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1
ENVIRONMENTAL ORIGINS OF SEXUALLY SELECTED VARIATION AND A CRITIQUE OF THE FLUCTUATING ASYMMETRY�SEXUAL SELECTION ...

... the dung fly Sepsis cynipsea: testing the good genes�assumptions and ... in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 98:5677�5682. ... ...

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2
FLATWORM PREDATION ON JUVENILE FRESHWATER MUSSELS A Thesis

specifically disrupts gene expression during planarian regeneration. Proc. Natl Acad. Sci. USA 96, 5049

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3
Center for Cancer Research - Staff Pages

Frap, FKBP12 rapamycin-associated protein, is a candidate gene for the plasmacytoma resistance locus Pctr2 and can act as a tumor suppressor gene. Proc. Natl. Acad. Sci.

Cancer.gov

4
Variations in IBD (ACAD8) in children with elevated C4-carnitine detected by tandem mass spectrometry newborn screening.
2006-07-20

The isobutyryl-CoA dehydrogenase (IBD) enzyme is involved in the degradation of valine. IBD deficiency was first reported in 1998 and subsequent genetic investigations identified acyl-CoA dehydrogenase (ACAD) 8, now IBD, as the gene responsible for IBD deficiency. Only three individuals homozygous or compound heterozygous for ...

PubMed

5
SEX-LIMITED MUTATIONS AND THE EVOLUTION OF SEXUAL DIMORPHISM

... dependent expression of the mouse sex-limited protein gene. Mol. Endocrinol ... in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 94:9734�9739. ... ...

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6
MINOR QUANTITATIVE TRAIT LOCI UNDERLIE FLORAL TRAITS ASSOCIATED WITH MATING SYSTEM DIVERGENCE IN MIMULUS

... a major gene effect: paedomorphosis in the Mexican axolotl. Proc. Natl. Acad. Sci. USA 94:14185�14189. ... ...

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7
HOST-INDUCED ASSORTATIVE MATING IN HOST RACES OF THE LARCH BUDMOTH

... borer moths is determined by both autosomal and sex-linked genes. Proc. Natl. Acad. Sci. USA 84:7585�7589. ... ...

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8
Center for Cancer Research - Staff Pages

POTE, a highly homologous gene family located on numerous chromosomes and expressed in prostate, ovary, testis, placenta, and prostate cancer. Proc. Natl. Acad. Sci.

Cancer.gov

9
Center for Cancer Research - Staff Pages

Topical colchicine selection of keratinocytes transduced with the multidrug resistance gene (MDR1) can sustain and enhance transgene expression in vivo. Proc Natl Acad Sci U S A.

Cancer.gov

10
12.-PRELIMINARY REPORT UPON THE INVERTEBRATE ANIMALSINHABITING LAKES GENEVA AND MENDOTA, WISCONSIN, WITH AN ACCOUNT

of planarian homeobox sequences indicates the antiquity of most hox/homeotic gene subclasses. Proc. Natl. Acad

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11
Huntington's disease Between genes and

Huntington's disease Between genes and environment Proc. Natl Acad. Sci. USA 101, 3498�3503 (2004) The fatal, inherited neurodegenerative disorder called Huntington's disease is caused by a three with the Huntington's disease gene or work in the brain cells that it destroys. The other 60% is determined

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12
Centrin Protein and Genes in Trichomonas vaginalis and Close Relatives

... new mammalian centrin gene, more closely related to Saccharomyces cerevisiae CDC31 gene. Proc. Natl. Acad. Sci. USA 94: ... The calcium-binding cell division cycle 31 of Saccharomyces cerevisiae is a compo...

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13
Mitochondrial fatty acid oxidation defects--remaining challenges.
2008-10-07

Mitochondrial fatty acid oxidation defects have been recognized since the early 1970s. The discovery rate has been rather constant, with 3-4 'new' disorders identified every decade and with the most recent example, ACAD9 deficiency, reported in 2007. In this presentation we will focus on three of the 'old' defects: medium-chain acyl-CoA dehydrogenase (MCAD) deficiency, ...

PubMed

14
Friedreich ataxia in Acadian families from eastern Canada: Clinical diversity with conserved haplotypes
1996-09-06

The gene for Friedreich ataxia (FRDA), an autosomal-recessive neurodegenerative disease, remains elusive. The current candidate region of about 150 kb lies between loci FR2 and F8101 near the D9S15/D9S5 linkage group at 9q13-21.1. Linkage homogeneity between classical FRDA and a milder, slowly progressive Acadian variant (FRDA-Acad) has been demonstrated. ...

Energy Citations Database

15
Center for Cancer Research - Staff Pages

Frap, FKBP12 rapamycin-associated protein, is a candidate gene for the plasmacytoma resistance locus Pctr2 and can act as a tumor suppressor gene. Proc Natl Acad Sci U S A.

Cancer.gov

16
Rapid increases in the interest in algae based bio-fuels have provided the opportunity for

recombination between the multiple genes of the aflatoxin pathway to connect selection of a genotype directly and recombination in the aflatoxin-producing fungus Aspergillus flavus. Proc. Natl. Acad. Sci. U. S. A. 95, 388)Crypticspeciationandrecombinationinthe aflatoxin- producingfungus Aspergillus flavus. Proc.Natl.Acad.Sci.U.S. A. ...

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17
Proc. Natl. Acad. Sci. USA Vol. 87, PD. 593-597, Januarv 1990

closely related to Helianthus praecox Engelm. and Gray and Helianthus petiolaris Nutt. than to H , annuusProc. Natl. Acad. Sci. USA Vol. 87, PD. 593-597, Januarv 1990 Helianthus annuus ssp. texanus has chloroplast DNA and nuclear ribosomal RNA genes of Helianthus debilis ssp. cucumerifolius (hybridization

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18
Novel mutation in the Delta-sterol reductase gene in three Lebanese sibs with Smith-Lemli-Opitz (RSH) syndrome.
2002-06-15

The Smith-Lemli-Opitz syndrome (SLOS), or RSH syndrome, is a well-characterized multiple congenital anomalies/mental retardation syndrome. The phenotype has been redefined to include mildly affected individuals with minor anomalies and developmental delay, and severe malformations with pre- and perinatal mortality. The condition is due to the deficient activity of the enzyme 7-dehydrocholesterol ...

PubMed

19
curves reconstructed for dinosaurs are realistic, because other types of curve might fit better, and few data at their

�riostique chez Anas platyrhynchos. C. R. Acad. Sci. 319, 301�308 5 Horner, J.R. et al. (1999) Variation

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20
Rediscovering Rana onca: Evidence for Phylogenetically Distinct Leopard Frogs from the Border Region of Nevada, Utah, ...

... Amphibians and reptiles in Nevada. Proc. Am. Acad. Arts Sci 73:197�257. ... Li. 1979. Mathematical model for studying genetic variation in terms of ... ...

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21
OPPOSING NATURAL SELECTION FROM HERBIVORES AND PATHOGENS MAY MAINTAIN FLORAL-COLOR VARIATION IN CLAYTONIA VIRGINICA ...

... L. Arnold. 1994. Floral and ecological isolation between Aquilegia formosa and Aquilegia pubescens. Proc. Natl. Acad. Sci 91:2493�2496. ... ...

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22
Allocation Rules for Sequential Clinical Trials.
1982-01-01

The work of Flehingher, Louis, Robbins, and Singer (Proc. Nat. Acad. Sci. U.S.A., 1972), Robbins and Siegmund (JASA, 1974), Louis (Biometrika, 1975), and Hayre (Biometrika, 1979) is reviewed. Variations of the basic model, including stratification and ran...

National Technical Information Service (NTIS)

23
Polymorphism in the couch potato gene clines in eastern Australia but is not associated with ovarian dormancy in Drosophila melanogaster.
2011-06-20

Natural selection can generate parallel latitudinal clines in traits and gene frequencies across continents, but these have rarely been linked. An amino acid (isoleucine to lysine, or I462K) polymorphism of the couch potato (cpo) gene in Drosophila melanogaster is thought to control female reproductive diapause cline in North America (Schmidt et al. 2008, ...

PubMed

24
Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years

. Proc Natl Acad Sci USA. 104:5516�5520. Lawrence JG. 1997. Selfish operons and speciation by geneIntegration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many with the uptake of foreign genes through horizontal gene transfer. However, it has remained unclear ...

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25
Update to Heyer's �One Founder/One Gene Hypothesis in a New Expanding Population� (1999)

... F., and E. Heyer. 1998. Social transmission of reproductive behavior increases frequency of inherited disorders in a young expanding population. Proc. Natl. Acad. ... ...

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26
Searching for Sequence Directed Mutagenesis in Eukaryotes Emmanuel D. Ladoukakis, Adam Eyre-Walker

from a phylogenetic history of human alpha-interferon genes. Proc Natl Acad Sci USA 82:8577�8581 Lander studied in eukaryotes. Concurrent substitutions in human interferon (Golding and Glickman 1985

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27
Pax6 in the sepiolid squid Euprymna scolopes: evidence for a role in eye, sensory organ and brain development

of a Pax6 gene in the regenerating and intact Planarian Dugesia(G)tigrina. Proc. Natl. Acad. Sci. USA 96

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28
No Fitness Cost for Wheat's H Gene-Mediated Resistance to Hessian Fly (Diptera: Cecidomyiidae)

... proteinase inhibitor production incurs large fitness costs in Nicotiana attenuata. Proc. Natl. Acad. Sci. U.S.A. 101: ... ...

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29
Mutations of ACADS gene associated with short-chain acyl-coenzyme A dehydrogenase deficiency.
2011-01-01

Short-chain acyl-coenzyme A dehydrogenase deficiency (SCADD) is an autosomal recessive disorder of mitochondrial fatty acid oxidation associated with mutations in the ACADS gene (Acyl-CoA Dehydrogenase, Short-chain, OMIM #606885). SCADD is a heterogeneous condition that has been associated with various clinical phenotypes ranging from fetal metabolic ...

PubMed

30
Light Deprivation Affects Larval Development and Arrestin Gene Expression in Anopheles stephensi

... Carlson, and L. J. Zwiebel. Visual arrestins in olfactory pathways of Drosophila and the malaria vector mosquito Anopheles gambiae. Proc. Natl. Acad. Sci. U.S. ... ...

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31
Impaired Flagellar Regeneration Due to Uncoordinated Expression of Two Divergent Actin Genes in Chlamydomonas

... L. Rosenbaum. 1993. A motility in the eukaryotic flagellum unrelated to flagellar beating. Proc Natl Acad Sci ... cofilin, is essentially required in assembly of Leishmania flagellum. Molecula...

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32
Gene Expression Changes in Medical Workers Exposed to Radiation

... 259�268. 2004. CrossRef, PubMed12. Bonner, W. M. Low-dose radiation: Threshold, bystander effects and adaptive responses. Proc. Natl. Acad. ... ...

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33
Expression of Genes Encoding Chromatin Regulatory Factors in Developing Rhesus Monkey Oocytes and Preimplantation Stage ...

... 112:113�122. Forlani, S., C. Bonnerot, S. Capgras, and J. F. Nicolas. Relief of a repressed ... family of chromatin remodeling factors related to Williams syndrome transcription factor. Proc Nat Acad Sci ...

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34
Dr

Cancer Research Carcinogenesis Cancer Cell Cell EMBO J. Genes and Development In Vitro Journal of Cell Biology Journal of Virology Molecular Cell Molecular and Cellular Biology Nature Nature Genetics Nature Medicine Oncogene Proc. Natl. Acad.

Cancer.gov

36
Characterization of Blue-light and Developmental Regulation of the Photolyase gene phr1 in Trichoderma harzianum

... dependent peroxidase production in the white-rot basidiomycete Phanerochaete chrysosporium. Proc. Natl. Acad. Sci. USA 89:5586� ... ...

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37
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 6547�6551, June 1996

. Theor. Biol. 7, 17�52. 5. Dawkins, R. (1976) The Selfish Gene. (Oxford University Press, Oxford), p. 96 for review October 1, 1995) ABSTRACT A ``green beard'' refers to a gene, or group of genes, that is able of perception and com- plex behavioral responses. However, many simple mechanisms for genes to ...

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38
Proc. Natl. Acad. Sci. USA Vol. 85, pp. 8391-8394, November 1988

differences in the DNA methyl- ation patterns of genes from different sources of DNA. We treated JAR (the cell of surface antigen genes in L cells. The role of DNA methylation in gene regulation is still unclear (1). DNA. DNA methylation patterns of the Leu-2 gene in JAR cells, untreated and at various times after ...

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39
A Dynamical Model Reveals Gene Colocalizations in Nucleus Jing Kang1,2

1, which co-regulates many of the partners. Just as distal regulatory elements affect gene developed in the previous subsection. Colocalization moment and ratio between genes To compare E (2005) Gene regulatory networks for development. Proc Natl Acad Sci U S A 102: 4936-4942. 10

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40
Association of Norepinephrine Transporter Gene with Methylphenidate Response.
2004-09-01

Objective: This study aimed to explore the association between alleles of the norepinephrine transporter gene and the methylphenidate response. Method: Chinese Han youths with attention-deficit/hyperactivity disorder recruited in the Outpatient Department of the Institute of Mental Health from 2001 to 2004 were treated with methylphenidate in doses of 0.45 to 0.60 mg/kg per ...

ERIC Educational Resources Information Center

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41
A new genetic disorder in mitochondrial fatty acid beta-oxidation: ACAD9 deficiency.
2007-06-04

The acyl-CoA dehydrogenases are a family of multimeric flavoenzymes that catalyze the alpha,beta -dehydrogenation of acyl-CoA esters in fatty acid beta -oxidation and amino acid catabolism. Genetic defects have been identified in most of the acyl-CoA dehydrogenases in humans. Acyl-CoA dehydrogenase 9 (ACAD9) is a recently identified acyl-CoA dehydrogenase that demonstrates ...

PubMed

42
A New Genetic Disorder in Mitochondrial Fatty Acid ?-Oxidation: ACAD9 Deficiency
2007-07-04

The acyl-CoA dehydrogenases are a family of multimeric flavoenzymes that catalyze the ?,?-dehydrogenation of acyl-CoA esters in fatty acid ?-oxidation and amino acid catabolism. Genetic defects have been identified in most of the acyl-CoA dehydrogenases in humans. Acyl-CoA dehydrogenase 9 (ACAD9) is a recently identified acyl-CoA dehydrogenase that demonstrates maximum ...

PubMed Central

43
letters to nature 530 NATURE |VOL 415 |31 JANUARY 2002 |www.nature.com

cancer gene expression reported to date6�12 allow for patient-tailored therapy strategies. Here we used�ned a gene expression signature associated with BRCA1 germline mutations using a panel of seven tumours26. & Kucherlapati, R. The murine N-ras gene is not essential for growth and development. Proc. Natl ...

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44
an has an instinctive tendency to speak, as we see in the babble

of genetics and vice versa Steven Pinker Figure 1 Genes and speech: a cartoonist's view of a `language gene be thought of as the decade of the gene and thedawnofcognitivegenetics. s Steven Pinker is in the Department). 8. Vargha-Khadem, F. et al. Proc. Natl Acad. Sci. USA 92, 930�933 (1995). 9. Pinker, S. Words

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45
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 5049�5054, April 1999

-stranded RNA specifically disrupts gene expression during planarian regeneration ALEJANDRO SA�NCHEZ ALVARADO that introduction of double-stranded RNA selectively abrogates gene function in planarians, a classic model of regeneration. The ability to eliminate gene function in a regenerating organism such as the planarian overcomes

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46
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 13404�13409, November 1996

expression of the cold-regulated Arabidopsis thaliana COR15a gene affects both chloroplast and protoplast freezing tolerance (cold acclimation COR genes cryoprotective proteins) NANCY N. ARTUS*, MATSUO UEMURA acclimation in plants is associated with the expression of COR (cold-regulated) genes that encode polypeptides

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47
Proc. Natl. Acad. Sci. USA Vol. 81, pp. 2431-2434, April 1984

of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes (insertions by Gerald R. Fink, December 16, 1983 ABSTRACT Five Ty insertion mutations were isolated at the LYS2 locus region ofLYS2 and one is within the structural gene. Three of these Ty elements have been cloned

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48
Proc. Nati. Acad. Sci. USA Vol. 91, pp. 5833-5837, June 1994

the hypothesis thatDNA methylation prevents the amplification of the TROPI gene by treating JAR choriocarcinoma Trop-2, and we have previously shown that DNA methylation can prevent gene transfection from preparations tested, whether the original cellular source expresses the gene or not (10). DNA methylation can

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49
Michael Jackson, Sidi Chen, and Ben Krinsky Manyaun Long Lab

(Spx) that recently originated in Drosophila, particularly the Drosophila melanogaster gene (Wang, W in the Drosophila melanogaster gene. Wang, W.F.G.) Part 2 The second aim of the research is to use experimental, and Manyuan Long Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster Proc Natl Acad ...

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50
Interspecies comparison of a gene pair with partially redundant function: the rst and kirre genes in D. virilis and

with sevenless is conserved between Drosophila virilis and Drosophila melanogaster. Proc. Natl. Acad. Sci. 90 genes in the Drosophila melanogaster species subgroup. Mol. Biol. Evol. 18:801 811. 24 #12;Pearson WR (1990 transcription factors from Drosophila melanogaster and Drosophila virilis. Nucleic Acids Res. 27:510 516

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51
Embryonic enhancers in the dpp disk region regulate a second round of Dpp signaling from the dorsal ectoderm to the mesoderm that represses

DEMETER DNA Glycosylase Establishes MEDEA Polycomb Gene Self-Imprinting by Allele.1016/j.cell.2005.12.034 SUMMARY MEDEA (MEA) is an Arabidopsis Polycomb group gene that is imprinted of DEMETER is neces- sary for transcriptional activation of the imprinted MEDEA gene. Proc. Natl. Acad. Sci

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Evidence that variation in the oligodendrocyte lineage transcription factor 2 (OLIG2) gene is associated with psychosis in Alzheimer's disease.
2009-05-27

Psychotic symptoms are common in individuals with Alzheimer's disease (AD), and define a phenotype associated with more rapid cognitive and functional decline. Evidence suggests that psychotic symptoms may be influenced by genetic factors, and recent studies in schizophrenia, bipolar affective disorder (BPAD) and Alzheimer's disease with psychosis (AD+P) suggest that psychosis susceptibility or ...

PubMed

53
Virulence 1:5, 402-403; September/October 2010; � 2010 Landes Bioscience ArticLe Addendum

adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. Proc Natl Acad Sci USA 2006 communication system called quorum sensing (QS).1 The QS sys- tem comprises a few chromosomal genes, some sys- tem which pick up the signal from extra- cellular space and forward it to the genes responsible

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54
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 7197�7202, June 1998

acid; IAA, indole-3- acetic acid; GUS, -glucuronidase; NPA, naphthylphthalamic acid. �To whom reprint). Plants harboring the SAUR-GUS and P. sativum pIAA4-GUS reporter genes were the gifts of P. Green (Michigan State Univ.) and A. Theologis (Plant Gene Expression Center), respectively. The 35S-GUS reporter

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55
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 2844�2849, March 1998

by the genes ahr-1 and aha-1, respectively. The corresponding proteins, AHR-1 and AHA-1, share biochemical and AHA-1 interact to bind DNA fragments containing the mammalian xenobiotic response element-3260. �See Note Added in Proof. 2844 #12;ing genes ahr-1 (AHR-related protein) and aha-1 (AHR- associated

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Proc. Natl. Acad. Sci. USA Vol. 94, pp. 11563�11566, October 1997

-deficient mouse model for hemophilia B gene therapy LILI WANG*, MONICA ZOPPE`*, TILMAN M. HACKENG�, JOHN H-deficient mice provide a useful animal model for gene therapy studies of hemophilia B. Hemophilia B (Christmas and is clinically indistinguishable from classic hemo- philia A due to factor VIII deficiency (3, 4). Hemophilia B

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57
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 7534�7539, July 1996

harboring an ATP2 gene deletion; BHT, butylated hydroxytoluene; coq3 , yeast mutant harboring a COQ3 gene, superox- ide dismutase. *To whom reprint requests should be addressed. 7534 #12;(BHT), hydrogen peroxide, vitamin E, or BHT were added to the cell suspensions prior to the addition of 82 M linolenic acid

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Proc. Nati. Acad. Sci. USA Vol. 85, pp. 3546-3550, May 1988

exclusion/transgenic mice/fluorescence-activated cell sorting) ALAN M. STALL*, FRANS G. M. KROESEt, F, December 28, 1987 ABSTRACT Transgenic mice carrying immunoglobulin genes coding for it heavy chain and K here that individual cells from transgenic mice carrying a functionally rearranged la heavy chain gene

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59
Proc. Nati Acad. Sci. USA Vol. 80, pp. 4030-4034, July 1983

the expression, in different Escherichia coli gin (ntr) mutants, of fusions (constructed in vitro) of the nif of the K. pneumoniae nifH::lacZ fusion requires the glnF (ntrA) gene prod- uct in addition to the K. pneumoniae nifA gene product, indicating that regulation of the K. pneumoniae'nifgenes is more closely in

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60
Genetics as a Tool for Studying Gene Structure Author(s): Sterling Emerson

the production of the killer substance in Paramecium as reported by Sonneborn ('43a, '43b), but from of Paramecium aurelia. Proc. Nat. Acad. Sci. 29:329-338. (1943b). Gene and cytoplasm. II. The bearing of determination and inheri- tance of characters in Paramecium a,irelia on the problems of cytoplasmic inheritance

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61
Gene Expression Profiling Following In Utero Exposure to Phthalate Esters Reveals New Gene Targets in the Etiology of ...

... De Meyts, and N. E. Skakkebaek. Are male reproductive disorders a common entity? The testicular dysgenesis syndrome. Ann N Y Acad Sci 2001. 948:90�99. PubMed, CSASkakkebaek, N. E. Testicular dysgenesis ......

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62
Elusive Origins of the Extra Genes in Aspergillus oryzae Nora Khaldi, Kenneth H. Wolfe*

and recombination in the aflatoxin-producing fungus Aspergillus flavus. Proc Natl Acad Sci U S A 95: 388�393. 25Elusive Origins of the Extra Genes in Aspergillus oryzae Nora Khaldi, Kenneth H. Wolfe* Smurfit Institute of Genetics, Trinity College, Dublin, Ireland Abstract The genome sequence of Aspergillus oryzae

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ESEfinder: a Web resource to identify exonic splicing enhancers Luca Cartegni, Jinhua Wang, Zhengwei Zhu, Michael Q. Zhang, Adrian R. Krainer

an autosomal recessive form of immunodeficiency with hyper IgM. Proc Natl Acad Sci U S A, 2001. 98(22): p in the fibrillin-1 gene of a Marfan syndrome patient induces NMD and disrupts an exonic splicing enhancer. Genes

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64
BioMed Central Page 1 of 11

(Wilms tumor 1) gene encodes a zinc finger transcription factor that modulates the expression of sev-like growth factor II [36], IGF1 receptor [36] and AR [37]. In Wilms tumor, different point mutations have for the Wilms tumor gene prod- uct, WT1. Proc Natl Acad Sci 1993, 90(19):8896-900. 36. Werner H, Roberts CT Jr

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65
Diversity and dispersal of a ubiquitous protein family: acyl-CoA dehydrogenases
2009-09-01

Acyl-CoA dehydrogenases (ACADs), which are key enzymes in fatty acid and amino acid catabolism, form a large, pan-taxonomic protein family with at least 13 distinct subfamilies. Yet most reported ACAD members have no subfamily assigned, and little is known about the taxonomic distribution and evolution of the subfamilies. In completely sequenced genomes ...

PubMed Central

66
Relative Contributions of Germline Gene Variation and Somatic Mutation to Immunoglobulin Diversity

Relative Contributions of Germline Gene Variation and Somatic Mutation to Immunoglobulin Diversity gene variation and somatic mutation to immunoglobulin diversity were studied by comparing germline gene of germline mutations that occurred in the past and have been stored in an apparently large ...

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Variation of Mitochondrial Control Region Sequences in Three Crane Species, the Red-Crowned Crane Grus japonensis, the ...

... analyzed ranges from 1072 bp in the dunlin Calidris alpina to 1240 bp in the greenfinch Carduelis chloris ( ... in a long-distance migrant shorebird, the Dunlin (Calidris alpina). Proc Natl Acad Sci USA 90...

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Supporting Information Speller et al. 10.1073/pnas.0909724107

) Mitochondrial DNA variation within and among wild turkey (Meleagris gallopavo) subspecies. Trans Nebr Acad Sci) as the outgroup. Meleagris gallopavo represent domestic turkey haplotypes obtained from GenBank, identified only coprolites from the Turkey Pen Ruins site (Table S2), and 10 wild M. g. gallopavo skin specimens from

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SPECIAL ISSUE REVIEWS-A PEER REVIEWED FORUM Integration of Diverse Inputs in the Regulation

, will be important for understanding FOXO's role in human longevity and aging. DAF-16 May Receive Signals From, Schreiber S, Nebel A. 2009. Association of FOXO3A variation with human longevity confirmed in German, Curb JD. 2008. FOXO3A genotype is strongly associated with human longevity. Proc Natl Acad Sci USA 105

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Response of C3 and C4 plants to middle-Holocene climatic variation near the prairie�forest ecotone

) Science 241, 1043�1052. 21. Bartlein, P. J. & Whitlock, C. (1993) in Elk Lake, Minnesota: Evidence. Irish Acad. B 101, 47�64. 50. Almquist-Jacobson, H., Almendinger, J. E. & Hobbie, S. (1992) Q. Res. 38

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MiniReview Photoactivated perylenequinone toxins in fungal

.I., Taylor, J.W., 1998. Cryptic speciation and recombination in the aflatoxin-producing fungus Aspergillus flavus. Proc. Natl. Acad. Sci. USA 95, 388�393. Giraud, T., Fortini, D., Levis, C., Leroux, P., Brygoo, Y., 2001. Aspergillus bombycis, a new aflatoxigenic species and genetic variation in its sibling species, A

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72
Equivalent Survival and Different Development Rates in Reciprocal Apache Trout � Rainbow Trout Hybrids

... between Apache (Salmo apache) and Rainbow Trout (Salmo gairdneri). J. Ariz.-Nev. Acad. Sci 20:63�69. Robison, B. D., P. A. Wheeler, and G. H. Thorgaard. 1999. Variation in development rate among clonal lin...

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COIMMU-468; NO OF PAGES 6 Self/nonself discrimination at the basis of chordate evolution

a NUMONICS Model 1224 electronic digitizer. It was necessary to perform a natural logarithm transformation. Acad. Sci. USA 78: 4435-4439. Godoy-Herrera, R., Burnet, B., Connolly, K., and Gogarty, R. (1984., Burnet, B., and Connolly, K. J. (1983). Organisation and patterns of inter- and intra-specific variation

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74
have much smaller mtDNAs (i.e. animals). Species that exhibit

strongly depends on mitochondrial integrity4, the maternally inherited mitochondria have very large. In a species where mtDNA inheritance would first be maternal, one would observe a loss of fertility in some inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proc. Natl. Acad. Sci. U. S. A

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75
Why species exist as separate entities and how they form is a vibrant topic in evolutionary biology. It has long been

of self-incompatibility (S) gene from Papaver rhoeas L. tions. Genetics 24: 538�552. Proc. Natl. Acad. Sci and interposing extracts from pollen coatings of theet al. 1995; Xue et al. 1996), and the field poppy Papaver same or different specificities between the stripped pol-rhoeas (Foote et al. 1994) has revealed

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Vol. 8, 35-45, January 1997 Cell Growth & Differentiation 35 Constitutive Expression of Full-Length c-Myb Transforms

-Staal, F. Differential expression of the amy gene in human hematopoietic cells. Proc. NatI. Acad. Sci. USA in culture, whereas E26 causes erythroblastosis in vivo and transforms hematopoietic progenitors of erythroid of hematopoietic development: (a) ele- vated expression of c-Myb occurs in normal immature cells of hematopoietic

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The cusp of evolution and development: a model of cichlid tooth shape diversity

and morphogenetic models to explain the ``evolvability'' of cusps in mammalian evolution. The models can accurately. A gene network model accounting for development and evolution of mammalian teeth. Proc. Natl. Acad. SciThe cusp of evolution and development: a model of cichlid tooth shape diversity J. T. Streelman

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78
The F7 Gene and Clotting Factor VII Levels: Dissection of a Human Quantitative Trait Locus

... VII, a vitamin K-dependent protein participating in blood coagulation. Proc. Natl. Acad. Sci. USA 84(15):5158� ... factor and factor VII: Additional pathway for initiating blood coagulation. Proc. Natl. Ac...

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79
TassDB: a database of alternative tandem splice sites

. Proc. Natl Acad. Sci. USA, 100, 189�192. 4. Ule,J., Ule,A., Spencer,J., Williams,A., Hu,J.S., Cline for the study of the expression regulation of human gene products. Nucleic Acids Res., 33, 4276�4284. 31. Holste,D

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80
SEX-LINKED HYBRID STERILITY IN A BUTTERFLY

... rates of silent substitutions between autosome-linked and sex chromosome-linked genes. Proc. Jpn. Acad. Ser. B-Phys. and Biol. Sci 63:327�331. CrossRefMuller, H. J. 1940. Bearing of the Drosophila work on ...

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81
Proliminaqy Re2oi-t on itariiie Dtolog Study of Onot,or: Atoll, Gilbert Iu!.alds

to be important as functional neurons and glia, as sources of signals for migrating commissural growth cones., Yazdanbakhsh, K. and Levine, M. (1992a). dorsal-twist interactions establish snail expression binding of snail protein to the single- mined gene. Proc. Natl. Acad. Sci. USA 89, 3414-3418. Kosman, D

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82
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 15843�15848, December 1998

�23), and B. napus is a amphidiploid hybrid of Brassica rapa (A genome) and Brassica oleracea (C genome) (24 deletions of a pathogen-resistance gene in Brassica and Arabidopsis MURRAY R. GRANT*, JOHN M. MCDOWELL in Brassica napus to determine the ancestral state of the RPM1 locus. We cloned two B. napus RPM1 homologs

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83
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 7388�7393, July 1997

trinucleotide repeat in the 3 untranslated region of myotonic dystrophy protein kinase transcripts results dystrophy protein kinase, induces the dominantly inherited neuromuscular disorder myotonic dystrophy (DM a loss of gene function. Myotonic dystrophy (DM), an autosomal dominant neuromus- cular disorder, is due

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84
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 5955�5960, May 1997

expansin gene is fruit-specific and ripening-regulated JOCELYN K. C. ROSE, HOWARD H. LEE, AND ALAN B and is specifically expressed in ripening fruit, a developmental period when growth has ceased but when selective in ripening melons and strawberries, suggesting that they are a common feature of fruit undergoing rapid

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85
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 5478�5482, May 1997

, summed across sites). To test the compatibility of genealogies across loci, we pooled the data from), FIG. 1. Genealogies from fragments of five nuclear genes for 17 isolates of C. immitis (data genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis (population genetics

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86
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 14185�14189, December 1997

in the Mexican axolotl Ambystoma mexicanum. In this species, a major gene change has been hypothesized and the obligate metamorph A. tigrinum tigri- num (21). Specifically, an F1 hybrid metamorph (A. mexica- num A. t. tigrinum) was crossed to an axolotl, and approx- imately equal proportions of metamorphs and paedomorphs

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87
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 12473�12478, November 1997

and peptide aptamers that discriminate between closely related allelic variants. The protein relationships of proteins and peptide aptamers from library screens that can illuminate the function of genes and alleles, or disruption by a peptide aptamer (19)] gives a negative output [white color on X-Gal, growth on 5-fluoroorotic

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88
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 1183�1188, February 1997

gradient analysis. Typical sucrose gradient profile of random sequence DNA selected with 0.1 mol of histone and nucleosome positioning of genomic DNA (chromatin gene regulation transcriptional activation) P. T. LOWARY of this study were to assess the extent to which bulk genomic DNA sequences contribute to their own packaging

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89
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 6886-6891, July 1996

/structure/evolution) DAVID S. WILSON*, GUOJUN SHENG, SUSIE JUN, AND CLAUDE DESPLAN Howard Hughes Medical Institute Biology (Wiley, New York). 17. Wilson, D., Sheng, G., Lecuit, T., Dostatni, N. & Desplan, C. (1993) Genes

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90
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 15491�15496, December 1996

(firefly luciferase luminescence imaging circadian rhythm gene expression) ANDREW J. MILLAR* AND STEVE A following a light pulse. The transient induction is followed by several cycles of a circadian rhythm. Seedlings transferred to continuous light are known to exhibit a robust circadian rhythm of CAB expression

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91
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 13837�13842, November 1996

(DEAD-box proteins CCHC zinc fingers glycine-rich repeats gene duplications chicken antibodies) M. E germ-line RNA helicases (GLHs) that contain CCHC zinc fingers of the type found in the RNA, including vasa, in that its predicted product contains four retroviral-like zinc fingers (18). We have

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92
Proc. Natl. Acad. Sci. USA Vol. 84, pp. 5177-5181, August 1987

shocked E. coli cells. The cells were lysed, and their proteins were resolved by two-dimensional gel,000Drosophila heat shock protein (hsp83). In E. coli the protein homologous to hsp83 is a heat shock protein. coli chromosome. The htpG gene appears to be a newly identified locus. The isolation of an E. coli

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93
Proc. Natl. Acad. Sci. USA Vol. 83, pp. 256-260, January 1986

virus/DNA-binding proteins/nuclear run-off transcription) PAUL J. GODOWSKI AND DAVID M. KNIPE Department regulated during a lytic infection. The regulation of ICP4 gene transcription requires the fi protein ICP8-5). Translation ofa mRNAs yields the a proteins, infected cell polypeptides (ICPs) 0, 4, 22, 27, and 47

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94
Proc. Nati. Acad. Sci. USA Vol. 83, pp. 3422-3426, May 1986

by Leonard A. Herzenberg, December 30, 1985 ABSTRACT We recently isolated the gene and a cDNA clone library with the Lyt-2 cDNA clone, we isolated two classes of cDNA clones, a and a', which differ by 31- membrane exon, and two cytoplasmic exons. The a' cDNA clones lack the first of the two cytoplasmic exons

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95
Proc. Nati. Acad. Sci. USA Vol. 82, pp. 5841-5845, September 1985

of nodulation genes between Rhizobium meliloti and a slow-growing Rhizobium strain that nodulates a nonlegume is a slow-growing strain of Rhizobium isolated fromParasponia nodules. Strain RP501 also nodulates conservation between nodulation loci in fast- and slow-growing Rhizobium strains. We have also shown structural

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96
Pour obtenir le grade de DOCTEUR DE L'UNIVERSITE JOSEPH FOURIER-GRENOBLE 1

). Absorbance was measured at a wavelength of 340 nm with a Perkin-Elmer Lambda-3 spectrophotometer. RESULTS CHO of the product of a human immune interferon cDNA gene in Chinese hamster ovary cells. Proc Natl Acad Sci USA 80

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97
Placental Endocrine Disruption Induced by Cadmium: Effects on P450 Cholesterol Side-Chain Cleavage and ...

... Voutilainen, T. K. Mohandas, and W. L. Miller. Human cholesterol side-chain cleavage enzyme, P450scc: cDNA cloning, assignment of the gene to chromosome 15, and expression in the placenta. Proc Natl Acad ...

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98
Pax6 is a highly conserved gene that controls eye development in all species where it has been tested. In spite of this common

planarian Girardia So is expressed together with Pax6 and is required in mature photoreceptors where it might be involved in rhodopsin expression [32��], recent results indicate that planarians can regenerate eye genetic network: Sine oculis is essential for eye regeneration in planarians. Proc Natl Acad Sci

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99
NEOPLASIA Polymorphisms and haplotypes in folate-metabolizing genes and risk

C T polymorphism may influence the flux of folate toward thymidylate synthesis involving protein polymorphisms (likelihood ratio test P .01); the estimated odds ratio for the 2R allele was influenced) polymorphisms and risk of molecularly defined subtypes of childhood acute leukemia. Proc Natl Acad Sci U S A

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100
Mol. Biol. Evol. 18(7):1246�1258. 2001 2001 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038

, as will be mentioned later. Aspergillus flavus provides a third example where con- cordance of gene genealogies producing fungus Aspergillus flavus. Proc. Natl. Acad. Sci. USA 95: 388�393. Geiser, D. M., Dorner, J. W in Aspergillus flavus and Aspergillus oryzae. Fungal Genetics and Biology., in press. Giraud, T., Fortini, D

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101
Low-Dose Radiation-Induced Senescent Stromal Fibroblasts Render Nearby Breast Cancer Cells Radioresistant

... C. Wang. Cloning and sequencing of cDNA encoding human DNA topoisomerase II and localization of the gene to chromosome region 17q21-22. Proc. Natl. Acad. Sci. USA 85:7177�7181. ... ...

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102
ImPyImPyIm-C3-18F [[18F]PIPAM5

ability to upregulate the repressed gene frataxin in a cell culture mode of Friedreich's ataxia (7 transcription inhibition associated with long GAA.TTC repeats in Friedreich's ataxia. Proc Natl Acad Sci U

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103
Estradiol and Incubation Temperature Modulate Regulation of Steroidogenic Factor 1 in the Developing

transient femini- zation of genotypic males (8). Temperature-dependent sex determination (TSD) occurs in all sexual development after insertional disruption of the mouse estrogen receptor gene. Proc Natl Acad Sci-term androgen treatment on sexually dimorphic estrogen-inducible progesterone receptor mRNA levels

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104
Differential Actions of Metyrapone on the Fetal Pituitary-Adrenal Axis in the Sheep Fetus in Late Gestation1

... Voutilainen, T. K. Mohandas, and W. L. Miller. Human cholesterol side-chain cleavage enzyme, P450scc: cDNA cloning, assignment of the gene to chromosome 15, and expression in the placenta. Proc Natl Acad ...

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105
Determination of Cancer Risk Associated with Germ Line BRCA1 Missense Variants by Functional Analysis

. Understanding missense mutations in the BRCA1 gene: an evolutionary approach. Proc Natl Acad Sci U S A 2003 analysis of BRCA1 C-terminal missense mutations identified in breast and ovarian cancer families. Hum MolDetermination of Cancer Risk Associated with Germ Line BRCA1 Missense Variants by Functional

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106
DOI: 10.1126/science.1147710 , 772 (2007);318Science

metamorphic-failure species (male, A. mexicanum from Indiana Axolotl Colony). Two F1 male hybrids were of paedomorphosis in the axolotl, Ambystoma mexicanum: a test of the single gene hypothesis. J. Hered., 86, 441: paedomorphosis in the Mexican axolotl. Proc. Natl. Acad. Sci. U.S.A., 94, 14185�14189. WAGNERWAGNER, RR. LL

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107
Cytonuclear conflict in interpopulation hybrids: the role of RNA polymerase in mtDNA transcription and replication

of mitochondrial DNA copy number in P0 (parental), F1 and F2 (interpopulation hybrids) and Bm (maternal) and Bp. Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proc. Natl. Acad. One potential mechanism for hybrid breakdown involves interactions between nuclear and mitochondrial

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108
Associations for the reciprocal and mutual sharing of advantages and disadvantages

amount of interferon- produced, but the ratio of interferon- to interleukin 10. Funding: The Wellcome: The Wellcome Trust, Leukaemia Research Fund, Kay Kendall Leukaemia Fund, British Heart Foundation, Medical of the stem cell leukaemia (SCL) gene:A tale of two fishes. Proc Natl Acad Sci 98, 6747-6752. Sanchez, M

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109
Apical Ectodermal Ridge-Dependent Expression of the Chick 67 kDa Laminin Binding Protein Gene (cLbp) in Developing Limb ...

... sequence from the laminin A chain that stimulates metastasis and collagenase IV production. Proc Natl Acad Sci ... of a new ligand binding domain. Clin Exp Metastasis 13:357�372. CrossRef, PubMed, CSALand...

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110
Ann. N.Y. Acad. Sci. ISSN 0077-8923 ANNALS OF THE NEW YORK ACADEMY OF SCIENCES

. In this context, I postulate a human "genetic axis of evil": a set of tissues--brain, testis, prostate, placenta, as well as diverse pleiotropic effects on development.25�27 Intellectual disability. Large brain size, affecting genes involved in development of the human social brain.77,78 At least in principle, the human

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111
Ann. N.Y. Acad. Sci. 961: 164�167 (2002). � 2002 New York Academy of Sciences. Molecular Signaling

in the laboratory from combinations of engineered ECMs (scaffolds), cells, and biolog- ically active molecules. #12;165 advances in tissue, matrix, growth factor, stem cell, and developmental biology. Specific challenges continuous molecular bridges between cell physiology, signal transduction, and gene expression. For a cell

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112
Aberrant Alternative Splicing of Thyroid Hormone Receptor in a TSH-Secreting Pituitary Tumor Is

1997 Altered expression of the WT1 Wilms tumor suppressor gene in human breast cancer. Proc Natl AcadAberrant Alternative Splicing of Thyroid Hormone Receptor in a TSH-Secreting Pituitary Tumor.Q.Z.), Cold Spring Harbor, New York 11724 Patients with TSH-secreting pituitary tumors (TSHomas) have high

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113
A Premature Increase in Circulating Cortisol Suppresses Expression of 11β Hydroxysteroid Dehydrogenase Type 2 Messenger ...

... Voutilainen, T. K. Mohandas, and W. L. Miller. Human cholesterol side chain cleavage enzyme, P450scc: cDNA cloning, assignment of the gene to chromosome 15 and expression in the placenta. Proc Natl Acad ....

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114
From gene expressions to genetic networks
2009-03-01

A method based on the principle of entropy maximization is used to identify the gene interaction network with the highest probability of giving rise to experimentally observed transcript profiles [1]. In its simplest form, the method yields the pairwise gene interaction network, but it can also be extended to deduce higher order correlations. Analysis of ...

NASA Astrophysics Data System (ADS)

115
Small Variations in Genes Can Determine Risk of Developing Breast Cancer

A woman's risk of developing breast cancer is due in part to a group of very small variations in genes which code for a cell's estrogen receptors.

Cancer.gov

116
Earlier Diagnosis

... include proteins in blood or spinal fluid, genetic variations (mutations) or brain changes detectable by imaging. Catalyst ... profiling Scientists have identified three genes with rare variations that cause Alzheimer's and several genes that increase ...

MedlinePLUS

117
Cell, Vol. 120, 613�622, March 11, 2005, Copyright �2005 by Elsevier Inc. DOI 10.1016/j.cell.2005.02.007 Plant Nuclear RNA Polymerase IV Mediates

RNA and miRNA Detection methyltransferases in de novo DNA methylation and gene silenc- ing. Curr. Biol. 12. (2002). RNA-directed DNA methylation in Arabidopsis. Genes Dev. 11, 2383�2395. Proc. Natl. Acad. Sci.02.007 Plant Nuclear RNA Polymerase IV Mediates siRNA and DNA Methylation-Dependent Heterochromatin Formation

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118
Genetic Disorders

A genetic disorder is a disease caused by a different form of a gene called a variation, or an alteration of a gene called a mutation. Many diseases have ...

MedlinePLUS

119
Estrogen Receptor Gene Variation and Disease.
2004-01-01

Methods for determining the presence of polymorphisms in estrogen receptor genes and assessing an individual's risk for developing a condition are provided herein.

National Technical Information Service (NTIS)

120
Functional analysis of matrix proteins expressed from cloned genes of measles virus variants that cause subacute sclerosing panencephalitis reveals a common defect in nucleocapsid binding.
1993-04-01

We have developed an in vitro nucleocapsid-binding assay for studying the function of the matrix (M) protein of measles virus (MV) (A. Hirano, A. H. Wang, A. F. Gombart, and T. C. Wong, Proc. Natl. Acad. Sci. USA, 89:8745-8749, 1992). In this communication we show that the M proteins of three MV strains that cause acute infection (Nagahata, Edmonston, and YN) bind efficiently ...

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121
Detection of expansin proteins and activity during tomato fruit ontogeny.
2000-08-01

Expansins are plant proteins that have the capacity to induce extension in isolated cell walls and are thought to mediate pH-dependent cell expansion. J.K.C. Rose, H.H. Lee, and A.B. Bennett ([1997] Proc Natl Acad Sci USA 94: 5955-5960) reported the identification of an expansin gene (LeExp1) that is specifically expressed in ripening tomato (Lycopersicon ...

PubMed

122
Detection of Expansin Proteins and Activity during Tomato Fruit Ontogeny1
2000-08-01

Expansins are plant proteins that have the capacity to induce extension in isolated cell walls and are thought to mediate pH-dependent cell expansion. J.K.C. Rose, H.H. Lee, and A.B. Bennett ([1997] Proc Natl Acad Sci USA 94: 5955�5960) reported the identification of an expansin gene (LeExp1) that is specifically expressed in ripening tomato ...

PubMed Central

123
ON THE FORMATION OF THE SUPERFLUID STATE IN THE ATOMIC NUCLEUS
1958-12-01

The mathematical methods and the variation principle (the generalized Fock Method) suggested by N. N. Bogolyubov et al. (New Methods in the Theory of Superconductivity, Pub. of the Acad. of Sciences U.S.S.R., 1958) were used in studies of the superfluid state in the atomic- nucleus. The results confirm the previous assumption that the formation ...

Energy Citations Database

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