligate chemolithoautotrophs. PMID:21930919

  1. Isolation and characterization of a novel ammonium overly sensitive mutant, amos2, in Arabidopsis thaliana.

    PubMed

    Li, Guangjie; Dong, Gangqiang; Li, Baohai; Li, Qing; Kronzucker, Herbert J; Shi, Weiming

    2012-02-01

    Ammonium (NH(4)(+)) toxicity is a significant agricultural problem globally, compromising crop growth and productivity in many areas. However, the molecular mechanisms of NH(4)(+) toxicity are still poorly understood, in part due to a lack of valuable genetic resources. Here, a novel Arabidopsis mutant, amos2 (ammonium overly sensitive 2), displaying hypersensitivity to NH(4) (+) in both shoots and roots, was isolated. The mutant exhibits the hallmarks of NH(4)(+) toxicity at significantly elevated levels: severely suppressed shoot biomass, increased leaf chlorosis, and inhibition of lateral root formation. Amos2 hypersensitivity is associated with excessive NH(4)(+) accumulation in shoots and a reduction in tissue potassium (K(+)), calcium (Ca(2+)), and magnesium (Mg(2+)). We show that the lesion is specific to the NH(4)(+) ion, is independent of NH(4)(+) metabolism, and can be partially rescued by elevated external K(+). The amos2 lesion was mapped to a 16-cM interval on top of chromosome 1, where no similar mutation has been previously mapped. Our study identifies a novel locus controlling cation homeostasis under NH(4)(+) stress and provides a tool for the future identification of critical genes involved in the development of NH(4)(+) toxicity.

  2. Pesticide Side Effects in an Agricultural Soil Ecosystem as Measured by amoA Expression Quantification and Bacterial Diversity Changes

    PubMed Central

    Feld, Louise; Hjelmsø, Mathis Hjort; Nielsen, Morten Schostag; Jacobsen, Anne Dorthe; Rønn, Regin; Ekelund, Flemming; Krogh, Paul Henning; Strobel, Bjarne Westergaard; Jacobsen, Carsten Suhr

    2015-01-01

    Background and Methods Assessing the effects of pesticide hazards on microbiological processes in the soil is currently based on analyses that provide limited insight into the ongoing processes. This study proposes a more comprehensive approach. The side effects of pesticides may appear as changes in the expression of specific microbial genes or as changes in diversity. To assess the impact of pesticides on gene expression, we focused on the amoA gene, which is involved in ammonia oxidation. We prepared soil microcosms and exposed them to dazomet, mancozeb or no pesticide. We hypothesized that the amount of amoA transcript decreases upon pesticide application, and to test this hypothesis, we used reverse-transcription qPCR. We also hypothesized that bacterial diversity is affected by pesticides. This hypothesis was investigated via 454 sequencing and diversity analysis of the 16S ribosomal RNA and RNA genes, representing the active and total soil bacterial communities, respectively. Results and Conclusion Treatment with dazomet reduced both the bacterial and archaeal amoA transcript numbers by more than two log units and produced long-term effects for more than 28 days. Mancozeb also inhibited the numbers of amoA transcripts, but only transiently. The bacterial and archaeal amoA transcripts were both sensitive bioindicators of pesticide side effects. Additionally, the numbers of bacterial amoA transcripts correlated with nitrate production in N-amended microcosms. Dazomet reduced the total bacterial numbers by one log unit, but the population size was restored after twelve days. The diversity of the active soil bacteria also seemed to be re-established after twelve days. However, the total bacterial diversity as reflected in the 16S ribosomal RNA gene sequences was largely dominated by Firmicutes and Proteobacteria at day twelve, likely reflecting a halt in the growth of early opportunists and the re-establishment of a more diverse population. We observed no

  3. The North Atlantic Oscillation as a driver of multidecadal variability of the AMOC, the AMO, and Northern Hemisphere climate

    NASA Astrophysics Data System (ADS)

    Delworth, T. L.; Zeng, F. J.; Yang, X.; Zhang, L.

    2017-12-01

    We use suites of simulations with coupled ocean-atmosphere models to show that multidecadal changes in the North Atlantic Oscillation (NAO) can drive multidecadal changes in the Atlantic Meridional Overturning Circulation (AMOC) and the Atlantic Multidecadal Oscillation (AMO), with associated hemispheric climatic impacts. These impacts include rapid changes in Arctic sea ice, hemispheric temperature, and modulation of Atlantic hurricane activity. We use models that incorporate either a fully dynamic ocean or a simple slab ocean to explore the role of ocean dynamics and ocean-atmosphere interactions. A positive phase of the NAO is associated with strengthened westerly winds over the North Atlantic. These winds extract more heat than normal from the subpolar ocean, thereby increasing upper ocean density, deepwater formation, and the strength of the AMOC and associated poleward ocean heat transport. This warming leads to a positive phase of the AMO. The enhanced oceanic heat transport extends to the Arctic where it causes a reduction of Arctic sea ice. Large-scale atmospheric warming reduces vertical wind shear in the tropical North Atlantic, creating an environment more favorable for tropical storms. We use models to further show that observed multidecadal variations of the NAO over the 20th and early 21st centuries may have led to multidecadal variations of simulated AMOC and the AMO. Specifically, negative NAO values from the late 1960s through the early 1980s led to a weakened AMOC/cold North Atlantic, whereas increasing NAO values from the late 1980s through the late 1990s increased the model AMOC and led to a positive (warm) phase of the AMO. The warm phase contributed to increases in tropical storm activity and decreases in Arctic sea ice after the mid 1990s. Ocean dynamics are essential for translating the observed NAO variations into ocean heat content variations for the extratropical North Atlantic, but appear less important in the tropical North Atlantic

  4. Overview of the Publications From the Anthroposophic Medicine Outcomes Study (AMOS): A Whole System Evaluation Study

    PubMed Central

    Kiene, Helmut; Ziegler, Renatus; Tröger, Wilfried; Meinecke, Christoph; Schnürer, Christof; Vögler, Hendrik; Glockmann, Anja; Kienle, Gunver Sophia

    2014-01-01

    Anthroposophic medicine is a physician-provided complementary therapy system that was founded by Rudolf Steiner and Ita Wegman. Anthroposophic therapy includes special medicinal products, artistic therapies, eurythmy movement exercises, and special physical therapies. The Anthroposophic Medicine Outcomes Study (AMOS) was a prospective observational multicenter study of 1631 outpatients starting anthroposophic therapy for anxiety disorders, asthma, attention deficit hyperactivity disorder, depression, low back pain, migraine, and other chronic indications under routine conditions in Germany. AMOS incorporated two features proposed for the evaluation of integrative therapy systems: (1) a sequential approach, starting with the whole therapy system (use, safety, outcomes, perceived benefit), addressing comparative effectiveness and proceeding to the major system components (physician counseling, anthroposophic medicinal products, art therapy, eurythmy therapy, rhythmical massage therapy) and (2) a mix of different research methods to build an information synthesis, including pre-post analyses, prospective comparative analyses, economic analyses, and safety analyses of individual patient data. AMOS fostered two methodological innovations for the analysis of single-arm therapy studies (combined bias suppression, systematic outcome comparison with corresponding cohorts in other studies) and the first depression cost analysis worldwide comparing primary care patients treated for depression vs depressed patients treated for another disorder vs nondepressed patients. A total of 21 peer-reviewed publications from AMOS have resulted. This article provides an overview of the main research questions, methods, and findings from these publications: anthroposophic treatment was safe and was associated with clinically relevant improvements in symptoms and quality of life without cost increase; improvements were found in all age, diagnosis, and therapy modality groups and were

  5. Overview of the Publications From the Anthroposophic Medicine Outcomes Study (AMOS): A Whole System Evaluation Study.

    PubMed

    Hamre, Harald Johan; Kiene, Helmut; Ziegler, Renatus; Tröger, Wilfried; Meinecke, Christoph; Schnürer, Christof; Vögler, Hendrik; Glockmann, Anja; Kienle, Gunver Sophia

    2014-01-01

    Anthroposophic medicine is a physician-provided complementary therapy system that was founded by Rudolf Steiner and Ita Wegman. Anthroposophic therapy includes special medicinal products, artistic therapies, eurythmy movement exercises, and special physical therapies. The Anthroposophic Medicine Outcomes Study (AMOS) was a prospective observational multicenter study of 1631 outpatients starting anthroposophic therapy for anxiety disorders, asthma, attention deficit hyperactivity disorder, depression, low back pain, migraine, and other chronic indications under routine conditions in Germany. AMOS INCORPORATED TWO FEATURES PROPOSED FOR THE EVALUATION OF INTEGRATIVE THERAPY SYSTEMS: (1) a sequential approach, starting with the whole therapy system (use, safety, outcomes, perceived benefit), addressing comparative effectiveness and proceeding to the major system components (physician counseling, anthroposophic medicinal products, art therapy, eurythmy therapy, rhythmical massage therapy) and (2) a mix of different research methods to build an information synthesis, including pre-post analyses, prospective comparative analyses, economic analyses, and safety analyses of individual patient data. AMOS fostered two methodological innovations for the analysis of single-arm therapy studies (combined bias suppression, systematic outcome comparison with corresponding cohorts in other studies) and the first depression cost analysis worldwide comparing primary care patients treated for depression vs depressed patients treated for another disorder vs nondepressed patients. A total of 21 peer-reviewed publications from AMOS have resulted. This article provides an overview of the main research questions, methods, and findings from these publications: anthroposophic treatment was safe and was associated with clinically relevant improvements in symptoms and quality of life without cost increase; improvements were found in all age, diagnosis, and therapy modality groups and were

  6. The influences of the AMO and NAO on an Iberian alpine lake during the Late Holocene

    NASA Astrophysics Data System (ADS)

    Hernández, Armand; Leira, Manel; Trigo, Ricardo; Vázquez-Loureiro, David; Carballeira, Rafael; Sáez, Alberto

    2017-04-01

    High mountain lakes, usually oligotrophic, in the Iberian Peninsula are particularly sensitive to the influence of North Atlantic large-scale modes of climate variability due to their geographical position and the reduced direct anthropic disturbances. In this context, Serra da Estrela (Portugal), in the westernmost of the Sistema Central Range, constitutes a physical barrier to air masses coming from the Atlantic Ocean. However, long-term climate reconstructions have not yet been conducted. We present a climate reconstruction in terms of precipitation and temperature changes of this setting based on facies analysis, X-ray fluorescence core scanning, elemental and isotope geochemistry on bulk organic matter and a preliminary study of diatom assemblages from the sedimentary record of Lake Peixão (1677 m a.s.l.; Serra da Estrela) for the last ca. 3500 years. A multivariate statistical analysis has been performed to recognize the main environmental factors controlling the lake sedimentation. Our results reveal that two main processes explain 70% of the total variance, with PC1 (accumulation of siliciclastic material vs organic matter), and PC2 (variations in lacustrine productivity, related to nutrient inputs from the catchment), explaining 53% and 17% respectively. In mountain lakes, siliciclastic and/or external organic matter accumulation tend to be governed by the snowmelt which, in turn, are frequently controlled by winter and spring temperatures. On the other hand, lake productivity, usually limited by phosphorus and nitrogen, is dependent of internal recycling and/or external inputs, mainly by catchment leaching (climatically driven by summer precipitation) and atmospheric deposition (anthropic influence). The results from Lake Peixão have been compared to other Western Iberia and Northeastern Atlantic records, as well as the Atlantic Multidecadal Oscillation (AMO) and North Atlantic Oscillation (NAO) indices. Thus, a tentative Late Holocene climate

  7. The Amos decision: will we see changes in the workplace?

    PubMed

    Rogers, J W; Stromberger, P M

    1988-01-01

    A recent decision by the U.S. Supreme Court (in Corporation of the Presiding Bishop v. Amos) upheld, and slightly expanded, the exemption of religious organizations from the Title VII prohibitions against discrimination on the basis of religion, as stated in amended Section 702 of the Civil Rights Act of 1964. How this decision will affect hiring practices, if at all, among Catholic healthcare institutions remains to be seen, but the potential for change is inherent. The Amos case now allows organizations to expand the area of questions to include a person's religious affiliation, beliefs, and values. Based on the facts of this case, it would also allow a religious employer to inquire as to that person's religious practices and his or her standing in the Church. While the authors point to the traditional Catholic practice of openness in "hiring catholic" as evidence that the ruling will have minimal impact in day-to-day personnel decision making, they note the door is open to allow changes, and pressures to change may mount. Certain employment decisions for leadership positions, including those of an organizational, corporate, and business nature, may now include clearly religious criteria. In addition, the declining number of religious members in may religious institutes that sponsor healthcare facilities may put additional pressure on those institutions to "hire Catholic" when selecting lay leaders to ensure that the employer's mission and values will be carried out.

  8. Amos Brown and the American Land Grant College Movement. ASHE Annual Meeting Paper.

    ERIC Educational Resources Information Center

    Lang, Daniel W.

    This paper reviews the effects of the Agricultural College Act (1862), which established land grant colleges, on higher education in the United States, focusing largely on the role of Amos Brown, president of The People's College in New York, which served as a model for the Agricultural College Act. Brown's role in the founding of the college in…

  9. A Centrifugal Volcanism Mechanism for the AMO

    NASA Astrophysics Data System (ADS)

    Pratt, V. R.

    2016-12-01

    The Atlantic Multidecadal Oscillation has proved hard to isolate from both (i) global warming and (ii) faster oscillations. For (i), we showed [1] that by filtering all harmonics of a 63-year period, what remained could be explained remarkably accurately by the expected contribution of greenhouse warming along with the interesting increase in TSI during 1900-1950, leading to considerable confidence that global surface temperature averaged over 2069-2131 will be very close to 3 C above preindustrial. For (ii), principal component analysis of HadCRUT4 since 1850, Central England Temperature since 1659, and various other land and sea time series all show a distinct 21-year oscillation the start of whose downward swing is well synchronized with the maximum solar activity of the odd-numbered solar cycles, persisting even through the Maunder Minimum. After these are removed there remains a well-defined signal that has been associated with the so-called Atlantic Multidecadal Oscillation. There are two schools of thought, the AMO is of either radiative (RAD) or internal (INT) origin. RAD is explained in terms of aerosol fluctuations of volcanic origin. In [2] we gave what we felt was a knockdown argument against RAD. INT so far has been explained mainly in terms of instabilities in ocean currents such as the Atlantic Meridional Overturning Current. An interesting correlation between the AMO and Earth's Length of Day (LOD) has been noted by several authors. Missing is a plausible mechanism explaining this correlation. The mechanism we propose here is that magma welling up through ocean ridges is in a quasi-equilibrium that even small fluctuations in LOD can disturb significantly. Heat from emerging magma is carried up to the oceanic mixed layer in very large thermals. A simple model of this process leads to a correlation that is excellent except for the period 1940-1950. We propose to explain this difference in terms of a lifting of the crust by the excess magma developed

  10. A 25.5 percent AMO gallium arsenide grating solar cell

    NASA Technical Reports Server (NTRS)

    Weizer, V. G.; Godlewski, M. P.

    1985-01-01

    Recent calculations have shown that significant open circuit voltage gains are possible with a dot grating junction geometry. The feasibility of applying the dot geometry to the GaAs cell was investigated. This geometry is shown to result in voltages approach 1.120 V and efficiencies well over 25 percent (AMO) if good collection efficiency can be maintained. The latter is shown to be possible if one chooses the proper base resistivity and cell thickness. The above advances in efficiency are shown to be possible in the P-base cell with only minor improvements in existing technology.

  11. Single crystal and polycrystalline GaAs solar cells using AMOS technology

    NASA Technical Reports Server (NTRS)

    Stirn, R. J.; Yeh, Y. C. M.

    1976-01-01

    A description is given of current technology for fabricating single AMOS (antireflection-coated metal oxide semiconductor) solar cells, with attention given to thermal, plasma, and anodic oxidation, native oxide stripping, and X-ray photoelectron spectroscopy results. Some preliminary results are presented on the chemistry and electrical characterization of such cells, and the characteristics of cells fabricated on sliced polycrystalline GaAs wafers are examined. Consideration is also given to the recrystallization of evaporated Ge films for use as low-cost substrates for polycrystalline GaAs solar cells.

  12. Peroxy Radical Measurements during PROPHET-AMOS 2016

    NASA Astrophysics Data System (ADS)

    Wood, E. C. D.; Deming, B.; Rollings, D.

    2016-12-01

    We present measurements of total peroxy radicals (HO2 + RO2) using the Ethane Chemical Amplifier (ECHAMP) technique during the PROPHET-AMOS project in Pellston, Michigan during July 2016. The C2H6/NO amplification chemistry occurred in FEP reaction chambers at the top of the PROPHET tower at a height of 34 m. The NO2 amplification product was transported through tubing to two cavity attenuated phase shift spectrometers (CAPS) housed inside the PROPHET laboratory. Two calibration sources were used: one based on water photolysis in the presence of isoprene and ozone actinometry, and another based on methyl iodide (CH3I) photolysis. The former was integrated into the inlet system, allowing for daily calibrations, whereas the latter was used twice during the campaign. Peak mixing ratios on warm, sunny days were approximately 40 ppt. Nighttime concentrations varied from below the instrumental detection limit to approximately 5 ppt. The measured peroxy radical concentrations will be compared to HO2 and HO2* mixing ratios measured by the Indiana University LIF-FAGE instrument.

  13. Contexts and Functions of Music in the "Orbis Sensualium Pictus" Textbook by John Amos Comenius

    ERIC Educational Resources Information Center

    Szórádová, Eva

    2015-01-01

    The present study deals with the content-related and thematic, as well as visual and semantic, contexts in which musical motifs, and words and notions with a musical meaning, are placed in the "Orbis sensualium pictus" textbook of John Amos Comenius. They can be found in several places in the textbook in both its textual and pictorial…

  14. A More Comprehensive Community of Ammonia-Oxidizing Archaea (AOA) Revealed by Genomic DNA and RNA Analyses of amoA Gene in Subtropical Acidic Forest Soils.

    PubMed

    Wu, Ruo-Nan; Meng, Han; Wang, Yong-Feng; Lan, Wensheng; Gu, Ji-Dong

    2017-11-01

    Ammonia-oxidizing bacteria (AOB) and archaea (AOA) are the main nitrifiers which are well studied in natural environments, and AOA frequently outnumber AOB by orders especially in acidic conditions, making AOA the most promising ammonia oxidizers. The phylogeny of AOA revealed in related studies, however, often varied and hardly reach a consensus on functional phylotypes. The objective of this study was to compare ammonia-oxidizing communities by amoA gene and transcript based on both genomic DNA and RNA in extremely acidic forest soils (pH <4.5). Our results support the numerical and functional dominance of AOA over AOB in acidic soils as bacterial amoA gene and transcript were both under detection limits and archaeal amoA, in contrast, were abundant and responded to the fluctuations of environmental factors. Organic matter from tree residues was proposed as the main source of microbial available nitrogen, and the potential co-precipitation of dissolved organic matter (DOM) with soluble Al 3+ species in acidic soil matrix may further restrict the amount of nitrogen sources required by AOB besides NH 3 /NH 4 + equilibrium. Although AOA were better adapted to oligotrophic environments, they were susceptible to the toxicity of exchangeable Al 3+ . Phylotypes affiliated to Nitrososphaera, Nitrososphaera sister group, and Nitrosotalea were detected by amoA gene and transcript. Nitrosotalea devantaerra and Nitrososphaera sister group were the major AOA. Compared to the genomic DNA data, higher relative abundances of Nitrososphaera and Nitrososphaera sister group were recognized in amoA transcript inferred AOA communities, where Nitrosotalea relative abundance was found lower, implying the functional activities of Nitrososphaera sister group and Nitrososphaera were easily underestimated and Nitrosotalea did not attribute proportionally to nitrification in extremely acidic soils. Further comparison of the different AOA community compositions and relative abundance of each

  15. The near-term prediction of drought and flooding conditions in the northeastern United States based on extreme phases of AMO and NAO

    NASA Astrophysics Data System (ADS)

    Berton, Rouzbeh; Driscoll, Charles T.; Adamowski, Jan F.

    2017-10-01

    A series of hydroclimatic teleconnection patterns were identified between variations in either Atlantic or Pacific oceanic indices with precipitation and discharge anomalies in the northeastern United States. We hypothesized that temporal annual or seasonal changes in discharge could be explained by variations in extreme phases of the Atlantic Multi-decadal Oscillation (AMO index, SST: Sea Surface Temperature anomalies) and the North Atlantic Oscillation (NAO index, SLP: Sea-Level Pressure anomalies) up to three seasons in advance. The Merrimack River watershed, the fourth largest basin in New England, with a drainage area of 13,000 km2, is a compelling study site because it not only provides an opportunity to investigate the teleconnection between hydrologic variables and large-scale climate circulation patterns, but also how those patterns may become obscured by anthropogenic disturbances such as river regulation or urban development. We considered precipitation and discharge data of 21 gauging stations within the Merrimack River watershed, including the Hubbard Brook Experimental Forest (HBEF), NH, with a median record length of 55 years beginning as early as 1904. The discharge anomalies were statistically significant (p-value ≤ 0.2) between extreme positive and negative phases of AMO (1857-2011) and NAO (1900-2011) and revealed the potential teleconnectivity of climate circulation patterns with discharge. Annual and seasonal correlations of discharge were examined with the extreme phases of AMO and NAO at zero-, one-, or two- year/season lags (total of 30 scenarios). When AMO was greater than 0.2, the strongest correlations of AMO and NAO with discharge were observed at headwater catchments. This correlation weakened downstream towards larger regulated and/or developed sub-basins. We introduced a simple approach for near-term prediction of drought and flooding events. An exponential decay function was regressed through the historic occurrence of the relative

  16. Influence of Starvation on Potential Ammonia-Oxidizing Activity and amoA mRNA Levels of Nitrosospira briensis

    PubMed Central

    Bollmann, Annette; Schmidt, Ingo; Saunders, Aaron M.; Nicolaisen, Mette H.

    2005-01-01

    The effect of short-term ammonia starvation on Nitrosospira briensis was investigated. The ammonia-oxidizing activity was determined in a concentrated cell suspension with a NOx biosensor. The apparent half-saturation constant [Km(app)] value of the NH3 oxidation of N. briensis was 3 μM NH3 for cultures grown both in continuous and batch cultures as determined by a NOx biosensor. Cells grown on the wall of the vessel had a lower Km(app) value of 1.8 μM NH3. Nonstarving cultures of N. briensis showed potential ammonia-oxidizing activities of between 200 to 250 μM N h−1, and this activity decreased only slowly during starvation up to 10 days. Within 10 min after the addition of fresh NH4+, 100% activity was regained. Parallel with activity measurements, amoA mRNA and 16S rRNA were investigated. No changes were observed in the 16S rRNA, but a relative decrease of amoA mRNA was observed during the starvation period. During resuscitation, an increase in amoA mRNA expression was detected simultaneously. The patterns of the soluble protein fraction of a 2-week-starved culture of N. briensis showed only small differences in comparison to a nonstarved control. From these results we conclude that N. briensis cells remain in a state allowing fast recovery of ammonia-oxidizing activity after addition of NH4+ to a starved culture. Maintaining cells in this kind of active state could be the survival strategy of ammonia-oxidizing bacteria in nature under fluctuating NH4+ availability. PMID:15746329

  17. Asymmetric Multilevel Outphasing (AMO): A New Architecture for All-Silicon mm-Wave Transmitter ICs

    DTIC Science & Technology

    2015-06-12

    power-amplifiers for mobile basestation infrastructure and handsets. NanoSemi Inc. designs linearization solutions for analog front-ends such as...ward flexible, multi-standard radio chips, increases the need for high-precision, high-throughput and energy-efficient backend processing. The desire...peak PAE is affected by less than 1% (46 mW/(46 mW 1.8 W/0.4)) by this 64-QAM capable AMO SCS backend . 378 IEEE JOURNAL OF SOLID-STATE CIRCUITS, VOL. 48

  18. AMOS Galaxy 15 Satellite Observations and Analysis

    NASA Astrophysics Data System (ADS)

    Hall, D.

    2011-09-01

    In early April 2010, the Galaxy 15 geosynchronous satellite experienced an on-orbit anomaly. Even though the satellite's transmitters and articulating solar panel were still functioning, ground controllers lost the ability to command and maneuver the satellite. With its orbital position no longer maintained, Galaxy 15 began to drift eastward. This forced several other satellites to make collision avoidance maneuvers during the following months. Soon after the initial anomaly, Galaxy 15's operators predicted that the satellite’s reaction wheels would eventually become saturated, causing a loss of both spacecraft attitude and proper sunward orientation of the solar panels. This "off-pointing" event finally occurred in late December, ultimately leading to a depletion of Galaxy 15's batteries. This near-death experience had a fortunate side effect, however, in that it forced the satellite’s command unit to reboot and once again be able to both receive and execute ground commands. The satellite operators have since recovered control of the satellite. AMOS conducted non-resolved photometric observations of Galaxy 15 before, during and after these events. Similar observations were conducted of Galaxy 12, the nearly-identical replacement satellite. This presentation presents and discusses these temporal brightness signatures in detail, comparing the changing patterns in the observations to the known sequence of events.

  19. Reporting Florida's Annual Measurable Objectives (AMOs) in Compliance with ESEA Flexibility Requirements: Guide to Calculations for 2013-14

    ERIC Educational Resources Information Center

    Florida Department of Education, 2014

    2014-01-01

    This Annual Measurable Objective (AMO) is designed to keep Florida moving forward toward national and international competitiveness. Florida will compare its National Assessment of Educational Progress (NAEP) scores to those of the top five states and its Trends in International Mathematics and Science Study (TIMSS), Progress in International…

  20. Development of Adaptive Model Refinement (AMoR) for Multiphysics and Multifidelity Problems

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Turinsky, Paul

    This project investigated the development and utilization of Adaptive Model Refinement (AMoR) for nuclear systems simulation applications. AMoR refers to utilization of several models of physical phenomena which differ in prediction fidelity. If the highest fidelity model is judged to always provide or exceeded the desired fidelity, than if one can determine the difference in a Quantity of Interest (QoI) between the highest fidelity model and lower fidelity models, one could utilize the fidelity model that would just provide the magnitude of the QoI desired. Assuming lower fidelity models require less computational resources, in this manner computational efficiency can bemore » realized provided the QoI value can be accurately and efficiently evaluated. This work utilized Generalized Perturbation Theory (GPT) to evaluate the QoI, by convoluting the GPT solution with the residual of the highest fidelity model determined using the solution from lower fidelity models. Specifically, a reactor core neutronics problem and thermal-hydraulics problem were studied to develop and utilize AMoR. The highest fidelity neutronics model was based upon the 3D space-time, two-group, nodal diffusion equations as solved in the NESTLE computer code. Added to the NESTLE code was the ability to determine the time-dependent GPT neutron flux. The lower fidelity neutronics model was based upon the point kinetics equations along with utilization of a prolongation operator to determine the 3D space-time, two-group flux. The highest fidelity thermal-hydraulics model was based upon the space-time equations governing fluid flow in a closed channel around a heat generating fuel rod. The Homogenous Equilibrium Mixture (HEM) model was used for the fluid and Finite Difference Method was applied to both the coolant and fuel pin energy conservation equations. The lower fidelity thermal-hydraulic model was based upon the same equations as used for the highest fidelity model but now with coarse

  1. A first insight into the occurrence and expression of functional amoA and accA genes of autotrophic and ammonia-oxidizing bathypelagic Crenarchaeota of Tyrrhenian Sea

    NASA Astrophysics Data System (ADS)

    Yakimov, Michail M.; Cono, Violetta La; Denaro, Renata

    2009-05-01

    The autotrophic and ammonia-oxidizing crenarchaeal assemblage at offshore site located in the deep Mediterranean (Tyrrhenian Sea, depth 3000 m) water was studied by PCR amplification of the key functional genes involved in energy (ammonia mono-oxygenase alpha subunit, amoA) and central metabolism (acetyl-CoA carboxylase alpha subunit, accA). Using two recently annotated genomes of marine crenarchaeons, an initial set of primers targeting archaeal accA-like genes was designed. Approximately 300 clones were analyzed, of which 100% of amoA library and almost 70% of accA library were unambiguously related to the corresponding genes from marine Crenarchaeota. Even though the acetyl-CoA carboxylase is phylogenetically not well conserved and the remaining clones were affiliated to various bacterial acetyl-CoA/propionyl-CoA carboxylase genes, the pool of archaeal sequences was applied for development of quantitative PCR analysis of accA-like distribution using TaqMan ® methodolgy. The archaeal accA gene fragments, together with alignable gene fragments from the Sargasso Sea and North Pacific Subtropical Gyre (ALOHA Station) metagenome databases, were analyzed by multiple sequence alignment. Two accA-like sequences, found in ALOHA Station at the depth of 4000 m, formed a deeply branched clade with 64% of all archaeal Tyrrhenian clones. No close relatives for residual 36% of clones, except of those recovered from Eastern Mediterranean, was found, suggesting the existence of a specific lineage of the crenarchaeal accA genes in deep Mediterranean water. Alignment of Mediterranean amoA sequences defined four cosmopolitan phylotypes of Crenarchaeota putative ammonia mono-oxygenase subunit A gene occurring in the water sample from the 3000 m depth. Without exception all phylotypes fell into Deep Marine Group I cluster that contain the vast majority of known sequences recovered from global deep-sea environment. Remarkably, three phylotypes accounted for 91% of all Mediterranean

  2. The impact of AMO and NAO in Western Iberia during the Late Holocene

    NASA Astrophysics Data System (ADS)

    Hernandez, A.; Leira, M.; Trigo, R.; Vázquez-Loureiro, D.; Carballeira, R.; Sáez, A.

    2016-12-01

    High mountain lakes in the Iberian Peninsula are particularly sensitive to the influence of North Atlantic large-scale modes of climate variability due to their geographical position and the reduced anthropic disturbances. In this context, Serra da Estrela (Portugal), the westernmost range of the Sistema Central, constitutes a physical barrier to air masses coming from the Atlantic Ocean. However, long-term climate reconstructions have not yet been conducted. We present a climate reconstruction of this region based on facies analysis, X-ray fluorescence core scanning, elemental and isotope geochemistry on bulk organic matter and a preliminary study of diatom assemblages from the sedimentary record of Lake Peixão (1677 m a.s.l.; Serra da Estrela) for the last ca. 3500 years. A multivariate statistical analysis has been performed to recognize the main environmental factors controlling the sedimentary infill. Our results reveal that two main processes explain the 70% of the total variance. Thus, changes in primary productivity, reflected in organic matter accumulation, and variations in runoff, related to external particles input, explain 53% and 17% respectively. Additionally, evidence of changes in productivity and water level regime recorded as variations in diatom assemblages correlate well with our interpretations. A comparison between the lake productivity changes and previous Atlantic Multidecadal Oscillation (AMO) reconstructions shows a good correlation, suggesting this climate mode as the main driver over lacustrine primary productivity at multi-decadal scales. In turn, changes in terrigenous inputs, linked to precipitation, seem to be more influenced by the winter North Atlantic Oscillation (NAO) variability. Hence, our results highlight that although the climate regime in this area is clearly influenced by the NAO, the AMO also plays a key role at long-term time-scales.

  3. HOxROx Measurments of Highly-Oxidized Multifunctional Compounds Species During PROPHET AMOS

    NASA Astrophysics Data System (ADS)

    Mauldin, L.; Cantrell, C. A.; Nowak, J. B.; Canagaratna, M. R.

    2017-12-01

    An instrument/technique (termed HOxROx) has been developed which allows an entire suite of oxidation products (H2SO4 and Highly-Oxidized Multifunctional compounds, HOMs) to be measured along with the concentrations of the key radical species OH and HO2+RO2. The system combines the techniques for chemical conversion of OH or HO2+RO2 into H2SO4 together with nitrate ion (NO3-) Chemical Ionization (CI) and Atmospheric Pressure interface - Time of Flight Mass Spectrometer (NO3- CI-APi-ToF) which has been previously used for the detection of HOMs and a few other oxygenated organic species. The system exhibits the same sensitivity towards OH or HO2+RO2 as previous quadrupole chemical ionization (CIMS) measurements with limits of detection of 2 x 105 and 2 x 106 molecule cm-3 for OH and HO2+RO2respectively. Unlike previous CIMS measurements, the use of a ToF mass spectrometer allows the acquisition of the entire mass spectrum at high resolution with each measurement, letting one to see how the organic species behave when the sample flow is perturbed with reagent gasses (SO2 or NO). Measurements of HOMs obtained during the Program for Research on Oxidants; Photochemistry, Emissions and Transport - Atmospheric Measurements of Oxidants in Summer (PROPHET AMOS) study with the HOxROx system will be presented. The PROPHET AMOS site in northern Michigan is an isoprene rich environment and many HOM species from isoprene oxidation are observed. These data show that peaks previously ascribed to species such as RO2 radicals do not behave as expected when exposed to the large concentrations of NO2 or SO2 used in the measurement of OH or HO2+RO2. Positive Matrix Factorization (PMF) analysis of these data will also be presented. While the combination of these measurements into one instrument is of great practical value, it is the comparison of these data within the spectra obtained in each mode that extends the information far beyond the measurements themselves.

  4. [Abundances of ammonia-oxidizing archaeal accA and amoA genes in response to NO2 - and NO3 - of hot springs in Yunnan province].

    PubMed

    Song, Zhaoqi; Wang, Li; Zhou, Enmin; Wang, Fengping; Xiao, Xiang; Zhang, Chuanlun; Li, Wenjun

    2014-12-04

    Yunnan hot springs have highly diverseammonia-oxidizing archaea (AOA), which are autotrophic and can fix CO2 using the 3-hydroxypropionate/ 4-hydroxybutyrate (HP/HD) pathway. In this study, we investigated the abundances of prokaryotic 16S rRNA gene and archaeal accA and amoA genes in the sediments of hot springs of Yunnan Province, and analysed the correlations between the above gene abundances and environmental factors. We selected the sediments of twenty representative hot springs, and detected the gene abundances by quantitative polymerase chain reaction (qPCR). The principal component analysis (PCA) and the Mantel test in the R software package were performed for the correlations of gene abundance and environmental variables. The bacterial and archaeal 16S rRNA gene abundances were from 6.6 x 10(7) to 4.19 x 10(11) and from 1.27 x 10(6) to 1.51 x 10(11) copies/g sediment, respectively; Archaeal accA and amoA genes were from 8.89 x 10(3) to 6.49 x 10(5) and from 7.64 x 10(3) to 4.36 x 10(5) copies/g sediment, respectively. The results of mantel test showed that accA gene was significantly (R = 0.98, P < 0.001) correlated with amoA gene; Both of them also were correlated significantly with NO2- and NO3 -, but not with pH. The abundances of bacterial and archaeal 16S rRNA genes and the ratio between them varied significantly among Yunnan hot springs. The archaealaccA and amoA genes showed significant correlation with each other, validating our previous finding that AOA in terrestrial hot springs might acquire energy from ammonia oxidation coupled with CO2 fixation using the 3-hydroxypropionate/4-hydroxybutyrate pathway.

  5. School Public Relations and the Principalship: An Interview with Mark Bielang, President of American Association of School Administrators

    ERIC Educational Resources Information Center

    Johnson, Paul

    2011-01-01

    From returning phone calls to traversing the political landscape to building trust, American Association of School Administrators (AASA) president Mark Bielang covers a lot of territory as he describes the public relations challenges confronting today's school administrators. Having just concluded his term as AASA president, Mr. Bielang has served…

  6. Cerium neodymium oxide solid solution synthesis as a potential analogue for substoichiometric AmO2 for radioisotope power systems

    NASA Astrophysics Data System (ADS)

    Watkinson, E. J.; Ambrosi, R. M.; Williams, H. R.; Sarsfield, M. J.; Stephenson, K.; Weston, D. P.; Marsh, N.; Haidon, C.

    2017-04-01

    The European Space Agency (ESA) is sponsoring a research programme on the development of americium oxides for radioisotope generators and heater units. Cubic AmO2-(x/2) with an O/Am ratio between 1.65 and 1.75 is a potentially suitable compound for pellet sintering. C-type (Ia-3) Ce1-xNdxO2-(x/2) oxides with 0.5 < x < 0.7 could be used as a surrogate for some Ia-3 AmO2-(x/2). A new Ce1-xNdxO2-(x/2) production process has been investigated where a nominally selected x value of 0.6 was targeted: Ce and Nd nitrates and oxalic acid were added drop-wise into a vessel, where they continuously reacted to create oxalate precipitates. The effect of temperature (25 °C, 60 °C) of the reactants (mixed at 250 revolutions per minute) on oxalate particle shape and size were investigated. Oxalates were calcined at 900 °C to produce oxide particles. Oxalate particle properties were characterised as these are expected to influence oxides particle properties and fuel pellet sintering.

  7. Impact of the Economic Downturn on Schools. Report of Findings

    ERIC Educational Resources Information Center

    McCord, Robert S.; Ellerson, Noelle M.; Jordan, K. Forbis; Jordan, Teresa; Lemons, Richard; Mattocks, T. C.; Melver, Toby; Orr, Margaret

    2008-01-01

    In Fall 2008, in response to the recent economic downturn, as evidenced in state budget shortfalls, federal buy-outs and interventions, and a series of additional events characterizing a slowing, stagnant economy, AASA examined the impact on school districts across the nation. While there are regional differences, the findings of AASA's…

  8. Weathering the Storm: How the Economic Recession Continues to Impact School Districts. Report of Findings

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.

    2012-01-01

    This study is the twelfth in a series of studies conducted by the American Association of School Administrators (AASA) on the impact of the economic downturn on schools. AASA launched the series in fall 2008 in response to state budget shortfalls, federal buyouts and interventions, and a series of additional events characterizing a slowing,…

  9. A Decadal-scale Air-sea Interaction Theory for North Atlantic Multidecadal Variability: the NAT-NAO-AMOC-AMO Coupled Mode and Its Remote Influences

    NASA Astrophysics Data System (ADS)

    Li, Jianping; Sun, Cheng; Jin, Fei-Fei

    2017-04-01

    ABSTRACT North Atlantic region shows prominent multidecadal variability. Observational analysis shows that the North Atlantic Oscillation (NAO) leads the oceanic Atlantic Multidecadal Oscillation (AMO) by 15-20 years and the latter also leads the former by around 15 years. The mechanisms are investigated using simulations from a fully coupled model, and a NATNAO-AMOC-AMO Coupled Mode is proposed to explain the multidecadal variability in North Atlantic region. The NAT-NAO-AMO-AMOC coupled mode has important remote influences on regional climates. Observational analysis identifies a significant in-phase relationship between the AMV and Siberian warm season (May to October) precipitation. The physical mechanism for this relationship is investigated using both observations and numerical simulations. North Atlantic sea surface temperature (SST) warming associated with the positive AMV phase can excite an eastward propagating wave train response across the entire Eurasian continent, which includes an east-west dipole structure over Siberia. The dipole then leads to anomalous southerly winds bringing moisture northward to Siberia; the precipitation increases correspondingly. Furthermore, a prominent teleconnection pattern of multidecadal variability of cold season (November to April) upper-level atmospheric circulation over North Africa and Eurasia (NA-EA) is revealed by empirical orthogonal function analysis of the Twentieth Century Reanalysis data, and this teleconnection pattern is referred to as the Africa-Asia multidecadal teleconnection pattern (AAMT). A strong inphase relationship is observed between the AAMT and Atlantic multidecadal variability (AMV) and this connection is mainly due to Rossby wave dynamics. The AAMT acts as an atmospheric bridge conveying the influence of AMV onto the downstream multidecadal climate variability.

  10. Fe-rich carbonate chimney in Okinawa Trough Implication for Fe-driven Microbial Anaerobic Oxidation of Methane (AMO)

    NASA Astrophysics Data System (ADS)

    Peng, X.; Guo, Z.

    2016-12-01

    Marine sediments associated with cold seeps at continental margins discharge substantial amounts of methane. Microbial anaerobic oxidation of methane (AMO) is a key biogeochemical process in these environments, which can trigger the formation of carbonate chimneys within sediments. The exact biogeochemical mechanism of how AMO control the formation of carbonate chimneys and influence their mineralogy and chemistry remains poorly constrained. Here, we use nano-scale secondary ion mass spectrometry to characterize the petrology and geochemistry of methane-derived Fe-rich carbonate chimneys formed between 5-7 Ma in the Northern Okinawa Trough. We find abundant framboid pyrites formed in the authigenic carbonates in the chimneys, indicating a non-Fe limitation sedimentary system. The δ13C values of carbonate (-18.9‰ to -45.9‰, PDB) show their probable origin from a mixing source of biogenic and thermogenic methane. The δ34S values range from -3.9 ± 0.5‰ to 23.2 ± 0.5‰ (VCDT), indicative of a strong exhaustion of sulfates in a local sulfate pool. We proposed that Fe-rich carbonate chimneys formed at the bottom of the sulfate-methane transition zone, beneath which Fe-driven AOM may happen and provide available ferrous for the extensive precipitation of pyrite in carbonate chimneys. The accumulation of reductive Fe in sediments via this process may widely occur in other analogous settings, with important application for Fe and S biogeochemical cycling within deep sediments at continental margins.

  11. Measurements of total OH reactivity during PROPHET-AMOS 2016

    NASA Astrophysics Data System (ADS)

    Rickly, P.; Sakowski, J.; Bottorff, B.; Lew, M.; Stevens, P. S.; Sklaveniti, S.; Locoge, N.; Dusanter, S.

    2017-12-01

    As one of the main oxidant in the atmosphere, the hydroxyl radical (OH) initiates the oxidation of volatile organic compounds that can lead to the formation of ozone and secondary organic aerosols. Understanding both the sources and sinks of OH is therefore important to address issues related to air quality and climate change. Measurements of total OH reactivity can provide an important test of our understanding of the OH radical budget. Recent measurements of total reactivity in many environments have been greater than calculated based on the measured concentration of VOCs, suggesting that important OH sinks in these environments are not well characterized. Measurements of total OH reactivity were performed in a forested environment during the PROPHET - AMOS field campaign (Program for Research on Oxidants: PHotochemisty, Emissions, and Transport - Atmospheric Measurements of Oxidants in Summer) using the Comparative Reactivity Method (CRM) and the Total OH Loss Rate Method (TOHLM). The site is characterized by large emissions of isoprene and monoterpenes and low anthropogenic influence. Measurements of total OH reactivity using these two techniques agree to within their respective uncertainties, giving confidence in the measured OH reactivity. In addition, measurements of trace gases (VOCs, NOx, O3) were used to perform a comprehensive apportionment of OH sinks. These measurements are used in a chemical model using the Master Chemical Mechanism to calculate the expected OH reactivity. The results will be compared to previous measurements of total OH reactivity at this site.

  12. Abundance and activity of 16S rRNA, amoA and nifH bacterial genes during assisted phytostabilization of mine tailings

    PubMed Central

    Nelson, Karis N.; Neilson, Julia W.; Root, Robert A.; Chorover, Jon; Maier, Raina M.

    2014-01-01

    Mine tailings in semiarid regions are highly susceptible to erosion and are sources of dust pollution and potential avenues of human exposure to toxic metals. One constraint to revegetation of tailings by phytostabilization is the absence of microbial communities critical for biogeochemical cycling of plant nutrients. The objective of this study was to evaluate specific genes as in situ indicators of biological soil response during phytoremediation. The abundance and activity of 16S rRNA, nifH, and amoA were monitored during a nine month phytostabilization study using buffalo grass and quailbush grown in compost-amended, metalliferous tailings. The compost amendment provided a greater than 5-log increase in bacterial abundance, and survival of this compost-inoculum was more stable in planted treatments. Despite increased abundance, the activity of the introduced community was low, and significant increases were not detected until six and nine months in quailbush, and unplanted compost and buffalo grass treatments, respectively. In addition, increased abundances of nitrogen-fixation (nifH) and ammonia-oxidizing (amoA) genes were observed in rhizospheres of buffalo grass and quailbush, respectively. Thus, plant establishment facilitated the short term stabilization of introduced bacterial biomass and supported the growth of two key nitrogen-cycling populations in compost-amended tailings. PMID:25495940

  13. Abundance and Activity of 16S rRNA, AmoA and NifH Bacterial Genes During Assisted Phytostabilization of Mine Tailings.

    PubMed

    Nelson, Karis N; Neilson, Julia W; Root, Robert A; Chorover, Jon; Maier, Raina M

    2015-01-01

    Mine tailings in semiarid regions are highly susceptible to erosion and are sources of dust pollution and potential avenues of human exposure to toxic metals. One constraint to revegetation of tailings by phytostabilization is the absence of microbial communities critical for biogeochemical cycling of plant nutrients. The objective of this study was to evaluate specific genes as in situ indicators of biological soil response during phytoremediation. The abundance and activity of 16S rRNA, nifH, and amoA were monitored during a nine month phytostabilization study using buffalo grass and quailbush grown in compost-amended, metalliferous tailings. The compost amendment provided a greater than 5-log increase in bacterial abundance, and survival of this compost-inoculum was more stable in planted treatments. Despite increased abundance, the activity of the introduced community was low, and significant increases were not detected until six and nine months in quailbush, and unplanted compost and buffalo grass treatments, respectively. In addition, increased abundances of nitrogen-fixation (nifH) and ammonia-oxidizing (amoA) genes were observed in rhizospheres of buffalo grass and quailbush, respectively. Thus, plant establishment facilitated the short term stabilization of introduced bacterial biomass and supported the growth of two key nitrogen-cycling populations in compost-amended tailings.

  14. amoA Gene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom

    PubMed Central

    Li, Jialin; Nedwell, David B.; Beddow, Jessica; Dumbrell, Alex J.; McKew, Boyd A.; Thorpe, Emma L.

    2014-01-01

    Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw]−1 day−1 in June, increasing to 37.4 μmol N gdw−1 day−1 in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw−1 day−1 in June, increasing to 11.7 μmol N gdw−1 day−1 in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. PMID:25326303

  15. amoA Gene abundances and nitrification potential rates suggest that benthic ammonia-oxidizing bacteria and not Archaea dominate N cycling in the Colne Estuary, United Kingdom.

    PubMed

    Li, Jialin; Nedwell, David B; Beddow, Jessica; Dumbrell, Alex J; McKew, Boyd A; Thorpe, Emma L; Whitby, Corinne

    2015-01-01

    Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw](-1) day(-1) in June, increasing to 37.4 μmol N gdw(-1) day(-1) in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw(-1) day(-1) in June, increasing to 11.7 μmol N gdw(-1) day(-1) in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  16. Photoluminescence and cathodoluminescence properties of Eu{sup 3+} ions activated AMoO{sub 4} (A = Mg, Ca, Sr, Ba) phosphors

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Du, Peng; Yu, Jae Su, E-mail: jsyu@khu.ac.kr

    2015-10-15

    Highlights: • Under 393 nm excitation, strong red emission located at 615 nm was observed in all the samples. • The Eu{sup 3+}-activated CaMoO{sub 4} phosphor exhibited the strongest PL properties. • The CIE chromaticity coordinate of Eu{sup 3+}-activated CaMoO{sub 4} phosphor was (0.647,0.352). • The color purity of Eu{sup 3+}-activated CaMoO{sub 4} phosphor was 92.8%. • Strong CL properties were observed in the Eu{sup 3+}-activated CaMoO{sub 4} phosphor. - Abstract: Eu{sup 3+}-activated AMoO{sub 4} (A = Mg, Ca, Sr, Ba) phosphors were synthesized by a solid-state reaction method. Photoluminescence and cathodoluminescence (CL) spectra as well as X-ray diffraction patternsmore » were measured to characterize the fabricated samples. Under 393 nm excitation, strong red emissions located at ∼615 nm corresponding to the {sup 5}D{sub 0} → {sup 7}F{sub 2} transition of Eu{sup 3+} ions were observed in all the samples. Compared with other Eu{sup 3+} ions activated AMoO{sub 4} (A = Mg, Sr, Ba) phosphors, Eu{sup 3+}-activated CaMoO{sub 4} phosphor exhibited the strongest red emission intensity with better Commission Internationale de L’Eclairage chromaticity coordinate and higher color purity. Furthermore, the CL results indicated that the Eu{sup 3+}-activated CaMoO{sub 4} phosphor had excellent luminescence properties.« less

  17. Experimental AMO physics in undergraduate optics and lasers courses

    NASA Astrophysics Data System (ADS)

    Hoyt, Chad

    2017-04-01

    This talk will describe experimental AMO research projects in undergraduate Lasers and Optics courses at Bethel University. The courses, which include a comprehensive lecture portion, are built on open-ended projects that have a novel aspect. Classes begin with four weeks of small student groups rotating between several standard laser and optics laboratory exercises. These may include, for example, alignment and characterization of a helium neon laser and measurements with a Michelson interferometer or a scanning Fabry-Pérot optical cavity. During the following seven weeks of the course, student groups (2-4 people) choose and pursue research questions in the lab. Their work culminates in a group manuscript and a twenty-minute presentation to the class. Projects in the spring, 2016 Optics course included experiments with ultracold lithium atoms in a magneto-optical trap, a prototype, portable, mode-locked erbium fiber laser, a home-built fiber laser frequency comb, double-slit imaging with single photons, and digital holographic tweezers (led by Nathan Lindquist). Projects in the spring, 2015 Lasers course included ultrafast optics with a mode-locked erbium fiber laser, quantum optics, surface plasmon lasers (led by Nathan Lindquist) and a low-cost, near-infrared spectrometer. Several of these projects are related to larger scale, funded research in the physics department. The format and experience in Lasers and Optics is representative of other upper-level courses at Bethel, including Fluid Mechanics and Computer Methods. A physics education research group from the University of Colorado evaluated the spring, 2015 Lasers and 2016 Optics courses. They focused on student experimental attitudes and measurements of student project ownership.

  18. Novel therapy for pyridoxine dependent epilepsy due to ALDH7A1 genetic defect: L-arginine supplementation alternative to lysine-restricted diet.

    PubMed

    Mercimek-Mahmutoglu, Saadet; Cordeiro, Dawn; Cruz, Vivian; Hyland, Keith; Struys, Eduard A; Kyriakopoulou, Lianna; Mamak, Eva

    2014-11-01

    Pyridoxine dependent epilepsy (PDE) due to mutations in the ALDH7A1 gene (PDE-ALDH7A1) is caused by α-aminoadipic-semialdehyde-dehydrogenase enzyme deficiency in the lysine pathway resulting in the accumulation of α-aminoadipic acid semialdehyde (α-AASA). Classical presentation is neonatal intractable seizures with a dramatic response to pyridoxine. Pyridoxine therapy does not prevent developmental delays in the majority of the patients. We hypothesized that L-arginine supplementation will decrease accumulation of α-AASA by competitive inhibition of lysine transport into the central nervous system and improve neurodevelopmental and neurocognitive functions in PDE-ALDH7A1. A 12-year-old male with PDE-ALDH7A1 was treated with l-arginine supplementation as an innovative therapy. Treatment outcome was monitored by cerebral-spinal-fluid (CSF) α-AASA measurements at baseline, 6th and 12th months of therapy. Neuropsychological assessments were performed at baseline and 12th months of therapy. L-arginine therapy was well tolerated without side effects. CSF α-AASA was decreased 57% at 12th months of therapy. Neuropsychological assessments revealed improvements in general abilities index from 108 to 116 and improvements in verbal and motor functioning at 12th months of therapy. The short-term treatment outcome of this novel L-arginine supplementation therapy for PDE-ALDH7A1 was successful for biochemical and neurocognitive improvements. Copyright © 2014 European Paediatric Neurology Society. Published by Elsevier Ltd. All rights reserved.

  19. Revisiting Caveiro Lake sediment record: the Holocene NAO and AMO impact on Pico Island (Azores archipelago)

    NASA Astrophysics Data System (ADS)

    Hernandez, A.; Giralt, S.; Raposeiro, P. M.; Gonçalves, V. M.; Pueyo, J. J.; Trigo, R. M.; Bao, R.; Sáez, A.

    2017-12-01

    Northern Hemisphere climate is partly conditioned by a number of atmospheric and oceanic patterns which occur in the North Atlantic sector. The favourable location of the Azores Archipelago (37°-40° N, 25°-31° W) results in a privileged place to generate high-resolution Holocene climatic proxy data that can contribute to deep our understanding on the evolution of these atmospheric and oceanic patterns. In the frame of three research projects, namely PALEONAO (CGL2010-15767), RAPIDNAO (CGL2013-40608-R) and PALEOMODES (CGL2016-75281-C2), high-resolution proxy-based reconstructions from Azores Archipelago have recently shown a combined impact of atmospheric and oceanic patterns at multiannual and decadal time-scales (Rubio-Inglés et al. 2016; Hernández et al. 2017). However, the long-term evolution coupling/uncoupling of these patterns is not well-determined yet. Here, we present a new high-resolution climate reconstruction based on the Caveiro Lake sedimentary sequence in order to fill this gap. Previously, Björck et al. (2006) studied a section of this sequence (the uppermost 4.6 m covering last 6 Ka cal BP) concluding that changes in the thermohaline circulation and the SST were the main drivers in the long-term precipitation variability, whereas the NAO impact was the main atmospheric driver of short-term precipitation changes. However, they only distinguished the NAO impact for the last 600 years owing to the low resolution of the study for the lower portion of the core. The new studied sequence (8.40 m long, 8.2 Ka cal BP) has been analysed at decadal-to centennial time-scale resolution for X-ray diffraction (XRD), X-ray fluorescence (XRF) core scanning and elemental and isotope geochemistry on bulk organic matter. The statistical multivariate analysis of the data highlights the main drivers triggering the sedimentary infill of the lake would be the NAO and AMO by controlling the lacustrine productivity via nutrients input. This new high

  20. Calculation of spherical harmonics and Wigner d functions by FFT. Applications to fast rotational matching in molecular replacement and implementation into AMoRe.

    PubMed

    Trapani, Stefano; Navaza, Jorge

    2006-07-01

    The FFT calculation of spherical harmonics, Wigner D matrices and rotation function has been extended to all angular variables in the AMoRe molecular replacement software. The resulting code avoids singularity issues arising from recursive formulas, performs faster and produces results with at least the same accuracy as the original code. The new code aims at permitting accurate and more rapid computations at high angular resolution of the rotation function of large particles. Test calculations on the icosahedral IBDV VP2 subviral particle showed that the new code performs on the average 1.5 times faster than the original code.

  1. Determination of Mo- and Ca-isotope ratios in Ca100MoO4 crystal for AMoRE-I experiment

    NASA Astrophysics Data System (ADS)

    Karki, S.; Aryal, P.; Kim, H. J.; Kim, Y. D.; Park, H. K.

    2018-01-01

    The first phase of the AMoRE (Advanced Mo-based Rare process Experiment) is to search for neutrinoless double-beta decay of 100Mo with calcium molybdate (Ca100MoO4) crystals enriched in 100Mo and depleted in 48Ca using a cryogenic technique at Yangyang underground laboratory in Korea. It is important to know 100Mo- and 48Ca-isotope ratios in Ca100MoO4 crystal to estimate half-life of 100Mo decays and to 2 νββ background from 48Ca. We employed the ICP-MS (Inductive Coupled Plasma Mass Spectrometer) to measure 100Mo- and 48Ca-isotope ratios in Ca100MoO4 crystal. The measured results for 100Mo- and 48Ca-isotope ratios in the crystal are (94 . 6 ± 2 . 8) % and (0 . 00211 ± 0 . 00006) %, respectively, where errors are included both statistical and systematic uncertainties.

  2. AMO EXPRESS: A Command and Control Experiment for Crew Autonomy

    NASA Technical Reports Server (NTRS)

    Stetson, Howard K.; Frank, Jeremy; Cornelius, Randy; Haddock, Angie; Wang, Lui; Garner, Larry

    2015-01-01

    NASA is investigating a range of future human spaceflight missions, including both Mars-distance and Near Earth Object (NEO) targets. Of significant importance for these missions is the balance between crew autonomy and vehicle automation. As distance from Earth results in increasing communication delays, future crews need both the capability and authority to independently make decisions. However, small crews cannot take on all functions performed by ground today, and so vehicles must be more automated to reduce the crew workload for such missions. NASA's Advanced Exploration Systems Program funded Autonomous Mission Operations (AMO) project conducted an autonomous command and control demonstration of intelligent procedures to automatically initialize a rack onboard the International Space Station (ISS) with power and thermal interfaces, and involving core and payload command and telemetry processing, without support from ground controllers. This autonomous operations capability is enabling in scenarios such as a crew medical emergency, and representative of other spacecraft autonomy challenges. The experiment was conducted using the Expedite the Processing of Experiments for Space Station (EXPRESS) rack 7, which was located in the Port 2 location within the U.S Laboratory onboard the International Space Station (ISS). Activation and deactivation of this facility is time consuming and operationally intensive, requiring coordination of three flight control positions, 47 nominal steps, 57 commands, 276 telemetry checks, and coordination of multiple ISS systems (both core and payload). The autonomous operations concept includes a reduction of the amount of data a crew operator is required to verify during activation or de-activation, as well as integration of procedure execution status and relevant data in a single integrated display. During execution, the auto-procedures provide a step-by-step messaging paradigm and a high level status upon termination. This

  3. OH, HO2, and HO2* Radical Chemistry During PROPHET-AMOS 2016: Measurements and Model Comparison

    NASA Astrophysics Data System (ADS)

    Bottorff, B.; Lew, M.; Rickly, P.; Stevens, P. S.

    2017-12-01

    The hydroxyl (OH) and peroxy radicals, both the hydroperoxy radical (HO2) and organic peroxy radicals (RO2), play an important role in atmospheric chemistry. In addition to controlling lifetimes of many trace gases important to issues of global climate change, reactions of these radicals can also lead to the production of ozone and secondary organic aerosols in the atmosphere. Previous measurements of these radicals in remote forest environments have shown serious discrepancies with modeled concentrations. These results bring into question our understanding of the atmospheric chemistry of isoprene and other biogenic VOCs under low NOX conditions. In the summer of 2016, OH, HO2 and HO2* (HO2 + αRO2) radicals were measured using the Indiana University Laser-Induced Fluorescence Fluorescence Assay by Gas Expansion (LIF-FAGE) technique as part of the Program for Research on Oxidants: PHtochemistry, Emissions, and Transport- Atmospheric Measurements of Oxidants in Summer (PROPHET-AMOS). This campaign took place in a forested area in northern Michigan characterized by high mixing ratios of isoprene and low mixing ratios of NOX. Ambient measurements from this campaign will be compared to previous measurements at this site and to modeled predictions using both the Regional Atmospheric Chemistry Mechanism (RACM2) and the Master Chemical Mechanism. Potential interferences associated with the OH measurements will also be examined.

  4. Seeking the Essential Superintendent.

    ERIC Educational Resources Information Center

    Hawley, Willis D.

    1994-01-01

    Although typical school administration program deserves criticism, it would be impossible for a university-based preparation program to cover all topics identified in AASA's "Professional Standards for Superintendents." Universities understandably stress theory and cannot substitute for rich professional development program in school…

  5. AMO EXPRESS: A Command and Control Experiment for Crew Autonomy Onboard the International Space Station

    NASA Technical Reports Server (NTRS)

    Stetson, Howard K.; Haddock, Angie T.; Frank, Jeremy; Cornelius, Randy; Wang, Lui; Garner, Larry

    2015-01-01

    NASA is investigating a range of future human spaceflight missions, including both Mars-distance and Near Earth Object (NEO) targets. Of significant importance for these missions is the balance between crew autonomy and vehicle automation. As distance from Earth results in increasing communication delays, future crews need both the capability and authority to independently make decisions. However, small crews cannot take on all functions performed by ground today, and so vehicles must be more automated to reduce the crew workload for such missions. NASA's Advanced Exploration Systems Program funded Autonomous Mission Operations (AMO) project conducted an autonomous command and control experiment on-board the International Space Station that demonstrated single action intelligent procedures for crew command and control. The target problem was to enable crew initialization of a facility class rack with power and thermal interfaces, and involving core and payload command and telemetry processing, without support from ground controllers. This autonomous operations capability is enabling in scenarios such as initialization of a medical facility to respond to a crew medical emergency, and representative of other spacecraft autonomy challenges. The experiment was conducted using the Expedite the Processing of Experiments for Space Station (EXPRESS) rack 7, which was located in the Port 2 location within the U.S Laboratory onboard the International Space Station (ISS). Activation and deactivation of this facility is time consuming and operationally intensive, requiring coordination of three flight control positions, 47 nominal steps, 57 commands, 276 telemetry checks, and coordination of multiple ISS systems (both core and payload). Utilization of Draper Laboratory's Timeliner software, deployed on-board the ISS within the Command and Control (C&C) computers and the Payload computers, allowed development of the automated procedures specific to ISS without having to certify

  6. Front-Line Advocacy: Advocacy Based on Effective Relationships

    ERIC Educational Resources Information Center

    Gooden, Benny L.

    2012-01-01

    When American Association of School Administrators (AASA) and other membership organizations try to engage individuals in advocacy, a frequent exhortation is "Contact your representatives in Congress." Professional membership groups also stress that written communication is more powerful than phone calls to a representative's office, and they…

  7. Assessing the order of magnitude of outcomes in single-arm cohorts through systematic comparison with corresponding cohorts: An example from the AMOS study

    PubMed Central

    Hamre, Harald J; Glockmann, Anja; Tröger, Wilfried; Kienle, Gunver S; Kiene, Helmut

    2008-01-01

    Background When a therapy has been evaluated in the first clinical study, the outcome is often compared descriptively to outcomes in corresponding cohorts receiving other treatments. Such comparisons are often limited to selected studies, and often mix different outcomes and follow-up periods. Here we give an example of a systematic comparison to all cohorts with identical outcomes and follow-up periods. Methods The therapy to be compared (anthroposophic medicine, a complementary therapy system) had been evaluated in one single-arm cohort study: the Anthroposophic Medicine Outcomes Study (AMOS). The five largest AMOS diagnosis groups (A-cohorts: asthma, depression, low back pain, migraine, neck pain) were compared to all retrievable corresponding cohorts (C-cohorts) receiving other therapies with identical outcomes (SF-36 scales or summary measures) and identical follow-up periods (3, 6 or 12 months). Between-group differences (pre-post difference in an A-cohort minus pre-post difference in the respective C-cohort) were divided with the standard deviation (SD) of the baseline score of the A-cohort. Results A-cohorts (5 cohorts with 392 patients) were similar to C-cohorts (84 cohorts with 16,167 patients) regarding age, disease duration, baseline affection and follow-up rates. A-cohorts had ≥ 0.50 SD larger improvements than C-cohorts in 13.5% (70/517) of comparisons; improvements of the same order of magnitude (small or minimal differences: -0.49 to 0.49 SD) were found in 80.1% of comparisons; and C-cohorts had ≥ 0.50 SD larger improvements than A-cohorts in 6.4% of comparisons. Analyses stratified by diagnosis had similar results. Sensitivity analyses, restricting the comparisons to C-cohorts with similar study design (observational studies), setting (primary care) or interventions (drugs, physical therapies, mixed), or restricting comparisons to SF-36 scales with small baseline differences between A- and C-cohorts (-0.49 to 0.49 SD) also had similar results

  8. 2015 JOSPT Awards: Back Pain and Anterior Cruciate Ligament Injuries Are a Continued Focus of Research and Clinical Attention in Physical Therapy.

    PubMed

    Simoneau, Guy G

    2016-04-01

    During the American Physical Therapy Association's Combined Sections Meeting in Anaheim, California in February 2016, JOSPT recognized the authors of the most outstanding research and clinical practice manuscripts published in JOSPT during the 2015 calendar year. The 2015 JOSPT Excellence in Research Award was presented to Björn Aasa, Lars Berglund, Peter Michaelson, and Ulrika Aasa for their paper titled "Individualized Low-Load Motor Control Exercises and Education Versus a High-Load Lifting Exercise and Education to Improve Activity, Pain Intensity, and Physical Performance in Patients With Low Back Pain: A Randomized Controlled Trial." The 2015 George J. Davies-James A. Gould Excellence in Clinical Inquiry Award was presented to Anne Benjaminse, Alli Gokeler, Bert Otten, Ariel V. Dowling, Avery Faigenbaum, Kevin R. Ford, Timothy E. Hewett, James A. Onate, and Gregory D. Myer for their work titled "Optimization of the Anterior Cruciate Ligament Injury Prevention Paradigm: Novel Feedback Techniques to Enhance Motor Learning and Reduce Injury Risk."

  9. Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf. corticata by 16S rRNA, aprA, and amoA gene analysis.

    PubMed

    Meyer, Birte; Kuever, Jan

    2008-08-01

    Denaturing gradient gel electrophoresis (DGGE)-based analyses of 16S rRNA, aprA, and amoA genes demonstrated that a phylogenetically diverse and complex microbial community was associated with the Caribbean deep-water sponge Polymastia cf. corticata Ridley and Dendy, 1887. From the 38 archaeal and bacterial 16S rRNA phylotypes identified, 53% branched into the sponge-specific, monophyletic sequence clusters determined by previous studies (considering predominantly shallow-water sponge species), whereas 26% appeared to be P. cf. corticata specifically associated microorganisms ("specialists"); 21% of the phylotypes were confirmed to represent seawater- and sediment-derived proteobacterial species ("contaminants") acquired by filtration processes from the host environment. Consistently, the aprA and amoA gene-based analyses indicated the presence of environmentally derived sulfur- and ammonia-oxidizers besides putative sponge-specific sulfur-oxidizing Gammaproteobacteria and Alphaproteobacteria and a sulfate-reducing archaeon. A sponge-specific, endosymbiotic sulfur cycle as described for marine oligochaetes is proposed to be also present in P. cf. corticata. Overall, the results of this work support the recent studies that demonstrated the sponge species specificity of the associated microbial community while the biogeography of the host collection site has only a minor influence on the composition. In P. cf. corticata, the specificity of the sponge-microbe associations is even extended to the spatial distribution of the microorganisms within the sponge body; distinct bacterial populations were associated with the different tissue sections, papillae, outer and inner cortex, and choanosome. The local distribution of a phylotype within P. cf. corticata correlated with its (1) phylogenetic affiliation, (2) classification as sponge-specific or nonspecifically associated microorganism, and (3) potential ecological role in the host sponge.

  10. Women Superintendents in Iowa: Where Is the Momentum? Reflections of a National Malaise

    ERIC Educational Resources Information Center

    Olsen, Jill

    2007-01-01

    The United States Census Bureau characterized the position of school superintendent as being the most male-dominated executive position of any profession in the United States (Glass, Bjork, & Brunner, 2001). Paul Houston, president of the American Association of School Administrators (AASA) has stated that the future of school system…

  11. The Quality Fit.

    ERIC Educational Resources Information Center

    Vertiz, Virginia C.; Downey, Carolyn J.

    This paper proposes a two-pronged approach for examining an educational program's "quality of fit." The American Association of School Administrators' (AASA's) Curriculum Management Audit for quality indicators is reviewed, using the Downey Quality Fit Framework and Deming's 4 areas of profound knowledge and 14 points. The purpose is to…

  12. New School Designs, New Rural Center, Old Parochial-Aid Problems

    ERIC Educational Resources Information Center

    Hill, Frederick W.

    1970-01-01

    Describes some of the new school building innovations presented at a recent AASA exhibit; the work of the Rexmere Center in New York for the enrichment of rural youngsters and gives arguments pro and con for State financial support of non- public schools in a recent New York Regents endorsement. (KJ)

  13. Nancy Kassebaum: Education's New Voice.

    ERIC Educational Resources Information Center

    Penning, Nick

    1989-01-01

    U.S. Senator Nancy Kassebaum has become the leading Republican advocate for education. She shares AASA's support for the Head Start program, but is skeptical about financing a federal day care program. She also supports latchkey, intergenerational, and vocational/technical programs, and favors community volunteering over a national youth service…

  14. Leading Change through Cultural Competence

    ERIC Educational Resources Information Center

    Gregory, Richard A.

    2009-01-01

    Peter Senge's message during the 2005 American Association of School Administrators (AASA) conference reminded people that they live not only in a school system, but also within a highly diverse, global community. Their individual and organizational policies, practices, and behaviors, can and do impact the learning experience for those they…

  15. Job Satisfaction of Female and Male Superintendents: The Influence of Job Facets and Contextual Variables as Potential Predictors

    ERIC Educational Resources Information Center

    Young, I. Phillip; Kowalski, Theodore J.; McCord, Robert S.; Petersen, George J.

    2012-01-01

    A descriptive multiple regression approach was used to assess the job satisfaction of female and male public school superintendents taking part in a decennial survey conducted by AASA. Self-reported job satisfaction of public school superintendents was regressed on their affective reactions to specific job facets (supervision, co-workers, and…

  16. DynAMo: A Modular Platform for Monitoring Process, Outcome, and Algorithm-Based Treatment Planning in Psychotherapy.

    PubMed

    Kaiser, Tim; Laireiter, Anton Rupert

    2017-07-20

    In recent years, the assessment of mental disorders has become more and more personalized. Modern advancements such as Internet-enabled mobile phones and increased computing capacity make it possible to tap sources of information that have long been unavailable to mental health practitioners. Software packages that combine algorithm-based treatment planning, process monitoring, and outcome monitoring are scarce. The objective of this study was to assess whether the DynAMo Web application can fill this gap by providing a software solution that can be used by both researchers to conduct state-of-the-art psychotherapy process research and clinicians to plan treatments and monitor psychotherapeutic processes. In this paper, we report on the current state of a Web application that can be used for assessing the temporal structure of mental disorders using information on their temporal and synchronous associations. A treatment planning algorithm automatically interprets the data and delivers priority scores of symptoms to practitioners. The application is also capable of monitoring psychotherapeutic processes during therapy and of monitoring treatment outcomes. This application was developed using the R programming language (R Core Team, Vienna) and the Shiny Web application framework (RStudio, Inc, Boston). It is made entirely from open-source software packages and thus is easily extensible. The capabilities of the proposed application are demonstrated. Case illustrations are provided to exemplify its usefulness in clinical practice. With the broad availability of Internet-enabled mobile phones and similar devices, collecting data on psychopathology and psychotherapeutic processes has become easier than ever. The proposed application is a valuable tool for capturing, processing, and visualizing these data. The combination of dynamic assessment and process- and outcome monitoring has the potential to improve the efficacy and effectiveness of psychotherapy. ©Tim Kaiser

  17. DynAMo: A Modular Platform for Monitoring Process, Outcome, and Algorithm-Based Treatment Planning in Psychotherapy

    PubMed Central

    Laireiter, Anton Rupert

    2017-01-01

    Background In recent years, the assessment of mental disorders has become more and more personalized. Modern advancements such as Internet-enabled mobile phones and increased computing capacity make it possible to tap sources of information that have long been unavailable to mental health practitioners. Objective Software packages that combine algorithm-based treatment planning, process monitoring, and outcome monitoring are scarce. The objective of this study was to assess whether the DynAMo Web application can fill this gap by providing a software solution that can be used by both researchers to conduct state-of-the-art psychotherapy process research and clinicians to plan treatments and monitor psychotherapeutic processes. Methods In this paper, we report on the current state of a Web application that can be used for assessing the temporal structure of mental disorders using information on their temporal and synchronous associations. A treatment planning algorithm automatically interprets the data and delivers priority scores of symptoms to practitioners. The application is also capable of monitoring psychotherapeutic processes during therapy and of monitoring treatment outcomes. This application was developed using the R programming language (R Core Team, Vienna) and the Shiny Web application framework (RStudio, Inc, Boston). It is made entirely from open-source software packages and thus is easily extensible. Results The capabilities of the proposed application are demonstrated. Case illustrations are provided to exemplify its usefulness in clinical practice. Conclusions With the broad availability of Internet-enabled mobile phones and similar devices, collecting data on psychopathology and psychotherapeutic processes has become easier than ever. The proposed application is a valuable tool for capturing, processing, and visualizing these data. The combination of dynamic assessment and process- and outcome monitoring has the potential to improve the efficacy

  18. Leadership for Change. National Superintendent of the Year Forum, 2006

    ERIC Educational Resources Information Center

    American Association of School Administrators, 2006

    2006-01-01

    In its second year, the American Association of School Administrators (AASA) invited 2006 state superintendents of the year to gather in Denver, Colorado, for a rare opportunity to spend three intensive days talking and learning with their colleagues about leadership's impact on student achievement, public schools and the global economy, and about…

  19. Articles of Faith & Hope for Public Education.

    ERIC Educational Resources Information Center

    Houston, Paul D.

    America's common schools are at a crossroads. This collection of speeches, articles and columns, written by the executive director of the American Association of School Administrators (AASA), between 1994-1997, addresses many of the issues today. The overriding theme is the need to preserve common schools, which are presented as the key instrument…

  20. Exploring the Possibility and Potential for Pay for Performance in America's Public Schools

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.

    2009-01-01

    In response to a growing dialogue at the local, state and national levels around the idea of restructuring teacher pay to include performance measures, the American Association of School Administrators surveyed a randomly selected sample of its members to gauge their feedback and interest in pay-for-performance programs. AASA launched this survey…

  1. Family First Considerations

    ERIC Educational Resources Information Center

    LaFee, Scott

    2012-01-01

    The typical superintendent these days is male (though the percentage of female superintendents is steadily rising, now accounting for one in four, according to AASA's 2010 decennial study of the superintendency), in his 40s and almost always married with children. When educators become superintendents, the issues of family dynamics and related…

  2. AMO EXPRESS: A Command and Control Experiment for Crew Autonomy Onboard the International Space Station

    NASA Technical Reports Server (NTRS)

    Stetson, Howard K.; Frank, Jeremy; Cornelius, Randy; Haddock, Angie; Wang, Lui; Garner, Larry

    2015-01-01

    NASA is investigating a range of future human spaceflight missions, including both Mars-distance and Near Earth Object (NEO) targets. Of significant importance for these missions is the balance between crew autonomy and vehicle automation. As distance from Earth results in increasing communication delays, future crews need both the capability and authority to independently make decisions. However, small crews cannot take on all functions performed by ground today, and so vehicles must be more automated to reduce the crew workload for such missions. NASA's Advanced Exploration Systems Program funded Autonomous Mission Operations (AMO) project conducted an autonomous command and control experiment on-board the International Space Station that demonstrated single action intelligent procedures for crew command and control. The target problem was to enable crew initialization of a facility class rack with power and thermal interfaces, and involving core and payload command and telemetry processing, without support from ground controllers. This autonomous operations capability is enabling in scenarios such as initialization of a medical facility to respond to a crew medical emergency, and representative of other spacecraft autonomy challenges. The experiment was conducted using the Expedite the Processing of Experiments for Space Station (EXPRESS) rack 7, which was located in the Port 2 location within the U.S Laboratory onboard the International Space Station (ISS). Activation and deactivation of this facility is time consuming and operationally intensive, requiring coordination of three flight control positions, 47 nominal steps, 57 commands, 276 telemetry checks, and coordination of multiple ISS systems (both core and payload). Utilization of Draper Laboratory's Timeliner software, deployed on-board the ISS within the Command and Control (C&C) computers and the Payload computers, allowed development of the automated procedures specific to ISS without having to certify

  3. Unconformity-related oil entrapment in Muddy Sandstone: comparison of Kitty and Amos Draw fields, Powder River basin, Wyoming

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Odland, S.K.; Gardner, M.H.; Gustason, E.R.

    1986-08-01

    It has long been known that an unconformity plays a critical role in trapping oil in the Muddy Sandstone in the Powder River basin, but opinions have varied as to exactly where in the section that unconformity is located. Their work indicates that there are, in fact, two unconformities associated with the Muddy in the northern part of the basin. The older of these occurs on top of the Skull Creek Shale, whereas the younger is largely intraformational. In places, the younger unconformity has truncated the older one. It is the younger unconformity that is responsible for creating favorable settingsmore » for stratigraphic entrapment of oil. Two types of unconformity-related oil traps result from fluvial downcutting into and through the strand-plain sandstones of the oldest member of the Muddy during a major sea level drop. In cases where the unconformity cuts through the Muddy into the underlying Skull Creek Shale, permeable valley-fill sediments, deposited during the Muddy transgression, are juxtaposed against the impermeable Skull Creek Shale along the valley walls. Where valleys are oriented roughly perpendicular to regional structure, as at Kitty field, the updip portion of the valley wall can form a permeability barrier to the fluvial reservoir sandstones of the adjacent valley fill. In cases where the unconformity is intraformational, such as at Amos Draw field, early diagenetic clay, associated with the weathered horizon directly beneath the unconformity, can create a seal on top of the strand-plain sandstones of the oldest member of the Muddy.« less

  4. Characterization of the first knock-out aldh7a1 zebrafish model for pyridoxine-dependent epilepsy using CRISPR-Cas9 technology

    PubMed Central

    Zabinyakov, Nikita; Bullivant, Garrett; Cao, Feng; Fernandez Ojeda, Matilde; Jia, Zheng Ping; Wen, Xiao-Yan; Dowling, James J.; Salomons, Gajja S.

    2017-01-01

    Pyridoxine dependent epilepsy (PDE) is caused by likely pathogenic variants in ALDH7A1 (PDE-ALDH7A1) and inherited autosomal recessively. Neurotoxic alpha-amino adipic semialdehyde (alpha-AASA), piperideine 6-carboxylate and pipecolic acid accumulate in body fluids. Neonatal or infantile onset seizures refractory to anti-epileptic medications are clinical features. Treatment with pyridoxine, arginine and lysine-restricted diet does not normalize neurodevelopmental outcome or accumulation of neurotoxic metabolites. There is no animal model for high throughput drug screening. For this reason, we developed and characterized the first knock-out aldh7a1 zebrafish model using CRISPR-Cas9 technology. Zebrafish aldh7a1 mutants were generated by using a vector free method of CRISPR-Cas9 mutagenesis. Genotype analysis of aldh7a1 knock-out zebrafish was performed by high resolution melt analysis, direct sequencing and QIAxcel system. Electroencephalogram was performed. Alpha-AASA, piperideine 6-carboxylate and pipecolic acid, were measured by liquid chromatography-tandem mass spectrometry. Our knock-out aldh7a1 zebrafish has homozygous 5 base pair (bp) mutation in ALDH7A1. Knock-out aldh7a1 embryos have spontaneous rapid increase in locomotion and a rapid circling swim behavior earliest 8-day post fertilization (dpf). Electroencephalogram revealed large amplitude spike discharges compared to wild type. Knock-out aldh7a1 embryos have elevated alpha-AASA, piperideine 6-carboxylate and pipecolic acid compared to wild type embryos at 3 dpf. Knock-out aldh7a1 embryos showed no aldh7a1 protein by western blot compared to wild type. Our knock-out aldh7a1 zebrafish is a well characterized model for large-scale drug screening using behavioral and biochemical features and accurately recapitulates the human PDE-ALDH7A1 disease. PMID:29053735

  5. Characterization of the first knock-out aldh7a1 zebrafish model for pyridoxine-dependent epilepsy using CRISPR-Cas9 technology.

    PubMed

    Zabinyakov, Nikita; Bullivant, Garrett; Cao, Feng; Fernandez Ojeda, Matilde; Jia, Zheng Ping; Wen, Xiao-Yan; Dowling, James J; Salomons, Gajja S; Mercimek-Andrews, Saadet

    2017-01-01

    Pyridoxine dependent epilepsy (PDE) is caused by likely pathogenic variants in ALDH7A1 (PDE-ALDH7A1) and inherited autosomal recessively. Neurotoxic alpha-amino adipic semialdehyde (alpha-AASA), piperideine 6-carboxylate and pipecolic acid accumulate in body fluids. Neonatal or infantile onset seizures refractory to anti-epileptic medications are clinical features. Treatment with pyridoxine, arginine and lysine-restricted diet does not normalize neurodevelopmental outcome or accumulation of neurotoxic metabolites. There is no animal model for high throughput drug screening. For this reason, we developed and characterized the first knock-out aldh7a1 zebrafish model using CRISPR-Cas9 technology. Zebrafish aldh7a1 mutants were generated by using a vector free method of CRISPR-Cas9 mutagenesis. Genotype analysis of aldh7a1 knock-out zebrafish was performed by high resolution melt analysis, direct sequencing and QIAxcel system. Electroencephalogram was performed. Alpha-AASA, piperideine 6-carboxylate and pipecolic acid, were measured by liquid chromatography-tandem mass spectrometry. Our knock-out aldh7a1 zebrafish has homozygous 5 base pair (bp) mutation in ALDH7A1. Knock-out aldh7a1 embryos have spontaneous rapid increase in locomotion and a rapid circling swim behavior earliest 8-day post fertilization (dpf). Electroencephalogram revealed large amplitude spike discharges compared to wild type. Knock-out aldh7a1 embryos have elevated alpha-AASA, piperideine 6-carboxylate and pipecolic acid compared to wild type embryos at 3 dpf. Knock-out aldh7a1 embryos showed no aldh7a1 protein by western blot compared to wild type. Our knock-out aldh7a1 zebrafish is a well characterized model for large-scale drug screening using behavioral and biochemical features and accurately recapitulates the human PDE-ALDH7A1 disease.

  6. Surviving a Thousand Cuts: America's Public Schools and the Recession. Report of Findings

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.

    2010-01-01

    This study is the tenth in a series of studies conducted by the American Association of School Administrators on the impact of the economic downturn on schools. AASA launched the series in fall 2008 in response to state budget shortfalls, federal buyouts and interventions, and a series of additional events characterizing a slowing, stagnant…

  7. 3-Dimensional Portrait of the Female CEO

    ERIC Educational Resources Information Center

    Lemasters, Linda; Roach, Virginia

    2012-01-01

    Dobie and Hummel (2001) asserted that the school superintendency is the most male-dominated position within the field of education. According to a 1992 study, 72% of educators were women; however, only 13.2% of superintendents are women (Glass, 1992). The most recent survey by the American Association of School Administrators (AASA) found that…

  8. A Cliff Hanger: How America's Public Schools Continue to Feel the Impact of the Economic Downturn. Report of Findings

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.

    2010-01-01

    This study is the seventh in a series of studies conducted by the American Association of School Administrators on the impact of the economic downturn on schools. AASA launched the series in fall 2008 in response to state budget shortfalls, federal buy-outs and interventions, and a series of additional events characterizing a slowing, stagnant…

  9. One Year Later: How the Economic Downturn Continues to Impact School Districts. Report of Findings

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.; McCord, Robert S.

    2009-01-01

    This study is the sixth in a series of studies conducted by the American Association of School Administrators on the impact of the economic downturn on schools. AASA launched the series in fall 2008 in response to state budget shortfalls, federal buy-outs and interventions, and a series of additional events characterizing a slowing, stagnant…

  10. Education Cuts Have Yet to Heal: How the Economic Recession Continues to Impact Our Nation's Schools. Report of Findings

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.

    2015-01-01

    This survey is the 16th in a series conducted by AASA, The School Superintendents Association, on the impact of the economic recession and related fiscal policies (like sequestration) on the nation's schools. The series was launched in 2008 in response to state budget shortfalls, federal aid and interventions, and a series of additional events…

  11. Looking Back, Looking Forward: How the Economic Downturn Continues to Impact School Districts. Report of Findings

    ERIC Educational Resources Information Center

    McCord, Robert S.; Ellerson, Noelle M.

    2009-01-01

    This study is the fourth in a series of studies conducted by the American Association of School Administrators on the impact of the economic downturn on schools. AASA launched the series in fall 2008 in response to state budget shortfalls, federal buy-outs and interventions, and a series of additional events characterizing a slowing, stagnant…

  12. Cut Deep: How the Sequester Will Impact Our Nation's Schools. Report of Findings

    ERIC Educational Resources Information Center

    Ellerson, Noelle M.

    2012-01-01

    This study, released in July 2012, is the thirteenth in a series of studies by the Amerian Association of School Administrators (AASA) looking at the impact of the economic recession on the nation's schools. Unlike earlier surveys in the series, though, this survey focused on one particular aspect of the recession: sequestration. This fiscal…

  13. Staff Dismissal: Problems & Solutions. AASA Critical Issues Report.

    ERIC Educational Resources Information Center

    Neill, Shirley Boes; Custis, Jerry

    This report, addressed to administrators and board members, discusses teacher dismissals in light of such motivating factors as declining enrollment, teacher supply and demand, and budget problems. Divided into nine chapters, this how-to-do-it book discusses some of the following topics: facts and figures on the dismissal of teachers, alternatives…

  14. The late Early Pleistocene human dental remains from Uadi Aalad and Mulhuli-Amo (Buia), Eritrean Danakil: macromorphology and microstructure.

    PubMed

    Zanolli, Clément; Bondioli, Luca; Coppa, Alfredo; Dean, Christopher M; Bayle, Priscilla; Candilio, Francesca; Capuani, Silvia; Dreossi, Diego; Fiore, Ivana; Frayer, David W; Libsekal, Yosief; Mancini, Lucia; Rook, Lorenzo; Medin Tekle, Tsegai; Tuniz, Claudio; Macchiarelli, Roberto

    2014-09-01

    Fieldwork performed during the last 15 years in various Early Pleistocene East African sites has significantly enlarged the fossil record of Homo erectus sensu lato (s.l.). Additional evidence comes from the Danakil Depression of Eritrea, where over 200 late Early to early Middle Pleistocene sites have been identified within a ∼1000 m-thick sedimentary succession outcropping in the Dandiero Rift Basin, near Buia. Along with an adult cranium (UA 31), which displays a blend of H. erectus-like and derived morpho-architectural features and three pelvic remains, two isolated permanent incisors (UA 222 and UA 369) have also been recovered from the 1 Ma (millions of years ago) Homo-bearing outcrop of Uadi Aalad. Since 2010, our surveys have expanded to the nearby (4.7 km) site of Mulhuli-Amo (MA). This is a fossiliferous area that has been preliminarily surveyed because of its exceptional concentration of Acheulean stone tools. So far, the site has yielded 10 human remains, including the unworn crown of a lower permanent molar (MA 93). Using diverse analytical tools (including high resolution μCT and μMRI), we analysed the external and internal macromorphology and microstructure of the three specimens, and whenever possible compared the results with similar evidence from early Homo, H. erectus s.l., H. antecessor, H. heidelbergensis (from North Africa), Neanderthals and modern humans. We also assessed the UA 369 lower incisor from Uadi Aalad for root completion timing and showed that it compares well with data for root apex closure in modern human populations. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. The alteration of mRNA expression of SOD and GPX genes, and proteins in tomato (Lycopersicon esculentum Mill) under stress of NaCl and/or ZnO nanoparticles.

    PubMed

    Alharby, Hesham F; Metwali, Ehab M R; Fuller, Michael P; Aldhebiani, Amal Y

    2016-11-01

    Five cultivars of tomato having different levels of salt stress tolerance were exposed to different treatments of NaCl (0, 3 and 6 g L -1 ) and ZnO-NPs (0, 15 and 30 mg L -1 ). Treatments with NaCl at both 3 and 6 g L -1 suppressed the mRNA levels of superoxide dismutase (SOD) and glutathione peroxidase (GPX) genes in all cultivars while plants treated with ZnO-NPs in the presence of NaCl, showed increments in the mRNA expression levels. This indicated that ZnO-NPs had a positive response on plant metabolism under salt stress. Superior expression levels of mRNA were observed in the salt tolerant cultivars, Sandpoint and Edkawy while the lowest level was detected in the salt sensitive cultivar, Anna Aasa. SDS-PAGE showed clear differences in patterns of protein expression among the cultivars. A negative protein marker for salt sensitivity and ZnO-NPs was detected in cv. Anna Aasa at a molecular weight of 19.162 kDa, while the tolerant cultivar Edkawy had two positive markers at molecular weights of 74.991 and 79.735 kDa.

  16. Increasing ammonia concentration trends in large regions of the USA derived from the NADP/AMoN network

    NASA Astrophysics Data System (ADS)

    Butler, T.; Vermeylen, F.; Lehmann, C. M.; Likens, G. E.; Puchalski, M.

    2016-12-01

    Data from bi-weekly passive samplers from 18 of the longest operating National Atmospheric Deposition Program's (NADP) Ammonia Monitoring Network (AMoN) sites (most operating from 2008 to 2015) show that concentrations of NH3 have been increasing (p-value < 0.0001) over large regions of the USA. This trend is occurring at a seasonal and annual level of aggregation. Using random coefficient models (RCM), the mean slope for the 18 sites combined shows an increase of NH3 concentration of +7% per year, with a 95% confidence interval (C.I.) from +5% to +9% per year. Travel blank corrected data using the same approach show increasing NH3 concentrations of +9% (95% C.I. +5% to +13%) per year. During a comparable period (2008-2014) NADP precipitation chemistry sites in the same regions show significant increasing (p-value = 0.0001) precipitation NH4+ concentrations trends for all sites combined of +5% (95% C.I. +3% to +7%) per year. Emissions inventory data for the study period show nearly constant rates of NH3 emissions, but large reductions in NOx and SO2 emissions. Seasonal air quality data from the Clean Air Status and Trends Network (CASTNET) sites in these regions show significant declines in atmospheric particulate SO42- and NH4+, and particulate NO3- plus HNO3 (total NO3-) during the same period. Less formation of acidic SO4 and NO3, due to reduced SO2 and NOx emissions, provide less substrate to interact with NH3 and form particulate ammonium species. Thus, concentrations of NH3 can increase in the atmosphere even if emissions remain constant. A likely result may be more localized deposition of NH3, as opposed to the more long-range transport and deposition of ammonium nitrate (NH4NO3) and sulfate (NH4)2SO4). Additionally, the spatial distribution of wet and dry acidic deposition will be impacted.

  17. In-situ X-ray diffraction study of phase transformations in the Am-O system

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lebreton, Florent, E-mail: florent.lebreton@cea.fr; GEMH, ENSCI, 87065 Limoges; Belin, Renaud C., E-mail: renaud.belin@cea.fr

    2012-12-15

    In the frame of minor actinides recycling, americium can be transmuted by adding it in UO{sub 2} or (U, Pu)O{sub 2} fuels. Americium oxides exhibiting a higher oxygen potential than U or Pu oxides, its addition alters the fuel properties. To comprehend its influence, a thorough knowledge of the Am-O phase equilibria diagram and of thermal expansion behavior is of main interest. Due to americium scarcity and high radiotoxicity, few experimental reports on this topic are available. Here we present in-situ high-temperature XRD results on the reduction from AmO{sub 2} to Am{sub 2}O{sub 3}. We show that fluorite (Fm-3m) AmO{submore » 2} is reduced to cubic (Ia-3) C Prime -type Am{sub 2}O{sub 3+{delta}}, and then into hexagonal (P6{sub 3}/mmc) A-type Am{sub 2}O{sub 3}, which remains stable up to 1840 K. We also demonstrate the transitional existence of the monoclinic (C2/m) B-type Am{sub 2}O{sub 3}. At last, we describe, for the first time, the thermal expansion behavior of the hexagonal Am{sub 2}O{sub 3} between room temperature and 1840 K. - Graphical abstract: Americium dioxide was in situ studied by high-temperature X-ray diffraction. First, fluorite AmO{sub 2} is reduced to cubic C Prime -type Am{sub 2}O{sub 3+{delta}} and then transforms into hexagonal A-type Am{sub 2}O{sub 3}, which remains stable up to 1840 K. Then, we demonstrate the transitional existence of monoclinic B-type Am{sub 2}O{sub 3}. At last, we describe, for the first time, the thermal expansion of A-type Am{sub 2}O{sub 3} between room temperature and 1840 K. This work may contribute to a better understanding of Am oxide behavior. Highlights: Black-Right-Pointing-Pointer We realize an in-situ high-temperature X-ray diffraction study on an AmO{sub 2} sample. Black-Right-Pointing-Pointer Fluorite AmO{sub 2} transforms to cubic Am{sub 2}O{sub 3+{delta}} and then to hexagonal Am{sub 2}O{sub 3}. Black-Right-Pointing-Pointer Little-known monoclinic Am{sub 2}O{sub 3} is observed during the cubic

  18. Sources and Characterization of Submicron Aerosols in a Rural Forest During the PROPHET-AMOS 2016 Campaign

    NASA Astrophysics Data System (ADS)

    Bui, A. T.; Wallace, H. W., IV; Alvarez, S. L.; Erickson, M.; Alwe, H. D.; May, N.; Cook, R.; Connor, M.; Slade, J. H., Jr.; Shi, Q.; Kavassalis, S.; Tyndall, G. S.; Shepson, P. B.; Pratt, K.; Ault, A. P.; Millet, D. B.; Murphy, J. G.; Usenko, S.; Sheesley, R. J.; Flynn, J. H., III; Griffin, R. J.; Wang, W.

    2017-12-01

    Forests are a rich source of biogenic volatile organic compounds (BVOCs). Oxidation of BVOCs can result in the formation of secondary organic aerosol (SOA) and in the presence of NOx (NO+NO2) produce organic nitrate-containing particles. However, the distribution of both BVOCs and oxidants can be dramatically altered by the physical barriers provided by a forest canopy. Global models currently neglect the effect of these canopies on SOA formation in forested regions. In this work, we characterize non-refractory submicron aerosol (NR-PM1) using a high-resolution time-of-flight aerosol mass spectrometer (HR-ToF-AMS) during the 2016 Program on Oxidants: Photochemistry, Emissions, and Transport-Atmospheric Measurements of Oxidants in Summer (PROPHET-AMOS) campaign. This site is located in a rural forest in northern Michigan and features a tower that allowed for both above and below canopy measurements. Our results indicate that organic aerosols (OA) account for a substantial portion of the NR-PM1 measured at this site. Organic nitrate aerosol can contribute up to 18% of the total OA and an average of 75% of the total measured nitrate aerosol. Episodes of above- and below-canopy NR-PM1 concentration differences indicate that above-canopy OA concentrations can be up to 40% greater than below-canopy, which represents an increase of up to 1.5 µg/m3. Organic fragment ions such as CxHy, CxHyOz, and CxHyO1 contribute to enhanced above-canopy OA concentrations. Positive matrix factorization analysis of the high-resolution OA mass spectra identified three SOA factors: low volatility oxygenated OA (LVOOA), isoprene-derived OOA (ISOOA), and oxygenated organic aerosol. Analysis of air mass backward trajectories and correlations with external data indicate that LVOOA correlates well with sulfate and aged, urban-influenced air masses, whereas ISOOA correlates well with isoprene SOA tracers and air masses originating from semi-remote areas. Our results indicate that the OA at this

  19. On the photo-luminescence properties of sol–gel derived undoped and Dy{sup 3+} ion doped nanocrystalline Scheelite type AMoO{sub 4} (A = Ca, Sr and Ba)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Jena, Paramananda; Gupta, Santosh K., E-mail: santufrnd@gmail.com; Natarajan, V.

    2015-04-15

    Nanocrystalline Scheelite type Dy doped AMoO{sub 4} [where A = Ba, Sr and Ca] samples were prepared by acrylamide assisted sol–gel process and characterized by XRD, FT-Raman, FTIR, SEM and photoluminescence (PL). PL of undoped sample shows blue/green emission in CaMoO{sub 4} and SrMoO{sub 4} but multicolour visible emission leading to near white light in BaMoO{sub 4} nanoparticles; the origin of which is explained. It was observed that on doping 0.5 mol% of Dy{sup 3+} in molybdate samples complete energy transfer takes place in case of SrMoO{sub 4} and BaMoO{sub 4}, but host contributed substantially in Dy doped BaMoO{sub 4}more » sample, resulting in biexponential decay. It was also observed that symmetry around Dy{sup 3+} decreases as the size of alkaline earth ion increases. Due to combined blue, yellow and red colour emission in dysprosium doped sample; all samples showed near white light emission under UV and near UV excitation.« less

  20. Degradation of antibiotic amoxicillin using 1 x 1 molecular sieve-structured manganese oxide.

    PubMed

    Kuan, Wen-Hui; Hu, Ching-Yao; Liu, Bin-Sheng; Tzou, Yu-Min

    2013-01-01

    The kinetics and mechanism ofamoxicillin (AMO) degradation using a 1 x 1 molecular sieve-structured manganese oxide (MnO2) was studied. The presence of the buffer solution (i.e., NaHCO3, NaH2PO4 and KH2PO4) diminished AMO binding to MnO2, thus reducing AMO degradation in the pretest; therefore, all other experiments in this study were conducted without the addition of a buffer. Third-order rate constants, second-order on AMO and first-order on MnO2 increased with elevating pH level (2.81-7.23) from 0.54 to 9.17 M(-2) s(-1), and it decreased to 4.27 M(-2) s(-1) at pH 8.53 beyond the pk(a2) of AMO (7.3). The dissolution of the MnO2 suspension with and without AMO exhibited a similar trend; that is, Mn2+ concentration increased with decreasing pH. However, the dissolution of MnO2 with AMO was greater than that without AMO, except for the reaction occurring at pH 8.53, partially indicating that MnO2 acts as an oxidant in AMO degradation. The preliminary chromatogram data display different products with varying pH reaction s, implying that AMO elimination using this 1 x 1 molecular sieve-structured MnO2 is by adsorption as well as oxidative degradation. A complementary experiment indicates that the amount of oxidatively degraded AMO increases substantially from 65.5% at 4 h to 95% at 48 h, whereas the AMO adsorbed onto MnO2 decreases slightly from 4.5% at4 h to 2.4% at 48 h. The oxidative degradation accounted for more AMO removal than adsorption over the whole reaction course, indicating that the oxidative reaction of AMO on MnO2 dominated the AMO removal.

  1. Contrasting spatial structures of Atlantic Multidecadal Oscillation between observations and slab ocean model simulations

    NASA Astrophysics Data System (ADS)

    Sun, Cheng; Li, Jianping; Kucharski, Fred; Xue, Jiaqing; Li, Xiang

    2018-04-01

    The spatial structure of Atlantic multidecadal oscillation (AMO) is analyzed and compared between the observations and simulations from slab ocean models (SOMs) and fully coupled models. The observed sea surface temperature (SST) pattern of AMO is characterized by a basin-wide monopole structure, and there is a significantly high degree of spatial coherence of decadal SST variations across the entire North Atlantic basin. The observed SST anomalies share a common decadal-scale signal, corresponding to the basin-wide average (i. e., the AMO). In contrast, the simulated AMO in SOMs (AMOs) exhibits a tripole-like structure, with the mid-latitude North Atlantic SST showing an inverse relationship with other parts of the basin, and the SOMs fail to reproduce the observed strong spatial coherence of decadal SST variations associated with the AMO. The observed spatial coherence of AMO SST anomalies is identified as a key feature that can be used to distinguish the AMO mechanism. The tripole-like SST pattern of AMOs in SOMs can be largely explained by the atmosphere-forced thermodynamics mechanism due to the surface heat flux changes associated with the North Atlantic Oscillation (NAO). The thermodynamic forcing of AMOs by the NAO gives rise to a simultaneous inverse NAO-AMOs relationship at both interannual and decadal timescales and a seasonal phase locking of the AMOs variability to the cold season. However, the NAO-forced thermodynamics mechanism cannot explain the observed NAO-AMO relationship and the seasonal phase locking of observed AMO variability to the warm season. At decadal timescales, a strong lagged relationship between NAO and AMO is observed, with the NAO leading by up to two decades, while the simultaneous correlation of NAO with AMO is weak. This lagged relationship and the spatial coherence of AMO can be well understood from the view point of ocean dynamics. A time-integrated NAO index, which reflects the variations in Atlantic meridional overturning

  2. Modulation of the Aleutian-Icelandic Low Seesaw and Its Surface Impacts by the Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Li, F.; Orsolini, Y. J.

    2017-12-01

    Early studies suggested that the Aleutian-Icelandic low seesaw (AIS) features multidecadal variation. In this study, the multidecadal modulation of the AIS and associated surface climate by the Atlantic Multidecadal Oscillation (AMO) during late winter (February-March) is explored with observational data. It is shown that, in the cold phase of the AMO (AMO|-), a clear AIS is established, while this is not the case in the warm phase of the AMO (AMO|+). The surface climate over Eurasia is significantly influenced by the AMO's modulation of the Aleutian low (AL). For example, the weak AL in AMO|- displays warmer surface temperatures over the entire Far East and along the Russian Arctic coast and into Northern Europe, but only over the Russian Far East in AMO|+. Similarly, precipitation decreases over central Europe with the weak AL in AMO|-, but decreases over northern Europe and increases over southern Europe in AMO|+. The mechanism underlying the influence of AMO|- on the AIS can be described as follows: AMO|- weakens the upward component of the Eliassen-Palm flux along the polar waveguide by reducing atmospheric blocking occurrence over the Euro-Atlantic sector, and hence drives an enhanced stratospheric polar vortex. With the intensified polar night jet, the wave trains originating over the central North Pacific can propagate horizontally through North America and extend into the North Atlantic, favoring an eastward-extended Pacific-North America-Atlantic pattern, and resulting in a significant AIS at the surface during late winter.

  3. Modulation of the Aleutian-Icelandic low seesaw and its surface impacts by the Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Li, Fei; Orsolini, Yvan J.; Wang, Huijun; Gao, Yongqi; He, Shengping

    2018-01-01

    Early studies suggested that the Aleutian-Icelandic low seesaw (AIS) features multidecadal variation. In this study, the multidecadal modulation of the AIS and associated surface climate by the Atlantic Multidecadal Oscillation (AMO) during late winter (February-March) is explored with observational data. It is shown that, in the cold phase of the AMO (AMO|-), a clear AIS is established, while this is not the case in the warm phase of the AMO (AMO|+). The surface climate over Eurasia is significantly influenced by the AMO's modulation of the Aleutian low (AL). For example, the weak AL in AMO|- displays warmer surface temperatures over the entire Far East and along the Russian Arctic coast and into Northern Europe, but only over the Russian Far East in AMO|+. Similarly, precipitation decreases over central Europe with the weak AL in AMO|-, but decreases over northern Europe and increases over southern Europe in AMO|+. The mechanism underlying the influence of AMO|- on the AIS can be described as follows: AMO|- weakens the upward component of the Eliassen-Palm flux along the polar waveguide by reducing atmospheric blocking occurrence over the Euro-Atlantic sector, and hence drives an enhanced stratospheric polar vortex. With the intensified polar night jet, the wave trains originating over the central North Pacific can propagate horizontally through North America and extend into the North Atlantic, favoring an eastward-extended Pacific-North America-Atlantic pattern, and resulting in a significant AIS at the surface during late winter.

  4. In vitro activation of ammonia monooxygenase from Nitrosomonas europaea by copper.

    PubMed Central

    Ensign, S A; Hyman, M R; Arp, D J

    1993-01-01

    The effect of copper on the in vivo and in vitro activity of ammonia monooxygenase (AMO) from the nitrifying bacterium Nitrosomonas europaea was investigated. The addition of CuCl2 to cell extracts resulted in 5- to 15-fold stimulation of ammonia-dependent O2 consumption, ammonia-dependent nitrite production, and hydrazine-dependent ethane oxidation. AMO activity was further stimulated in vitro by the presence of stabilizing agents, including serum albumins, spermine, or MgCl2. In contrast, the addition of CuCl2 and stabilizing agents to whole-cell suspensions did not result in any stimulation of AMO activity. The use of the AMO-specific suicide substrate acetylene revealed two populations of AMO in cell extracts. The low, copper-independent (residual) AMO activity was completely inactivated by acetylene in the absence of exogenously added copper. In contrast, the copper-dependent (activable) AMO activity was protected against acetylene inactivation in the absence of copper. However, in the presence of copper both populations of AMO were inactivated by acetylene. [14C]acetylene labelling of the 27-kDa polypeptide of AMO revealed the same extent of label incorporation in both whole cells and optimally copper-stimulated cell extracts. In the absence of copper, the label incorporation in cell extracts was proportional to the level of residual AMO activity. Other metal ions tested, including Zn2+, Co2+, Ni2+, Fe2+, Fe3+, Ca2+, Mg2+, Mn2+, Cr3+, and Ag+, were ineffective at stimulating AMO activity or facilitating the incorporation of 14C label from [14C]acetylene into the 27-kDa polypeptide. On the basis of these results, we propose that loss of AMO activity upon lysis of N. europaea results from the loss of copper from AMO, generating a catalytically inactive, yet stable and activable, form of the enzyme. Images PMID:8458839

  5. Toward a Reconstruction of the Atlantic Multidecadal Oscillation Using Shell-based Records from Coastal Northern Norway

    NASA Astrophysics Data System (ADS)

    Mette, M.; Wanamaker, A. D.; Carroll, M.; Ambrose, W. G., Jr.; Retelle, M.

    2016-02-01

    North Atlantic sea surface temperatures over the past 150 years have exhibited multidecadal variability, switching between relatively warm and cool periods, described by the Atlantic Multidecadal Oscillation (AMO). The influence, persistence, and causes of the AMO, however, are debated because instrumental records of North Atlantic sea surface temperatures only capture 2 cycles of this 60 to 80 year mode. Thus far, AMO reconstructions have been largely based on terrestrial archives despite the fact that the AMO is an oceanic mode. Proxy records from the marine realm are therefore necessary to better understand the behavior of the AMO over recent centuries. We present continuous, annual shell-based records of oxygen isotopes and growth from the long-lived marine bivalve Arctica islandica from coastal northern Norway (71 °N) from 1900-2012 that strongly relate to the instrumental AMO record (r = -0.59, p < 0.01). We performed calibration/verification analysis in order to assess the potential for these records to contribute to AMO reconstructions. We also compare our record with other proxy reconstructions of AMO variability over the past century. Our results show that extending shell-based records to past centuries will provide valuable information about AMO variability.

  6. Thaumarchaeal amoA and nirK Gene Abundance Patterns Reveal Spatiotemporal Dynamics of Ammonia-oxidizing Archaeal Populations in Monterey Bay, CA

    NASA Astrophysics Data System (ADS)

    Tolar, B. B.; Reji, L.; Smith, J. M.; Chavez, F.; Francis, C.

    2016-12-01

    Thaumarchaeaota are among the most abundant microorganisms on the planet, and are significant players in the global nitrogen cycle. All cultivated members of the phylum are capable of performing the first and rate-limiting step of nitrification - the aerobic oxidation of ammonia to nitrite. In marine environments, ammonia-oxidizing archaea (AOA) have been found to greatly outnumber their bacterial counterparts. However, much about their ecology remains largely unknown. Monterey Bay, a non-estuarine embayment on the central California coast, is an ideal site for studying the dynamics of natural thaumarchaeal assemblages, given the highly dynamic nature of the Bay waters with seasonal upwelling episodes and the associated steep gradients in environmental variables. In the present study, we examined thaumarchaeal population dynamics in the upper Monterey Bay water column (0-500 m) using multiple molecular markers. Following high-resolution spatiotemporal sampling (i.e., up to 10 depths sampled monthly over a period of 2 years) at two stations in the Bay, we quantified thaumarchaeal functional genes - the ammonia monooxygenase (amoA) gene and its `shallow' and `deep' marine ecotypes, and variants of the marine nitrite reductase (nirK) gene. The abundances of both genes were regressed against environmental variables to gain insights into factors shaping their spatiotemporal dynamics in the Bay. Gene abundances at both stations varied with depth and season, with winter months generally having several orders of magnitude greater abundances. Statistical analyses point to differential controls on the gene abundances, with depth and temperature potentially being the major environmental determinants of thaumarchaeal population size. Our results also highlight the importance of employing multiple marker genes to gain a more highly resolved picture of thaumarchaeal population dynamics in complex environmental systems such as the coastal ocean.

  7. Observations of Nitrogen Oxides Diurnal Variations and Eddy Covariance Fluxes above a Mixed Hardwood Forest during the 2016 PROPHET-AMOS Campaign

    NASA Astrophysics Data System (ADS)

    Shi, Q.; Kavassalis, S.; Moravek, A.; Steiner, A.; Murphy, J. G.

    2017-12-01

    Nitrogen oxides (NOx = NO + NO2) are important constituents in the atmosphere because they can control ozone production and undergo oxidation reactions with other species. Deposition and emission of NOx can impact the ecosystem by influencing the nitrogen cycle, vegetation health and forest carbon storage. Exchange of NOx between the atmosphere and biosphere is poorly understood due to a lack of direct observations. Here, we present results of nitrogen oxides observations and eddy covariance fluxes above a forest from the 2016 PROPHET-AMOS summer field campaign using a custom built AQD NOxy instrument. This field site is in a mixed deciduous and coniferous forest located in northern Michigan, with a research tower available for above-canopy measurements. Observations made at 29 m show the mixing ratio of NO and NO2 ranges from 0 to 640 ppt and 68 to 3600 ppt respectively. The night-time NO mixing ratio is close to zero, while NO2 builds up to a median of around 700 ppt. A maximum mixing ratio of NO resulting from photolysis of NO2 is frequently observed in the early morning. Median midday NO and NO2 mixing ratios are 50 ppt and 500 ppt. Fluxes calculated by eddy covariance showed an upward flux of NO2 and a downward flux of NO, which is an example of chemical flux divergence due to fast chemistry and diminished solar radiation below the canopy. Daytime fluxes of NO and NO2 peak at similar times in the morning, resulting in a net downward NOx flux with a maximum around 2.5 ppt m/s. To better explain NOx flux observations in this forest, results are compared to previous measurements of the total deposition budget of reactive nitrogen oxides, as well as results from 1-D canopy model FORCAsT.

  8. MCPIP1 Regulates Alveolar Macrophage Apoptosis and Pulmonary Fibroblast Activation After in vitro Exposure to Silica.

    PubMed

    Wang, Xingang; Zhang, Yuxia; Zhang, Wei; Liu, Haijun; Zhou, Zewei; Dai, Xiaoniu; Cheng, Yusi; Fang, Shencun; Zhang, Yingming; Yao, Honghong; Chao, Jie

    2016-05-01

    Silicosis is a fatal and fibrotic pulmonary disease caused by the inhalation of silica. After arriving at the alveoli, silica is ingested by alveolar macrophages (AMOs), in which monocyte chemotactic protein-induced protein 1 (MCPIP1) plays an essential role in controlling macrophage-mediated inflammatory responses. However, the mechanism of action of MCPIP1 in silicosis is poorly understood. Primary rat AMOs were isolated and treated with SiO2 (50 µg/cm(2)). MCPIP1 and AMO activation/apoptosis markers were detected by immunoblotting. MCPIP1 was down-regulated using siRNA in AMOs. The effects of AMOs on fibroblast activation and migration were evaluated using a gel contraction assay, a scratch assay, and a nested collagen matrix migration model. After exposure to SiO2, MCPIP1 was significantly increased in rat AMOs. Activation and apoptosis markers in AMOs were up-regulated after exposure to SiO2 Following siRNA-mediated silencing of MCPIP1 mRNA, the markers of AMO activation and apoptosis were significantly decreased. Rat pulmonary fibroblasts (PFBs) cultured in conditional medium from AMOs treated with MCPIP1 siRNA and SiO2 showed significantly less activation and migration compared with those cultured in conditional medium from AMOs treated with control siRNA and SiO2 CONCLUSION: Our data suggest a vital role for MCPIP1 in AMO apoptosis and PFB activation/migration induced by SiO2. © The Author 2016. Published by Oxford University Press on behalf of the Society of Toxicology. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  9. Characterization of pentavalent and hexavalent americium complexes in nitric acid using X-ray absorption fine structure spectroscopy and first-principles modeling

    DOE PAGES

    Riddle, Catherine; Czerwinski, Kenneth; Kim, Eunja; ...

    2016-01-18

    We studied the speciation of pentavalent and hexavalent americium (Am) complexes in nitric acidicby X-ray absorption fine structure spectroscopy (XAFS), UV-visible spectroscopy, and density functional theory (DFT). Extended x-ray absorption fine structure (EXAFS) and x-ray absorption near edge structure (XANES) results were consistent with the presence of a mixture of AmO 2 + and AmO 2 2+ with only a small amount AmO 2 present. The resulting average bond distances we found were 1.71 Å for Am=O and 2.44 Å for Am-O. All-electron scalar relativistic calculations were also carried out using DFT to predict the equilibrium geometries and properties ofmore » the AmO 2 + and AmO 2 2+ aquo complexes. Calculated bond distances for the Am(VI) complex are in reasonable agreement with EXAFS data and the computed energy gaps between frontier molecular orbitals suggest a slightly higher kinetic stability and chemical hardness of Am(VI) compared to Am(V).« less

  10. Physical map location of the multicopy genes coding for ammonia monooxygenase and hydroxylamine oxidoreductase in the ammonia-oxidizing bacterium Nitrosomonas sp. strain ENI-11.

    PubMed

    Hirota, R; Yamagata, A; Kato, J; Kuroda, A; Ikeda, T; Takiguchi, N; Ohtake, H

    2000-02-01

    Pulsed-field gel electrophoresis of PmeI digests of the Nitrosomonas sp. strain ENI-11 chromosome produced four bands ranging from 1,200 to 480 kb in size. Southern hybridizations suggested that a 487-kb PmeI fragment contained two copies of the amoCAB genes, coding for ammonia monooxygenase (designated amoCAB(1) and amoCAB(2)), and three copies of the hao gene, coding for hydroxylamine oxidoreductase (hao(1), hao(2), and hao(3)). In this DNA fragment, amoCAB(1) and amoCAB(2) were about 390 kb apart, while hao(1), hao(2), and hao(3) were separated by at least about 100 kb from each other. Interestingly, hao(1) and hao(2) were located relatively close to amoCAB(1) and amoCAB(2), respectively. DNA sequence analysis revealed that hao(1) and hao(2) shared 160 identical nucleotides immediately upstream of each translation initiation codon. However, hao(3) showed only 30% nucleotide identity in the 160-bp corresponding region.

  11. Physical Map Location of the Multicopy Genes Coding for Ammonia Monooxygenase and Hydroxylamine Oxidoreductase in the Ammonia-Oxidizing Bacterium Nitrosomonas sp. Strain ENI-11

    PubMed Central

    Hirota, Ryuichi; Yamagata, Akira; Kato, Junichi; Kuroda, Akio; Ikeda, Tsukasa; Takiguchi, Noboru; Ohtake, Hisao

    2000-01-01

    Pulsed-field gel electrophoresis of PmeI digests of the Nitrosomonas sp. strain ENI-11 chromosome produced four bands ranging from 1,200 to 480 kb in size. Southern hybridizations suggested that a 487-kb PmeI fragment contained two copies of the amoCAB genes, coding for ammonia monooxygenase (designated amoCAB1 and amoCAB2), and three copies of the hao gene, coding for hydroxylamine oxidoreductase (hao1, hao2, and hao3). In this DNA fragment, amoCAB1 and amoCAB2 were about 390 kb apart, while hao1, hao2, and hao3 were separated by at least about 100 kb from each other. Interestingly, hao1 and hao2 were located relatively close to amoCAB1 and amoCAB2, respectively. DNA sequence analysis revealed that hao1 and hao2 shared 160 identical nucleotides immediately upstream of each translation initiation codon. However, hao3 showed only 30% nucleotide identity in the 160-bp corresponding region. PMID:10633121

  12. The impact of large-scale circulation patterns on summer crop yields in IP

    NASA Astrophysics Data System (ADS)

    Capa Morocho, Mirian; Rodríguez Fonseca, Belén; Ruiz Ramos, Margarita

    2014-05-01

    Large-scale circulations patterns (ENSO, NAO) have been shown to have a significant impact on seasonal weather, and therefore on crop yield over many parts of the world(Garnett and Khandekar, 1992; Aasa et al., 2004; Rozas and Garcia-Gonzalez, 2012). In this study, we analyze the influence of large-scale circulation patterns and regional climate on the principal components of maize yield variability in Iberian Peninsula (IP) using reanalysis datasets. Additionally, we investigate the modulation of these relationships by multidecadal patterns. This study is performed analyzing long time series of maize yield, only climate dependent, computed with the crop model CERES-maize (Jones and Kiniry, 1986) included in Decision Support System for Agrotechnology Transfer (DSSAT v.4.5). To simulate yields, reanalysis daily data of radiation, maximum and minimum temperature and precipitation were used. The reanalysis climate data were obtained from National Center for Environmental Prediction (20th Century and NCEP) and European Centre for Medium-Range Weather Forecasts (ECMWF) data server (ERA 40 and ERA Interim). Simulations were run at five locations: Lugo (northwestern), Lerida (NE), Madrid (central), Albacete (southeastern) and Córdoba (S IP) (Gabaldón et al., 2013). From these time series standardized anomalies were calculated. Afterwards, time series were time filtered to focus on the interannual-to-multiannual variability, splitting up in two components: low frequency (LF) and high frequency (HF) time scales. The principal components of HF yield anomalies in IP were compared with a set of documented patterns. These relationships were compared with multidecadal patterns, as Atlanctic Multidecadal Oscillations (AMO) and Interdecadal Pacific Oscillations (IPO). The results of this study have important implications in crop forecasting. In this way, it may have a positive impact on both public (agricultural planning) and private (decision support to farmers, insurance

  13. Decadal modulation of the ENSO-East Asian winter monsoon relationship by the Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Geng, Xin; Zhang, Wenjun; Stuecker, Malte F.; Liu, Peng; Jin, Fei-Fei; Tan, Guirong

    2017-10-01

    This work investigates the decadal modulation of the El Niño-Southern Oscillation (ENSO)-East Asian winter monsoon (EAWM) relationship by the Atlantic Multidecadal Oscillation (AMO). A stable ENSO-EAWM relationship is found during the positive AMO phase but not during the negative phase. While the impact of El Niño events on the EAWM does not depend on the AMO phase, a different picture is observed for La Niña events. The La Niña boreal winter season coincides with a strengthened EAWM during a positive AMO phase and a weakened EAWM during a negative AMO phase. We suggest that the AMO's modulating effect mainly comprises two pathways that influence ENSO's impact on the EAWM. On one hand, when La Niña coincides with a positive AMO, the warm SST anomalies over the western North Pacific (WNP) are amplified both in intensity and spatial extent, which favors strengthened WNP cyclonic anomalies and an enhanced EAWM. During La Niña with a negative AMO, only very weak SST anomalies occur over the WNP with reduced WNP cyclonic anomalies that are confined to the tropics, thus having little effect on the EAWM. On the other hand, an eastward-propagating Rossby wavetrain across the mid-high latitudes of Eurasia during a warm AMO phase strengthens the Siberian high and thus leads to a strengthened EAWM, while during a cold AMO phase the Siberian high is weakened, leading to a reduced EAWM. In contrast, El Niño and its associated atmospheric responses are relatively strong and stable, independent of the AMO phase. These results carry important implications to the seasonal-to-interannual predictability associated with ENSO.

  14. Below-Canopy Isoprene Nitrate Chemistry and Dynamics in a Mixed Coniferous/Deciduous Forest Canopy during the 2016 PROPHET-AMOS Summer Field Campaign.

    NASA Astrophysics Data System (ADS)

    Desrochers, S. J.; Slade, J. H., Jr.; Shepson, P. B.; Alwe, H. D.; Millet, D. B.; Kavassalis, S.; Shi, Q.; Murphy, J. G.; Bloss, W.; Wood, E.; Stevens, P. S.; Mauldin, L.; Cantrell, C. A.; Kim, T.; Zhou, X.; Helmig, D.; Shutter, J. D.; Rivera, J. C.; Keutsch, F. N.; Flynn, J. H., III; Alvarez, S. L.; Erickson, M.; Wang, W.; Griffin, R. J.; Bui, A. T.; Kim, K.; Wallace, H. W., IV

    2017-12-01

    Isoprene is the most abundant biogenic volatile organic compound (BVOC) emitted in forest ecosystems. Isoprene hydroxynitrates (IN) can be produced via OH oxidation of isoprene in the presence of NOx, thereby sequestering NOx, and limiting ozone production. Furthermore, IN can lead to the formation of secondary organic aerosols (SOA), which affect air quality and radiative forcing. Forest environments are often complex in terms of isoprene emission as a function of height through the canopy, and to date, there has been little study of chemistry below the canopy. However, the above- and below-canopy environments can be quite different, e.g. in terms of irradiance, NOx, and temperature. Thus, for example, there can be significantly more nitrate radical chemistry below canopy during daytime. Here we present and discuss IN measurements from the 2016 PROPHET-AMOS summer field campaign at the University of Michigan Biological Station (UMBS). IN was sampled from inlets at two heights, below the canopy and within the canopy, using a single quadrupole chemical ionization mass spectrometer, using I- ion chemistry. Differences in [IN] measured from the two inlets varied throughout the campaign, indicating a difference in the importance of light and dark dominated IN production pathways. Measurements of isoprene, terpenes, OH, HONO, HCHO, NOx, O3, HO2, H2O, jO3, jNO2, and jNO3 values conducted during the campaign were used to constrain a 0-D box model to simulate IN concentrations in order to better understand the influence of local-scale chemistry on IN production and destruction, and mixing below and through the forest canopy. Here we will compare measurements with model results, and discuss the implications for IN processing and mixing under the canopy and for nitrogen exchange above and below the forest canopy environment.

  15. Origin of the Ultrafast Response of the Lateral Photovoltaic Effect in Amorphous MoS2/Si Junctions.

    PubMed

    Hu, Chang; Wang, Xianjie; Miao, Peng; Zhang, Lingli; Song, Bingqian; Liu, Weilong; Lv, Zhe; Zhang, Yu; Sui, Yu; Tang, Jinke; Yang, Yanqiang; Song, Bo; Xu, Ping

    2017-05-31

    The lateral photovoltaic (LPV) effect has attracted much attention for a long time because of its application in position-sensitive detectors (PSD). Here, we report the ultrafast response of the LPV in amorphous MoS 2 /Si (a-MoS 2 /Si) junctions prepared by the pulsed laser deposition (PLD) technique. Different orientations of the built-in field and the breakover voltages are observed for a-MoS 2 films deposited on p- and n-type Si wafers, resulting in the induction of positive and negative voltages in the a-MoS 2 /n-Si and a-MoS 2 /p-Si junctions upon laser illumination, respectively. The dependence of the LPV on the position of the illumination shows very high sensitivity (183 mV mm -1 ) and good linearity. The optical relaxation time of LPV with a positive voltage was about 5.8 μs in a-MoS 2 /n-Si junction, whereas the optical relaxation time of LPV with a negative voltage was about 2.1 μs in a-MoS 2 /p-Si junction. Our results clearly suggested that the inversion layer at the a-MoS 2 /Si interface made a good contribution to the ultrafast response of the LPV in a-MoS 2 /Si junctions. The large positional sensitivity and ultrafast relaxation of LPV may promise the a-MoS 2 /Si junction's applications in fast position-sensitive detectors.

  16. The role of historical forcings in simulating the observed Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Goes, L. M.; Cane, M. A.; Bellomo, K.; Clement, A. C.

    2016-12-01

    The variation in basin-wide North Atlantic sea surface temperatures (SST), known as the Atlantic multidecadal oscillation (AMO), affects climate throughout the Northern Hemisphere and tropics, yet the forcing mechanisms are not fully understood. Here, we analyze the AMO in the Coupled Model Intercomparison Project phase 5 (CMIP5) Pre-industrial (PI) and Historical (HIST) simulations to determine the role of historical climate forcings in producing the observed 20th century shifts in the AMO (OBS, 1865-2005). We evaluate whether the agreement between models and observations is better with historical forcings or without forcing - i.e. due to processes internal to the climate system, such as the Atlantic Meridional Overturning Circulation (AMOC). To do this we draw 141-year samples from 38 CMIP5 PI runs and compare the correlation between the PI and HIST AMO to the observed AMO. We find that in the majority of models (24 out of 38), it is very unlikely (less than 10% chance) that the unforced simulations produce agreement with observations that are as high as the forced simulations. We also compare the amplitude of the simulated AMO and find that 87% of models produce multi-decadal variance in the AMO with historical forcings that is very likely higher than without forcing, but most models underestimate the variance of the observed AMO. This indicates that over the 20th century external rather than internal forcing was crucial in setting the pace, phase and amplitude of the AMO.

  17. The pH-dependent long-term stability of an amorphous manganese oxide in smelter-polluted soils: implication for chemical stabilization of metals and metalloids.

    PubMed

    Ettler, Vojtěch; Tomášová, Zdeňka; Komárek, Michael; Mihaljevič, Martin; Šebek, Ondřej; Michálková, Zuzana

    2015-04-09

    An amorphous manganese oxide (AMO) and a Pb smelter-polluted agricultural soil amended with the AMO and incubated for 2 and 6 months were subjected to a pH-static leaching procedure (pH 3-8) to verify the chemical stabilization effect on metals and metalloids. The AMO stability in pure water was pH-dependent with the highest Mn release at pH 3 (47% dissolved) and the lowest at pH 8 (0.14% dissolved). Secondary rhodochrosite (MnCO3) was formed at the AMO surfaces at pH>5. The AMO dissolved significantly less after 6 months of incubation. Sequential extraction analysis indicated that "labile" fraction of As, Pb and Sb in soil significantly decreased after AMO amendment. The pH-static experiments indicated that no effect on leaching was observed for Cd and Zn after AMO treatments, whereas the leaching of As, Cu, Pb and Sb decreased down to 20%, 35%, 7% and 11% of the control, respectively. The remediation efficiency was more pronounced under acidic conditions and the time of incubation generally led to increased retention of the targeted contaminants. The AMO was found to be a promising agent for the chemical stabilization of polluted soils. Copyright © 2015 Elsevier B.V. All rights reserved.

  18. AMOS Seeing Quality Measurements.

    DTIC Science & Technology

    1976-01-01

    Measurement Atmosphere Turbulence Propagation Observatory Acoustic Sounder Maui Optical Station Astronomy Microthermal Probe TEAL BLUE Degradation...presence of the site structures. Instruments used were an acoustic sounder (to probe the altitudes of 100 to 1000 ft), fine- wire microthermal probes...responsibility during the experiment for the microthermal probes. The report itself, while compiled and edited at RADC, may be considered as coming from

  19. Source of nitrous oxide emissions during the cow manure composting process as revealed by isotopomer analysis of and amoA abundance in betaproteobacterial ammonia-oxidizing bacteria.

    PubMed

    Maeda, Koki; Toyoda, Sakae; Shimojima, Ryosuke; Osada, Takashi; Hanajima, Dai; Morioka, Riki; Yoshida, Naohiro

    2010-03-01

    A molecular analysis of betaproteobacterial ammonia oxidizers and a N(2)O isotopomer analysis were conducted to study the sources of N(2)O emissions during the cow manure composting process. Much NO(2)(-)-N and NO(3)(-)-N and the Nitrosomonas europaea-like amoA gene were detected at the surface, especially at the top of the composting pile, suggesting that these ammonia-oxidizing bacteria (AOB) significantly contribute to the nitrification which occurs at the surface layer of compost piles. However, the (15)N site preference within the asymmetric N(2)O molecule (SP = delta(15)N(alpha) - delta(15)N(beta), where (15)N(alpha) and (15)N(beta) represent the (15)N/(14)N ratios at the center and end sites of the nitrogen atoms, respectively) indicated that the source of N(2)O emissions just after the compost was turned originated mainly from the denitrification process. Based on these results, the reduction of accumulated NO(2)(-)-N or NO(3)(-)-N after turning was identified as the main source of N(2)O emissions. The site preference and bulk delta(15)N results also indicate that the rate of N(2)O reduction was relatively low, and an increased value for the site preference indicates that the nitrification which occurred mainly in the surface layer of the pile partially contributed to N(2)O emissions between the turnings.

  20. Excess Claims and Data Trimming in the Context of Credibility Rating Procedures,

    DTIC Science & Technology

    1981-11-01

    Triining in the Context of Credibility Rating Procedures by Hans BShlmann, Alois Gisler, William S. Jewell* 1. Motivation In Ratemaking and in Experience...work on the ETH computer. __.1: " Zen * ’ ’ II / -2- 2. The Basic Model Throughout the paper we work with the most simple model in the credibility...additional structure are summed up by stating that the density -3- f 8 (x) has the following form 1) fe(x) -(1-r)po (x/e) + rape(x) 3. The Basic Problem As

  1. The Atlantic Multidecadal Oscillation without a role for ocean circulation.

    PubMed

    Clement, Amy; Bellomo, Katinka; Murphy, Lisa N; Cane, Mark A; Mauritsen, Thorsten; Rädel, Gaby; Stevens, Bjorn

    2015-10-16

    The Atlantic Multidecadal Oscillation (AMO) is a major mode of climate variability with important societal impacts. Most previous explanations identify the driver of the AMO as the ocean circulation, specifically the Atlantic Meridional Overturning Circulation (AMOC). Here we show that the main features of the observed AMO are reproduced in models where the ocean heat transport is prescribed and thus cannot be the driver. Allowing the ocean circulation to interact with the atmosphere does not significantly alter the characteristics of the AMO in the current generation of climate models. These results suggest that the AMO is the response to stochastic forcing from the mid-latitude atmospheric circulation, with thermal coupling playing a role in the tropics. In this view, the AMOC and other ocean circulation changes would be largely a response to, not a cause of, the AMO. Copyright © 2015, American Association for the Advancement of Science.

  2. AMOchar: Amorphous manganese oxide coating of biochar improves its efficiency at removing metal(loid)s from aqueous solutions.

    PubMed

    Trakal, Lukáš; Michálková, Zuzana; Beesley, Luke; Vítková, Martina; Ouředníček, Petr; Barceló, Andreu Piqueras; Ettler, Vojtěch; Číhalová, Sylva; Komárek, Michael

    2018-06-01

    A novel sorbent made from biochar modified with an amorphous Mn oxide (AMOchar) was compared with pure biochar, pure AMO, AMO+biochar mixtures and biochar+birnessite composite for the removal of various metal(loid)s from aqueous solutions using adsorption and solid-state analyses. In comparison with the pristine biochar, both Mn oxide-biochar composites were able to remove significantly greater quantities of various metal(loid)s from the aqueous solutions, especially at a ratio 2:1 (AMO:biochar). The AMOchar proved most efficient, removing almost 99, 91 and 51% of Pb, As and Cd, respectively. Additionally, AMOchar and AMO+biochar mixture exhibited reduced Mn leaching, compared to pure AMO. Therefore, it is concluded that the synthesis of AMO and biochar is able to produce a double acting sorbent ('dorbent') of enhanced efficiency, compared with the individual deployment of their component materials. Copyright © 2017 Elsevier B.V. All rights reserved.

  3. Development of a Method for Selecting Optimum Sites for the Automatic Mountain Meteorology Observation Station (AMOS) to Improve Predictability of Forest Fires in Inaccessible Area

    NASA Astrophysics Data System (ADS)

    Yoon, S.; Won, M.; Jang, K.; Lim, J.

    2016-12-01

    As there has been a recent increase in the case of forest fires in North Korea descending southward through the De-Militarized Zone (DMZ), ensuring proper response to such events has been a challenge. Therefore, in order to respond and manage these forest fires appropriately, an improvement in the forest fire predictability through integration of mountain weather information observed at the most optimal site is necessary. This study is a proactive case in which a spatial analysis and an on-site assessment method were developed for selecting an optimum site for a mountain weather observation in national forest. For spatial analysis, the class 1 and 2 forest fire danger areas for the past 10 years, accessibility maximum 100m, Automatic Weather Station (AWS) redundancy within 2.5km, and mountain terrains higher than 200m were analyzed. A final overlay analysis was performed to select the candidates for the field assessment. The sites selected through spatial analysis were quantitatively evaluated based on the optimal meteorological environment, forest and hiking trail accessibility, AWS redundancy, and supply of wireless communication and solar powered electricity. The sites with total score of 70 and higher were accepted as adequate. At the final selected sites, an AMOS was established, and integration of mountain and Korea Meteorological Administration (KMA) weather data improved the forest fire predictability in South Korea by 10%. Given these study results, we expect that establishing an automatic mountain meteorology observation station at the optimal sites in inaccessible area and integrating mountain weather data will improve the predictability of forest fires.

  4. The influence of the North Atlantic Ocean variability on the atmosphere in the cold season at seasonal to multidecadal time scales

    NASA Astrophysics Data System (ADS)

    Frankignoul, C.

    2017-12-01

    Observational evidence of an atmospheric response to the North Atlantic horseshoe SST anomalies has been accumulating since the late 90's, suggesting that it drives a negative NAO response during late fall/early winter. The North Atlantic horseshoe SST anomaly is in part stochastically driven by the atmosphere, but at low frequency it is correlated with the Atlantic Multidecadal Oscillation (AMO). Correspondingly, an atmospheric response to the AMO has been detected at low frequency in winter, with a positive AMO phase leading a negative NAO-like pattern, consistent with sensitivity studies with atmospheric general circulation models. Both the subpolar and tropical components of the AMO seem to contribute to its influence on the atmosphere. As North Atlantic SST changes reflects internally-generated SST fluctuations as well the response to anthropogenic and other external forcing, the AMO is sensitive to the way the forced SST signal is removed; estimates of the natural variability of the AMO vary by as much as a factor of two between estimation methods, leading to possible biases in its alleged impacts. Since an intensification of the Atlantic meridional overturning circulation (AMOC) leads the AMO and drives a negative NAO in many climate models, albeit with different lead times, the relation between AMO and AMOC will be discussed, as well as possible links with the North Pacific and sea ice variability.

  5. Evidence of multidecadal climate variability and the Atlantic Multidecadal Oscillation from a Gulf of Mexico sea-surface temperature-proxy record

    USGS Publications Warehouse

    Poore, R.Z.; DeLong, K.L.; Richey, J.N.; Quinn, T.M.

    2009-01-01

    A comparison of a Mg/Ca-based sea-surface temperature (SST)-anomaly record from the northern Gulf of Mexico, a calculated index of variability in observed North Atlantic SST known as the Atlantic Multidecadal Oscillation (AMO), and a tree-ring reconstruction of the AMO contain similar patterns of variation over the last 110 years. Thus, the multidecadal variability observed in the instrumental record is present in the tree-ring and Mg/Ca proxy data. Frequency analysis of the Gulf of Mexico SST record and the tree-ring AMO reconstruction from 1550 to 1990 found similar multidecadal-scale periodicities (???30-60 years). This multidecadal periodicity is about half the observed (60-80 years) variability identified in the AMO for the 20th century. The historical records of hurricane landfalls reveal increased landfalls in the Gulf Coast region during time intervals when the AMO index is positive (warmer SST), and decreased landfalls when the AMO index is negative (cooler SST). Thus, we conclude that alternating intervals of high and low hurricane landfall occurrences may continue on multidecadal timescales along the northern Gulf Coast. However, given the short length of the instrumental record, the actual frequency and stability of the AMO are uncertain, and additional AMO proxy records are needed to establish the character of multidecadal-scale SST variability in the North Atlantic. ?? 2009 US Government.

  6. Declining Enrollment--Closing Schools: Problems & Solutions. AASA Critical Issues Report.

    ERIC Educational Resources Information Center

    Brodinsky, Ben

    Nine chapters and an introduction discuss the issues surrounding school closures and declining enrollment and suggest practical solutions. Each chapter examines a particular facet of the problem, presents brief case studies of successful experiences, and mentions sources for further information. The topics covered include: (1) demographic changes…

  7. Improving School Climate & Culture. AASA Critical Issues Report No. 27.

    ERIC Educational Resources Information Center

    Gonder, Peggy Odell; Hymes, Donald, Ed.

    Climate and culture are inherent in the life of every organization, including schools. They are difficult to define and even more difficult to change, yet any reform effort must address them first if it is to succeed. This report helps school leaders understand these crucial factors and measure their influences on the school. It offers various…

  8. Responses of Ammonia-Oxidizing Bacterial and Archaeal Populations to Organic Nitrogen Amendments in Low-Nutrient Groundwater ▿

    PubMed Central

    Reed, David W.; Smith, Jason M.; Francis, Christopher A.; Fujita, Yoshiko

    2010-01-01

    To evaluate the potential for organic nitrogen addition to stimulate the in situ growth of ammonia oxidizers during a field scale bioremediation trial, samples collected from the Eastern Snake River Plain Aquifer in Idaho before, during, and after the addition of molasses and urea were subjected to PCR analysis of ammonia monooxygenase subunit A (amoA) genes. Ammonia-oxidizing bacteria (AOB) and archaea (AOA) were present in all of the samples tested, with AOA amoA genes outnumbering AOB amoA genes in all of the samples. Following urea addition, nitrate levels rose and bacterial amoA copy numbers increased dramatically, suggesting that urea hydrolysis stimulated nitrification. Bacterial amoA diversity was limited to two Nitrosomonas phylotypes, whereas archaeal amoA analyses revealed 20 distinct operational taxonomic units, including several that were markedly different from all previously reported sequences. Results from this study demonstrate the likelihood of stimulating ammonia-oxidizing communities during field scale manipulation of groundwater conditions to promote urea hydrolysis. PMID:20190081

  9. Source of Nitrous Oxide Emissions during the Cow Manure Composting Process as Revealed by Isotopomer Analysis of and amoA Abundance in Betaproteobacterial Ammonia-Oxidizing Bacteria▿ †

    PubMed Central

    Maeda, Koki; Toyoda, Sakae; Shimojima, Ryosuke; Osada, Takashi; Hanajima, Dai; Morioka, Riki; Yoshida, Naohiro

    2010-01-01

    A molecular analysis of betaproteobacterial ammonia oxidizers and a N2O isotopomer analysis were conducted to study the sources of N2O emissions during the cow manure composting process. Much NO2−-N and NO3−-N and the Nitrosomonas europaea-like amoA gene were detected at the surface, especially at the top of the composting pile, suggesting that these ammonia-oxidizing bacteria (AOB) significantly contribute to the nitrification which occurs at the surface layer of compost piles. However, the 15N site preference within the asymmetric N2O molecule (SP = δ15Nα − δ15Nβ, where 15Nα and 15Nβ represent the 15N/14N ratios at the center and end sites of the nitrogen atoms, respectively) indicated that the source of N2O emissions just after the compost was turned originated mainly from the denitrification process. Based on these results, the reduction of accumulated NO2−-N or NO3−-N after turning was identified as the main source of N2O emissions. The site preference and bulk δ15N results also indicate that the rate of N2O reduction was relatively low, and an increased value for the site preference indicates that the nitrification which occurred mainly in the surface layer of the pile partially contributed to N2O emissions between the turnings. PMID:20048060

  10. Ocean impact on decadal Atlantic climate variability revealed by sea-level observations.

    PubMed

    McCarthy, Gerard D; Haigh, Ivan D; Hirschi, Joël J-M; Grist, Jeremy P; Smeed, David A

    2015-05-28

    Decadal variability is a notable feature of the Atlantic Ocean and the climate of the regions it influences. Prominently, this is manifested in the Atlantic Multidecadal Oscillation (AMO) in sea surface temperatures. Positive (negative) phases of the AMO coincide with warmer (colder) North Atlantic sea surface temperatures. The AMO is linked with decadal climate fluctuations, such as Indian and Sahel rainfall, European summer precipitation, Atlantic hurricanes and variations in global temperatures. It is widely believed that ocean circulation drives the phase changes of the AMO by controlling ocean heat content. However, there are no direct observations of ocean circulation of sufficient length to support this, leading to questions about whether the AMO is controlled from another source. Here we provide observational evidence of the widely hypothesized link between ocean circulation and the AMO. We take a new approach, using sea level along the east coast of the United States to estimate ocean circulation on decadal timescales. We show that ocean circulation responds to the first mode of Atlantic atmospheric forcing, the North Atlantic Oscillation, through circulation changes between the subtropical and subpolar gyres--the intergyre region. These circulation changes affect the decadal evolution of North Atlantic heat content and, consequently, the phases of the AMO. The Atlantic overturning circulation is declining and the AMO is moving to a negative phase. This may offer a brief respite from the persistent rise of global temperatures, but in the coupled system we describe, there are compensating effects. In this case, the negative AMO is associated with a continued acceleration of sea-level rise along the northeast coast of the United States.

  11. Global Three-Dimensional Atmospheric Structure of the Atlantic Multidecadal Oscillation as Revealed by Two Reanalyses

    NASA Astrophysics Data System (ADS)

    Stuckman, Scott Seele

    This study is a first documentation of the structure of the entire AMO life cycle, including extreme and transition phases, throughout the global troposphere. The extreme phase climate signature is constructed based on the strongest and most robust patterns identified by two methods (linear correlation and composite analyses), two reanalysis datasets (the National Centers for Environmental Prediction/National Center for Atmospheric Research and Twentieth Century Reanalysis, supplemented with precipitation data from the University of Delaware dataset) and data from two consecutive AMO cycles. The first characterization of the AMO transition phases uses a transition index based on the time derivative of AMO index. When trying to compare the zonal mean structure of AMO with the El Niño-Southern Oscillation (ENSO), a literature search showed the zonal mean structure of ENSO remained unpublished, despite the otherwise generally well-characterized horizontal structures. Therefore this study includes a seasonal analysis of the ENSO zonal mean structure during boreal winter (DJF) and summer (JJA). The AMO extreme phase is characterized by a blend of low and middle latitude centers of action, with the associated tilt of geopotential height anomaly patterns consistent with off-equatorial heating patterns generated by the Held idealized model. The surface climate signature is connected to the upper air with baroclinic vertical structure over the North Atlantic but barotropic structures elsewhere. The associated zonal mean circulation features three circulation cells globally with strong inter-hemispheric mixing that suggests the traditional view of the AMO involving a Northern-Southern Hemisphere asymmetry is accurate only near the surface. The AMO transition phase features a more equatorial-based climate signature and associated geopotential height anomaly patterns consistent with the Matsuno-Gill idealized model. The zonal mean circulation of the transition phases features

  12. Theoretical Insights into Methane C–H Bond Activation on Alkaline Metal Oxides

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Aljama, Hassan; Nørskov, Jens K.; Abild-Pedersen, Frank

    Here, we investigate the role of alkaline metal oxides (AMO) (MgO, CaO, and SrO) in activating the C–H bond in methane. We also use Density Functional Theory (DFT) and microkinetic modeling to study the catalytic elementary steps in breaking the C–H bond in methane and creating the methyl radical, a precursor prior to creating C2 products. We also study the effects of surface geometry on the catalytic activity of AMO by examining terrace and step sites. We observe that the process of activating methane depends strongly on the structure of the AMO. When the AMO surface is doped with anmore » alkali metal, the transition state (TS) structure has a methyl radical-like behavior, where the methyl radical interacts weakly with the AMO surface. In this case, the TS energy scales with the hydrogen binding energy. On pure AMO, the TS interacts with AMO surface oxygen as well as the metal atom on the surface, and consequently the TS energy scales with the binding energy of hydrogen and methyl. We study the activity of AMO using a mean-field microkinetic model. The results indicate that terrace sites have similar catalytic activity, with the exception of MgO(100). Step sites bind hydrogen more strongly, making them more active, and this confirms previously reported experimental results. We map the catalytic activity of AMO using a volcano plot with two descriptors: the methyl and the hydrogen binding energies, with the latter being a more significant descriptor. The microkinetic model results suggest that C–H bond dissociation is not always the rate-limiting step. At weak hydrogen binding, the reaction is limited by C–H bond activation. At strong hydrogen binding, the reaction is limited due to poisoning of the active site. We found an increase in activity of AMO as the basicity increased. Finally, the developed microkinetic model allows screening for improved catalysts using simple calculations of the hydrogen binding energy.« less

  13. Theoretical Insights into Methane C–H Bond Activation on Alkaline Metal Oxides

    DOE PAGES

    Aljama, Hassan; Nørskov, Jens K.; Abild-Pedersen, Frank

    2017-07-17

    Here, we investigate the role of alkaline metal oxides (AMO) (MgO, CaO, and SrO) in activating the C–H bond in methane. We also use Density Functional Theory (DFT) and microkinetic modeling to study the catalytic elementary steps in breaking the C–H bond in methane and creating the methyl radical, a precursor prior to creating C2 products. We also study the effects of surface geometry on the catalytic activity of AMO by examining terrace and step sites. We observe that the process of activating methane depends strongly on the structure of the AMO. When the AMO surface is doped with anmore » alkali metal, the transition state (TS) structure has a methyl radical-like behavior, where the methyl radical interacts weakly with the AMO surface. In this case, the TS energy scales with the hydrogen binding energy. On pure AMO, the TS interacts with AMO surface oxygen as well as the metal atom on the surface, and consequently the TS energy scales with the binding energy of hydrogen and methyl. We study the activity of AMO using a mean-field microkinetic model. The results indicate that terrace sites have similar catalytic activity, with the exception of MgO(100). Step sites bind hydrogen more strongly, making them more active, and this confirms previously reported experimental results. We map the catalytic activity of AMO using a volcano plot with two descriptors: the methyl and the hydrogen binding energies, with the latter being a more significant descriptor. The microkinetic model results suggest that C–H bond dissociation is not always the rate-limiting step. At weak hydrogen binding, the reaction is limited by C–H bond activation. At strong hydrogen binding, the reaction is limited due to poisoning of the active site. We found an increase in activity of AMO as the basicity increased. Finally, the developed microkinetic model allows screening for improved catalysts using simple calculations of the hydrogen binding energy.« less

  14. The abundance of functional genes, cbbL, nifH, amoA and apsA, and bacterial community structure of intertidal soil from Arabian Sea.

    PubMed

    Keshri, Jitendra; Yousuf, Basit; Mishra, Avinash; Jha, Bhavanath

    2015-06-01

    The Gulf of Cambay is a trumpet-shaped inlet of the Arabian Sea, located along the west coast of India and confronts a high tidal range with strong water currents. The region belongs to a semi-arid zone and saline alkaline intertidal soils are considered biologically extreme. The selected four soil types (S1-S4) were affected by salinity, alkalinity and sodicity. Soil salinity ranged from 20 to 126 dS/m, soil pH 8.6-10.0 with high sodium adsorption ratio (SAR) and exchangeable sodium percentage (ESP). Abundance of the key functional genes like cbbL, nifH, amoA and apsA involved in biogeochemical cycling were targeted using qPCR, which varied from (2.36 ± 0.03) × 10(4) to (2.87 ± 0.26) × 10(8), (1.18 ± 0.28) × 10(6) to (1.01 ± 0.26) × 10(9), (1.41 ± 0.21) × 10(6) to (1.29 ± 0.05) × 10(8) and (8.47 ± 0.23) × 10(4) to (1.73 ± 0.01) × 10(6) per gram dry weight, respectively. The microbial community structure revealed that soils S1 and S3 were dominated by phylum Firmicutes whereas S4 and S2 showed an abundance of Proteobacterial clones. These soils also represented Bacteroidetes, Chloroflexi, Actinobacteria, Planctomycetes and Acidobacteria clones. Molecular phylogeny showed a significant variation in the bacterial community distribution among the intertidal soil types. A high number of novel taxonomic units were observed which makes the intertidal zone a unique reservoir of unidentified bacterial taxa that may be explored further. Copyright © 2015 Elsevier GmbH. All rights reserved.

  15. Exploring 222Rn as a tool for tracing groundwater inflows from eskers and moraines into slope peatlands of the Amos region of Quebec, Canada.

    PubMed

    Berthot, Laureline; Pinti, Daniele L; Larocque, Marie; Gagné, Sylvain; Ferlatte, Miryane; Cloutier, Vincent

    2016-11-01

    Peatlands can play an important role in the hydrological dynamics of a watershed. However, interactions between groundwater and peat water remain poorly understood. Here, we present results of an exploratory study destined to test radon ( 222 Rn) as a potential tracer of groundwater inflows from fluvioglacial landform aquifers to slope peatlands in the Amos region of Quebec, Canada. 222 Rn occurs in groundwater but is expected to be absent from peat water because of its rapid degassing to the atmosphere. Any 222 Rn activity detected in peat water should therefore derive from groundwater inflow. 222 Rn activity was measured in groundwater from municipal, domestic wells and newly drilled and instrumented piezometers from the Saint-Mathieu-Berry and Barraute eskers (n = 9), from the Harricana Moraine (n = 4), and from the fractured bedrock (n = 3). Forty measurements of 222 Rn activity were made from piezometers installed in five slope peatlands, along six transects oriented perpendicular to the fluvioglacial deposits. The relationship between 222 Rn and total dissolved solids (TDS) measured in water from the mineral deposits underlying the peat layer suggests that 222 Rn is introduced by lateral inflow from eskers and moraine together with salinity. This input is then diluted by peat water, depleted in both TDS and 222 Rn. The fact that a relationship between TDS and 222 Rn is visible calls for a continuous inflow of groundwater from lateral eskers/moraines, being 222 Rn rapidly removed from the system by radioactive decay. Although more research is required to improve the sampling and tracing techniques, this work shows the potential of 222 Rn tracer to identify groundwater inflow areas from granular aquifers found in eskers and moraines to slope peatlands. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Preparation and evaluation of amoxicillin loaded dual molecularly imprinted nanoparticles for anti-Helicobacter pylori therapy.

    PubMed

    Wu, Zhihui; Hou, Jiapeng; Wang, Yuyan; Chai, Miaolin; Xiong, Yan; Lu, Weiyue; Pan, Jun

    2015-12-30

    This paper reports studies on preparation and evaluation of amoxicillin loaded dual molecularly imprinted nanoparticles (Amo/Dual-MIPs) designed for anti-H. pylori therapy. Both MNQA and AmoNa were chosen as templates to prepare Dual-MIPs using inverse microemulsion polymerization method. NQA was modified with myristic acid (MNQA) to become amphiphilic and assist in leaving NQA cavities on the surface of Dual-MIPs for H. pylori adhesion. AmoNa was applied to produce imprinting sites in Dual-MIPs for rebinding AmoNa to exert its anti-H. pylori effect. Batch rebinding test demonstrated a preferential rebinding effect of NQA toward the Dual-MIPs. In vivofluorescence imaging showed the prolonged residence time of Dual-MIPs in H. pylori infected mice stomachs after intragastric administration of nanoparticles.In vivo H. pylori clearance tests indicated Amo/Dual-MIPs had a better aniti-H. pylori effect than amoxicillin powder did. In conclusion, Amo/Dual-MIPs may provide an alternative drug delivery strategy for anti-H. pylori therapy. Copyright © 2015 Elsevier B.V. All rights reserved.

  17. Using amorphous manganese oxide for remediation of smelter-polluted soils: a pH-dependent long-term stability study

    NASA Astrophysics Data System (ADS)

    Ettler, Vojtech; Tomasova, Zdenka; Komarek, Michael; Mihaljevic, Martin; Sebek, Ondrej

    2015-04-01

    In soil systems, manganese (Mn) oxides are commonly found to be powerful sorbents of metals and metalloids and are thus potentially useful in soil remediation. A novel amorphous manganese oxide (AMO) and a Pb smelter-polluted agricultural soil amended with the AMO and incubated for 2 and 6 months were subjected to a pH-static leaching procedure (pH = 3 - 8) to verify the chemical stabilization effect on metals and metalloids. The AMO stability in pure water was pH-dependent with the highest Mn release at pH 3 (47% dissolved) and the lowest at pH 8 (0.14% dissolved). Secondary rhodochrosite (MnCO3) was formed at the AMO surfaces at pH > 5. The AMO dissolved significantly less after 6 months of incubation. Sequential extraction analysis indicated that "labile" fraction of As, Pb and Sb in soil significantly decreased after AMO amendment. The pH-static experiments indicated that no effect on leaching was observed for Cd and Zn after AMO treatments, whereas the leaching of As, Cu, Pb and Sb decreased down to 20%, 35%, 7% and 11% of the control, respectively. The remediation efficiency was more pronounced under acidic conditions and the time of incubation generally led to increased retention of the targeted contaminants. The AMO was found to be a promising agent for the chemical stabilization of polluted soils and other in situ applications need to be evaluated. This study was supported by the Czech Science Foundation (GAČR 15-07117S).

  18. Quantum dot-DNA aptamer conjugates coupled with capillary electrophoresis: A universal strategy for ratiometric detection of organophosphorus pesticides.

    PubMed

    Tang, Tingting; Deng, Jingjing; Zhang, Min; Shi, Guoyue; Zhou, Tianshu

    2016-01-01

    Based on the highly sensitivity and stable-fluorescence of water-soluble CdTe/CdS core-shell quantum dots (QDs) with broad-specificity DNA aptamers, a novel ratiometric detection strategy was proposed for the sensitive detection of organophosphorus pesticides by capillary electrophoresis with laser-induced fluorescence (CE-LIF). The as-prepared QDs were first conjugated with the amino-modified oligonucleotide (AMO) by amidation reaction, which is partial complementary to the DNA aptamer of organophosphorus pesticides. Then QD-labeled AMO (QD-AMO) was incubated with the DNA aptamer to form QD-AMO-aptamer duplex. When the target organophosphorus pesticides were added, they could specifically bind the DNA aptamer, leading to the cleavage of QD-AMO-aptamer duplex, accompany with the release of QD-AMO. As a result, the ratio of peak height between QD-AMO and QD-AMO-aptamer duplex changed in the detection process of CE-LIF. This strategy was subsequently applied for the detection of phorate, profenofos, isocarbophos, and omethoate with the detection limits of 0.20, 0.10, 0.17, and 0.23μM, respectively. This is the first report about using QDs as the signal indicators for organophosphorus pesticides detection based on broad-specificity DNA aptamers by CE-LIF, thus contributing to extend the scope of application of QDs in different fields. The proposed method has great potential to be a universal strategy for rapid detection of aptamer-specific small molecule targets by simply changing the types of aptamer sequences. Copyright © 2015 Elsevier B.V. All rights reserved.

  19. Evidence for external forcing of the Atlantic Multidecadal Oscillation since termination of the Little Ice Age.

    PubMed

    Knudsen, Mads Faurschou; Jacobsen, Bo Holm; Seidenkrantz, Marit-Solveig; Olsen, Jesper

    2014-02-25

    The Atlantic Multidecadal Oscillation (AMO) represents a significant driver of Northern Hemisphere climate, but the forcing mechanisms pacing the AMO remain poorly understood. Here we use the available proxy records to investigate the influence of solar and volcanic forcing on the AMO over the last ~450 years. The evidence suggests that external forcing played a dominant role in pacing the AMO after termination of the Little Ice Age (LIA; ca. 1400-1800), with an instantaneous impact on mid-latitude sea-surface temperatures that spread across the North Atlantic over the ensuing ~5 years. In contrast, the role of external forcing was more ambiguous during the LIA. Our study further suggests that the Atlantic Meridional Overturning Circulation is important for linking external forcing with North Atlantic sea-surface temperatures, a conjecture that reconciles two opposing theories concerning the origin of the AMO.

  20. Imprint of the Atlantic Multidecadal Oscillation on Tree-Ring Widths in Northeastern Asia since 1568

    PubMed Central

    Wang, Xiaochun; Brown, Peter M.; Zhang, Yanni; Song, Laiping

    2011-01-01

    We present a new tree-ring reconstruction of the Atlantic Multidecadal Oscillation (AMO) spanning 1568–2007 CE from northeast Asia. Comparison of the instrumental AMO index, an existing tree-ring based AMO reconstruction, and this new record show strongly similar annual to multidecadal patterns of variation over the last 440 years. Warm phases of the AMO are related to increases in growth of Scots pine trees and moisture availability in northeast China and central eastern Siberia. Multi-tape method (MTM) and cross-wavelet analyses indicate that robust multidecadal (∼64–128 years) variability is present throughout the new proxy record. Our results have important implications concerning the influence of North Atlantic sea surface temperatures on East Asian climate, and provide support for the possibility of an AMO signature on global multidecadal climate variability. PMID:21818380

  1. Evidence for external forcing of the Atlantic Multidecadal Oscillation since termination of the Little Ice Age

    PubMed Central

    Knudsen, Mads Faurschou; Jacobsen, Bo Holm; Seidenkrantz, Marit-Solveig; Olsen, Jesper

    2014-01-01

    The Atlantic Multidecadal Oscillation (AMO) represents a significant driver of Northern Hemisphere climate, but the forcing mechanisms pacing the AMO remain poorly understood. Here we use the available proxy records to investigate the influence of solar and volcanic forcing on the AMO over the last ~450 years. The evidence suggests that external forcing played a dominant role in pacing the AMO after termination of the Little Ice Age (LIA; ca. 1400–1800), with an instantaneous impact on mid-latitude sea-surface temperatures that spread across the North Atlantic over the ensuing ~5 years. In contrast, the role of external forcing was more ambiguous during the LIA. Our study further suggests that the Atlantic Meridional Overturning Circulation is important for linking external forcing with North Atlantic sea-surface temperatures, a conjecture that reconciles two opposing theories concerning the origin of the AMO. PMID:24567051

  2. Novel homozygous missense mutation in ALDH7A1 causes neonatal pyridoxine dependent epilepsy.

    PubMed

    Coci, Emanuele G; Codutti, Luca; Fink, Christian; Bartsch, Sophie; Grüning, Gunnar; Lücke, Thomas; Kurth, Ingo; Riedel, Joachim

    2017-04-01

    Pyridoxine dependent epilepsy (PDE) (OMIM#266100) is a neonatal form of epilepsy, caused by dysfunction of the enzyme α-aminoadipic semialdehyde dehydrogenase (ALDH7A1 or Antiquitin). This enzyme converts α-aminoadipic semialdehyde (α-AASA) into α-aminoadipate (AAA), a critical step in the lysine metabolism of the brain. ALDH7A1 dysfunction causes an accumulation of α-AASA and δ 1 -piperideine-6-carboxylic acid (P6C), which are in equilibrium with each other. P6C binds and inactivates pyridoxal 5'-phosphate (PLP), the active form of pyridoxine. Individuals affected by ALDH7A1 deficiency show pre-natal and post-natal seizures, which respond to oral pyridoxine but not to other pediatric anti-epileptic drugs. We discovered a novel missense mutation (c.566G > A, p.Gly189Glu) in homozygous state residing in the NAD+ binding domain coding region of exon 6 and affecting an highly conserved amino acid residue. The seizures stopped under post-natal pyridoxine therapy, nevertheless a longer follow-up is needed to evaluate the intellectual development of the child, who is additionally treated with oral l-arginine since the 13th month of life. Developmental delay with or without structural cortex abnormalities were reported in several patients. A brain MRI scan revealed hyperintense white matter in the right cerebellum compatible with cerebellar gliosis. Taken together, our studies enlarge the group of missense pathogenic mutations of ALDH7A1 gene and reveal a novel cerebellar finding within the PDE patients cohort. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. Phenotype, biochemical features, genotype and treatment outcome of pyridoxine-dependent epilepsy.

    PubMed

    Al Teneiji, Amal; Bruun, Theodora U J; Cordeiro, Dawn; Patel, Jaina; Inbar-Feigenberg, Michal; Weiss, Shelly; Struys, Eduard; Mercimek-Mahmutoglu, Saadet

    2017-04-01

    We report treatment outcome of eleven patients with pyridoxine-dependent epilepsy caused by pathogenic variants in ALDH7A1 (PDE-ALDH7A1). We developed a clinical severity score to compare phenotype with biochemical features, genotype and delays in the initiation of pyridoxine. Clinical severity score included 1) global developmental delay/ intellectual disability; 2) age of seizure onset prior to pyridoxine; 3) current seizures on treatment. Phenotype scored 1-3 = mild; 4-6 = moderate; and 7-9 = severe. Five patients had mild, four patients had moderate, and two patients had severe phenotype. Phenotype ranged from mild to severe in eight patients (no lysine-restricted diet in the infantile period) with more than 10-fold elevated urine or plasma α-AASA levels. Phenotype ranged from mild to moderate in patients with homozygous truncating variants and from moderate to severe in patients with homozygous missense variants. There was no correlation between severity of the phenotype and the degree of α-AASA elevation in urine or genotype. All patients were on pyridoxine, nine patients were on arginine and five patients were on the lysine-restricted diet. 73% of the patients became seizure free on pyridoxine. 25% of the patients had a mild phenotype on pyridoxine monotherapy. Whereas, 100% of the patients, on the lysine-restricted diet initiated within their first 7 months of life, had a mild phenotype. Early initiation of lysine-restricted diet and/or arginine therapy likely improved neurodevelopmental outcome in young patients with PDE-ALDH7A1.

  4. Selected Fe and Mn (nano)oxides as perspective amendments for the stabilization of As in contaminated soils.

    PubMed

    Michálková, Zuzana; Komárek, Michael; Veselská, Veronika; Číhalová, Sylva

    2016-06-01

    An amorphous Mn oxide (AMO), nanomaghemite, and nanomagnetite were used as potential amendments reducing the mobility of As in three contrasting contaminated soils differing in origin of As contamination. Adsorption experiments and XPS analyses combined with incubation batch experiments and pH-static leaching tests were used. The AMO showed excellent adsorption capacity for As(V) reaching a maximum of 1.79 mmol g(-1) at pH 7 and 8. Interestingly, the adsorption capacity in this case decreases with decreasing pH, probably as a result of AMO dissolution at lower pH values. Chemical sorption of As(V) onto AMO was further confirmed with XPS. Both Fe nano-oxides proved the highest adsorption capacity at pH 4 reaching 11 mg g(-1) of adsorbed As(V). The AMO was also the most efficient amendment for decreasing As concentrations in soil solutions during 8 weeks of incubation. Additionally, pH-static leaching tests were performed at pH 4, 5, 6, 7, and natural pH (not adjusted) and AMO again proved the highest ability to decrease As content in leachate. On the other hand, strong dissolution of this amendment at lower pH values (especially pH 4) was observed. For that reason, AMO appears as a promising stabilizing agent for As, especially in neutral, alkaline, or slightly acidic soils, where As(V) species are expected to be more mobile.

  5. Building Morale. Motivating Staff: Problems and Solutions. AASA Critical Issues Report.

    ERIC Educational Resources Information Center

    Brodinsky, Ben; Neill, Shirley Boes, Ed.

    To help school administrators, an introduction and 12 chapters analyze employee morale and motivation and provide both experts' and practitioners' suggestions on how to improve them. The information was gathered from a national questionnaire survey of over 300 educational leaders, school visits, telephone interviews, correspondence, and a…

  6. The role of historical forcings in simulating the observed Atlantic multidecadal oscillation

    NASA Astrophysics Data System (ADS)

    Murphy, Lisa N.; Bellomo, Katinka; Cane, Mark; Clement, Amy

    2017-03-01

    We analyze the Atlantic multidecadal oscillation (AMO) in the preindustrial (PI) and historical (HIST) simulations from the Coupled Model Intercomparison Project Phase 5 (CMIP5) to assess the drivers of the observed AMO from 1865 to 2005. We draw 141 year samples from the 41 CMIP5 model's PI runs and compare the correlation and variance between the observed AMO and the simulated PI and HIST AMO. The correlation coefficients in 38 forced (HIST) models are above the 90% confidence level and explain up to 56% of the observed variance. The probability that any of the unforced (PI) models do as well is less than 3% in 31 models. Multidecadal variability is larger in 39 CMIP5 HIST simulations and in all HIST members of the Community Earth System Model Large Ensemble than their corresponding PI. We conclude that there is an essential role for external forcing in driving the observed AMO.

  7. AMOS Phase IV Annual Report

    DTIC Science & Technology

    1980-06-01

    Microthermal Probe System; 2) Acoustic Sounder; 3) Star Sensor; and i 4) Seeing Monitor. Thý in ..ru. cn.tat -ion, much of it one-of-a-kind prototype...profiles of C 2 N2 3) Acoustic Sounder: an instrument that measures C to 300 m altitude; 4) Microthermal Probes: two systems, consisting of three 2...atmospheric program produced - 146 - Y- MICROTHERMAL NICRPHMERI-AL PROBES (3) _j PPRBES (3) WIND SPEED & WIND SPEED & DIRECTION ---- I- DIRECTION

  8. Protein and lipid oxidative damage and complex I content are lower in the brain of budgerigar and canaries than in mice. Relation to aging rate.

    PubMed

    Pamplona, Reinald; Portero-Otín, Manuel; Sanz, Alberto; Ayala, Victoria; Vasileva, Ekaterina; Barja, Gustavo

    2005-12-01

    What are the mechanisms determining the rate of animal aging? Of the two major classes of endothermic animals, bird species are strikingly long-lived compared to mammals of similar body size and metabolic rate. Thus, they are ideal models to identify longevity-related characteristics not linked to body size or low metabolic rates. Since oxidative stress seems to be related to the basic aging process, we measured specific markers of different kinds of oxidative damage to proteins, like glutamic and aminoadipic semialdehydes (GSA and AASA, specific protein carbonyls), Nɛ-(carboxyethyl)lysine (CEL), Nɛ-(carboxymethyl)lysine (CML), and Nɛ-(malondialdehyde)lysine (MDAL), as well as mitochondrial Complex I content and amino acid and membrane fatty acyl composition, in the brain of short-lived mice (maximum life span [MLSP] 3.5 years) compared with those of long-lived budgerigar 'parakeets' (MLSP, 21 years) and canaries (MLSP, 24 years). The brains of both bird species had significantly lower levels of compounds formed as a result of oxidative (GSA and AASA), glycoxidative (CEL and CML), and lipoxidative (CML and MDAL) protein modifications, as well as a lower levels of mitochondrial complex I protein. Although it is known that fatty acid unsaturation is lower in many tissues of long-lived compared to short-lived mammals, this is not true in the particular case of brain. In agreement with this, we also found that the brain tissue of bugerigars and canaries contains no fewer double bonds than that of mice. Amino acid composition analyses revealed that bird proteins have a significantly lower content of His, Leu and Phe, as well as, interestingly, of methionine, whereas Asp, Glu, Ala, Val, and Lys contents were higher than in the mammals. These results, together with those previously described in other tissues of pigeons (MLSP, 35 years) compared to rats (MLSP, 4 years), indicate that oxidative damage to proteins, lipids and mitochondrial DNA are lower in birds (very

  9. Quantitative analyses of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in fields with different soil types.

    PubMed

    Morimoto, Sho; Hayatsu, Masahito; Takada Hoshino, Yuko; Nagaoka, Kazunari; Yamazaki, Masatsugu; Karasawa, Toshihiko; Takenaka, Makoto; Akiyama, Hiroko

    2011-01-01

    Soil type is one of the key factors affecting soil microbial communities. With regard to ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), however, it has not been determined how soil type affects their community size and soil nitrification activity. Here we quantitatively analyzed the ammonia monooxygenase genes (amoA) of these ammonia oxidizers in fields with three different soil types (Low-humic Andosol [LHA], Gray Lowland Soil [GLS], and Yellow Soil [YS]) under common cropping conditions, and assessed the relationships between soil nitrification activity and the abundance of each amoA. Nitrification activity of LHA was highest, followed by that of GLS and YS; this order was consistent with that for the abundance of AOB amoA. Abundance of AOB amoA showed temporal variation, which was similar to that observed in nitrification activity, and a strong relationship (adjusted R(2)=0.742) was observed between the abundance of AOB amoA and nitrification activity. Abundance of AOA amoA also exhibited a significant relationship (adjusted R(2)=0.228) with nitrification activity, although this relationship was much weaker. Our results indicate that soil type affects the community size of AOA and AOB and the resulting nitrification activity, and that AOB are major contributors to nitrification in soils, while AOA are partially responsible.

  10. Factors affecting the inter-annual to centennial timescale variability of Indian summer monsoon rainfall

    NASA Astrophysics Data System (ADS)

    Malik, Abdul; Brönnimann, Stefan

    2017-09-01

    The Modes of Ocean Variability (MOV) namely Atlantic Multidecadal Oscillation (AMO), Pacific Decadal Oscillation (PDO), and El Niño Southern Oscillation (ENSO) can have significant impacts on Indian Summer Monsoon Rainfall (ISMR) on different timescales. The timescales at which these MOV interacts with ISMR and the factors which may perturb their relationship with ISMR need to be investigated. We employ De-trended Cross-Correlation Analysis (DCCA), and De-trended Partial-Cross-Correlation Analysis (DPCCA) to study the timescales of interaction of ISMR with AMO, PDO, and ENSO using observational dataset (AD 1854-1999), and atmosphere-ocean-chemistry climate model simulations with SOCOL-MPIOM (AD 1600-1999). Further, this study uses De-trended Semi-Partial Cross-Correlation Analysis (DSPCCA) to address the relation between solar variability and the ISMR. We find statistically significant evidence of intrinsic correlations of ISMR with AMO, PDO, and ENSO on different timescales, consistent between model simulations and observations. However, the model fails to capture modulation in intrinsic relationship between ISRM and MOV due to external signals. Our analysis indicates that AMO is a potential source of non-stationary relationship between ISMR and ENSO. Furthermore, the pattern of correlation between ISMR and Total Solar Irradiance (TSI) is inconsistent between observations and model simulations. The observational dataset indicates statistically insignificant negative intrinsic correlation between ISMR and TSI on decadal-to-centennial timescales. This statistically insignificant negative intrinsic correlation is transformed to statistically significant positive extrinsic by AMO on 61-86-year timescale. We propose a new mechanism for Sun-monsoon connection which operates through AMO by changes in summer (June-September; JJAS) meridional gradient of tropospheric temperatures (ΔTTJJAS). There is a negative (positive) intrinsic correlation between ΔTTJJAS (AMO) and

  11. Factors affecting the inter-annual to centennial timescale variability of Indian summer monsoon rainfall

    NASA Astrophysics Data System (ADS)

    Malik, Abdul; Brönnimann, Stefan

    2018-06-01

    The Modes of Ocean Variability (MOV) namely Atlantic Multidecadal Oscillation (AMO), Pacific Decadal Oscillation (PDO), and El Niño Southern Oscillation (ENSO) can have significant impacts on Indian Summer Monsoon Rainfall (ISMR) on different timescales. The timescales at which these MOV interacts with ISMR and the factors which may perturb their relationship with ISMR need to be investigated. We employ De-trended Cross-Correlation Analysis (DCCA), and De-trended Partial-Cross-Correlation Analysis (DPCCA) to study the timescales of interaction of ISMR with AMO, PDO, and ENSO using observational dataset (AD 1854-1999), and atmosphere-ocean-chemistry climate model simulations with SOCOL-MPIOM (AD 1600-1999). Further, this study uses De-trended Semi-Partial Cross-Correlation Analysis (DSPCCA) to address the relation between solar variability and the ISMR. We find statistically significant evidence of intrinsic correlations of ISMR with AMO, PDO, and ENSO on different timescales, consistent between model simulations and observations. However, the model fails to capture modulation in intrinsic relationship between ISRM and MOV due to external signals. Our analysis indicates that AMO is a potential source of non-stationary relationship between ISMR and ENSO. Furthermore, the pattern of correlation between ISMR and Total Solar Irradiance (TSI) is inconsistent between observations and model simulations. The observational dataset indicates statistically insignificant negative intrinsic correlation between ISMR and TSI on decadal-to-centennial timescales. This statistically insignificant negative intrinsic correlation is transformed to statistically significant positive extrinsic by AMO on 61-86-year timescale. We propose a new mechanism for Sun-monsoon connection which operates through AMO by changes in summer (June-September; JJAS) meridional gradient of tropospheric temperatures (ΔTTJJAS). There is a negative (positive) intrinsic correlation between ΔTTJJAS (AMO) and

  12. Improving Process Heating System Performance v3

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    None

    2016-04-11

    Improving Process Heating System Performance: A Sourcebook for Industry is a development of the U.S. Department of Energy (DOE) Advanced Manufacturing Office (AMO) and the Industrial Heating Equipment Association (IHEA). The AMO and IHEA undertook this project as part of an series of sourcebook publications developed by AMO on energy-consuming industrial systems, and opportunities to improve performance. Other topics in this series include compressed air systems, pumping systems, fan systems, steam systems, and motors and drives

  13. Positive low cloud and dust feedbacks amplify tropical North Atlantic Multidecadal Oscillation

    DOE PAGES

    Yuan, Tianle; Oreopoulos, Lazaros; Zelinka, Mark; ...

    2016-02-04

    The Atlantic Multidecadal Oscillation (AMO) is characterized by a horseshoe pattern of sea surface temperature (SST) anomalies and has a wide range of climatic impacts. While the tropical arm of AMO is responsible for many of these impacts, it is either too weak or completely absent in many climate model simulations. Here we show, using both observational and model evidence, that the radiative effect of positive low cloud and dust feedbacks is strong enough to generate the tropical arm of AMO, with the low cloud feedback more dominant. The feedbacks can be understood in a consistent dynamical framework: weakened tropicalmore » trade wind speed in response to a warm middle latitude SST anomaly reduces dust loading and low cloud fraction over the tropical Atlantic, which warms the tropical North Atlantic SST. Together they contribute to the appearance of the tropical arm of AMO. Most current climate models miss both the critical wind speed response and two positive feedbacks though realistic simulations of them may be essential for many climatic studies related to the AMO.« less

  14. Effective Anti-miRNA Oligonucleotides Show High Releasing Rate of MicroRNA from RNA-Induced Silencing Complex.

    PubMed

    Ariyoshi, Jumpei; Matsuyama, Yohei; Kobori, Akio; Murakami, Akira; Sugiyama, Hiroshi; Yamayoshi, Asako

    2017-10-01

    MicroRNAs (miRNAs) regulate gene expression by forming RNA-induced silencing complexes (RISCs) and have been considered as promising therapeutic targets. MiRNA is an essential component of RISC for the modulation of gene expression. Therefore, the release of miRNA from RISC is considered as an effective method for the inhibition of miRNA functions. In our previous study, we reported that anti-miRNA oligonucleotides (AMOs), which are composed of the 2'-O-methyl (2'-OMe) RNA, could induce the release of miRNA from RISC. However, the mechanisms underlying the miRNA-releasing effects of chemically modified AMOs, which are conventionally used as anti-cancer drugs, are still unclear. In this study, we investigated the relationship between the miRNA releasing rate from RISC and the inhibitory effect on RISC activity (IC 50 ) using conventional chemically modified AMOs. We demonstrated that the miRNA-releasing effects of AMOs are directly proportional to the IC 50 values, and AMOs, which have an ability to promote the release of miRNA from RISC, can effectively inhibit RISC activity in living cells.

  15. Positive Low Cloud and Dust Feedbacks Amplify Tropical North Atlantic Multidecadal Variability

    NASA Technical Reports Server (NTRS)

    Yuan, Tianle; Oraiopoulos, Lazaros; Zelinka, Mark; Yu, Hongbin; Norris, Joel R.; Chin, Mian; Platnick, Steven; Meyer, Kerry

    2016-01-01

    The Atlantic Multidecadal Oscillation (AMO) is characterized by a horseshoe pattern of sea surface temperature (SST) anomalies and has a wide range of climatic impacts. While the tropical arm of AMO is responsible for many of these impacts, it is either too weak or completely absent in many climate model simulations. Here we show, using both observational and model evidence, that the radiative effect of positive low cloud and dust feedbacks is strong enough to generate the tropical arm of AMO, with the low cloud feedback more dominant. The feedbacks can be understood in a consistent dynamical framework: weakened tropical trade wind speed in response to a warm middle latitude SST anomaly reduces dust loading and low cloud fraction over the tropical Atlantic, which warms the tropical North Atlantic SST. Together they contribute to appearance of the tropical arm of AMO. Most current climate models miss both the critical wind speed response and two positive feedbacks though realistic simulations of them may be essential for many climatic studies related to the AMO.

  16. Winter Eurasian cooling linked with the Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Luo, Dehai; Chen, Yanan; Dai, Aiguo; Mu, Mu; Zhang, Renhe; Ian, Simmonds

    2017-12-01

    In this paper, we analyze observational and reanalysis data to demonstrate that the Atlantic Multidecadal Oscillation (AMO) significantly modulates winter Eurasian surface air temperature through its impact on the shape, frequency and persistence of Ural blocking (UB) events that last for 10-20 d. This impact results from changes in mid-high latitude westerly winds over Eurasia associated with the warming in the Barents-Kara Seas (BKS) through the AMO-driven high sea surface temperature and sea-ice decline and resultant weakening in meridional temperature gradients. The BKS warming has a strongest positive correlation with the AMO at a time lag of about 14 years. During the recent positive AMO phase, more persistent northwest-southeast (NW-SE) oriented UB events are favored by weakened westerly winds in Eurasian mid-high latitudes. Through cold atmospheric advection and radiative cooling, such UB events produce a strong, persistent and widespread cooling over Eurasia and enhance BKS warming during 1999-2015. However, the positive AMO phase cannot directly produce the Eurasian cooling if the UB is absent. Thus, we conclude that the recent AMO phase change is a major cause of the recent winter cooling over Eurasia through its impact on BKS temperature and sea ice, which in turn affect the meridional temperature gradient, the westerly winds and the UB events.

  17. Energy-Intensive Processes Portfolio: Addressing Key Energy Challenges Across U.S. Industry

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    None

    AMO is developing advanced technologies that cut energy use and carbon emissions in some of the most energy-intensive processes within U.S. manufacturing. The brochure describes the AMO R&D projects that address these challenges.

  18. Algorithm To Architecture Mapping Model (ATAMM) multicomputer operating system functional specification

    NASA Technical Reports Server (NTRS)

    Mielke, R.; Stoughton, J.; Som, S.; Obando, R.; Malekpour, M.; Mandala, B.

    1990-01-01

    A functional description of the ATAMM Multicomputer Operating System is presented. ATAMM (Algorithm to Architecture Mapping Model) is a marked graph model which describes the implementation of large grained, decomposed algorithms on data flow architectures. AMOS, the ATAMM Multicomputer Operating System, is an operating system which implements the ATAMM rules. A first generation version of AMOS which was developed for the Advanced Development Module (ADM) is described. A second generation version of AMOS being developed for the Generic VHSIC Spaceborne Computer (GVSC) is also presented.

  19. Evidence of the Atlantic Multidecadal Oscillation driving multi-decadal variability of summertime surface air quality in the eastern United States: Implications for air quality management in the coming decades

    NASA Astrophysics Data System (ADS)

    Shen, L.; Mickley, L. J.

    2016-12-01

    Atlantic sea surface temperatures have a significant influence on the summertime meteorology and air quality in the eastern United States. In this study, we investigate the effect of the Atlantic Multidecadal Oscillation (AMO) on two key air pollutants, surface ozone and PM2.5, over the eastern United States. The shift of AMO from cold to warm phase increases surface air temperatures by 0.5 K across the East and reduces precipitation, resulting in a warmer and drier summer. By applying observed, present-day relationships between these pollutants and meteorological variables to a variety of observations and historical reanalysis datasets, we calculate the impacts of AMO on U.S. air quality. Our study reveals a multidecadal variability in mean summertime (JJA) maximum daily 8-hour (MDA8) ozone and surface PM2.5 concentrations in the eastern United States. In one-half cycle ( 30 years) of the AMO from negative to positive phase with constant anthropogenic emissions, JJA MDA8 ozone concentrations increase by 1-3 ppbv in the Northeast and 2-5 ppbv in the Great Plains; JJA PM2.5 concentrations increase by 0.8-1.2 μg m-3 in the Northeast and Southeast. The resulting impact on mortality rates is 4000 excess deaths per half cycle of AMO. We suggest that a complete picture of air quality management in coming decades requires consideration of the AMO influence.

  20. Inhibition of ammonia monooxygenase in Nitrosomonas europaea by carbon disulfide.

    PubMed Central

    Hyman, M R; Kim, C Y; Arp, D J

    1990-01-01

    Carbon disulfide has long been recognized as a potent inhibitor of nitrification, and it is the likely active component in several nitrification inhibitors suitable for field use. The effects of this compound on Nitrosomonas europaea have been investigated, and the site of action has been determined. Low concentrations of CS2 (less than 400 microM) produced a time-dependent inhibition of ammonia-dependent O2 uptake but did not inhibit hydrazine-oxidizing activity. CS2 also produced distinct changes in difference spectra of whole cells. These results suggest that ammonia monooxygenase (AMO) is the site of action of CS2. Unlike the case for thiourea and acetylene, saturating concentrations of CS2 did not fully inhibit AMO, and the inhibition resulted in a low but significant rate of ammonia-dependent O2 uptake. The effects of CS2 were not competitive with respect to ammonia concentration, and the inhibition by CS2 did not require the turnover of AMO to take effect. The ability of CS2-treated cells to incorporate [14C]acetylene into the 28-kilodalton polypeptide of AMO was used to demonstrate that the effects of CS2 are compatible with a mode of action which involves a reduction of the rate of turnover of AMO without effects on the catalytic mechanism. It is proposed that CS2 may act on AMO by reversibly reacting with a suitable nucleophilic amino acid in close proximity to the active site copper. Images PMID:2118501

  1. Methylamine-Sensitive Amperometric Biosensor Based on (His)6-Tagged Hansenula polymorpha Methylamine Oxidase Immobilized on the Gold Nanoparticles

    PubMed Central

    Stasyuk, Nataliya Ye.; Smutok, Oleh V.; Zakalskiy, Andriy E.; Zakalska, Oksana M.; Gonchar, Mykhailo V.

    2014-01-01

    A novel methylamine-selective amperometric bienzyme biosensor based on recombinant primary amine oxidase isolated from the recombinant yeast strain Saccharomyces cerevisiae and commercial horseradish peroxidase is described. Two amine oxidase preparations were used: free enzyme (AMO) and covalently immobilized on the surface of gold nanoparticles (AMO-nAu). Some bioanalytical parameters (sensitivity, selectivity, and storage stability) of the developed biosensors were investigated. The sensitivity for both sensors is high: 1450 ± 113 and 700 ± 30 A−1 ·M−1 ·m−2 for AMO-nAu biosensor, respectively. The biosensors exhibit the linear range from 15 μM to 150 μM (AMO-nAu) and from 15 μM to 60 μM (AMO). The developed biosensor demonstrated a good selectivity toward methylamine (MA) (signal for dimethylamine and trimethylamine is less than 5% and for ethylamine 15% compared to MA output) and reveals a satisfactory storage stability. The constructed amperometric biosensor was used for MA assay in real samples of fish products in comparison with chemical method. The values obtained with both approaches different methods demonstrated a high correlation. PMID:25136590

  2. Resolving Management Conflicts Through Associations. The AASA, ASBO, NAESP, NASSP Administrative Team.

    ERIC Educational Resources Information Center

    Shannon, Thomas A.

    In this booklet the author offers advice on how newly decentralized professional associations may render cooperative assistance at State, local, and national levels. The author argues that if these new groups are to succeed, they must be structured to endure the stresses of (1) possessing the machinery to resolve conflicts that arise between…

  3. The Bacteriohopanepolyol Inventory of Novel Aerobic Methane Oxidising Bacteria Reveals New Biomarker Signatures of Aerobic Methanotrophy in Marine Systems

    PubMed Central

    Birgel, Daniel; Kappler, Andreas; Hirayama, Hisako; Peckmann, Jörn; Poulton, Simon W.; Nickel, Julia C.; Mangelsdorf, Kai; Kalyuzhnaya, Marina; Sidgwick, Frances R.; Talbot, Helen M.

    2016-01-01

    Aerobic methane oxidation (AMO) is one of the primary biologic pathways regulating the amount of methane (CH4) released into the environment. AMO acts as a sink of CH4, converting it into carbon dioxide before it reaches the atmosphere. It is of interest for (paleo)climate and carbon cycling studies to identify lipid biomarkers that can be used to trace AMO events, especially at times when the role of methane in the carbon cycle was more pronounced than today. AMO bacteria are known to synthesise bacteriohopanepolyol (BHP) lipids. Preliminary evidence pointed towards 35-aminobacteriohopane-30,31,32,33,34-pentol (aminopentol) being a characteristic biomarker for Type I methanotrophs. Here, the BHP compositions were examined for species of the recently described novel Type I methanotroph bacterial genera Methylomarinum and Methylomarinovum, as well as for a novel species of a Type I Methylomicrobium. Aminopentol was the most abundant BHP only in Methylomarinovum caldicuralii, while Methylomicrobium did not produce aminopentol at all. In addition to the expected regular aminotriol and aminotetrol BHPs, novel structures tentatively identified as methylcarbamate lipids related to C-35 amino-BHPs (MC-BHPs) were found to be synthesised in significant amounts by some AMO cultures. Subsequently, sediments and authigenic carbonates from methane-influenced marine environments were analysed. Most samples also did not contain significant amounts of aminopentol, indicating that aminopentol is not a useful biomarker for marine aerobic methanotophic bacteria. However, the BHP composition of the marine samples do point toward the novel MC-BHPs components being potential new biomarkers for AMO. PMID:27824887

  4. Comparison of PCR primer-based strategies for characterization of ammonia oxidizer communities in environmental samples.

    PubMed

    Mahmood, Shahid; Freitag, Thomas E; Prosser, James I

    2006-06-01

    PCR-based techniques are commonly used to characterize microbial communities, but are subject to bias that is difficult to assess. This study aimed to evaluate bias of several PCR primer-based strategies used to study diversity of autotrophic ammonia oxidizers. 16S rRNA genes from soil- or sediment-DNA were amplified using primers considered either selective or specific for betaproteobacterial ammonia oxidizers. Five approaches were assessed: (a) amplification with primers betaAMO143f-betaAMO1315r; (b) amplification with primers CTO189f-CTO654r; (c) nested amplification with betaAMO143f-betaAMO1315r followed by CTO189f-CTO654r primers; (d) nested amplification with betaAMO143f-betaAMO1315r and CTO189f-Pf1053r primers; (e) nested amplification with 27f-1492r and CTO189f-CTO654r primers. Amplification products were characterized by denaturing gradient gel electrophoresis (DGGE) analysis after further amplification with 357f-GC-518r primers. DGGE profiles of soil communities were heterogeneous and depended on the approach followed. Ammonia oxidizer diversity was higher using approaches (b), (c) and (e) than using (a) and (d), where sequences of the most prominent bands showed similarities to nonammonia oxidizers. Profiles from marine sediments were more consistent, regardless of the approach adopted, and sequence analysis of excised bands indicated that these consisted of ammonia oxidizers only. The study demonstrates the importance of choice of primer, of screening for sequences of nontarget organisms and use of several approaches when characterizing microbial communities in natural environments.

  5. AMOS Phase 3 Program. Volume 1

    DTIC Science & Technology

    1978-03-01

    master and are therefore always connected to the same net, VDL or dial line that the master unit has selected. Binaural headsets are provided which...to the reentry vehicle. The recorded and reduced data is compared to a Beat Estimate of Trajectory (BET) as derived from multiple radar sources

  6. Quantum magnetism in different AMO systems.

    NASA Astrophysics Data System (ADS)

    Rey, Ana Maria

    One of the most important goals of modern quantum sciences is to learn how to control and entangle many-body systems and use them to make powerful and improved quantum devices, materials and technologies. However, since performing full state tomography does not scale favorably with the number of particles, as the size of quantum systems grow, it becomes extremely challenging to identify, and quantify the buildup of quantum correlations and coherence. In this talk I will report on a protocol that we have developed and experimentally demonstrated in a trapped ion quantum magnet in a Penning trap, which can perform quantum simulations of Ising spin models. In those experiments strong spin-spin interactions can be engineered through optical dipole forces that excite phonons of the crystals. The number of ions can be varied from tens to hundreds with high fidelity control. The protocol uses time reversal of the many-body dynamics, to measure out-of-time-order correlation functions (OTOCs). By measuring a family of OTOCs as a function of a tunable parameter we obtain fine-grained information about the state of the system encoded in the multiple quantum coherence spectrum, extract the quantum state purity, and demonstrate the build-up of up to 8-body correlations. We also use the protocol and comparisons to a full solution of the master equation to investigate the impact of spin-motion entanglement and decoherence in the quantum dynamics. Future applications of this protocol could enable studies of manybody localization, quantum phase transitions, and tests of the holographic duality between quantum and gravitational systems. Supported by NSF-PHY-1521080, JILA-NSF PFC-1125844, ARO and AFOSR-MURI.

  7. Vertical profiles of community abundance and diversity of anaerobic methanotrophic archaea (ANME) and bacteria in a simple waste landfill in north China.

    PubMed

    Dong, Jun; Ding, Linjie; Wang, Xu; Chi, Zifang; Lei, Jiansen

    2015-03-01

    Anaerobic methane oxidation (AMO) is considered to be an important sink of CH4 in habitats as marine sediments. But, few studies focused on AMO in landfills which may be an important sink of CH4 derived from waste fermentation. To show evidence of AMO and to uncover function anaerobic methanotroph (ANME) community in landfill, different age waste samples were collected in Jinqianpu landfill located in north China. Through high-throughput sequencing, Methanomicrobiales and Methanosarcinales archaea associated with ANME and reverse methanogenic archaea of Methanosarcina and Methanobacterium were detected. Sulfate-reducing bacteria (SRB) (Desulfobulbus and Desulfococcus) which could couple with ANME-conducting AMO were also found. But, the community structure of ANME had no significant difference with depths. From the results of investigation, we can come to a conclusion that sulfate-dependent anaerobic methane oxidation (SR-DAMO) would be the dominant AMO process in the landfill, while iron-dependent anaerobic methane oxidation (M/IR-DAMO) process was weak though concentration of ferric iron was large in the landfill. Denitrification-dependent anaerobic methane oxidation (NR-DAMO) was negative because of lack of nitrate and relevant function microorganisms in the landfill. Results also indicate that CH4 mitigation would have higher potential by increasing electron acceptor contents and promoting the growth of relevant function microorganisms.

  8. Occurrence and abundance of ammonia-oxidizing archaea and bacteria from the surface to below the water table, in deep soil, and their contributions to nitrification.

    PubMed

    Zheng, Lei; Zhao, Xue; Zhu, Guibing; Yang, Wei; Xia, Chao; Xu, Tao

    2017-08-01

    Using molecular biology methods (qualitative and quantitative PCR), we determined the occurrence and abundance of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) from a dry inland soil in Basel, Switzerland, and from the riparian zone of Baiyangdian Lake, China. We also determined the contributions of these microorganisms to ammonia oxidization at different depths based on the nitrification rate. The number of archaeal amoA genes (the key functional gene in AOA) was larger than the number of bacterial amoA genes in each sample, suggesting a dominant role for the AOA amoA gene in environments with a low ammonium concentration. In Baiyangdian Lake, the number of archaeal amoA genes was highest at 6 m and lowest at 12 m from the land-water interface in the soil (at depths from 40 to 60 cm), close to the groundwater, which suggests that AOA become more competitive in environments with a low dissolved oxygen content and are promoted by low pH. The nitrification rate was significantly negatively correlated with depth in the Baiyangdian Lake soil and significantly positively correlated with the number of AOB amoA genes at this site, 6 m from the water. © 2017 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

  9. Strong Dependence of U.S. Summertime Air Quality on the Decadal Variability of Atlantic Sea Surface Temperatures

    NASA Astrophysics Data System (ADS)

    Shen, Lu; Mickley, Loretta J.; Leibensperger, Eric M.; Li, Mingwei

    2017-12-01

    We find that summertime air quality in the eastern U.S. displays strong dependence on North Atlantic sea surface temperatures, resulting from large-scale ocean-atmosphere interactions. Using observations, reanalysis data sets, and climate model simulations, we further identify a multidecadal variability in surface air quality driven by the Atlantic Multidecadal Oscillation (AMO). In one-half cycle ( 35 years) of the AMO from cold to warm phase, summertime maximum daily 8 h ozone concentrations increase by 1-4 ppbv and PM2.5 concentrations increase by 0.3-1.0 μg m-3 over much of the east. These air quality changes are related to warmer, drier, and more stagnant weather in the AMO warm phase, together with anomalous circulation patterns at the surface and aloft. If the AMO shifts to the cold phase in future years, it could partly offset the climate penalty on U.S. air quality brought by global warming, an effect which should be considered in long-term air quality planning.

  10. Metagenomic Analysis of Ammonia-Oxidizing Archaea Affiliated with the Soil Group

    PubMed Central

    Bartossek, Rita; Spang, Anja; Weidler, Gerhard; Lanzen, Anders; Schleper, Christa

    2012-01-01

    Ammonia-oxidizing archaea (AOA) have recently been recognized as a significant component of many microbial communities and represent one of the most abundant prokaryotic groups in the biosphere. However, only few AOA have been successfully cultivated so far and information on the physiology and genomic content remains scarce. We have performed a metagenomic analysis to extend the knowledge of the AOA affiliated with group I.1b that is widespread in terrestrial habitats and of which no genome sequences has been described yet. A fosmid library was generated from samples of a radioactive thermal cave (46°C) in the Austrian Central Alps in which AOA had been found as a major part of the microbial community. Out of 16 fosmids that possessed either an amoA or 16S rRNA gene affiliating with AOA, 5 were fully sequenced, 4 of which grouped with the soil/I.1b (Nitrososphaera-) lineage, and 1 with marine/I.1a (Nitrosopumilus-) lineage. Phylogenetic analyses of amoBC and an associated conserved gene were congruent with earlier analyses based on amoA and 16S rRNA genes and supported the separation of the soil and marine group. Several putative genes that did not have homologs in currently available marine Thaumarchaeota genomes indicated that AOA of the soil group contain specific genes that are distinct from their marine relatives. Potential cis-regulatory elements around conserved promoter motifs found upstream of the amo genes in sequenced (meta-) genomes differed in marine and soil group AOA. On one fosmid, a group of genes including amoA and amoB were flanked by identical transposable insertion sequences, indicating that amoAB could potentially be co-mobilized in the form of a composite transposon. This might be one of the mechanisms that caused the greater variation in gene order compared to genomes in the marine counterparts. Our findings highlight the genetic diversity within the two major and widespread lineages of Thaumarchaeota. PMID:22723795

  11. Population ecology of nitrifying archaea and bacteria in the Southern California Bight.

    PubMed

    Beman, J Michael; Sachdeva, Rohan; Fuhrman, Jed A

    2010-05-01

    Marine Crenarchaeota are among the most abundant microbial groups in the ocean, and although relatively little is currently known about their biogeochemical roles in marine ecosystems, recognition that Crenarchaeota posses ammonia monooxygenase (amoA) genes and may act as ammonia-oxidizing archaea (AOA) offers another means of probing the ecology of these microorganisms. Here we use a time series approach combining quantification of archaeal and bacterial ammonia oxidizers with bacterial community fingerprints and biogeochemistry, to explore the population and community ecology of nitrification. At multiple depths (150, 500 and 890 m) in the Southern California Bight sampled monthly from 2003 to 2006, AOA were enumerated via quantitative PCR of archaeal amoA and marine group 1 Crenarchaeota 16S rRNA genes. Based on amoA genes, AOA were highly variable in time - a consistent feature of marine Crenarchaeota- however, average values were similar at different depths and ranged from 2.20 to 2.76 x 10(4) amoA copies ml(-1). Archaeal amoA genes were correlated with Crenarchaeota 16S rRNA genes (r(2) = 0.79) and the slope of this relationship was 1.02, demonstrating that the majority of marine group 1 Crenarchaeota present over the dates and depths sampled possessed amoA. Two AOA clades were specifically quantified and compared with betaproteobacterial ammonia-oxidizing bacteria (beta-AOB) amoA genes at 150 m; these AOA groups were found to strongly co-vary in time (r(2) = 0.70, P < 0.001) whereas AOA : beta-AOB ratios ranged from 13 to 5630. Increases in the AOA : beta-AOB ratio correlated with the accumulation of nitrite (r(2) = 0.87, P < 0.001), and may be indicative of differences in substrate affinities and activities leading to periodic decoupling between ammonia and nitrite oxidation. These data capture a dynamic nitrogen cycle in which multiple microbial groups appear to be active participants.

  12. Temporal and spatial distributions of ammonia-oxidizing archaea and bacteria and their ratio as an indicator of oligotrophic conditions in natural wetlands.

    PubMed

    Sims, Atreyee; Horton, John; Gajaraj, Shashikanth; McIntosh, Steve; Miles, Randall J; Mueller, Ryan; Reed, Robert; Hu, Zhiqiang

    2012-09-01

    Ammonia-oxidizing organisms play an important role in wetland water purification and nitrogen cycling. We determined soil nitrification rates and investigated the seasonal and spatial distributions of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in three freshwater wetlands by using specific primers targeting the amoA genes of AOA and AOB and real-time quantitative polymerase chain reaction (qPCR). The nitrifying potentials of wetland soils ranged from 1.4 to 4.0 μg g(-1) day(-1). The specific rates of ammonia oxidation activity by AOA and AOB at the Bee Hollow wetlands were 1.9 fmol NH(3) cell(-1) day(-1) and 36.8 fmol NH(3) cell(-1) day(-1), respectively. Soil nitrification potential was positively correlated with both archaeal and bacterial amoA abundance. However, the gene copies of AOA amoA were higher than those of AOB amoA by at least an order of magnitude in wetland soils and water in both summer and winter over a three year study period. AOB were more sensitive to low temperature than AOA. The amoA gene copy ratios of AOA to AOB in top soils (0-10 cm) ranged from 19 ± 4 to 100 ± 11 among the wetland sites. In contrast, the ratio of the wetland boundary soil was 10 ± 2, which was significantly lower than that of the wetland soils (P < 0.001). The NH(4)(+)-N concentrations in wetland water were lower than 2 mg/L throughout the study. The results suggest that ammonium concentration is a major factor influencing AOA and AOB population in wetlands, although other factors such as temperature, dissolved oxygen, and soil organic matter are involved. AOA are more persistent and more abundant than AOB in the nutrient-depleted oligotrophic wetlands. Therefore, ratio of AOA amoA gene copies to AOB amoA gene copies may serve as a new biological indicator for wetland condition assessment and wetland restoration applications. Copyright © 2012 Elsevier Ltd. All rights reserved.

  13. Autotrophic ammonia oxidation by soil thaumarchaea.

    PubMed

    Zhang, Li-Mei; Offre, Pierre R; He, Ji-Zheng; Verhamme, Daniel T; Nicol, Graeme W; Prosser, James I

    2010-10-05

    Nitrification plays a central role in the global nitrogen cycle and is responsible for significant losses of nitrogen fertilizer, atmospheric pollution by the greenhouse gas nitrous oxide, and nitrate pollution of groundwaters. Ammonia oxidation, the first step in nitrification, was thought to be performed by autotrophic bacteria until the recent discovery of archaeal ammonia oxidizers. Autotrophic archaeal ammonia oxidizers have been cultivated from marine and thermal spring environments, but the relative importance of bacteria and archaea in soil nitrification is unclear and it is believed that soil archaeal ammonia oxidizers may use organic carbon, rather than growing autotrophically. In this soil microcosm study, stable isotope probing was used to demonstrate incorporation of (13)C-enriched carbon dioxide into the genomes of thaumarchaea possessing two functional genes: amoA, encoding a subunit of ammonia monooxygenase that catalyses the first step in ammonia oxidation; and hcd, a key gene in the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle, which has been found so far only in archaea. Nitrification was accompanied by increases in archaeal amoA gene abundance and changes in amoA gene diversity, but no change was observed in bacterial amoA genes. Archaeal, but not bacterial, amoA genes were also detected in (13)C-labeled DNA, demonstrating inorganic CO(2) fixation by archaeal, but not bacterial, ammonia oxidizers. Autotrophic archaeal ammonia oxidation was further supported by coordinate increases in amoA and hcd gene abundance in (13)C-labeled DNA. The results therefore provide direct evidence for a role for archaea in soil ammonia oxidation and demonstrate autotrophic growth of ammonia oxidizing archaea in soil.

  14. Archaea Dominate the Ammonia-Oxidizing Community in Deep-Sea Sediments of the Eastern Indian Ocean—from the Equator to the Bay of Bengal

    PubMed Central

    Wang, Jing; Kan, Jinjun; Zhang, Xiaodong; Xia, Zhiqiang; Zhang, Xuecheng; Qian, Gang; Miao, Yanyi; Leng, Xiaoyun; Sun, Jun

    2017-01-01

    Ammonia-oxidizing Archaea (AOA) and ammonia-oxidizing Bacteria (AOB) oxidize ammonia to nitrite, and therefore play essential roles in nitrification and global nitrogen cycling. To better understand the population structure and the distribution of AOA and AOB in the deep Eastern Indian Ocean (EIO), nine surface sediment samples (>3,300 m depth) were collected during the inter-monsoon Spring 2013. One sediment sample from the South China Sea (SCS; 2,510 m) was also included for comparison. The community composition, species richness, and diversity were characterized by clone libraries (total 1,238 clones), and higher diversity of archaeal amoA genes than bacterial amoA genes was observed in all analyzed samples. Real time qPCR analysis also demonstrated higher abundances (gene copy numbers) of archaeal amoA genes than bacterial amoA genes, and the ratios of AOA/AOB ranged from 1.42 to 8.49 among sites. In addition, unique and distinct clades were found in both reconstructed AOA and AOB phylogeny, suggesting the presence of niche-specific ammonia-oxidizing microorganisms in the EIO. The distribution pattern of both archaeal and bacterial amoA genes revealed by NMDS (non-metric multidimensional scaling) showed a distinct geographic separation of the sample from the SCS and most of the samples from the EIO following nitrogen gradients. Higher abundance and diversity of archaeal amoA genes indicated that AOA may play a more important role than AOB in the deep Indian Ocean. Environmental parameters shaping the distribution pattern of AOA were different from that of AOB, indicating distinct metabolic characteristics and/or adaptation mechanisms between AOA and AOB in the EIO, especially in deep-sea environments. PMID:28360898

  15. Fire history and fire-climate relationships in upper elevation forests of the southwestern United States

    NASA Astrophysics Data System (ADS)

    Margolis, Ellis Quinn

    Fire history and fire-climate relationships of upper elevation forests of the southwestern United States are imperative for informing management decisions in the face of increased crown fire occurrence and climate change. I used dendroecological techniques to reconstruct fires and stand-replacing fire patch size in the Madrean Sky Islands and Mogollon Plateau. Reconstructed patch size (1685-1904) was compared with contemporary patch size (1996-2004). Reconstructed fires at three sites had stand-replacing patches totaling > 500 ha. No historical stand-replacing fire patches were evident in the mixed conifer/aspen forests of the Sky Islands. Maximum stand-replacing fire patch size of modern fires (1129 ha) was greater than that reconstructed from aspen (286 ha) and spruce-fir (521 ha). Undated spruce-fir patches may be evidence of larger (>2000ha) stand-replacing fire patches. To provide climatological context for fire history I used correlation and regionalization analyses to document spatial and temporal variability in climate regions, and El-Nino Southern Oscillation (ENSO), the Pacific Decadal Oscillation (PDO) and the Atlantic Multi-decadal Oscillation (AMO) teleconnections using 273 tree-ring chronologies (1732-1979). Four regions were determined by common variability in annual ring width. The component score time series replicate spatial variability in 20th century droughts (e.g., 1950's) and pluvials (e.g., 1910's). Two regions were significantly correlated with instrumental SOI and AMO, and three with PDO. Sub-regions within the southwestern U.S. varied geographically between the instrumental (1900-1979) and the pre-instrumental periods (1732-1899). Mapped correlations between ENSO, PDO and AMO, and tree-ring indices illustrate detailed sub-regional variability in the teleconnections. I analyzed climate teleconnections, and fire-climate relationships of historical upper elevation fires from 16 sites in 8 mountain ranges. I tested for links between Palmer

  16. Bioconversion of Airborne Methylamine by Immobilized Recombinant Amine Oxidase from the Thermotolerant Yeast Hansenula polymorpha

    PubMed Central

    Sigawi, Sasi; Nitzan, Yeshayahu

    2014-01-01

    Aliphatic amines, including methylamine, are air-pollutants, due to their intensive use in industry and the natural degradation of proteins, amino acids, and other nitrogen-containing compounds in biological samples. It is necessary to develop systems for removal of methylamine from the air, since airborne methylamine has a negative effect on human health. The primary amine oxidase (primary amine : oxygen oxidoreductase (deaminating) or amine oxidase, AMO; EC 1.4.3.21), a copper-containing enzyme from the thermotolerant yeast Hansenula polymorpha which was overexpressed in baker's yeast Saccharomyces cerevisiae, was tested for its ability to oxidize airborne methylamine. A continuous fluidized bed bioreactor (CFBR) was designed to enable bioconversion of airborne methylamine by AMO immobilized in calcium alginate (CA) beads. The results demonstrated that the bioreactor with immobilized AMO eliminates nearly 97% of the airborne methylamine. However, the enzymatic activity of AMO causes formation of formaldehyde. A two-step bioconversion process was therefore proposed. In the first step, airborne methylamine was fed into a CFBR which contained immobilized AMO. In the second step, the gas flow was passed through another CFBR, with alcohol oxidase from the yeast H. polymorpha immobilized in CA, in order to decompose the formaldehyde formed in the first step. The proposed system provided almost total elimination of the airborne methylamine and the formaldehyde. PMID:24672387

  17. Assessment of Changes in Microbial Community Structure during Operation of an Ammonia Biofilter with Molecular Tools

    PubMed Central

    Sakano, Y.; Kerkhof, L.

    1998-01-01

    Biofiltration has been used for two decades to remove odors and various volatile organic and inorganic compounds in contaminated off-gas streams. Although biofiltration is widely practiced, there have been few studies of the bacteria responsible for the removal of air contaminants in biofilters. In this study, molecular techniques were used to identify bacteria in a laboratory-scale ammonia biofilter. Both 16S rRNA and ammonia monooxygenase (amoA) genes were used to characterize the heterotrophic and ammonia-oxidizing bacteria collected from the biofilter during a 102-day experiment. The overall diversity of the heterotrophic microbial population appeared to decrease by 38% at the end of the experiment. The community structure of the heterotrophic population also shifted from predominantly members of two subdivisions of the Proteobacteria (the beta and gamma subdivisions) to members of one subdivision (the gamma subdivision). An overall decrease in the diversity of ammonia monooxygenase genes was not observed. However, a shift from groups dominated by organisms containing Nitrosomonas-like and Nitrosospira-like amoA genes to groups dominated by organisms containing only Nitrosospira-like amoA genes was observed. In addition, a new amoA gene was discovered. This new gene is the first freshwater amoA gene that is closely affiliated with Nitrosococcus oceanus and the particulate methane monooxygenase gene from the methane oxidizers belonging to the gamma subdivision of the Proteobacteria. PMID:9835577

  18. [Effects of continuous cropping of vegetables on ammonia oxidizers community structure].

    PubMed

    Meng, De-Long; Yang, Yang; Wu, Yan-Zheng; Wu, Min-Na; Qin, Hong-Ling; Zhu, Yi-Jun; Wei, Wen-Xue

    2012-04-01

    Investigations were conducted on the effects of intensive application of chemical fertilizers in crop production on soil nitrifier communities and the relationship between nitrifier communities and soil nitrification ability. Two series of vegetable soils were selected from Huangxing, Changsha, reflecting continuous vegetable cropping with about 20 years and new vegetable field with only about 2 years vegetable growing history. In each series five independent topsoils (0-20 cm) were sampled and each soil was a mixture of 10 cores randomly taken in the same field. Terminal restriction fragment length polymorphism (T-RFLP) and quantity PCR (Q-PCR) were used to determine the composition and abundance of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) communities. Results indicated that long-term and continuous vegetable cropping obviously changed the compositions of both AOB and AOA amoA gene, soil pH and Olsen-P content were the dominant factors affecting the composition of AOB amoA. In the vegetable soils, although the copy number of AOA amoA gene was about 5 times higher than AOB amoA gene, no significant correlation was detected between AOA amoA gene abundance and soil nitrification rate. It was not sure whether long-term and continuous vegetable cropping could shift the abundance of AOB and AOA, but it resulted in the enrichment of some dominant AOB species and increase of soil nitrification potential (PNF).

  19. Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools

    NASA Technical Reports Server (NTRS)

    Sakano, Y.; Kerkhof, L.; Janes, H. W. (Principal Investigator)

    1998-01-01

    Biofiltration has been used for two decades to remove odors and various volatile organic and inorganic compounds in contaminated off-gas streams. Although biofiltration is widely practiced, there have been few studies of the bacteria responsible for the removal of air contaminants in biofilters. In this study, molecular techniques were used to identify bacteria in a laboratory-scale ammonia biofilter. Both 16S rRNA and ammonia monooxygenase (amoA) genes were used to characterize the heterotrophic and ammonia-oxidizing bacteria collected from the biofilter during a 102-day experiment. The overall diversity of the heterotrophic microbial population appeared to decrease by 38% at the end of the experiment. The community structure of the heterotrophic population also shifted from predominantly members of two subdivisions of the Proteobacteria (the beta and gamma subdivisions) to members of one subdivision (the gamma subdivision). An overall decrease in the diversity of ammonia monooxygenase genes was not observed. However, a shift from groups dominated by organisms containing Nitrosomonas-like and Nitrosospira-like amoA genes to groups dominated by organisms containing only Nitrosospira-like amoA genes was observed. In addition, a new amoA gene was discovered. This new gene is the first freshwater amoA gene that is closely affiliated with Nitrosococcus oceanus and the particulate methane monooxygenase gene from the methane oxidizers belonging to the gamma subdivision of the Proteobacteria.

  20. Laparoscopic Roux-en-Y gastric bypass in adolescents with severe obesity (AMOS): a prospective, 5-year, Swedish nationwide study.

    PubMed

    Olbers, Torsten; Beamish, Andrew J; Gronowitz, Eva; Flodmark, Carl-Erik; Dahlgren, Jovanna; Bruze, Gustaf; Ekbom, Kerstin; Friberg, Peter; Göthberg, Gunnar; Järvholm, Kajsa; Karlsson, Jan; Mårild, Staffan; Neovius, Martin; Peltonen, Markku; Marcus, Claude

    2017-03-01

    Severe obesity in adolescence is associated with reduced life expectancy and impaired quality of life. Long-term benefits of conservative treatments in adolescents are known to be modest, whereas short-term outcomes of adolescent bariatric surgery are promising. We aimed to compare 5-year outcomes of adolescent surgical patients after Roux-en-Y gastric bypass with those of conservatively treated adolescents and of adults undergoing Roux-en-Y gastric bypass, in the Adolescent Morbid Obesity Surgery (AMOS) study. We did a nationwide, prospective, non-randomised controlled study of adolescents (aged 13-18 years) with severe obesity undergoing Roux-en-Y gastric bypass at three specialised paediatric obesity treatment centres in Sweden. We compared clinical outcomes in adolescent surgical patients with those of matched adolescent controls undergoing conservative treatment and of adult controls undergoing Roux-en-Y gastric bypass. The primary outcome measure was change in BMI over 5 years. We used multilevel mixed-effect regression models to assess longitudinal changes. This trial is registered with ClinicalTrials.gov, number NCT00289705. Between April, 2006, and May, 2009, 100 adolescents were recruited to the study, of whom 81 underwent Roux-en-Y gastric bypass (mean age 16·5 years [SD 1·2], bodyweight 132·8 kg [22·1], and BMI 45·5 kg/m 2 [SD 6·1]). 80 matched adolescent controls and 81 matched adult controls were enrolled for comparison of outcomes. The change in bodyweight in adolescent surgical patients over 5 years was -36·8 kg (95% CI -40·9 to -32·8), resulting in a reduction in BMI of -13·1 kg/m 2 (95% CI -14·5 to -11·8), although weight loss less than 10% occurred in nine (11%). Mean BMI rose in adolescent controls (3·3 kg/m 2 , 95% CI 1·1-4·8) over the 5-year study period, whereas the BMI change in adult controls was similar to that in adolescent surgical patients (mean change -12·3 kg/m 2 , 95% CI -13·7 to -10·9). Comorbidities and

  1. Response of ammonia oxidizing archaea and bacteria to decabromodiphenyl ether and copper contamination in river sediments.

    PubMed

    Wang, Linqiong; Li, Yi; Niu, Lihua; Zhang, Wenlong; Zhang, Huanjun; Wang, Longfei; Wang, Peifang

    2018-01-01

    Ammonia oxidation plays a fundamental role in river nitrogen cycling ecosystems, which is normally governed by both ammonia oxidizing archaea (AOA) and ammonia oxidizing bacteria (AOB). Co-contamination of typical emerging pollutant Polybrominated diphenyl ethers (PBDEs) and heavy metal on AOA and AOB communities in river sediments remains unknown. In this study, multiple analytical tools, including high-throughput pyrosequencing and real-time quantitative PCR (qPCR), were used to reveal the ammonia monooxygenase (AMO) activity, subunit alpha (amoA) gene abundance, and community structures of AOA and AOB in river sediments. It was found that the inhibition of AMO activities was increased with the increase of decabromodiphenyl ether (BDE 209, 1-100 mg kg -1 ) and copper (Cu, 50-500 mg kg -1 ) concentrations. Moreover, the synergic effects of BDE 209 and Cu resulted in a higher AMO activity reduction than the individual pollutant BDE 209. The AOA amoA copy number declined by 75.9% and 83.2% and AOB amoA gene abundance declined 82.8% and 90.0% at 20 and 100 mg kg -1 BDE 209 with a 100 mg kg -1 Cu co-contamination, respectively. The pyrosequencing results showed that both AOB and AOA community structures were altered, with a higher change of AOB than that of AOA. The results demonstrated that the AOB microbial community may be better adapted to BDE 209 and Cu pollution, while AOA might possess a greater capacity for stress resistance. Our study provides a better understanding of the ecotoxicological effects of heavy metal and micropollutant combined exposure on AOA and AOB in river sediments. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Reconstructing the history of the Atlantic Multidecadal Oscillation using high-resolution Mg/Ca paleothermometry from a Cariaco Basin core

    NASA Astrophysics Data System (ADS)

    Wurtzel, J. B.; Black, D. E.; Rahman, S.; Thunell, R.; Peterson, L. C.; Tappa, E.

    2010-12-01

    Instrumental and proxy-reconstructions show the existence of an approximately 70-year periodicity in Atlantic sea surface temperature (SST), known as the Atlantic Multidecadal Oscillation (AMO). The AMO is correlated with circum-tropical Atlantic climate phenomena such as Sahel and Nordeste rainfall, and Atlantic hurricane patterns. Though it has been suggested that the AMO is controlled by thermohaline circulation, much debate exists as to whether the SST fluctuations are a result of anthropogenic forcing or a natural climate mode, or even if the AMO is a true oscillation at all. Our ability to address this issue has been limited by instrumental SST records that rarely extend back more than 50-100 years and proxy reconstructions that are mostly terrestrial-based. Additionally, the modern instrumental variability likely contains an anthropogenic component that is not easily distinguished from the natural background of the system. From a marine sediment core taken in the Cariaco Basin, we have developed a high-resolution SST reconstruction for the past ca. 1500 years using Mg/Ca paleothermometry on seasonally-representative foraminifera, with the most recent data calibrated to the instrumental record. Previous studies have shown Cariaco Basin Mg/Ca-SSTs to be well-correlated to the Caribbean Sea and much of the western tropical Atlantic, which allows us to create a record that can be used to determine pre-anthropogenic rates and ranges of SST variability and observe how they change over time. Averaging the seasonal temperatures derived from the two foraminiferal species over the instrumental period yields a strong correlation to the AMO index from A. D. 1880 through 1970 (r = 0.44, p<0.0001). Wavelet analysis of the proxy average annual SST data indicates that modern AMO variability is not a consistent feature through time, and may be a function of warm-period climate.

  3. Alexander Polonsky Global warming hiatus, ocean variability and regional climate change

    NASA Astrophysics Data System (ADS)

    Polonsky, A.

    2016-02-01

    This presentation generalizes the results concerning ocean variability, large-scale interdecadal ocean-atmosphere interaction in the Atlantic and Pacific Oceans and their impact on global and regional climate change carried out by the author and his colleagues for about 20 years. It is demonstrated once more that Atlantic Multidecadal Oscillation (AMO, which was early referred by the author as "interdecadal mode of North Atlantic Oscillation") is the crucial natural interdecadal climatic signal for the Atlantic-European and Mediterranean regions. It is characterized by amplitude which is the same order as human-induced centennial climate change and exceeds trend-like anthropogenic change at the decadal scale. Fast increasing of the global and Northern Hemisphere air temperature in the last 30 yrs of XX century (especially pronounced in the North Atlantic region and surrounded areas) is due to coincidence of human-induced positive trend and transition from the negative to the positive phase of AMO. AMO accounts for about 50% (60%) of the global (Northern Hemisphere) temperature trend in that period. Recent global warming hiatus is mostly the result of switch off the AMO phase. Typical AMO temporal scale is dictated by meridional overturning variability in the Atlantic Ocean and associated magnitude of meridional heat transport. Pacific Decadal Oscillation (PDO) is the other natural interdecadal signal which significantly impacts the global and regional climate variability. The rate of the ocean warming for different periods assessed separately for the upper mixed layer and deeper layers using data of oceanic re-analysis since 1959 confirms the principal role of the natural interdecadal oceanic modes (AMO and PDO) in observing climate change. At the same time a lack of deep-ocean long-term observing system restricts the accuracy of assessment of the heat redistribution in the World Ocean. I thanks to Pavel Sukhonos for help in the presentation preparing.

  4. Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

    PubMed Central

    Zhang, Li-Mei; Hu, Hang-Wei; Shen, Ju-Pei; He, Ji-Zheng

    2012-01-01

    Increasing evidence demonstrated the involvement of ammonia-oxidizing archaea (AOA) in the global nitrogen cycle, but the relative contributions of AOA and ammonia-oxidizing bacteria (AOB) to ammonia oxidation are still in debate. Previous studies suggest that AOA would be more adapted to ammonia-limited oligotrophic conditions, which seems to be favored by protonation of ammonia, turning into ammonium in low-pH environments. Here, we investigated the autotrophic nitrification activity of AOA and AOB in five strongly acidic soils (pH<4.50) during microcosm incubation for 30 days. Significantly positive correlations between nitrate concentration and amoA gene abundance of AOA, but not of AOB, were observed during the active nitrification. 13CO2-DNA-stable isotope probing results showed significant assimilation of 13C-labeled carbon source into the amoA gene of AOA, but not of AOB, in one of the selected soil samples. High levels of thaumarchaeal amoA gene abundance were observed during the active nitrification, coupled with increasing intensity of two denaturing gradient gel electrophoresis bands for specific thaumarchaeal community. Addition of the nitrification inhibitor dicyandiamide (DCD) completely inhibited the nitrification activity and CO2 fixation by AOA, accompanied by decreasing thaumarchaeal amoA gene abundance. Bacterial amoA gene abundance decreased in all microcosms irrespective of DCD addition, and mostly showed no correlation with nitrate concentrations. Phylogenetic analysis of thaumarchaeal amoA gene and 16S rRNA gene revealed active 13CO2-labeled AOA belonged to groups 1.1a-associated and 1.1b. Taken together, these results provided strong evidence that AOA have a more important role than AOB in autotrophic ammonia oxidation in strongly acidic soils. PMID:22134644

  5. Effects of chlorimuron-ethyl application with or without urea fertilization on soil ammonia-oxidizing bacteria and archaea.

    PubMed

    Tan, Huanbo; Xu, Mingkai; Li, Xinyu; Zhang, Huiwen; Zhang, Chenggang

    2013-09-15

    Chlorimuron-ethyl (CE) has been widely used in modern agriculture, but little is known regarding the influence of CE on ammonia-oxidizing bacteria (AOB) and archaea (AOA) populations in soils. In this study, microcosm incubation of aquic brown soil was conducted for 60 d. Associated changes in the population sizes of AOB and AOA in response to CE application with or without urea fertilization were examined via quantitative real-time PCR (qPCR) assays of the ammonia monooxygenase gene (amoA). The half-life of CE ranged from 11.80 d to 14.54 d in the tested soil. Compared to the untreated control, the application of CE alone had no strong effects on soil pH, and urea fertilization temporarily increased soil pH in the first 7 days. The abundance of the AOA amoA gene was greater than the abundance of the AOB amoA gene in all treatments, but both were significantly suppressed by CE application in a dose-dependent manner. Urea fertilization generally increased AOB and AOA amoA gene abundances, except that the AOA amoA gene level was slightly reduced at the early stage of the incubation period. AOB and AOA preferred different N levels for growth, with AOB only growing significantly at high NH4(+) levels and AOA growing substantially at low NH₄(+) levels. The stimulation effects of urea fertilization on AOA and AOB amoA gene abundances were strongly suppressed by the CE application. This study indicated that the CE application substantially suppressed soil nitrification via inhibiting the AOB and AOA population regardless of urea fertilization, which resulted in significant changes in the soil NH₄(+)-N and NO₃(-)-N levels. Furthermore, AOB and AOA inhabiting separate ecological niches with different NH₄(+) levels played various roles in N cycling. Copyright © 2013 Elsevier B.V. All rights reserved.

  6. A Favorable Prognosis

    ERIC Educational Resources Information Center

    Stewart, Pearl

    2006-01-01

    Dr. Keith Amos' undying support for his undergrad alma mater, Xavier University of Louisiana, took an unusual turn last year in the aftermath of Hurricane Katrina. Amos, who graduated from Harvard Medical School after earning his bachelor's from Xavier, also served as a mentor and advisor for Xavier students whose plans for applying to medical…

  7. SLAC All Access: Atomic, Molecular and Optical Science Instrument

    ScienceCinema

    Bozek, John

    2018-02-13

    John Bozek, a staff scientist at SLAC's Linac Coherent Light Source (LCLS) X-ray laser who manages the LCLS Soft X-ray Department, takes us behind the scenes at the Atomic, Molecular and Optical Science (AMO) instrument, the first of six experimental stations now operating at LCLS. Samples used in AMO experiments include atoms, molecules, clusters, and nanoscale objects such as protein crystals or viruses. Science performed at AMO includes fundamental studies of light-matter interactions in the extreme X-ray intensity of the LCLS pules, time-resolved studies of increasingly charged states of atoms and molecules, X-ray diffraction imaging of nanocrystals, and single-shot imaging of a variety of objects.

  8. Baseflow response to climate variability induced droughts in the Apalachicola-Chattahoochee-Flint River Basin, U.S.A.

    NASA Astrophysics Data System (ADS)

    Singh, Sarmistha; Srivastava, Puneet; Abebe, Ash; Mitra, Subhasis

    2015-09-01

    Droughts have been a major factor leading to the Tri-State Water Wars in the southeastern United States. One of the primary issues related to the conflict is the reduction in baseflow levels in the Flint River during droughts. This affects the availability of freshwater resources to support the endangered mussel species in the Flint and Apalachicola Rivers and threatens the shellfish industry in the Apalachicola Bay. Study of large-scale climate phenomena as well as the interactions of interannual with decadal and multidecadal oceanic-atmospheric phenomena can provide valuable information regarding regional climatic conditions such as droughts and their impact on water resources. This study was conducted to quantify the impacts of climate variability cycles on baseflow levels in the Flint River. The individual and coupled impacts of the El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), Atlantic Multidecadal Oscillation (AMO), and North Atlantic Oscillation (NAO) on baseflow were quantified. The non-parametric Joint Rank Fit (JRFit) procedure was used to provide a robust test of the significance of interactions between the phases of ENSO-PDO, ENSO-AMO and ENSO-NAO baseflows. Simple-main effect comparisons were also performed using the JRFit model to estimate significant difference between the positive and negative phase baseflows of PDO, AMO and NAO associated with El Niño or La Niña phases. The results indicate that the phases of ENSO, AMO and NAO significantly affect baseflows in the Flint River. Interaction tests showed that the PDO and AMO phases modulate ENSO phase baseflows. La Niña associated with positive phases of PDO and AMO resulted in greater decrease in baseflow levels of approximately 28% and 33%, respectively. However, La Niña associated with negative phase of AMO showed above normal baseflows. The results illustrate the importance of coupled analyses of climate variability by providing a better understanding of the severity

  9. Atlantic Multidecadal Oscillation Modulates the Impacts of Arctic Sea Ice Decline

    NASA Astrophysics Data System (ADS)

    Li, Fei; Orsolini, Yvan J.; Wang, Huijun; Gao, Yongqi; He, Shengping

    2018-03-01

    The Arctic sea ice cover has been rapidly declining in the last two decades, concurrent with a shift in the Atlantic Multidecadal Oscillation (AMO) to its warm phase around 1996/1997. Here we use both observations and model simulations to investigate the modulation of the atmospheric impacts of the decreased sea ice cover in the Atlantic sector of the Arctic (AASIC) by the AMO. We find that the AASIC loss during a cold AMO phase induces increased Ural blocking activity, a southeastward-extended snowpack, and a cold continent anomaly over Eurasia in December through northerly cold air advection and moisture transport from the Arctic. The increased Ural blocking activity and more extended Eurasian snowpack strengthen the upward propagation of planetary waves over the Siberian-Pacific sector in the lower stratosphere and hence lead to a weakened stratospheric polar vortex and a negative Arctic Oscillation (AO) phase at the surface in February. However, corresponding to the AASIC loss during a warm AMO phase, one finds more widespread warming over the Arctic and a reduced snowpack over Northern Eurasia in December. The stratosphere-troposphere coupling is suppressed in early winter and no negative AO anomaly is found in February. We suggest that the cold AMO phase is important to regulate the atmospheric response to AASIC decline, and our study provides insight to the ongoing debate on the connection between the Arctic sea ice and the AO.

  10. Niche specificity of ammonia-oxidizing archaeal and bacterial communities in a freshwater wetland receiving municipal wastewater in Daqing, Northeast China.

    PubMed

    Lee, Kwok-Ho; Wang, Yong-Feng; Li, Hui; Gu, Ji-Dong

    2014-12-01

    Ecophysiological differences between ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) enable them to adapt to different niches in complex freshwater wetland ecosystems. The community characters of AOA and AOB in the different niches in a freshwater wetland receiving municipal wastewater, as well as the physicochemical parameters of sediment/soil samples, were investigated in this study. AOA community structures varied and separated from each other among four different niches. Wetland vegetation including aquatic macrophytes and terrestrial plants affected the AOA community composition but less for AOB, whereas sediment depths might contribute to the AOB community shift. The diversity of AOA communities was higher than that of AOB across all four niches. Archaeal and bacterial amoA genes (encoding for the alpha-subunit of ammonia monooxygenases) were most diverse in the dry-land niche, indicating O2 availability might favor ammonia oxidation. The majority of AOA amoA sequences belonged to the Soil/sediment Cluster B in the freshwater wetland ecosystems, while the dominant AOB amoA sequences were affiliated with Nitrosospira-like cluster. In the Nitrosospira-like cluster, AOB amoA gene sequences affiliated with the uncultured ammonia-oxidizing beta-proteobacteria constituted the largest portion (99%). Moreover, independent methods for phylogenetic tree analysis supported high parsimony bootstrap values. As a consequence, it is proposed that Nitrosospira-like amoA gene sequences recovered in this study represent a potentially novel cluster, grouping with the sequences from Gulf of Mexico deposited in the public databases.

  11. Substance abuse may hasten motor onset of Huntington disease: Evaluating the Enroll-HD database.

    PubMed

    Schultz, Jordan L; Kamholz, John A; Moser, David J; Feely, Shawna M E; Paulsen, Jane S; Nopoulos, Peg C

    2017-02-28

    To investigate the relationship between substances of abuse and age at motor onset (AMO) in patients with Huntington disease (HD) in a large and diverse patient population. This was a retrospective, observational study of the Enroll-HD database. Participants were determined to belong to 1 of 3 substance abuse groups: (1) tobacco abusers, (2) alcohol abusers, and (3) drug abusers. A group of participants who had never abused substances served as a control group. The average AMO of patients in the substance abuse groups was compared to the control group. The number of CAG repeats was used as a covariate in all analyses. The average difference in AMOs of participants in the tobacco (n = 566), alcohol (n = 374), and drug abuse groups (n = 217) compared to the control group (n = 692) were 2.3 ( F 1, 1,258 = 33.8, p < 0.0001), 1.0 ( F 1, 1,066 = 4.2, p = 0.04), and 3.3 ( F 1, 909 = 29.7, p < 0.0001) years earlier, respectively. In all substance abuse groups, the AMO was lowered to a greater degree in female participants than it was in male participants. Substances of abuse have a strong effect on the AMO in patients with HD. These effects seem to be amplified in women with HD compared to men. These results may provide a safe intervention capable of adding disease-free years to patients with HD. © 2017 American Academy of Neurology.

  12. The influence of sublethal deposits of agricultural mineral oil on the functional and numerical responses of Phytoseiulus persimilis (Acari: Phytoseiidae) to its prey, Tetranychus urticae (Acari: Tetranychidae).

    PubMed

    Xue, Yingen; Meats, Alan; Beattie, G Andrew C; Spooner-Hart, Robert; Herron, Grant A

    2009-08-01

    Occasional pesticide application in integrated pest management to at least part of a crop requires that any biological control agents must re-invade previously sprayed areas in order that resurgent pests can be constrained. The ability of the phytoseiid predatory mite Phytoseiulus persimilis to feed on adult two-spotted spider mite (TSSM) Tetranychus urticae on excised leaf discs in both control conditions and in a treatment with a sub lethal residue of agricultural mineral oil (AMO) was assessed. The predator exhibited a Type II functional response with the asymptote significantly higher in the AMO conditions due to the fact that the prey grew slower and reached a smaller size in this treatment. In terms of prey volume eaten, the satiation level of the predator was unchanged by the AMO deposits. The numbers of eggs produced by adult P. persimilis females at densities of 4, 8 and 16 TSSM adult females/disc in the control were significantly higher than those in the AMO treatment, but were similar for the higher density levels, 32 and 64 prey per disc. Thus the functional response in terms of volume of prey eaten explained the numerical response in terms of predator eggs produced. The presence of AMO deposits when the prey were at high density had no effect on predator efficiency (volume eaten) but resulted in a lower intake than that in control conditions when there was a greater distance between prey.

  13. AlGaAs top solar cell for mechanical attachment in a multi-junction tandem concentrator solar cell stack

    NASA Technical Reports Server (NTRS)

    Dinetta, L. C.; Hannon, M. H.; Mcneely, J. B.; Barnett, A. M.

    1991-01-01

    The AstroPower self-supporting, transparent AlGaAs top solar cell can be stacked upon any well-developed bottom solar cell for improved system performance. This is an approach to improve the performance and scale of space photovoltaic power systems. Mechanically stacked tandem solar cell concentrator systems based on the AlGaAs top concentrator solar cell can provide near term efficiencies of 36 percent (AMO, 100x). Possible tandem stack efficiencies greater than 38 percent (100x, AMO) are feasible with a careful selection of materials. In a three solar cell stack, system efficiencies exceed 41 percent (100x, AMO). These device results demonstrate a practical solution for a state-of-the-art top solar cell for attachment to an existing, well-developed solar cell.

  14. Comammox in drinking water systems.

    PubMed

    Wang, Yulin; Ma, Liping; Mao, Yanping; Jiang, Xiaotao; Xia, Yu; Yu, Ke; Li, Bing; Zhang, Tong

    2017-06-01

    The discovery of complete ammonia oxidizer (comammox) has fundamentally upended our perception of the global nitrogen cycle. Here, we reported four metagenome assembled genomes (MAGs) of comammox Nitrospira that were retrieved from metagenome datasets of tap water in Singapore (SG-bin1 and SG-bin2), Hainan province, China (HN-bin3) and Stanford, CA, USA (ST-bin4). Genes of phylogenetically distinct ammonia monooxygenase subunit A (amoA) and hydroxylamine dehydrogenase (hao) were identified in these four MAGs. Phylogenetic analysis based on ribosomal proteins, AmoA, hao and nitrite oxidoreductase (subunits nxrA and nxrB) sequences indicated their close relationships with published comammox Nitrospira. Canonical ammonia-oxidizing microbes (AOM) were also identified in the three tap water samples, ammonia-oxidizing bacteria (AOB) in Singapore's and Stanford's samples and ammonia-oxidizing archaea (AOA) in Hainan's sample. The comammox amoA-like sequences were also detected from some other drinking water systems, and even outnumbered the AOA and AOB amoA-like sequences. The findings of MAGs and the occurrences of AOM in different drinking water systems provided a significant clue that comammox are widely distributed in drinking water systems. Copyright © 2017 Elsevier Ltd. All rights reserved.

  15. Development of a high efficiency thin silicon solar cell

    NASA Technical Reports Server (NTRS)

    Storti, G.; Culik, J.; Wrigley, C.

    1980-01-01

    Significant improvements in open-circuit voltage and conversion efficiency, even on relatively high bulk resistivity silicon, were achieved by using a screen-printed aluminum paste back surface field. A 4 sq cm 50 micron m thick cell was fabricated from textured 10 omega-cm silicon which had an open-circuit voltage of 595 mV and AMO conversion efficiency at 25 C of 14.3%. The best 4 sq cm 50 micron thick cell (2 omega-cm silicon) produced had an open-circuit voltage of 607 mV and an AMO conversion efficiency of 15%. Processing modifications are described which resulted in better front contact integrity and reduced breakage. These modifications were utilized in the thin cell pilot line to fabricate 4 sq cm cells with an average AMO conversion efficiency at 25 C of better than 12.5% and with lot yields as great as 51% of starts; a production rate of 10,000 cells per month was demonstrated. A pilot line was operated which produced large area (25 cm) ultra-thin cells with an average AMO conversion efficiency at 25 deg of better than 11.5% and a lot yield as high as 17%.

  16. The influence of land use on the abundance and diversity of ammonia oxidizers.

    PubMed

    Zhao, Dayong; Luo, Juan; Wang, Jianqun; Huang, Rui; Guo, Kun; Li, Yi; Wu, Qinglong L

    2015-02-01

    Nitrification plays a significant role in soil nitrogen cycling, a process in which the first step can be catalyzed by ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). In this study, six soil samples with distinct land-use regimes (forestland soil, paddy soil, wheat-planted soil, fruit-planted soil, grassland soil, and rape-planted soil) were collected from Chuzhou city in the Anhui province to elucidate the effects of land use on the abundance and diversity of AOA and AOB. The abundance of the archaeal amoA gene ranged from 2.12 × 10(4) copies per gram of dry soil to 2.57 × 10(5) copies per gram of dry soil, while the abundance of the bacterial amoA gene ranged from 5.58 × 10(4) copies per gram of dry soil to 1.59 × 10(8) copies per gram of dry soil. The grassland and the rape-planted soil samples maintained the highest abundance of the bacterial and archaeal amoA genes, respectively. The abundance of the archaeal amoA gene was positively correlated with the pH (P < 0.05). The ammonia concentrations exhibited a significantly positive relation with the abundance of the bacterial amoA gene (P < 0.01) and the number of OTUs of AOB (P < 0.05). The community composition of AOB was more sensitive to the land-use regimes than that of AOA. The data obtained in this study may be useful to better understand the nitrification process in soils with different land-use regimes.

  17. Distinct responses in ammonia-oxidizing archaea and bacteria after addition of biosolids to an agricultural soil.

    PubMed

    Kelly, John J; Policht, Katherine; Grancharova, Tanya; Hundal, Lakhwinder S

    2011-09-01

    The recently discovered ammonia-oxidizing archaea (AOA) have been suggested as contributors to the first step of nitrification in terrestrial ecosystems, a role that was previously assigned exclusively to ammonia-oxidizing bacteria (AOB). The current study assessed the effects of agricultural management, specifically amendment of soil with biosolids or synthetic fertilizer, on nitrification rates and copy numbers of archaeal and bacterial ammonia monooxygenase (amoA) genes. Anaerobically digested biosolids or synthetic fertilizer was applied annually for three consecutive years to field plots used for corn production. Biosolids were applied at two loading rates, a typical agronomic rate (27 Mg hectare(-1) year(-1)) and double the agronomic rate (54 Mg hectare(-1) year(-1)), while synthetic fertilizer was applied at an agronomic rate typical for the region (291 kg N hectare(-1) year(-1)). Both biosolids amendments and synthetic fertilizer increased soil N and corn yield, but only the biosolids amendments resulted in significant increases in nitrification rates and increases in the copy numbers of archaeal and bacterial amoA genes. In addition, only archaeal amoA gene copy numbers increased in response to biosolids applied at the typical agronomic rate and showed a significant correlation with nitrification rates. Finally, copy numbers of archaeal amoA genes were significantly higher than copy numbers of bacterial amoA genes for all treatments. These results implicate AOA as being primarily responsible for the increased nitrification observed in an agricultural soil amended with biosolids. These results also support the hypothesis that physiological differences between AOA and AOB may enable them to occupy distinct ecological niches.

  18. Standardized UXO Technology Demonstration Site Blind Grid Scoring Record No. 764

    DTIC Science & Technology

    2006-04-01

    Attainable accuracy of depth (z) ± 0.3 meter Detection performance for ferrous and nonferrous metals : will detect ammunition components 20-mm...ASSOCIATES, INC. 6832 OLD DOMINION DRIVE MCLEAN, VA 22101 TECHNOLOGY TYPE/PLATFORM: MULTI CHANNEL DETECTOR SYSTEM (AMOS)/TOWED PREPARED BY: U.S...Multi Channel Detector System (AMOS)/Towed, MEC 18. NUMBER OF PAGES 19a. NAME OF RESPONSIBLE PERSON a. REPORT Unclassified b. ABSTRACT

  19. Performance Evaluation of a Routing Protocol in Wireless Sensor Network

    DTIC Science & Technology

    2005-12-01

    OF A ROUTING PROTOCOL IN WIRELESS SENSOR NETWORKS by Cheng Kiat Amos, Teo December 2005 Thesis Advisors: Gurminder Singh John C...Evaluation of a Routing Protocol in Wireless Sensor Network 6. AUTHOR(S) Cheng Kiat Amos, Teo 5. FUNDING NUMBERS 7. PERFORMING ORGANIZATION NAME(S...need to be strategically positioned and have topologies engineered. As such, recent research into wireless sensor networks has attracted great

  20. Atlantic multi-decadal oscillation influence on weather regimes over Europe and the Mediterranean in spring and summer

    NASA Astrophysics Data System (ADS)

    Zampieri, M.; Toreti, A.; Schindler, A.; Scoccimarro, E.; Gualdi, S.

    2017-04-01

    We analyze the influence of the Atlantic sea surface temperature multi-decadal variability on the day-by-day sequence of large-scale atmospheric circulation patterns (i.e. the ;weather regimes;) over the Euro-Atlantic region. In particular, we examine of occurrence of weather regimes from 1871 to present. This analysis is conducted by applying a clustering technique on the daily mean sea level pressure field provided by the 20th Century Reanalysis project, which was successfully applied in other studies focused on the Atlantic Multi-decadal Oscillation (AMO). In spring and summer, results show significant changes in the frequencies of certain weather regimes associated with the phase shifts of the AMO. These changes are consistent with the seasonal surface pressure, precipitation, and temperature anomalies associated with the AMO shifts in Europe.

  1. Laboratory instrumentation and techniques for characterizing multi-junction solar cells for space applications

    NASA Technical Reports Server (NTRS)

    Woodyard, James R.

    1995-01-01

    Multi-junction solar cells are attractive for space applications because they can be designed to convert a larger fraction of AMO into electrical power at a lower cost than single-junction cells. The performance of multi-junction cells is much more sensitive to the spectral irradiance of the illuminating source than single-junction cells. The design of high efficiency multi-junction cells for space applications requires matching the optoelectronic properties of the junctions to AMO spectral irradiance. Unlike single-junction cells, it is not possible to carry out quantum efficiency measurements using only a monochromatic probe beam and determining the cell short-circuit current assuming linearity of the quantum efficiency. Additionally, current-voltage characteristics can not be calculated from measurements under non-AMO light sources using spectral-correction methods. There are reports in the literature on characterizing the performance of multi junction cells by measuring and convoluting the quantum efficiency of each junction with the spectral irradiance; the technique is of limited value for the characterization of cell performance under AMO power-generating conditions. We report the results of research to develop instrumentation and techniques for characterizing multi junction solar cells for space . An integrated system is described which consists of a standard lamp, spectral radiometer, dual-source solar simulator, and personal computer based current-voltage and quantum efficiency equipment. The spectral radiometer is calibrated regularly using the tungsten-halogen standard lamp which has a calibration based on NIST scales. The solar simulator produces the light bias beam for current-voltage and cell quantum efficiency measurements. The calibrated spectral radiometer is used to 'fit' the spectral irradiance of the dual-source solar simulator to WRL AMO data. The quantum efficiency apparatus includes a monochromatic probe beam for measuring the absolute cell

  2. M855A1 Enhanced Performance Round (EPR) Media Day

    DTIC Science & Technology

    2011-05-04

    Distribution is unlimited. Other requests shall be referred to the Office of the Project Manager for Maneuver Ammunition Systems, ATTN: SFAE-AMO-MAS- SETI ... SETI ,Picatinny,NJ,07806-5000 8. PERFORMING ORGANIZATION REPORT NUMBER 9. SPONSORING/MONITORING AGENCY NAME(S) AND ADDRESS(ES) 10. SPONSOR/MONITOR’S...the Project Manager for Maneuver Ammunition Systems, ATTN: SFAE- AMO-MAS- SETI , Picatinny, NJ Distribution Statement A: Approved for Public Release

  3. Combined Effect of El Nino Southern Oscillation and Atlantic Multidecadal Oscillation on Lake Chad Level Variability Region

    NASA Technical Reports Server (NTRS)

    Okonkwo, Churchill; Demoz, Belay; Sakai, Ricardo; Ichoku, Charles; Anarado, Chigozie; Adegoke, Jimmy; Amadou, Angelina; Abdullahi, Sanusu Imran

    2015-01-01

    In this study, the combined effect of the Atlantic Multidecadal Oscillation (AMO) and El Niño Southern Oscillation (ENSO) on the Lake Chad (LC) level variability is explored. Our results show that the lake level at the Bol monitoring station has a statistically significant correlation with precipitation (R2 = 0.6, at the 99.5% confidence level). The period between the late 1960s and early 1970s marked a turning point in the response of the regional rainfall to climatic drivers, thereby severely affecting the LC level. Our results also suggest that the negative impact of the cold phase of AMO on Sahel precipitation masks and supersedes the positive effect of La Niña in the early the 1970s. The drop in the size of LC level from 282.5 m in the early 1960s to about 278.1 m in 1983/1984 was the largest to occur within the period of study (1900-2010) and coincides with the combined cold phase of AMO and strong El Niño phase of ENSO. Further analyses show that the current warm phase of AMO and increasing La Niña episodes appear to be playing a major role in the increased precipitation in the Sahel region. The LC level is responding to this increase in precipitation by a gradual recovery, though it is still below the levels of the 1960s. This understanding of the AMO-ENSO-rainfall-LC level association will help in forecasting the impacts of similar combined episodes in the future. These findings also have implications for long-term water resources management in the LC region.

  4. Statistical link between external climate forcings and modes of ocean variability

    NASA Astrophysics Data System (ADS)

    Malik, Abdul; Brönnimann, Stefan; Perona, Paolo

    2017-07-01

    In this study we investigate statistical link between external climate forcings and modes of ocean variability on inter-annual (3-year) to centennial (100-year) timescales using de-trended semi-partial-cross-correlation analysis technique. To investigate this link we employ observations (AD 1854-1999), climate proxies (AD 1600-1999), and coupled Atmosphere-Ocean-Chemistry Climate Model simulations with SOCOL-MPIOM (AD 1600-1999). We find robust statistical evidence that Atlantic multi-decadal oscillation (AMO) has intrinsic positive correlation with solar activity in all datasets employed. The strength of the relationship between AMO and solar activity is modulated by volcanic eruptions and complex interaction among modes of ocean variability. The observational dataset reveals that El Niño southern oscillation (ENSO) has statistically significant negative intrinsic correlation with solar activity on decadal to multi-decadal timescales (16-27-year) whereas there is no evidence of a link on a typical ENSO timescale (2-7-year). In the observational dataset, the volcanic eruptions do not have a link with AMO on a typical AMO timescale (55-80-year) however the long-term datasets (proxies and SOCOL-MPIOM output) show that volcanic eruptions have intrinsic negative correlation with AMO on inter-annual to multi-decadal timescales. The Pacific decadal oscillation has no link with solar activity, however, it has positive intrinsic correlation with volcanic eruptions on multi-decadal timescales (47-54-year) in reconstruction and decadal to multi-decadal timescales (16-32-year) in climate model simulations. We also find evidence of a link between volcanic eruptions and ENSO, however, the sign of relationship is not consistent between observations/proxies and climate model simulations.

  5. Distinct Responses in Ammonia-Oxidizing Archaea and Bacteria after Addition of Biosolids to an Agricultural Soil▿

    PubMed Central

    Kelly, John J.; Policht, Katherine; Grancharova, Tanya; Hundal, Lakhwinder S.

    2011-01-01

    The recently discovered ammonia-oxidizing archaea (AOA) have been suggested as contributors to the first step of nitrification in terrestrial ecosystems, a role that was previously assigned exclusively to ammonia-oxidizing bacteria (AOB). The current study assessed the effects of agricultural management, specifically amendment of soil with biosolids or synthetic fertilizer, on nitrification rates and copy numbers of archaeal and bacterial ammonia monooxygenase (amoA) genes. Anaerobically digested biosolids or synthetic fertilizer was applied annually for three consecutive years to field plots used for corn production. Biosolids were applied at two loading rates, a typical agronomic rate (27 Mg hectare−1 year−1) and double the agronomic rate (54 Mg hectare−1 year−1), while synthetic fertilizer was applied at an agronomic rate typical for the region (291 kg N hectare−1 year−1). Both biosolids amendments and synthetic fertilizer increased soil N and corn yield, but only the biosolids amendments resulted in significant increases in nitrification rates and increases in the copy numbers of archaeal and bacterial amoA genes. In addition, only archaeal amoA gene copy numbers increased in response to biosolids applied at the typical agronomic rate and showed a significant correlation with nitrification rates. Finally, copy numbers of archaeal amoA genes were significantly higher than copy numbers of bacterial amoA genes for all treatments. These results implicate AOA as being primarily responsible for the increased nitrification observed in an agricultural soil amended with biosolids. These results also support the hypothesis that physiological differences between AOA and AOB may enable them to occupy distinct ecological niches. PMID:21803892

  6. Community structure and function of planktonic Crenarchaeota: changes with depth in the South China Sea.

    PubMed

    Hu, Anyi; Jiao, Nianzhi; Zhang, Chuanlun L

    2011-10-01

    Marine Crenarchaeota represent a widespread and abundant microbial group in marine ecosystems. Here, we investigated the abundance, diversity, and distribution of planktonic Crenarchaeota in the epi-, meso-, and bathypelagic zones at three stations in the South China Sea (SCS) by analysis of crenarchaeal 16S rRNA gene, ammonia monooxygenase gene amoA involved in ammonia oxidation, and biotin carboxylase gene accA putatively involved in archaeal CO(2) fixation. Quantitative PCR analyses indicated that crenarchaeal amoA and accA gene abundances varied similarly with archaeal and crenarchaeal 16S rRNA gene abundances at all stations, except that crenarchaeal accA genes were almost absent in the epipelagic zone. Ratios of the crenarchaeal amoA gene to 16S rRNA gene abundances decreased ~2.6 times from the epi- to bathypelagic zones, whereas the ratios of crenarchaeal accA gene to marine group I crenarchaeal 16S rRNA gene or to crenarchaeal amoA gene abundances increased with depth, suggesting that the metabolism of Crenarchaeota may change from the epi- to meso- or bathypelagic zones. Denaturing gradient gel electrophoresis profiling of the 16S rRNA genes revealed depth partitioning in archaeal community structures. Clone libraries of crenarchaeal amoA and accA genes showed two clusters: the "shallow" cluster was exclusively derived from epipelagic water and the "deep" cluster was from meso- and/or bathypelagic waters, suggesting that niche partitioning may take place between the shallow and deep marine Crenarchaeota. Overall, our results show strong depth partitioning of crenarchaeal populations in the SCS and suggest a shift in their community structure and ecological function with increasing depth.

  7. Synthesis of highly efficient flame retardant polypropylene nanocomposites with surfactant intercalated layered double hydroxides.

    PubMed

    Qiu, Lei; Gao, Yanshan; Zhang, Cheng; Yan, Qinghua; O'Hare, Dermot; Wang, Qiang

    2018-02-27

    The thermal and flame retardant performances of polypropylene (PP) nanocomposites with sodium dodecyl sulfate (DDS) and stearic acid intercalated layered double hydroxides (DDS-LDHs and stearic-LDHs) were investigated in this study. The DDS- and stearic-LDHs were treated using the aqueous miscible organic solvent treatment (AMOST) method to give highly dispersed platelets in PP composites. The incorporation of AMO-DDS- and stearic-LDHs improved the thermal stability and flame retardancy of the PP matrix significantly. The T 0.5 (temperature at 50% weight loss) of PP/AMO-stearic-LDH (20 wt%) nanocomposites dramatically increased by 80 °C compared to that of neat PP. The flame retardant performance was dependent on both surfactants and the loading of LDHs. The AMO-stearic-LDHs showed better flame retardant properties than the AMO-DDS-LDHs, especially when the LDH loading was higher than ca. 7 wt%. In addition, stearic-LDHs with different solvothermal times including 5, 10, 24 and 72 h were studied. It was found that the nanocomposites with LDHs solvothermally treated for 10 h showed the best thermal stability. The PP/stearic-LDH (24 h) nanocomposites with 20 wt% LDH loading possessed a better flame retardant performance, with PHRR reduction reaching 70%.

  8. Differences of Longitudinal Chromatic Aberration (LCA) between Eyes with Intraocular Lenses from Different Manufacturers.

    PubMed

    Nakajima, Masashi; Hiraoka, Takahiro; Yamamoto, Toshiya; Takagi, Seiu; Hirohara, Yoko; Oshika, Tetsuro; Mihashi, Toshifumi

    2016-01-01

    Several researchers have studied the longitudinal chromatic aberration (LCA) of eyes implanted with an intraocular lens (IOL). We investigated the LCA of eyes implanted with yellow-colored IOLs from three different manufacturers: Alcon Inc., HOYA Corp., and AMO Inc. The number of subjects was 11, 16, and 16, respectively. The LCA of eyes implanted with SN60WF and SN60AT (Alcon Inc.), and with XY-1 (HOYA Corp.), was the same as that of phakic eyes. The LCA of eyes with ZCB00V (AMO Inc.) was smaller than that of phakic eyes. The LCA of eyes implanted with Alcon's and HOYA's IOLs, but not the LCA of eyes implanted with AMO's IOLs, was positively correlated with the powers of the IOLs. We also performed simulations to verify the impacts of LCA on visual performance for 4-mm pupil diameter; the simulations were a polychromatic modulation transfer function (MTF) and a visual Strehl ratio computed on the basis of an optical transfer function (VSOTF). We concluded that the differences between the LCA of different manufacturers do not affect visual performances when some extent of higher-order aberration (HOA) exists. The smaller HOA of AMO IOLs may enhance visual performance.

  9. Connecting Atlantic temperature variability and biological cycling in two earth system models

    NASA Astrophysics Data System (ADS)

    Gnanadesikan, Anand; Dunne, John P.; Msadek, Rym

    2014-05-01

    Connections between the interdecadal variability in North Atlantic temperatures and biological cycling have been widely hypothesized. However, it is unclear whether such connections are due to small changes in basin-averaged temperatures indicated by the Atlantic Multidecadal Oscillation (AMO) Index, or whether both biological cycling and the AMO index are causally linked to changes in the Atlantic Meridional Overturning Circulation (AMOC). We examine interdecadal variability in the annual and month-by-month diatom biomass in two Earth System Models with the same formulations of atmospheric, land, sea ice and ocean biogeochemical dynamics but different formulations of ocean physics and thus different AMOC structures and variability. In the isopycnal-layered ESM2G, strong interdecadal changes in surface salinity associated with changes in AMOC produce spatially heterogeneous variability in convection, nutrient supply and thus diatom biomass. These changes also produce changes in ice cover, shortwave absorption and temperature and hence the AMO Index. Off West Greenland, these changes are consistent with observed changes in fisheries and support climate as a causal driver. In the level-coordinate ESM2M, nutrient supply is much higher and interdecadal changes in diatom biomass are much smaller in amplitude and not strongly linked to the AMO index.

  10. Evaluation of revised polymerase chain reaction primers for more inclusive quantification of ammonia-oxidizing archaea and bacteria.

    PubMed

    Meinhardt, Kelley A; Bertagnolli, Anthony; Pannu, Manmeet W; Strand, Stuart E; Brown, Sally L; Stahl, David A

    2015-04-01

    Ammonia-oxidizing archaea (AOA) and bacteria (AOB) fill key roles in the nitrogen cycle. Thus, well-vetted methods for characterizing their distribution are essential for framing studies of their significance in natural and managed systems. Quantification of the gene coding for one subunit of the ammonia monooxygenase (amoA) by polymerase chain reaction is frequently employed to enumerate the two groups. However, variable amplification of sequence variants comprising this conserved genetic marker for ammonia oxidizers potentially compromises within- and between-system comparisons. We compared the performance of newly designed non-degenerate quantitative polymerase chain reaction primer sets to existing primer sets commonly used to quantify the amoA of AOA and AOB using a collection of plasmids and soil DNA samples. The new AOA primer set provided improved quantification of model mixtures of different amoA sequence variants and increased detection of amoA in DNA recovered from soils. Although both primer sets for the AOB provided similar results for many comparisons, the new primers demonstrated increased detection in environmental application. Thus, the new primer sets should provide a useful complement to primers now commonly used to characterize the environmental distribution of AOA and AOB. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

  11. Amplified summer warming in Europe-West Asia and Northeast Asia after the mid-1990s

    NASA Astrophysics Data System (ADS)

    Hong, Xiaowei; Lu, Riyu; Li, Shuanglin

    2017-09-01

    Regional temperature changes are a crucial factor in affecting agriculture, ecosystems and societies, which depend greatly on local temperatures. We identify a nonuniform warming pattern in summer around the mid-1990s over the Eurasian continent, with a predominant amplified warming over Europe-West Asia and Northeast Asia but much weaker warming over Central Asia. It is found that the nonuniform warming concurs with both the phase shift of the Atlantic Multi-decadal Oscillation (AMO) and the decadal change in the Silk Road Pattern (SRP), which is an upper-tropospheric teleconnection pattern over the Eurasian continent during summer. We suggest that the AMO may modulate the decadal change in SRP and then induce the zonal asymmetry in temperature changes. Our results have important implications for decadal prediction of regional warming pattern in Eurasia based on the predictable AMO.

  12. Associations of multi-decadal sea-surface temperature variability with US drought

    USGS Publications Warehouse

    McCabe, G.J.; Betancourt, J.L.; Gray, S.T.; Palecki, M.A.; Hidalgo, H.G.

    2008-01-01

    Recent research suggests a link between drought occurrence in the conterminous United States (US) and sea surface temperature (SST) variability in both the tropical Pacific and North Atlantic Oceans on decadal to multidecadal (D2M) time scales. Results show that the Atlantic Multidecadal Oscillation (AMO) is the most consistent indicator of D2M drought variability in the conterminous US during the 20th century, but during the 19th century the tropical Pacific is a more consistent indicator of D2 M drought. The interaction between El Nin??o-Southern Oscillation (ENSO) and the AMO explain a large part of the D2M drought variability in the conterminous US. More modeling studies are needed to reveal possible mechanisms linking low-frequency ENSO variability and the AMO with drought in the conterminous US. ?? 2007 Elsevier Ltd and INQUA.

  13. Standardized UXO Technology Demonstration Site, Open Field Scoring Record No. 893

    DTIC Science & Technology

    2008-07-01

    EM) AMOS metal detector is a linear multichannel sensor array consisting of a 2-meter-wide transmitter coil and 16 receiver coils, mounted on a...ferrous and nonferrous metals : Will detect ammunition components 20-mm caliber and over at depths of up to 0.4 meter and ammunition components 100...robust, all-terrain trailer (fig. 1). b. The AMOS detector unit consists of the following main components: (1) Lower sensor level (dimensions

  14. Standardized UXO Technology Demonstration Site, Blind Grid Scoring Record No. 919

    DTIC Science & Technology

    2008-07-01

    provided by demonstrator) a. The core component of the electromagnetic (EM) AMOS metal detector is a linear multichannel sensor array consisting of a...Attainable accuracy of depth (z) +0.3 m h. Detection performance for ferrous and nonferrous metals : Will detect ammunition components 20-mm caliber...2-meter-wide transmitter coil and 16 receiver coils, mounted on a robust, all-terrain trailer (fig. 1). b. The AMOS detector unit consists of the

  15. Premature Extinction of the Weather Observer: How Much Risk is the Air Force Assuming

    DTIC Science & Technology

    2015-12-01

    is impacted in some way by the weather and the forecast. DOD assets are exposed to haz- ardous weather conditions each year, the effects of which...discussion of ASOS accuracy follows and is accompanied by an assessment of sur- face weather observations’ impacts to operations as a function of time as well...from some back-up techniques. This section details current knowledge of AMOS and cor- responding impacts of AMOS employment. Current Fielded Systems

  16. The role of Atlantic Multi-decadal Oscillation in the global mean temperature variability

    DOE PAGES

    Chylek, Petr; Klett, James D.; Dubey, Manvendra K.; ...

    2016-11-01

    We simulated the global mean 1900–2015 warming by 42 Coupled Models Inter-comparison Project, phase 5 (CMIP5) climate models varies between 0.58 and 1.70 °C. The observed warming according to the NASA GISS temperature analysis is 0.95 °C with a 1200 km smoothing radius, or 0.86 °C with a 250 km smoothing radius. The projection of the future 2015–2100 global warming under a moderate increase of anthropogenic radiative forcing (RCP4.5 scenario) by individual models is between 0.7 and 2.3 °C. The CMIP5 climate models agree that the future climate will be warmer; however, there is little consensus as to how largemore » the warming will be (reflected by an uncertainty of over a factor of three). Moreover, a parsimonious statistical regression model with just three explanatory variables [anthropogenic radiative forcing due to greenhouse gases and aerosols (GHGA), solar variability, and the Atlantic Multi-decadal Oscillation (AMO) index] accounts for over 95 % of the observed 1900–2015 temperature variance. This statistical regression model reproduces very accurately the past warming (0.96 °C compared to the observed 0.95 °C) and projects the future 2015–2100 warming to be around 0.95 °C (with the IPCC 2013 suggested RCP4.5 radiative forcing and an assumed cyclic AMO behavior). The AMO contribution to the 1970–2005 warming was between 0.13 and 0.20 °C (depending on which AMO index is used) compared to the GHGA contribution of 0.49–0.58 °C. During the twenty-first century AMO cycle the AMO contribution is projected to remain the same (0.13–0.20 °C), while the GHGA contribution is expected to decrease to 0.21–0.25 °C due to the levelling off of the GHGA radiative forcing that is assumed according to the RCP4.5 scenario. Therefore, the anthropogenic contribution and natural variability are expected to contribute about equally to the anticipated global warming during the second half of the twenty-first century for the RCP4.5 trajectory.« less

  17. The Use of Oceanic Indices Variations Due to Climate Change to Predict Annual Discharge Variations in Northeastern United States

    NASA Astrophysics Data System (ADS)

    Berton, R.; Shaw, S. B.; Chandler, D. G.; Driscoll, C. T.

    2014-12-01

    Climatic change affects streamflow in watersheds with winter snowpack and an annual snowmelt hydrograph. In the northeastern US, changes in streamflow are driven by both the advanced timing of snowmelt and increasing summer precipitation. Projections of climate for the region in the 21st century is for warmer winters and wetter summers. Water planners need to understand future changes in flow metrics to determine if the current water resources are capable of fulfilling future demands or adapting to future changes in climate. The study of teleconnection patterns between oceanic indices variations and hydrologic variables may help improve the understanding of future water resources conditions in a watershed. The purpose of this study is to evaluate the correlation between oceanic indices and discharge variations in the Merrimack Watershed. The Merrimack Watershed is the fourth largest basin in New England which drains much of New Hampshire and northeastern portions of Massachusetts, USA. Variations in sea surface temperature (SST) and sea level pressure (SLP) are defined by the Atlantic Multi-decadal Oscillation (AMO) and the North Atlantic Oscillation (NAO), respectively. We hypothesize that temporal changes in discharge are related to AMO and NAO variations since precipitation and discharge are highly correlated in the Merrimack. The Merrimack Watershed consists of undisturbed (reference) catchments and disturbed (developed) basins with long stream gauge records (> 100 years). Developed basins provide an opportunity to evaluate the impacts of river regulation and land development on teleconnection patterns as well as changing climate. Time series of AMO and NAO indices over the past 150 years along with Merrimack annual precipitation and discharge time series have shown a 1 to 2-year watershed hydrologic memory; higher correlation between Merrimack‎ annual precipitation and discharge with AMO and NAO are observed when a 1 to 2-year lag is given to AMO and NAO

  18. The role of Atlantic Multi-decadal Oscillation in the global mean temperature variability

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Chylek, Petr; Klett, James D.; Dubey, Manvendra K.

    We simulated the global mean 1900–2015 warming by 42 Coupled Models Inter-comparison Project, phase 5 (CMIP5) climate models varies between 0.58 and 1.70 °C. The observed warming according to the NASA GISS temperature analysis is 0.95 °C with a 1200 km smoothing radius, or 0.86 °C with a 250 km smoothing radius. The projection of the future 2015–2100 global warming under a moderate increase of anthropogenic radiative forcing (RCP4.5 scenario) by individual models is between 0.7 and 2.3 °C. The CMIP5 climate models agree that the future climate will be warmer; however, there is little consensus as to how largemore » the warming will be (reflected by an uncertainty of over a factor of three). Moreover, a parsimonious statistical regression model with just three explanatory variables [anthropogenic radiative forcing due to greenhouse gases and aerosols (GHGA), solar variability, and the Atlantic Multi-decadal Oscillation (AMO) index] accounts for over 95 % of the observed 1900–2015 temperature variance. This statistical regression model reproduces very accurately the past warming (0.96 °C compared to the observed 0.95 °C) and projects the future 2015–2100 warming to be around 0.95 °C (with the IPCC 2013 suggested RCP4.5 radiative forcing and an assumed cyclic AMO behavior). The AMO contribution to the 1970–2005 warming was between 0.13 and 0.20 °C (depending on which AMO index is used) compared to the GHGA contribution of 0.49–0.58 °C. During the twenty-first century AMO cycle the AMO contribution is projected to remain the same (0.13–0.20 °C), while the GHGA contribution is expected to decrease to 0.21–0.25 °C due to the levelling off of the GHGA radiative forcing that is assumed according to the RCP4.5 scenario. Therefore, the anthropogenic contribution and natural variability are expected to contribute about equally to the anticipated global warming during the second half of the twenty-first century for the RCP4.5 trajectory.« less

  19. Evaluation of the Atlantic Multidecadal Oscillation Impact on Large-Scale Atmospheric Circulation in the Atlantic Region in Summer

    NASA Astrophysics Data System (ADS)

    Semenov, V. A.; Cherenkova, E. A.

    2018-02-01

    The influence of the Atlantic Multidecadal Oscillation (AMO) on large-scale atmospheric circulation in the Atlantic region in summer for the period of 1950-2015 is investigated. It is shown that the intensification of the summer North Atlantic Oscillation (NAO) with significant changes in sea level pressure anomalies in the main centers of action (over Greenland and the British Isles) occurred while the North Atlantic was cooler. Sea surface temperature anomalies, which are linked to the AMO in the summer season, affect both the NAO index and fluctuations of the Eastern Atlantic/Western Russia (EAWR) centers of action. The positive (negative) phase of the AMO is characterized by a combination of negative (positive) values of the NAO and EAWR indices. The dominance of the opposite phases of the teleconnection indices in summer during the warm North Atlantic and in its colder period resulted in differences in the regional climate in Europe.

  20. A New Method for Interpreting Nonstationary Running Correlations and Its Application to the ENSO-EAWM Relationship

    NASA Astrophysics Data System (ADS)

    Geng, Xin; Zhang, Wenjun; Jin, Fei-Fei; Stuecker, Malte F.

    2018-01-01

    We here propose a new statistical method to interpret nonstationary running correlations by decomposing them into a stationary part and a first-order Taylor expansion approximation for the nonstationary part. Then, this method is applied to investigate the nonstationary behavior of the El Niño-Southern Oscillation (ENSO)-East Asian winter monsoon (EAWM) relationship, which exhibits prominent multidecadal variations. It is demonstrated that the first-order approximation of the nonstationary part can be expressed to a large extent by the impact of the nonlinear interaction between the Atlantic Multidecadal Oscillation (AMO) and ENSO (AMO*Niño3.4) on the EAWM. Therefore, the nonstationarity in the ENSO-EAWM relationship comes predominantly from the impact of an AMO modulation on the ENSO-EAWM teleconnection via this key nonlinear interaction. This general method can be applied to investigate nonstationary relationships that are often observed between various different climate phenomena.

  1. Understanding the causes of recent warming of mediterranean waters. How much could be attributed to climate change?

    PubMed

    Macias, Diego; Garcia-Gorriz, Elisa; Stips, Adolf

    2013-01-01

    During the past two decades, Mediterranean waters have been warming at a rather high rate resulting in scientific and social concern. This warming trend is observed in satellite data, field data and model simulations, and affects both surface and deep waters throughout the Mediterranean basin. However, the warming rate is regionally different and seems to change with time, which has led to the question of what causes underlie the observed trends. Here, we analyze available satellite information on sea surface temperature (SST) from the last 25 years using spectral techniques and find that more than half of the warming tendency during this period is due to a non-linear, wave-like tendency. Using a state of the art hydrodynamic model, we perform a hindcast simulation and obtain the simulated SST evolution of the Mediterranean basin for the last 52 years. These SST results show a clear sinusoidal tendency that follows the Atlantic Multidecadal Oscillation (AMO) during the simulation period. Our results reveal that 58% of recent warming in Mediterranean waters could be attributed to this AMO-like oscillation, being anthropogenic-induced climate change only responsible for 42% of total trend. The observed acceleration of water warming during the 1990s therefore appears to be caused by a superimposition of anthropogenic-induced warming with the positive phase of the AMO, while the recent slowdown of this tendency is likely due to a shift in the AMO phase. It has been proposed that this change in the AMO phase will mask the effect of global warming in the forthcoming decades, and our results indicate that the same could also be applicable to the Mediterranean Sea. Henceforth, natural multidecadal temperature oscillations should be taken into account to avoid underestimation of the anthropogenic-induced warming of the Mediterranean basin in the future.

  2. Global ecological pattern of ammonia-oxidizing archaea.

    PubMed

    Cao, Huiluo; Auguet, Jean-Christophe; Gu, Ji-Dong

    2013-01-01

    The global distribution of ammonia-oxidizing archaea (AOA), which play a pivotal role in the nitrification process, has been confirmed through numerous ecological studies. Though newly available amoA (ammonia monooxygenase subunit A) gene sequences from new environments are accumulating rapidly in public repositories, a lack of information on the ecological and evolutionary factors shaping community assembly of AOA on the global scale is apparent. We conducted a meta-analysis on uncultured AOA using over ca. 6,200 archaeal amoA gene sequences, so as to reveal their community distribution patterns along a wide spectrum of physicochemical conditions and habitat types. The sequences were dereplicated at 95% identity level resulting in a dataset containing 1,476 archaeal amoA gene sequences from eight habitat types: namely soil, freshwater, freshwater sediment, estuarine sediment, marine water, marine sediment, geothermal system, and symbiosis. The updated comprehensive amoA phylogeny was composed of three major monophyletic clusters (i.e. Nitrosopumilus, Nitrosotalea, Nitrosocaldus) and a non-monophyletic cluster constituted mostly by soil and sediment sequences that we named Nitrososphaera. Diversity measurements indicated that marine and estuarine sediments as well as symbionts might be the largest reservoirs of AOA diversity. Phylogenetic analyses were further carried out using macroevolutionary analyses to explore the diversification pattern and rates of nitrifying archaea. In contrast to other habitats that displayed constant diversification rates, marine planktonic AOA interestingly exhibit a very recent and accelerating diversification rate congruent with the lowest phylogenetic diversity observed in their habitats. This result suggested the existence of AOA communities with different evolutionary history in the different habitats. Based on an up-to-date amoA phylogeny, this analysis provided insights into the possible evolutionary mechanisms and environmental

  3. A hypothesis of a redistribution of North Atlantic swordfish based on changing ocean conditions

    NASA Astrophysics Data System (ADS)

    Schirripa, Michael J.; Abascal, F.; Andrushchenko, Irene; Diaz, Guillermo; Mejuto, Jaime; Ortiz, Maricio; Santos, M. N.; Walter, John

    2017-06-01

    Conflicting trends in indices of abundance for North Atlantic swordfish starting in the mid-to late 1990s, in the form of fleet specific catch-per-unit-effort (CPUE), suggest the possibility of a spatial shift in abundance to follow areas of preferred temperature. The observed changes in the direction of the CPUEs correspond with changes in trends in the summer Atlantic Multidecadal Oscillation (AMO), a long term mode of variability of North Atlantic sea surface temperature. To test the hypothesis of a relation between the CPUE and the AMO, the CPUEs were made spatially explicit by re-estimating using an ;areas-as-fleets; approach. These new CPUEs were then used to create alternative stock histories. The residuals of the fit were then regressed against the summer AMO. Significant, and opposite, relations were found in the regressions between eastern and western Atlantic areas. When the AMO was in a warm phase, the CPUEs in the western (eastern) areas were higher (lower) than predicted by the assessment model fit. Given the observed temperature tolerance limits of swordfish, it is possible that either their preferred habitat, prey species, or both have shifted spatial distributions resulting in conflicting CPUE indices. Because the available CPUE time series only overlaps with one change in the sign of the AMO ( 1995), it is not clear whether this is a directional or cyclical trend. Given the relatively localized nature of many of the fishing fleets, and the difficulty of separating fleet effects from changes in oceanography we feel that it is critical to create CPUE indices by combining data across similar fleets that fish in similar areas. This approach allowed us to evaluate area-specific catch rates which provided the power to detect basin-wide responses to changing oceanography, a critical step for providing robust management advice in a changing climate.

  4. Ammonia oxidizing archaea are the predominant nitrifiers in disturbed and undisturbed southern US pine forests

    NASA Astrophysics Data System (ADS)

    Mushinski, R. M.; Boutton, T. W.; Gentry, T. J.; Dorosky, R. J.

    2016-12-01

    The rate-limiting step in nitrification, ammonia oxidation, is performed by both ammonia oxidizing bacteria (AOB) and archaea (AOA); however, reports on the relative contribution of each of these groups to forest soil nitrification has varied. We coupled qPCR and next generation sequencing of the amoA gene to a whole-soil assay that stimulates nitrification and allows for the discrimination of AOA- from AOB-activity using 1-octyne, which inhibits the activity of the bacterial ammonia monooxygenase. Soils, to a depth of 1 meter, were collected from replicated (n = 3) loblolly pine (Pinus taeda L.) stands subjected to three different intensities of timber harvest (i.e., unharvested old growth stands, bole-only harvest stands, and whole-tree harvest + forest floor removal stands). The abundance of both bacterial and archaeal amoA were influenced by harvest method and soil depth; furthermore, archaeal amoA was 13x more abundant than bacterial amoA, across all soil depths. Sequencing and subsequent annotation of the ammonia oxidizing community revealed that the AOA were dominated by Crenarchaeota and AOB were dominated by Nitrosospira. Surface mineral soils (0-10 cm) amended with 1-octyne revealed that approximately 67-86% of total nitrification can be attributable to AOA activity. The highest rates of nitrification (total and 1-octyne resistant) occurred in the soils taken from the unharvested reference stands which were significantly greater than harvested stands. We can conclude that in this pine forest system, AOA dominates AOB in regards to amoA copy number and ammonia oxidizing activity. Not only is this study one of the first to investigate the ammonia-oxidizing population in southern pine forests, but also illustrates that timber harvest can lead to long-term alterations in nitrogen cycle processes.

  5. Small GTPase R-Ras participates in neural tube formation in zebrafish embryonic spinal cord.

    PubMed

    Ohata, Shinya; Uga, Hideko; Okamoto, Hitoshi; Katada, Toshiaki

    2018-06-27

    Ras related (R-Ras), a small GTPase, is involved in the maintenance of apico-basal polarity in neuroepithelial cells of the zebrafish hindbrain, axonal collapse in cultured murine hippocampal neurons, and maturation of blood vessels in adult mice. However, the role of R-Ras in neural tube formation remains unknown. Using antisense morpholino oligonucleotides (AMOs), we found that in the spinal cord of zebrafish embryos, the lumen was formed bilaterally in rras morphants, whereas it was formed at the midline in control embryos. As AMO can cause off-target effects, we generated rras mutant zebrafish lines using CRISPR/Cas9 technology. Although these rras mutant embryos did not have a bilateral lumen in the spinal cord, the following findings suggest that the phenotype is unlikely due to an off-target effect of rras AMO: 1) The rras morphant phenotype was rescued by an injection of AMO-resistant rras mRNA, and 2) a bilaterally segregated spinal cord was not observed in rras mutant embryos injected with rras AMO. The results suggest that the function of other ras family genes may be redundant in rras mutants. Previous research reported a bilaterally formed lumen in the spinal cord of zebrafish embryos with a mutation in a planar cell polarity (PCP) gene, van gogh-like 2 (vangl2). In the present study, in cultured cells, R-Ras was co-immunoprecipitated with Vangl2 but not with another PCP regulator, Pricke1. Interestingly, the interaction between R-Ras and Vangl2 was stronger in guanine-nucleotide free point mutants of R-Ras than in wild-type or constitutively active (GTP-bound) forms of R-Ras. R-Ras may regulate neural tube formation in cooperation with Vangl2 in the developing zebrafish spinal cord. Copyright © 2018 Elsevier Inc. All rights reserved.

  6. Automated ensemble assembly and validation of microbial genomes.

    PubMed

    Koren, Sergey; Treangen, Todd J; Hill, Christopher M; Pop, Mihai; Phillippy, Adam M

    2014-05-03

    The continued democratization of DNA sequencing has sparked a new wave of development of genome assembly and assembly validation methods. As individual research labs, rather than centralized centers, begin to sequence the majority of new genomes, it is important to establish best practices for genome assembly. However, recent evaluations such as GAGE and the Assemblathon have concluded that there is no single best approach to genome assembly. Instead, it is preferable to generate multiple assemblies and validate them to determine which is most useful for the desired analysis; this is a labor-intensive process that is often impossible or unfeasible. To encourage best practices supported by the community, we present iMetAMOS, an automated ensemble assembly pipeline; iMetAMOS encapsulates the process of running, validating, and selecting a single assembly from multiple assemblies. iMetAMOS packages several leading open-source tools into a single binary that automates parameter selection and execution of multiple assemblers, scores the resulting assemblies based on multiple validation metrics, and annotates the assemblies for genes and contaminants. We demonstrate the utility of the ensemble process on 225 previously unassembled Mycobacterium tuberculosis genomes as well as a Rhodobacter sphaeroides benchmark dataset. On these real data, iMetAMOS reliably produces validated assemblies and identifies potential contamination without user intervention. In addition, intelligent parameter selection produces assemblies of R. sphaeroides comparable to or exceeding the quality of those from the GAGE-B evaluation, affecting the relative ranking of some assemblers. Ensemble assembly with iMetAMOS provides users with multiple, validated assemblies for each genome. Although computationally limited to small or mid-sized genomes, this approach is the most effective and reproducible means for generating high-quality assemblies and enables users to select an assembly best tailored to

  7. Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil.

    PubMed

    Mao, Yuejian; Yannarell, Anthony C; Davis, Sarah C; Mackie, Roderick I

    2013-03-01

    Biomass production for bioenergy may change soil microbes and influence ecosystem properties. To explore the impact of different bioenergy cropping systems on soil microorganisms, the compositions and quantities of soil microbial communities (16S rRNA gene) and N-cycling functional groups (nifH, bacterial amoA, archaeal amoA and nosZ genes) were assessed under maize, switchgrass and Miscanthus x giganteus at seven sites representing a climate gradient (precipitation and temperature) in Illinois, USA. Overall, the site-to-site variation in community composition surpassed the variation due to plant type, and microbial communities under each crop did not converge on a 'typical' species assemblage. Fewer than 5% of archaeal amoA, bacterial amoA, nifH and nosZ OTUs were significantly different among these crops, but the largest differences observed at each site were found between maize and the two perennial grasses. Quantitative PCR revealed that the abundance of the nifH gene was significantly higher in the perennial grasses than in maize, and we also found significantly higher total N in the perennial grass soils than in maize. Thus, we conclude that cultivation of these perennial grasses, instead of maize, as bioenergy feedstocks can improve soil ecosystem nitrogen sustainability by increasing the population size of N-fixing bacteria. © 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.

  8. Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea

    PubMed Central

    Horak, Rachel E A; Qin, Wei; Schauer, Andy J; Armbrust, E Virginia; Ingalls, Anitra E; Moffett, James W; Stahl, David A; Devol, Allan H

    2013-01-01

    Archaeal ammonia oxidizers (AOAs) are increasingly recognized as prominent members of natural microbial assemblages. Evidence that links the presence of AOA with in situ ammonia oxidation activity is limited, and the abiotic factors that regulate the distribution of AOA natural assemblages are not well defined. We used quantitative PCR to enumerate amoA (encodes α-subunit of ammonia monooxygenase) abundances; AOA amoA gene copies greatly outnumbered ammonia-oxidizing bacteria and amoA transcripts were derived primarily from AOA throughout the water column of Hood Canal, Puget Sound, WA, USA. We generated a Michaelis–Menten kinetics curve for ammonia oxidation by the natural community and found that the measured Km of 98±14 nmol l−1 was close to that for cultivated AOA representative Nitrosopumilus maritimus SCM1. Temperature did not have a significant effect on ammonia oxidation rates for incubation temperatures ranging from 8 to 20 °C, which is within the temperature range for depths of measurable ammonia oxidation at the site. This study provides substantial evidence, through both amoA gene copies and transcript abundances and the kinetics response, that AOA are the dominant active ammonia oxidizers in this marine environment. We propose that future ammonia oxidation experiments use a Km for the natural community to better constrain ammonia oxidation rates determined with the commonly used 15NH4+ dilution technique. PMID:23657360

  9. [Diversity of beta-proteobacterial ammonia-oxidizing bacteria and ammonia-oxidizing archaea in shrimp farm sediment].

    PubMed

    Gao, Lihai; Lin, Weitie

    2011-01-01

    In order to study the diversity of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in shrimp farm sediment. Total microbial DNA was directly extracted from the shrimp farm sediment. The clone library of amoA genes were constructed with beta-Proteobacterial-AOB and AOA specific primers. The library was screened by PCR-restriction fragment length polymorphism (RFLP) analysis and clones with unique RFLP patterns were sequenced. Phylogenetic analyses of the amoA gene fragments showed that all AOB sequences from shrimp farm sediment were affiliated with Nitrosomonas (61.54%) or Nitrosomonas-like (38. 46%) species and grouped into Nitrosomonas communis cluster, Nitrosomonas sp. Nm148 cluster, Nitrosomonas oligotropha cluster. All AOA sequences belonged to the kingdom Crenarchaeote except that one Operational Taxa Unit (OTU) sequence was Unclassified-Archaea and fell within cluster S (soil origin). AOB and AOA species composition included 13 OTUs and 9 OTUs. The clone coverage of bacterial and archaeal amoA genes was 73.47% and 90.43%. The Shannon-Wiener index, Evenness index, Simpson index and Richness index of AOB were higher than those of AOA. These findings represent the first detailed examination of archaeal amoA diversity in shrimp farm sediment and demonstrate that diverse communities of Crenarchaeote capable of ammonia oxidation are present within shrimp farm sediment, where they may be actively involved in nitrification.

  10. Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea.

    PubMed

    Horak, Rachel E A; Qin, Wei; Schauer, Andy J; Armbrust, E Virginia; Ingalls, Anitra E; Moffett, James W; Stahl, David A; Devol, Allan H

    2013-10-01

    Archaeal ammonia oxidizers (AOAs) are increasingly recognized as prominent members of natural microbial assemblages. Evidence that links the presence of AOA with in situ ammonia oxidation activity is limited, and the abiotic factors that regulate the distribution of AOA natural assemblages are not well defined. We used quantitative PCR to enumerate amoA (encodes α-subunit of ammonia monooxygenase) abundances; AOA amoA gene copies greatly outnumbered ammonia-oxidizing bacteria and amoA transcripts were derived primarily from AOA throughout the water column of Hood Canal, Puget Sound, WA, USA. We generated a Michaelis-Menten kinetics curve for ammonia oxidation by the natural community and found that the measured Km of 98±14 nmol l(-1) was close to that for cultivated AOA representative Nitrosopumilus maritimus SCM1. Temperature did not have a significant effect on ammonia oxidation rates for incubation temperatures ranging from 8 to 20 °C, which is within the temperature range for depths of measurable ammonia oxidation at the site. This study provides substantial evidence, through both amoA gene copies and transcript abundances and the kinetics response, that AOA are the dominant active ammonia oxidizers in this marine environment. We propose that future ammonia oxidation experiments use a Km for the natural community to better constrain ammonia oxidation rates determined with the commonly used (15)NH4(+) dilution technique.

  11. Evaluating the potential of three Fe- and Mn-(nano)oxides for the stabilization of Cd, Cu and Pb in contaminated soils.

    PubMed

    Michálková, Zuzana; Komárek, Michael; Šillerová, Hana; Della Puppa, Loïc; Joussein, Emmanuel; Bordas, François; Vaněk, Aleš; Vaněk, Ondřej; Ettler, Vojtěch

    2014-12-15

    The potential of three Fe- and Mn-(nano)oxides for stabilizing Cd, Cu and Pb in contaminated soils was investigated using batch and column experiments, adsorption tests and tests of soil microbial activity. A novel synthetic amorphous Mn oxide (AMO), which was recently proposed as a stabilizing amendment, proved to be the most efficient in decreasing the mobility of the studied metals compared to nano-maghemite and nano-magnetite. Its application resulted in significant decreases of exchangeable metal fractions (92%, 92% and 93% decreases of Cd, Cu and Pb concentrations, respectively). The adsorption capacity of the AMO was an order of magnitude higher than those recorded for the other amendments. It was also the most efficient treatment for reducing Cu concentrations in the soil solution. No negative effects on soil microorganisms were recorded. On the other hand, the AMO was able to dissolve soil organic matter to some extent. Copyright © 2014 Elsevier Ltd. All rights reserved.

  12. Forest productivity in southwestern Europe is controlled by coupled North Atlantic and Atlantic Multidecadal Oscillations.

    PubMed

    Madrigal-González, Jaime; Ballesteros-Cánovas, Juan A; Herrero, Asier; Ruiz-Benito, Paloma; Stoffel, Markus; Lucas-Borja, Manuel E; Andivia, Enrique; Sancho-García, Cesar; Zavala, Miguel A

    2017-12-20

    The North Atlantic Oscillation (NAO) depicts annual and decadal oscillatory modes of variability responsible for dry spells over the European continent. The NAO therefore holds a great potential to evaluate the role, as carbon sinks, of water-limited forests under climate change. However, uncertainties related to inconsistent responses of long-term forest productivity to NAO have so far hampered firm conclusions on its impacts. We hypothesize that, in part, such inconsistencies might have their origin in periodical sea surface temperature anomalies in the Atlantic Ocean (i.e., Atlantic Multidecadal Oscillation, AMO). Here we show strong empirical evidence in support of this hypothesis using 120 years of periodical inventory data from Iberian pine forests. Our results point to AMO + NAO + and AMO - NAO - phases as being critical for forest productivity, likely due to decreased winter water balance and abnormally low winter temperatures, respectively. Our findings could be essential for the evaluation of ecosystem functioning vulnerabilities associated with increased climatic anomalies under unprecedented warming conditions in the Mediterranean.

  13. Prevalence of Nitrosomonas cluster 7 populations in the ammonia-oxidizing community of a submerged membrane bioreactor treating urban wastewater under different operation conditions.

    PubMed

    Cerrone, F; Poyatos, J M; Molina-Muñoz, M; Cortés-Lorenzo, C; González-López, J; Rodelas, B

    2013-07-01

    A pilot-scale ultrafiltration membrane bioreactor (MBR) was used for the aerobic treatment of urban wastewater in four experimental stages influenced by seasonal temperature and different sets of operation conditions. The structure of the ammonia-oxidizing bacteria (AOB) community was profiled by temperature gradient gel electrophoresis (TGGE), based on the amplification and separation of partial ammonia-monoxygenase subunit A (amoA) genes. Canonical correspondence analysis revealed that temperature, hydraulic retention time and percentage of ammonia removal had a significant effect on the fingerprints of AOB communities. Phylogenetic analysis conducted on amoA/AmoA sequences of reamplified TGGE bands showed, however, that closely related ammonia-oxidizing populations inhabited the sludge of the MBR in all experimental stages. Nitrosomonas cluster 7 populations (N. europaea-N. eutropha cluster) prevailed under all conditions tested, even when the MBR was operated under complete biomass retention or at low temperatures, suggesting that the high ammonia concentrations in the system were determinant to select r-strategist AOB.

  14. Evidence for a Gibberellin Biosynthetic Origin of Ceratopteris Antheridiogen 1

    PubMed Central

    Warne, Thomas R.; Hickok, Leslie G.

    1989-01-01

    The species-specific chemical messenger, antheridiogen ACe, mediates the differentiation of male gametophytes in the fern Ceratopteris. In order to investigate the biochemical origin of antheridiogen, the effect of the inhibitors, 2′-isopropyl-4′-(trimethylammoniumchloride)-5′ -methylphenylpiperidine-1-carboxylate (AMO-1618), 2-chloroethyl trimethylammonium chloride (CCC), and α-cyclopropyl-α-(4-methoxyphenyl)-5-pyrimidine methyl alcohol (ancymidol) on gametophytic sex expression was determined in C. richardii. Both AMO-1618 and ancymidol blocked the production of male gametophytes in three genetically defined strains of C. richardii that exhibit different sensitivities to antheridiogen. Antheridiogen supplementation overcame inhibition by AMO-1618 and ancymidol, except in one strain (HaC18) that is insensitive to antheridiogen supplementation. These data suggest that the synthesis of Ceratopteris antheridiogen, a taxon that is insensitive to exogenously supplied gibberellins, occurs via a pathway that may include steps in common with gibberellin biosynthesis or involves similar reactions. PMID:16666578

  15. Pacific and Atlantic Ocean influences on multidecadal drought frequency in the United States

    USGS Publications Warehouse

    McCabe, G.J.; Palecki, M.A.; Betancourt, J.L.

    2004-01-01

    More than half (52%) of the spatial and temporal variance in multidecadal drought frequency over the conterminous United States is attributable to the Pacific Decadal Oscillation (PDO) and the Atlantic Multidecadal Oscillation (AMO). An additional 22% of the variance in drought frequency is related to a complex spatial pattern of positive and negative trends in drought occurrence possibly related to increasing Northern Hemisphere temperatures or some other unidirectional climate trend. Recent droughts with broad impacts over the conterminous U.S. (1996, 1999-2002) were associated with North Atlantic warming (positive AMO) and north-eastern and tropical Pacific cooling (negative PDO). Much of the long-term predictability of drought frequency may reside in the multidecadal behavior of the North Atlantic Ocean. Should the current positive AMO (warm North Atlantic) conditions persist into the upcoming decade, we suggest two possible drought scenarios that resemble the continental-scale patterns of the 1930s (positive PDO) and 1950s (negative PDO) drought.

  16. AMOS (ARPA Maui Optical Station) Seeing Quality Measurements

    DTIC Science & Technology

    1976-01-01

    for the microthermal probes. The report itself, while compiled and edited at RADC, may be considered as coming from equal contributions of...experiment 3 3. Power spectra for Run 16 for microthermal sensors 1, 4 and 5 13 4. Outer scale L0 versus time from start of mission for Runs 7, 13...Differential Angle of Arrival Standard Deviations and Derived Values of r 58 o LIST OF TABLES Page 1. Position of microthermal sensors for Augusc

  17. AMO Teledioptric System for age-related macular degeneration

    NASA Astrophysics Data System (ADS)

    Chou, Jim-Son; Ting, Albert C.

    1994-05-01

    A 2.5 X magnification system consisting of a two-zone intraocular implant and a spectacle was developed, tested, and clinically tried by fifty patients with cataract ad age-related macular degeneration. Optical bench testing results and clinical data confirmed that the field of view of the system was 2.6 times wider than an equivalent external telescope. The study also demonstrated that the implant itself was clinically equivalent to a standard monofocal intraocular lens for cataract. The clinical study indicated that higher magnification without compromising the compactness and optical quality was needed as the disease progressed. Also, a sound vision rehabilitation process is important to provide patients the full benefits of the system.

  18. The NASA Lewis Research Center program in space solar cell research and technology. [efficient silicon solar cell development program

    NASA Technical Reports Server (NTRS)

    Brandhorst, H. W., Jr.

    1979-01-01

    Progress in space solar cell research and technology is reported. An 18 percent-AMO-efficient silicon solar cell, reduction in the radiation damage suffered by silicon solar cells in space, and high efficiency wrap-around contact and thin (50 micrometer) coplanar back contact silicon cells are among the topics discussed. Reduction in the cost of silicon cells for space use, cost effective GaAs solar cells, the feasibility of 30 percent AMO solar energy conversion, and reliable encapsulants for space blankets are also considered.

  19. High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific.

    PubMed

    Molina, Verónica; Belmar, Lucy; Ulloa, Osvaldo

    2010-09-01

    The community structure of putative aerobic ammonia-oxidizing archaea (AOA) was explored in two oxygen-deficient ecosystems of the eastern South Pacific: the oxygen minimum zone off Peru and northern Chile (11°S-20°S), where permanent suboxic and low-ammonium conditions are found at intermediate depths, and the continental shelf off central Chile (36°S), where seasonal oxygen-deficient and relatively high-ammonium conditions develop in the water column, particularly during the upwelling season. The AOA community composition based on the ammonia monooxygenase subunit A (amoA) genes changed according to the oxygen concentration in the water column and the ecosystem studied, showing a higher diversity in the seasonal low-oxygen waters. The majority of the archaeal amoA genotypes was affiliated to the uncultured clusters A (64%) and B (35%), with Cluster A AOA being mainly associated with higher oxygen and ammonium concentrations and Cluster B AOA with permanent oxygen- and ammonium-poor waters. Q-PCR assays revealed that AOA are an abundant community (up to 10(5) amoA copies ml(-1) ), while bacterial amoA genes from β proteobacteria were undetected. Our results thus suggest that a diverse uncultured AOA community, for which, therefore, we do not have any physiological information, to date, is an important component of the nitrifying community in oxygen-deficient marine ecosystems, and particularly in rich coastal upwelling ones. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

  20. Soil nitrogen cycling and availability are linked to ammonia oxidizer abundance across a tropical mean annual temperature gradient

    NASA Astrophysics Data System (ADS)

    Pierre, S.; Litton, C. M.; Giardina, C. P.; Sparks, J. P.; Groffman, P.; Hewson, I.; Fahey, T.

    2016-12-01

    Interactions among environmental variables can obfuscate the primary drivers linking soil microbial community function to ecosystem biogeochemistry. These connections are important to understand in order to predict ecosystem responses to global climate change. In particular, the role of mean annual temperature (MAT) in regulating carbon (C) and nitrogen (N) cycling via microbial communities remains unclear. To study these dynamics in situ, we used a a natural elevation gradient of tropical wet montane forest on Mauna Kea, Hawai'i with established permanent plots. Across the gradient, environmental variables besides MAT remain constant. We studied the abundance and activity of the amoA gene, which regulates the rate-limiting step of nitrification, in ammonia oxidizing archaea (AOA) and bacteria (AOB) with relation to N availability and cycling across increasing MAT. Our results show that the abundance of amoA is positively correlated with MAT (p<0.05; r2=0.34) and that MAT and amoA abundance are the primary predictors of nitrate (NO3-) bioavailability (p<0.05). We also found that the relative expression of amoA (cDNA/DNA) is not correlated with MAT or potential net nitrification rate. Our results indicate the direct role of MAT in ammonia oxidizer community structure and demonstrate feedbacks to nutrient availability in forest systems. These findings suggest that forest primary production and carbon cycling may be affected by AOA and AOB responses to rising MAT.

  1. Internally Generated and Externally Forced Multidecadal Oceanic Modes and their Influence on the Summer Rainfall over East Asia

    NASA Astrophysics Data System (ADS)

    Si, D.; Hu, A.

    2017-12-01

    The interdecadal oceanic variabilities can be generated from both internal and external processes, and these variabilities can significantly modulate our climate on global and regional scale, such as the warming slowdown in the early 21st century, and the rainfall in East Asia. By analyzing simulations from a unique Community Earth System Model (CESM) Large Ensemble (CESM_LE) project, we show that the Interdecadal Pacific Oscillation (IPO) is primarily an internally generated oceanic variability, while the Atlantic Multidecadal Oscillation (AMO) may be an oceanic variability generated by internal oceanic processes and modulated by external forcings in the 20th century. Although the observed relationship between IPO and the Yangtze-Huaihe River valley (YHRV) summer rainfall in China is well simulated in both the preindustrial control and 20th century ensemble, none of the 20th century ensemble members can reproduce the observed time evolution of both IPO and YHRV due to the unpredictable nature of IPO on multidecade timescale. On the other hand, although CESM_LE cannot reproduce the observed relationship between AMO and Huanghe River valley (HRV) summer rainfall of China in the preindustrial control simulation, this relationship in the 20th century simulations is well reproduced, and the chance to reproduce the observed time evolution of both AMO and HRV rainfall is about 30%, indicating the important role of the interaction between the internal processes and the external forcing to realistically simulate the AMO and HRV rainfall.

  2. Atlantic Multidecadal Oscillation footprint on global high cloud cover

    NASA Astrophysics Data System (ADS)

    Vaideanu, Petru; Dima, Mihai; Voiculescu, Mirela

    2017-12-01

    Due to the complexity of the physical processes responsible for cloud formation and to the relatively short satellite database of continuous data records, cloud behavior in a warming climate remains uncertain. Identifying physical links between climate modes and clouds would contribute not only to a better understanding of the physical processes governing their formation and dynamics, but also to an improved representation of the clouds in climate models. Here, we identify the global footprint of the Atlantic Multidecadal Oscillation (AMO) on high cloud cover, with focus on the tropical and North Atlantic, tropical Pacific and on the circum-Antarctic sector. In the tropical band, the sea surface temperature (SST) and high cloud cover (HCC) anomalies are positively correlated, indicating a dominant role played by convection in mediating the influence of the AMO-related SST anomalies on the HCC field. The negative SST-HCC correlation observed in North Atlantic could be explained by the reduced meridional temperature gradient induced by the AMO positive phase, which would be reflected in less storms and negative HCC anomalies. A similar negative SST-HCC correlation is observed around Antarctica. The corresponding negative correlation around Antarctica could be generated dynamically, as a response to the intensified upward motion in the Ferrel cell. Despite the inherent imperfection of the observed and reanalysis data sets, the AMO footprint on HCC is found to be robust to the choice of dataset, statistical method, and specific time period considered.

  3. Ammonia and nitrite oxidation in the Eastern Tropical North Pacific

    NASA Astrophysics Data System (ADS)

    Peng, Xuefeng; Fuchsman, Clara A.; Jayakumar, Amal; Oleynik, Sergey; Martens-Habbena, Willm; Devol, Allan H.; Ward, Bess B.

    2015-12-01

    Nitrification plays a key role in the marine nitrogen (N) cycle, including in oceanic oxygen minimum zones (OMZs), which are hot spots for denitrification and anaerobic ammonia oxidation (anammox). Recent evidence suggests that nitrification links the source (remineralized organic matter) and sink (denitrification and anammox) of fixed N directly in the steep oxycline in the OMZs. We performed shipboard incubations with 15N tracers to characterize the depth distribution of nitrification in the Eastern Tropical North Pacific (ETNP). Additional experiments were conducted to investigate photoinhibition. Allylthiourea (ATU) was used to distinguish the contribution of archaeal and bacterial ammonia oxidation. The abundance of archaeal and β-proteobacterial ammonia monooxygenase gene subunit A (amoA) was determined by quantitative polymerase chain reaction. The rates of ammonia and nitrite oxidation showed distinct subsurface maxima, with the latter slightly deeper than the former. The ammonia oxidation maximum coincided with the primary nitrite concentration maximum, archaeal amoA gene maximum, and the subsurface nitrous oxide maximum. Negligible rates of ammonia oxidation were found at anoxic depths, where high rates of nitrite oxidation were measured. Archaeal amoA gene abundance was generally 1 to 2 orders of magnitude higher than bacterial amoA gene abundance, and inhibition of ammonia-oxidizing bacteria with 10 μM ATU did not affect ammonia oxidation rates, indicating the dominance of archaea in ammonia oxidation. These results depict highly dynamic activities of ammonia and nitrite oxidation in the oxycline of the ETNP OMZ.

  4. Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia pxidizer populations.

    PubMed

    Webster, Gordon; Embley, T Martin; Prosser, James I

    2002-01-01

    The impact of soil management practices on ammonia oxidizer diversity and spatial heterogeneity was determined in improved (addition of N fertilizer), unimproved (no additions), and semi-improved (intermediate management) grassland pastures at the Sourhope Research Station in Scotland. Ammonia oxidizer diversity within each grassland soil was assessed by PCR amplification of microbial community DNA with both ammonia oxidizer-specific, 16S rRNA gene (rDNA) and functional, amoA, gene primers. PCR products were analysed by denaturing gradient gel electrophoresis, phylogenetic analysis of partial 16S rDNA and amoA sequences, and hybridization with ammonia oxidizer-specific oligonucleotide probes. Ammonia oxidizer populations in unimproved soils were more diverse than those in improved soils and were dominated by organisms representing Nitrosospira clusters 1 and 3 and Nitrosomonas cluster 7 (closely related phylogenetically to Nitrosomonas europaea). Improved soils were only dominated by Nitrosospira cluster 3 and Nitrosomonas cluster 7. These differences were also reflected in functional gene (amoA) diversity, with amoA gene sequences of both Nitrosomonas and Nitrosospira species detected. Replicate 0.5-g samples of unimproved soil demonstrated significant spatial heterogeneity in 16S rDNA-defined ammonia oxidizer clusters, which was reflected in heterogeneity in ammonium concentration and pH. Heterogeneity in soil characteristics and ammonia oxidizer diversity were lower in improved soils. The results therefore demonstrate significant effects of soil management on diversity and heterogeneity of ammonia oxidizer populations that are related to similar changes in relevant soil characteristics.

  5. Biochemistry of Ammonia Monoxygenase from Nitrosomonas

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Alan Hooper

    2009-07-15

    Major results. 1. CytochromecM552, a protein in the electron transfer chain to ammonia monooxygenase. Purification, modeling of protein structure based on primary structure, characterization of 4 hemes by magnetic spectroscopy, potentiometry, ligand binding and turnover. Kim, H. J., ,Zatsman, et al. 2008). 2. Characterization of proteins which thought to be involved in the AMO reaction or to protect AMO from toxic nitrogenous intermediates such as NO. Nitrosocyanin is a protein present only in bacteria which catalyze the ammonia monoxygenase reaction (1). Cytochrome c P460 beta and cytochrome c’ beta.

  6. The Atomic, Molecular and Optical Science instrument at the Linac Coherent Light Source

    DOE PAGES

    Ferguson, Ken R.; Bucher, Maximilian; Bozek, John D.; ...

    2015-05-01

    The Atomic, Molecular and Optical Science (AMO) instrument at the Linac Coherent Light Source (LCLS) provides a tight soft X-ray focus into one of three experimental endstations. The flexible instrument design is optimized for studying a wide variety of phenomena requiring peak intensity. There is a suite of spectrometers and two photon area detectors available. An optional mirror-based split-and-delay unit can be used for X-ray pump–probe experiments. Recent scientific highlights illustrate the imaging, time-resolved spectroscopy and high-power density capabilities of the AMO instrument.

  7. Mapping, Charting and Geodesy Handbook

    DTIC Science & Technology

    1994-07-15

    Air-526 at (703) 604-3380 ext 8102 or 8118 [DSN 664, -.Of a copy of DMAI 8660.10 write DMA, Attn: AMO, Stop D-2, 4600 Sangamore Rd., Bethesda MD 20816 ...Instructions, Lists, and Handbooks from DMA, Attn: AMO, Stop D-2, 4600 Sangamore Rd., Bethesda MD 20816 or call (301) 227-2026 DSN [287] or fax (301) 227...DMA Combat Support Center Attn: CCOR, Stop D-16 6001 MacArthur Blvd. Bethesda, MD 20816 fax (301) 227-2498 DSN 287-2498 3. NOT SO ROUTINE ORDERING

  8. Impacts of Edaphic Factors on Communities of Ammonia-Oxidizing Archaea, Ammonia-Oxidizing Bacteria and Nitrification in Tropical Soils

    PubMed Central

    de Gannes, Vidya; Eudoxie, Gaius; Hickey, William J.

    2014-01-01

    Nitrification is a key process in soil nitrogen (N) dynamics, but relatively little is known about it in tropical soils. In this study, we examined soils from Trinidad to determine the edaphic drivers affecting nitrification levels and community structure of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in non-managed soils. The soils were naturally vegetated, ranged in texture from sands to clays and spanned pH 4 to 8. The AOA were detected by qPCR in all soils (ca. 105 to 106 copies archaeal amoA g−1 soil), but AOB levels were low and bacterial amoA was infrequently detected. AOA abundance showed a significant negative correlation (p<0.001) with levels of soil organic carbon, clay and ammonium, but was not correlated to pH. Structures of AOA and AOB communities, as determined by amoA terminal restriction fragment (TRF) analysis, differed significantly between soils (p<0.001). Variation in AOA TRF profiles was best explained by ammonium-N and either Kjeldahl N or total N (p<0.001) while variation in AOB TRF profiles was best explained by phosphorus, bulk density and iron (p<0.01). In clone libraries, phylotypes of archaeal amoA (predominantly Nitrososphaera) and bacterial amoA (predominanatly Nitrosospira) differed between soils, but variation was not correlated with pH. Nitrification potential was positively correlated with clay content and pH (p<0.001), but not to AOA or AOB abundance or community structure. Collectively, the study showed that AOA and AOB communities were affected by differing sets of edaphic factors, notably that soil N characteristics were significant for AOA, but not AOB, and that pH was not a major driver for either community. Thus, the effect of pH on nitrification appeared to mainly reflect impacts on AOA or AOB activity, rather than selection for AOA or AOB phylotypes differing in nitrifying capacity. PMID:24586878

  9. Abundance and diversity of ammonia-oxidizing archaea in response to various habitats in Pearl River Delta of China, a subtropical maritime zone.

    PubMed

    Li, Zhixin; Jin, Wenbiao; Liang, Zhaoyun; Yue, Yangyang; Lv, Junhong

    2013-06-01

    Ammonia-oxidizing archaea (AOA) are widely considered key to ammonia oxidation in various environments. However, little work has been conducted to simultaneously investigate the abundance and diversity of AOA as well as correlations between archaeal amoA genotypes and environmental parameters of different ecosystems at one district. To understand the abundance, diversity, and distribution of AOA in Pearl River Delta of China in response to various habitats, the archaeal amoA genes in soil, marine, river, lake, hot spring and wastewater treatment plant (WWTP) samples were investigated using real-time fluorescent quantitative PCR and clone libraries. Our analyses indicated that the diversity of AOA in various habitats was different and could be clustered into five major clades, i.e., estuary sediment, marine water/sediment, soil, hot spring and Cluster 1. Phylogenetic analyses revealed that the structure of AOA communities in similar ecological habitats exhibited strong relation. The canonical correspondence method indicated that the AOA community structure was strongly correlated to temperature, pH, total organic carbon, total nitrogen and dissolved oxygen variables. Assessing AOA amoA gene copy numbers, ranging from 6.84 x 10(6) to 9.45 x 10(7) copies/g in dry soil/sediment, and 6.06 x 10(6) to 2.41 x 10(7) copies/L in water samples, were higher than ammonia-oxidizing bacteria (AOB) by 1-2 orders of magnitude. However, AOA amoA copy numbers were much lower than AOB in WWTP activated sludge samples. Overall, these studies suggested that AOA may be a major contributor to ammonia oxidation in natural habitats but play a minor role in highly aerated activated sludge. The result also showed the ratio of AOA to AOB amoA gene abundance was positively correlated with temperature and less correlated with other environmental parameters. New data from our study provide increasing evidence for the relative abundance and diversity of ammonia-oxidizing archaea in the global

  10. Western tropical Pacific multidecadal variability forced by the Atlantic multidecadal oscillation

    NASA Astrophysics Data System (ADS)

    Kucharski, F.; Sun, C.; Li, J.; Jin, F. F.; Kang, I. S.; Ding, R.

    2017-12-01

    Observational analysis suggests that the western tropical Pacific (WTP) sea surface temperature (SST) shows predominant variability over multidecadal time scales, which is unlikely to be explained by the Interdecadal Pacific Oscillation. Here we show that this variability is largely explained by the remote Atlantic multidecadal oscillation (AMO). A suite of Atlantic Pacemaker experiments successfully reproduces the WTP multidecadal variability and the AMO-WTP SST connection. The AMO warm SST anomaly generates an atmospheric teleconnection to the North Pacific, which weakens the Aleutian low and subtropical North Pacific westerlies. The wind changes induce a subtropical North Pacific SST warming through wind-evaporation-SST effect, and in response to this warming, the surface winds converge towards the subtropical North Pacific from the tropics, leading to anomalous cyclonic circulation and low pressure over the WTP region. The warm SST anomaly further develops due to the SST-sea level pressure-cloud-longwave radiation positive feedback. Our findings suggest that the Atlantic Ocean acts as a key pacemaker for the western Pacific decadal climate variability.

  11. Effects of copper on the abundance and diversity of ammonia oxidizers during dairy cattle manure composting.

    PubMed

    Yin, Yanan; Song, Wen; Gu, Jie; Zhang, Kaiyu; Qian, Xun; Zhang, Xin; Zhang, Yajun; Li, Yang; Wang, Xiaojuan

    2016-12-01

    This study investigated the effects of adding Cu(II) at two exposure levels (50 and 500mgkg -1 , i.e., Cu50 and Cu500 treatments, respectively) on the activity of ammonia-oxidizing microorganisms during dairy cattle manure composting. The results showed that the pH, NH 4 + -N, NO 3 - -N, and potential ammonia oxidation values were inhibited significantly by the addition of Cu(II). Furthermore, the abundances of the ammonia-oxidizing archaea (AOA) amoA gene and ammonia-oxidizing bacteria (AOB) amoA gene were determined by quantitative PCR, and their compositions were evaluated by denaturing gradient gel electrophoresis (DGGE). AOA was the dominant ammonia oxidizing microorganism, of which the abundance was much higher than AOB during composting. Cu50 and Cu500 had significant inhibitory effects on the abundance of the amoA gene. The DGGE profile and statistical analysis showed that Cu(II) changed the AOA and AOB community structure and diversity, where Nitrosomonas and Crenarchaeota dominated throughout the composting process. Copyright © 2016. Published by Elsevier Ltd.

  12. Western tropical Pacific multidecadal variability forced by the Atlantic multidecadal oscillation

    NASA Astrophysics Data System (ADS)

    Sun, Cheng; Kucharski, Fred; Li, Jianping; Jin, Fei-Fei; Kang, In-Sik; Ding, Ruiqiang

    2017-07-01

    Observational analysis suggests that the western tropical Pacific (WTP) sea surface temperature (SST) shows predominant variability over multidecadal time scales, which is unlikely to be explained by the Interdecadal Pacific Oscillation. Here we show that this variability is largely explained by the remote Atlantic multidecadal oscillation (AMO). A suite of Atlantic Pacemaker experiments successfully reproduces the WTP multidecadal variability and the AMO-WTP SST connection. The AMO warm SST anomaly generates an atmospheric teleconnection to the North Pacific, which weakens the Aleutian low and subtropical North Pacific westerlies. The wind changes induce a subtropical North Pacific SST warming through wind-evaporation-SST effect, and in response to this warming, the surface winds converge towards the subtropical North Pacific from the tropics, leading to anomalous cyclonic circulation and low pressure over the WTP region. The warm SST anomaly further develops due to the SST-sea level pressure-cloud-longwave radiation positive feedback. Our findings suggest that the Atlantic Ocean acts as a key pacemaker for the western Pacific decadal climate variability.

  13. Contingent Pacific-Atlantic Ocean influence on multicentury wildfire synchrony over western North America.

    PubMed

    Kitzberger, Thomas; Brown, Peter M; Heyerdahl, Emily K; Swetnam, Thomas W; Veblen, Thomas T

    2007-01-09

    Widespread synchronous wildfires driven by climatic variation, such as those that swept western North America during 1996, 2000, and 2002, can result in major environmental and societal impacts. Understanding relationships between continental-scale patterns of drought and modes of sea surface temperatures (SSTs) such as El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), and Atlantic Multidecadal Oscillation (AMO) may explain how interannual to multidecadal variability in SSTs drives fire at continental scales. We used local wildfire chronologies reconstructed from fire scars on tree rings across western North America and independent reconstructions of SST developed from tree-ring widths at other sites to examine the relationships of multicentury patterns of climate and fire synchrony. From 33,039 annually resolved fire-scar dates at 238 sites (the largest paleofire record yet assembled), we examined forest fires at regional and subcontinental scales. Since 1550 CE, drought and forest fires covaried across the West, but in a manner contingent on SST modes. During certain phases of ENSO and PDO, fire was synchronous within broad subregions and sometimes asynchronous among those regions. In contrast, fires were most commonly synchronous across the West during warm phases of the AMO. ENSO and PDO were the main drivers of high-frequency variation in fire (interannual to decadal), whereas the AMO conditionally changed the strength and spatial influence of ENSO and PDO on wildfire occurrence at multidecadal scales. A current warming trend in AMO suggests that we may expect an increase in widespread, synchronous fires across the western U.S. in coming decades.

  14. Relationships between large-scale circulation patterns and carbon dioxide exchange by a deciduous forest

    NASA Astrophysics Data System (ADS)

    Zhang, Jingyong; Wu, Lingyun; Huang, Gang; Notaro, Michael

    2011-02-01

    In this study, we focus on a deciduous forest in central Massachusetts and investigate the relationships between global climate indices and CO2 exchange using eddy-covariance flux measurements from 1992 to 2007. Results suggest that large-scale circulation patterns influence the annual CO2 exchange in the forest through their effects on the local surface climate. Annual gross ecosystem exchange (GEE) in the forest is closely associated with spring El Niño-Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO), previous fall Atlantic Multidecadal Oscillation (AMO), and previous winter East Pacific-North Pacific (EP-NP) pattern. Annual net ecosystem exchange (NEE) responds to previous fall AMO and PDO, while annual respiration (R) is impacted by previous fall ENSO and Pacific/North American Oscillation (PNA). Regressions based on these relationships are developed to simulate the annual GEE, NEE, and R. To avoid problems of multicollinearity, we compute a "Composite Index for GEE (CIGEE)" based on a linear combination of spring ENSO and PDO, fall AMO, and winter EP-NP and a "Composite Index for R (CIR)" based on a linear combination of fall ENSO and PNA. CIGEE, CIR, and fall AMO and PDO can explain 41, 27, and 40% of the variance of the annual GEE, R, and NEE, respectively. We further apply the methodology to two other northern midlatitude forests and find that interannual variabilities in NEE of the two forests are largely controlled by large-scale circulation patterns. This study suggests that global climate indices provide the potential for predicting CO2 exchange variability in the northern midlatitude forests.

  15. miRNA oligonucleotide and sponge for miRNA-21 inhibition mediated by PEI-PLL in breast cancer therapy.

    PubMed

    Gao, Shiqian; Tian, Huayu; Guo, Ye; Li, Yuce; Guo, Zhaopei; Zhu, Xiaojuan; Chen, Xuesi

    2015-10-01

    MicroRNA-21 (miR-21) inhibition is a promising biological strategy for breast cancer therapy. However its application is limited by the lack of efficient miRNA inhibitor delivery systems. As a cationic polymer transfection material for nucleic acids, the poly (l-lysine)-modified polyethylenimine (PEI-PLL) copolymer combines the high transfection efficiency of polyethylenimine (PEI) and the good biodegradability of polyllysine (PLL). In this work, PEI-PLL was successfully synthesized and confirmed to transfect plasmid and oligonucleotide more effectively than PEI in MCF-7 cells (human breast cancer cells). In this regard, two kinds of miR-21 inhibitors, miR-21 sponge plasmid DNA (Sponge) and anti-miR-21 oligonucleotide (AMO), were transported into MCF-7 cells by PEI-PLL respectively. The miR-21 expression and the cellular physiology were determined post transfection. Compared with the negative control, PEI-PLL/Sponge or PEI-PLL/AMO groups exhibited lower miR-21 expression and cell viability. The anti-tumor mechanism of PEI-PLL/miR-21 inhibitors was further studied by cell cycle and western blot analyses. The results indicated that the miR-21 inhibition could induce the cell cycle arrest in G1 phase, upregulate the expression of Programmed Cell Death Protein 4 (PDCD4) and thus active the caspase-3 apoptosis pathway. Interestingly, the PEI-PLL/Sponge and PEI-PLL/AMO also sensitized the MCF-7 cells to anti-tumor drugs, doxorubicin (DOX) and cisplatin (CDDP). These results demonstrated that PEI-PLL/Sponge and PEI-PLL/AMO complexes would be two novel and promising gene delivery systems for breast cancer gene therapy based on miR-21 inhibition. This work was a combination of the high transfection efficiency of polyethylenimine (PEI), the good biodegradability of polyllysine (PLL) and the breast cancer-killing effect of miR-21 inhibitors. The poly (l-lysine)-modified polyethylenimine (PEI-PLL) copolymer was employed as the vector of miR-21 sponge plasmid DNA (Sponge) or

  16. AMoN Site Characterization Study: Phase I Field Measurements

    EPA Science Inventory

    Reduced inorganic nitrogen (NH3 + NH4+) is an increasingly important contributor to the total nitrogen deposition budget, yet the bi-directional nature of NH3 air-surface exchange makes incorporation of NH3 measurements into dry deposition schemes in field-scale and regional chem...

  17. Recent Developments in Advanced Automated Post-Processing at AMOS

    DTIC Science & Technology

    2014-09-01

    Borelli KJS Consulting Lisa Thompson Air Force Research Laboratory ABSTRACT A new automated post-processing system has been developed to...the existing algorithms in addition to the development of new data processing features. 6. REFERENCES 1 Matson, C.L., Beckner, C.C., Borelli , K

  18. Market Research in Public Education: AASA Keeps Its Ear to the Ground to Devise Strategic Messages

    ERIC Educational Resources Information Center

    Gross, Michael A.

    2004-01-01

    The importance of marketing research can be gauged simply through an examination of the wide range of organizations that use research. These organizations include small and large businesses, manufacturing and technology companies, policymakers, nonprofit organizations and government agencies. Marketing research focuses on the identification of…

  19. The Global Warming Hiatus Tied to the North Atlantic Oscillation and Its Prediction

    NASA Astrophysics Data System (ADS)

    Li, J.; Sun, C.

    2015-12-01

    The twentieth century Northern Hemisphere mean surface temperature (NHT) is characterized by a multidecadal warming-cooling-warming pattern followed by a flat trend since about 2000 (recent warming hiatus). Here we demonstrate that the multidcadal variability in NHT including the recent warming hiatus is tied to the North Atlantic Oscillation (NAO) and the NAO is implicated as a useful predictor of NHT multidecadal variability. Observational analysis shows that the NAO leads both the detrended NHT and oceanic Atlantic Multidecadal Oscillation (AMO) by 15-20 years. Theoretical analysis illuminates that the NAO precedes NHT multidecadal variability through its delayed effect on the AMO due to the large thermal inertia associated with slow oceanic processes. The CCSM4 model is employed to investigate possible physical mechanisms. The positive NAO forces the strengthening of the Atlantic meridional overturning circulation (AMOC) and induces a basin-wide uniform sea surface temperature (SST) warming that corresponds to the AMO. The SST field exhibits a delayed response to the preceding enhanced AMOC, and shows a pattern similar to the North Atlantic tripole (NAT), with SST warming in the northern North Atlantic and cooling in the southern part. This SST pattern (negative NAT phase) may lead to an atmospheric response that resembles the negative NAO phase, and subsequently the oscillation proceeds, but in the opposite sense. Based on these mechanisms, a simple delayed oscillator model is established to explain the quasi-periodic multidecadal variability of the NAO. The magnitude of the NAO forcing of the AMOC/AMO and the time delay of the AMOC/AMO feedback are two key parameters of the delayed oscillator. For a given set of parameters, the quasi 60-year cycle of the NAO can be well predicted. This delayed oscillator model is useful for understanding of the oscillatory mechanism of the NAO, which has potential for decadal predictions as well as the interpretation of proxy

  20. Effect of Modulation of ENSO by Decadal and Multidecadal Ocean-Atmospheric Oscillations on Continental US Streamflows

    NASA Astrophysics Data System (ADS)

    Singh, S.; Abebe, A.; Srivastava, P.; Chaubey, I.

    2017-12-01

    Evaluation of the influences of individual and coupled oceanic-atmospheric oscillations on streamflow at a regional scale in the United States is the focus of this study. The main climatic oscillations considered in this study are: El Niño Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), Atlantic Multidecadal Oscillation (AMO), and North Atlantic Oscillation (NAO). Unimpacted or minimally impacted by water management streamflow data from the Model Parameter Estimation Experiment (MOPEX) were used in this study. Two robust and novel non-parametric tests, namely, the rank based partial least square (PLS) and the Joint Rank Fit (JRFit) procedures were used to identify the individual and coupled effect of oscillations on streamflow across continental U.S. (CONUS), respectively. Moreover, the interactive effects of ENSO with decadal and multidecadal cycles were tested and quantified using the JRFit interaction test. The analysis of ENSO indicated higher streamflows during La Niña phase compared to the El Niño phase in Northwest, Northeast and the lower part of Ohio Valley while the opposite occurs for rest of the climatic regions in US. Two distinct climate regions (Northwest and Southeast) were identified from the PDO analysis where PDO negative phase results in increased streamflow than PDO positive phase. Consistent negative and positive correlated regions around the CONUS were identified for AMO and NAO, respectively. The interaction test of ENSO with decadal and multidecadal oscillations showed that El Niño is modulated by the negative phase of PDO and NAO, and the positive phase of AMO, respectively, in the Upper Midwest. However, La Niña is modulated by the positive phase of AMO and PDO in Ohio Valley and Northeast while in Southeast and the South it is modulated by AMO negative phase. Results of this study will assist water managers to understand the streamflow change patterns across the CONUS at decadal and multi-decadal time scales. The

  1. Niche specialization of terrestrial archaeal ammonia oxidizers.

    PubMed

    Gubry-Rangin, Cécile; Hai, Brigitte; Quince, Christopher; Engel, Marion; Thomson, Bruce C; James, Phillip; Schloter, Michael; Griffiths, Robert I; Prosser, James I; Nicol, Graeme W

    2011-12-27

    Soil pH is a major determinant of microbial ecosystem processes and potentially a major driver of evolution, adaptation, and diversity of ammonia oxidizers, which control soil nitrification. Archaea are major components of soil microbial communities and contribute significantly to ammonia oxidation in some soils. To determine whether pH drives evolutionary adaptation and community structure of soil archaeal ammonia oxidizers, sequences of amoA, a key functional gene of ammonia oxidation, were examined in soils at global, regional, and local scales. Globally distributed database sequences clustered into 18 well-supported phylogenetic lineages that dominated specific soil pH ranges classified as acidic (pH <5), acido-neutral (5 ≤ pH <7), or alkalinophilic (pH ≥ 7). To determine whether patterns were reproduced at regional and local scales, amoA gene fragments were amplified from DNA extracted from 47 soils in the United Kingdom (pH 3.5-8.7), including a pH-gradient formed by seven soils at a single site (pH 4.5-7.5). High-throughput sequencing and analysis of amoA gene fragments identified an additional, previously undiscovered phylogenetic lineage and revealed similar pH-associated distribution patterns at global, regional, and local scales, which were most evident for the five most abundant clusters. Archaeal amoA abundance and diversity increased with soil pH, which was the only physicochemical characteristic measured that significantly influenced community structure. These results suggest evolution based on specific adaptations to soil pH and niche specialization, resulting in a global distribution of archaeal lineages that have important consequences for soil ecosystem function and nitrogen cycling.

  2. Ammonia-Oxidizing β-Proteobacteria from the Oxygen Minimum Zone off Northern Chile▿

    PubMed Central

    Molina, Verónica; Ulloa, Osvaldo; Farías, Laura; Urrutia, Homero; Ramírez, Salvador; Junier, Pilar; Witzel, Karl-Paul

    2007-01-01

    The composition of ammonia-oxidizing bacteria from the β-Proteobacteria subclass (βAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, ∼200 to 44 μM O2) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, ≤10 μM O2) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated βAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from βAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured βAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like βAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient. PMID:17416686

  3. Ammonia-oxidizing beta-proteobacteria from the oxygen minimum zone off northern Chile.

    PubMed

    Molina, Verónica; Ulloa, Osvaldo; Farías, Laura; Urrutia, Homero; Ramírez, Salvador; Junier, Pilar; Witzel, Karl-Paul

    2007-06-01

    The composition of ammonia-oxidizing bacteria from the beta-Proteobacteria subclass (betaAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, approximately 200 to 44 microM O(2)) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, < or =10 microM O(2)) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated betaAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from betaAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured betaAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like betaAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient.

  4. A Tropical View of Atlantic Multidecadal SST Variability over the Last Two Millennia

    NASA Astrophysics Data System (ADS)

    Wurtzel, J. B.; Black, D. E.; Thunell, R.; Peterson, L. C.; Tappa, E. J.; Rahman, S.

    2011-12-01

    Instrumental and proxy-reconstructions show the existence of a 60-80 year periodicity in Atlantic sea surface temperature (SST), known as the Atlantic Multidecadal Oscillation (AMO). The AMO is correlated with circum-tropical Atlantic climate phenomena such as Sahel and Nordeste rainfall, as well as Atlantic hurricane patterns. Though it has been suggested that the AMO is controlled by thermohaline circulation, much debate exists as to whether the SST fluctuations are a result of anthropogenic forcing or natural climate variability. Our ability to address this issue has been limited by instrumental SST records that rarely extend back more than 50-100 years and proxy reconstructions that are largely terrestrial-based. Here we present a high-resolution marine sediment-derived reconstruction of seasonal tropical Atlantic SSTs from the Cariaco Basin spanning the past two millennia that is correlated with instrumental SSTs and the AMO for the period of overlap. The full record demonstrates that seasonality is largely controlled by variations in winter/spring SST. Wavelet analysis of the proxy data suggest that variability in the 60-80 year band evolved 250 years ago, while 40-60 year periodicities dominate earlier parts of the record. At least over the last millennia, multidecadal- and centennial- scale SST variability in the tropical Atlantic appears related to Atlantic meridional overturning circulation (AMOC) fluctuations and its associated northward heat transport that in turn may be driven by solar variability. An inverse correlation between the tropical proxy annual average SST record and Δ14C indicates that the tropics experienced positive SST anomalies during times of reduced solar activity, possibly as a result of decreased AMOC strength (Figure 1).

  5. A volcanic wind-stress origin of the Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Birkel, S. D.; Mayewski, P. A.; Maasch, K. A.; Auger, J.; Lyon, B.

    2016-12-01

    The Atlantic Multidecadal Oscillation (AMO) is a mode of sea-surface temperature (SST) variability in the North Atlantic that has significant impact on global climate. Most previous studies ascribe the origin of the AMO to oceanic mechanisms, and suggest only a limited role for the atmosphere. Here, we suggest that the AMO is manifested from basin-wide changes in surface wind stress that arise in response to episodic volcanic activity. Our interpretation is based on historical SST, reanalysis, and stratospheric aerosol optical thickness data, wherein it is evident that cool (warm) intervals of the AMO coincide with emergence of strong (weak) winds and high (low) volcanic activity. We find that SST excursions ultimately develop from atmospheric forcing as volcanic events project onto the North Atlantic Oscillation (NAO). A volcanic signature is particularly evident beneath the westerlies in the subpolar region south of Greenland, where several large SST excursions occur coincident with identifiable major eruptions. High latitude surface waters cool when NAO+ circulation, which includes a deepened Icelandic Low, draws cold flow out of the Labrador Sea and into the subpolar region. Important feedbacks that cause SST anomalies to spread across the basin include cloud cover, wind-driven upwelling, and entrainment of Saharan dust into the tropical easterlies. Finally, we speculate that cooling in the North Atlantic observed since 2011 could be linked to renewed volcanic activity over Iceland, namely from the eruptions of Grímsvötn (2011) and Bárðarbunga (2014). An important question remains how North Atlantic SST variability will evolve as atmospheric circulation becomes increasingly modified by human activity.

  6. Niche specialization of terrestrial archaeal ammonia oxidizers

    PubMed Central

    Gubry-Rangin, Cécile; Hai, Brigitte; Quince, Christopher; Engel, Marion; Thomson, Bruce C.; James, Phillip; Schloter, Michael; Griffiths, Robert I.; Prosser, James I.; Nicol, Graeme W.

    2011-01-01

    Soil pH is a major determinant of microbial ecosystem processes and potentially a major driver of evolution, adaptation, and diversity of ammonia oxidizers, which control soil nitrification. Archaea are major components of soil microbial communities and contribute significantly to ammonia oxidation in some soils. To determine whether pH drives evolutionary adaptation and community structure of soil archaeal ammonia oxidizers, sequences of amoA, a key functional gene of ammonia oxidation, were examined in soils at global, regional, and local scales. Globally distributed database sequences clustered into 18 well-supported phylogenetic lineages that dominated specific soil pH ranges classified as acidic (pH <5), acido-neutral (5≤ pH <7), or alkalinophilic (pH ≥7). To determine whether patterns were reproduced at regional and local scales, amoA gene fragments were amplified from DNA extracted from 47 soils in the United Kingdom (pH 3.5–8.7), including a pH-gradient formed by seven soils at a single site (pH 4.5–7.5). High-throughput sequencing and analysis of amoA gene fragments identified an additional, previously undiscovered phylogenetic lineage and revealed similar pH-associated distribution patterns at global, regional, and local scales, which were most evident for the five most abundant clusters. Archaeal amoA abundance and diversity increased with soil pH, which was the only physicochemical characteristic measured that significantly influenced community structure. These results suggest evolution based on specific adaptations to soil pH and niche specialization, resulting in a global distribution of archaeal lineages that have important consequences for soil ecosystem function and nitrogen cycling. PMID:22158986

  7. Ammonia-oxidizing archaea versus bacteria in two soil aquifer treatment systems.

    PubMed

    Ding, Kun; Wen, Xianghua; Li, Yuyang; Shen, Bo; Zhang, Bing

    2015-02-01

    So far, the contribution of ammonia-oxidizing archaea (AOA) to ammonia oxidation in wastewater treatment processes has not been well understood. In this study, two soil aquifer treatment (SATs) systems were built up to treat synthetic domestic wastewater (column 1) and secondary effluent (column 4), accomplishing an average of 95% ammonia removal during over 550 days of operation. Except at day 322, archaeal amoA genes always outnumbered bacterial amoA genes in both SATs as determined by using quantitative polymerase chain reaction (q-PCR). The ratios of archaeal amoA to 16S rRNA gene averaged at 0.70 ± 0.56 and 0.82 ± 0.62 in column 1 and column 4, respectively, indicating that all the archaea could be AOA carrying amoA gene in the SATs. The results of MiSeq-pyrosequencing targeting on archaeal and bacterial 16S rRNA genes with the primer pair of modified 515R/806R indicated that Nitrososphaera cluster affiliated with thaumarchaeal group I.1b was the dominant AOA species, while Nitrosospira cluster was the dominant ammonia-oxidizing bacteria (AOB). The statistical analysis showed significant relationship between AOA abundance (compared to AOB abundance) and inorganic and total nitrogen concentrations. Based on the mathematical model calculation for microbial growth, AOA had much greater capacity of ammonia oxidation as compared to the specific influent ammonia loading for AOA in the SATs, implying that a small fraction of the total AOA would actively work to oxidize ammonia chemoautotrophically whereas most of AOA would exhibit some level of functional redundancy. These results all pointed that AOA involved in microbial ammonia oxidation in the SATs.

  8. Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior.

    PubMed

    Bergauer, Kristin; Sintes, Eva; van Bleijswijk, Judith; Witte, Harry; Herndl, Gerhard J

    2013-06-01

    Recently, evidence suggests that dark CO2 fixation in the pelagic realm of the ocean does not only occur in the suboxic and anoxic water bodies but also in the oxygenated meso- and bathypelagic waters of the North Atlantic. To elucidate the significance and phylogeny of the key organisms mediating dark CO2 fixation in the tropical Atlantic, we quantified functional genes indicative for CO2 fixation. We used a Q-PCR-based assay targeting the bifunctional acetyl-CoA/propionyl-CoA carboxylase (accA subunit), a key enzyme powering inter alia the 3-hydroxypropionate/4-hydroxybutyrate cycle (HP/HB) and the archaeal ammonia monooxygenase (amoA). Quantification of accA-like genes revealed a consistent depth profile in the upper mesopelagial with increasing gene abundances from subsurface layers towards the oxygen minimum zone (OMZ), coinciding with an increase in archaeal amoA gene abundance. Gene abundance profiles of metabolic marker genes (accA, amoA) were correlated with thaumarchaeal 16S rRNA gene abundances as well as CO2 fixation rates to link the genetic potential to actual rate measurements. AccA gene abundances correlated with archaeal amoA gene abundance throughout the water column (r(2)  = 0.309, P < 0.0001). Overall, a substantial genetic predisposition of CO2 fixation was present in the dark realm of the tropical Atlantic in both Archaea and Bacteria. Hence, dark ocean CO2 fixation might be more widespread among prokaryotes inhabiting the oxygenated water column of the ocean's interior than hitherto assumed. © 2013 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  9. Multi-species coral Sr/Ca-based sea-surface temperature reconstruction using Orbicella faveolata and Siderastrea siderea from the Florida Straits

    USGS Publications Warehouse

    Flannery, Jennifer A.; Richey, Julie N.; Thirumalai, Kaustubh; Poore, Richard Z.; DeLong, Kristine L.

    2017-01-01

    We present new, monthly-resolved Sr/Ca-based sea-surface temperature (SST) records from two species of massive coral, Orbicella faveolata and Siderastrea siderea, from the Dry Tortugas National Park, FL, USA (DTNP). We combine these new records with published data from three additional S. siderea coral colonies to generate a 278-year long multi-species stacked Sr/Ca-SST record from DTNP. The composite record of mean annual Sr/Ca-SST at DTNP shows pronounced decadal-scale variability with a range of 1 to 2°C. Notable cool intervals in the Sr/Ca-derived SST lasting about a decade centered at ~1845, ~1935, and ~1965 are associated with reduced summer Sr/Ca-SST (monthly maxima < 29°C), and imply a reduction in the spatial extent of the Atlantic Warm Pool (AWP). There is significant coherence between the composite DTNP Sr/Ca-SST record and the Atlantic Multidecadal Oscillation (AMO) index, with the AMO lagging Sr/Ca-SST at DTNP by 9 years. Low frequency variability in the Gulf Stream surface transport, which originates near DTNP, may provide a link for the lagged relationship between multidecadal variability at DTNP and the AMO.

  10. Acetabular overcoverage in the horizontal plane: an underdiagnosed trigger of early hip arthritis. A CT scan study in young adults.

    PubMed

    Valera, Màrius; Ibáñez, Natalia; Sancho, Rogelio; Llauger, Jaume; Gich, Ignasi

    2018-01-01

    Acetabular overcoverage promotes hip osteoarthritis causing a pincer-type femoroacetabular impingement. Acetabular coverage in the horizontal plane is usually poorly defined in imaging studies and may be misdiagnosed. The goal of this study was to analyze the role of acetabular overcoverage measured in the frontal plane and in the horizontal plane by CT scan and to determine its relationship with other anatomic features in the onset of hip arthritis in young adults. We compared prospectively CT scans from two groups of adults of 55 years or younger: the patient group (n = 30) consisted of subjects with diagnosis of early hip arthritis (Tönnis Grade I or II) and the control group (n = 31) consisted of subjects with healthy hips. Two independent observers analyzed centre edge angle (CEA), acetabular anteversion angle (AAA), anterior sector acetabular angle (AASA), posterior sector acetabular angle (PASA), horizontal acetabular sector angle (HASA), femoral anteversion angle (FAVA), alpha angle (AA), and Mckibbin Instability Index (MI). Angles measuring the acetabular coverage on the horizontal plane (AASA, PASA and, HASA) were significantly higher in the patient group (p < 0.001, p = 0.03 and p < 0.001, respectively). Pearson's correlation coefficient showed a positive correlation between CEA and HASA in patients (r = 0.628) and in controls (r = 0.660). However, a high CEA (> 35º) was strongly associated with a high HASA (> 160º) in patients (p = 0.024) but not in controls (p = 0.21), suggesting that pincer should be simultaneously present in the horizontal and frontal plane to trigger hip degeneration. No significant association was detected between a high alpha angle (> 60º) and a high CEA (> 35º suggesting that a mixed pincer-cam aetiology was not prevalent in our series. Multivariate regression analysis showed the most significant predictors of degenerative joint disease were HASA (p = 0.008), AA (p = 0.048) and ASAA (p = 0

  11. Changes in N-Transforming Archaea and Bacteria in Soil during the Establishment of Bioenergy Crops

    PubMed Central

    Mao, Yuejian; Yannarell, Anthony C.; Mackie, Roderick I.

    2011-01-01

    Widespread adaptation of biomass production for bioenergy may influence important biogeochemical functions in the landscape, which are mainly carried out by soil microbes. Here we explore the impact of four potential bioenergy feedstock crops (maize, switchgrass, Miscanthus X giganteus, and mixed tallgrass prairie) on nitrogen cycling microorganisms in the soil by monitoring the changes in the quantity (real-time PCR) and diversity (barcoded pyrosequencing) of key functional genes (nifH, bacterial/archaeal amoA and nosZ) and 16S rRNA genes over two years after bioenergy crop establishment. The quantities of these N-cycling genes were relatively stable in all four crops, except maize (the only fertilized crop), in which the population size of AOB doubled in less than 3 months. The nitrification rate was significantly correlated with the quantity of ammonia-oxidizing archaea (AOA) not bacteria (AOB), indicating that archaea were the major ammonia oxidizers. Deep sequencing revealed high diversity of nifH, archaeal amoA, bacterial amoA, nosZ and 16S rRNA genes, with 229, 309, 330, 331 and 8989 OTUs observed, respectively. Rarefaction analysis revealed the diversity of archaeal amoA in maize markedly decreased in the second year. Ordination analysis of T-RFLP and pyrosequencing results showed that the N-transforming microbial community structures in the soil under these crops gradually differentiated. Thus far, our two-year study has shown that specific N-transforming microbial communities develop in the soil in response to planting different bioenergy crops, and each functional group responded in a different way. Our results also suggest that cultivation of maize with N-fertilization increases the abundance of AOB and denitrifiers, reduces the diversity of AOA, and results in significant changes in the structure of denitrification community. PMID:21935454

  12. Activity-Based Protein Profiling of Ammonia Monooxygenase in Nitrosomonas europaea

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bennett, Kristen; Sadler, Natalie C.; Wright, Aaron T.

    Nitrosomonas europaeais an aerobic nitrifying bacterium that oxidizes ammonia (NH 3) to nitrite (NO 2 ₋) through the sequential activities of ammonia monooxygenase (AMO) and hydroxylamine dehydrogenase (HAO). Many alkynes are mechanism-based inactivators of AMO, and here we describe an activity-based protein profiling method for this enzyme using 1,7-octadiyne (17OD) as a probe. Inactivation of NH 4 +-dependent O 2uptake byN. europaeaby 17OD was time- and concentration-dependent. The effects of 17OD were specific for ammonia-oxidizing activity, andde novoprotein synthesis was required to reestablish this activity after cells were exposed to 17OD. Cells were reacted with Alexa Fluor 647 azide usingmore » a copper-catalyzed azide-alkyne cycloaddition (CuAAC) (click) reaction, solubilized, and analyzed by SDS-PAGE and infrared (IR) scanning. A fluorescent 28-kDa polypeptide was observed for cells previously exposed to 17OD but not for cells treated with either allylthiourea or acetylene prior to exposure to 17OD or for cells not previously exposed to 17OD. The fluorescent polypeptide was membrane associated and aggregated when heated with β-mercaptoethanol and SDS. The fluorescent polypeptide was also detected in cells pretreated with other diynes, but not in cells pretreated with structural homologs containing a single ethynyl functional group. The membrane fraction from 17OD-treated cells was conjugated with biotin-azide and solubilized in SDS. Streptavidin affinity-purified polypeptides were on-bead trypsin-digested, and amino acid sequences of the peptide fragments were determined by liquid chromatography-mass spectrometry (LC-MS) analysis. Peptide fragments from AmoA were the predominant peptides detected in 17OD-treated samples. In-gel digestion and matrix-assisted laser desorption ionization–tandem time of flight (MALDI-TOF/TOF) analyses also confirmed that the fluorescent 28-kDa polypeptide was AmoA.« less

  13. Diagnosing and Reconstructing Real-World Hydroclimatic Dynamics from Time Sequenced Data: The Case of Saltwater Intrusion into Coastal Wetlands in Everglades National Park

    NASA Astrophysics Data System (ADS)

    Huffaker, R.; Munoz-Carpena, R.

    2016-12-01

    There are increasing calls to audit decision-support models used for environmental policy to ensure that they correspond with the reality facing policy makers. Modelers can establish correspondence by providing empirical evidence of real-world dynamic behavior that their models skillfully simulate. We present a pre-modeling diagnostic framework—based on nonlinear dynamic analysis—for detecting and reconstructing real-world environmental dynamics from observed time-sequenced data. Phenomenological (data-driven) modeling—based on machine learning regression techniques—extracts a set of ordinary differential equations governing empirically-diagnosed system dynamics from a single time series, or from multiple time series on causally-interacting variables. We apply the framework to investigate saltwater intrusion into coastal wetlands in Everglades National Park, Florida, USA. We test the following hypotheses posed in the literature linking regional hydrologic variables with global climatic teleconnections: (1) Sea level in Florida Bay drives well level and well salinity in the coastal Everglades; (2) Atlantic Multidecadal Oscillation (AMO) drives sea level, well level and well salinity; and (3) AMO and (El Niño Southern Oscillation) ENSO bi-causally interact. The thinking is that salt water intrusion links ocean-surface salinity with salinity of inland water sources, and sea level with inland water; that AMO and ENSO share a teleconnective relationship (perhaps through the atmosphere); and that AMO and ENSO both influence inland precipitation and thus well levels. Our results support these hypotheses, and we successfully construct a parsimonious phenomenological model that reproduces diagnosed nonlinear dynamics and system interactions. We propose that reconstructed data dynamics be used, along with other expert information, as a rigorous benchmark to guide specification and testing of hydrologic decision support models corresponding with real-world behavior.

  14. Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas

    PubMed Central

    Yu, Shaolan; Yao, Peng; Liu, Jiwen; Zhao, Bin; Zhang, Guiling; Zhao, Meixun; Yu, Zhigang; Zhang, Xiao-Hua

    2016-01-01

    The eastern China marginal seas (ECMS) are prominent examples of river-dominated ocean margins, whose most characteristic feature is the existence of isolated mud patches on sandy sediments. Ammonia-oxidizing prokaryotes play a crucial role in the nitrogen cycles of many marine environments, including marginal seas. However, few studies have attempted to address the distribution patterns of ammonia-oxidizing prokaryotes in mud deposits of these seas. The horizontal and vertical community composition and abundance of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were investigated in mud deposits of the South Yellow Sea (SYS) and the East China Sea (ECS) by using amoA clone libraries and quantitative PCR. The diversity of AOB was comparable or higher in the mud zone of SYS and lower in ECS when compared with AOA. Vertically, surface sediments had generally higher diversity of AOA and AOB than middle and bottom layers. Diversity of AOA and AOB showed significant correlation with latitude. Nitrosopumilus and Nitrosospira lineages dominated AOA and AOB communities, respectively. Both AOA and AOB assemblages exhibited greater variations across different sites than those among various depths at one site. The abundance of bacterial amoA was generally higher than that of archaeal amoA, and both of them decreased with depth. Niche differentiation, which was affected by dissolved oxygen, salinity, ammonia, and silicate (SiO32-), was observed between AOA and AOB and among different groups of them. The spatial distribution of AOA and AOB was significantly correlated with δ15NTN and SiO32-, and nitrate and δ13C, respectively. Both archaeal and bacterial amoA abundance correlated strongly with SiO32-. This study improves our understanding of spatial distribution of AOA and AOB in ecosystems featuring oceanic mud deposits. PMID:26904010

  15. Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas.

    PubMed

    Yu, Shaolan; Yao, Peng; Liu, Jiwen; Zhao, Bin; Zhang, Guiling; Zhao, Meixun; Yu, Zhigang; Zhang, Xiao-Hua

    2016-01-01

    The eastern China marginal seas (ECMS) are prominent examples of river-dominated ocean margins, whose most characteristic feature is the existence of isolated mud patches on sandy sediments. Ammonia-oxidizing prokaryotes play a crucial role in the nitrogen cycles of many marine environments, including marginal seas. However, few studies have attempted to address the distribution patterns of ammonia-oxidizing prokaryotes in mud deposits of these seas. The horizontal and vertical community composition and abundance of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were investigated in mud deposits of the South Yellow Sea (SYS) and the East China Sea (ECS) by using amoA clone libraries and quantitative PCR. The diversity of AOB was comparable or higher in the mud zone of SYS and lower in ECS when compared with AOA. Vertically, surface sediments had generally higher diversity of AOA and AOB than middle and bottom layers. Diversity of AOA and AOB showed significant correlation with latitude. Nitrosopumilus and Nitrosospira lineages dominated AOA and AOB communities, respectively. Both AOA and AOB assemblages exhibited greater variations across different sites than those among various depths at one site. The abundance of bacterial amoA was generally higher than that of archaeal amoA, and both of them decreased with depth. Niche differentiation, which was affected by dissolved oxygen, salinity, ammonia, and silicate (SiO[Formula: see text]), was observed between AOA and AOB and among different groups of them. The spatial distribution of AOA and AOB was significantly correlated with δ(15)NTN and SiO[Formula: see text], and nitrate and δ(13)C, respectively. Both archaeal and bacterial amoA abundance correlated strongly with SiO[Formula: see text]. This study improves our understanding of spatial distribution of AOA and AOB in ecosystems featuring oceanic mud deposits.

  16. Vertical Segregation and Phylogenetic Characterization of Ammonia-Oxidizing Bacteria and Archaea in the Sediment of a Freshwater Aquaculture Pond

    PubMed Central

    Lu, Shimin; Liu, Xingguo; Ma, Zhuojun; Liu, Qigen; Wu, Zongfan; Zeng, Xianlei; Shi, Xu; Gu, Zhaojun

    2016-01-01

    Pond aquaculture is the major freshwater aquaculture method in China. Ammonia-oxidizing communities inhabiting pond sediments play an important role in controlling culture water quality. However, the distribution and activities of ammonia-oxidizing microbial communities along sediment profiles are poorly understood in this specific environment. Vertical variations in the abundance, transcription, potential ammonia oxidizing rate, and community composition of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in sediment samples (0–50 cm depth) collected from a freshwater aquaculture pond were investigated. The concentrations of the AOA amoA gene were higher than those of the AOB by an order of magnitude, which suggested that AOA, as opposed to AOB, were the numerically predominant ammonia-oxidizing organisms in the surface sediment. This could be attributed to the fact that AOA are more resistant to low levels of dissolved oxygen. However, the concentrations of the AOB amoA mRNA were higher than those of the AOA by 2.5- to 39.9-fold in surface sediments (0–10 cm depth), which suggests that the oxidation of ammonia was mainly performed by AOB in the surface sediments, and by AOA in the deeper sediments, where only AOA could be detected. Clone libraries of AOA and AOB amoA sequences indicated that the diversity of AOA and AOB decreased with increasing depth. The AOB community consisted of two groups: the Nitrosospira and Nitrosomonas clusters, and Nitrosomonas were predominant in the freshwater pond sediment. All AOA amoA gene sequences in the 0–2 cm deep sediment were grouped into the Nitrososphaera cluster, while other AOA sequences in deeper sediments (10–15 and 20–25 cm depths) were grouped into the Nitrosopumilus cluster. PMID:26834709

  17. Activity-Based Protein Profiling of Ammonia Monooxygenase in Nitrosomonas europaea

    PubMed Central

    Bennett, Kristen; Sadler, Natalie C.; Wright, Aaron T.; Yeager, Chris

    2016-01-01

    Nitrosomonas europaea is an aerobic nitrifying bacterium that oxidizes ammonia (NH3) to nitrite (NO2−) through the sequential activities of ammonia monooxygenase (AMO) and hydroxylamine dehydrogenase (HAO). Many alkynes are mechanism-based inactivators of AMO, and here we describe an activity-based protein profiling method for this enzyme using 1,7-octadiyne (17OD) as a probe. Inactivation of NH4+-dependent O2 uptake by N. europaea by 17OD was time- and concentration-dependent. The effects of 17OD were specific for ammonia-oxidizing activity, and de novo protein synthesis was required to reestablish this activity after cells were exposed to 17OD. Cells were reacted with Alexa Fluor 647 azide using a copper-catalyzed azide-alkyne cycloaddition (CuAAC) (click) reaction, solubilized, and analyzed by SDS-PAGE and infrared (IR) scanning. A fluorescent 28-kDa polypeptide was observed for cells previously exposed to 17OD but not for cells treated with either allylthiourea or acetylene prior to exposure to 17OD or for cells not previously exposed to 17OD. The fluorescent polypeptide was membrane associated and aggregated when heated with β-mercaptoethanol and SDS. The fluorescent polypeptide was also detected in cells pretreated with other diynes, but not in cells pretreated with structural homologs containing a single ethynyl functional group. The membrane fraction from 17OD-treated cells was conjugated with biotin-azide and solubilized in SDS. Streptavidin affinity-purified polypeptides were on-bead trypsin-digested, and amino acid sequences of the peptide fragments were determined by liquid chromatography-mass spectrometry (LC-MS) analysis. Peptide fragments from AmoA were the predominant peptides detected in 17OD-treated samples. In-gel digestion and matrix-assisted laser desorption ionization–tandem time of flight (MALDI-TOF/TOF) analyses also confirmed that the fluorescent 28-kDa polypeptide was AmoA. PMID:26826234

  18. Niche partitioning of marine group I Crenarchaeota in the euphotic and upper mesopelagic zones of the East China Sea.

    PubMed

    Hu, Anyi; Jiao, Nianzhi; Zhang, Rui; Yang, Zao

    2011-11-01

    Marine group I Crenarchaeota (MGI) represents a ubiquitous and numerically predominant microbial population in marine environments. An understanding of the spatial dynamics of MGI and its controlling mechanisms is essential for an understanding of the role of MGI in energy and element cycling in the ocean. In the present study, we investigated the diversity and abundance of MGI in the East China Sea (ECS) by analysis of crenarchaeal 16S rRNA gene, the ammonia monooxygenase gene amoA, and the biotin carboxylase gene accA. Quantitative PCR analyses revealed that these genes were higher in abundance in the mesopelagic than in the euphotic zone. In addition, the crenarchaeal amoA gene was positively correlated with the copy number of the MGI 16S rRNA gene, suggesting that most of the MGI in the ECS are nitrifiers. Furthermore, the ratios of crenarchaeal accA to amoA or to MGI 16S rRNA genes increased from the euphotic to the mesopelagic zone, suggesting that the role of MGI in carbon cycling may change from the epipelagic to the mesopelagic zones. Denaturing gradient gel electrophoretic profiling of the 16S rRNA genes revealed depth partitioning in MGI community structures. Clone libraries of the crenarchaeal amoA and accA genes showed both "shallow" and "deep" groups, and their relative abundances varied in the water column. Ecotype simulation analysis revealed that MGI in the upper ocean could diverge into special ecotypes associated with depth to adapt to the light gradient across the water column. Overall, our results showed niche partitioning of the MGI population and suggested a shift in their ecological functions between the euphotic and mesopelagic zones of the ECS.

  19. 78 FR 51186 - Proposed Consent Decree, Clean Air Act Citizen Suit

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-20

    ... Houston, California Communities Against Toxics, Coalition For A Safe Environment, Community In-Power and Development Association, Del Amo Action Committee, Environmental Integrity Project, Louisiana Bucket Brigade...

  20. The Extrapolation of High Altitude Solar Cell I(V) Characteristics to AM0

    NASA Technical Reports Server (NTRS)

    Snyder, David B.; Scheiman, David A.; Jenkins, Phillip P.; Reinke, William; Blankenship, Kurt; Demers, James

    2007-01-01

    The high altitude aircraft method has been used at NASA GRC since the early 1960's to calibrate solar cell short circuit current, ISC, to Air Mass Zero (AMO). This method extrapolates ISC to AM0 via the Langley plot method, a logarithmic extrapolation to 0 air mass, and includes corrections for the varying Earth-Sun distance to 1.0 AU and compensating for the non-uniform ozone distribution in the atmosphere. However, other characteristics of the solar cell I(V) curve do not extrapolate in the same way. Another approach is needed to extrapolate VOC and the maximum power point (PMAX) to AM0 illumination. As part of the high altitude aircraft method, VOC and PMAX can be obtained as ISC changes during the flight. These values can then the extrapolated, sometimes interpolated, to the ISC(AM0) value. This approach should be valid as long as the shape of the solar spectra in the stratosphere does not change too much from AMO. As a feasibility check, the results are compared to AMO I(V) curves obtained using the NASA GRC X25 based multi-source simulator. This paper investigates the approach on both multi-junction solar cells and sub-cells.

  1. Seasonal effects in a lake sediment archaeal community of the Brazilian Savanna.

    PubMed

    Rodrigues, Thiago; Catão, Elisa; Bustamante, Mercedes M C; Quirino, Betania F; Kruger, Ricardo H; Kyaw, Cynthia M

    2014-01-01

    The Cerrado is a biome that corresponds to 24% of Brazil's territory. Only recently microbial communities of this biome have been investigated. Here we describe for the first time the diversity of archaeal communities from freshwater lake sediments of the Cerrado in the dry season and in the transition period between the dry and rainy seasons, when the first rains occur. Gene libraries were constructed, using Archaea-specific primers for the 16S rRNA and amoA genes. Analysis revealed marked differences between the archaeal communities found in the two seasons. I.1a and I.1c Thaumarchaeota were found in greater numbers in the transition period, while MCG Archaea was dominant on the dry season. Methanogens were only found in the dry season. Analysis of 16S rRNA sequences revealed lower diversity on the transition period. We detected archaeal amoA sequences in both seasons, but there were more OTUs during the dry season. These sequences were within the same cluster as Nitrosotalea devanaterra's amoA gene. The principal coordinate analysis (PCoA) test revealed significant differences between samples from different seasons. These results provide information on archaeal diversity in freshwater lake sediments of the Cerrado and indicates that rain is likely a factor that impacts these communities.

  2. Differences of Longitudinal Chromatic Aberration (LCA) between Eyes with Intraocular Lenses from Different Manufacturers

    PubMed Central

    Nakajima, Masashi; Hiraoka, Takahiro; Yamamoto, Toshiya; Takagi, Seiu; Hirohara, Yoko; Oshika, Tetsuro

    2016-01-01

    Several researchers have studied the longitudinal chromatic aberration (LCA) of eyes implanted with an intraocular lens (IOL). We investigated the LCA of eyes implanted with yellow-colored IOLs from three different manufacturers: Alcon Inc., HOYA Corp., and AMO Inc. The number of subjects was 11, 16, and 16, respectively. The LCA of eyes implanted with SN60WF and SN60AT (Alcon Inc.), and with XY-1 (HOYA Corp.), was the same as that of phakic eyes. The LCA of eyes with ZCB00V (AMO Inc.) was smaller than that of phakic eyes. The LCA of eyes implanted with Alcon’s and HOYA’s IOLs, but not the LCA of eyes implanted with AMO’s IOLs, was positively correlated with the powers of the IOLs. We also performed simulations to verify the impacts of LCA on visual performance for 4-mm pupil diameter; the simulations were a polychromatic modulation transfer function (MTF) and a visual Strehl ratio computed on the basis of an optical transfer function (VSOTF). We concluded that the differences between the LCA of different manufacturers do not affect visual performances when some extent of higher-order aberration (HOA) exists. The smaller HOA of AMO IOLs may enhance visual performance. PMID:27258141

  3. Using the Convergent Cross Mapping method to test causality between Arctic Oscillation / North Atlantic Oscillation and Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Gutowska, Dorota; Piskozub, Jacek

    2017-04-01

    There is a vast literature body on the climate indices and processes they represent. A large part of it deals with "teleconnections" or causal relations between them. However until recently time lagged correlations was the best tool of studying causation. However no correlation (even lagged) proves causation. We use a recently developed method of studying casual relations between short time series, Convergent Cross Mapping (CCM), to search for causation between the atmospheric (AO and NAO) and oceanic (AMO) indices. The version we have chosen (available as an R language package rEDM) allows for comparing time series with time lags. This work builds on previous one, showing with time-lagged correlations that AO/NAO precedes AMO by about 15 years and at the same time is preceded by AMO (but with an inverted sign) also by the same amount of time. This behaviour is identical to the relationship of a sine and cosine with the same period. This may suggest that the multidecadal oscillatory parts of the atmospheric and oceanic indices represent the same global-scale set of processes. In other words they may be symptoms of the same oscillation. The aim of present study is to test this hypothesis with a tool created specially for discovering causal relationships in dynamic systems.

  4. The Bacterial Communities of Full-Scale Biologically Active, Granular Activated Carbon Filters Are Stable and Diverse and Potentially Contain Novel Ammonia-Oxidizing Microorganisms

    PubMed Central

    Hope Wilkinson, Katheryn; Strait, Jacqueline M.; Hozalski, Raymond M.; Sadowksy, Michael J.; Hamilton, Matthew J.

    2015-01-01

    The bacterial community composition of the full-scale biologically active, granular activated carbon (BAC) filters operated at the St. Paul Regional Water Services (SPRWS) was investigated using Illumina MiSeq analysis of PCR-amplified 16S rRNA gene fragments. These bacterial communities were consistently diverse (Shannon index, >4.4; richness estimates, >1,500 unique operational taxonomic units [OTUs]) throughout the duration of the 12-month study period. In addition, only modest shifts in the quantities of individual bacterial populations were observed; of the 15 most prominent OTUs, the most highly variable population (a Variovorax sp.) modulated less than 13-fold over time and less than 8-fold from filter to filter. The most prominent population in the profiles was a Nitrospira sp., representing 13 to 21% of the community. Interestingly, very few of the known ammonia-oxidizing bacteria (AOB; <0.07%) and no ammonia-oxidizing Archaea were detected in the profiles. Quantitative PCR of amoA genes, however, suggested that AOB were prominent in the bacterial communities (amoA/16S rRNA gene ratio, 1 to 10%). We conclude, therefore, that the BAC filters at the SPRWS potentially contained significant numbers of unidentified and novel ammonia-oxidizing microorganisms that possess amoA genes similar to those of previously described AOB. PMID:26209671

  5. Possible connections of the opposite trends in Arctic and Antarctic sea-ice cover.

    PubMed

    Yu, Lejiang; Zhong, Shiyuan; Winkler, Julie A; Zhou, Mingyu; Lenschow, Donald H; Li, Bingrui; Wang, Xianqiao; Yang, Qinghua

    2017-04-05

    Sea ice is an important component of the global climate system and a key indicator of climate change. A decreasing trend in Arctic sea-ice concentration is evident in recent years, whereas Antarctic sea-ice concentration exhibits a generally increasing trend. Various studies have investigated the underlying causes of the observed trends for each region, but possible linkages between the regional trends have not been studied. Here, we hypothesize that the opposite trends in Arctic and Antarctic sea-ice concentration may be linked, at least partially, through interdecadal variability of the Pacific Decadal Oscillation (PDO) and the Atlantic Multidecadal Oscillation (AMO). Although evaluation of this hypothesis is constrained by the limitations of the sea-ice cover record, preliminary statistical analyses of one short-term and two long-term time series of observed and reanalysis sea-ice concentrations data suggest the possibility of the hypothesized linkages. For all three data sets, the leading mode of variability of global sea-ice concentration is positively correlated with the AMO and negatively correlated with the PDO. Two wave trains related to the PDO and the AMO appear to produce anomalous surface-air temperature and low-level wind fields in the two polar regions that contribute to the opposite changes in sea-ice concentration.

  6. Three centuries of winter temperature change on the southeastern Tibetan Plateau and its relationship with the Atlantic Multidecadal Oscillation

    NASA Astrophysics Data System (ADS)

    Shi, Shiyuan; Li, Jinbao; Shi, Jiangfeng; Zhao, Yesi; Huang, Gang

    2017-08-01

    Long-term, high-resolution proxy records containing cold season temperature signals are scarce on the southeastern Tibetan Plateau (TP), limiting our understanding of regional climate and the potential driving forces. In this study, we present a nearly three centuries long reconstruction of winter (December-February) mean temperature for the central Hengduan Mountains, southeastern TP. The reconstruction is derived from a composite tree-ring width chronology of Pinus yunnanensis Franch from two high elevation sites (>3000 m above sea level). Our reconstruction passes all standard calibration-verification schemes and explains nearly 73 % of the variance of the original instrumental data. However, we were constrained to calibrate our full period (1718-2013) reconstruction of December-February mean temperature on the calibration period from 1959 to 1992 only, due to a decrease in temperature sensitivity of tree-ring index exhibited after 1992. Spatial correlation analysis shows that our reconstruction represents large-scale temperature variations in southwest China and the eastern TP. Our reconstructed December-February mean temperature shows a close association with the Atlantic Multidecadal Oscillation (AMO) over the past three centuries, with warm (cold) periods coinciding with the positive (negative) phases of the AMO. This persistent relationship suggests that the AMO may have been a key driver of multidecadal winter temperature variations on the southeastern TP.

  7. Possible connections of the opposite trends in Arctic and Antarctic sea-ice cover

    PubMed Central

    Yu, Lejiang; Zhong, Shiyuan; Winkler, Julie A.; Zhou, Mingyu; Lenschow, Donald H.; Li, Bingrui; Wang, Xianqiao; Yang, Qinghua

    2017-01-01

    Sea ice is an important component of the global climate system and a key indicator of climate change. A decreasing trend in Arctic sea-ice concentration is evident in recent years, whereas Antarctic sea-ice concentration exhibits a generally increasing trend. Various studies have investigated the underlying causes of the observed trends for each region, but possible linkages between the regional trends have not been studied. Here, we hypothesize that the opposite trends in Arctic and Antarctic sea-ice concentration may be linked, at least partially, through interdecadal variability of the Pacific Decadal Oscillation (PDO) and the Atlantic Multidecadal Oscillation (AMO). Although evaluation of this hypothesis is constrained by the limitations of the sea-ice cover record, preliminary statistical analyses of one short-term and two long-term time series of observed and reanalysis sea-ice concentrations data suggest the possibility of the hypothesized linkages. For all three data sets, the leading mode of variability of global sea-ice concentration is positively correlated with the AMO and negatively correlated with the PDO. Two wave trains related to the PDO and the AMO appear to produce anomalous surface-air temperature and low-level wind fields in the two polar regions that contribute to the opposite changes in sea-ice concentration. PMID:28378830

  8. Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile.

    PubMed

    Höfferle, Špela; Nicol, Graeme W; Pal, Levin; Hacin, Janez; Prosser, James I; Mandić-Mulec, Ines

    2010-11-01

    Oxidation of ammonia, the first step in nitrification, is carried out in soil by bacterial and archaeal ammonia oxidizers and recent studies suggest possible selection for the latter in low-ammonium environments. In this study, we investigated the selection of ammonia-oxidizing archaea and bacteria in wetland soil vertical profiles at two sites differing in terms of the ammonium supply rate, but not significantly in terms of the groundwater level. One site received ammonium through decomposition of organic matter, while the second, polluted site received a greater supply, through constant leakage of an underground septic tank. Soil nitrification potential was significantly greater at the polluted site. Quantification of amoA genes demonstrated greater abundance of bacterial than archaeal amoA genes throughout the soil profile at the polluted site, whereas bacterial amoA genes at the unpolluted site were below the detection limit. At both sites, archaeal, but not the bacterial community structure was clearly stratified with depth, with regard to the soil redox potential imposed by groundwater level. However, depth-related changes in the archaeal community structure may also be associated with physiological functions other than ammonia oxidation. © 2010 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  9. Glycogen Reduction in Myotubes of Late-Onset Pompe Disease Patients Using Antisense Technology.

    PubMed

    Goina, Elisa; Peruzzo, Paolo; Bembi, Bruno; Dardis, Andrea; Buratti, Emanuele

    2017-09-06

    Glycogen storage disease type II (GSDII) is a lysosomal disorder caused by the deficient activity of acid alpha-glucosidase (GAA) enzyme, leading to the accumulation of glycogen within the lysosomes. The disease has been classified in infantile and late-onset forms. Most late-onset patients share a splicing mutation c.-32-13T > G in intron 1 of the GAA gene that prevents efficient recognition of exon 2 by the spliceosome. In this study, we have mapped the splicing silencers of GAA exon 2 and developed antisense morpholino oligonucleotides (AMOs) to inhibit those regions and rescue normal splicing in the presence of the c.-32-13T > G mutation. Using a minigene approach and patient fibroblasts, we successfully increased inclusion of exon 2 in the mRNA and GAA enzyme production by targeting a specific silencer with a combination of AMOs. Most importantly, the use of these AMOs in patient myotubes results in a decreased accumulation of glycogen. To our knowledge, this is the only therapeutic approach resulting in a decrease of glycogen accumulation in patient tissues beside enzyme replacement therapy (ERT) and TFEB overexpression. As a result, it may represent a highly novel and promising therapeutic line for GSDII. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

  10. Shifts in the abundance and community structure of soil ammonia oxidizers in a wet sclerophyll forest under long-term prescribed burning.

    PubMed

    Long, Xi-En; Chen, Chengrong; Xu, Zhihong; He, Ji-Zheng

    2014-02-01

    Fire shapes global biome distribution and promotes the terrestrial biogeochemical cycles. Ammonia-oxidizing bacteria (AOB) and archaea (AOA) play a vital role in the biogeochemical cycling of nitrogen (N). However, behaviors of AOB and AOA under long-term prescribed burning remain unclear. This study was to examine how fire affected the abundances and communities of soil AOB and AOA. A long-term repeated forest fire experiment with three burning treatments (never burnt, B0; biennially burnt, B2; and quadrennially burnt, B4) was used in this study. The abundances and community structure of soil AOB and AOA were determined using quantitative PCR, restriction fragment length polymorphism and clone library. More frequent fires (B2) increased the abundance of bacterium amoA gene, but tended to decrease archaeal amoA genes. Fire also modified the composition of AOA and AOB communities. Canonical correspondence analysis showed soil pH and dissolved organic C (DOC) strongly affected AOB genotypes, while nitrate-N and DOC shaped the AOA distribution. The increased abundance of bacterium amoA gene by fires may imply an important role of AOB in nitrification in fire-affected soils. The fire-induced shift in the community composition of AOB and AOA demonstrates that fire can disturb nutrient cycles. © 2013.

  11. Influence of different Sinorhizobium meliloti inocula on abundance of genes involved in nitrogen transformations in the rhizosphere of alfalfa (Medicago sativa L.).

    PubMed

    Babić, Katarina Huić; Schauss, Kristina; Hai, Brigitte; Sikora, Sanja; Redzepović, Sulejman; Radl, Viviane; Schloter, Michael

    2008-11-01

    Inoculation of leguminous seeds with selected rhizobial strains is practised in agriculture to ameliorate the plant yield by enhanced root nodulation and nitrogen uptake of the plant. However, effective symbiosis between legumes and rhizobia does not only depend on the capacity of nitrogen fixation but also on the entire nitrogen turnover in the rhizosphere. We investigated the influence of seed inoculation with two indigenous Sinorhizobium meliloti strains exhibiting different efficiency concerning plant growth promotion on nitrogen turnover processes in the rhizosphere during the growth of alfalfa. Quantification of six target genes (bacterial amoA, nirK, nirS, nosZ, nifH and archaeal amoA) within the nitrogen cycle was performed in rhizosphere samples before nodule formation, at bud development and at the late flowering stage. The results clearly demonstrated that effectiveness of rhizobial inocula is related to abundance of nifH genes in the late flowering phase of alfalfa. Moreover, other genes involved in nitrogen turnover had been affected by the inocula, e.g. higher numbers of amoA copies were observed during flowering when the more effective strain had been inoculated. However, the respective gene abundances differed overall to a greater extent between the three plant development stages than between the inoculation variants.

  12. Response of ammonia oxidizing bacteria and archaea to acute zinc stress and different moisture regimes in soil.

    PubMed

    Vasileiadis, Sotirios; Coppolecchia, Damiano; Puglisi, Edoardo; Balloi, Annalisa; Mapelli, Francesca; Hamon, Rebecca E; Daffonchio, Daniele; Trevisan, Marco

    2012-11-01

    Ammonia oxidation has been intensively studied for its sensitivity to environmental shifts and stresses. However, acute stress effects on the occurrence and composition of ammonia oxidizing bacteria (AOB) and archaea (AOA) based on expression of related molecular markers in complex soil environments have been to an extent overlooked, particularly concerning transient but commonly occurring environmental changes like soil moisture shifts. The present study investigates the responses of AOB and AOA to moisture shifts and high Zn soil content. AmoA gene copies and transcripts of AOB and AOA along with potential nitrification activity were measured in a soil microcosm approach for investigating the referred environmental shifts. Moisture change from 87 to 50 % of the water holding capacity caused a ~99 % reduction of AOB but not of AOA amoA transcripts that did not change significantly. Increasing applied zinc concentrations resulted in a reduction of potential nitrification rates and negatively affected studied gene expressions of both AOB and AOA, with AOB being more responsive. Both 16 S rRNA and amoA transcripts of AOB had an inverse relation to the applied zinc, indicating a gradual loss in total cell activity. Our results suggest the existence of pronounced differences between AOB and AOA concerning ammonia oxidation activity.

  13. Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea

    PubMed Central

    Lu, Lu; Han, Wenyan; Zhang, Jinbo; Wu, Yucheng; Wang, Baozhan; Lin, Xiangui; Zhu, Jianguo; Cai, Zucong; Jia, Zhongjun

    2012-01-01

    The hydrolysis of urea as a source of ammonia has been proposed as a mechanism for the nitrification of ammonia-oxidizing bacteria (AOB) in acidic soil. The growth of Nitrososphaera viennensis on urea suggests that the ureolysis of ammonia-oxidizing archaea (AOA) might occur in natural environments. In this study, 15N isotope tracing indicates that ammonia oxidation occurred upon the addition of urea at a concentration similar to the in situ ammonium content of tea orchard soil (pH 3.75) and forest soil (pH 5.4) and was inhibited by acetylene. Nitrification activity was significantly stimulated by urea fertilization and coupled well with abundance changes in archaeal amoA genes in acidic soils. Pyrosequencing of 16S rRNA genes at whole microbial community level demonstrates the active growth of AOA in urea-amended soils. Molecular fingerprinting further shows that changes in denaturing gradient gel electrophoresis fingerprint patterns of archaeal amoA genes are paralleled by nitrification activity changes. However, bacterial amoA and 16S rRNA genes of AOB were not detected. The results strongly suggest that archaeal ammonia oxidation is supported by hydrolysis of urea and that AOA, from the marine Group 1.1a-associated lineage, dominate nitrification in two acidic soils tested. PMID:22592820

  14. Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea.

    PubMed

    Lu, Lu; Han, Wenyan; Zhang, Jinbo; Wu, Yucheng; Wang, Baozhan; Lin, Xiangui; Zhu, Jianguo; Cai, Zucong; Jia, Zhongjun

    2012-10-01

    The hydrolysis of urea as a source of ammonia has been proposed as a mechanism for the nitrification of ammonia-oxidizing bacteria (AOB) in acidic soil. The growth of Nitrososphaera viennensis on urea suggests that the ureolysis of ammonia-oxidizing archaea (AOA) might occur in natural environments. In this study, (15)N isotope tracing indicates that ammonia oxidation occurred upon the addition of urea at a concentration similar to the in situ ammonium content of tea orchard soil (pH 3.75) and forest soil (pH 5.4) and was inhibited by acetylene. Nitrification activity was significantly stimulated by urea fertilization and coupled well with abundance changes in archaeal amoA genes in acidic soils. Pyrosequencing of 16S rRNA genes at whole microbial community level demonstrates the active growth of AOA in urea-amended soils. Molecular fingerprinting further shows that changes in denaturing gradient gel electrophoresis fingerprint patterns of archaeal amoA genes are paralleled by nitrification activity changes. However, bacterial amoA and 16S rRNA genes of AOB were not detected. The results strongly suggest that archaeal ammonia oxidation is supported by hydrolysis of urea and that AOA, from the marine Group 1.1a-associated lineage, dominate nitrification in two acidic soils tested.

  15. Community and functional shifts in ammonia oxidizers across terrestrial and marine (soil/sediment) boundaries in two coastal Bay ecosystems.

    PubMed

    Zhang, Li-Mei; Duff, Aoife M; Smith, Cindy J

    2018-04-24

    Terrestrial-marine boundaries are significant sites of biogeochemical activity with delineated gradients from land to sea. While niche differentiation of ammonia-oxidizing archaea (AOA) and bacteria (AOB) driven by pH and nitrogen is well known, the patterns and environmental drivers of AOA and AOB community structure and activity across soil-sediment boundaries have not yet been determined. In this study, nitrification potential rate, community composition and transcriptional activity of AOA and AOB in soil, soil/sediment interface and sediments of two coastal Bays were characterized using a combination of field investigations and microcosm incubations. At DNA level, amoA gene abundances of AOA were significantly greater than AOB in soil, while in sediments AOB were significantly more abundant than AOA, but at the soil/sediment interface there were equal numbers of AOA and AOB amoA genes. Microcosm incubations provided further evidence, through qPCR and DGGE-sequencing analysis of amoA transcripts, that AOA were active in soil, AOB in sediment and both AOA and AOB were active at the soil/sediment interface. The AOA and AOB community composition shifted across the coastal soil-interface-sediment gradient with salinity and pH identified as major environmental drivers. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

  16. Manure fertilization alters the population of ammonia-oxidizing bacteria rather than ammonia-oxidizing archaea in a paddy soil.

    PubMed

    Wang, Yu; Zhu, Guibing; Song, Liyan; Wang, Shanyun; Yin, Chengqing

    2014-03-01

    Manure fertilizers are widely used in agriculture and highly impacted the soil microbial communities such as ammonia oxidizers. However, the knowledge on the communities of archaeal versus bacterial ammonia oxidizers in paddy soil affected by manure fertilization remains largely unknown, especially for a long-term influence. In present work, the impact of manure fertilization on the population of ammonia oxidizers, related potential nitrification rates (PNRs) and the key factors manipulating the impact were investigated through studying two composite soil cores (long-term fed with manure fertilization versus undisturbed). Moreover, soil incubated with NH(4)(+) for 5 weeks was designed to verify the field research. The results showed that the copy numbers of bacterial amoA gene in the manure fed soil were significant higher than those in the unfed soil (p < 0.05), suggesting a clear stimulating effect of long-term manure fertilization on the population of ammonia-oxidizing bacteria (AOB). The detected PNRs in the manure fed soil core (14-218 nmol L(-1)  N g(-1)  h(-1)) were significant higher than those in the unfed soil core (5-72 nmol L(-1)  N g(-1)  h(-1) ; p < 0.05). Highly correlations between the PNRs and the bacterial amoA gene copies rather than archaeal amoA gene were observed, indicating strong nitrification capacity related to bacterial ammonia oxidizers. The NH(4)(+) -N significantly correlated to the abundance of AOB (p < 0.01) and explained 96.1% of the environmental variation, showing the NH(4)(+) -N was the main factor impacting the population of AOB. The incubation experiment demonstrated a clear increase of the bacterial amoA gene abundance (2.0 × 10(6) to 8.4 × 10(6)  g(-1) d.w.s. and 1.6 × 10(4) to 4.8 × 10(5)  g(-1) d.w.s.) in both soil but not for the archaeal amoA gene, in agreement with the field observation. Overall, our results suggested that manure fertilization promoted the

  17. The increasing control of the Atlantic Ocean on ENSO after the early 1990s

    NASA Astrophysics Data System (ADS)

    Yu, J. Y.; Paek, H.; Wang, L.; Lyu, K.

    2016-12-01

    The El Niño-Southern Oscillation (ENSO) is the most powerful interannual variability in Earth's climate system. Previous studies have emphasized processes within the tropical Pacific or Indian Oceans for the generation of ENSO. Recent studies have increasingly suggested that the Atlantic Ocean may play an active role in forcing ENSO variability. In this talk, we will present evidence from observational analyses and modeling experiments to show that the Atlantic Ocean became more capable of influencing ENSO properties after the Atlantic Multidecadal Oscillation (AMO) changed to its positive phase in the early-1990s. A wave source mechanism is proposed to explain how the positive phase of the AMO can intensify the North Pacific Subtropical High (NPSH) to change the ENSO from the Eastern Pacific (EP) type to the Central Pacific (CP) type. A sequence of processes are identified to suggest that the AMO can displace the Pacific Walker circulation, induce a wave source in the tropical central Pacific, and excite a barotropic wave train toward higher-latitudes to enhance the NPSH, which then triggers subtropical Pacific atmospheric forcing and atmosphere-ocean coupling to increase the occurrence of the CP ENSO. An Atlantic capacitor mechanism is also proposed to explain how the positive phase of the AMO can intensify the quasi-biennial (QB) component of ENSO resulting in a more frequent occurrence of ENSO events. We will show that the capacitor mechanism works only after the AMO warmed up the Atlantic sea surface temperatures after the early-1990s. The increased feedback from the Atlantic to the Pacific has enabled the Atlantic capacitor mechanism to intensify the biennial variability in the Pacific during the past two decades. Our suggestion is very different from the previous prevailing views that have emphasized the Indo-Pacific Oceans as the pacemaker for the biennial variability in ENSO. The increasing control of the Atlantic has enabled the CP ENSO dynamics to

  18. Decadal variability in the oxygen inventory of North Atlantic Subtropical Underwater captured by sustained, long-term oceanographic time-series observations

    NASA Astrophysics Data System (ADS)

    Montes, E.; Muller-Karger, F. E.; Cianca, A.; Lomas, M. W.; Lorenzoni, L.; Habtes, S. Y.

    2016-02-01

    Historical observations of potential temperature (θ), salinity (S), and dissolved oxygen concentrations (O2) in the subtropical North Atlantic (0-500 m; 0-40°N, 10-80°W) were examined to understand decadal-scale changes in O2 in Subtropical Underwater (STUW). STUW is observed at four of the longest, sustained ocean biogeochemical and ecological time-series stations, namely the CARIACO Ocean Time-Series Program (10.5°N, 64.7°W), the Bermuda Atlantic Time-series Study (BATS; 31.7°N, 64.2°W), Hydrostation "S" (32.1°N, 64.4°W), and the European Station for Time-series in the Ocean, Canary Islands (ESTOC; 29.2°N, 15.5°W). Data archived by NOAA NODC show that, between 1980 and 2013, STUW O2 (upper 300 m) has declined 0.58 μmol kg-1 yr-1 in the southeastern Caribbean Sea (10-15°N, 60-70°W), and 0.68 μmol kg-1 yr-1 in the western subtropical North Atlantic, respectively (30-35°N, 60-65°W). Observations at CARIACO (1995-2013) and BATS (1988-2012), specifically, show that STUW O2 has decreased approximately 0.61 and 0.21 μmol kg-1 yr-1, respectively. No apparent change in STUW O2 was observed at ESTOC over the course of the time series (1994-2013). Most of the observed O2 loss seems to result from shifts in ventilation associated with wind-driven mixing and slow down of STUW formation rates, rather than changes in diffusive air-sea O2 gas exchange. Variability of STUW O2 showed a strong relationship with the Atlantic Multidecadal Oscillation (AMO; R2=0.32, p < 0.001) index phase. During negative AMO years trade winds are stronger between 10°N and 30°N. These conditions stimulate the formation and ventilation of STUW. The decreasing trend in STUW O2 in the three decades spanning 1980 through 2013 thus reflects a shift from a strongly negative AMO between mid-1980's and mid-1990's to a positive AMO observed between the mid-1990's and 2013. These changes in STUW O2 were captured by the CARIACO, BATS, and Hydrostation "S" time series stations. Sustained

  19. Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant

    PubMed Central

    Sauder, Laura A; Peterse, Francien; Schouten, Stefan; Neufeld, Josh D

    2012-01-01

    The first step of nitrification is catalysed by both ammonia-oxidizing bacteria (AOB) and archaea (AOA), but physicochemical controls on the relative abundance and function of these two groups are not yet fully understood, especially in freshwater environments. This study investigated ammonia-oxidizing populations in nitrifying rotating biological contactors (RBCs) from a municipal wastewater treatment plant. Individual RBC stages are arranged in series, with nitrification at each stage creating an ammonia gradient along the flowpath. This RBC system provides a valuable experimental system for testing the hypothesis that ammonia concentration determines the relative abundance of AOA and AOB. The results demonstrate that AOA increased as ammonium decreased across the RBC flowpath, as indicated by qPCR for thaumarchaeal amoA and 16S rRNA genes, and core lipid (CL) and intact polar lipid (IPL) crenarchaeol abundances. Overall, there was a negative logarithmic relationship (R2 = 0.51) between ammonium concentration and the relative abundance of AOA amoA genes. A single AOA population was detected in the RBC biofilms; this phylotype shared low amoA and 16S rRNA gene homology with existing AOA cultures and enrichments. These results provide evidence that ammonia availability influences the relative abundances of AOA and AOB, and that AOA are abundant in some municipal wastewater treatment systems. PMID:22639927

  20. The combined influence of Pacific decadal oscillation and Atlantic multidecadal oscillation on central Mexico since the early 1600s

    NASA Astrophysics Data System (ADS)

    Park, Jungjae; Byrne, Roger; Böhnel, Harald

    2017-04-01

    Periodic droughts have been one of the most serious environmental issues in central Mexico since the earliest times. The impacts of future droughts are likely to become even more severe as the current global warming trend increases potential evaporation and moisture deficits. A full understanding of the mechanism underlying climate variability is imperative to narrow the uncertainty about future droughts and predict water availability. The climatic complexity generated by the combined influence of both Atlantic and Pacific forcings, however, causes considerable difficulty in interpreting central Mexican climate records. Also, the lack of high-resolution information regarding the climate in the recent past makes it difficult to clearly understand current drought mechanisms. Our new high-resolution δ18 O record from Hoya Rincon de Parangueo in central Mexico provides useful information on climate variations since the early 1600s. According to our results, the central Mexican climate has been predominantly controlled by the combined influence of the 20-year Pacific Decadal Oscillation (PDO) and the 70-year Atlantic Multidecadal Oscillation (AMO). However, the AMO probably lost much of its influence in central Mexico in the early 20th century and the PDO has mostly driven climate change since. Marked dryness was mostly associated with co-occurrence of highly positive PDO and negative AMO between ∼1600 and 1900.

  1. Antiproliferative activities of lesser galangal (Alpinia officinarum Hance Jam1), turmeric (Curcuma longa L.), and ginger (Zingiber officinale Rosc.) against acute monocytic leukemia.

    PubMed

    Omoregie, Samson N; Omoruyi, Felix O; Wright, Vincent F; Jones, Lemore; Zimba, Paul V

    2013-07-01

    Acute monocytic leukemia (AML M5 or AMoL) is one of the several types of leukemia that are still awaiting cures. The use of chemotherapy for cancer management can be harmful to normal cells in the vicinity of the target leukemia cells. This study assessed the potency of the extracts from lesser galangal, turmeric, and ginger against AML M5 to use the suitable fractions in neutraceuticals. Aqueous and organic solvent extracts from the leaves and rhizomes of lesser galangal and turmeric, and from the rhizomes only of ginger were examined for their antiproliferative activities against THP-1 AMoL cells in vitro. Lesser galangal leaf extracts in organic solvents of methanol, chloroform, and dichloromethane maintained distinctive antiproliferative activities over a 48-h period. The turmeric leaf and rhizome extracts and ginger rhizome extracts in methanol also showed distinctive anticancer activities. The lesser galangal leaf methanol extract was subsequently separated into 13, and then 18 fractions using reversed-phase high-performance liquid chromatography. Fractions 9 and 16, respectively, showed the greatest antiproliferative activities. These results indicate that the use of plant extracts might be a safer approach to finding a lasting cure for AMoL. Further investigations will be required to establish the discriminatory tolerance of normal cells to these extracts, and to identify the compounds in these extracts that possess the antiproliferative activities.

  2. Changes in aridity in response to the global warming hiatus

    NASA Astrophysics Data System (ADS)

    Guan, Xiaodan; Huang, Jianping; Guo, Ruixia

    2017-02-01

    The global warming slowdown or warming hiatus, began around the year 2000 and has persisted for nearly 15 years. Most studies have focused on the interpretation of the hiatus in temperature. In this study, changes in a global aridity index (AI) were analyzed by using a newly developed dynamical adjustment method that can successfully identify and separate dynamically induced and radiatively forced aridity changes in the raw data. The AI and Palmer Drought Severity Index produced a wetting zone over the mid-to-high latitudes of the Northern Hemisphere in recent decades. The dynamical adjustment analysis suggested that this wetting zone occurred in response to the global warming hiatus. The dynamically induced AI (DAI) played a major role in the AI changes during the hiatus period, and its relationships with the North Atlantic Oscillation (NAO), Pacific Decadal Oscillation (PDO), and Atlantic Multi-decadal Oscillation (AMO) also indicated that different phases of the NAO, PDO, and AMO contributed to different performances of the DAI over the Northern Hemisphere. Although the aridity wetting over the mid-to-high latitudes may relieve long-term drying in certain regions, the hiatus is temporary, and so is the relief. Accelerated global warming will return when the NAO, PDO, and AMO revert to their opposite phases in the future, and the wetting zone is likely to disappear.

  3. Differential response of ammonia-oxidizing archaea and bacteria to the wetting of salty arid soil.

    PubMed

    Sher, Yonatan; Ronen, Zeev; Nejidat, Ali

    2016-08-01

    Ammonia-oxidizing archaea and bacteria (AOA, AOB) catalyze the first and rate-limiting step of nitrification. To examine their differential responses to the wetting of dry and salty arid soil, AOA and AOB amoA genes (encoding subunit A of the ammonia monooxygenase) and transcripts were enumerated in dry (summer) and wet (after the first rainfall) soil under the canopy of halophytic shrubs and between the shrubs. AOA and AOB were more abundant under shrub canopies than between shrubs in both the dry and wetted soil. Soil wetting caused a significant decrease in AOB abundance under the canopy and an increase of AOA between the shrubs. The abundance of the archaeal amoA gene transcript was similar for both the wet and dry soil, and the transcript-to-gene ratios were < 1 independent of niche or water content. In contrast, the bacterial amoA transcript-to-gene ratios were between 78 and 514. The lowest ratio was in dry soil under the canopy and the highest in the soil between the shrubs. The results suggest that the AOA are more resilient to stress conditions and maintain a basic activity in arid ecosystems, while the AOB are more responsive to changes in the biotic and abiotic conditions. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  4. Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene.

    PubMed

    Offre, Pierre; Prosser, James I; Nicol, Graeme W

    2009-10-01

    Autotrophic ammonia-oxidizing bacteria were considered to be responsible for the majority of ammonia oxidation in soil until the recent discovery of the autotrophic ammonia-oxidizing archaea. To assess the relative contributions of bacterial and archaeal ammonia oxidizers to soil ammonia oxidation, their growth was analysed during active nitrification in soil microcosms incubated for 30 days at 30 degrees C, and the effect of an inhibitor of ammonia oxidation (acetylene) on their growth and soil nitrification kinetics was determined. Denaturing gradient gel electrophoresis (DGGE) analysis of bacterial ammonia oxidizer 16S rRNA genes did not detect any change in their community composition during incubation, and quantitative PCR (qPCR) analysis of bacterial amoA genes indicated a small decrease in abundance in control and acetylene-containing microcosms. DGGE fingerprints of archaeal amoA and 16S rRNA genes demonstrated changes in the relative abundance of specific crenarchaeal phylotypes during active nitrification. Growth was also indicated by increases in crenarchaeal amoA gene copy number, determined by qPCR. In microcosms containing acetylene, nitrification and growth of the crenarchaeal phylotypes were suppressed, suggesting that these crenarchaea are ammonia oxidizers. Growth of only archaeal but not bacterial ammonia oxidizers occurred in microcosms with active nitrification, indicating that ammonia oxidation was mostly due to archaea in the conditions of the present study.

  5. Presence and Expression of Microbial Genes Regulating Soil Nitrogen Dynamics Along the Tanana River Successional Sequence

    NASA Astrophysics Data System (ADS)

    Boone, R. D.; Rogers, S. L.

    2004-12-01

    We report on work to assess the functional gene sequences for soil microbiota that control nitrogen cycle pathways along the successional sequence (willow, alder, poplar, white spruce, black spruce) on the Tanana River floodplain, Interior Alaska. Microbial DNA and mRNA were extracted from soils (0-10 cm depth) for amoA (ammonium monooxygenase), nifH (nitrogenase reductase), napA (nitrate reductase), and nirS and nirK (nitrite reductase) genes. Gene presence was determined by amplification of a conserved sequence of each gene employing sequence specific oligonucleotide primers and Polymerase Chain Reaction (PCR). Expression of the genes was measured via nested reverse transcriptase PCR amplification of the extracted mRNA. Amplified PCR products were visualized on agarose electrophoresis gels. All five successional stages show evidence for the presence and expression of microbial genes that regulate N fixation (free-living), nitrification, and nitrate reduction. We detected (1) nifH, napA, and nirK presence and amoA expression (mRNA production) for all five successional stages and (2) nirS and amoA presence and nifH, nirK, and napA expression for early successional stages (willow, alder, poplar). The results highlight that the existing body of previous process-level work has not sufficiently considered the microbial potential for a nitrate economy and free-living N fixation along the complete floodplain successional sequence.

  6. Transformations of Aromatic Compounds by Nitrosomonas europaea

    PubMed Central

    Keener, William K.; Arp, Daniel J.

    1994-01-01

    Benzene and a variety of substituted benzenes inhibited ammonia oxidation by intact cells of Nitrosomonas europaea. In most cases, the inhibition was accompanied by transformation of the aromatic compound to a more oxidized product or products. All products detected were aromatic, and substituents were often oxidized but were not separated from the benzene ring. Most transformations were enhanced by (NH4)2SO4 (12.5 mM) and were prevented by C2H2, a mechanism-based inactivator of ammonia monooxygenase (AMO). AMO catalyzed alkyl substituent hydroxylations, styrene epoxidation, ethylbenzene desaturation to styrene, and aniline oxidation to nitrobenzene (and unidentified products). Alkyl substituents were preferred oxidation sites, but the ring was also oxidized to produce phenolic compounds from benzene, ethylbenzene, halobenzenes, phenol, and nitrobenzene. No carboxylic acids were identified. Ethylbenzene was oxidized via styrene to two products common also to oxidation of styrene; production of styrene is suggestive of an electron transfer mechanism for AMO. Iodobenzene and 1,2-dichlorobenzene were oxidized slowly to halophenols; 1,4-dichlorobenzene was not transformed. No 2-halophenols were detected as products. Several hydroxymethyl (-CH2OH)-substituted aromatics and p-cresol were oxidized by C2H2-treated cells to the corresponding aldehydes, benzaldehyde was reduced to benzyl alcohol, and o-cresol and 2,5-dimethylphenol were not depleted. PMID:16349282

  7. Choosing the route to traveler information systems deployment : decision factors for creating public/private business plans

    DOT National Transportation Integrated Search

    2012-08-01

    The United States Department of Transportation (U.S. DOT) has initiated a multimodal connected vehicle research initiative (hereafter referred to as the Initiative) that aims to enable safe, interoperable, networked, wireless communications amo...

  8. A new record of Atlantic sea surface salinity from 1896-2013 reveals the signatures of climate variability and long-term trends

    NASA Astrophysics Data System (ADS)

    Friedman, A. R.; Reverdin, G. P.; Khodri, M.; Gastineau, G.

    2017-12-01

    In the North Atlantic, sea surface salinity is both an indicator of the hydrological cycle and an active component of the ocean circulation. As an indirect "ocean rain gauge", surface salinity reflects the net surface fluxes of evaporation - precipitation + runoff, along with advection and vertical mixing. Subpolar surface salinity also may influence the strength of deep convection and the Atlantic Meridional Overturning Circulation (AMOC). However, continuous surface salinity time series beginning before the 1950s are rare, limiting our ability to resolve modes of variability and long-term trends. Here, we present a new gridded surface salinity record in the Atlantic from 1896-2013, compiled from a variety of historical sources. The compilation covers most of the Atlantic from 20°S-70°N, at 100-1000 km length scale and interannual temporal resolution, allowing us to resolve major modes of variability and linkages with large-scale Atlantic climate variations. We find that the low-latitude (tropical and subtropical) Atlantic and the subpolar Atlantic surface salinity are negatively correlated, with subpolar anomalies leading low-latitude anomalies by about a decade. Subpolar surface salinity varies in phase with the Atlantic Multidecadal Oscillation (AMO), whereas low-latitude surface salinity lags the AMO and varies in phase with the low-frequency North Atlantic Oscillation (NAO). Additionally, northern tropical surface salinity is anticorrelated with the AMO and with Sahel rainfall, suggesting that it reflects the latitude of the Intertropical Convergence Zone. The 1896-2013 long-term trend features an amplification of the mean Atlantic surface salinity gradient pattern, with freshening in the subpolar Atlantic and salinification in the tropical and subtropical Atlantic. We find that regressing out the AMO and the low-frequency NAO has little effect on the long-term residual trend. The spatial trend structure is consistent with the "rich-get-richer" hydrological

  9. InP/Ga0.47In0.53As monolithic, two-junction, three-terminal tandem solar cells

    NASA Technical Reports Server (NTRS)

    Wanlaas, M. W.; Gessert, T. A.; Horner, G. S.; Emery, K. A.; Coutts, T. J.

    1991-01-01

    The work presented has focussed on increasing the efficiency of InP-based solar cells through the development of a high-performance InP/Ga(0.47)In(0.53)As two-junction, three-terminal monolithic tandem cell. Such a tandem is particularly suited to space applications where a radiation-hard top cell (i.e., InP) is required. Furthermore, the InP/Ga(0.47)In(0.53)As materials system is lattice matched and offers a top cell/bottom cell bandgap differential (0.60 eV at 300 K) suitable for high tandem cell efficiencies under AMO illumination. A three-terminal configuration was chosen since it allows for independent power collection from each subcell in the monolithic stack, thus minimizing the adverse impact of radiation damage on the overall tandem efficiency. Realistic computer modeling calculations predict an efficiency boost of 7 to 11 percent from the Ga(0.47)In(0.53)As bottom cell under AMO illumination (25 C) for concentration ratios in the 1 to 1000 range. Thus, practical AMO efficiencies of 25 to 32 percent appear possible with the InP/Ga(0.47)In(0.53)As tandem cell. Prototype n/p/n InP/Ga(0.47)In(0.53)As monolithic tandem cells were fabricated and tested successfully. Using an aperture to define the illuminated areas, efficiency measurements performed on a non-optimized device under standard global illumination conditions (25 C) with no antireflection coating (ARC) give 12.2 percent for the InP top cell and 3.2 percent for the Ga(0.47)In(0.53)As bottom cell, yielding an overall tandem efficiency of 15.4 percent. With an ARC, the tandem efficiency could reach approximately 22 percent global and approximately 20 percent AMO. Additional details regarding the performance of individual InP and Ga(0.47)In(0.53)As component cells, fabrication and operation of complete tandem cells and methods for improving the tandem cell performance, are also discussed.

  10. Effects of nitrogen application rate and a nitrification inhibitor dicyandiamide on ammonia oxidizers and N2O emissions in a grazed pasture soil.

    PubMed

    Dai, Yu; Di, Hong J; Cameron, Keith C; He, Ji-Zheng

    2013-11-01

    Ammonia oxidizers, including ammonia oxidizing bacteria (AOB) and ammonia oxidizing archaea (AOA) are important drivers of a key step of the nitrogen cycle - nitrification, which affects the production of the potent greenhouse gas, nitrous oxide (N2O). A field experiment was conducted to determine the effect of nitrogen application rates and the nitrification inhibitor dicyandiamide (DCD) on the abundance of AOB and AOA and on N2O emissions in a grazed pasture soil. Nitrogen (N) was applied at four different rates, with urea applied at 50 and 100 kg N ha(-1) and animal urine at 300 and 600 kg N ha(-1). DCD was applied to some of the N treatments at 10 kg ha(-1). The results showed that the AOB amoA gene copy numbers were greater than those of AOA. The highest ratio of the AOB to AOA amoA gene copy numbers was 106.6 which occurred in the urine-N 600 treatment. The AOB amoA gene copy numbers increased with increasing nitrogen application rates. DCD had a significant impact in reducing the AOB amoA gene copy numbers especially in the high nitrogen application rates. N2O emissions increased with the N application rates. DCD had the most significant effect in reducing the daily and total N2O emissions in the highest nitrogen application rate. The greatest reduction of total N2O emissions by DCD was 69% in the urine-N 600 treatment. The reduction in the N2O emission factor by DCD ranged from 58% to 83%. The N2O flux and NO3(-)-N concentrations were significantly correlated to the growth of AOB, rather than AOA. This study confirms the importance of AOB in nitrification and the effect of DCD in inhibiting AOB growth and in decreasing N2O emissions in grazed pasture soils under field conditions. Copyright © 2012 Elsevier B.V. All rights reserved.

  11. Toxic effects of oxytetracycline and copper, separately or combined, on soil microbial biomasses.

    PubMed

    Wang, Lanjun; Wang, Jinhua; Zhu, Lusheng; Wang, Jun

    2018-04-01

    The production of commercial livestock and poultry often involves using with antibiotics and feed additives, such as oxytetracycline (OTC) and copper (Cu). These are often excreted into the soil by animal feces; hence, combined pollutants may contaminate the soil. To evaluate single and combined toxic effects of OTC and Cu on the soil ecology, changes in quantities of bacteria, fungi, and actinomycetes in the soil were studied over a 28-d incubation period by a plate count method, microbes numbers counted on days 7, 14, 21, and 28. Abundances of ammonia monooxygenase (amoA) gene expression by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in soil samples also were tested by real-time polymerase chain reactions (RT-PCRs) on day 21. The results revealed that the numbers of bacteria, fungi and actinomycetes and amoA genes copies of AOA and AOB were reduced seriously by exposure to Cu (1.60 mmol/kg). Similarly, the combined pollution treatments (mole ratios of OTC: Cu was 1:2, 1:8, and 1:32) also had inhibitory effect on bacteria, fungi, and actinomycetes numbers and amoA gene copies of AOA and AOB; the inhibitory rate was on obvious growth trend with the increasing mole ratios. Effects from single OTC pollution were found on bacteria (days 7 and 14), fungi (days 7, 14, 21, and 28), and AOA-amoA gene copies (day 21), with promotion at a low concentration (0.05 mmol/kg) and suppression at higher concentrations (0.2 and 0.8 mmol/kg). Also, numbers of bacteria, fungi, and actinomycetes decreased with longer culture times. Combining OTC and Cu led to a higher inhibition of soil microbes than when either chemical was used alone. However, there was no significant relationship between single and combined toxic chemicals because of their complicated interactions, either antagonistic or synergistic. The results also indicated the sensitivity of bacteria, fungi, actinomycetes on toxic chemicals existed difference and that the AOA were more tolerant than

  12. 2. Historic American Buildings Survey, Laurence E. Tilley, Photographer April, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. Historic American Buildings Survey, Laurence E. Tilley, Photographer April, 1958 EAST (FRONT) ELEVATION SHOWING WEST SIDE OF BENEFIT STREET NORTH OF THE HOUSE. - Amos Allen House, 62 Benefit Street, Providence, Providence County, RI

  13. Operators selectively develop muddy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Stremel, K.

    1984-08-01

    Restricted production has limited drilling in Amos Draw Field but activity continues on the fringes of this large producing field in the Powder River Basin. Drilling and exploration activity in the field are discussed.

  14. Coherent Soft X-ray Diffraction Imaging of Coliphage PR772 at the Linac Coherent Light Source

    DOE Data Explorer

    Reddy, Hemanth, K.N.

    2017-01-05

    A dataset of coherent soft X-ray diffraction images of Coliphage PR772 virus, collected at the Atomic Molecular Optics (AMO) beamline with pnCCD detectors in the LAMP instrument at the Linac Coherent Light Source.

  15. Clinical, biochemical, and molecular studies in pyridoxine-dependent epilepsy. Antisense therapy as possible new therapeutic option.

    PubMed

    Pérez, Belén; Gutiérrez-Solana, Luis González; Verdú, Alfonso; Merinero, Begoña; Yuste-Checa, Patricia; Ruiz-Sala, Pedro; Calvo, Rocio; Jalan, Anil; Marín, Laura López; Campos, Oscar; Ruiz, Maria Ángeles; San Miguel, Marta; Vázquez, Maria; Castro, Margarita; Ferrer, Isaac; Navarrete, Rosa; Desviat, Lourdes Ruiz; Lapunzina, Pablo; Ugarte, Magdalena; Pérez-Cerdá, Celia

    2013-02-01

    Pyridoxine-dependent epilepsy seizure (PDE; OMIM 266100) is a disorder associated with severe seizures that can be controlled pharmacologically with pyridoxine. In the majority of patients with PDE, the disorder is caused by the deficient activity of the enzyme α-aminoadipic semialdehyde dehydrogenase (antiquitin protein), which is encoded by the ALDH7A1 gene. The aim of this work was the clinical, biochemical, and genetic analysis of 12 unrelated patients, mostly from Spain, in an attempt to provide further valuable data regarding the wide clinical, biochemical, and genetic spectrum of the disease. The disease was confirmed based on the presence of α-aminoadipic semialdehyde (α-AASA) in urine measured by liquid chromatography tandem mass spectrometry (LC-MS/MS) and pipecolic acid (PA) in plasma and/or cerebrospinal fluid (CSF) measured by high performance liquid chromatography (HPLC)/MS/MS and by sequencing analysis of messenger RNA (mRNA) and genomic DNA of ALDH7A1. Most of the patients had seizures in the neonatal period, but they responded to vitamin B6 administration. Three patients developed late-onset seizures, and most patients showed mild-to-moderate postnatal developmental delay. All patients had elevated PA and α-AASA levels, even those who had undergone pyridoxine treatment for several years. The clinical spectrum of our patients is not limited to seizures but many of them show associated neurologic dysfunctions such as muscle tone alterations, irritability, and psychomotor retardation. The mutational spectrum of the present patients included 12 mutations, five already reported (c.500A>G, c.919C>T, c.1429G>C c.1217_1218delAT, and c.1482-1G>T) and seven novel sequence changes (c.75C>T, c.319G>T, c.554_555delAA, c.757C>T, c.787 + 1G>T, c.1474T>C, c.1093-?_1620+?). Only one mutation, p.G477R (c.1429G>C), was recurrent; this was detected in four different alleles. Transcriptional profile analysis of one patient's lymphoblasts and ex vivo splicing

  16. The effect of the presence of the accessory maxillary ostium on the maxillary sinus.

    PubMed

    Yenigun, Alper; Fazliogullari, Zeliha; Gun, Cihat; Uysal, Ismihan Ilknur; Nayman, Alaaddin; Karabulut, Ahmet Kagan

    2016-12-01

    This study was conducted to investigate the presence of the accessory maxillary ostium and its effects on the maxillary sinus, and the concurrent occurrence of morphological variations of neighboring anatomical structures. This study was performed in a tertiary referral center. This is a cross-sectional retrospective study that evaluated coronal CTs of patients to determine the frequency of the accessory maxillary ostium and investigated any simultaneous morphological variations in neighboring anatomical structures. The presence of the accessory maxillary ostium (AMO) plus any concurrent morphological variations of neighboring structures were investigated in 377 patients, with 754 sides. AMO was found to be present in 19.1 % (72/377) of the patients. A concurrent mucus retention cyst was found to be statistically significant on both sides (right side: p = 0.00, left side: p = 0.00), as well as mucosal thickening (right side: p = 0.00, left side: p = 0.00), and maxillary sinusitis (right side: p = 0.04, left side: p = 0.03). No other concurrent variations of statistical significance were detected in the neighboring structures. Our study demonstrated that with the presence of AMO, the likelihood of encountering a mucus retention cyst (48.6 %) had an approximately threefold increase, and that of encountering mucosal thickening (43.0 %) and maxillary sinusitis (29.1 %) had a twofold increase.

  17. Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity.

    PubMed

    Nacke, Heiko; Schöning, Ingo; Schindler, Malte; Schrumpf, Marion; Daniel, Rolf; Nicol, Graeme W; Prosser, James I

    2017-11-01

    Coastal areas worldwide are challenged by climate change-associated increases in sea level and storm surge quantities that potentially lead to more frequent flooding of soil ecosystems. Currently, little is known of the effects of inundation events on microorganisms controlling nitrification in these ecosystems. The goal of this study was to investigate the impact of seawater flooding on the abundance, community composition and salinity tolerance of soil ammonia oxidisers. Topsoil was sampled from three islands flooded at different frequencies by the Wadden Sea. Archaeal ammonia oxidiser amoA genes were more abundant than their betaproteobacterial counterparts, and the distribution of archaeal and bacterial ammonia oxidiser amoA and 16S rRNA gene sequences significantly differed between the islands. The findings indicate selection of ammonia oxidiser phylotypes with greater tolerance to high salinity and slightly alkaline pH (e.g. Nitrosopumilus representatives) in frequently flooded soils. A cluster phylogenetically related to gammaproteobacterial ammonia oxidisers was detected in all samples analysed in this survey. Nevertheless, no gammaprotebacterial amoA genes could be amplified via PCR and only betaproteobacterial ammonia oxidisers were detected in enrichment cultures. A slurry-based experiment demonstrated the tolerance of both bacterial and archaeal ammonia oxidisers to a wide range of salinities (e.g. Wadden Sea water salinity) in soil naturally exposed to seawater at a high frequency. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  18. MicroRNA-100 is involved in shrimp immune response to white spot syndrome virus (WSSV) and Vibrio alginolyticus infection

    PubMed Central

    Wang, Zhi; Zhu, Fei

    2017-01-01

    In this study, we discovered that shrimp miR-100 was up-regulated at 24 h after WSSV or Vibrio alginolyticus infection, confirming its participation in the innate immune system of shrimp. The anti-miRNA oligonucleotide (AMO-miR-100) was applied to inhibit the expression of miR-100. After AMO-miR-100 treatment, the shrimp was challenged with WSSV or V. alginolyticus. The knockdown of miR-100 expression decreased the mortality of WSSV-infected shrimp from 24 h to 72 h post-infection and enhanced the mortality of V. alginolyticus-infected shrimp significantly. The knockdown of miR-100 affected phenoloxidase (PO) activity, superoxide dismutase (SOD) activity and total hemocyte count (THC) after the infection with WSSV or V. alginolyticus, indicating a regulative role of miR-100 in the immune potential of shrimp in the response to WSSV or V. alginolyticus infection. The knockdown of miR-100 induced the apoptosis of shrimp hemocytes, and V. alginolyticus + AMO-miR-100 treatment caused more hemocyte apoptosis than V. alginolyticus treatment. The miR-100 influenced also the morphology of shrimp hemocytes and regulated the phagocytosis of WSSV or V. alginolyticus. Thus, we concluded that miR-100 may promote the anti-Vibrio immune response of shrimp through regulating apoptosis, phagocytosis and PO activity and affects the progression of WSSV infection at a certain level. PMID:28181552

  19. Middle and upper Miocene natural gas sands in onshore and offshore Alabama

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Mink, R.M.; Mancini, E.A.; Bearden, B.L.

    1988-09-01

    Thirty Miocene natural gas fields have been established in onshore and offshore Alabama since the discovery of Miocene gas in this area in 1979. These fields have produced over 16 bcf of natural gas from the middle Miocene Amos sand (24 fields) and upper Miocene Luce (3 fields), Escambia (1 field), and Meyer (3 fields) sands. Production from the Amos transgressive sands represents over 92% of the cumulative shallow Miocene natural gas produced in onshore and offshore Alabama. In addition, over 127 bcf of natural gas has been produced from upper Miocene sands in the Chandeleur area. The productive Miocenemore » section in onshore and coastal Alabama is interpreted to present transgressive marine shelf and regressive shoreface sands. The middle Miocene Amos sand bars are the most productive reservoirs of natural gas in onshore and coastal Alabama, principally due to the porous and permeable nature of these transgressive sands and their stratigraphic relationship to the underlying basinal clays in this area. In offshore Alabama the upper Miocene sands become thicker and are generally more porous and permeable than their onshore equivalents. Because of their deeper burial depth in offshore Alabama, these upper Miocene sands are associated with marine clays that are thermally more mature. The combination of reservoir grade lithologies associated with moderately mature petroleum source rocks enhances the natural gas potential of the upper Miocene sands in offshore Alabama.« less

  20. MicroRNA-100 is involved in shrimp immune response to white spot syndrome virus (WSSV) and Vibrio alginolyticus infection.

    PubMed

    Wang, Zhi; Zhu, Fei

    2017-02-09

    In this study, we discovered that shrimp miR-100 was up-regulated at 24 h after WSSV or Vibrio alginolyticus infection, confirming its participation in the innate immune system of shrimp. The anti-miRNA oligonucleotide (AMO-miR-100) was applied to inhibit the expression of miR-100. After AMO-miR-100 treatment, the shrimp was challenged with WSSV or V. alginolyticus. The knockdown of miR-100 expression decreased the mortality of WSSV-infected shrimp from 24 h to 72 h post-infection and enhanced the mortality of V. alginolyticus-infected shrimp significantly. The knockdown of miR-100 affected phenoloxidase (PO) activity, superoxide dismutase (SOD) activity and total hemocyte count (THC) after the infection with WSSV or V. alginolyticus, indicating a regulative role of miR-100 in the immune potential of shrimp in the response to WSSV or V. alginolyticus infection. The knockdown of miR-100 induced the apoptosis of shrimp hemocytes, and V. alginolyticus + AMO-miR-100 treatment caused more hemocyte apoptosis than V. alginolyticus treatment. The miR-100 influenced also the morphology of shrimp hemocytes and regulated the phagocytosis of WSSV or V. alginolyticus. Thus, we concluded that miR-100 may promote the anti-Vibrio immune response of shrimp through regulating apoptosis, phagocytosis and PO activity and affects the progression of WSSV infection at a certain level.

  1. An out of phase coupling between the atmosphere and the ocean over the North Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Ribera, Pedro; Ordoñez, Paulina; Gallego, David; Peña-Ortiz, Cristina

    2017-04-01

    An oscillation band, with a period ranging between 40 and 60 years, has been identified as the most intense signal over the North Atlantic Ocean using several oceanic and atmospheric reanalyses between 1856 and the present. This signal represents the Atlantic Multidecadal Oscillation, an oscillation between warmer and colder than normal conditions in SST. Simultaneously, those changes in SST are accompanied by changes in atmospheric conditions represented by surface pressure, temperature and circulation. In fact, the evolution of the surface pressure pattern along this oscillation shows a North Atlantic Oscillation-like pattern, suggesting the existence of an out of phase coupling between atmospheric and oceanic conditions. Further analysis shows that the evolution of the oceanic SST distribution modifies atmospheric baroclinic conditions in the mid to high latitudes of the North Atlantic and leads the atmospheric variability by 6-7 years. If AMO represents the oceanic conditons and NAO represents the atmospheric variability then it could be said that AMO of one sign leads NAO of the opposite sign with a lag of 6-7 years. On the other hand, the evolution of atmospheric conditions, represented by pressure distribution patterns, favors atmospheric circulation anomalies and induces a heat advection which tends to change the sign of the existing SST distribution and oceanic conditions with a lag of 16-17 years. In this case, NAO of one sign leads AMO of the same sign with a lag of 16-17 years.

  2. Analysis of moment structures for assessing relationships among perceived chewing ability, dentition status, muscle strength, and balance in community-dwelling older adults.

    PubMed

    Moriya, Shingo; Notani, Kenji; Murata, Ayumi; Inoue, Nobuo; Miura, Hiroko

    2014-12-01

    The aim of this study was to assess relationships among perceived chewing ability, dentition status, muscle strength and balance in community-dwelling older adults using analysis of moment structures (Amos). Physical performance parameters such as muscle strength and balance can predict the future onset of disabilities in activities of daily living among older adults. In this context, elucidation of the relationships among oral conditions and physical performance parameters is necessary. Data on occlusal contact patterns of natural teeth (OPNT), self-assessed masticatory ability (mastication), body mass index (BMI), handgrip strength (HG) and one-leg standing time with eyes open (OLST) were collected from 501 independently living adults aged 65-74 years. The relationships among these parameters were analysed using Spearman's rank correlation coefficients and Amos. Subjects of both genders showed significant correlations among OPNT, mastication, HG and OLST, evaluated using Spearman's rank correlation coefficients. For each Amos model, the goodness-of-fit statistic indicated a good level of fit. In both men and women, OPNT was significantly related to mastication, and mastication was related to HG but not to OLST. OPNT was related to neither HG nor OLST in women and was related to OLST but not HG in men. The findings observed in this study present a possible importance of dental status and perceived chewing ability for the onset of disability by influencing physical performance in community-dwelling older adults. © 2012 The Gerodontology Society and John Wiley & Sons A/S.

  3. Braking System Integration in Dual Mode Systems

    DOT National Transportation Integrated Search

    1974-05-01

    An optimal braking system for Dual Mode is a complex product of vast number of multivariate, interdependent parameters that encompass on-guideway and off-guideway operation as well as normal and emergency braking. : Details of, and interralations amo...

  4. Recent Accomplishments in Laser-Photovoltaic Wireless Power Transmission

    NASA Technical Reports Server (NTRS)

    Fikes, John C.; Henley, Mark W.; Mankins, John C.; Howell, Joe T.; Fork, Richard L.; Cole, Spencer T.; Skinner, Mark

    2003-01-01

    Wireless power transmission can be accomplished over long distances using laser power sources and photovoltaic receivers. Recent research at AMOS has improved our understanding of the use of this technology for practical applications. Research by NASA, Boeing, the University of Alabama-Huntsville, the University of Colorado, Harvey Mudd College, and the Naval Postgraduate School has tested various commercial lasers and photovoltaic receiver configurations. Lasers used in testing have included gaseous argon and krypton, solid-state diodes, and fiber optic sources, at wavelengths ranging from the visible to the near infra-red. A variety of Silicon and Gallium Arsenide photovoltaic have been tested with these sources. Safe operating procedures have been established, and initial tests have been conducted in the open air at AMOS facilities. This research is progressing toward longer distance ground demonstrations of the technology and practical near-term space demonstrations.

  5. Atmospheric Circulation and West Greenland Precipitation

    NASA Astrophysics Data System (ADS)

    Auger, J.; Birkel, S. D.; Maasch, K. A.; Schuenemann, K. C.; Mayewski, P. A.; Osterberg, E. C.; Hawley, R. L.; Marshall, H. P.

    2016-12-01

    The surface mass balance of the Greenland Ice Sheet has declined substantially in recent decades across West Greenland with important implications for global sea level and freshwater resources. Here, we investigate changes in heat and moisture delivery to West Greenland through changes in atmospheric circulation in order to gain insight into possible future climate. Particular focus is placed on the role of known climate variability, including the North Atlantic Oscillation (NAO) and Atlantic Multidecadal Oscillation (AMO), in influencing the intensity, frequency, and track of cyclones across the North Atlantic. This study utilizes multiple daily climate reanalysis models (CFSR, ERA-Interim, JRA-55) in addition to observational data. Preliminary results indicate a primary influence from the NAO, with a secondary influence from the low frequency oscillation connected to the AMO. Work is ongoing, and a complete synthesis will be presented at the fall meeting.

  6. Recovery of Images from the AMOS ELSI Data for STS-33

    DTIC Science & Technology

    1990-04-19

    ore recorded on tape in both video and digital formats. The ELSI \\-. used on thrce passes, orbits 21, 37, and 67 on 24,2S, and 27 November. These data...November, in video fontit, were hin&narried to Gcopih)sics labontory (0L) :t the beginning or December 1989; tli cl.ified data, in digital formn.t, were...are also sampled and reconverted to maulog form, in a stanicrd viko format, for display on a video monitor and recording on videotape. 3. TAPE FORMAT

  7. Air Force Maui Optical and Supercomputing Site (AMOS) Application Briefs 2004

    DTIC Science & Technology

    2004-01-01

    Respondents should be aware that notwithstanding any other provision of law, no person shall be subject to a penalty for failing to comply with a collection...17. LIMITATION OF ABSTRACT Same as Report (SAR) 18. NUMBER OF PAGES 60 19a. NAME OF RESPONSIBLE PERSON a. REPORT unclassified b. ABSTRACT...SOR methods, the work in parallel matrix iterative methods is very relevant to the parallelization of a CA. The Moore neighborhood used in this work

  8. Alpha Monocerotids 2017

    NASA Astrophysics Data System (ADS)

    Roggemans, Paul; Johannink, Carl; Biets, Jean-Marie

    2018-01-01

    17 orbits of the annual component of the Alpha Monocerotids (246 AMO) were captured by CAMS networks between 21 and 24 November, 10 of them in the United Arab Emirates on 21 November between 21h to 24h UT.

  9. Advance Manufacturing Office FY 2017 Budget At-A-Glance

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    None

    2016-03-01

    The Advanced Manufacturing Office (AMO) brings together manufacturers, research institutions, suppliers, and universities to investigate manufacturing processes, information, and materials technologies critical to advance domestic manufacturing of clean energy products, and to support energy productivity across the entire manufacturing sector.

  10. Interaction of angiogenically stimulated intermediate CD163+ monocytes/macrophages with soft hydrophobic poly(n-butyl acrylate) networks with elastic moduli matched to that of human arteries.

    PubMed

    Mayer, Anke; Kratz, Karl; Hiebl, Bernhard; Lendlein, Andreas; Jung, Friedrich

    2012-03-01

    The cell population of peripheral blood monocytes/macrophages (MO) is heterogeneous: The majority of the MO are CD14++ CD16- and named "classical" (= MO1). Furthermore, two other subpopulations were described: CD14++ CD16+ ("intermediate" = MO2) and CD14+ CD16++ ("non-classical" = MO3). It is reported that MO2 possess anti-inflammatory properties and express the MO lineage marker CD163. On a hydrophilic neutrally charged acrylamide-based hydrogel human intermediate (CD14++ CD16+ ), angiogenically stimulated CD163++ monocytes/macrophages (aMO2) maintained a proangiogenic and noninflammatory status for at least 14 days. Here, we explored whether this aMO2 subset adhered to hydrophobic poly(n-butyl acrylate) networks (cPnBA) and also remained in its proangiogenic and noninflammatory status. Because substrate elasticity can impact adherence, morphology, and function of cells, cPnBAs with different Young's modulus (250 and 1100 kPa) were investigated, whereby their elasticity was tailored by variation of the cross-linker content and matched to the elasticity of human arteries. The cPnBAs exhibited similar surface properties (e.g., surface roughness), which were maintained after ethylene oxide sterilization and exposure in serum-free cell culture medium for 18 h at 37°C. aMO2 were seeded on cPnBA samples (1.7 × 10(5) cells/1.33 cm(2) ) in Dulbecco's modified Eagle medium (DMEM high glucose) supplemented with vascular endothelial growth factor 165 (VEGF-A(165) , 10 ng/mL) and fetal calf serum (10 vol%) for 3 and 72 h. On both polymeric samples (n = 3 each), the numbers of adherent cells per unit area were significantly higher (P < 0.01; cPnBA0250: 3 h 13 ± 5 cells/mm(2) , 72 h 234 ± 106 cells/mm(2) ; cPnBA1100: 3 h 14 ± 3 cells/mm(2) , 72 h 198 ± 113 cells/mm(2) ) compared to control cultures (glass, 3 h: 6 ± 3 cells/mm(2) , 72 h: 130 ± 83 cells/mm(2) ) and showed a typically spread morphology. The

  11. Decadal variability in the oxygen inventory of North Atlantic subtropical underwater captured by sustained, long-term oceanographic time series observations

    NASA Astrophysics Data System (ADS)

    Montes, Enrique; Muller-Karger, Frank E.; Cianca, Andrés.; Lomas, Michael W.; Lorenzoni, Laura; Habtes, Sennai

    2016-03-01

    Historical observations of potential temperature (θ), salinity (S), and dissolved oxygen concentrations (O2) in the tropical and subtropical North Atlantic (0-500 m; 0-40°N, 10-90°W) were examined to understand decadal-scale changes in O2 in subtropical underwater (STUW). STUW is observed at four of the longest, sustained ocean biogeochemical and ecological time series stations, namely, the CArbon Retention In A Colored Ocean (CARIACO) Ocean Time Series Program (10.5°N, 64.7°W), the Bermuda Atlantic Time-series Study (BATS; 31.7°N, 64.2°W), Hydrostation "S" (32.1°N, 64.4°W), and the European Station for Time-series in the Ocean, Canary Islands (ESTOC; 29.2°N, 15.5°W). Observations over similar time periods at CARIACO (1996-2013), BATS (1988-2011), and Hydrostation S (1980-2013) show that STUW O2 has decreased approximately 0.71, 0.28, and 0.37 µmol kg-1 yr-1, respectively. No apparent change in STUW O2 was observed at ESTOC over the course of the time series (1994-2013). Ship observation data for the tropical and subtropical North Atlantic archived at NOAA National Oceanographic Data Center show that between 1980 and 2013, STUW O2 (upper ~300 m) declined 0.58 µmol kg-1 yr-1 in the southeastern Caribbean Sea (10-15°N, 60-70°W) and 0.68 µmol kg-1 yr-1 in the western subtropical North Atlantic (30-35°N, 60-65°W). A declining O2 trend was not observed in the eastern subtropical North Atlantic (25-30°N, 15-20°W) over the same period. Most of the observed O2 loss seems to result from shifts in ventilation associated with decreased wind-driven mixing and a slowing down of STUW formation rates, rather than changes in diffusive air-sea O2 gas exchange or changes in the biological oceanography of the North Atlantic. Variability of STUW O2 showed a significant relationship with the wintertime (January-March) Atlantic Multidecadal Oscillation index (AMO, R2 = 0.32). During negative wintertime AMO years trade winds are typically stronger between 10°N and 30

  12. Synthesis and characterization of porous metal oxides and desulfurization studies of sulfur containing compounds

    NASA Astrophysics Data System (ADS)

    Garces Trujillo, Hector Fabian

    This thesis contains two parts: 1) synthesis and characterization of porous metal oxides that include zinc oxide and a porous mixed-valent manganese oxide with an amorphous structure (AMO) 2) the desulfurization studies for the removal of sulfur compounds. Zinc oxide with different nano-scale morphologies may result in various porosities with different adsorption capabilities. A tunable shape microwave synthesis of ZnO nano-spheres in a co-solvent mixture is presented. The ZnO nano-sphere material is investigated as a desulfurizing sorbent in a fixed bed reactor in the temperature range 200 to 400 °C and compared with ZnO nanorods and platelet-like morphologies. Fresh and sulfided materials were characterized by X-ray diffraction (XRD), BET specific surface area, pore volume, scanning electron microscopy (SEM), X-ray energy dispersive spectroscopy (SEM/EDX), Raman spectroscopy, and thermogravimetric analysis (TGA). The tunable shape microwave synthesis of ZnO presents a high sulfur sorption capacity at temperatures as low as 200 °C which accounts for a three and four fold enhancement over the other preparations presented in this work, and reached 76 % of the theoretical sulfur capacity (TSC) at 300 °C. Another ZnO material with a bimodal micro- and mesopore size distribution investigated as a desulfurizing sorbent presents a sorption capacity that reaches 87% of the theoretical value for desulfurization at 400 °C at breakthrough time. A deactivation model that considers the activity of the solid reactant was used to fit the experimental data. Good agreement between the experimental breakthrough curves and the model predictions are obtained. Manganese oxides are a type of metal oxide materials commonly used in catalytic applications. Little is known about the adsorption capabilities for the removal of sulfur compounds. One of these manganese oxides; amorphous manganese oxide (AMO) is highly promising material for low temperature sorption processes. Amorphous

  13. Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China.

    PubMed

    Liu, Junjie; Yu, Zhenhua; Yao, Qin; Sui, Yueyu; Shi, Yu; Chu, Haiyan; Tang, Caixian; Franks, Ashley E; Jin, Jian; Liu, Xiaobing; Wang, Guanghua

    2018-01-01

    Black soils (Mollisols) of northeast China are highly productive and agriculturally important for food production. Ammonia-oxidizing microbes play an important role in N cycling in the black soils. However, the information related to the composition and distribution of ammonia-oxidizing microbes in the black soils has not yet been addressed. In this study, we used the amoA gene to quantify the abundance and community composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) across the black soil zone. The amoA abundance of AOA was remarkably larger than that of AOB, with ratios of AOA/AOB in the range from 3.1 to 91.0 across all soil samples. The abundance of AOA amoA was positively correlated with total soil C content ( p < 0.001) but not with soil pH ( p > 0.05). In contrast, the abundance of AOB amoA positively correlated with soil pH ( p = 0.009) but not with total soil C. Alpha diversity of AOA did not correlate with any soil parameter, however, alpha diversity of AOB was affected by multiple soil factors, such as soil pH, total P, N, and C, available K content, and soil water content. Canonical correspondence analysis indicated that the AOA community was mainly affected by the sampling latitude, followed by soil pH, total P and C; while the AOB community was mainly determined by soil pH, as well as total P, C and N, water content, and sampling latitude, which highlighted that the AOA community was more geographically distributed in the black soil zone of northeast China than AOB community. In addition, the pairwise analyses showed that the potential nitrification rate (PNR) was not correlated with alpha diversity but weakly positively with the abundance of the AOA community ( p = 0.048), whereas PNR significantly correlated positively with the richness ( p = 0.003), diversity ( p = 0.001) and abundance ( p < 0.001) of the AOB community, which suggested that AOB community might make a greater contribution to nitrification than AOA

  14. Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China

    PubMed Central

    Liu, Junjie; Yu, Zhenhua; Yao, Qin; Sui, Yueyu; Shi, Yu; Chu, Haiyan; Tang, Caixian; Franks, Ashley E.; Jin, Jian; Liu, Xiaobing; Wang, Guanghua

    2018-01-01

    Black soils (Mollisols) of northeast China are highly productive and agriculturally important for food production. Ammonia-oxidizing microbes play an important role in N cycling in the black soils. However, the information related to the composition and distribution of ammonia-oxidizing microbes in the black soils has not yet been addressed. In this study, we used the amoA gene to quantify the abundance and community composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) across the black soil zone. The amoA abundance of AOA was remarkably larger than that of AOB, with ratios of AOA/AOB in the range from 3.1 to 91.0 across all soil samples. The abundance of AOA amoA was positively correlated with total soil C content (p < 0.001) but not with soil pH (p > 0.05). In contrast, the abundance of AOB amoA positively correlated with soil pH (p = 0.009) but not with total soil C. Alpha diversity of AOA did not correlate with any soil parameter, however, alpha diversity of AOB was affected by multiple soil factors, such as soil pH, total P, N, and C, available K content, and soil water content. Canonical correspondence analysis indicated that the AOA community was mainly affected by the sampling latitude, followed by soil pH, total P and C; while the AOB community was mainly determined by soil pH, as well as total P, C and N, water content, and sampling latitude, which highlighted that the AOA community was more geographically distributed in the black soil zone of northeast China than AOB community. In addition, the pairwise analyses showed that the potential nitrification rate (PNR) was not correlated with alpha diversity but weakly positively with the abundance of the AOA community (p = 0.048), whereas PNR significantly correlated positively with the richness (p = 0.003), diversity (p = 0.001) and abundance (p < 0.001) of the AOB community, which suggested that AOB community might make a greater contribution to nitrification than AOA community

  15. Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid.

    PubMed

    Ro, Dae-Kyun; Ouellet, Mario; Paradise, Eric M; Burd, Helcio; Eng, Diana; Paddon, Chris J; Newman, Jack D; Keasling, Jay D

    2008-11-04

    Due to the global occurrence of multi-drug-resistant malarial parasites (Plasmodium falciparum), the anti-malarial drug most effective against malaria is artemisinin, a natural product (sesquiterpene lactone endoperoxide) extracted from sweet wormwood (Artemisia annua). However, artemisinin is in short supply and unaffordable to most malaria patients. Artemisinin can be semi-synthesized from its precursor artemisinic acid, which can be synthesized from simple sugars using microorganisms genetically engineered with genes from A. annua. In order to develop an industrially competent yeast strain, detailed analyses of microbial physiology and development of gene expression strategies are required. Three plant genes coding for amorphadiene synthase, amorphadiene oxidase (AMO or CYP71AV1), and cytochrome P450 reductase, which in concert divert carbon flux from farnesyl diphosphate to artemisinic acid, were expressed from a single plasmid. The artemisinic acid production in the engineered yeast reached 250 microg mL(-1) in shake-flask cultures and 1 g L(-1) in bio-reactors with the use of Leu2d selection marker and appropriate medium formulation. When plasmid stability was measured, the yeast strain synthesizing amorphadiene alone maintained the plasmid in 84% of the cells, whereas the yeast strain synthesizing artemisinic acid showed poor plasmid stability. Inactivation of AMO by a point-mutation restored the high plasmid stability, indicating that the low plasmid stability is not caused by production of the AMO protein but by artemisinic acid synthesis or accumulation. Semi-quantitative reverse-transcriptase (RT)-PCR and quantitative real time-PCR consistently showed that pleiotropic drug resistance (PDR) genes, belonging to the family of ATP-Binding Cassette (ABC) transporter, were massively induced in the yeast strain producing artemisinic acid, relative to the yeast strain producing the hydrocarbon amorphadiene alone. Global transcriptional analysis by yeast

  16. Characterization of pinto bean high-starch fraction after air classification and extrustion

    USDA-ARS?s Scientific Manuscript database

    The properties of three bean flours (whole, high-starch fraction, and extruded) were studied to determine their potential applications. Significant differences in moisture, protein, resistant starch, total starch, lipids, ash, phytic acid, amino acid content, and fatty acid profile were observed amo...

  17. INFORMATION TECHNOLOGY AND U.S. ENERGY CONSUMPTION: ENERGY HOG, PRODUCTIVITY TOOL, OR BOTH?

    EPA Science Inventory

    Journal Article by John A. "Skip" Laitner. Abstract: A signicant debate has emerged with respect to the energy requirements of the Internet. The popular literature has echoed a misleading study that incorrectly suggests the growth of the information economy will require huge amo...

  18. Relationships between day one piglet serum immunoglobulin immunocrit and subsequent growth, puberty attainment, litter size, and lactation performance

    USDA-ARS?s Scientific Manuscript database

    Colostrum affects gut and uterine gland development in the neonatal piglet, suggesting that subsequent growth and reproductive performance may be affected. Measuring immunoglobulin in piglet serum using the immunoglobulin immunocrit on day 1 of age provides a simple inexpensive indication of the amo...

  19. Solar thermotherapy reduces the titer of ‘Candidatus Liberibacter asiaticus’ while enhancing canopy growth in HLB-affected residential and commercial citrus

    USDA-ARS?s Scientific Manuscript database

    Huanglongbing (HLB), a systemic and destructive disease of citrus, is associated with three species of a-proteobacteria, ‘Candidatus Liberibacter asiaticus’ (Las), ‘Ca. L. africanus’ and ‘Ca. L. americanus’. Previous studies have found distinct variations in temperature sensitivity and tolerance amo...

  20. Effect of heavy metals on nitrification activity as measured by RNA- and DNA-based function-specific assays

    EPA Science Inventory

    Heavy metals can inhibit nitrification, a key process for nitrogen removal in wastewater treatment. The transcriptional responses of functional genes (amoA, hao, nirK and norB) were measured in conjunction with specific oxygen uptake rate (sOUR) for nitrifying enrichment cultures...

  1. Measurements and Modeling to Enhance Estimates of NH3 Total Deposition

    EPA Science Inventory

    Values for the total (wet + dry) deposition of ammonia are needed as input to nitrogen budget studies and ecological assessments. Concentrations of ammonia are measured at NADP’s Ammonia Monitoring Network (AMoN) sites. Research is focusing on the use of the concentration...

  2. Solar Cell Calibration and Measurement Techniques

    NASA Technical Reports Server (NTRS)

    Bailey, Sheila; Brinker, Dave; Curtis, Henry; Jenkins, Phillip; Scheiman, Dave

    1997-01-01

    The increasing complexity of space solar cells and the increasing international markets for both cells and arrays has resulted in workshops jointly sponsored by NASDA, ESA and NASA. These workshops are designed to obtain international agreement on standardized values for the AMO spectrum and constant, recommend laboratory measurement practices and establish a set of protocols for international comparison of laboratory measurements. A working draft of an ISO standard, WDI 5387, 'Requirements for Measurement and Calibration Procedures for Space Solar Cells' was discussed with a focus on the scope of the document, a definition of primary standard cell, and required error analysis for all measurement techniques. Working groups addressed the issues of Air Mass Zero (AMO) solar constant and spectrum, laboratory measurement techniques, and the international round robin methodology. A summary is presented of the current state of each area and the formulation of the ISO document.

  3. Solar Cell Calibration and Measurement Techniques

    NASA Technical Reports Server (NTRS)

    Bailey, Sheila; Brinker, Dave; Curtis, Henry; Jenkins, Phillip; Scheiman, Dave

    2004-01-01

    The increasing complexity of space solar cells and the increasing international markets for both cells and arrays has resulted in workshops jointly sponsored by NASDA, ESA and NASA. These workshops are designed to obtain international agreement on standardized values for the AMO spectrum and constant, recommend laboratory measurement practices and establish a set of protocols for international comparison of laboratory measurements. A working draft of an ISO standard, WD15387, "Requirements for Measurement and Calibration Procedures for Space Solar Cells" was discussed with a focus on the scope of the document, a definition of primary standard cell, and required error analysis for all measurement techniques. Working groups addressed the issues of Air Mass Zero (AMO) solar constant and spectrum, laboratory measurement techniques, and te international round robin methodology. A summary is presented of the current state of each area and the formulation of the ISO document.

  4. Optimal design study of high efficiency indium phosphide space solar cells

    NASA Technical Reports Server (NTRS)

    Jain, Raj K.; Flood, Dennis J.

    1990-01-01

    Recently indium phosphide solar cells have achieved beginning of life AMO efficiencies in excess of 19 pct. at 25 C. The high efficiency prospects along with superb radiation tolerance make indium phosphide a leading material for space power requirements. To achieve cost effectiveness, practical cell efficiencies have to be raised to near theoretical limits and thin film indium phosphide cells need to be developed. The optimal design study is described of high efficiency indium phosphide solar cells for space power applications using the PC-1D computer program. It is shown that cells with efficiencies over 22 pct. AMO at 25 C could be fabricated by achieving proper material and process parameters. It is observed that further improvements in cell material and process parameters could lead to experimental cell efficiencies near theoretical limits. The effect of various emitter and base parameters on cell performance was studied.

  5. Early opacification and subsequent in vivo clearing of a silicone intraocular lens.

    PubMed

    Nikrooyan, Idean; Anderson, Justin E

    2011-09-01

    To report a case of early opacification and spontaneous in vivo clearing of a silicone intraocular lens (IOL). A 79-year-old women underwent uncomplicated cataract extraction and subsequent implantation of a +21.5 D AMO Z9002 (Abbott Medical Optics, Santa Ana, CA) silicone lens. On postoperative day 1, the patient presented with a translucent, milky white appearing, diffuse IOL opacification. On postoperative day 8, the IOL periphery had cleared, but a full thickness haze persisted in the central portion of the optic. By postoperative day 14, the IOL had cleared. To date, the lens has remained clear. One possible mechanism might be exposure to industrial chemicals; however, the manufacturer reports no other similar lens opacities from this manufacturing batch of IOLs. We recommend that surgeons who implant or have implanted an AMO Z9002 silicone IOL and observe similar findings follow the patient closely for resolution of the haze.

  6. Ammonia oxidation rates and nitrification in the Arabian Sea

    NASA Astrophysics Data System (ADS)

    Newell, Silvia E.; Babbin, Andrew R.; Jayakumar, Amal; Ward, Bess B.

    2011-12-01

    Nitrification rates, as well as the relationships between rates and ammonia oxidizer abundance (both archaeal and bacterial), were investigated in the Arabian Sea. Ammonia oxidation rates were measured directly using 15N-NH4+stable isotope additions in gas-impermeable, trace metal clean trilaminate bags (500 mL) at in situ temperature. Tracer incubations were performed at three stations at depths above, below, and within the oxycline of the open-ocean oxygen minimum zone (OMZ). Ammonia oxidation rates were similar to previous open-ocean measurements, ranging from undetectable to 21.6 ± 0.1 nmol L-1 d-1. The highest rates at each station occurred at the primary nitrite maximum (above the OMZ), and rates were very low at depths greater than 900 m. The abundances of both ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) were estimated using theamoA gene by quantitative polymerase chain reaction (qPCR). Both AOA and AOB amoA were detected above, within, and below the OMZ, although the AOA were always more abundant than the AOB, by a factor of 35-216. Nitrification rates were not directly correlated to AOA or AOB amoA abundance. These rates offer new insight into the role of nitrification in the mesopelagic zone. The abundance of AOA amoA genes at 1000 m suggests that ˜50% of the microbial biomass could be autotrophic. Additionally, the integrated nitrification rate at depth implies that nitrification could consume most of the ammonium produced by the flux of organic carbon in the mesopelagic zone.

  7. Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray

    USGS Publications Warehouse

    Ward, B.B.; Eveillard, D.; Kirshtein, J.D.; Nelson, J.D.; Voytek, M.A.; Jackson, G.A.

    2007-01-01

    The relationship between environmental factors and functional gene diversity of ammonia-oxidizing bacteria (AOB) was investigated across a transect from the freshwater portions of the Chesapeake Bay and Choptank River out into the Sargasso Sea. Oligonucleotide probes (70-bp) designed to represent the diversity of ammonia monooxygenase (amoA) genes from Chesapeake Bay clone libraries and cultivated AOB were used to construct a glass slide microarray. Hybridization patterns among the probes in 14 samples along the transect showed clear variations in amoA community composition. Probes representing uncultivated members of the Nitrosospira-like AOB dominated the probe signal, especially in the more marine samples. Of the cultivated species, only Nitrosospira briensis was detected at appreciable levels. Discrimination analysis of hybridization signals detected two guilds. Guild 1 was dominated by the marine Nitrosospira-like probe signal, and Guild 2???s largest contribution was from upper bay (freshwater) sediment probes. Principal components analysis showed that Guild 1 was positively correlated with salinity, temperature and chlorophyll a concentration, while Guild 2 was positively correlated with concentrations of oxygen, dissolved organic carbon, and particulate nitrogen and carbon, suggesting that different amoA sequences represent organisms that occupy different ecological niches within the estuarine/marine environment. The trend from most diversity of AOB in the upper estuary towards dominance of a single type in the polyhaline region of the Bay is consistent with the declining importance of AOB with increasing salinity, and with the idea that AO-Archaea are the more important ammonia oxidizers in the ocean. ?? 2007 The Authors.

  8. Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil▿†

    PubMed Central

    Jung, Man-Young; Park, Soo-Je; Min, Deullae; Kim, Jin-Seog; Rijpstra, W. Irene C.; Sinninghe Damsté, Jaap S.; Kim, Geun-Joong; Madsen, Eugene L.; Rhee, Sung-Keun

    2011-01-01

    Soil nitrification is an important process for agricultural productivity and environmental pollution. Though one cultivated representative of ammonia-oxidizing Archaea from soil has been described, additional representatives warrant characterization. We describe an ammonia-oxidizing archaeon (strain MY1) in a highly enriched culture derived from agricultural soil. Fluorescence in situ hybridization microscopy showed that, after 2 years of enrichment, the culture was composed of >90% archaeal cells. Clone libraries of both 16S rRNA and archaeal amoA genes featured a single sequence each. No bacterial amoA genes could be detected by PCR. A [13C]bicarbonate assimilation assay showed stoichiometric incorporation of 13C into Archaea-specific glycerol dialkyl glycerol tetraethers. Strain MY1 falls phylogenetically within crenarchaeal group I.1a; sequence comparisons to “Candidatus Nitrosopumilus maritimus” revealed 96.9% 16S rRNA and 89.2% amoA gene similarities. Completed growth assays showed strain MY1 to be chemoautotrophic, mesophilic (optimum at 25°C), neutrophilic (optimum at pH 6.5 to 7.0), and nonhalophilic (optimum at 0.2 to 0.4% salinity). Kinetic respirometry assays showed that strain MY1's affinities for ammonia and oxygen were much higher than those of ammonia-oxidizing bacteria (AOB). The yield of the greenhouse gas N2O in the strain MY1 culture was lower but comparable to that of soil AOB. We propose that this new soil ammonia-oxidizing archaeon be designated “Candidatus Nitrosoarchaeum koreensis.” PMID:22003023

  9. Use of functional gene expression and respirometry to study wastewater nitrification activity after exposure to low doses of copper.

    PubMed

    Kapoor, Vikram; Li, Xuan; Chandran, Kartik; Impellitteri, Christopher A; Santo Domingo, Jorge W

    2016-04-01

    Autotrophic nitrification in biological nitrogen removal systems has been shown to be sensitive to the presence of heavy metals in wastewater treatment plants. Using transcriptase-quantitative polymerase chain reaction (RT-qPCR) data, we examined the effect of copper on the relative expression of functional genes (i.e., amoA, hao, nirK, and norB) involved in redox nitrogen transformation in batch enrichment cultures obtained from a nitrifying bioreactor operated as a continuous reactor (24-h hydraulic retention time). 16S ribosomal RNA (rRNA) gene next-generation sequencing showed that Nitrosomonas-like populations represented 60-70% of the bacterial community, while other nitrifiers represented <5%. We observed a strong correspondence between the relative expression of amoA and hao and ammonia removal in the bioreactor. There were no considerable changes in the transcript levels of amoA, hao, nirK, and norB for nitrifying samples exposed to copper dosages ranging from 0.01 to 10 mg/L for a period of 12 h. Similar results were obtained when ammonia oxidation activity was measured via specific oxygen uptake rate (sOUR). The lack of nitrification inhibition by copper at doses lower than 10 mg/L may be attributed to the role of copper as cofactor for ammonia monooxygenase or to the sub-inhibitory concentrations of copper used in this study. Overall, these results demonstrate the use of molecular methods combined with conventional respirometry assays to better understand the response of wastewater nitrifying systems to the presence of copper.

  10. Understanding the interdecadal variabilities of East Asian summer precipitation: from a perspective of joint influence of oceanic forcings

    NASA Astrophysics Data System (ADS)

    Zhang, Z.; Sun, X.; Yang, X. Q.

    2017-12-01

    East Asian summer precipitation (EASP) is highly complicated in both temporal and spatial variabilities at interdecadal time scales, with various time periods and anomalous spatial distribution patterns. The joint influences of three dominant interdecadal signals, i.e., Pacific Decadal Oscillation (PDO), Atlantic Multidecadal Oscillation (AMO) and Indian Ocean Basin Mode (IOBM), are revealed to be responsible for most of the interdecadal variabilities of EASP in this study, which, however, are not the simply linear combinations of their individual climate effects. Specifically, when PDO and AMO are in antiphase, SST anomalies of the same signs appear in both North Pacific and North Atlantic, the Asian westerly jet (AWJ) is accelerated and acts as a waveguide, favoring a zonally orientated Rossby wave train from North Atlantic to northern East Asia across the mid-high latitude Eurasia. Correspondingly, interdecadal precipitation anomalies exhibit a meridional tripole mode over East China. When PDO and AMO are in phase with oppositely signed SST anomalies in North Pacific and North Atlantic, the waveguide mechanism doesn't work since AWJ is significantly reduced, and the Rossby wave train from North Atlantic travels to South Asia along the great circle path, causing anomalous Indian summer monsoon precipitation (ISMP). In turn, by triggering another Rossby wave trains along both the mid-latitudes and coastal regions of East Asia, the ISMP anomalies induce a meridional dipole mode of interdecadal precipitation anomalies over East China. Through the ISMP and the same dynamical processes, IOBM is more important for the interdecadal precipitation anomalies over northern East Asia.

  11. Decadal climate variability and the spatial organization of deep hydrological drought

    NASA Astrophysics Data System (ADS)

    Barros, Ana P.; Hodes, Jared L.; Arulraj, Malarvizhi

    2017-10-01

    Empirical Orthogonal Function (EOF), wavelet, and wavelet coherence analysis of baseflow time-series from 126 streamgauges (record-length > 50 years; small and mid-size watersheds) in the US South Atlantic (USSA) region reveal three principal modes of space-time variability: (1) a region-wide dominant mode tied to annual precipitation that exhibits non-stationary decadal variability after the mid 1990s concurrent with the warming of the AMO (Atlantic Multidecadal Oscillation); (2) two spatial modes, east and west of the Blue Ridge, exhibiting nonstationary seasonal to sub-decadal variability before and after 1990 attributed to complex nonlinear interactions between ENSO and AMO impacting precipitation and recharge; and (3) deep (decadal) and shallow (< 6 years) space-time modes of groundwater variability separating basins with high and low annual mean baseflow fraction (MBF) by physiographic region. The results explain the propagation of multiscale climate variability into the regional groundwater system through recharge modulated by topography, geomorphology, and geology to determine the spatial organization of baseflow variability at decadal (and longer) time-scales, that is, deep hydrologic drought. Further, these findings suggest potential for long-range predictability of hydrological drought in small and mid-size watersheds, where baseflow is a robust indicator of nonstationary yield capacity of the underlying groundwater basins. Predictive associations between climate mode indices and deep baseflow (e.g. persistent decreases of the decadal-scale components of baseflow during the cold phase of the AMO in the USSA) can be instrumental toward improving forecast lead-times and long-range mitigation of severe drought.

  12. Evidence for biological nitrification inhibition in Brachiaria pastures

    PubMed Central

    Subbarao, G. V.; Nakahara, K.; Hurtado, M. P.; Ono, H.; Moreta, D. E.; Salcedo, A. F.; Yoshihashi, A. T.; Ishikawa, T.; Ishitani, M.; Ohnishi-Kameyama, M.; Yoshida, M.; Rondon, M.; Rao, I. M.; Lascano, C. E.; Berry, W. L.; Ito, O.

    2009-01-01

    Nitrification, a key process in the global nitrogen cycle that generates nitrate through microbial activity, may enhance losses of fertilizer nitrogen by leaching and denitrification. Certain plants can suppress soil-nitrification by releasing inhibitors from roots, a phenomenon termed biological nitrification inhibition (BNI). Here, we report the discovery of an effective nitrification inhibitor in the root-exudates of the tropical forage grass Brachiaria humidicola (Rendle) Schweick. Named “brachialactone,” this inhibitor is a recently discovered cyclic diterpene with a unique 5-8-5-membered ring system and a γ-lactone ring. It contributed 60–90% of the inhibitory activity released from the roots of this tropical grass. Unlike nitrapyrin (a synthetic nitrification inhibitor), which affects only the ammonia monooxygenase (AMO) pathway, brachialactone appears to block both AMO and hydroxylamine oxidoreductase enzymatic pathways in Nitrosomonas. Release of this inhibitor is a regulated plant function, triggered and sustained by the availability of ammonium (NH4+) in the root environment. Brachialactone release is restricted to those roots that are directly exposed to NH4+. Within 3 years of establishment, Brachiaria pastures have suppressed soil nitrifier populations (determined as amoA genes; ammonia-oxidizing bacteria and ammonia-oxidizing archaea), along with nitrification and nitrous oxide emissions. These findings provide direct evidence for the existence and active regulation of a nitrification inhibitor (or inhibitors) release from tropical pasture root systems. Exploiting the BNI function could become a powerful strategy toward the development of low-nitrifying agronomic systems, benefiting both agriculture and the environment. PMID:19805171

  13. Progress in p(+)n InP solar cells fabricated by thermal diffusion

    NASA Technical Reports Server (NTRS)

    Flood, D. J.; Brinker, D. J.; Weinberg, I.; Vargas, C.; Faur, Mircea; Faur, Maria; Goradia, C.; Goradia, M.; Fatemi, N. S.

    1993-01-01

    The performance results of our most recently thermally diffused InP solar cells using the p(+)n (Cd,S) structures are presented. We have succeeded in fabricating cells with measured AMO, 25 C V(sub oc) exceeding 880 mV (bare cells) which to the best of our knowledge is higher than previously reported V(sub oc) values for any InP homojunction solar cells. The cells were fabricated by thinning the emitter, after Au-Zn front contacting, from its initial thickness of about 4.5 microns to about 0.6 microns. After thinning, the exposed surface of the emitter was passivated by a thin (approximately 50A) P-rich oxide. Based on the measured EQY and J(sub sc)-V(sub oc) characteristics of our experimental high V(sub oc) p(+)n InP solar cells, we project that reducing the emitter thickness to 0.3 microns, using an optimized AR coating, maintaining the surface hole concentration of 3 x 10(exp 18)cm(sup -3), reducing the grid shadowing from actual 10.55 percent to 6 percent and reducing the contact resistance will increase the actual measured 12.57 percent AMO 25 C efficiency to about 20.1 percent. By using our state-of-the-art p(+)n structures which have a surface hole concentration of 4 x 10(exp 18)cm(sup -3) and slightly improving the front surface passivation, an even higher practically achievable AMO, 25 C efficiency of 21.3 percent is projected.

  14. Applying the tools of physics to teaching physics

    NASA Astrophysics Data System (ADS)

    Wieman, Carl

    2003-05-01

    The strengths of modern AMO physics are its solid foundation on objective quantitative data, the rapid widespread dissemination and duplication of ideas, results, and successful approaches, and the rapid utilization of technological developments to achieve new capabilities. Unfortunately AMO physicists usually abandon these powerful tools in their approach to the teaching of physics and instead rely on an approach that would be considered little more than individual superstition if used in the context of actual AMO science. Choices of content and presentation in teaching are usually based on tradition or totally subjective judgments of the instructor. I will discuss my efforts to approach teaching physics much as I have done experimental physics. This includes: collecting and utilizing data (both my own and that from the research of others), developing a strategy for dealing with numerous degrees of freedom that one cannot control nearly as well as one would like (whether they are atomic interactions or student attitudes), optimizing the use of the time and money available, and taking advantage of useful new technology. The latter discussion will include some specifics on using technology that allows real time measurement of student learning and engagement in a large class and the development and use of interactive applets to facilitate conceptual understanding. Achieving true understanding and appreciation of physics by introductory students is a major challenge. Fortunately, there is sufficient room for improvement in the current educational system that one can fall far short of that ideal and still be making major progress.

  15. Short-term effects of TiO2, CeO2, and ZnO nanoparticles on metabolic activities and gene expression of Nitrosomonas europaea.

    PubMed

    Yu, Ran; Fang, Xiaohua; Somasundaran, Ponisseril; Chandran, Kartik

    2015-06-01

    Nanosized TiO2 (n-TiO2), CeO2 (n-CeO2), and ZnO (n-ZnO) and bulk ZnO were chosen for a 4-h exposure study on a model ammonia oxidizing bacterium, Nitrosomonas europaea. n-ZnO displayed the most serious cytotoxicity while n-TiO2 was the least toxic one. The change of cell morphologies, the retardance of specific oxygen uptake rates and ammonia oxidation rates, and the depression of amoA gene expressions under NP stresses were generally observed when the cell densities and membrane integrities were not significantly impaired yet. The TEM imaging and the synchrotron X-ray fluorescence microscopy of the NPs impacted cells revealed the increase of the corresponding intracellular Ti, Ce or Zn contents and suggested the intracellular NP accumulation. The elevation of intracellular S contents accompanied with higher K contents implied the possible activation of thiol-containing glutathione and thioredoxin production for NP stress alleviation. The NP cytotoxicity was not always a function of NP concentration. The 200 mg L(-1) n-TiO2 or n-CeO2 impacted cells displayed the similar ammonia oxidation activities but higher amoA gene expression levels than the 20 mg L(-1) NPs impacted ones. Such phenomenon further indicated the possible establishment of an anti-toxicity mechanism in N. europaea at the genetic level to redeem the weakened AMO activities along with the NP aggregation effects. Copyright © 2015 Elsevier Ltd. All rights reserved.

  16. Autotrophic growth of nitrifying community in an agricultural soil

    PubMed Central

    Xia, Weiwei; Zhang, Caixia; Zeng, Xiaowei; Feng, Youzhi; Weng, Jiahua; Lin, Xiangui; Zhu, Jianguo; Xiong, Zhengqin; Xu, Jian; Cai, Zucong; Jia, Zhongjun

    2011-01-01

    The two-step nitrification process is an integral part of the global nitrogen cycle, and it is accomplished by distinctly different nitrifiers. By combining DNA-based stable isotope probing (SIP) and high-throughput pyrosequencing, we present the molecular evidence for autotrophic growth of ammonia-oxidizing bacteria (AOB), ammonia-oxidizing archaea (AOA) and nitrite-oxidizing bacteria (NOB) in agricultural soil upon ammonium fertilization. Time-course incubation of SIP microcosms indicated that the amoA genes of AOB was increasingly labeled by 13CO2 after incubation for 3, 7 and 28 days during active nitrification, whereas labeling of the AOA amoA gene was detected to a much lesser extent only after a 28-day incubation. Phylogenetic analysis of the 13C-labeled amoA and 16S rRNA genes revealed that the Nitrosospira cluster 3-like sequences dominate the active AOB community and that active AOA is affiliated with the moderately thermophilic Nitrososphaera gargensis from a hot spring. The higher relative frequency of Nitrospira-like NOB in the 13C-labeled DNA suggests that it may be more actively involved in nitrite oxidation than Nitrobacter-like NOB. Furthermore, the acetylene inhibition technique showed that 13CO2 assimilation by AOB, AOA and NOB occurs only when ammonia oxidation is not blocked, which provides strong hints for the chemolithoautotrophy of nitrifying community in complex soil environments. These results show that the microbial community of AOB and NOB dominates the nitrification process in the agricultural soil tested. PMID:21326337

  17. Transcriptional Response of Nitrifying Communities to Wetting of Dry Soil

    PubMed Central

    Firestone, Mary K.

    2013-01-01

    The first rainfall following a severe dry period provides an abrupt water potential change that is both an acute physiological stress and a defined stimulus for the reawakening of soil microbial communities. We followed the responses of indigenous communities of ammonia-oxidizing bacteria, ammonia-oxidizing archaea, and nitrite-oxidizing bacteria to the addition of water to laboratory incubations of soils taken from two California annual grasslands following a typically dry Mediterranean summer. By quantifying transcripts for a subunit of bacterial and archaeal ammonia monooxygenases (amoA) and a bacterial nitrite oxidoreductase (nxrA) in soil from 15 min to 72 h after water addition, we identified transcriptional response patterns for each of these three groups of nitrifiers. An increase in quantity of bacterial amoA transcripts was detectable within 1 h of wet-up and continued until the size of the ammonium pool began to decrease, reflecting a possible role of transcription in upregulation of nitrification after drought-induced stasis. In one soil, the pulse of amoA transcription lasted for less than 24 h, demonstrating the transience of transcriptional pools and the tight coupling of transcription to the local soil environment. Analysis of 16S rRNA using a high-density microarray suggested that nitrite-oxidizing Nitrobacter spp. respond in tandem with ammonia-oxidizing bacteria while nitrite-oxidizing Nitrospina spp. and Nitrospira bacteria may not. Archaeal ammonia oxidizers may respond slightly later than bacterial ammonia oxidizers but may maintain elevated transcription longer. Despite months of desiccation-induced inactivation, we found rapid transcriptional response by all three groups of soil nitrifiers. PMID:23524666

  18. Exergaming: Hope for future physical activity? or blight on mankind?

    USDA-ARS?s Scientific Manuscript database

    Higher levels of moderate to vigorous physical activity, and maybe even light physical activity, have been related to better health, motor skills, and cognitive outcomes in virtually all age and ability groups. However, most people in general are not prone to enjoy and participate in substantial amo...

  19. Characterization of terrestrial solar cells for space applications: Electrical characteristics of thin Westinghouse dendritic web cells as a function of solar intensity, temperature, and incidence angle

    NASA Technical Reports Server (NTRS)

    Stella, P. M.; Anspaugh, B. E.

    1985-01-01

    Electrical characteristics of thin (100- and 140-micron) Westinghouse dendritic-web N/P silicon solar cells are presented in graphical and tabular format as a function of solar illumination intensity and temperature. Performance is also shown as a function of solar illlumination angle of incidence for AMO.

  20. Langley program of GaAs solar cells. [emphasizing energy conversion efficiency and radiation resistance

    NASA Technical Reports Server (NTRS)

    Conway, E. J.

    1979-01-01

    A brief overview of the development of GaAs solar cell technology is provided. An 18 to 20 percent AMO efficiency, stability under radiation and elevated-temperature operation, and high power-to-weight ratio are among the factors studied. Cell cost and availability are also examined.

  1. Evidence of Genetic Differentiation for Hawaii Insular False Killer Whales (Pseudorca crassidens)

    DTIC Science & Technology

    2010-05-01

    derived from beluga whales ( Delphinapterus leucas ) (Buchanan et al., 1996), EV94t derived from humpback whales (Megaptera novaenglia) (Valsecchi and Amos...Buchanan, F. C., Friesen, M. K., Littlejohn, R. P., and Clayton, J. W. 1996. Microsatellites from the beluga whale Delphinapterus leucas . Mol. Ecol. 5:571

  2. Successful Strategies: Building a School-to-Careers System.

    ERIC Educational Resources Information Center

    Thiers, Naomi, Ed.

    The following papers are included: "Building a Broad-Based Partnership" (Randy Wallace); "Creating a Partnership Agreement" (M. Amos Clifford, Robyn Flores); "Forming True Partnerships with Employers" (Lee W. Sloan); "Choosing a Model for Your School-to-Careers System" (Patty Williamson); "Case Study: Career Academy Model" (Shirley Earlise…

  3. Genome-Wide Association Mapping for Intelligence in Military Working Dogs: Development of Advanced Classification Algorithm for Genome-Wide Single Nucleotide Polymorphism (SNP) Data Analysis

    DTIC Science & Technology

    2011-04-01

    critical. 5. REFERENCES Almasy, L, Blangero, J. (2009) “Human QTL linkage mapping.” Genetica 136:333-340. Amos, CI. (2007) “Successful...quantitative trait loci.” Genetica 136:237-243. Ward, JH, Hook, ME. “A Hierarchical Grouping Procedure Applied to a Problem of Grouping Profiles

  4. Genome-Wide Association Mapping for Intelligence in Military Working Dogs: Canine Cohort, Canine Intelligence Assessment Regimen, Genome-Wide Single Nucleotide Polymorphism (SNP) Typing, and Unsupervised Classification Algorithm for Genome-Wide Association Data Analysis

    DTIC Science & Technology

    2011-09-01

    Almasy, L, Blangero, J. (2009) Human QTL linkage mapping. Genetica 136:333-340. Amos, CI. (2007) Successful design and conduct of genome-wide...quantitative trait loci. Genetica 136:237-243. Skol AD, Scott LJ, Abecasis GR, Boehnke M. (2006) Joint analysis is more efficient than replication

  5. Coetzeemyia, a new subgenus of Aedes, and a Redescription of the Holotype Female of Aedes (Coetzeemyia) fryeri (Theobald) (Diptera: Culicidae)

    DTIC Science & Technology

    2010-10-06

    probably constitute an important larval habitat for this species. Females are autogenous in the first ovarian cycle and anautogenous in the second...Amos, D.W. (1944) Mosquito Control Training Manual. Suva, Fiji. Times & Herald. 43 pp. Belkin, J.N. (1962) The mosquitoes of the South Pacific

  6. seXY: a tool for sex inference from genotype arrays.

    PubMed

    Qian, David C; Busam, Jonathan A; Xiao, Xiangjun; O'Mara, Tracy A; Eeles, Rosalind A; Schumacher, Frederick R; Phelan, Catherine M; Amos, Christopher I

    2017-02-15

    Checking concordance between reported sex and genotype-inferred sex is a crucial quality control measure in genome-wide association studies (GWAS). However, limited insights exist regarding the true accuracy of software that infer sex from genotype array data. We present seXY, a logistic regression model trained on both X chromosome heterozygosity and Y chromosome missingness, that consistently demonstrated >99.5% sex inference accuracy in cross-validation for 889 males and 5,361 females enrolled in prostate cancer and ovarian cancer GWAS. Compared to PLINK, one of the most popular tools for sex inference in GWAS that assesses only X chromosome heterozygosity, seXY achieved marginally better male classification and 3% more accurate female classification. https://github.com/Christopher-Amos-Lab/seXY. Christopher.I.Amos@dartmouth.edu. Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

  7. Calculation of near optimum design of InP/In(0.53)Ga(0.47)As monolithic tandem solar cells

    NASA Technical Reports Server (NTRS)

    Renaud, P.; Vilela, M. F.; Freundlich, A.; Medelci, N.; Bensaoula, A.

    1994-01-01

    An analysis of InP/GaAs tandem solar cell structure has been undertaken to allow for maximum AMO conversion efficiencies (space applications) while still taking into account both the theoretical and technological limitations. The dependence of intrinsic and extrinsic parameters such as diffusion lengths and generation-recombination (GR) lifetimes on N/P and P/N devices performances are clearly demonstrated. We also report for the first time the improvement attainable through the use of a new patterned tunnel junction as the inter cell ohmic interconnect. Such a design minimizes the light absorption in the interconnect region and leads to a noticeable increase in the cell efficiency. Our computations predict 27 percent AMO efficiency for N/P tandems with ideality factor gamma = 2 (GR lifetimes approximately equal 1 micron), and 36 percent for gamma = 1 (GR lifetimes approximately equals 100 microns). The method of optimization and the values of the physical and optical parameters are discussed.

  8. El diseño final del espectrógrafo de banco (EBASIM) para CASLEO

    NASA Astrophysics Data System (ADS)

    Simmons, J.; Levato, H.

    Utilizando el código de óptica ACCOS V se ha finalizado el diseño del espectrógrafo de banco para CASLEO. En una comunicación anterior habíamos indicado que utilizaríamos un colimador de 150 mm de diámetro con un radio de curvatura de 1540 mm. Para el espejo cámara, que tiene un diámetro de 200 mm, el radio de curvatura es de 1200 mm, ambos radios con una tolerancia no mayor a los 3 mm. En la presente, se informa sobre los detalles finales del cálculo del espectrógrafo que incluye el cómputo para 5 longitudes de onda diferentes y alrededor de 100 rayos. En todos los casos el 75 % de energía está dentro de un diámetro de 13 micrones. El diseño ha sido probado entre 3500 Å hasta 9000 Å con resultados satisfactorios.

  9. Climate impact on malaria in northern Burkina Faso.

    PubMed

    Tourre, Yves M; Vignolles, Cécile; Viel, Christian; Mounier, Flore

    2017-11-27

    The Paluclim project managed by the French Centre National d'Etudes Spatiales (CNES) found that total rainfall for a 3-month period is a confounding factor for the density of malaria vectors in the region of Nouna in the Sahel administrative territory of northern Burkina Faso. Following the models introduced in 1999 by Craig et al. and in 2003 by Tanser et al., a climate impact model for malaria risk (using different climate indices) was created. Several predictions of this risk at different temporal scales (i.e. seasonal, inter-annual and low-frequency) were assessed using this climate model. The main result of this investigation was the discovery of a significant link between malaria risk and low-frequency rainfall variability related to the Atlantic Multi-decadal Oscillation (AMO). This result is critical for the health information systems in this region. Knowledge of the AMO phases would help local authorities to organise preparedness and prevention of malaria, which is of particular importance in the climate change context.

  10. Approximate spin projection of three-component UHF wavefunctions - The states of the pentachlorocyclopentadienyl cation and the croconate dianion, C5O5/2-/

    NASA Technical Reports Server (NTRS)

    Phillips, D. H.; Schug, J. C.

    1974-01-01

    The approximate spin projection method of Amos et al. is extended to handle UHF wave functions having three significant components of differing multiplicity. An expression is given for the energy after single annihilation which differs from that of Amos and Hall. The new expression reproduces the results obtained from a previous exact calculation for which the weights and energies of the components are known. The extended approximate projection method is applied to the pi-electron UHF wave functions for the ground states of the pentachlorocyclopentadienyl cation and the croconate dianion, C5O5(2-). The results indicate a triplet ground state for the former and a singlet ground state for the latter, in agreement with experimental ESR susceptibility measurements for these molecular ions. C5C15(-) cannont be treated by restricted Hartree-Fock theory, due to its open-shell ground state. Incorrect results are obtained for the croconate dianion, if restricted Hartree-Fock theory and singly excited configuration interactions are utilized.

  11. Optomechanical and thermal design of the Multi-Application Solar Telescope for USO

    NASA Astrophysics Data System (ADS)

    Denis, Stefan; Coucke, Pierre; Gabriel, Eric; Delrez, Christophe; Venkatakrishnan, Parameshwaran

    2008-07-01

    The Multi-Application Solar Telescope (MAST) is a 50 cm diameter class telescope to be installed on the Udaipur Solar Observatory's Island on the Lake Fatehsagar in Udaipur, India. It is dedicated to solar observation. The telescope is designed, manufactured, assembled and installed on-site by the belgian company AMOS SA for the Udaipur Solar Observatory (USO), an academic division of the Physical Research Laboratory (PRL) in India. Despite its limited size, the telescope is expected to be competitive with respect to worldwide large and costly projects thanks to its versatility regarding science goals and also thanks to its demanding optomechanical and thermal specification. This paper describes the optomechanical and thermal design of this telescope and presents solutions adopted by AMOS to meet the specific requirements. The optical configuration of the telescope is based on an afocal off-axis gregorian combination integrated on an Alt.-Az. mechanical mount, with a suite of flat folding mirrors to provide the required stationary collimated beam.

  12. Multicentennial record of Labrador Sea primary productivity and sea-ice variability archived in coralline algal barium

    PubMed Central

    Chan, P.; Halfar, J.; Adey, W.; Hetzinger, S.; Zack, T.; Moore, G.W.K.; Wortmann, U. G.; Williams, B.; Hou, A.

    2017-01-01

    Accelerated warming and melting of Arctic sea-ice has been associated with significant increases in phytoplankton productivity in recent years. Here, utilizing a multiproxy approach, we reconstruct an annually resolved record of Labrador Sea productivity related to sea-ice variability in Labrador, Canada that extends well into the Little Ice Age (LIA; 1646 AD). Barium-to-calcium ratios (Ba/Ca) and carbon isotopes (δ13C) measured in long-lived coralline algae demonstrate significant correlations to both observational and proxy records of sea-ice variability, and show persistent patterns of co-variability broadly consistent with the timing and phasing of the Atlantic Multidecadal Oscillation (AMO). Results indicate reduced productivity in the Subarctic Northwest Atlantic associated with AMO cool phases during the LIA, followed by a step-wise increase from 1910 to present levels—unprecedented in the last 363 years. Increasing phytoplankton productivity is expected to fundamentally alter marine ecosystems as warming and freshening is projected to intensify over the coming century. PMID:28569839

  13. ONBORD (On-Board Navigation of Ballistic ORDnance): Gun-Launched Munitions Flight Controller

    DTIC Science & Technology

    2004-08-01

    U.S. Army Research Laboratory: Aberdeen Proving Ground, MD, in press. 3. Carden , F.; Jedlicka, R.; Henry, R. Telemetry Systems Engineering, Artech...ATTN SFAE AMO CAS R KIEBLER M MORATZ A HERRERA BLDG 162 SOUTH PICATINNY ARSENAL NJ 07806-5000 1 PROD MGR FOR JOINT LW 155-MM HOW

  14. The Theory of Planned Behavior within the Stages of the Transtheoretical Model: Latent Structural Modeling of Stage-Specific Prediction Patterns in Physical Activity

    ERIC Educational Resources Information Center

    Lippke, Sonia; Nigg, Claudio R.; Maddock, Jay E.

    2007-01-01

    This is the first study to test whether the stages of change of the transtheoretical model are qualitatively different through exploring discontinuity patterns in theory of planned behavior (TPB) variables using latent multigroup structural equation modeling (MSEM) with AMOS. Discontinuity patterns in terms of latent means and prediction patterns…

  15. Concerning Ken Hines …

    NASA Astrophysics Data System (ADS)

    McKellar, Bruce H. J.; Amos, Ken

    The following sections are included: * Obituary published in the `Age' newspaper * Curriculum vitae: Kenneth Charles Hines * Some short stories about Ken * Roger Hosking reminisces * Ken Amos reminisces * Vic Kowalenko reminisces * Zwi Barnea reminisces * "Legend's" Thursday lunch club award number four * Graeme Lister reminisces * Bob Dewar reminisces * Norm Frankel reminisces

  16. Outdoor Education--The Past Is Prologue to the Future.

    ERIC Educational Resources Information Center

    Rillo, Thomas J.

    Although educators and philosophers such as Johann Amos Comenius, Jean Jacques Rousseau, Pestalozzi, and Froebel stressed the study of nature, outdoor education really began with the first teaching-learning act which occurred outdoors. The human being, physiologically and psychologically adapted for outdoor existence, has only been indoors for…

  17. Phytophthora species recovered from irrigation reservoirs in Mississippi and Alabama nurseries and pathogenicity of three new species.

    USDA-ARS?s Scientific Manuscript database

    From a survey of containment ponds for Phytophthora spp. at one nursery each in Alabama and Mississippi, eight species and one taxon were recovered with P. gonapodyides dominant in cooler months and P. hydropathica in warmer months, accounting for 39.6% and 46.6% overall recovery, respectively. Amo...

  18. Phytophthora species recovered from irrigation reservoirs in Mississippi and Alabama nurseries and pathogenicity of three new species

    USDA-ARS?s Scientific Manuscript database

    From a survey of containment ponds for Phytophthora spp. at one nursery each in Alabama and Mississippi, eight species and one taxon were recovered with P. gonapodyides dominant in cooler months and P. hydropathica in warmer months, accounting for 39.6% and 46.6% overall recovery, respectively. Amo...

  19. Temporal changes in soil bacterial and archaeal communities with different fertilizers in tea orchards.

    PubMed

    Wang, Hua; Yang, Shao-hui; Yang, Jing-ping; Lv, Ya-min; Zhao, Xing; Pang, Ji-liang

    2014-11-01

    It is important to understand the effects of temporal changes in microbial communities in the acidic soils of tea orchards with different fertilizers. A field experiment involving organic fertilizer (OF), chemical fertilizer (CF), and unfertilized control (CK) treatments was arranged to analyze the temporal changes in the bacterial and archaeal communities at bimonthly intervals based on the 16S ribosomal RNA (rRNA) gene using terminal restriction fragment length polymorphism (T-RFLP) profiling. The abundances of total bacteria, total archaea, and selected functional genes (bacterial and archaeal amoA, bacterial narG, nirK, nirS, and nosZ) were determined by quantitative polymerase chain reaction (qPCR). The results indicate that the structures of bacterial and archaeal communities varied significantly with time and fertilization based on changes in the relative abundance of dominant T-RFs. The abundancy of the detected genes changed with time. The total bacteria, total archaea, and archaeal amoA were less abundant in July. The bacterial amoA and denitrifying genes were less abundant in September, except the nirK gene. The OF treatment increased the abundance of the observed genes, while the CF treatment had little influence on them. The soil temperature significantly affected the bacterial and archaeal community structures. The soil moisture was significantly correlated with the abundance of denitrifying genes. Of the soil chemical properties, soil organic carbon was the most important factor and was significantly correlated with the abundance of the detected genes, except the nirK gene. Overall, this study demonstrated the effects of both temporal alteration and organic fertilizer on the structures of microbial communities and the abundance of genes involved in the nitrogen cycle.

  20. Temporal changes in soil bacterial and archaeal communities with different fertilizers in tea orchards* #

    PubMed Central

    Wang, Hua; Yang, Shao-hui; Yang, Jing-ping; Lv, Ya-min; Zhao, Xing; Pang, Ji-liang

    2014-01-01

    It is important to understand the effects of temporal changes in microbial communities in the acidic soils of tea orchards with different fertilizers. A field experiment involving organic fertilizer (OF), chemical fertilizer (CF), and unfertilized control (CK) treatments was arranged to analyze the temporal changes in the bacterial and archaeal communities at bimonthly intervals based on the 16S ribosomal RNA (rRNA) gene using terminal restriction fragment length polymorphism (T-RFLP) profiling. The abundances of total bacteria, total archaea, and selected functional genes (bacterial and archaeal amoA, bacterial narG, nirK, nirS, and nosZ) were determined by quantitative polymerase chain reaction (qPCR). The results indicate that the structures of bacterial and archaeal communities varied significantly with time and fertilization based on changes in the relative abundance of dominant T-RFs. The abundancy of the detected genes changed with time. The total bacteria, total archaea, and archaeal amoA were less abundant in July. The bacterial amoA and denitrifying genes were less abundant in September, except the nirK gene. The OF treatment increased the abundance of the observed genes, while the CF treatment had little influence on them. The soil temperature significantly affected the bacterial and archaeal community structures. The soil moisture was significantly correlated with the abundance of denitrifying genes. Of the soil chemical properties, soil organic carbon was the most important factor and was significantly correlated with the abundance of the detected genes, except the nirK gene. Overall, this study demonstrated the effects of both temporal alteration and organic fertilizer on the structures of microbial communities and the abundance of genes involved in the nitrogen cycle. PMID:25367788

  1. Interdecadal variability in pan-Pacific and global SST, revisited

    NASA Astrophysics Data System (ADS)

    Tung, Ka-Kit; Chen, Xianyao; Zhou, Jiansong; Li, King-Fai

    2018-05-01

    Interest in the "Interdecadal Pacific Oscillation (IPO)" in the global SST has surged recently on suggestions that the Pacific may be the source of prominent interdecadal variations observed in the global-mean surface temperature possibly through the mechanism of low-frequency modulation of the interannual El Nino-Southern Oscillation (ENSO) phenomenon. IPO was defined by performing empirical orthogonal function (EOF) analysis of low-pass filtered SST. The low-pass filtering creates its unique set of mathematical problems—in particular, mode mixing—and has led to some questions, many unanswered. To understand what these EOFs are, we express them first in terms of the recently developed pairwise rotated EOFs of the unfiltered SST, which can largely separate the high and low frequency bands without resorting to filtering. As reported elsewhere, the leading rotated dynamical modes (after the global warming trend) of the unfiltered global SST are: ENSO, Pacific Decadal Oscillation (PDO), and Atlantic Multidecadal Oscillation (AMO). IPO is not among them. The leading principal component (PC) of the low-pass filtered global SST is usually defined as IPO and it is seen to comprise of ENSO, PDO and AMO in various proportions depending on the filter threshold. With decadal filtering, the contribution of the interannual ENSO is understandably negligible. The leading dynamical mode of the filtered global SST is mostly AMO, and therefore should not have been called the Interdecadal "Pacific" Oscillation. The leading dynamical mode of the filtered pan-Pacific SST is mostly PDO. This and other low-frequency variability that have the action center in the Pacific, from either the pan-Pacific or global SST, have near zero global mean.

  2. Abundance and diversity of ammonia-oxidizing archaea and bacteria on granular activated carbon and their fates during drinking water purification process.

    PubMed

    Niu, Jia; Kasuga, Ikuro; Kurisu, Futoshi; Furumai, Hiroaki; Shigeeda, Takaaki; Takahashi, Kazuhiko

    2016-01-01

    Ammonia is a precursor to trichloramine, which causes an undesirable chlorinous odor. Granular activated carbon (GAC) filtration is used to biologically oxidize ammonia during drinking water purification; however, little information is available regarding the abundance and diversity of ammonia-oxidizing archaea (AOA) and bacteria (AOB) associated with GAC. In addition, their sources and fates in water purification process remain unknown. In this study, six GAC samples were collected from five full-scale drinking water purification plants in Tokyo during summer and winter, and the abundance and community structure of AOA and AOB associated with GAC were studied in these two seasons. In summer, archaeal and bacterial amoA genes on GACs were present at 3.7 × 10(5)-3.9 × 10(8) gene copies/g-dry and 4.5 × 10(6)-4.2 × 10(8) gene copies/g-dry, respectively. In winter, archaeal amoA genes remained at the same level, while bacterial amoA genes decreased significantly for all GACs. No differences were observed in the community diversity of AOA and AOB from summer to winter. Phylogenetic analysis revealed high AOA diversity in group I.1a and group I.1b in raw water. Terminal-restriction fragment length polymorphism analysis of processed water samples revealed that AOA diversity decreased dramatically to only two OTUs in group I.1a after ozonation, which were identical to those detected on GAC. It suggests that ozonation plays an important role in determining AOA diversity on GAC. Further study on the cell-specific activity of AOA and AOB is necessary to understand their contributions to in situ nitrification performance.

  3. Processing-dependent thermal stability of a prototypical amorphous metal oxide

    NASA Astrophysics Data System (ADS)

    Zeng, Li; Moghadam, Mahyar M.; Buchholz, D. Bruce; Li, Ran; Keane, Denis T.; Dravid, Vinayak P.; Chang, Robert P. H.; Voorhees, Peter W.; Marks, Tobin J.; Bedzyk, Michael J.

    2018-05-01

    Amorphous metal oxides (AMOs) are important candidate materials for fabricating next-generation thin-film transistors. While much attention has been directed toward the synthesis and electrical properties of AMOs, less is known about growth conditions that allow AMOs to retain their desirable amorphous state when subjected to high operating temperatures. Using in situ x-ray scattering and level-set simulations, we explore the time evolution of the crystallization process for a set of amorphous I n2O3 thin films synthesized by pulsed-laser deposition at deposition temperatures (Td) of -50, -25, and 0 °C. The films were annealed isothermally and the degree of crystallinity was determined by a quantitative analysis of the time-evolved x-ray scattering patterns. As expected, for films grown at the same Td, an increase in the annealing temperature TA led to a shorter delay prior to the onset of crystallization, and a faster crystallization rate. Moreover, when lowering the deposition temperature by 25 °C, a 40 °C increase in annealing temperature is needed to achieve the same time interval for the crystals to grow from 10 to 90% volume fraction of the sample. Films grown at Td=0 ∘C exhibited strong cubic texture after crystallization. A level-set method was employed to quantitatively model the texture that develops in the microstructures and to determine key parameters, such as the interface growth velocity, the nucleation density, and the activation energy. The differences observed in the crystallization processes are attributed to the changes in the atomic structure of the oxide and possible nanocrystalline inclusions that formed during the deposition of the amorphous phase.

  4. The association of contact lens solution use and Acanthamoeba keratitis.

    PubMed

    Joslin, Charlotte E; Tu, Elmer Y; Shoff, Megan E; Booton, Gregory C; Fuerst, Paul A; McMahon, Timothy T; Anderson, Robert J; Dworkin, Mark S; Sugar, Joel; Davis, Faith G; Stayner, Leslie T

    2007-08-01

    To investigate Acanthamoeba keratitis (AK) risk factors. Diagnosis of AK, a rare but serious corneal infection, has recently increased significantly at the University of Illinois at Chicago (UIC) Cornea Service. Retrospective case-control study. settings: University, tertiary care hospital. patients: Fifty-five AK cases with contact lens use were diagnosed between May 1, 2003 and September 15, 2006. Clinic-matched controls with contact lens use were recruited. Subjects completed surveys targeting lens hygiene, contact lens solution use, and water exposure. main outcome measure: Acanthamoeba keratitis. Thirty-nine (73.6%) cases and 113 (65.3%) controls participated; 38 cases had complete contact lens data. Thirty-five of 38 cases (92.1%) and 47 of 100 controls (47.0%) used soft lenses. Analysis was performed on 30 cases and 39 controls with matched pairs with soft lens use. Exclusive use of Advance Medical Optics (AMO) Complete MoisturePlus Multi-Purpose Solution was independently associated with AK in multivariable analysis (55.2% vs 10.5%; odds ratio [OR], 16.67; 95% confidence interval [CI] 2.11 to 162.63; P = .008). However, 38.8% of cases reported no use of AMO Complete MoisturePlus Multi-Purpose Solution either alone or in combination with other solutions. Although not statistically significant, additional hygiene-related variables (solution "reuse," lack of "rubbing," and showering with lenses) suggest a pattern of risk. AMO Complete MoisturePlus Multi-Purpose Solution use is independently associated with AK among soft contact lens users. However, it does not explain all cases, suggesting additional factors. Further research into environmental risk factors and hygiene practices is warranted, especially considering this is the second outbreak of an atypical, contact lens-related infection.

  5. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota.

    PubMed

    Oton, Eduard Vico; Quince, Christopher; Nicol, Graeme W; Prosser, James I; Gubry-Rangin, Cécile

    2016-01-01

    Thaumarchaeota form a ubiquitously distributed archaeal phylum, comprising both the ammonia-oxidising archaea (AOA) and other archaeal groups in which ammonia oxidation has not been demonstrated (including Group 1.1c and Group 1.3). The ecology of AOA in terrestrial environments has been extensively studied using either a functional gene, encoding ammonia monooxygenase subunit A (amoA) or 16S ribosomal RNA (rRNA) genes, which show phylogenetic coherence with respect to soil pH. To test phylogenetic congruence between these two markers and to determine ecological coherence in all Thaumarchaeota, we performed high-throughput sequencing of 16S rRNA and amoA genes in 46 UK soils presenting 29 available contextual soil characteristics. Adaptation to pH and organic matter content reflected strong ecological coherence at various levels of taxonomic resolution for Thaumarchaeota (AOA and non-AOA), whereas nitrogen, total mineralisable nitrogen and zinc concentration were also important factors associated with AOA thaumarchaeotal community distribution. Other significant associations with environmental factors were also detected for amoA and 16S rRNA genes, reflecting different diversity characteristics between these two markers. Nonetheless, there was significant statistical congruence between the markers at fine phylogenetic resolution, supporting the hypothesis of low horizontal gene transfer between Thaumarchaeota. Group 1.1c Thaumarchaeota were also widely distributed, with two clusters predominating, particularly in environments with higher moisture content and organic matter, whereas a similar ecological pattern was observed for Group 1.3 Thaumarchaeota. The ecological and phylogenetic congruence identified is fundamental to understand better the life strategies, evolutionary history and ecosystem function of the Thaumarchaeota.

  6. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota

    PubMed Central

    Oton, Eduard Vico; Quince, Christopher; Nicol, Graeme W; Prosser, James I; Gubry-Rangin, Cécile

    2016-01-01

    Thaumarchaeota form a ubiquitously distributed archaeal phylum, comprising both the ammonia-oxidising archaea (AOA) and other archaeal groups in which ammonia oxidation has not been demonstrated (including Group 1.1c and Group 1.3). The ecology of AOA in terrestrial environments has been extensively studied using either a functional gene, encoding ammonia monooxygenase subunit A (amoA) or 16S ribosomal RNA (rRNA) genes, which show phylogenetic coherence with respect to soil pH. To test phylogenetic congruence between these two markers and to determine ecological coherence in all Thaumarchaeota, we performed high-throughput sequencing of 16S rRNA and amoA genes in 46 UK soils presenting 29 available contextual soil characteristics. Adaptation to pH and organic matter content reflected strong ecological coherence at various levels of taxonomic resolution for Thaumarchaeota (AOA and non-AOA), whereas nitrogen, total mineralisable nitrogen and zinc concentration were also important factors associated with AOA thaumarchaeotal community distribution. Other significant associations with environmental factors were also detected for amoA and 16S rRNA genes, reflecting different diversity characteristics between these two markers. Nonetheless, there was significant statistical congruence between the markers at fine phylogenetic resolution, supporting the hypothesis of low horizontal gene transfer between Thaumarchaeota. Group 1.1c Thaumarchaeota were also widely distributed, with two clusters predominating, particularly in environments with higher moisture content and organic matter, whereas a similar ecological pattern was observed for Group 1.3 Thaumarchaeota. The ecological and phylogenetic congruence identified is fundamental to understand better the life strategies, evolutionary history and ecosystem function of the Thaumarchaeota. PMID:26140533

  7. pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils.

    PubMed

    Stempfhuber, Barbara; Engel, Marion; Fischer, Doreen; Neskovic-Prit, Ganna; Wubet, Tesfaye; Schöning, Ingo; Gubry-Rangin, Cécile; Kublik, Susanne; Schloter-Hai, Brigitte; Rattei, Thomas; Welzl, Gerhard; Nicol, Graeme W; Schrumpf, Marion; Buscot, Francois; Prosser, James I; Schloter, Michael

    2015-05-01

    In this study, we investigated the impact of soil pH on the diversity and abundance of archaeal ammonia oxidizers in 27 different forest soils across Germany. DNA was extracted from topsoil samples, the amoA gene, encoding ammonia monooxygenase, was amplified; and the amplicons were sequenced using a 454-based pyrosequencing approach. As expected, the ratio of archaeal (AOA) to bacterial (AOB) ammonia oxidizers' amoA genes increased sharply with decreasing soil pH. The diversity of AOA differed significantly between sites with ultra-acidic soil pH (<3.5) and sites with higher pH values. The major OTUs from soil samples with low pH could be detected at each site with a soil pH <3.5 but not at sites with pH >4.5, regardless of geographic position and vegetation. These OTUs could be related to the Nitrosotalea group 1.1 and the Nitrososphaera subcluster 7.2, respectively, and showed significant similarities to OTUs described from other acidic environments. Conversely, none of the major OTUs typical of sites with a soil pH >4.6 could be found in the ultra- and extreme acidic soils. Based on a comparison with the amoA gene sequence data from a previous study performed on agricultural soils, we could clearly show that the development of AOA communities in soils with ultra-acidic pH (<3.5) is mainly triggered by soil pH and is not influenced significantly by the type of land use, the soil type, or the geographic position of the site, which was observed for sites with acido-neutral soil pH.

  8. Links between Ammonia Oxidizer Community Structure, Abundance, and Nitrification Potential in Acidic Soils ▿ †

    PubMed Central

    Yao, Huaiying; Gao, Yangmei; Nicol, Graeme W.; Campbell, Colin D.; Prosser, James I.; Zhang, Limei; Han, Wenyan; Singh, Brajesh K.

    2011-01-01

    Ammonia oxidation is the first and rate-limiting step of nitrification and is performed by both ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the environmental drivers controlling the abundance, composition, and activity of AOA and AOB communities are not well characterized, and the relative importance of these two groups in soil nitrification is still debated. Chinese tea orchard soils provide an excellent system for investigating the long-term effects of low pH and nitrogen fertilization strategies. AOA and AOB abundance and community composition were therefore investigated in tea soils and adjacent pine forest soils, using quantitative PCR (qPCR), terminal restriction fragment length polymorphism (T-RFLP) and sequence analysis of respective ammonia monooxygenase (amoA) genes. There was strong evidence that soil pH was an important factor controlling AOB but not AOA abundance, and the ratio of AOA to AOB amoA gene abundance increased with decreasing soil pH in the tea orchard soils. In contrast, T-RFLP analysis suggested that soil pH was a key explanatory variable for both AOA and AOB community structure, but a significant relationship between community abundance and nitrification potential was observed only for AOA. High potential nitrification rates indicated that nitrification was mainly driven by AOA in these acidic soils. Dominant AOA amoA sequences in the highly acidic tea soils were all placed within a specific clade, and one AOA genotype appears to be well adapted to growth in highly acidic soils. Specific AOA and AOB populations dominated in soils at particular pH values and N content, suggesting adaptation to specific niches. PMID:21571885

  9. Land Spreading of Wastewaters from the Fruit-Packaging Industry and Potential Effects on Soil Microbes: Effects of the Antioxidant Ethoxyquin and Its Metabolites on Ammonia Oxidizers.

    PubMed

    Papadopoulou, Evangelia S; Tsachidou, Bella; Sułowicz, Sławomir; Menkissoglu-Spiroudi, Urania; Karpouzas, Dimitrios G

    2016-01-15

    Thiabendazole (TBZ), imazalil (IMZ), ortho-phenylphenol (OPP), diphenylamine (DPA), and ethoxyquin (EQ) are used in fruit-packaging plants (FPP) with the stipulation that wastewaters produced by their application would be depurated on site. However, no such treatment systems are currently in place, leading FPP to dispose of their effluents in agricultural land. We investigated the dissipation of those pesticides and their impact on soil microbes known to have a key role on ecosystem functioning. OPP and DPA showed limited persistence (50% dissipation time [DT50], 0.6 and 1.3 days) compared to TBZ and IMZ (DT50, 47.0 and 150.8 days). EQ was rapidly transformed to the short-lived quinone imine (QI) (major metabolite) and the more persistent 2,4-dimethyl-6-ethoxyquinoline (EQNL) (minor metabolite). EQ and OPP exerted significant inhibition of potential nitrification, with the effect of the former being more persistent. This was not reflected in the abundance (determined by quantitative PCR [qPCR]) of the amoA gene of ammonia-oxidizing bacteria (AOB) and archaea (AOA). Considering the above discrepancy and the metabolic pattern of EQ, we further investigated the hypothesis that its metabolites and not only EQ were toxic to ammonia oxidizers. Potential nitrification, amoA gene abundance, and amoA gene transcripts of AOB and AOA showed that QI was probably responsible for the inhibition of nitrification. Our findings have serious ecological and practical implications for soil productivity and N conservation in agriculturally impacted ecosystems and stress the need to include metabolites and RNA-based methods when the soil microbial toxicity of pesticides is assessed. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

  10. Land Spreading of Wastewaters from the Fruit-Packaging Industry and Potential Effects on Soil Microbes: Effects of the Antioxidant Ethoxyquin and Its Metabolites on Ammonia Oxidizers

    PubMed Central

    Papadopoulou, Evangelia S.; Tsachidou, Bella; Sułowicz, Sławomir; Menkissoglu-Spiroudi, Urania

    2015-01-01

    Thiabendazole (TBZ), imazalil (IMZ), ortho-phenylphenol (OPP), diphenylamine (DPA), and ethoxyquin (EQ) are used in fruit-packaging plants (FPP) with the stipulation that wastewaters produced by their application would be depurated on site. However, no such treatment systems are currently in place, leading FPP to dispose of their effluents in agricultural land. We investigated the dissipation of those pesticides and their impact on soil microbes known to have a key role on ecosystem functioning. OPP and DPA showed limited persistence (50% dissipation time [DT50], 0.6 and 1.3 days) compared to TBZ and IMZ (DT50, 47.0 and 150.8 days). EQ was rapidly transformed to the short-lived quinone imine (QI) (major metabolite) and the more persistent 2,4-dimethyl-6-ethoxyquinoline (EQNL) (minor metabolite). EQ and OPP exerted significant inhibition of potential nitrification, with the effect of the former being more persistent. This was not reflected in the abundance (determined by quantitative PCR [qPCR]) of the amoA gene of ammonia-oxidizing bacteria (AOB) and archaea (AOA). Considering the above discrepancy and the metabolic pattern of EQ, we further investigated the hypothesis that its metabolites and not only EQ were toxic to ammonia oxidizers. Potential nitrification, amoA gene abundance, and amoA gene transcripts of AOB and AOA showed that QI was probably responsible for the inhibition of nitrification. Our findings have serious ecological and practical implications for soil productivity and N conservation in agriculturally impacted ecosystems and stress the need to include metabolites and RNA-based methods when the soil microbial toxicity of pesticides is assessed. PMID:26590271

  11. Whose Is the Fallacy? A Rejoinder to Daniel Kahneman and Amos Tversky.

    ERIC Educational Resources Information Center

    Cohen, L. Jonathan

    1980-01-01

    Kahneman and Tversky's critique of Cohen's position on adults' probability reasoning is not valid. If they think Baconian logic is normatively unsound, the onus is on them to explain why. It is valid and useful because nature itself is full of causal processes. (Author/RD)

  12. Chemistry of aminoacylation of 5'-AMO and the origin of protein synthesis

    NASA Technical Reports Server (NTRS)

    Lacey, J. C., Jr.

    1991-01-01

    Much of our recent work has been a study of aminoacyl AMP derivatives. Elucidation of the character of aminoacyl AMP derivatives has made it obvious that AMP has characteristics which should allow it to preferentially catalyze the synthesis of L-amino acid peptides. The essential features which lead to this conclusion are that all l-amino acids (but not all D amino acids) when esterified to 5'-AMP preferentially (65 percent) distribute to the 3' position of the 5'-AMP; that esterification is predominantly at the 2' position; that 2', 3' diaminoacyl esters are readily formed; and that a peptide bond can be formed between adjacent 2',3' aminoacyl esters.

  13. Education System of John Amos Comenius and Its Implications in Modern Didactics

    ERIC Educational Resources Information Center

    Lukaš, Mirko; Munjiza, Emerik

    2014-01-01

    The authors were particularly interested in scientific conceptions shaped and systematized in subject-teaching school system proposed by J.A. Comenius, which are still actively applied in day-to-day school practice. Within the analysed ideas of J.A. Comenius the goal and the task of this paper is to present to the pedagogic public the originality…

  14. Nitrifier Gene Abundance and Diversity in Sediments Impacted by Acid Mine Drainage

    PubMed Central

    Ramanathan, Bhargavi; Boddicker, Andrew M.; Roane, Timberley M.; Mosier, Annika C.

    2017-01-01

    Extremely acidic and metal-rich acid mine drainage (AMD) waters can have severe toxicological effects on aquatic ecosystems. AMD has been shown to completely halt nitrification, which plays an important role in transferring nitrogen to higher organisms and in mitigating nitrogen pollution. We evaluated the gene abundance and diversity of nitrifying microbes in AMD-impacted sediments: ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), and nitrite-oxidizing bacteria (NOB). Samples were collected from the Iron Springs Mining District (Ophir, CO, United States) during early and late summer in 2013 and 2014. Many of the sites were characterized by low pH (<5) and high metal concentrations. Sequence analyses revealed AOA genes related to Nitrososphaera, Nitrosotalea, and Nitrosoarchaeum; AOB genes related to Nitrosomonas and Nitrosospira; and NOB genes related to Nitrospira. The overall abundance of AOA, AOB and NOB was examined using quantitative PCR (qPCR) amplification of the amoA and nxrB functional genes and 16S rRNA genes. Gene copy numbers ranged from 3.2 × 104 – 4.9 × 107 archaeal amoA copies ∗ μg DNA-1, 1.5 × 103 – 5.3 × 105 AOB 16S rRNA copies ∗ μg DNA-1, and 1.3 × 106 – 7.7 × 107 Nitrospira nxrB copies ∗ μg DNA-1. Overall, Nitrospira nxrB genes were found to be more abundant than AOB 16S rRNA and archaeal amoA genes in most of the sample sites across 2013 and 2014. AOB 16S rRNA and Nitrospira nxrB genes were quantified in sediments with pH as low as 3.2, and AOA amoA genes were quantified in sediments as low as 3.5. Though pH varied across all sites (pH 3.2–8.3), pH was not strongly correlated to the overall community structure or relative abundance of individual OTUs for any gene (based on CCA and Spearman correlations). pH was positivity correlated to the total abundance (qPCR) of AOB 16S rRNA genes, but not for any other genes. Metals were not correlated to the overall nitrifier community composition or abundance, but

  15. Multidecadal Atlantic climate variability and its impact on marine pelagic communities

    NASA Astrophysics Data System (ADS)

    Harris, Victoria; Edwards, Martin; Olhede, Sofia C.

    2014-05-01

    A large scale analysis of sea surface temperature (SST) and climate variability over the North Atlantic and its interactions with plankton over the North East Atlantic was carried out to better understand what drives both temperature and species abundance. The spatio-temporal pattern of SST was found to correspond to known climate indices, namely the Atlantic Multidecadal Oscillation (AMO), the East Atlantic Pattern (EAP) and the North Atlantic Oscillation (NAO). The spatial influence of these indices is heterogeneous. Although the AMO is present across all regions, it is most strongly represented in the SST signal in the subpolar gyre region. The NAO instead is strongly weighted in the North Sea and the pattern of its influence is oscillatory in space with a wavelength of approximately 6000 km. Natural oscillations might obscure the influence of climate change effects, making it difficult to determine how much of the variation is attributable to longer term trends. In order to separate the influences of different climate signals the SST signals were decomposed in to spatial and temporal components using principal component analysis (PCA). A similar analysis is carried out on various indicator species of plankton: Calanus finmarchicus, Phytoplankton Colour Index and total copepod abundance, as well as phytoplankton and zooplankton communities. By comparing the two outputs it is apparent that the dominant driver is the recent warming trend, which has a negative influence on C. finmarchicus and total copepods, but has a positive one on phytoplankton colour. However natural oscillations also influence the abundance of plankton, in particular the AMO is a driver of diatom abundance. Fourier principal component analysis, an approach which is novel in terms of the ecological data, was used to analyse the behaviour of various communities averaged over space. The zooplankton community is found to be primarily influenced by climate warming trends. The analysis provides

  16. How Do Self-Efficacy, Contextual Variables and Stressors Affect Teacher Burnout in an EFL Context?

    ERIC Educational Resources Information Center

    Khani, Reza; Mirzaee, Alireza

    2015-01-01

    This study was an attempt to investigate the relationships among stressors, contextual variables, self-efficacy and teacher burnout in Iran as an EFL (English as a Foreign Language) context. A battery of questionnaires was administered to 216 English language teachers of private language institutes. Using Amos version 20, structural equation…

  17. Dominican and Puerto Rican Mother-Adolescent Communication: Maternal Self-Disclosure and Youth Risk Intentions

    ERIC Educational Resources Information Center

    Guilamo-Ramos, Vincent

    2010-01-01

    A communication framework was developed to examine the influence of maternal use of self-disclosure on adolescent intentions to smoke cigarettes and to engage in sexual intercourse. Data were collected from 516 Dominican and Puerto Rican mother-adolescent dyads. Statistical analyses were conducted in AMOS using structural equation modeling.…

  18. A Perspective on Judgment and Choice: Mapping Bounded Rationality

    ERIC Educational Resources Information Center

    Kahneman, Daniel

    2003-01-01

    Early studies of intuitive judgment and decision making conducted with the late Amos Tversky are reviewed in the context of two related concepts: an analysis of accessibility, the ease with which thoughts come to mind; a distinction between effortless intuition and deliberate reasoning. Intuitive thoughts, like percepts, are highly accessible.…

  19. Experiences of Collaborative Research

    ERIC Educational Resources Information Center

    Kahneman, Daniel

    2003-01-01

    The author's personal history of the research that led to his recognition in economics is described, focusing on the process of collaboration and on the experience of controversy. The author's collaboration with Amos Tversky dealt with 3 major topics: judgment under uncertainty, decision making, and framing effects. A subsequent collaboration,…

  20. P.L. 110-140, "Energy Independence and Security Act of 2007", 2007

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    None

    2007-12-19

    The Energy Independence and Security Act of 2007 (EISA), signed into law on December 19, 2007, set forth an agenda for improving U.S. energy security across the entire economy. While industrial energy efficiency is specifically called out in Title IV, Subtitle D, other EISA provisions also apply to AMO activities.

  1. Ballistic Performance of Titanium Alloys: Ti-6Al-4V Versus Russian Titanium

    DTIC Science & Technology

    2004-02-01

    Ground, MD, July 2000. 4. Crist, E. Chemistry Tests for CST 3553+0.6Zr. E-mail correspondence, December 2, 2003. 5. Amos, C.W. Lightweight Armor Design...JANOWSKI W PALLANTE S ROBERTSON O YU 1000 WARREN AVE NILES OH 44446 15 TIMET ATTN J FANNING PO BOX 2128 HENDERSON NV

  2. The Relationships among the Fine Arts, School Culture, and High School Graduation Rates in Georgia

    ERIC Educational Resources Information Center

    Lovett, Andrew, Jr.

    2014-01-01

    High school graduation is the single largest hurdle that students must achieve to prepare for college and career (National Governor's Association, 2011). Fleischman & Heppen (2009) agree that American high schools must address the problem of declining graduation rate. Approximately 1.28 million students drop out of high school annually (Amos,…

  3. Career and Employer Change in the Age of the "Boundaryless" Career

    ERIC Educational Resources Information Center

    Hess, Narelle; Jepsen, Denise M.; Dries, Nicky

    2012-01-01

    This study examined the direct effect of individual career concerns on career and employer change intention, as well as the buffering influence of organisational commitment on this relationship, based on the AMO model of behavioural change intention. Survey data, collected from 341 employees across industry sectors in Australia, showed that…

  4. Building Collegiate E-Loyalty: The Role of Perceived Value in the Quality-Loyalty Linkage in Online Higher Education

    ERIC Educational Resources Information Center

    Kilburn, Brandon; Kilburn, Ashley; Davis, Dexter

    2016-01-01

    E-service quality of online higher education reflects the student's perception of quality of online exchanges across four dimensions: fulfillment, efficiency, system availability and privacy. This study links e-service quality to intentions to remain loyal as mediated by perceived value in an online higher education environment. AMOS is used to…

  5. The Relationship between Adolescents' Levels of Hopelessness and Cyberbullying: The Role of Values

    ERIC Educational Resources Information Center

    Dilmaç, Bülent

    2017-01-01

    The purpose of this research is to present the relationship of teenagers' values with their levels of cyberbullying and hopelessness, as well as to test the created model in terms of these relations. This research analyzes the predictive relationships among adolescents' values, cyberbullying, and hopelessness through the program AMOS 19 in…

  6. Great Mentors: Robert Jervis, Bruce Bueno de Mesquita, and Peter Katzenstein

    ERIC Educational Resources Information Center

    McDermott, Rose

    2010-01-01

    I have been extremely blessed in my life to have benefitted from some amazing mentors and friends in both psychology (most notably, Amos Tversky, Phil Zimbardo, and Leda Cosmides) and political science. Inspired by the occasion of Robert Jervis' festschrift, which importantly does not signal his imminent retirement, I was prompted to take…

  7. Novel adipokinetic hormones in the kissing bugs Rhodnius prolixus, Triatoma infestans, Dipetalogaster maxima and Panstrongylus megistus.

    PubMed

    Marco, Heather G; Simek, Petr; Clark, Kevin D; Gäde, Gerd

    2013-03-01

    Peptides of the adipokinetic hormone (AKH)/red pigment-concentrating hormone (RPCH) family were isolated and sequenced from the retrocerebral corpora cardiaca of four kissing bugs which are all vectors of the protozoan Trypanosoma cruzi responsible for Chagas' disease. The sequence of three novel AKHs were deduced from the multiple MS(N) electrospray mass data: the octapeptide pGlu-Leu-Thr-Phe-Ser-Thr-Asp-Trp amide (denoted Rhopr-AKH) in Rhodnius prolixus and Panstrongylus megistus, the nonapeptide pGlu-Leu-Thr-Phe-Thr-Pro-Asn-Trp-Gly amide (denoted Triin-AKH) in Triatoma infestans and the decapeptide pGlu-Leu-Thr-Phe-Ser-Asp-Gly-Trp-Gly-Asn amide (denoted Dipma-AKH) in Dipetalogaster maxima. The sequences were confirmed by identical behavior of natural and synthetic forms in reversed-phase HPLC and by CID-MS mass spectra. Conspecific injections of a dose of 10 pmol of the respective synthetic peptides resulted in a small but significant increase of the lipid concentration in the hemolymph. These experiments suggest that AKHs in kissing bugs act to regulate lipid metabolism, possibly during dispersal flights which is one of the mechanisms whereby the insects reach new outbreak areas. Copyright © 2012 Elsevier Inc. All rights reserved.

  8. EDITORIAL: Greetings from the new Editor-in-Chief Greetings from the new Editor-in-Chief

    NASA Astrophysics Data System (ADS)

    Corkum, Paul

    2011-01-01

    As a journal that reports advances in atomic, molecular and optical science (AMO), Journal of Physics B: Atomic, Molecular and Optical Physics (J. Phys. B) provides the AMO research community with three unique fora: topical reviews, tutorials and special issues. Developed under the leadership of editor Jan Michael Rost and his Editorial Board, these sections have cemented J. Phys. B's reputation as a major journal showcasing the AMO community's advances. For me, an AMO scientist, it is therefore a special pleasure to be entrusted with continuing the tradition of excellence established by Jan Michael and the Editorial Board. I intend to build on this foundation by ensuring that the journal makes full use of these tools. Topical reviews: a unique focus When J. Phys. B becomes the first journal you turn to for initial reviews about important emerging areas in your field, we as an Editorial Board will have succeeded. To us, a topical review is different from a traditional review—a topical review focuses on emerging sub-fields of AMO physics. Its function is to alert and educate our readers about emerging opportunities. Topical reviews can also serve a closely related function for readers: keeping us up-to-date with critical technologies that lie slightly outside our own fields, such as advances in free-electron lasers science, (which will surely affect our field). Our overall goal is to make your research more productive because of the topical reviews you read within the journal. Tutorials J. Phys. B tutorials are aimed at graduate students or researchers venturing into a new field. Just as in my own research group I encourage all graduate students to write their theses in a way that will be useful to both future graduate students and the larger community beyond my group, J. Phys. B has designed tutorials to fill this function on the journal scale. Thus, tutorial authors are able to write in greater depth than can be included in a paper in nature, science or in the

  9. The association of contact lens solution use and Acanthamoeba keratitis

    PubMed Central

    Joslin, Charlotte E.; Tu, Elmer Y.; Shoff, Megan E.; Booton, Gregory C.; Fuerst, Paul A.; McMahon, Timothy T.; Anderson, Robert J.; Dworkin, Mark S.; Sugar, Joel; Davis, Faith G.; Stayner, Leslie T.

    2009-01-01

    Purpose Diagnosis of Acanthamoeba keratitis, a rare but serious corneal infection, has recently increased significantly at the University of Illinois at Chicago (UIC) Cornea Service. The purpose is to investigate Acanthamoeba keratitis risk factors. Design Retrospective case-control study. Methods Setting University, tertiary care hospital. Patients Fifty-five Acanthamoeba keratitis cases with contact lens use were diagnosed between May 1, 2003 and September 15, 2006. Clinic-matched controls with contact lens use were recruited. Subjects completed surveys targeting lens hygiene, contact lens solution use, and water exposure. Main Outcome Measure Acanthamoeba keratitis. Results Thirty-nine (73.6%) cases and 113 (65.3%) controls participated; 38 cases had complete contact lens data. Thirty-five of 38 cases (92.1%) and 47 of 100 controls (47.0%) used soft lenses. Analysis was performed on 30 cases and 39 controls with matched pairs with soft lens use. Exclusive use of AMO Complete MoisturePlus Multi-Purpose Solution was independently associated with Acanthamoeba keratitis in multivariable analysis (55.2% vs. 10.5%; OR, 16.67; 95% CI, 2.11–162.63; p = 0.008). However, 38.8% of cases reported no use of AMO Complete MoisturePlus Multi-Purpose Solution or used it in combination with other solutions. Although not statistically significant, additional hygiene-related variables (solution ‘reuse’, lack of ‘rubbing’, and showering with lenses) suggest a pattern of risk,. Conclusions AMO Complete MoisturePlus Multi-Purpose Solution use is independently associated with Acanthamoeba keratitis among soft contact lens users. However, it does not explain all cases, suggesting additional factors. Further research into environmental risk factors and hygiene practices is warranted, especially considering this is the second outbreak of an atypical, contact lens-related infection. PMID:17588524

  10. Evaluation of droplet digital PCR for characterizing plasmid reference material used for quantifying ammonia oxidizers and denitrifiers.

    PubMed

    Dong, Lianhua; Meng, Ying; Wang, Jing; Liu, Yingying

    2014-02-01

    DNA reference materials of certified value have a critical function in many analytical processes of DNA measurement. Quantification of amoA genes in ammonia oxidizing bacteria (AOB) and archaea (AOA), and of nirS and nosZ genes in the denitrifiers is very important for determining their distribution and abundance in the natural environment. A plasmid reference material containing nirS, nosZ, amoA-AOB, and amoA-AOA is developed to provide a DNA standard with copy number concentration for ensuring comparability and reliability of quantification of these genes. Droplet digital PCR (ddPCR) was evaluated for characterization of the plasmid reference material. The result revealed that restriction endonuclease digestion of plasmids can improve amplification efficiency and minimize the measurement bias of ddPCR. Compared with the conformation of the plasmid, the size of the DNA fragment containing the target sequence and the location of the restriction site relative to the target sequence are not significant factors affecting plasmid quantification by ddPCR. Liquid chromatography-isotope dilution mass spectrometry (LC-IDMS) was used to provide independent data for quantifying the plasmid reference material. The copy number concentration of the digested plasmid determined by ddPCR agreed well with that determined by LC-IDMS, improving both the accuracy and reliability of the plasmid reference material. The reference value, with its expanded uncertainty (k = 2), of the plasmid reference material was determined to be (5.19 ± 0.41) × 10(9) copies μL(-1) by averaging the results of two independent measurements. Consideration of the factors revealed in this study can improve the reliability and accuracy of ddPCR; thus, this method has the potential to accurately quantify DNA reference materials.

  11. Environmental Shaping of Sponge Associated Archaeal Communities

    PubMed Central

    Turque, Aline S.; Batista, Daniela; Silveira, Cynthia B.; Cardoso, Alexander M.; Vieira, Ricardo P.; Moraes, Fernando C.; Clementino, Maysa M.; Albano, Rodolpho M.; Paranhos, Rodolfo; Martins, Orlando B.; Muricy, Guilherme

    2010-01-01

    Background Archaea are ubiquitous symbionts of marine sponges but their ecological roles and the influence of environmental factors on these associations are still poorly understood. Methodology/Principal Findings We compared the diversity and composition of archaea associated with seawater and with the sponges Hymeniacidon heliophila, Paraleucilla magna and Petromica citrina in two distinct environments: Guanabara Bay, a highly impacted estuary in Rio de Janeiro, Brazil, and the nearby Cagarras Archipelago. For this we used metagenomic analyses of 16S rRNA and ammonia monooxygenase (amoA) gene libraries. Hymeniacidon heliophila was more abundant inside the bay, while P. magna was more abundant outside and P. citrina was only recorded at the Cagarras Archipelago. Principal Component Analysis plots (PCA) generated using pairwise unweighted UniFrac distances showed that the archaeal community structure of inner bay seawater and sponges was different from that of coastal Cagarras Archipelago. Rarefaction analyses showed that inner bay archaeaoplankton were more diverse than those from the Cagarras Archipelago. Only members of Crenarchaeota were found in sponge libraries, while in seawater both Crenarchaeota and Euryarchaeota were observed. Although most amoA archaeal genes detected in this study seem to be novel, some clones were affiliated to known ammonia oxidizers such as Nitrosopumilus maritimus and Cenarchaeum symbiosum. Conclusion/Significance The composition and diversity of archaeal communities associated with pollution-tolerant sponge species can change in a range of few kilometers, probably influenced by eutrophication. The presence of archaeal amoA genes in Porifera suggests that Archaea are involved in the nitrogen cycle within the sponge holobiont, possibly increasing its resistance to anthropogenic impacts. The higher diversity of Crenarchaeota in the polluted area suggests that some marine sponges are able to change the composition of their associated

  12. Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system

    PubMed Central

    Yan, Jia; Haaijer, Suzanne C M; Op den Camp, Huub J M; Niftrik, Laura; Stahl, David A; Könneke, Martin; Rush, Darci; Sinninghe Damsté, Jaap S; Hu, Yong Y; Jetten, Mike S M

    2012-01-01

    In marine oxygen minimum zones (OMZs), ammonia-oxidizing archaea (AOA) rather than marine ammonia-oxidizing bacteria (AOB) may provide nitrite to anaerobic ammonium-oxidizing (anammox) bacteria. Here we demonstrate the cooperation between marine anammox bacteria and nitrifiers in a laboratory-scale model system under oxygen limitation. A bioreactor containing ‘Candidatus Scalindua profunda’ marine anammox bacteria was supplemented with AOA (Nitrosopumilus maritimus strain SCM1) cells and limited amounts of oxygen. In this way a stable mixed culture of AOA, and anammox bacteria was established within 200 days while also a substantial amount of endogenous AOB were enriched. ‘Ca. Scalindua profunda’ and putative AOB and AOA morphologies were visualized by transmission electron microscopy and a C18 anammox [3]-ladderane fatty acid was highly abundant in the oxygen-limited culture. The rapid oxygen consumption by AOA and AOB ensured that anammox activity was not affected. High expression of AOA, AOB and anammox genes encoding for ammonium transport proteins was observed, likely caused by the increased competition for ammonium. The competition between AOA and AOB was found to be strongly related to the residual ammonium concentration based on amoA gene copy numbers. The abundance of archaeal amoA copy numbers increased markedly when the ammonium concentration was below 30 μM finally resulting in almost equal abundance of AOA and AOB amoA copy numbers. Massive parallel sequencing of mRNA and activity analyses further corroborated equal abundance of AOA and AOB. PTIO addition, inhibiting AOA activity, was employed to determine the relative contribution of AOB versus AOA to ammonium oxidation. The present study provides the first direct evidence for cooperation of archaeal ammonia oxidation with anammox bacteria by provision of nitrite and consumption of oxygen. PMID:23057688

  13. Community Composition and Transcriptional Activity of Ammonia-Oxidizing Prokaryotes of Seagrass Thalassia hemprichii in Coral Reef Ecosystems.

    PubMed

    Ling, Juan; Lin, Xiancheng; Zhang, Yanying; Zhou, Weiguo; Yang, Qingsong; Lin, Liyun; Zeng, Siquan; Zhang, Ying; Wang, Cong; Ahmad, Manzoor; Long, Lijuan; Dong, Junde

    2018-01-01

    Seagrasses in coral reef ecosystems play important ecological roles by enhancing coral reef resilience under ocean acidification. However, seagrass primary productivity is typically constrained by limited nitrogen availability. Ammonia oxidation is an important process conducted by ammonia-oxidizing archaea (AOA) and bacteria (AOB), yet little information is available concerning the community structure and potential activity of seagrass AOA and AOB. Therefore, this study investigated the variations in the abundance, diversity and transcriptional activity of AOA and AOB at the DNA and transcript level from four sample types: the leaf, root, rhizosphere sediment and bulk sediment of seagrass Thalassia hemprichii in three coral reef ecosystems. DNA and complementary DNA (cDNA) were used to prepare clone libraries and DNA and cDNA quantitative PCR ( q PCR) assays, targeting the ammonia monooxygenase-subunit ( amo A) genes as biomarkers. Our results indicated that the closest relatives of the obtained archaeal and bacterial amo A gene sequences recovered from DNA and cDNA libraries mainly originated from the marine environment. Moreover, all the obtained AOB sequences belong to the Nitrosomonadales cluster. Nearly all the AOA communities exhibited higher diversity than the AOB communities at the DNA level, but the q PCR data demonstrated that the abundances of AOB communities were higher than that of AOA communities based on both DNA and RNA transcripts. Collectively, most of the samples shared greater community composition similarity with samples from the same location rather than sample type. Furthermore, the abundance of archaeal amo A gene in rhizosphere sediments showed significant relationships with the ammonium concentration of sediments and the nitrogen content of plant tissue (leaf and root) at the DNA level ( P < 0.05). Conversely, no such relationships were found for the AOB communities. This work provides new insight into the nitrogen cycle, particularly

  14. Expression profile analysis of circulating microRNAs and their effects on ion channels in Chinese atrial fibrillation patients.

    PubMed

    Lu, Yingmin; Hou, Shuxin; Huang, Damin; Luo, Xiaohan; Zhang, Jinchun; Chen, Jian; Xu, Weiping

    2015-01-01

    To investigate the changes in expression profile of circulating microRNAs (miRNAs) and the regulatory effect of atrial fibrilation (AF)-related miRNAs on ion channels. 112 patients with AF were assigned into observation group, and another 112 non-AF people were assigned into control group. Total plasma RNAs were extracted from patients' blood samples. Differentially expressed miRNA-1s were transfected into primary-cultured neonatal rat cardiac myocytes. Compared with control group, significant differences were observed in 15 kinds of miRNAs in observation group. Down-regulation of the expression of miRNAs included hsa-miR-328, hsa-miR-145, hsa-miR-222, hsa-miR-1, hsa-miR-162, hsa-miR-432, and hsa-miR-493b; Up-regulation of the expression included hsa-miR634, hsa-miR-664, hsa-miR-9, hsa-miR-152, hsa-miR-19, hsa-miR-454, hsa-miR-146, and hsa-miR-374a. The expression level of CACNB2 protein in miRNA-1 group was significantly lower than that in blank control group, negative control group, MTmiRNA-1 group, AMO-1 group and miRNA-1+AMO-1 cotransfection group (P < 0.05), while in AMO-1 group, the expression level of CACNB2 protein was significantly higher than that in other groups (P < 0.05). These results indicated that transfected miRNA-1 could significantly inhibit the expression of CACNB2 protein. Circulating miRNAs can be used in studies concerning on the regulation mechanism of the occurrence and development of AF. MiRNA-1 can decrease the intracellular Ca(2+) concentration and prevent the AF.

  15. Expression profile analysis of circulating microRNAs and their effects on ion channels in Chinese atrial fibrillation patients

    PubMed Central

    Lu, Yingmin; Hou, Shuxin; Huang, Damin; Luo, Xiaohan; Zhang, Jinchun; Chen, Jian; Xu, Weiping

    2015-01-01

    Objective: To investigate the changes in expression profile of circulating microRNAs (miRNAs) and the regulatory effect of atrial fibrilation (AF)-related miRNAs on ion channels. Methods: 112 patients with AF were assigned into observation group, and another 112 non-AF people were assigned into control group. Total plasma RNAs were extracted from patients’ blood samples. Differentially expressed miRNA-1s were transfected into primary-cultured neonatal rat cardiac myocytes. Results: Compared with control group, significant differences were observed in 15 kinds of miRNAs in observation group. Down-regulation of the expression of miRNAs included hsa-miR-328, hsa-miR-145, hsa-miR-222, hsa-miR-1, hsa-miR-162, hsa-miR-432, and hsa-miR-493b; Up-regulation of the expression included hsa-miR634, hsa-miR-664, hsa-miR-9, hsa-miR-152, hsa-miR-19, hsa-miR-454, hsa-miR-146, and hsa-miR-374a. The expression level of CACNB2 protein in miRNA-1 group was significantly lower than that in blank control group, negative control group, MTmiRNA-1 group, AMO-1 group and miRNA-1+AMO-1 cotransfection group (P < 0.05), while in AMO-1 group, the expression level of CACNB2 protein was significantly higher than that in other groups (P < 0.05). These results indicated that transfected miRNA-1 could significantly inhibit the expression of CACNB2 protein. Conclusions: Circulating miRNAs can be used in studies concerning on the regulation mechanism of the occurrence and development of AF. MiRNA-1 can decrease the intracellular Ca2+ concentration and prevent the AF. PMID:25785065

  16. AFRL Advanced Electric Lasers Branch - Construction and Upgrade of a 50-watt Facility-Class Sodium Guidestar Pump Laser

    NASA Astrophysics Data System (ADS)

    Bronder, T.; Miller, H.; Stohs, J.; Lu, C.; Baker, J.; Lucero, A.

    The development of a reliable and effective laser source for pumping mesospheric sodium to generate an artificial guidestar has been well documented. From the early achievements with 589nm high-power dye lasers at the Keck and Lick observatories to the ground-breaking 50W CW FASOR (Frequency Addition Source of Optical Radiation) Guidestar at the Air Forces Starfire Optical Range (SOR), there has been intense interest in this technology from both the academic and military communities. Beginning in the fall of 2008, the Air Force Research Laboratorys Advanced Electric Lasers Branch began a project to build, test, verify and deliver an upgraded version of the SOR FASOR for use at the AF Maui Optical Station (AMOS) in the summer of 2010. This FASOR will be similar in design to the existing SOR device and produce 50W of diffraction limited, linearly polarized narrow linewidth 589nm light by combining the output of two injection-locked Nd:YAG ring lasers (operating at 1064nm and 1319nm) using resonant sum-frequency generation in a lithium triborate crystal (LBO). The upgraded features will include modularized sub-components, embedded control electronics, and a simplified cooling system. The first portion of this upgrade project is to reconstruct the current SOR FASOR components and include improved methods of regulating the gain modules of the two injection lasers. In parallel with this effort, the technical plans for the modularization and re-packaging of the FASOR will be finalized and coordinated with the staff at Maui. This presentation will summarize the result of these efforts to date and provide updates on the AMOS FASOR status. Additionally, plans for "next-generation" FASOR upgrades for both SOR and AMOS will also be discussed.

  17. Key factors limiting the open circuit voltage of n(+)pp(+) indium phosphide solar cells

    NASA Technical Reports Server (NTRS)

    Goradia, Chandra; Thesling, William; Weinberg, Irving

    1991-01-01

    Solar cells made from gallium arsenide (GaAs), with a room temperature bandgap of E(sub g) = 1.43 eV have exhibited the best measured open circuit voltage (V sub OC) of 1.05 V at 1 AMO, 25 C. The material InP is in many ways similar to GaAs. A simple calculation comparing InP to GaAs then shows that solar cells made from InP, with E(sub g) = 1.35 at 300 K, should exhibit the best measured (V sub OC) of approximately 950 mV at 1 AMO, 300 K. However, to date, the best measured V(sub OC) for InP solar cells made by any fabrication method is 899 mV at AM1.5, 25 C which would translate to 912 mV at 1 AMO, 25 C. The V(sub OC) of an n(+)pp(+) InP solar cell is governed by several factors. Of these, some factors, such as the thickness and doping of the emitter and base regions, are easily controlled and can be adjusted to desired values dictated by a good performance optimizing model. Such factors were not considered. There are other factors which also govern V(sub OC), and their values are not so easily controlled. The primary ones among these are (1) the indirect or Hall-Shockley-Read lifetimes in the various regions of the cell, (2) the low-doping intrinsic carrier concentration n(sub i) of the InP material, (3) the heavy doping factors in the emitter and BSF regions, and (4) the front surface recombination velocity S(sub F). The influence of these latter factors on the V(sub OC) of the n(+)pp(+) InP solar cell and the results were used to produce a near-optimum design of the n(+)pp(+) InP solar cell.

  18. Marine Microbial Gene Abundance and Community Composition in Response to Ocean Acidification and Elevated Temperature in Two Contrasting Coastal Marine Sediments.

    PubMed

    Currie, Ashleigh R; Tait, Karen; Parry, Helen; de Francisco-Mora, Beatriz; Hicks, Natalie; Osborn, A Mark; Widdicombe, Steve; Stahl, Henrik

    2017-01-01

    Marine ecosystems are exposed to a range of human-induced climate stressors, in particular changing carbonate chemistry and elevated sea surface temperatures as a consequence of climate change. More research effort is needed to reduce uncertainties about the effects of global-scale warming and acidification for benthic microbial communities, which drive sedimentary biogeochemical cycles. In this research, mesocosm experiments were set up using muddy and sandy coastal sediments to investigate the independent and interactive effects of elevated carbon dioxide concentrations (750 ppm CO 2 ) and elevated temperature (ambient +4°C) on the abundance of taxonomic and functional microbial genes. Specific quantitative PCR primers were used to target archaeal, bacterial, and cyanobacterial/chloroplast 16S rRNA in both sediment types. Nitrogen cycling genes archaeal and bacterial ammonia monooxygenase ( amoA ) and bacterial nitrite reductase ( nirS ) were specifically targeted to identify changes in microbial gene abundance and potential impacts on nitrogen cycling. In muddy sediment, microbial gene abundance, including amoA and nirS genes, increased under elevated temperature and reduced under elevated CO 2 after 28 days, accompanied by shifts in community composition. In contrast, the combined stressor treatment showed a non-additive effect with lower microbial gene abundance throughout the experiment. The response of microbial communities in the sandy sediment was less pronounced, with the most noticeable response seen in the archaeal gene abundances in response to environmental stressors over time. 16S rRNA genes ( amoA and nirS ) were lower in abundance in the combined stressor treatments in sandy sediments. Our results indicated that marine benthic microorganisms, especially in muddy sediments, are susceptible to changes in ocean carbonate chemistry and seawater temperature, which ultimately may have an impact upon key benthic biogeochemical cycles.

  19. Effect of Toxic Metals on Indigenous Soil β-Subgroup Proteobacterium Ammonia Oxidizer Community Structure and Protection against Toxicity by Inoculated Metal-Resistant Bacteria

    PubMed Central

    Stephen, John R.; Chang, Yun-Juan; Macnaughton, Sarah J.; Kowalchuk, George A.; Leung, Kam T.; Flemming, Cissy A.; White, David C.

    1999-01-01

    Contamination of soils with toxic metals is a major problem on military, industrial, and mining sites worldwide. Of particular interest to the field of bioremediation is the selection of biological markers for the end point of remediation. In this microcosm study, we focus on the effect of addition of a mixture of toxic metals (cadmium, cobalt, cesium, and strontium as chlorides) to soil on the population structure and size of the ammonia oxidizers that are members of the beta subgroup of the Proteobacteria (β-subgroup ammonia oxidizers). In a parallel experiment, the soils were also treated by the addition of five strains of metal-resistant heterotrophic bacteria. Effects on nitrogen cycling were measured by monitoring the NH3 and NH4+ levels in soil samples. The gene encoding the α-subunit of ammonia monooxygenase (amoA) was selected as a functional molecular marker for the β-subgroup ammonia oxidizing bacteria. Community structure comparisons were performed with clone libraries of PCR-amplified fragments of amoA recovered from contaminated and control microcosms for 8 weeks. Analysis was performed by restriction digestion and sequence comparison. The abundance of ammonia oxidizers in these microcosms was also monitored by competitive PCR. All amoA gene fragments recovered grouped with sequences derived from cultured Nitrosospira. These comprised four novel sequence clusters and a single unique clone. Specific changes in the community structure of β-subgroup ammonia oxidizers were associated with the addition of metals. These changes were not seen in the presence of the inoculated metal-resistant bacteria. Neither treatment significantly altered the total number of β-subgroup ammonia-oxidizing cells per gram of soil compared to untreated controls. Following an initial decrease in concentration, ammonia began to accumulate in metal-treated soils toward the end of the experiment. PMID:9872765

  20. Linking Changes in Snow Cover with Nitrogen Cycling and Microbial Abundance and Functional Gene Expression in Agricultural Soils

    NASA Astrophysics Data System (ADS)

    Goyer, C.; Brin, L.; Zebarth, B.; Burton, D.; Wertz, S.; Chantigny, M.

    2016-12-01

    In eastern Canada, climate change-related warming and increased precipitation may alter winter snow cover, with potential consequences for soil conditions, microbes, and N2O fluxes. We conducted a two-year field study with snow removal, passive snow addition, and ambient treatments in a potato-barley crop system. We measured in situ greenhouse gas (N2O and CO2) fluxes and belowground gas accumulation, and quantified abundance and expression of denitrifier (nirS, nirK, nosZ) and nitrifier (ammonium oxidizing archaeal (AOA) and bacterial (AOB) amoA) genes. Soil gas accumulated throughout winter, and surface fluxes were greatest during spring thaw. Greatest mid-winter soil N2O accumulation and spring thaw N2O fluxes were associated with snow removal in winter 1 and ambient snow in winter 2. High N2O accumulation and fluxes may have been due to increased substrate availability with increased frost intensity in removal plots in winter 1, but with greatest water content in ambient plots in winter 2. In each winter, greatest abundances of nirS, nirK gene denitrifiers and/or amoA gene of AOA were observed in the treatments with the greatest N2O accumulation and fluxes. Gene expression did not vary with treatment, but highest expression of amoA gene of AOA and AOB, and nosZ gene was measured near 0ºC, indicating activity during periods of stable snow cover and spring thaw. Results suggest that the magnitude of fluxes during spring thaw were related to soil conditions and microbial communities present during the prior winter, and not solely those during thaw. Furthermore, the effects of changing snow cover on microbes and N2O fluxes were not a straightforward effect of snow depth, but were likely mediated by temperature and moisture.

  1. Soil nitrogen transformation responses to seasonal precipitation changes are regulated by changes in functional microbial abundance in a subtropical forest

    NASA Astrophysics Data System (ADS)

    Chen, Jie; Xiao, Guoliang; Kuzyakov, Yakov; Jenerette, G. Darrel; Ma, Ying; Liu, Wei; Wang, Zhengfeng; Shen, Weijun

    2017-05-01

    The frequency of dry-season droughts and wet-season storms has been predicted to increase in subtropical areas in the coming decades. Since subtropical forest soils are significant sources of N2O and NO3-, it is important to understand the features and determinants of N transformation responses to the predicted precipitation changes. A precipitation manipulation field experiment was conducted in a subtropical forest to reduce dry-season precipitation and increase wet-season precipitation, with annual precipitation unchanged. Net N mineralization, net nitrification, N2O emission, nitrifying (bacterial and archaeal amoA) and denitrifying (nirK, nirS and nosZ) gene abundance, microbial biomass carbon (MBC), extractable organic carbon (EOC), NO3-, NH4+ and soil water content (SWC) were monitored to characterize and explain soil N transformation responses. Dry-season precipitation reduction decreased net nitrification and N mineralization rates by 13-20 %, while wet-season precipitation addition increased both rates by 50 %. More than 20 % of the total variation of net nitrification and N mineralization could be explained by microbial abundance and SWC. Notably, archaeal amoA abundance showed the strongest correlation with net N transformation rates (r ≥ 0.35), suggesting the critical role of archaeal amoA abundance in determining N transformations. Increased net nitrification in the wet season, together with large precipitation events, caused substantial NO3- losses via leaching. However, N2O emission decreased moderately in both dry and wet seasons due to changes in nosZ gene abundance, MBC, net nitrification and SWC (decreased by 10-21 %). We conclude that reducing dry-season precipitation and increasing wet-season precipitation affect soil N transformations through altering functional microbial abundance and MBC, which are further affected by changes in EOC and NH4+ availabilities.

  2. Modeling Latent Growth Curves With Incomplete Data Using Different Types of Structural Equation Modeling and Multilevel Software

    ERIC Educational Resources Information Center

    Ferrer, Emilio; Hamagami, Fumiaki; McArdle, John J.

    2004-01-01

    This article offers different examples of how to fit latent growth curve (LGC) models to longitudinal data using a variety of different software programs (i.e., LISREL, Mx, Mplus, AMOS, SAS). The article shows how the same model can be fitted using both structural equation modeling and multilevel software, with nearly identical results, even in…

  3. Regional relationships between climate and wildfire-burned area in the interior West, USA

    Treesearch

    Brandon M. Collins; Philip N. Omi; Phillip L. Chapman

    2006-01-01

    Recent studies have linked the Atlantic Multtidecadal Oscillation (AMO) and the Pacific Decadal Oscillation (PDO) with drought occurrence in the interior United States. This study evaluates the influence of AM0 and PDO phases on interannual relationships between climate and wildfire-burned area during the 20th century. Palmer's Drought Severity Index (PDSI) is...

  4. The Influence of Social Support on the Prosocial Behavior of College Students: The Mediating Effect Based on Interpersonal Trust

    ERIC Educational Resources Information Center

    Guo, Yuan

    2017-01-01

    A sample of 720 college students from 10 different universities at the Guangzhou Higher Education Mega Center are investigated using the Social Support Scale, the Prosocial Behavior Scale, and the Interpersonal Trust Scale. Data are analyzed using SPSS20.0 and Amos7.0. Results show that the subjective support and support utilization of college…

  5. An Experiment in American Educational Philosophy

    ERIC Educational Resources Information Center

    Zahner, Mary

    2016-01-01

    The nineteenth century educational experiment by Amos Bronson Alcott and Elizabeth Palmer Peabody at the Temple School in Boston from 1834-1836 was generally considered a failure. Nevertheless, a narrow window of the experiment planted the seed for future interest in early childhood education by means of Peabody's (1836) "Record of a School:…

  6. Kahenman and Tversky's Research on Heuristics and Its Application to Junior Athletic Development and the College Recruiting Process

    ERIC Educational Resources Information Center

    Ryan, Brendan M.

    2017-01-01

    This paper will apply the work of Amos Tversky and Daniel Kahneman in Prospect theory to the college recruiting process. Prospect theory challenges one of the fundamental ideas of Economics; humans are rational creatures and make rational decisions. The theory demonstrates that in fact, often humans do not make rational decisions and are instead…

  7. The Influence of Competence, Motivation, and Organisational Culture to High School Teacher Job Satisfaction and Performance

    ERIC Educational Resources Information Center

    Arifin, H. Muhammad

    2015-01-01

    The study aims to find out and analyze the influence of competence, motivation, and organizational competence to high school teacher job satisfaction and performance in Jayapura City, Papua, Indonesia. The study was conducted on 117 respondents of 346 teachers by means of questionnaire. Data is analyzed by SEM analysis method in AMOS program.…

  8. Ammonia-oxidizing bacteria dominate ammonia oxidation in a full-scale wastewater treatment plant revealed by DNA-based stable isotope probing.

    PubMed

    Pan, Kai-Ling; Gao, Jing-Feng; Li, Hong-Yu; Fan, Xiao-Yan; Li, Ding-Chang; Jiang, Hao

    2018-05-01

    A full-scale wastewater treatment plant (WWTP) with three separate treatment processes was selected to investigate the effects of seasonality and treatment process on the community structures of ammonia-oxidizing archaea (AOA) and bacteria (AOB). And then DNA-based stable isotope probing (DNA-SIP) was applied to explore the active ammonia oxidizers. The results of high-throughput sequencing indicated that treatment processes varied AOB communities rather than AOA communities. AOA slightly outnumbered AOB in most of the samples, whose abundance was significantly correlated with temperature. DNA-SIP results showed that the majority of AOB amoA gene was labeled by 13 C-substrate, while just a small amount of AOA amoA gene was labeled. As revealed by high-throughput sequencing of heavy DNA, Nitrosomonadaceae-like AOB, Nitrosomonas sp. NP1, Nitrosomonas oligotropha and Nitrosomonas marina were the active AOB, and Nitrososphaera viennensis dominated the active AOA. The results indicated that AOB, not AOA, dominated active ammonia oxidation in the test WWTP. Copyright © 2018 Elsevier Ltd. All rights reserved.

  9. Stable isotope tracing of anaerobic methane oxidation in the gassy sediments of Eckernfoerde Bay, German Baltic Sea

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Martens, C.S.; Albert, D.B.; Alperin, M.J.

    Methane concentrations in the pore waters of Eckernfoerde Bay in the German Baltic Sea generally reach gas bubble saturation values within the upper meter of the sediment column. The depth at which saturation occurs is controlled by a balance between rates of methane production, consumption (oxidation), and transport. The relative importance of anaerobic methane oxidation (AMO) in controlling dissolved and gas bubble methane distributions in the bay's sediments is indirectly revealed through methane concentration versus depth profiles, depth variations in the stable C and H isotope composition of methane, and the C isotope composition of total dissolved inorganic carbon ({Sigma}CO{submore » 2}). Direct radiotracer measurements indicate that AMO rates of over 15 mM/yr are focused at the base of the sulfate reduction zone. Diagenetic equations that describe the depth destructions of the {delta}{sup 13}C and {delta}D values of methane reproduce isotopic shifts observed throughout the methane oxidation zone and are best fit with kinetic isotope fractionation factors of 1.012 {+-} 0.001 and 1.120 {plus{underscore}minus} 0.020 respectively.« less

  10. Insight into effects of electro-dewatering pretreatment on nitrous oxide emission involved in related functional genes in sewage sludge composting.

    PubMed

    Wang, Ke; Wu, Yiqi; Wang, Zhe; Wang, Wei; Ren, Nanqi

    2018-05-26

    Electro-dewatering (ED) pretreatment could improve sludge dewatering performance and remove heavy metal, but the effect of ED pretreatment on nitrous oxide (N 2 O) emission and related functional genes in sludge composting process is still unknown, which was firstly investigated in this study. The results revealed that ED pretreatment changed the physicochemical characteristics of sludge and impacted N 2 O related functional genes, resulting in the reduction of cumulative N 2 O emission by 77.04% during 60 days composting. The higher pH and NH 4 + -N, but lower moisture, ORP and NO 2 - -N emerged in the composting of ED sludge compared to mechanical dewatering (MD) sludge. Furthermore, ED pretreatment reduced amoA, hao, narG, nirK and nosZ in ED sludge on Day-10 and Day-60 of composting. It was found that nirK reduction was the major factor impacting N 2 O generation in the initial composting of ED sludge, and the decline of amoA restricted N 2 O production in the curing period. Copyright © 2018 Elsevier Ltd. All rights reserved.

  11. Western tropical Pacific multidecadal variability forced by the Atlantic multidecadal oscillation

    PubMed Central

    Sun, Cheng; Kucharski, Fred; Li, Jianping; Jin, Fei-Fei; Kang, In-Sik; Ding, Ruiqiang

    2017-01-01

    Observational analysis suggests that the western tropical Pacific (WTP) sea surface temperature (SST) shows predominant variability over multidecadal time scales, which is unlikely to be explained by the Interdecadal Pacific Oscillation. Here we show that this variability is largely explained by the remote Atlantic multidecadal oscillation (AMO). A suite of Atlantic Pacemaker experiments successfully reproduces the WTP multidecadal variability and the AMO–WTP SST connection. The AMO warm SST anomaly generates an atmospheric teleconnection to the North Pacific, which weakens the Aleutian low and subtropical North Pacific westerlies. The wind changes induce a subtropical North Pacific SST warming through wind–evaporation–SST effect, and in response to this warming, the surface winds converge towards the subtropical North Pacific from the tropics, leading to anomalous cyclonic circulation and low pressure over the WTP region. The warm SST anomaly further develops due to the SST–sea level pressure–cloud–longwave radiation positive feedback. Our findings suggest that the Atlantic Ocean acts as a key pacemaker for the western Pacific decadal climate variability. PMID:28685765

  12. Quantitative analysis of amoxicillin, its major metabolites and ampicillin in eggs by liquid chromatography combined with electrospray ionization tandem mass spectrometry.

    PubMed

    Sun, Lirui; Jia, Longfei; Xie, Xing; Xie, Kaizhou; Wang, Jianfeng; Liu, Jianyu; Cui, Lulu; Zhang, Genxi; Dai, Guojun; Wang, Jinyu

    2016-02-01

    In this present study, we developed a simple, rapid and specific method for the quantitative analysis of the contents of amoxicillin (AMO), AMO metabolites and ampicillin (AMP) in eggs. This method uses a simple liquid-liquid extraction with acetonitrile followed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). The optimized method has been validated according to requirements defined by the European Union and Food and Drug Administration. Extraction recoveries of the target compounds from the egg at 5, 10 and 25 μg/kg were all higher than 80%, with relative standard deviations not exceeding 10.00%. The limits of quantification in eggs were below the maximum residue limits (MRLs). The decision limits (CCα) ranged between 11.1 and 11.5 μg/kg, while detection capabilities (CCβ) from 12.1 to 13.0 μg/kg. These values were very close to the corresponding MRLs. Finally, the new approach was successfully verified for the quantitative determination of these analytes in 40 commercial eggs from local supermarkets. Copyright © 2015 Elsevier Ltd. All rights reserved.

  13. Determining the material type of man-made orbiting objects using low-resolution reflectance spectroscopy

    NASA Astrophysics Data System (ADS)

    Jorgensen, Kira; Africano, John L.; Stansbery, Eugene G.; Kervin, Paul W.; Hamada, Kris M.; Sydney, Paul F.

    2001-12-01

    The purpose of this research is to improve the knowledge of the physical properties of orbital debris, specifically the material type. Combining the use of the fast-tracking United States Air Force Research Laboratory (AFRL) telescopes with a common astronomical technique, spectroscopy, and NASA resources was a natural step toward determining the material type of orbiting objects remotely. Currently operating at the AFRL Maui Optical Site (AMOS) is a 1.6-meter telescope designed to track fast moving objects like those found in lower Earth orbit (LEO). Using the spectral range of 0.4 - 0.9 microns (4000 - 9000 angstroms), researchers can separate materials into classification ranges. Within the above range, aluminum, paints, plastics, and other metals have different absorption features as well as slopes in their respective spectra. The spectrograph used on this telescope yields a three-angstrom resolution; large enough to see smaller features mentioned and thus determine the material type of the object. The results of the NASA AMOS Spectral Study (NASS) are presented herein.

  14. High-efficiency, radiation-resistant GaAs space cells

    NASA Technical Reports Server (NTRS)

    Bertness, K. A.; Ristow, M. Ladle; Grounner, M.; Kuryla, M. S.; Werthen, J. G.

    1991-01-01

    Although many GaAs solar cells are intended for space applicatons, few measurements of cell degradation after radiation are available, particularly for cells with efficiencies exceeding 20 percent (one-sun, AMO). Often the cell performance is optimized for the highest beginning-of-life (BOL) efficiency, despite the unknown effect of such design on end-of-life (EOL) efficiencies. The results of a study of the radiation effects on p-n GaAs cells are presented. The EOL efficiency of GaAs space cell can be increased by adjusting materials growth parameters, resulting in a demonstration of 16 percent EOL efficiency at one-sun, AMO. Reducing base doping levels to below 3 x 10(exp 17)/cu m and decreasing emitter thickness to 0.3 to 0.5 micron for p-n cells led to significant improvements in radiation hardness as measured by EOL/BOL efficiency ratios for irradiation of 10(exp -15)/sq cm electrons at 1 MeV. BOL efficiency was not affected by changes in emitter thickness but did improve with lower base doping.

  15. High-efficiency thin-film GaAs solar cells, phase2

    NASA Technical Reports Server (NTRS)

    Yeh, Y. C. M.

    1981-01-01

    Thin GaAs epi-layers with good crystallographic quality were grown using a (100) Si-substrate on which a thin Ge epi-interlayer was grown by CVD from germane. Both antireflection-coated metal oxide semiconductor (AMOS) and n(+)/p homojunction structures were studied. The AMOS cells were fabricated on undoped-GaAs epi-layers deposited on bulk poly-Ge substrates using organo-metallic CVD film-growth, with the best achieved AM1 conversion efficiency being 9.1%. Both p-type and n(+)-type GaAs growth were optimized using 50 ppm dimethyl zinc and 1% hydrogen sulfide, respectively. A direct GaAs deposition method in fabricating ultra-thin top layer, epitaxial n(+)/p shallow homojunction solar cells on (100) GaAs substrates (without anodic thinning) was developed to produce large area (1 sq/cm) cells, with 19.4% AM1 conversion efficiency achieved. Additionally, an AM1 conversion efficiency of 18.4% (17.5% with 5% grid coverage) was achieved for a single crystal GaAs n(+)/p cell grown by OM-CVD on a Ge wafer.

  16. Variability common to global sea surface temperatures and runoff in the conterminous United States

    USGS Publications Warehouse

    McCabe, Gregory J.; Wolock, David M.

    2014-01-01

    Singular value decomposition (SVD) is used to identify the variability common to global sea surface temperatures (SSTs) and water-balance-modeled water-year (WY) runoff in the conterminous United States (CONUS) for the 1900–2012 period. Two modes were identified from the SVD analysis; the two modes explain 25% of the variability in WY runoff and 33% of the variability in WY SSTs. The first SVD mode reflects the variability of the El Niño–Southern Oscillation (ENSO) in the SST data and the hydroclimatic effects of ENSO on WY runoff in the CONUS. The second SVD mode is related to variability of the Atlantic multidecadal oscillation (AMO). An interesting aspect of these results is that both ENSO and AMO appear to have nearly equivalent effects on runoff variability in the CONUS. However, the relatively small amount of variance explained by the SVD analysis indicates that there is little covariation between runoff and SSTs, suggesting that SSTs may not be a viable predictor of runoff variability for most of the conterminous United States.

  17. A Critical Survey of Aircraft Maintenance Officer Training and Career Development.

    DTIC Science & Technology

    1982-09-01

    RESEARCH DESIGN AND METHODOLOGY ............ ... 52 Introduction ...... ................. ... 52 Data Collection Plan .... ............. ... 52 v CHAPTER...1,981 of whom held an AMO AFSC. The occupational data collected was used to develop job tasks inventories, demographic pro- files, organizational...Specifically, it addresses the data collection plans we used, the statistical tests we designed and applied, and the assumptions and limitations we

  18. Synthesis and Characterization of Silyldichloramines, Their Reactions with F- Ions, Stability of N2CI2 and NCI2(-), and Formation of NCI3 (Postprint)

    DTIC Science & Technology

    2007-01-01

    S. Can. J. Chem. 1987, 65, 88. (23) Werner, H. J.; Knowles, P. J.; Amos, R. D.; Bernhardsson, A.; Berning, A.; Celani, P.; Cooper, D. L.; Deegan , M. J...Phys. Chem. 1988, 92, 3033. (25) Knowles, P. J.; Hampel, C.; Werner, H. J. J. Chem. Phys. 1994, 99, 5219. (26) Deegan , M. J. O.; Knowles, P. J. Chem

  19. Installation Restoration Program. Volume 1. 110th Fighter Group Michigan Air National Guard, W.K. Kellogg Memorial Airport, Battle Creek, Michigan

    DTIC Science & Technology

    1993-11-01

    GUARD BASE BATTLE CREEK, MICHIGANI REGIONAL LOCATION MAP ýIG A NI 󈨋 -1 10t TAI MICHIAN I i~amoNL GUAR 1- 94Frie Lake ma 61 , 1cI Lose onI diI 0I...textile fabrics. Xylenes are also used in the manufacture of quartz crystal oscillators, hydrogen peroxide, perfumes , insect repellants, epoxy resins

  20. Emergence of Competitive Dominant Ammonia-Oxidizing Bacterial Populations in a Full-Scale Industrial Wastewater Treatment Plant

    PubMed Central

    Layton, Alice C.; Dionisi, Hebe; Kuo, H.-W.; Robinson, Kevin G.; Garrett, Victoria M.; Meyers, Arthur; Sayler, Gary S.

    2005-01-01

    Ammonia-oxidizing bacterial populations in an industrial wastewater treatment plant were investigated with amoA and 16S rRNA gene real-time PCR assays. Nitrosomonas nitrosa initially dominated, but over time RI-27-type ammonia oxidizers, also within the Nitrosomonas communis lineage, increased from below detection to codominance. This shift occurred even though nitrification remained constant. PMID:15691975

  1. Studies of silicon p-n junction solar cells. [open circuit photovoltage

    NASA Technical Reports Server (NTRS)

    Lindholm, F. A.

    1976-01-01

    Single crystal silicon p-n junction solar cells made with low resistivity substrates show poorer solar energy conversion efficiency than traditional theory predicts. The physical mechanisms responsible for this discrepancy are identified and characterized. The open circuit voltage in shallow junction cells of about 0.1 ohm/cm substrate resistivity is investigated under AMO (one sun) conditions.

  2. Photovoltaic conversion of laser energy

    NASA Technical Reports Server (NTRS)

    Stirn, R. J.

    1976-01-01

    The Schottky barrier photovoltaic converter is suggested as an alternative to the p/n junction photovoltaic devices for the conversion of laser energy to electrical energy. The structure, current, output, and voltage output of the Schottky device are summarized. The more advanced concepts of the multilayer Schottky barrier cell and the AMOS solar cell are briefly considered.

  3. Slow Thinking and Deep Learning: Tversky and Kahneman's Taxi Cabs

    ERIC Educational Resources Information Center

    Bedwell, Mike

    2015-01-01

    This article is based on classroom application of a problem story constructed by Amos Tversky in the 1970s. His intention was to evaluate human beings' intuitions about statistical inference. The problem was revisited by his colleague, the Nobel Prize winner Daniel Kahneman. The aim of this article is to show how popular science textbooks can…

  4. Character Formation: A Forgotten Theme of Comenius's "Didactics"

    ERIC Educational Resources Information Center

    Habl, Jan

    2011-01-01

    The goal of this brief study is to present Comenius's notion of character formation as it is outlined primarily in his didactic writings, and to show its relevance for contemporary practice in relation to moral education. The Czech Jan Amos Comenius was a 17th-century Brethren bishop, philosopher, and educator who is celebrated especially for his…

  5. The Origin of Camphill and the Social Pedagogic Impulse

    ERIC Educational Resources Information Center

    Jackson, Robin

    2011-01-01

    In this paper the origin of the Camphill Movement will be outlined. Particular attention will be paid to the influence of the Moravian Brethren educational model in the development of the Camphill Schools. A key influence which helped to shape Camphill philosophy and practice was the writing of Jan Amos Comenius (1592-1670), a bishop in the…

  6. Potential nitrous oxide yield of AOA vs. AOB and utilization of carbon and nitrogen in the ammonia oxidizing process in the Pearl River Estuary

    NASA Astrophysics Data System (ADS)

    Ma, L.; Dai, M.; Tan, S.; Xia, X.; Liu, H.

    2016-12-01

    Nitrous oxide (N2O), a greenhouse gas, is a by-product during ammonia oxidation process, the production of which is often stimulated under low dissolved oxygen (DO) in the estuarine environment. The potential yield of N2O has been considered to be driven by ammonia-oxidizing bacteria (AOB) of Betaproteobacteria & Gammaproteobacteria and/or ammonia-oxidizing archaea (AOA) of Thaumarchaeota. In order to examine the relative importance of AOA and AOB in producing N2O and in modulating the potential N2O yield, arch-amoA, beta-amoA, gamma-amoA encoding for the alpha subunit of the ammonia monooxygenase (AMO) are used as biomarkers to identify the distributions and bioactivities of AOA and AOB in the Pearl River Estuary (PRE). Size fractionation experiments were conducted to distinguish AOA and AOB on particles in different size-fractions of > 3 μm, 0.45-3 μm, and 0.22-0.45 μm. Pure culture of N. maritimusSCM1 was studied as a model organism to identify the organic carbon production during ammonia oxidation by SCM1 strains. Our results show that AOA distributes largely in the free-living state and could adapt to very limited ammonia substrate and low saturation of DO; AOB mainly distributes at the particle-attached state under relative richer ammonia and high DO conditions; however, the RNA/DNA ratio of AOB was higher than that of AOA under the same conditions suggesting AOB is relatively more actively expressed. In the upper reach of PRE, the dominant microorganism in the water column was AOB and the in situ N2O/NH3 therein ranged 0.73-3.74 ‰. In the lower PRE, AOA was dominated, and the in situ N2O/NH3 was of 1.17- 7.32‰. At selected sites, we estimated isotope effect (e) of AOA (eDIC/bulk) as -23.94‰ and AOB (eDIC/bulk) as -56.6‰ to -44.8‰, which is consistent with the studies of pure cultures. The coefficient of C sequestration "k", defined as (C biomass / DIC in situ) / (N biomass / ammonia in situ) to differ the utilization of carbon and nitrogen, of

  7. A SIMS Study of Sulfur Isotopes of Accessory Pyrites Associated with Barites from Methane Cold Seeps in the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Morelli, E. C.; Aharon, P.

    2017-12-01

    Bacteria and archaea associated with seeps can fix methane from sublimating gas hydrates through coupled bacterial sulfate reduction/ anaerobic methane oxidation (BSR/AMO) and prevent outgassing to the atmosphere. The occurrence of such microbial processes has been established on the basis of the sulfur isotope compositions of microbial byproducts (pyrites; FeS2) that reflect the degree of fractionation between SO4 and FeS2 via the production of the H2S intermediate phase. BSR/AMO coupling has been discerned in accessory sulfides associated with carbonates from gas hydrate sites. Whether BSR/AMO coupling is also active in barites, another ubiquitous product of gas hydrate sublimation, has so far been overlooked. Here we present results of a new sulfur isotope study of accessory sulfides in barites associated with gas hydrates at the threshold of stability occurring on the Gulf of Mexico slope. Using a fractionation factor of 1.009 and a seawater δ34SSO4 value of 20.3‰ and assuming a Rayleigh distillation closed system model for marine sulfide precipitation, pyrites from barite gas seeps are predicted to exhibit a range of δ34S values (about -1‰ to 20‰ CDT) as the pool of sulfate is continuously depleted. Actual δ34S values could fall outside of the predicted range because the system in question is likely only partially closed and kinetic fractionations are likely. δ34S of accessory pyrites from three Garden Banks Lease Block 382 (510 - 640m water depth) and one Mississippi Canyon Lease Block 929 (590m) barite samples have been determined using an ims-1290 Secondary Ion Mass Spectrometer (SIMS). Two Garden Banks samples and one Mississippi Canyon sample reveal a spread of values from 5.30 ± 0.04 to 25.90 ± 0.09 (‰ CDT), which follow the predicted trend for gas seeps and indicate the source of fractionation is likely from the coupled BSR/AMO process. One Garden Banks sample yields a wide spread of values from -26.2 ± 0.05 to 20.5 ± 0.4 (‰ CDT). The

  8. "Me Amo Leer" Reading Experiences in a Central Illinois Summer Migrant Education Programme

    ERIC Educational Resources Information Center

    Pavri, Shireen; Bentz, Johnell; Bradley, Janetta Fleming; Corso, Laurie

    2005-01-01

    This paper describes the assessment and instructional strategies used in a migrant education programme that had positive academic outcomes for a group of 11 eight-to-12-year-old Spanish/English-speaking students of Mexican descent. Students attended this four-week summer programme, jointly sponsored by the University of Illinois and the local…

  9. Two-dimensional computer simulation of EMVJ and grating solar cells under AMO illumination

    NASA Technical Reports Server (NTRS)

    Gray, J. L.; Schwartz, R. J.

    1984-01-01

    A computer program, SCAP2D (Solar Cell Analysis Program in 2-Dimensions), is used to evaluate the Etched Multiple Vertical Junction (EMVJ) and grating solar cells. The aim is to demonstrate how SCAP2D can be used to evaluate cell designs. The cell designs studied are by no means optimal designs. The SCAP2D program solves the three coupled, nonlinear partial differential equations, Poisson's Equation and the hole and electron continuity equations, simultaneously in two-dimensions using finite differences to discretize the equations and Newton's Method to linearize them. The variables solved for are the electrostatic potential and the hole and electron concentrations. Each linear system of equations is solved directly by Gaussian Elimination. Convergence of the Newton Iteration is assumed when the largest correction to the electrostatic potential or hole or electron quasi-potential is less than some predetermined error. A typical problem involves 2000 nodes with a Jacobi matrix of order 6000 and a bandwidth of 243.

  10. Influence of Decadal Variability of Global Oceans on South Asian Monsoon and ENSO-Monsoon Relation

    NASA Astrophysics Data System (ADS)

    Krishnamurthy, Lakshmi

    This study has investigated the influence of the decadal variability associated with global oceans on South Asian monsoon and El Nino-Southern Oscillation (ENSO)-monsoon relation. The results are based on observational analysis using long records of monsoon rainfall and circulation and coupled general circulation model experiments using the National Center for Atmospheric Research (NCAR) Community Climate System Model (CCSM) version 4 model. The multi-channel singular spectrum analysis (MSSA) of the observed rainfall over India yields three decadal modes. The first mode (52 year period) is associated with the Atlantic Multidecadal Oscillation (AMO), the second one (21 year) with the Pacific Decadal Oscillation (PDO) and the third mode (13 year) with the Atlantic tripole. The existence of these decadal modes in the monsoon was also found in the control simulation of NCAR CCSM4. The regionally de-coupled model experiments performed to isolate the influence of North Pacific and North Atlantic also substantiate the above results. The relation between the decadal modes in the monsoon rainfall with the known decadal modes in global SST is examined. The PDO has significant negative correlation with the Indian Monsoon Rainfall (IMR). The mechanism for PDO-monsoon relation is hypothesized through the seasonal footprinting mechanism and further through Walker and Hadley circulations. The model results also confirm the negative correlation between PDO and IMR and the mechanism through which PDO influences monsoon. Both observational and model analysis show that droughts (floods) are more likely over India than floods (droughts) when ENSO and PDO are in their warm (cold) phase. This study emphasizes the importance of carefully distinguishing the different decadal modes in the SST in the North Atlantic Ocean as they have different impacts on the monsoon. The AMO exhibits significant positive correlation with the IMR while the Atlantic tripole has significant negative

  11. Moving Toward Improved Acquisition Outcomes: The Interrelationships Between Culture, Commitment, and Leadership

    DTIC Science & Technology

    2011-04-01

    structure modeling . Psychological Methods, 1, 130–149. Mowday, R. T., Porter , L. W., & Steers, R. M. (1982). Organizational linkages: The psychology of...Leadership, Structural Equation Modeling , Analysis of Moment Structures (AMOS), Organizational Productivity MOVING TOWARD IMPROVED ACQUISITION OUTCOMES...greater than the sum of their individual elements. A conceptual model was identified and used as the foundation for building hypotheses. Structural

  12. Investigations To Characterize Multi-Junction Solar Cells In The Stratosphere Using Low-Cost Balloon And Communication Technologies

    NASA Technical Reports Server (NTRS)

    Bowe, Glenroy A.; Wang, Qianghua; Woodyard, James R.; Johnston, Richard R.; Brown, William J.

    2005-01-01

    The use of current balloon, control and communication technologies to test multi-junction solar sell in the stratosphere to achieve near AMO conditions have been investigated. The design criteria for the technologies are that they be reliable, low cost and readily available. Progress is reported on a program to design, launch, fly and retrieve payloads dedicated to testing multi-junction solar cells.

  13. An Office Automation Needs Assessment Model

    DTIC Science & Technology

    1985-08-01

    TRACKING FORM . . . 74 I. CSD OFFICE SYSTEMS ANALYSIS WORKSHEETS . . . 75 J. AMO EVALUATIONS OF PROPOSED MODEL ...... 113 FOOTNOTES...as to "who should plan for office automated systems," a checklist of attributes should be evaluated , including: experience, expertise, availability of...with experience, differs with respect to breadth of knowledge in numerous areas. In evaluating in-house vs. outside resources, the Hospital Commander

  14. Between Heroes and Guardians: General Lyman L. Lemnitzer and General Charles H. Bonesteel III

    DTIC Science & Technology

    2015-05-21

    16 David S. Patterson , Paul Claussen, Evan M. Duncan, Jeffrey A. Soukup, eds., Foreign Relations...Korea, 1966-1969, Leavenworth Papers no 19 (Fort Leavenworth: Combat Studies Institute, 1991); Amos A. Jordan, Jr ., Issues of National Security in...Representative in Europe, Mutual Security Program, Paris, France, 1952-53. 20 Allan R. Millett, Peter Maslowski, and William B. Feis, For the Common

  15. Research on gallium arsenide diffused junction solar cells

    NASA Technical Reports Server (NTRS)

    Borrego, J. M.; Ghandi, S. K.

    1984-01-01

    The feasibility of using bulk GaAs for the fabrication of diffused junction solar cells was determined. The effects of thermal processing of GaAs was studied, and the quality of starting bulk GaAs for this purpose was assessed. These cells are to be made by open tube diffusion techniques, and are to be tested for photovoltaic response under AMO conditions.

  16. Waterford, Virginia: From Mill Town to National Historic Landmark. Teaching with Historic Places.

    ERIC Educational Resources Information Center

    Souders, Bronwen

    Waterford, Virginia, preserves the ambiance and many of the structures that characterized it during its heyday as a flour milling town in the 19th century. The village has changed so little in shape and size that founder Amos Janney would find it recognizable. He could stroll from his 1733 home to the area of his original mill and then on to the…

  17. Atlantic freshwater balance in the hysteresis of the meridional overturning circulation

    NASA Astrophysics Data System (ADS)

    Gregory, J. M.; Saenko, O. A.

    2003-04-01

    We have studied the hysteresis behaviour of the Atlantic meridional overturning circulation (AMO) in the UVic climate model, which comprises an ocean GCM coupled to an energy-moisture balance atmosphere model and a dynamic-thermodynamic sea ice model, all with a resolution of 3.6x1.8 degrees. As with some other models, we find that a slowly increasing freshwater flux applied to the north Atlantic causes the AMO to collapse rapidly when it passes a threshold, and that it returns equally quickly when the freshwater forcing falls below a negative freshwater flux threshold. During the collapse, the Atlantic becomes less saline because of the import of about 80 Sv yr of freshwater by the ocean across 30S; during the switch-on this freshwater is exported again. These abrupt import and export of freshwater at 30S of the Atlantic are associated with, respectively, the appearance and disappearance of a shallower reverse overturning circulation south of the Equator. Qualitatively similar hysteresis behaviour, with the same salinity flip-flop, can be produced by an internal transfer of water within the Atlantic from low to high latitudes, with no net freshwater forcing input north of 30S.

  18. Amorphous Mn oxide-ordered mesoporous carbon hybrids as a high performance electrode material for supercapacitors.

    PubMed

    Nam, Inho; Kim, Nam Dong; Kim, Gil-Pyo; Park, Junsu; Yi, Jongheop

    2012-07-01

    A supercapacitor has the advantages of both the conventional capacitors and the rechargeable batteries. Mn oxide is generally recognized one of the potential materials that can be used for a supercapacitor, but its low conductivity is a limiting factor for electrode materials. In this study, a hybrid of amorphous Mn oxide (AMO) and ordered mesoporous carbon (OMC) was prepared and characterized using X-ray diffraction, transmission electron microscopy, N2/77 K sorption techniques, and electrochemical analyses. The findings indicate that the electrochemical activities of Mn oxide were facilitated when it was in the hybrid state because OMC acted as a pathway for both the electrolyte ions and the electrons due to the characteristics of the ordered mesoporous structure. The ordered mesoporous structure of OMC was well maintained even after hybridization with amorphous Mn oxide. The electrochemical-activity tests revealed that the AMO/OMC hybrid had a higher specific capacitance and conductivity than pure Mn oxide. In the case where the Mn/C weight ratio was 0.75, the composite showed a high capacitance of 153 F/g, which was much higher than that for pure Mn oxide, due to the structural effects of OMC.

  19. An electrical analogy relating the Atlantic multidecadal oscillation to the Atlantic meridional overturning circulation.

    PubMed

    Kurtz, Bruce E

    2014-01-01

    The Atlantic meridional overturning circulation (AMOC) is the northward flow of surface water to subpolar latitudes where deepwater is formed, balanced by southward abyssal flow and upwelling in the vicinity of the Southern Ocean. It is generally accepted that AMOC flow oscillates with a period of 60-80 years, creating a regular variation in North Atlantic sea surface temperature known as the Atlantic multidecadal oscillation (AMO). This article attempts to answer two questions: how is the AMOC driven and why does it oscillate? Using methods commonly employed by chemical engineers for analyzing processes involving flowing liquids, apparently not previously applied to trying to understand the AMOC, an equation is developed for AMOC flow as a function of the meridional density gradient or the corresponding temperature gradient. The equation is based on the similarity between the AMOC and an industrial thermosyphon loop cooler, which circulates a heat transfer liquid without using a mechanical pump. Extending this equation with an analogy between the flow of heat and electricity explains why the AMOC flow oscillates and what determines its period. Calculated values for AMOC flow and AMO oscillation period are in good agreement with measured values.

  20. An Electrical Analogy Relating the Atlantic Multidecadal Oscillation to the Atlantic Meridional Overturning Circulation

    PubMed Central

    Kurtz, Bruce E.

    2014-01-01

    The Atlantic meridional overturning circulation (AMOC) is the northward flow of surface water to subpolar latitudes where deepwater is formed, balanced by southward abyssal flow and upwelling in the vicinity of the Southern Ocean. It is generally accepted that AMOC flow oscillates with a period of 60–80 years, creating a regular variation in North Atlantic sea surface temperature known as the Atlantic multidecadal oscillation (AMO). This article attempts to answer two questions: how is the AMOC driven and why does it oscillate? Using methods commonly employed by chemical engineers for analyzing processes involving flowing liquids, apparently not previously applied to trying to understand the AMOC, an equation is developed for AMOC flow as a function of the meridional density gradient or the corresponding temperature gradient. The equation is based on the similarity between the AMOC and an industrial thermosyphon loop cooler, which circulates a heat transfer liquid without using a mechanical pump. Extending this equation with an analogy between the flow of heat and electricity explains why the AMOC flow oscillates and what determines its period. Calculated values for AMOC flow and AMO oscillation period are in good agreement with measured values. PMID:24940739

  1. Ammonia-oxidizing bacteria and archaea in wastewater treatment plant sludge and nearby coastal sediment in an industrial area in China.

    PubMed

    Zhang, Yan; Chen, Lujun; Sun, Renhua; Dai, Tianjiao; Tian, Jinping; Wen, Donghui

    2015-05-01

    Under the increasing pressure of human activities, Hangzhou Bay has become one of the most seriously polluted waters along China's coast. Considering the excessive inorganic nitrogen detected in the bay, in this study, the impact of an effluent from a coastal industrial park on ammonia-oxidizing microorganisms (AOMs) of the receiving area was interpreted for the first time by molecular technologies. Revealed by real-time PCR, the ratio of archaeal amoA/bacterial amoA ranged from 5.68 × 10(-6) to 4.79 × 10(-5) in the activated sludge from two wastewater treatment plants (WWTPs) and 0.54-3.44 in the sediments from the effluent receiving coastal area. Analyzed by clone and pyrosequencing libraries, genus Nitrosomonas was the predominant ammonia-oxidizing bacteria (AOB), but no ammonia-oxidizing archaea (AOA) was abundant enough for sequencing in the activated sludge from the WWTPs; genus Nitrosomonas and Nitrosopumilus were the dominant AOB and AOA, respectively, in the coastal sediments. The different abundance of AOA but similar structure of AOB between the WWTPs and nearby coastal area probably indicated an anthropogenic impact on the microbial ecology in Hangzhou Bay.

  2. Development of thin wraparound junction silicon solar cells

    NASA Technical Reports Server (NTRS)

    Ho, F.; Iles, P. A.

    1981-01-01

    The state of the art technologies was applied to fabricate 50 micro thick 2x4 cm, coplanar back contact (CBC) solar cells with AMO efficiency above 12%. A requirement was that the cells have low solar absorptance. A wraparound junction (WAJ) with wraparound metallization was chosen. This WAJ approach avoided the need for very complex fixturing, especially during rotation of the cells for providing adequate contacts over dielectric edge layers. The contact adhesion to silicon was considered better than to an insulator. It is indicated that shunt resistance caused by poor WAJ diode quality, and series resistance from the WAJ contact, give good cell performance. The cells developed reached 14 percent AMO efficiency (at 25 C), with solar absorptance values of 0.73. Space/cell environmental tests were performed on these cells and the thin CSC cells performed well. The optimized design configuration and process sequence were used to make 50 deliverable CBC cells. These cells were all above 12 percent efficiency and had an average efficiency of -13 percent. Results of environmental tests (humidity-temperature, thermal shock, and contact adherence) are also given.

  3. Influences of volcano eruptions on Asian Summer Monsoon over the last 110 years.

    PubMed

    Ning, Liang; Liu, Jian; Sun, Weiyi

    2017-02-16

    Asian summer monsoon (ASM) precipitation is the primary water resource for agriculture in many Asian countries that have experienced rapid economic growth in recent decades, thus implying the necessity for further investigations on both the internal variability of the ASM and the influence of external factors on the ASM. Using long-term high-resolution (0.5° × 0.5°) observed precipitation data, contrary to previous studies on inter-annual timescale, we showed that over the last 110 years, volcanic eruptions have influenced ASM variations on an inter-decadal timescale via teleconnections with the Atlantic Multi-decadal Oscillation (AMO). This relationship was also confirmed by Coupled Model Intercomparison Program Phase 5 (CMIP5) model simulations. During the active volcanic eruption periods (1901-1935 and 1963-1993), significantly lower ASM precipitation was observed compared with that during the inactive volcanic eruption period (1936-1962). We found that during active volcanic eruption periods, which correspond to a negative AMO state, there is an anomalously weakened Walker circulation over the tropical Pacific that transports less moisture to the ASM region and subsequently reduces ASM precipitation. This new finding may help improve decadal predictions of future changes in the ASM.

  4. Influences of volcano eruptions on Asian Summer Monsoon over the last 110 years

    NASA Astrophysics Data System (ADS)

    Ning, Liang; Liu, Jian; Sun, Weiyi

    2017-02-01

    Asian summer monsoon (ASM) precipitation is the primary water resource for agriculture in many Asian countries that have experienced rapid economic growth in recent decades, thus implying the necessity for further investigations on both the internal variability of the ASM and the influence of external factors on the ASM. Using long-term high-resolution (0.5° × 0.5°) observed precipitation data, contrary to previous studies on inter-annual timescale, we showed that over the last 110 years, volcanic eruptions have influenced ASM variations on an inter-decadal timescale via teleconnections with the Atlantic Multi-decadal Oscillation (AMO). This relationship was also confirmed by Coupled Model Intercomparison Program Phase 5 (CMIP5) model simulations. During the active volcanic eruption periods (1901-1935 and 1963-1993), significantly lower ASM precipitation was observed compared with that during the inactive volcanic eruption period (1936-1962). We found that during active volcanic eruption periods, which correspond to a negative AMO state, there is an anomalously weakened Walker circulation over the tropical Pacific that transports less moisture to the ASM region and subsequently reduces ASM precipitation. This new finding may help improve decadal predictions of future changes in the ASM.

  5. Influence of Effluent Irrigation on Community Composition and Function of Ammonia-Oxidizing Bacteria in Soil

    PubMed Central

    Oved, Tamar; Shaviv, Avi; Goldrath, Tal; Mandelbaum, Raphi T.; Minz, Dror

    2001-01-01

    The effect of effluent irrigation on community composition and function of ammonia-oxidizing bacteria (AOB) in soil was evaluated, using techniques of molecular biology and analytical soil chemistry. Analyses were conducted on soil sampled from lysimeters and from a grapefruit orchard which had been irrigated with wastewater effluent or fertilizer-amended water (FAW). Specifically, comparisons of AOB community composition were conducted using denaturing gradient gel electrophoresis (DGGE) of PCR-amplified fragments of the gene encoding the α-subunit of the ammonia monooxygenase gene (amoA) recovered from soil samples and subsequent sequencing of relevant bands. A significant and consistent shift in the population composition of AOB was detected in soil irrigated with effluent. This shift was absent in soils irrigated with FAW, despite the fact that the ammonium concentration in the FAW was similar. At the end of the irrigation period, Nitrosospira-like populations were dominant in soils irrigated with FAW, while Nitrosomonas-like populations were dominant in effluent-irrigated soils. Furthermore, DGGE analysis of the amoA gene proved to be a powerful tool in evaluating the soil AOB community population and population shifts therein. PMID:11472914

  6. Dihydroartemisinin-induced apoptosis in human acute monocytic leukemia cells

    PubMed Central

    Cao, Jia-Tian; Mo, Hui-Min; Wang, Yue; Zhao, Kai; Zhang, Tian-Tian; Wang, Chang-Qian; Xu, Kai-Lin; Han, Zhi-Hua

    2018-01-01

    Dihydroartemisinin (DHA) is a derivative of artemisinin. The present study aimed to investigate whether DHA induces apoptosis in the THP-1 human acute monocytic leukemia cell line (AMoL), and to identify the relative molecular mechanisms. The results of the present study demonstrated that the viability of THP-1 cells were inhibited by DHA in a dose- and time-dependent manner, which was accompanied by morphological characteristics associated with apoptosis. After 24 h of 200 µM DHA treatment, the proportion of apoptotic cells was significantly increased compared with the untreated controls (P<0.01). In addition, DHA downregulated the levels of B-cell lymphoma (Bcl)-2, protein kinase B (Akt)1, Akt2 and Akt3 gene expression, and increased the expression of the Bcl-2-associated X protein apoptosis regulator. The protein expression of phospho-Akt and phospho-extracellular signal-regulated kinase (ERK) was also decreased, and the protein expression level of cleaved caspase-3 was increased following treatment with DHA. Therefore, DHA may induce apoptosis in the AMoL THP-1 cell line via currently unknown underlying molecular mechanisms, including the downregulation of ERK and Akt, and the activation of caspase-3. PMID:29435054

  7. Wave Propagation in Laterally Varying Media: A Model Expansion Method

    DTIC Science & Technology

    1991-05-01

    91125 .Mr. William 3. Best Prof. F. A. Dahlen 907 Westwood Drive Geological and Geophysical Sciences Vienna, VA 22180 P’inceton University Princeton... William Menke Prof. Charles G. Sammis Lamont-Doherty Geological Observatory Center for Earth Sciences of Columbia University University of Southern...Pineda Court c. 6 William Kikendall Prof. Amos Nur Teledyne Geotech Department of Geophysics 3401 Shiloh Road Stanford University Garland, TX 75041

  8. Real-time Astrometry Using Phase Congruency

    NASA Astrophysics Data System (ADS)

    Lambert, A.; Polo, M.; Tang, Y.

    Phase congruency is a computer vision technique that proves to perform well for determining the tracks of optical objects (Flewelling, AMOS 2014). We report on a real-time implementation of this using an FPGA and CMOS Image Sensor, with on-sky data. The lightweight instrument can provide tracking update signals to the mount of the telescope, as well as determine abnormal objects in the scene.

  9. Review of LOGEX. Main Report and Appendixes A-I

    DTIC Science & Technology

    1975-05-23

    been developed on an RCA Spectra 70 machine located at the Army Logistics Management Center, Fort Lee, Virginia. This was undoubtedly an outstanding...Control Number ADP - Automatic Data Processing ACT - Active Duty for Training ALMC - US Army Logistics Management Center AMO - Ammunition AR - Amy...Directorate CPT McClellan, LOGEX Directorate CPT Weaver, LOGEX Directorate United States Army Logistics Management Center Mr. Loper Mr. Ross United States

  10. Alternate Altitude Testing of Solid Cloth Parachute Systems

    DTIC Science & Technology

    1985-05-01

    tso M 1 2W 0AMo - Asok -I80 pgCDSo2 b. Calculate BKR from Equations (A4-6) 2W pgV soDo c. Calculate the required weight and inflation distance at...Library 2 Thomas D. HoffmanI Annapolis, MD 21402 DRDAR-LC.,. Z Ray W. Kline Commanding Officer DRDAR-LCA-F U. S. Naval Air Development Dover, NJ 07801

  11. Minutes of the Explosives Safety Seminar (21st) Held at Houston, Texas on 28-30 August 1984. Volume 2

    DTIC Science & Technology

    1984-01-01

    Brigham City, Utah 84302 ERICKSONo Jack A. Federal Cartridge Corp*, Anoka, mi 555303 ERNEST , William F. USA Defense Amo Ctr 6 School, Savanna, IL 61074-9639...Explosives Safety Board, Alex., VA 22331-0600 PRICE, William A. ASD/SEV USAF, Wright- Patterson APB, 0OR 45433 PROHASKA, Frank B. NAVSEACENPAC, San Diego, CA...1103 Paul W. Lurk COMPLEXITIES OF LEA AZIDE.,. ...... ........................ .. ,... 1143 William Shaneyfelt SESSION L--EXPLOSION RESISTANT

  12. Detailed Comparisons of COMBAT Data to Wave-Optics Simulations

    DTIC Science & Technology

    2015-10-18

    2010 along the path between Mauna Loa and Haleakala and is one of many to investigate atmospheric effects in long horizontal optical paths [1-7]. The...Relatively strong jitter sources near transmitter ( atmosphere or telescope). Rationale: Turbulence -induced scintillation alone does not explain the...Characterization of atmospheric turbulence effects over 149 km propagation path using multi-wavelength laser beacons,” in Proceedings of the 2010 AMOS

  13. 77 FR 10952 - Airworthiness Directives; CFM International S.A. Model CFM56 Turbofan Engines

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-24

    .../N) and serial number (SN) high-pressure compressor (HPC) 4-9 spools installed. In Table 1 of the AD, the HPC 4-9 spool SN GWN05AMO in the 2nd column of the Table is incorrect. This document corrects that...), currently requires removing certain HPC 4-9 spools listed by P/N and SN in the AD. As published, in Table 1...

  14. Fundamental Limitations for Imaging GEO Satellites

    DTIC Science & Technology

    2015-10-18

    details of a geostationary satellite can be phase stabilized. We conclude that it is possible to phase such an interferometer with shorter baselines using...Jorgensen, A., Restaino, S., Armstrong, J., Baines, E., Hindsley, R. “Simulated Synthesis Imaging of Geostationary Satellites” Proceedings of the AMOS...A. M. “Simulated optical interferometric observations of geostationary satellites” Proceedings of the SPIE 8165, 2011 [3] C Leinert, S. Bowyer, L

  15. Population and community structure shifts of ammonia oxidizers after four-year successive biochar application to agricultural acidic and alkaline soils.

    PubMed

    He, Lili; Bi, Yucui; Zhao, Jin; Pittelkow, Cameron M; Zhao, Xu; Wang, Shenqiang; Xing, Guangxi

    2018-04-01

    Long-term studies that advance our mechanistic understanding of biochar (BC)‑nitrogen (N) interactions in agricultural soils are lacking. In this study, soil potential nitrification rates (PNR), the abundance and composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) communities following 4-year of BC application were investigated using the shaken-slurry procedure and molecular sequencing techniques for an acidic Oxisol (QU) and an alkaline Cambisol (YU). Soils were obtained from an outdoor soil column experiment with straw-BC application rates of 0 (BC0), 2.25 (BC2.25) and 11.3 (BC11.3) Mgha -1 per cropping season for eight consecutive wheat/millet seasons. Quantitative polymerase chain reaction (qPCR) and 454 high-throughput pyrosequencing techniques were performed to quantify and sequence amoA gene copies and composition of AOA and AOB. Results showed that QU had lower PNR and a higher ratio of amoA gene copies of AOA to AOB than YU, PNR of QU with BC application was significantly associated with the amoA gene of AOB. Similar to previous short-term findings, BC application enhanced QU soil nitrification, which may be explained by the significant increase in AOB abundance and a shift in AOB community structure from Nitrosospira cluster 2 toward cluster 3, along with the disappearance of some obligate acidophile AOA groups, leading to the appearance of ammonia-oxidizers from neutral-alkaline soils in BC-amended acid soils. Canonical correspondence analysis (CCA) showed that soil pH was the most important factor driving shifts in ammonia-oxidizers composition. Although BC application did not have significant effects on PNR in YU, BC11.3 decreased AOA and AOB gene copies and influenced the relative abundance of community structure. Our findings represent the first investigation of long-term BC effects on AOA and AOB communities in agricultural soils using 454 high-throughput pyrosequencing, showing that BC application can alter soil

  16. Climate Variability and Wildfires: Insights from Global Earth System Models

    NASA Astrophysics Data System (ADS)

    Ward, D. S.; Shevliakova, E.; Malyshev, S.; Lamarque, J. F.; Wittenberg, A. T.

    2016-12-01

    Better understanding of the relationship between variability in global climate and emissions from wildfires is needed for predictions of fire activity on interannual to multi-decadal timescales. Here we investigate this relationship using the long, preindustrial control simulations and historical ensembles of two Earth System models; CESM1 and the NOAA/GFDL ESM2Mb. There is smaller interannual variability of global fires in both models than in present day inventories, especially in boreal regions where observed fires vary substantially from year to year. Patterns of fire response to climate oscillation indices, including the El Niño / Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO) and Atlantic Meridional Oscillation (AMO) are explored with the model results and compared to the response derived from satellite measurements and proxy observations. Increases in fire emissions in southeast Asia and boreal North America are associated with positive ENSO and PDO, while United States fires and Sahel fires decrease for the same climate conditions. Boreal fire emissions decrease in CESM1 for the warm phase of the AMO, while ESM2Mb did not produce a reliable AMO. CESM1 produces a weak negative trend in global fire emissions for the period 1920 to 2005, while ESM2Mb produces a positive trend over the same period. Both trends are statistically significant at a confidence level of 95% or greater given the variability derived from the respective preindustrial controls. In addition to climate variability impacts on fires, we also explore the impacts of fire emissions on climate variability and atmospheric chemistry. We analyze three long, free-evolving ESM2Mb simulations; one without fire emissions, one with constant year-over-year fire emissions based on a present day inventory, and one with interannually varying fire emissions coupled between the terrestrial and atmospheric components of the model, to gain a better understanding of the role of fire emissions in

  17. ENSO and East Asian winter monsoon relationship modulation associated with the anomalous northwest Pacific anticyclone

    NASA Astrophysics Data System (ADS)

    Kim, Ji-Won; An, Soon-Il; Jun, Sang-Yoon; Park, Hey-Jin; Yeh, Sang-Wook

    2017-08-01

    Using observational datasets and numerical model experiments, the mechanism on the slowly varying change in the relationship between the El Niño-Southern Oscillation (ENSO) and the East Asian winter monsoon (EAWM) is investigated. The decadal-window (11-, 15-, and 21-year) moving correlations show a significant change in the boreal wintertime ENSO-EAWM relationship between two sub-periods of 1976‒1992 and 1997‒2013. Such recent change in ENSO-EAWM relationship is mainly attributed to the changes in the intensity and zonal location of the anomalous lower-tropospheric northwest Pacific anticyclone (NWP-AC). NWP-AC commonly develops near the region of the Philippine Sea during the ENSO's peak phase and plays an important role of bridging the tropical convection and mid-latitude teleconnection. On one hand, the intensity of the NWP-AC is influenced by the interdecadal variation in a linkage between ENSO and the Indian Ocean sea surface temperature (SST) variability, referring that a strong connection between the Pacific and Indian Oceans results in the strengthening of NWP-AC response to ENSO. On the other hand, the zonal displacement of the NWP-AC is associated with the Pacific Decadal Oscillation (PDO) and the Atlantic Multidecadal Oscillation (AMO). That is, the tropical Pacific mean state (i.e., zonal SST gradient between climatologically warm western Pacific and cold eastern Pacific)—strengthened by either the negative PDO phase or the positive AMO phase—drives the anomalous ENSO-induced convection to be shifted to the west. With this westward shift, the zonal center of the NWP-AC also migrates westward over the Philippine Islands and exerts stronger connection between ENSO and EAWM. In contrast, the relaxed zonal SST contrast associated with either the positive PDO phase or the negative AMO phase tends to exhibit weaker ENSO-EAWM relationship via both of eastward shifted zonal centers of the anomalous ENSO-induced convection and the NWP-AC. Finally, a

  18. Competition for ammonia influences the structure of chemotrophic communities in geothermal springs.

    PubMed

    Hamilton, Trinity L; Koonce, Evangeline; Howells, Alta; Havig, Jeff R; Jewell, Talia; de la Torre, José R; Peters, John W; Boyd, Eric S

    2014-01-01

    Source waters sampled from Perpetual Spouter hot spring (pH 7.03, 86.4°C), Yellowstone National Park, WY, have low concentrations of total ammonia, nitrite, and nitrate, suggesting nitrogen (N) limitation and/or tight coupling of N cycling processes. Dominant small-subunit rRNA sequences in Perpetual Spouter source sediments are closely affiliated with the ammonia-oxidizing archaeon "Candidatus Nitrosocaldus yellowstonii" and the putatively nitrogen-fixing (diazotrophic) bacterium Thermocrinis albus, respectively, suggesting that these populations may interact at the level of the bioavailable N pool, specifically, ammonia. This hypothesis was evaluated by using a combination of geochemical, physiological, and transcriptomic analyses of sediment microcosms. Amendment of microcosms with allylthiourea, an inhibitor of ammonia oxidation, decreased rates of acetylene reduction (a proxy for N2 fixation) and nitrite production (a proxy for ammonia oxidation) and decreased transcript levels of structural genes involved in both nitrogen fixation (nifH) and ammonia oxidation (amoA). In contrast, amendment of microcosms with ammonia stimulated nitrite production and increased amoA transcript levels while it suppressed rates of acetylene reduction and decreased nifH transcript levels. Sequencing of amplified nifH and amoA transcripts from native sediments, as well as microcosms, at 2 and 4 h postamendment, indicates that the dominant and responsive populations involved in ammonia oxidation and N2 fixation are closely affiliated with Ca. Nitrosocaldus yellowstonii and T. albus, respectively. Collectively, these results suggest that ammonia-oxidizing archaea, such as Ca. Nitrosocaldus yellowstonii, have an apparent affinity for ammonia that is higher than that of the diazotrophs present in this ecosystem. Depletion of the bioavailable N pool through the activity of ammonia-oxidizing archaea likely represents a strong selective pressure for the inclusion of organisms capable of

  19. Competition for Ammonia Influences the Structure of Chemotrophic Communities in Geothermal Springs

    PubMed Central

    Hamilton, Trinity L.; Koonce, Evangeline; Howells, Alta; Havig, Jeff R.; Jewell, Talia; de la Torre, José R.; Peters, John W.

    2014-01-01

    Source waters sampled from Perpetual Spouter hot spring (pH 7.03, 86.4°C), Yellowstone National Park, WY, have low concentrations of total ammonia, nitrite, and nitrate, suggesting nitrogen (N) limitation and/or tight coupling of N cycling processes. Dominant small-subunit rRNA sequences in Perpetual Spouter source sediments are closely affiliated with the ammonia-oxidizing archaeon “Candidatus Nitrosocaldus yellowstonii” and the putatively nitrogen-fixing (diazotrophic) bacterium Thermocrinis albus, respectively, suggesting that these populations may interact at the level of the bioavailable N pool, specifically, ammonia. This hypothesis was evaluated by using a combination of geochemical, physiological, and transcriptomic analyses of sediment microcosms. Amendment of microcosms with allylthiourea, an inhibitor of ammonia oxidation, decreased rates of acetylene reduction (a proxy for N2 fixation) and nitrite production (a proxy for ammonia oxidation) and decreased transcript levels of structural genes involved in both nitrogen fixation (nifH) and ammonia oxidation (amoA). In contrast, amendment of microcosms with ammonia stimulated nitrite production and increased amoA transcript levels while it suppressed rates of acetylene reduction and decreased nifH transcript levels. Sequencing of amplified nifH and amoA transcripts from native sediments, as well as microcosms, at 2 and 4 h postamendment, indicates that the dominant and responsive populations involved in ammonia oxidation and N2 fixation are closely affiliated with Ca. Nitrosocaldus yellowstonii and T. albus, respectively. Collectively, these results suggest that ammonia-oxidizing archaea, such as Ca. Nitrosocaldus yellowstonii, have an apparent affinity for ammonia that is higher than that of the diazotrophs present in this ecosystem. Depletion of the bioavailable N pool through the activity of ammonia-oxidizing archaea likely represents a strong selective pressure for the inclusion of organisms capable

  20. Historical fire and multidecadal drought as context for piñon - Juniper woodland restoration in western Colorado

    USGS Publications Warehouse

    Shinneman, Douglas J.; Baker, William L.

    2009-01-01

    Fire is known to structure tree populations, but the role of broad-scale climate variability is less clear. For example, the influence of climatic “teleconnections” (the relationship between oceanic–atmospheric fluctuations and anomalous weather patterns across broad scales) on forest age structure is relatively unexplored. We sampled semiarid piñon–juniper (Pinus edulis–Juniperus osteosperma) woodlands in western Colorado, USA, to test the hypothesis that woodland age structures are shaped by climate, including links to oceanic–atmospheric fluctuations, and by past fires and livestock grazing. Low-severity surface fire was lacking, as fire scars were absent, and did not influence woodland densities, but stand-replacing fires served as long-rotation (>400–600 years), stand-initiating events. Old-growth stands (>300 years old) were found in 75% of plots, consistent with a long fire rotation. Juniper and piñon age structures suggest contrasting responses during the past several centuries to dry and wet episodes linked to the Atlantic Multidecadal Oscillation (AMO) and Pacific Decadal Oscillation (PDO). Juniper density increased slightly during periods of drought, positive (warm) AMO (after ∼10-year lag), and negative (cool) PDO. In contrast, piñon populations may still be recovering from a long, drought-filled period (AD 1620–1820), with pulses of recovery favored during cool AMO, warm PDO, and above-average moisture periods. Analysis of 20th-century tree establishment and instrumental climate data corroborate the long-term relationships between age structure and climate. After Euro–American settlement (AD 1881), livestock grazing reduced understory grasses and forbs, reducing competition with tree seedlings and facilitating climate-induced increases in piñons. Thus tree populations in these woodlands are in flux, affected by drought and wet periods linked to oceanic–atmospheric variability, Euro–American livestock grazing, and long