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GenoBase integrates genomic information from many existing databases, offering convenient access to the curated data. This document is the first part of a two-part tutorial on how to use GenoBase for accessing integrated genomic data.

K2 Kleisli and GUS: Experiments in Integrated Access to Genomic Data Sources Susan B. Davidson over multiple external data sources and software systems; and a data warehouse called GUS which with the warehousing approach before describing a particular warehouse called GUS the Genomics Uni ed Schema. GUS forms

In this paper we review the impact that the availability of the Schistosoma mansoni genome sequence and annotation has had on schistosomiasis research. Easy access to the genomic information is important and several types of data are currently being integrated, such as proteomics, microarray and polymorphic loci. ...

Sinnott,R.O. Future Generation of Computer Systems, Special Edition on Life Science Grids for Biomedicine and Bioinformatics

The pharmaceutical industry has demonstrated success in integrating of chemogenomic knowledge into predictive toxicological models, due in part to industry's access to large amounts of proprietary and commercial reference genomic data sets....

With several plant genomes sequenced, the power of comparative genome analysis can now be applied. However, genome-scale cross-species analyses are limited by the effort for data integration. To develop an integrated cross-species plant genome resource, we maintain ...

... Title : BRCA2 and Genome Integrity. ... The importance of BRCA2 in maintaining genome integrity in human cells is not very clear. ...

... Title : BRCA2 and Genome Integrity. ... The importance of BRCA2 in maintaining genome integrity of human somatic cells is not very clear. ...

Part of the Mouse Genome Informatics program (last reported on in the NSDL Scout Report for the Life Sciences on March 19, 2004) at the Jackson Laboratory, this website presents The Mouse Genome Sequence (MGS) project. MGS is designed "to integrate emerging mouse genomic sequence data with the genetic and ...

Megx.net is a database and portal that provides integrated access to georeferenced marker genes, environment data and marine genome and metagenome projects for microbial ecological genomics. All data are stored in the Microbial Ecological Genomics DataBase (MegDB), which is subdivided to hold ...

BackgroundThe SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems concept that leverages clustering between genomes and other clues to accurately and efficiently annotate microbial genomes. The backend is ...

... Thus, maintaining genomic integrity is vital to the normal growth of cells and to human health. Maintenance of genome integrity during S phase ...

Access to the article is free, however registration and sign-in are required: Retroviruses ensure that their reverse-transcribed RNA genomes are integrated into the DNA of host cells, a characteristic that has prompted their use as gene-therapy vectors. In a Perspective, Trono discusses new findings (Wu et al.) that describe how two ...

Over the last decade, and especially after the advent of fluorescent in situ hybridization imaging and chromosome conformation capture methods, the availability of experimental data on genome three-dimensional organization has dramatically increased. We now have access to unprecedented details of how genomes organize within the ...

The catfish genome database, cBARBEL (abbreviated from catfish Breeder And Researcher Bioinformatics Entry Location) is an online open-access database for genome biology of ictalurid catfish (Ictalurus spp.). It serves as a comprehensive, integrative platform for all aspects of catfish genetics, ...

Magnifying Genomes (MaGe) is a microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation projects. Our system allows one to initiate the annotation of a genome at the early stage of the ...

Songbirds share some essential traits but are extraordinarily diverse, allowing comparative analyses aimed at identifying specific genotype�phenotype associations. This diversity encompasses traits like vocal communication and complex social behaviors that are of great interest to humans, but that are not well represented in other accessible research organisms. Many ...

This paper provides an overview of the PUMA system which provides access to data about metabolic pathways, enzymes, compounds, organisms, encoded activity, and assay condition information for enzymes in particular organisms and multiple sequence alignments.

Gaggle Tool Creator (GTC) is a web application which provides access to public annotation, interaction, orthology, and genomic data for hundreds of organisms, and enables instant analysis of the data using many popular web-based and desktop applications.

We have used logic programming to design and implement a prototype database of genomic information for the model bacterial organism Escherichia coli. This report presents the fundamental database primitives that can be used to access and manipulate data r...

We have used logic programming to design and implement a prototype database of genomic information for the model bacterial organism Escherichia coli. This report presents the fundamental database primitives that can be used to access and manipulate data relating to the E. coli genome. The present system, combined with a tutorial ...

WormBase (http://www.wormbase.org/) is a web-accessible central data repository for information about Caenorhabditis elegans and related nematodes. The past two years have seen a significant expansion in the biological scope of WormBase, including the integration of large-scale, genome-wide data sets, the inclusion of ...

The number of databases in molecular biological fields has rapidly increased to provide a large-scale resource. Though valuable information is available, data can be difficult to access, compare and integrate due to different formats and presentations of web interfaces. This paper offers a practical guide to the integration of gene, ...

The number of databases in molecular biological fields has rapidly increased to provide a large-scale resource. Though valuable information is available, data can be difficult to access, compare and integrate due to different formats and presentations of web interfaces. This paper offers a practical guide to the integration of gene, ...

... Accession Number : ADA504601. Title : The Complete Genome Sequence of Bacillus anthracis, Ames Ancestor. Genome Announcements. ...

... Accession Number : ADA411131. Title : Automated Microfluidics for Genomics. Descriptive Note : Conference paper. Corporate ...

... Accession Number : AD0804496. Title : APPARENT GENOMIC MAPPING OF STAPHYLOCOCCUS AUREUS BY A NEW METHOD,. ...

The Genome Consortium for Active Teaching (GCAT) facilitates the use of modern genomics methods in undergraduate education. Initially focused on microarray technology, but with an eye toward diversification, GCAT is a community working to improve the education of tomorrow's life science professionals. GCAT participants have access to ...

The Genome Consortium for Active Teaching (GCAT) facilitates the use of modern genomics methods in undergraduate education. Initially focused on microarray technology, but with an eye toward diversification, GCAT is a community working to improve the education of tomorrow's life science professionals. GCAT participants have access to ...

The Genome Consortium for Active Teaching (GCAT) facilitates the use of modern genomics methods in undergraduate education. Initially focused on microarray technology, but with an eye toward diversification, GCAT is a community working to improve the education of tomorrow's life science professionals. GCAT participants have access to ...

The authors describe the rationale and initial development of a new collaborative initiative, the Genomic Applications in Practice and Prevention Network. The network convened by the Centers for Disease Control and Prevention and the National Institutes of Health includes multiple stakeholders from academia, government, health care, public health, industry and consumers. The ...

CandidaDB (http://genodb.pasteur.fr/CandidaDB) was established in 2002 to provide the first genomic database for the human fungal pathogen Candida albicans. The availability of an increasing number of fully or partially completed genome sequences of related fungal species has opened the path for comparative genomics and prompted us to ...

The authors describe the rationale and initial development of a new collaborative initiative, the Genomic Applications in Practice and Prevention Network. The network convened by the Centers for Disease Control and Prevention and the National Institutes of Health includes multiple stakeholders from academia, government, health care, public health, industry and consumers. The ...

BACs provide reliable access to specific pieces of genomic DNA that can easily be used for standard laboratory procedures including DNA sequencing and FISH mapping. BAC library resources will become much more valuable and efficient tools once the majority...

GenColors (gencolors.fli-leibniz.de) is a new web-based software/database system aimed at an improved and accelerated annotation of prokaryotic genomes considering information on related genomes and making extensive use of genome comparison. It offers a seamless integration of data from ongoing sequencing projects ...

The Soybean Genomics and Microarray Database (SGMD) attempts to provide an integrated view of the interaction of soybean with the soybean cyst nematode and contains genomic, EST and microarray data with embedded analytical tools allowing correlation of soybean ESTs with their gene expression profiles. SGMD provides analytical tools to ...

? Introduction- why it matters. ? Genome level data. ? Genomic databases. ? Modelling challenges. ? Integrating biological databases.

Research article A physical map of the papaya genome with integrated genetic map and genome sequence

With the initial completion of Human Genome Project, the post-genomic era is coming. Although the genome map of human has been decoded, the roles that each segment of sequences acts are not totally discovered. On the other hand, with the rapid expansion of sequence information, the issues of data compilation and data storage are ...

Sequence variations are being studied for a better understanding of the mechanism and development of cancer as a mutation-driven disease. The systematic sequencing of genes in tumors and technological advances in high-throughput techniques combined with efficient data acquisition methods have resulted in an explosion of available cancer genome-related data. Despite the ...

We have created a federated database for genome studies of Magnaporthe grisea, the causal agent of rice blast disease, by integrating end sequence data from BAC clones, genetic marker data and BAC contig assembly data. A library of 9216 BAC clones providing >25-fold coverage of the entire genome was end sequenced and fingerprinted ...

of BAC Libraries Comparative Sequencing to Understand the Human Genome · Annotating the Human Genome · Comparative Genome Evolution · Evolution of the Human Proteome ·...

Genomics is not only essential for students to understand biology but also provides unprecedented opportunities for undergraduate research. The goal of the Genomics Education Partnership (GEP), a collaboration between a growing number of colleges and universities around the country and the Department of Biology and Genome Center of ...