Sample records for accumulate organic matter

  1. Anthropogenic N deposition increases soil organic matter accumulation without altering its biochemical composition.

    PubMed

    Zak, Donald R; Freedman, Zachary B; Upchurch, Rima A; Steffens, Markus; Kögel-Knabner, Ingrid

    2017-02-01

    Accumulating evidence indicates that future rates of atmospheric N deposition have the potential to increase soil C storage by reducing the decay of plant litter and soil organic matter (SOM). Although the microbial mechanism underlying this response is not well understood, a decline in decay could alter the amount, as well as biochemical composition of SOM. Here, we used size-density fractionation and solid-state 13 C-NMR spectroscopy to explore the extent to which declines in microbial decay in a long-term (ca. 20 yrs.) N deposition experiment have altered the biochemical composition of forest floor, bulk mineral soil, as well as free and occluded particulate organic matter. Significant amounts of organic matter have accumulated in occluded particulate organic matter (~20%; oPOM); however, experimental N deposition had not altered the abundance of carboxyl, aryl, alkyl, or O/N-alkyl C in forest floor, bulk mineral soil, or any soil fraction. These observations suggest that biochemically equivalent organic matter has accumulated in oPOM at a greater rate under experimental N deposition, relative to the ambient treatment. Although we do not understand the process by which experimental N deposition has fostered the occlusion of organic matter by mineral soil particles, our results highlight the importance of interactions among the products of microbial decay and the chemical and physical properties of silt and clay particles that occlude organic matter from microbial attack. Because oPOM can reside in soils for decades to centuries, organic matter accumulating under future rates of anthropogenic N deposition could remain in soil for long periods of time. If temperate forest soils in the Northern Hemisphere respond like those in our experiment, then unabated deposition of anthropogenic N from the atmosphere has the potential to foster greater soil C storage, especially in fine-texture forest soils. © 2016 John Wiley & Sons Ltd.

  2. Ecogeomorphology of Spartina patens-dominated tidal marshes: Soil organic matter accumulation, marsh elevation dynamics, and disturbance

    USGS Publications Warehouse

    Cahoon, D.R.; Ford, M.A.; Hensel, P.F.; Fagherazzi, Sergio; Marani, Marco; Blum, Linda K.

    2004-01-01

    Marsh soil development and vertical accretion in Spartina patens (Aiton) Muhl.-dominated tidal marshes is largely dependent on soil organic matter accumulation from root-rhizome production and litter deposition. Yet there are few quantitative data sets on belowground production and the relationship between soil organic matter accumulation and soil elevation dynamics for this marsh type. Spartina patens marshes are subject to numerous stressors, including sea-level rise, water level manipulations (i.e., flooding and draining) by impoundments, and prescribed burning. These stressors could influence long-term marsh sustainability by their effect on root production, soil organic matter accumulation, and soil elevation dynamics. In this review, we summarize current knowledge on the interactions among vegetative production, soil organic matter accumulation and marsh elevation dynamics, or the ecogeomorphology, of Spartina patens-dominated tidal marshes. Additional studies are needed of belowground production/decomposition and soil elevation change (measured simultaneously) to better understand the links among soil organic matter accumulation, soil elevation change, and disturbance in this marsh type. From a management perspective, we need to better understand the impacts of disturbance stressors, both lethal and sub-lethal, and the interactive effect of multiple stressors on soil elevation dynamics in order to develop better management practices to safeguard marsh sustainability as sea level rises.

  3. cyclostratigraphy, sequence stratigraphy and organic matter accumulation mechanism

    NASA Astrophysics Data System (ADS)

    Cong, F.; Li, J.

    2016-12-01

    The first member of Maokou Formation of Sichuan basin is composed of well preserved carbonate ramp couplets of limestone and marlstone/shale. It acts as one of the potential shale gas source rock, and is suitable for time-series analysis. We conducted time-series analysis to identify high-frequency sequences, reconstruct high-resolution sedimentation rate, estimate detailed primary productivity for the first time in the study intervals and discuss organic matter accumulation mechanism of source rock under sequence stratigraphic framework.Using the theory of cyclostratigraphy and sequence stratigraphy, the high-frequency sequences of one outcrop profile and one drilling well are identified. Two third-order sequences and eight fourth-order sequences are distinguished on outcrop profile based on the cycle stacking patterns. For drilling well, sequence boundary and four system tracts is distinguished by "integrated prediction error filter analysis" (INPEFA) of Gamma-ray logging data, and eight fourth-order sequences is identified by 405ka long eccentricity curve in depth domain which is quantified and filtered by integrated analysis of MTM spectral analysis, evolutive harmonic analysis (EHA), evolutive average spectral misfit (eASM) and band-pass filtering. It suggests that high-frequency sequences correlate well with Milankovitch orbital signals recorded in sediments, and it is applicable to use cyclostratigraphy theory in dividing high-frequency(4-6 orders) sequence stratigraphy.High-resolution sedimentation rate is reconstructed through the study interval by tracking the highly statistically significant short eccentricity component (123ka) revealed by EHA. Based on sedimentation rate, measured TOC and density data, the burial flux, delivery flux and primary productivity of organic carbon was estimated. By integrating redox proxies, we can discuss the controls on organic matter accumulation by primary production and preservation under the high-resolution sequence

  4. Influence of salinity and organic matter on silver accumulation in Gulf toadfish (Opsanus beta).

    PubMed

    Nichols, Joel W; Brown, Stephanie; Wood, Chris M; Walsh, Patrick J; Playle, Richard C

    2006-06-30

    To help extend the freshwater based biotic ligand model for silver (Ag) into brackish and saltwater conditions, 50g Gulf toadfish (Opsanus beta) were acclimated to 2.5%, 5%, 10%, 20%, 40%, 80%, or 100% salt water and exposed for 6d to 1.0microM AgNO(3), with or without 10mg C/L organic matter. Suwannee River natural organic matter collected by reverse osmosis was used. Silver accumulation in toadfish gills and plasma decreased as salinity increased, indicating low bioavailability of AgCl complexes. Complexation of Ag by organic matter, normally important in freshwater conditions, was less important as salinity increased. Although relatively little intestinal Ag uptake was observed, both liver and bile accumulated Ag from water imbibed past the isosmotic salinity point ( approximately 1/3 salt water). Toadfish also produced intestinal carbonate pellets, minerals which did not influence Ag accumulation. Our results further stress the importance of Ag speciation, physiological mechanisms, and intestinal Ag uptake when modelling Ag uptake and toxicity beyond freshwater conditions.

  5. Dissolved organic matter reduces algal accumulation of methylmercury

    USGS Publications Warehouse

    Luengen, Allison C.; Fisher, Nicholas S.; Bergamaschi, Brian A.

    2012-01-01

    Dissolved organic matter (DOM) significantly decreased accumulation of methylmercury (MeHg) by the diatom Cyclotella meneghiniana in laboratory experiments. Live diatom cells accumulated two to four times more MeHg than dead cells, indicating that accumulation may be partially an energy-requiring process. Methylmercury enrichment in diatoms relative to ambient water was measured by a volume concentration factor (VCF). Without added DOM, the maximum VCF was 32 x 104, and the average VCF (from 10 to 72 h) over all experiments was 12.6 x 104. At very low (1.5 mg/L) added DOM, VCFs dropped by approximately half. At very high (20 mg/L) added DOM, VCFs dropped 10-fold. Presumably, MeHg was bound to a variety of reduced sulfur sites on the DOM, making it unavailable for uptake. Diatoms accumulated significantly more MeHg when exposed to transphilic DOM extracts than hydrophobic ones. However, algal lysate, a labile type of DOM created by resuspending a marine diatom in freshwater, behaved similarly to a refractory DOM isolate from San Francisco Bay. Addition of 67 μM L-cysteine resulted in the largest drop in VCFs, to 0.28 x 104. Although the DOM composition influenced the availability of MeHg to some extent, total DOM concentration was the most important factor in determining algal bioaccumulation of MeHg.

  6. Effects of Insect-Proof Net Cultivation, Rice-Duck Farming, and Organic Matter Return on Rice Dry Matter Accumulation and Nitrogen Utilization

    PubMed Central

    Liu, Xin; Xu, Guochun; Wang, Qiangsheng; Hang, Yuhao

    2017-01-01

    Insect-proof net cultivation (IPN), rice-duck farming (RD), and organic matter return (OM) are important methods to realize sustainable development of rice production. A split-plot field experiment was performed to study the effects of IPN, RD, and OM on the rice yield, dry matter accumulation and N utilization. Results showed that compared to inorganic N fertilizer (IN), wheat straw return, and biogas residue return increased the rice yield by 2.11–4.28 and 4.78–7.67%, respectively, and also improved dry matter and N accumulation after the elongation stage (EG), dry matter and N translocation, and N recovery efficiency (NRE). These results attributed to an increase in leaf SPAD values and net photosynthetic rate (Pn) after the EG. Compared to conventional rice farming (CR), RD promoted the rice yield by 1.52–3.74%, and contributed to higher the leaf photosynthesis, dry matter and N accumulation, dry matter and N translocation, and NRE. IPN decreased the intensity of sun radiation in the nets due to the coverage of the insect-proof nets, which declined the leaf Pn, dry matter accumulation and translocation, N absorption and translocation, and NRE compared to open field cultivation (OFC). The rice yield of IPN were 2.48–4.98% lower than that of OFC. Compared to the interaction between CR and IN, the interaction between RD and OM improved the rice yield by 5.26–9.33%, and increased dry matter and N accumulation after the EG, dry matter and N translocation, and NRE. These results indicated that OM, RD and the interaction between RD and OM could promote dry matter accumulation and N utilization, which was beneficial to improve the rice yield. PMID:28174589

  7. Depositional environment and organic matter accumulation of Upper Ordovician–Lower Silurian marine shale in the Upper Yangtze Platform, South China

    USGS Publications Warehouse

    Li, Yangfang; Zhang, Tongwei; Ellis, Geoffrey S.; Shao, Deyong

    2017-01-01

    The main controlling factors of organic matter accumulation in the Upper Ordovician Wufeng–Lower Silurian Longmaxi Formations are complex and remain highly controversial. This study investigates the vertical variation of total organic carbon (TOC) content as well as major and trace element concentrations of four Ordovician–Silurian transition sections from the Upper Yangtze Platform of South China to reconstruct the paleoenvironment of these deposits and to improve our understanding of those factors that have influenced organic matter accumulation in these deposits.The residual TOC content of the Wufeng Formation averages 3.2% and ranges from 0.12 to 6.0%. The overlying lower Longmaxi Formation displays higher TOC content (avg. 4.4%), followed upsection by consistent and lower values that average 1.6% in the upper Longmaxi Formation. The concentration and covariation of redox-sensitive trace elements (Mo, U and V) suggest that organic-rich intervals of the Wufeng Formation accumulated under predominantly anoxic conditions. Organic-rich horizons of the lower Longmaxi Formation were deposited under strongly anoxic to euxinic conditions, whereas organic-poor intervals of the upper Longmaxi Formation accumulated under suboxic conditions. Positive correlations between redox proxies and TOC contents suggest that organic matter accumulation was predominantly controlled by preservation. Barium excess (Baxs) values indicate high paleoproductivity throughout the entire depositional sequence, with an increase in the lower Longmaxi Formation. Increased productivity may have been induced by enhanced P recycling, as evidenced by elevated Corg/Ptot ratios. Mo–U covariation and Mo/TOC values reveal that the Wufeng Formation was deposited under extremely restricted conditions, whereas the Longmaxi Formation accumulated under moderately restricted conditions. During the Late Ordovician, the extremely restricted nature of ocean circulation on the Upper Yangtze Platform in

  8. Spectral Exploration of Calcium Accumulation in Organic Matter in Gray Desert Soil from Northwest China

    PubMed Central

    Wang, Ping; Ma, Yucui; Wang, Xihe; Jiang, Hong; Liu, Hua; Ran, Wei; Shen, Qirong

    2016-01-01

    Little attention has been paid to the accumulation of soil organic matter (SOM) in the fringes of the mid-latitude desert. In this paper, soil samples from a long-term field experiment conducted from 1990 to 2013 at a research station in Urumqi, China by different fertilizer treatments, were used to determine soil properties and soil dissolved organic matter (DOM) by chemical analysis, fluorescence excitation emission matrix (EEM) spectroscopy, and high resolution-transmission electron microscopy (HR-TEM). The binding features of DOM under the addition of Ca2+ were analyzed using a two-dimensional (2D) Fourier transform infrared (FTIR) spectrometer further to explore the response of the DOM to increasing concentrations of Ca2+. Long-term application of chemical fertilizers and goat manure increased soil organic carbon (SOC) by 1.34- and 1.86-fold, respectively, relative to the non-fertilized control (8.95g.kg-1). Compared with the control, application of chemical fertilizers and manure significantly increased the concentrations of Ca, Mg, Si, humic and fulvic acid-like substances in DOM but decreased the amounts of trivalent metals (Al and Fe) and protein-like substances. Although crystalline Al/Fe nanoparticles and amorphous or short-range-order Si/Al nanoparticles existed in all DOM samples, crystalline Ca/Si nanoparticles were predominant in the samples treated with goat manure. Although organic matter and Si-O-containing nanoparticles were involved in the binding of Ca2+ to DOM, application of chemical fertilizers weakened Ca2+ association with components of the amide II group (1510 cm-1) and Si-O linkage (1080 cm-1), whereas application of goat manure enhanced the affinity of Ca2+ for Si-O linkage. Our results suggested that the enrichment of Ca in gray desert soil possibly helps accumulate SOM by forming crystalline Ca/Si nanoparticles in addition to Ca2+ and organic matter complexes. PMID:26751962

  9. Spectral Exploration of Calcium Accumulation in Organic Matter in Gray Desert Soil from Northwest China.

    PubMed

    Wang, Ping; Ma, Yucui; Wang, Xihe; Jiang, Hong; Liu, Hua; Ran, Wei; Shen, Qirong

    2016-01-01

    Little attention has been paid to the accumulation of soil organic matter (SOM) in the fringes of the mid-latitude desert. In this paper, soil samples from a long-term field experiment conducted from 1990 to 2013 at a research station in Urumqi, China by different fertilizer treatments, were used to determine soil properties and soil dissolved organic matter (DOM) by chemical analysis, fluorescence excitation emission matrix (EEM) spectroscopy, and high resolution-transmission electron microscopy (HR-TEM). The binding features of DOM under the addition of Ca(2+) were analyzed using a two-dimensional (2D) Fourier transform infrared (FTIR) spectrometer further to explore the response of the DOM to increasing concentrations of Ca(2+). Long-term application of chemical fertilizers and goat manure increased soil organic carbon (SOC) by 1.34- and 1.86-fold, respectively, relative to the non-fertilized control (8.95 g.kg(-1)). Compared with the control, application of chemical fertilizers and manure significantly increased the concentrations of Ca, Mg, Si, humic and fulvic acid-like substances in DOM but decreased the amounts of trivalent metals (Al and Fe) and protein-like substances. Although crystalline Al/Fe nanoparticles and amorphous or short-range-order Si/Al nanoparticles existed in all DOM samples, crystalline Ca/Si nanoparticles were predominant in the samples treated with goat manure. Although organic matter and Si-O-containing nanoparticles were involved in the binding of Ca(2+) to DOM, application of chemical fertilizers weakened Ca(2+) association with components of the amide II group (1510 cm(-1)) and Si-O linkage (1080 cm(-1)), whereas application of goat manure enhanced the affinity of Ca(2+) for Si-O linkage. Our results suggested that the enrichment of Ca in gray desert soil possibly helps accumulate SOM by forming crystalline Ca/Si nanoparticles in addition to Ca(2+) and organic matter complexes.

  10. Impacts of potassium ferrate(VI) on the growth and organic matter accumulation, production, and structural changes in the cyanobacterium Microcystis aeruginosa.

    PubMed

    Liu, Shu-Yu; Xu, Jingling; Chen, Wen-Li; David, Berthold E; Wu, Minghong; Ma, Fang

    2017-04-01

    Cyanobacterial blooms generated by nutrient addition into aquatic systems pose serious risks to ecosystems and human health. Though there are established chemical, physical, and biological means of eradication, more efficient and environmentally friendly measures are desired. This study investigates the effect of potassium ferrate(VI) on the growth and intracellular and extracellular organic matter accumulations of the cyanobacterium Microcystis aeruginosa. Cultures were inoculated with three separate concentrations of potassium ferrate(VI) (3, 15, 30 mg L -1 ) and monitored by measuring chlorophyll-a (Chl-a) and intracellular/extracellular dissolved organic carbon. Results show that ferrate(VI) addition effectively removed the microalgae from the medium, as indicated by the reduction of Chl-a. Organic matter accumulation of the microalgae was also affected by ferrate(VI) treatment; fluorescence EEM spectra show details of changing intracellular dissolved organic matter (IDOM) and extracellular dissolved organic matter (EDOM). A new peak appeared in the EDOM indicating altered humic and proteinaceous compounds. This study demonstrates that ferrate(VI) is a potential treatment for the water contaminated with the toxic microalgae M. aeruginosa.

  11. Organic matter accumulation and community change at the peatland-upland interface: inferences from 14C and 210Pb dated profiles

    Treesearch

    Ilka E. Bauer; Jagtar S. Bhatti; Christopher Swanston; R. Kelman Wieder; Caroline M. Perston

    2009-01-01

    Peatland-margin habitats with organic matter accumulation of 40-150 cm make up a significant but poorly quantified portion of Canada's boreal forest region. Spanning the transition between non-wetland forest and fen proper, these ecosystems represent a zone of complex environmental and vegetation change, yet little is known about their ecological function or...

  12. Pre-biotic organic matter from comets and asteroids

    NASA Technical Reports Server (NTRS)

    Anders, Edward

    1989-01-01

    Only meteoritic fragments small enough to be gently decelerated by the atmosphere (10 to the -12th g to 10 to the -6th g) can deliver organic matter intact. The amount of such 'soft-landed' organic carbon can be estimated from data for the infall rate of meteoritic matter. At present rates, only about 0.0006 g/sq cm intact organic carbon would accumulate in 100 million years, but at the higher rates of about four billion yr ago, about 20 g/sq cm may have accumulated in the few hundred million years between the last cataclysmic impact and the beginning of life. It may have included some biologically important compounds that did not form by abiotic synthesis on earth.

  13. Accumulation of organic matter in Cretaceous oxygen-deficient depositional environments in the central Pacific Ocean

    USGS Publications Warehouse

    Dean, W.E.; Claypool, G.E.; Thide, J.

    1984-01-01

    Complete records of organic-carbon-rich Cretaceous strata were continuouslycored on the flanks of the Mid-Pacific Mountains and southern Hess Rise in the central North Pacific Ocean during DSDP Leg 62. Organic-carbon-rich laminated silicified limestones were deposited in the western Mid-Pacific Mountains during the early Aptian, a time when that region was south of the equator and considerably shallower than at present. Organic-carbon-rich, laminated limestone on southern Hess Rise overlies volcanic basement and includes 136 m of stratigraphic section of late Albian to early Cenomanian age. This limestone unit was deposited rapidly as Hess Rise was passing under the equatorial high-productivity zone and was subsiding from shallow to intermediate depths. The association of volcanogenic components with organic-carbon-rich strata on Hess Rise in the Mid-Pacific Mountains is striking and suggests that there was a coincidence of mid-plate volcanic activity and the production and accumulation of organic matter at intermediate water depths in the tropical Pacific Ocean during the middle Cretaceous. Pyrolysis assays and analyses of extractable hydrocarbons indicate that the organic matter in the limestone on Hess Rise is composed mainly of lipid-rich kerogen derived from aquatic marine organisms and bacteria. Limestones from the Mid-Pacific Mountains generally contain low ratios of pyrolytic hydrocarbons to organic carbon and low hydrogen indices, suggesting that the organic matter may contain a significant proportion of land-derived material, possibly derived from numerous volcanic islands that must have existed before the area subsided. The organic carbon in all samples analyzed is isotopically light (??13C - 24 to - 29 per mil) relative to most modern rine organic carbon, and the lightest carbon is also the most lipid-rich. There is a positive linear correlation between sulfur and organic carbon in samples from Hess Rise and from the Mid-Pacific Mountains. The slopes

  14. What is soil organic matter worth?

    PubMed

    Sparling, G P; Wheeler, D; Vesely, E-T; Schipper, L A

    2006-01-01

    The conservation and restoration of soil organic matter are often advocated because of the generally beneficial effects on soil attributes for plant growth and crop production. More recently, organic matter has become important as a terrestrial sink and store for C and N. We have attempted to derive a monetary value of soil organic matter for crop production and storage functions in three contrasting New Zealand soil orders (Gley, Melanic, and Granular Soils). Soil chemical and physical characteristics of real-life examples of three pairs of matched soils with low organic matter contents (after long-term continuous cropping for vegetables or maize) or high organic matter content (continuous pasture) were used as input data for a pasture (grass-clover) production model. The differences in pasture dry matter yields (non-irrigated) were calculated for three climate scenarios (wet, dry, and average years) and the yields converted to an equivalent weight and financial value of milk solids. We also estimated the hypothetical value of the C and N sequestered during the recovery phase of the low organic matter content soils assuming trading with C and N credits. For all three soil orders, and for the three climate scenarios, pasture dry matter yields were decreased in the soils with lower organic matter contents. The extra organic matter in the high C soils was estimated to be worth NZ$27 to NZ$150 ha(-1) yr(-1) in terms of increased milk solids production. The decreased yields from the previously cropped soils were predicted to persist for 36 to 125 yr, but with declining effect as organic matter gradually recovered, giving an accumulated loss in pastoral production worth around NZ$518 to NZ$1239 ha(-1). This was 42 to 73 times lower than the hypothetical value of the organic matter as a sequestering agent for C and N, which varied between NZ$22,963 to NZ$90,849 depending on the soil, region, discount rates, and values used for carbon and nitrogen credits.

  15. Distribution of inorganic and organic nutrients in the South Pacific Ocean - evidence for long-term accumulation of organic matter in nitrogen-depleted waters

    NASA Astrophysics Data System (ADS)

    Raimbault, P.; Garcia, N.; Cerutti, F.

    2007-08-01

    . Extensive comparison has shown that glass fiber GF/F filters efficiency collected particulate chlorophyll, while a significant fraction of POM (up to 50%) passed trough this filter and was retained by 0.2 μm Teflon membrane. The most striking feature was the large accumulation of dissolved organic matter (DOM) in the SPG relative to surrounding waters, especially dissolved organic carbon (DOC) where concentrations were at levels rarely measured in oceanic waters (>100 μmoles l-1). Due to this large pool of DOM over the whole photic layer of the SPG, integrated values followed an opposite geographical pattern than this of inorganic nutrients with a large accumulation within the centre of the SPG. While suspended particulate matter in the mixed layer had C/N ratio largely conform to Redfield stoichiometry (C/N≍6.6), marked deviations were observed in this excess DOM (C/N≍16 to 23). The existence of C-rich dissolved organic matter is recognized as a feature typical of oligotrophic waters, requiring the over consumption of carbon. Thus, in spite of strong nitrate-depletion leading to low chlorophyll biomass, the closed ecosystem of the SPG can produce a large amount of carbon. The implications of this finding are discussed, the conclusion being that, due to the lack of seasonal vertical mixing and weak lateral advection, the dissolved organic carbon biologically produced can be accumulated and stored in the photic layer for a very long period.

  16. Effect of organic matter amendment, arsenic amendment and water management regime on rice grain arsenic species.

    PubMed

    Norton, Gareth J; Adomako, Eureka E; Deacon, Claire M; Carey, Anne-Marie; Price, Adam H; Meharg, Andrew A

    2013-06-01

    Arsenic accumulation in rice grain has been identified as a major problem in some regions of Asia. A study was conducted to investigate the effect of increased organic matter in the soil on the release of arsenic into soil pore water and accumulation of arsenic species within rice grain. It was observed that high concentrations of soil arsenic and organic matter caused a reduction in plant growth and delayed flowering time. Total grain arsenic accumulation was higher in the plants grown in high soil arsenic in combination with high organic matter, with an increase in the percentage of organic arsenic species observed. The results indicate that the application of organic matter should be done with caution in paddy soils which have high soil arsenic, as this may lead to an increase in accumulation of arsenic within rice grains. Results also confirm that flooding conditions substantially increase grain arsenic. Copyright © 2013 Elsevier Ltd. All rights reserved.

  17. Mercury dilution by autochthonous organic matter in a fertilized mangrove wetland.

    PubMed

    Machado, Wilson; Sanders, Christian J; Santos, Isaac R; Sanders, Luciana M; Silva-Filho, Emmanoel V; Luiz-Silva, Wanilson

    2016-06-01

    A dated sediment core from a highly-fertilized mangrove wetland located in Cubatão (SE Brazil) presented a negative correlation between mercury (Hg) and organic carbon contents. This is an unusual result for a metal with well-known affinity to organic matter. A dilution of Hg concentrations by autochthonous organic matter explained this observation, as revealed by carbon stable isotopes signatures (δ(13)C). Mercury dilution by the predominant mangrove-derived organic matter counterbalanced the positive influences of algal-derived organic matter and clay contents on Hg levels, suggesting that deleterious effects of Hg may be attenuated. Considering the current paradigm on the positive effect of organic matter on Hg concentrations in coastal sediments and the expected increase in mangrove organic matter burial due to natural and anthropogenic stimulations of primary production, predictions on the influences of organic matter on Hg accumulation in mangrove wetlands deserve caution. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Reconstruction of the Paleoenvironment of the Early Cambrian Yurtus Black Shale in the Tarim Basin, Northwestern China, and Its Control on Organic Matter Accumulation

    NASA Astrophysics Data System (ADS)

    Li, J.; Ding, W.; Dong, L.

    2017-12-01

    The black shale in the early Cambrian Yurtus Formation (>521 Ma) in the Tarim basin, northwestern China, is characterized by its high TOC value (up to 16%) andgreat lateral continuity. It has been proven to be high-quality hydrocarbon source rocks. Abundant phytoplanktons and small shelly fossils have been reported from the lower Yurtus chert. However, recent biomarker discovery of aryl isoprenoid hydrocarbons suggests the existence of green sulfur bacteria, which indicates that the water column was stratified and the photic zone was prevailingly euxinic. These seemingly contradictory observations hamper our further understanding of the paleoenvironment in which the Yurtus shale was deposited and its control on the accumulation of organic matter. In this study, we systematically collected samples from the Yurtus Formation at the Kungaikuotan Section, and measured the organic carbon and nitrogen isotopic compositions and the content of trace element Barium (Ba). The strong negative excursions of nitrogen isotope ( -13‰) in the lower and upper parts of the Yurtus Formation are likely attributed to the biological activity of green and purple sulfur bacteria, which is consistent with our organic carbon isotope data as well as previous biomarker discovery. As green sulfur bacteria can only live in euxinic photic zone, it may indicate that the water column above this euxinic zone contains prolific organic matters which consume all the dissolved oxidants in surface ocean. It is well accepted that Ba flux can be used as an indicator for surface ocean primary productivity. Significant increase of barium content (from <100 to 2000 ppm) is observed at the same horizon as where the negative excursion of δ15Norg occurs, suggesting the substantive organic matter in the early Cambrian surface ocean mainly result from extremely high primary productivity. The abundant phytoplankton fossil record from this time period also supports this interpretation. In summary, high TOC in the

  19. The role of autochthonous organic matter in radioactive cesium accumulation to riverine fine sediments.

    PubMed

    Fujii, Manabu; Ono, Keisuke; Yoshimura, Chihiro; Miyamoto, Manami

    2018-06-15

    Anthropogenically released radioactive cesium (RCs) poses serious ecological and environmental concerns given its persistency in the environment. Although accumulation of RCs in aqueous and sedimentary environments is often reported to associate with organic matter (OM), the mechanisms responsible remain unclear. Here, we investigated RCs in fine sediments along the Abukuma River, the largest river near the Fukushima Daiichi Nuclear Power Plant, 1.5-4 years after the accident. Measuring the density-separated sediment fractions with a broad range of OM content (%) indicated that the RCs concentration (Bq·kg -1 ) is positively correlated with OM content for intermediate-density fractions in which OM is primarily characterized by autochthonous origin. This relationship, however, did not hold for light-density fractions containing a high proportion of large-size allochthonous OM. Furthermore, H 2 O 2 -assisted OM digestion and amorphous material dissolution treatments resulted in only a minor reduction in sedimentary RCs. These results along with the fact that sediments with high autochthonous OM content showed high specific surface area indicated that RCs is tightly associated with finer-grained and chemically non-labile inorganic fractions concurrently resident with autochthonous OM. Overall, our findings highlight that autochthonous OM exerts a significant control on the accumulation, transport, and fate of RCs in aqueous and sedimentary environments. Copyright © 2018 Elsevier Ltd. All rights reserved.

  20. The impact of sea-level rise on organic matter decay rates in Chesapeake Bay brackish tidal marshes

    USGS Publications Warehouse

    Kirwanm, M.L.; Langley, J.A.; Guntenspergen, Gleen R.; Megonigal, J.P.

    2013-01-01

    The balance between organic matter production and decay determines how fast coastal wetlands accumulate soil organic matter. Despite the importance of soil organic matter accumulation rates in influencing marsh elevation and resistance to sea-level rise, relatively little is known about how decomposition rates will respond to sea-level rise. Here, we estimate the sensitivity of decomposition to flooding by measuring rates of decay in 87 bags filled with milled sedge peat, including soil organic matter, roots and rhizomes. Experiments were located in field-based mesocosms along 3 mesohaline tributaries of the Chesapeake Bay. Mesocosm elevations were manipulated to influence the duration of tidal inundation. Although we found no significant influence of inundation on decay rate when bags from all study sites were analyzed together, decay rates at two of the sites increased with greater flooding. These findings suggest that flooding may enhance organic matter decay rates even in water-logged soils, but that the overall influence of flooding is minor. Our experiments suggest that sea-level rise will not accelerate rates of peat accumulation by slowing the rate of soil organic matter decay. Consequently, marshes will require enhanced organic matter productivity or mineral sediment deposition to survive accelerating sea-level rise.

  1. The impact of sea-level rise on organic matter decay rates in Chesapeake Bay brackish tidal marshes

    NASA Astrophysics Data System (ADS)

    Kirwan, M. L.; Langley, J. A.; Guntenspergen, G. R.; Megonigal, J. P.

    2013-03-01

    The balance between organic matter production and decay determines how fast coastal wetlands accumulate soil organic matter. Despite the importance of soil organic matter accumulation rates in influencing marsh elevation and resistance to sea-level rise, relatively little is known about how decomposition rates will respond to sea-level rise. Here, we estimate the sensitivity of decomposition to flooding by measuring rates of decay in 87 bags filled with milled sedge peat, including soil organic matter, roots and rhizomes. Experiments were located in field-based mesocosms along 3 mesohaline tributaries of the Chesapeake Bay. Mesocosm elevations were manipulated to influence the duration of tidal inundation. Although we found no significant influence of inundation on decay rate when bags from all study sites were analyzed together, decay rates at two of the sites increased with greater flooding. These findings suggest that flooding may enhance organic matter decay rates even in water-logged soils, but that the overall influence of flooding is minor. Our experiments suggest that sea-level rise will not accelerate rates of peat accumulation by slowing the rate of soil organic matter decay. Consequently, marshes will require enhanced organic matter productivity or mineral sediment deposition to survive accelerating sea-level rise.

  2. The impact of sea-level rise on organic matter decay rates in Chesapeake Bay brackish tidal marshes

    NASA Astrophysics Data System (ADS)

    Kirwan, M. L.; Langley, J. A.; Guntenspergen, G. R.; Megonigal, J. P.

    2012-10-01

    The balance between organic matter production and decay determines how fast coastal wetlands accumulate soil organic matter. Despite the importance of soil organic matter accumulation rates in influencing marsh elevation and resistance to sea-level rise, relatively little is known about how decomposition rates will respond to sea-level rise. Here, we estimate the sensitivity of decomposition to flooding by measuring rates of decay in 87 bags filled with milled sedge peat, including soil organic matter, roots and rhizomes. Experiments were located in field-based mesocosms along 3 mesohaline tributaries of the Chesapeake Bay. Mesocosm elevations were manipulated to influence the duration of tidal inundation. Although we found no significant influence of inundation on decay rate when bags from all study sites were analyzed together, decay rates at two of the sites increased with greater flooding. These findings suggest that flooding may enhance organic matter decay rates even in water-logged soils, but that the overall influence of flooding is minor. Our experiments suggest that sea-level rise will not accelerate rates of peat accumulation by slowing the rate of soil organic matter decay. Consequently, marshes will require enhanced organic matter productivity or mineral sediment deposition to survive accelerating sea-level rise.

  3. Mineralization of organic-matter labile fragments in the humus-accumulative horizon of soddy-podzolic soil

    NASA Astrophysics Data System (ADS)

    Trofimov, S. Ya.; Lazarev, A. S.; Fokin, A. D.

    2012-12-01

    The mineralization rate of the 14C-labeled organic matter (OM) in the humus-accumulative AE horizon of a soddy-podzolic soil was determined in a laboratory experiment. The labeling was performed in a field experiment when microamounts of 14C-labeled glucose, glycine, and uracil were added to tree waste in sacks embedded in the upper layer of the forest litter. Samples containing 14C were taken from the AE horizon (above which the sacks with the labeled material were placed) 7 and 20 months after the beginning of the experiment. The soil samples were wetted to a water content corresponding to ˜80% of the total water capacity and placed in hermetic vessels containing vials with a periodically renewed alkali solution. The incubation was performed at room temperature for 3.5 months; the alkali solutions in the vials were replaced and titrated 12 times during this period. Mineralization curves were plotted from the amounts of carbon dioxide absorbed by a 0.3 N NaOH solution, which were calculated for each time interval; its 14C content was determined by the scintillation method. The experimental treatments also included the determination of the OM mineralization rate in material from the AE horizon pretreated with a heavy liquid or a heavy liquid and a 0.1 N NaOH solution. The differences between the mineralization rates of the labeled organic matter applied to the soil in the form of glucose, glycine, and uracil under the field conditions after the interaction for 7 and 20 months were revealed. The changes in the mineralization rate after the successive extraction of the labile organic matter with a heavy liquid and a 0.1 N NaOH solution were studied. It was shown that the transformation of the labeled low-molecular-weight organic compounds in the soil over 20 months included their strong inclusion into the humus composition, which was confirmed by the similar values of the mineralization constants of the native and 14C-labeled OM. In addition, the treatments with the

  4. Organic Matter Decomposition following Harvesting and Site Preparation of a Forested Wetland

    Treesearch

    Carl C. Trettin; M. Davidian; M.F. Jurgensen; R. Lea

    1996-01-01

    Organic matter accumulation is an important process that affects ecosystem function in many northern wetlands. The cotton strip assay (CSA)was used to measure the effect of harvesting and two different site preparation treatments, bedding and trenching, on organic matter decomposition in a forested wetland. A Latin square experimental design was used to determine the...

  5. Accumulation and Distribution of Dry Matter and Nutrients in Aigeiros Poplar Plantations

    Treesearch

    G. L. Switzer; L. E. Nelson; James B. Baker

    1976-01-01

    Patterns of accumulation of dry matter and nutrients through 20 years in Aigeiros poplar plantations are strongly influenced by mode of plantation culture. Accumulation of both dry matter and nutrients in closely spaced thinned plantations is linear through age 12 to 14, after which accumulation declines and then stabilizes. In contrast, dry matter and nutrient...

  6. Organic carbon accumulation and reactivity in central Swedish lakes during the Holocene

    NASA Astrophysics Data System (ADS)

    Chmiel, H.; Kokic, J.; Niggemann, J.; Dittmar, T.; Sobek, S.

    2012-04-01

    Sedimentation and burial of particulate organic carbon (POC), received from terrestrial sources and from lake internal primary production, are responsible for the progressive accumulation and long-term storage of organic matter in lake basins. For lakes in the boreal zone of central Sweden it can be presumed, that the onset of POC accumulation occurred during the early Holocene (˜8000 BP.) after the retreat of the Scandinavian ice sheet. In this study we investigated carbon mass accumulation rates (CMARs), as well as sources and reactivity of deposited organic material, for seven lakes in central Sweden (60°N, 15°E), in order to obtain a detailed temporal resolution of carbon burial and preservation in boreal lakes. Sediment long-cores were sampled in March 2011 from the ice, and CMARs were calculated from water contents, dry bulk densities, carbon contents and radiocarbon (14C) ages of the depth profiles. To indicate the sources of the organic material and characterize its diagenetic state, we determined carbon-nitrogen ratios (C/N) as well as amounts and compositions of lignin phenols. The transitions from organic rich sediment layers to glacial till deposits were found to be in sediment depths of ˜3 m in each lake. POC contents were on average highest (25-34 wt. % C), in small lakes (≤ 0.07 km2) and lowest (10-18 wt. % C) in the larger lakes (≥ 165 km2). The CMARs over the Holocene showed significant variations and were on average lower in the early Holocene, compared to recent accumulation rates. C/N values and the composition of lignin phenols further provided indications of important changes in organic matter source and reactivity over the Holocene. In summary, our data suggest that boreal lake sediments were a significantly stronger sink for organic carbon during the last ~150 years than during earlier periods of the Holocene.

  7. The organic matter of the different ages fallow Luvisols

    NASA Astrophysics Data System (ADS)

    Giniyatullin, K. G.; Valeeva, A. A.; Smirnova, E. V.; Okunev, R. V.; Latipova, L. I.

    2018-01-01

    The study of the change in the humus state of the fallow Luvisols of different ages under the influence of weeds and meadow vegetation was carried out in dynamics (after 5 years). It is shown that both under weedy and meadow vegetation there is a statistically significant accumulation of organic matter in the upper part of the long-arable horizon. Based on the study of composition and spectral properties of soil organic matter in fallow soils of different ages concluded that the significant qualitative change of the humus state of fallow soils requires significant time, measured at least decades.

  8. A demonstration of an affinity between pyrite and organic matter in a hydrothermal setting

    PubMed Central

    2011-01-01

    One of the key-principles of the iron-sulphur world theory is to bring organic molecules close enough to interact with each other, using the surface of pyrite as a substrate in a hydrothermal setting. The present paper explores the relationship of pyrite and organic matter in a hydrothermal setting from the geological record; in hydrothermal calcite veins from Carboniferous limestones in central Ireland. Here, the organic matter is accumulated as coatings around, and through, pyrite grains. Most of the pyrite grains are euhedral-subhedral crystals, ranging in size from ca 0.1-0.5 mm in diameter, and they are scattered throughout the matrix of the vein calcite. The organic matter was deposited from a hydrothermal fluid at a temperature of at least 200°C, and gives a Raman signature of disordered carbon. This study points to an example from a hydrothermal setting in the geological record, demonstrating that pyrite can have a high potential for the concentration and accumulation of organic materials. PMID:21299877

  9. Effect of mismanagement at the state of organic matter in soil

    NASA Astrophysics Data System (ADS)

    Hladký, Jan; Elbl, Jakub; Kynický, Jindřich; Dvořáčková, Helena; Juřička, David; Pecina, Václav; Brtnický, Martin

    2017-04-01

    Organic matter is an essential part of the soil. It affects the physical, chemical, and biological properties of the soil. It is therefore necessary to maintain organic matter in the soil and its quality as the prevention of soil degradation. Loss of organic matter is in the Czech Republic threatened up to 45% of arable soil. The most important reason for the loss of organic matter in the soil is poor management, especially improper crop rotation, cultivation of erosion-prone crops where erosion takes away valuable topsoil with nutrients and organic matter. The aim of our study was to verify the influence of inappropriate management on selected 5 plots in southern Moravia in the Czech Republic. It is the region with the highest incidence of water erosion in the Czech Republic. Were selected plots with significantly sloping, where corn was grown. Samples were taken in the autumn after the harvest, each of topsoil. The sampling sites were placed in positions on the slope where soil was not damaged by erosion, as well as the place greatest damage and the place where washed soil was accumulated. Soil average humus content was for undamaged position on the slope 1.93% and 0.84 quality, the most heavily damaged part of the slope humus content dropped to 1.35% and its quality at only 0.56. In the case of position of accumulated soils was found the average amount of humus 1.70% and 0.90 quality. Humus content and its quality is statistically significantly influenced by water erosion (α = 0.05). The study showed that bad management, when there is not crop rotation adapted to the given conditions and not subjected to any suitable soil-protecting technologies, there is significant damage to soils, which shows mainly organic matter decline and a decline in its quality. Continuation of our study will verify the possibility of stabilization of soil organic matter and draft appropriate technologies.

  10. Sources and Distribution of Organic Matter in Sediments of the Louisiana Continental Shelf

    EPA Science Inventory

    Both riverine and marine sources of organic matter (OM) contribute to sediment organic pools, and either source can contribute significantly to sediment accumulation, burial, and remineralization rates on river dominated continental shelf systems. For the Louisiana continental sh...

  11. Social dynamics within decomposer communities lead to nitrogen retention and organic matter build-up in soils

    PubMed Central

    Kaiser, Christina; Franklin, Oskar; Richter, Andreas; Dieckmann, Ulf

    2015-01-01

    The chemical structure of organic matter has been shown to be only marginally important for its decomposability by microorganisms. The question of why organic matter does accumulate in the face of powerful microbial degraders is thus key for understanding terrestrial carbon and nitrogen cycling. Here we demonstrate, based on an individual-based microbial community model, that social dynamics among microbes producing extracellular enzymes (‘decomposers') and microbes exploiting the catalytic activities of others (‘cheaters') regulate organic matter turnover. We show that the presence of cheaters increases nitrogen retention and organic matter build-up by downregulating the ratio of extracellular enzymes to total microbial biomass, allowing nitrogen-rich microbial necromass to accumulate. Moreover, increasing catalytic efficiencies of enzymes are outbalanced by a strong negative feedback on enzyme producers, leading to less enzymes being produced at the community level. Our results thus reveal a possible control mechanism that may buffer soil CO2 emissions in a future climate. PMID:26621582

  12. Temperature sensitivity of organic-matter decay in tidal marshes

    USGS Publications Warehouse

    Kirwan, Matthew L.; Guntenspergen, Glenn R.; Langley, J.A.

    2014-01-01

    Approximately half of marine carbon sequestration takes place in coastal wetlands, including tidal marshes, where organic matter contributes to soil elevation and ecosystem persistence in the face of sea-level rise. The long-term viability of marshes and their carbon pools depends, in part, on how the balance between productivity and decay responds to climate change. Here, we report the sensitivity of labile soil organic-matter decay in tidal marshes to seasonal and latitudinal variations in temperature measured over a 3-year period. We find a moderate increase in decay rate at warmer temperatures (3-6% per °C, Q10 = 1.3-1.5). Despite the profound differences between microbial metabolism in wetlands and uplands, our results indicate a strong conservation of temperature sensitivity. Moreover, simple comparisons with organic-matter production suggest that elevated atmospheric CO2 and warmer temperatures will accelerate carbon accumulation in marsh soils, and potentially enhance their ability to survive sea-level rise.

  13. Carbon Characteristics and Biogeochemical Processes of Uranium Accumulating Organic Matter Rich Sediments in the Upper Colorado River Basin

    NASA Astrophysics Data System (ADS)

    Boye, K.; Noel, V.; Tfaily, M. M.; Dam, W. L.; Bargar, J.; Fendorf, S. E.

    2015-12-01

    Uranium plume persistence in groundwater aquifers is a problem on several former ore processing sites on floodplains in the upper Colorado River Basin. Earlier observations by our group and others at the Old Rifle Site, CO, have noted that U concentrations are highest in organic rich, fine-grained, and, therefore, diffusion limited sediment material. Due to the constantly evolving depositional environments of floodplains, surficial organic matter may become buried at various stages of decomposition, through sudden events such as overbank flooding and through the slower progression of river meandering. This creates a discontinuous subsurface distribution of organic-rich sediments, which are hotspots for microbial activity and thereby central to the subsurface cycling of contaminants (e.g. U) and biologically relevant elements (e.g. C, N, P, Fe). However, the organic matter itself is poorly characterized. Consequently, little is known about its relevance in driving biogeochemical processes that control U fate and transport in the subsurface. In an investigation of soil/sediment cores from five former uranium ore processing sites on floodplains distributed across the Upper Colorado River Basin we confirmed consistent co-enrichment of U with organic-rich layers in all profiles. However, using C K-edge X-ray Absorption Spectroscopy (XAS) coupled with Fourier-Transformed Ion-Cyclotron-Resonance Mass-Spectroscopy (FT-ICR-MS) on bulk sediments and density-separated organic matter fractions, we did not detect any chemical difference in the organic rich sediments compared to the surrounding coarser-grained aquifer material within the same profile, even though there were differences in organic matter composition between the 5 sites. This suggests that U retention and reduction to U(IV) is independent of C chemical composition on the bulk scale. Instead it appears to be the abundance of organic matter in combination with a limited O2 supply in the fine-grained material that

  14. The impact of selected soil organic matter fractions on the PAH accumulation in the agricultural soils from areas of different anthropopressure.

    PubMed

    Klimkowicz-Pawlas, Agnieszka; Smreczak, Bozena; Ukalska-Jaruga, Aleksandra

    2017-04-01

    The level of 16PAH accumulation was determined in 75 soil samples collected from two agricultural regions of Poland corresponding to the smallest Polish administrative unit at the LAU 2 level. Both regions are characterised by similar territory and soil cover but different history of pollution and different pressure of anthropogenic factors. Overall accumulation of Σ16PAHs in the upper soil layer was within a wide range with the median value of 291 and 1253 μg kg -1 for a non-contaminated and high anthropopressure region, respectively. Nearly 75 % of the total polycyclic aromatic hydrocarbon (PAH) pool was represented by high molecular four-to-six-ring compounds, deriving mainly from combustion sources. The total organic carbon (C org ) and black carbon (BC) contents were the main parameters associated with the PAH accumulation in soils, and the level of the regional anthropopressure was considered a significant factor. The strongest links of PAHs/BC (r = 0.70, p ≤ 0.05) were found in the region of high anthropopressure, characterized by a relatively high content of BC (up to 45.3 g kg -1 ), which tends to heavily adsorb hydrocarbons. In a region of low influence exerted by anthropopressure, the PAH/C org or PAH/BC relationships were not observed, which may suggest different diffuse sources of PAH origin and a dominant role of other organic matter fractions in retention of PAHs in soils.

  15. Predicting bioavailability and accumulation of organochlorine pesticides by Japanese medaka in the presence of humic acid and natural organic matter using passive sampling membranes.

    PubMed

    Ke, Runhui; Luo, Jianping; Sun, Liwei; Wang, Zijian; Spear, Philip A

    2007-10-01

    Adsorption to dissolved organic matter (DOM) may significantly decrease the freely dissolved concentration of many hydrophobic organic compounds and, hence, result in reduced bioavailability to aquatic organisms. Here, the suitability of using triolein-embedded cellulose acetate membrane (TECAM) as a biomimetic surrogate to assess the bioavailability of organochlorine pesticides (OCPs) in water in the presence of DOM was explored. The accumulation of OCPs was measured in TECAM and pelagic Japanese medaka (Oryzias latipes) in the laboratory after 12 h exposure to water containing different levels of Aldrich humic acid. Further, OCP uptake by TECAM and medaka in real aqueous environments was evaluated after 30 d exposures in two sites. Laboratory results showed that OCP uptake by medaka consistently decreased with increasing levels of humic acid in the range of 0-15 mg C/L in sample solutions. This tendency was closely mimicked by OCP accumulation in TECAM under the same conditions. Field results showed that TECAM accumulated similar OCP patterns as medaka (r2 = 0.92 for site 1 and r2 = 0.94 for site 2), although comparison of the in-field eight OCP concentrations in TECAM to those in medaka yielded approximately a factor of 3 (on a wet weight basis). These results suggest that the TECAM method can be used as a simple and useful tool to predict the bioavailability and bioaccumulation potential of poorly biotransformed organic compounds in pelagic fish in aqueous environment.

  16. Elevated rates of organic carbon, nitrogen, and phosphorus accumulation in a highly impacted mangrove wetland

    NASA Astrophysics Data System (ADS)

    Sanders, Christian J.; Eyre, Bradley D.; Santos, Isaac R.; Machado, Wilson; Luiz-Silva, Wanilson; Smoak, Joseph M.; Breithaupt, Joshua L.; Ketterer, Michael E.; Sanders, Luciana; Marotta, Humberto; Silva-Filho, Emmanoel

    2014-04-01

    The effect of nutrient enrichment on mangrove sediment accretion and carbon accumulation rates is poorly understood. Here we quantify sediment accretion through radionuclide tracers to determine organic carbon (OC), total nitrogen (TN), and total phosphorus (TP) accumulation rates during the previous 60 years in both a nutrient-enriched and a pristine mangrove forest within the same geomorphological region of southeastern Brazil. The forest receiving high nutrient loads has accumulated OC, TN, and TP at rates that are fourfold, twofold, and eightfold respectively, higher than those from the undisturbed mangrove. Organic carbon and TN stable isotopes (δ13C and δ15N) reflect an increased presence of organic matter (OM) originating with either phytoplankton, benthic algae, or another allochthonous source within the more rapidly accumulated sediments of the impacted mangrove. This suggests that the accumulation rate of OM in eutrophic mangrove systems may be enhanced through the addition of autochthonous and allochthonous nonmangrove material.

  17. Cadmium accumulation in zebrafish (Danio rerio) eggs is modulated by dissolved organic matter (DOM).

    PubMed

    Burnison, B Kent; Meinelt, Thomas; Playle, Richard; Pietrock, Michael; Wienke, Andreas; Steinberg, Christian E W

    2006-08-23

    Experiments were conducted to investigate factors influencing the accumulation of cadmium (Cd(2+)) into zebrafish (Danio rerio) eggs. The accumulation of (109)Cd was affected by: (1) concentration, (2) time, (3) presence of dissolved organic material (DOM), (4) different origin of DOM and (5) different parts of fish eggs. Over a 5-h exposure, zebrafish eggs showed a steady increase in Cd-accumulation. DOM-concentrations over 15ppm carbon (C) decreased Cd-uptake significantly. Both samples of DOM, brown water marsh (LM) and a eutrophic pond (SP), at 16.9ppmC, reduced the Cd-accumulation in the chorion, perivitelline liquid and the embryo. Cd was mainly accumulated in the egg's outer shell chorion (61%) and only small amounts passed through the chorion into the perivitelline liquid (38%) and embryo (1%). In the presence of LM-DOM, the accumulation of Cd into the egg components was decreased by 43% (chorion), 52% (perivitelline liquid) and 52% (embryo), respectively, compared with the control group. Similarly, the presence of SP-DOM reduced the Cd-accumulation by 29% (chorion), 61% (perivitelline liquid) and 60% (embryo), respectively, compared with the controls. DOM-concentration should be taken into consideration when determining ecotoxicological effects of Cd on fish populations.

  18. The impact of shrubbification on soil organic matter accumulation

    NASA Astrophysics Data System (ADS)

    Street, L.; Wookey, P. A.; Subke, J. A.; Baxter, R.; Garnett, M.

    2017-12-01

    The degree to which increasing vegetation productivity in the Arctic can offset permafrost carbon emissions under a warming climate is highly uncertain. Most ecosystem or earth system models predict that plant C inputs to permafrost soils will balance or exceed losses with warming, at least until about mid-century. Observations on the ground however, question whether vegetation change in Arctic ecosystems will result in even a transient net C sink. In the European Arctic, for example, rhizosphere processes associated with ectomycorrhizal (ECM) fungi have been implicated in driving rapid cycling - and thus lower storage - of soil organic C (SOC) under deciduous shrubs. Short-term incubation studies also show that decomposition of SOC can be stimulated or "primed" by new inputs of labile plant C. The implication is that as Arctic vegetation shifts towards a greater abundance of productive, and mostly ECM, deciduous trees and shrubs, net C losses from soils may result. Over decadal timescales however, the impact of changing vegetation and associated rhizosphere processes on C stock trajectories is complex - shifts in productivity and mycorrhizal status will be accompanied by other biological and physical changes that can impact decomposition. Encroachment of shrubs will likely influence both litter quality and quantity, as well as soil temperature and moisture regimes due to altered transpiration rates, shading and snow accumulation. Short-term studies, and those based on instantaneous flux measurements, can provide only limited information as to what the impact of shrubbification on SOC stocks will be. Here we use radiocarbon data, in combination with a vertically-resolved isotopic model, to examine how and why SOC accumulation in tundra soils differs between vegetation types over decades to centuries. We compare soil profiles under ECM birch, N-fixing alder, and ericaceous/lichen heath tundra in the Canadian Arctic. Early model results suggest that under alder

  19. Temperature-driven decoupling of key phases of organic matter degradation in marine sediments.

    PubMed

    Weston, Nathaniel B; Joye, Samantha B

    2005-11-22

    The long-term burial of organic carbon in sediments results in the net accumulation of oxygen in the atmosphere, thereby mediating the redox state of the Earth's biosphere and atmosphere. Sediment microbial activity plays a major role in determining whether particulate organic carbon is recycled or buried. A diverse consortium of microorganisms that hydrolyze, ferment, and terminally oxidize organic compounds mediates anaerobic organic matter mineralization in anoxic sediments. Variable temperature regulation of the sequential processes, leading from the breakdown of complex particulate organic carbon to the production and subsequent consumption of labile, low-molecular weight, dissolved intermediates, could play a key role in controlling rates of overall organic carbon mineralization. We examined sediment organic carbon cycling in a sediment slurry and in flow through bioreactor experiments. The data show a variable temperature response of the microbial functional groups mediating organic matter mineralization in anoxic marine sediments, resulting in the temperature-driven decoupling of the production and consumption of organic intermediates. This temperature-driven decoupling leads to the accumulation of labile, low-molecular weight, dissolved organic carbon at low temperatures and low-molecular weight dissolved organic carbon limitation of terminal metabolism at higher temperatures.

  20. Measuring organic matter in Everglades wetlands and the Everglades Agricultural Area

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wright, Alan L.; Hanlon, Edward A.

    Here, organic matter is a complex material that represents the long-term decay products from plants and other organisms in the soil. When organic matter is allowed to build up in a soil, the soil color at the surface usually turns a darker color, often with a red or brown hue. Typically in Florida mineral soils, organic matter content is quite low, within the range of 1 to 5%. However, in some soils that remain flooded for most of the year, organic matter can build up with time and actually become the soil. Such is the case for the organic soils,more » or histosols, found in southern Florida. These organic soils comprise much of the Water Conservation Areas, Everglades National Park (ENP), Big Cypress Basin, and the Everglades Agricultural Area (EAA). It is important to document organic matter accumulation in the Everglades to gauge the effectiveness of wetland creation and succession. For the EAA, the drained soils lose organic matter due to oxidation, so measurement of the organic matter content of these soils over the course of time indicates the oxidation potential and mineral incorporation from bedrock. Due to the wide diversity of soil types and methods of measuring soil organic matter, there is a need to devise a more universal method applicable to many types of histosols in south Florida. The intent of this publication is: 1.To describe a simple laboratory method for determining the organic matter content of the organic soils of southern Florida and demonstrate the importance of using this new procedure for improved accuracy and precision; 2.To utilize this updated laboratory procedure for field sites across Everglades wetlands and the EAA; and 3. To recommend this procedure be used by growers, state and federal agencies, and university and agency researchers dealing with the management of organic soils in southern Florida. Growers can use this improvement to organic matter measurement to keep lab testing costs low while getting a better, more

  1. Fossil organic matter characteristics in permafrost deposits of the northeast Siberian Arctic

    Treesearch

    Lutz Schirrmeister; Guido Grosse; Sebastian Wetterich; Pier Paul Overduin; Jens Straub; Edward A.G. Schuur; Hans-Wolfgang Hubberton

    2011-01-01

    Permafrost deposits constitute a large organic carbon pool highly vulnerable to degradation and potential carbon release due to global warming. Permafrost sections along coastal and river bank exposures in NE Siberia were studied for organic matter (OM) characteristics and ice content. OM stored in Quaternary permafrost grew, accumulated, froze, partly decomposed, and...

  2. [Effects of Tillage on Distribution of Heavy Metals and Organic Matter Within Purple Paddy Soil Aggregates].

    PubMed

    Shi, Qiong-bin; Zhao, Xiu-lan; Chang, Tong-ju; Lu, Ji-wen

    2016-05-15

    A long-term experiment was utilized to study the effects of tillage methods on the contents and distribution characteristics of organic matter and heavy metals (Cu, Zn, Pb, Cd, Fe and Mn) in aggregates with different sizes (including 1-2, 0.25-1, 0.05-0.25 mm and < 0.05 mm) in a purple paddy soil under two tillage methods including flooded paddy field (FPF) and paddy-upland rotation (PR). The relationship between heavy metals and organic matter in soil aggregates was also analyzed. The results showed that the aggregates of two tillage methods were dominated by 0.05-0.25 mm and < 0.05 mm particle size, respectively. The contents of organic matter in each aggregate decreased with the decrease of aggregate sizes, however, compared to PR, FPF could significantly increase the contents of organic matter in soils and aggregates. The tillage methods did not significantly affect the contents of heavy metals in soils, but FPF could enhance the accumulation and distribution of aggregate, organic matter and heavy metals in aggregates with diameters of 1-2 mm and 0.25-1 mm. Correlation analysis found that there was a negative correlation between the contents of heavy metals and organic matter in soil aggregates, but a positive correlation between the amounts of heavy metal and organic matter accumulated in soil aggregates. From the slope of the correlation analysis equations, we could found that the sensitivities of heavy metals to the changes of soil organic matters followed the order of Mn > Zn > Pb > Cu > Fe > Cd under the same tillage. When it came to the same heavy metal, it was more sensitive in PR than in FPF.

  3. Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part I: Amino acids

    NASA Astrophysics Data System (ADS)

    Woulds, Clare; Middelburg, Jack J.; Cowie, Greg L.

    2012-01-01

    Of the factors which control the quantity and composition of organic matter (OM) buried in marine sediments, the links between infaunal ingestion and gut passage and sediment geochemistry have received relatively little attention. This study aimed to use feeding experiments and novel isotope tracing techniques to quantify amino acid net accumulation and loss during polychaete gut passage, and to link this to patterns of selective preservation and decay in sediments. Microcosms containing either Arenicolamarina or Hediste (formerly Nereis) diversicolor were constructed from defaunated sediment and filtered estuarine water, and maintained under natural temperature and light conditions. They were fed with 13C-labelled diatoms daily for 8 days, and animals were transferred into fresh, un-labelled sediment after ∼20 days. Samples of fauna, microcosm sediment and faecal matter were collected after 8, ∼20 and ∼40 days, and analysed for their bulk isotopic signatures and 13C-labelled amino acid compositions. Bulk isotopic data showed that, consistent with their feeding modes, Hediste assimilated added 13C more quickly, and attained a higher labelling level than Arenicola. Both species retained the added 13C in their biomass even after removal from the food. A principal component analysis of 13C-labelled amino acid mole percentages showed clear differences in composition between the algae, faunal tissues, and sediment plus faecal matter. Further, the two species of polychaete showed different compositions in their tissues. The amino acids phenylalanine, valine, leucine, iso-leucine, threonine and proline showed net accumulation in polychaete tissues. Serine, methionine, lysine, aspartic and glutamic acids and tyrosine were rapidly lost through metabolism, consistent with their presence in easily digestible cell components (as opposed to cell walls which offer physical protection). All sample types (polychaete tissues, sediments and faecal matter) were enriched in

  4. Accumulation of organic matter in the in the Rome trough of the Appalachian basin and its subsequent thermal history

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Curtis, J.B.; Faure, G.

    1997-03-01

    We used geochemical data to examine the origin and preservation of organic matter contained in the lower part of the Huron Member of the Ohio Shale formation and the Rhinestreet Shale Member of the West Falls Formation (Devonian) in Kentucky, Ohio, West Virginia, and Virginia. The thermal history of the organic matter was determined by relating relative temperatures experienced by the organic matter to the geologic setting. The organic matter in these formations is predominantly marine in origin and was most probably derived largely from algal organisms. Although the rate of production of marine organic matter may have been uniformmore » within the basin, its preservation apparently was controlled by the existence of a set of fault-bounded anoxic subbasins associated with the Rome trough, a Cambrian structural complex. These subbasins apparently were anoxic because they limited oxygen recharge by circulating waters. Preservation of organic matter was also enhanced by periodic blooms of the alga Tasmanites and similar organisms in the waters above the subbasins during both early Huron and Rhinestreet deposition. A significant negative correlation was identified between the vitrinite reflectance peak temperature, and integrated measure of the thermal history of a rock, and the hydrogen index, a measure of the remaining hydrocarbon-generation potential of kerogen. Although peak temperatures were controlled by burial depth, excess heating occurred locally, perhaps by hot brines rising from depth through fractures associated with major structures in the study area.« less

  5. soil organic matter fractionation

    NASA Astrophysics Data System (ADS)

    Osat, Maryam; Heidari, Ahmad

    2010-05-01

    Carbon is essential for plant growth, due to its effects on other soil properties like aggregation. Knowledge of dynamics of organic matter in different locations in the soil matrix can provide valuable information which affects carbon sequestration and soil the other soil properties. Extraction of soil organic matter (SOM) fractions has been a long standing approach to elucidating the roles of soil organic matter in soil processes. Several kind fractionation methods are used and all provide information on soil organic matter function. Physical fractionation capture the effects on SOM dynamics of the spatial arrangement of primary and secondary organomineral particles in soil while chemical fractionation can not consider the spatial arrangement but their organic fractions are suitable for advanced chemical characterization. Three method of physical separation of soil have been used, sieving, sedimentation and densitometry. The distribution of organic matter within physical fractions of the soil can be assessed by sieving. Sieving separates soil particles based strictly on size. The study area is located on north central Iran, between 35° 41'- 36° 01' N and 50° 42'- 51° 14' E. Mean annual precipitation about 243.8 mm and mean annual air temperature is about 14.95 °C. The soil moisture and temperature regime vary between aridic-thermic in lower altitudes to xeric-mesic in upper altitudes. More than 36 surface soil samples (0-20 cm) were collected according to land-use map units. After preliminary analyzing of samples 10 samples were selected for further analyses in five size fractions and three different time intervals in September, January and April 2008. Fractionation carried out by dry sieving in five classes, 1-2 mm, 0.5-1 mm, 270 μm-0.5mm, 53-270 μm and <53 μm. Organic matter and C/N ratio were determined for all fractions at different time intervals. Chemical fractionation of organic matter also carried out according to Tan (2003), also Mineralogical

  6. Soil organic matter in podzol horizons of the Amazon region: Humification, recalcitrance, and dating.

    PubMed

    Tadini, Amanda M; Nicolodelli, Gustavo; Senesi, Giorgio S; Ishida, Débora A; Montes, Célia R; Lucas, Yves; Mounier, Stéphane; Guimarães, Francisco E G; Milori, Débora M B P

    2018-02-01

    Characteristics of soil organic matter (SOM) are important, especially in the Amazon region, which represents one of the world's most relevant carbon reservoirs. In this work, the concentrations of carbon and differences in its composition (humification indexes) were evaluated and compared for several horizons (0 to 390cm) of three typical Amazonian podzol profiles. Fluorescence spectroscopy was used to investigate the humic acid (HA) fractions of SOM isolated from the different samples. Simple and labile carbon structures appeared to be accumulated in surface horizons, while more complex humified compounds were leached and accumulated in intermediate and deeper Bh horizons. The results suggested that the humic acids originated from lignin and its derivatives, and that lignin could accumulate in some Bh horizons. The HA present in deeper Bh horizons appeared to originate from different formation pathways, since these horizons showed different compositions. There were significant compositional changes of HA with depth, with four types of organic matter: recalcitrant, humified, and old dating; labile and young dating; humified and young dating; and little humified and old dating. Therefore, the humification process had no direct relation with the age of the organic matter in the Amazonian podzols. Copyright © 2017 Elsevier B.V. All rights reserved.

  7. The Effect of paper mill waste and sewage sludge amendments on soil organic matter

    NASA Astrophysics Data System (ADS)

    Méndez, Ana; Barriga, Sandra; Guerrero, Francisca; Gascó, Gabriel

    2013-04-01

    In general, Mediterranean soils have low organic matter content, due to the climate characteristics of this region and inadequate land management. Traditionally, organic wastes such as manure are used as amendment in order to improve the soil quality, increasing soil fertility by the accumulation of nitrogen, phosphorus and other plant nutrients in the soil. In the last decade, other anthropogenic organic wastes such as sewage sludge or paper waste materials have been studied as soil amendments to improve physical, chemical and biological properties of soils. The objective of the present work was to study the influence of waste from a paper mill and sewage sludge amendments on soil organic matter. For this reason, soil organic matter evolution was studied using thermogravimetric analysis (TGA), the derivative (dTG) and differential thermal analysis (DTA). Thermal analytical techniques have the advantage of using full samples without pre-treatments and have been extensively used to study the evolution of organic matter in soils, to evaluate composting process or to study the evolution of organic matter of growing media.

  8. High salinity leads to accumulation of soil organic carbon in mangrove soil.

    PubMed

    Kida, Morimaru; Tomotsune, Mitsutoshi; Iimura, Yasuo; Kinjo, Kazutoshi; Ohtsuka, Toshiyuki; Fujitake, Nobuhide

    2017-06-01

    Although mangrove forests are one of the most well-known soil organic carbon (SOC) sinks, the mechanism underlying SOC accumulation is relatively unknown. High net primary production (NPP) along with the typical bottom-heavy biomass allocation and low soil respiration (SR) have been considered to be responsible for SOC accumulation. However, an emerging paradigm postulates that SR is severely underestimated because of the leakage of dissolved inorganic carbon (DIC) in groundwater. Here we propose a simple yet unique mechanism for SOC accumulation in mangrove soils. We conducted sequential extraction of water extractable organic matter (WEOM) from mangrove soils using ultrapure water and artificial seawater, respectively. A sharp increase in humic substances (HS) concentration was observed only in the case of ultrapure water, along with a decline in salinity. Extracted WEOM was colloidal, and ≤70% of it re-precipitated by the addition of artificial seawater. These results strongly suggest that HS is selectively flocculated and maintained in the mangrove soils because of high salinity. Because sea salts are a characteristic of any mangrove forest, high salinity may be one of mechanisms underlying SOC accumulation in mangrove soils. Copyright © 2017. Published by Elsevier Ltd.

  9. Remote sensing of total dry-matter accumulation in winter wheat

    NASA Technical Reports Server (NTRS)

    Tucker, C. J.; Holben, B. N.; Elgin, J. H., Jr.; Mcmurtrey, J. E., III (Principal Investigator)

    1980-01-01

    The author has identified the following significant results. Red and photographic-infrared spectral data collected on 21 dates over the growing season with a hand-held radiometer was quantitatively correlated with total dry-matter accumulation in winter wheat. The spectral data were found to be highly related to vigor and condition of the plant canopy. Two periods of drought stress and subsequent recovery from it were readily apparent in the spectral data. Simple ratios of the spectral data compensated for variations in solar intensities and, when integrated over the growing season, explained 79% of the variation in total above-ground accumulation of dry matter.

  10. Cadmium accumulation by muskmelon under salt stress in contaminated organic soil.

    PubMed

    Ondrasek, Gabrijel; Gabrijel, Ondrasek; Romic, Davor; Davor, Romic; Rengel, Zed; Zed, Rengel; Romic, Marija; Marija, Romic; Zovko, Monika; Monika, Zovko

    2009-03-15

    Human-induced salinization and trace element contamination are widespread and increasing rapidly, but their interactions and environmental consequences are poorly understood. Phytoaccumulation, as the crucial entry pathway for biotoxic Cd into the human foodstuffs, correlates positively with rhizosphere salinity. Hypothesising that organic matter decreases the bioavailable Cd(2+) pool and therefore restricts its phytoextraction, we assessed the effects of four salinity levels (0, 20, 40 and 60 mM NaCl) and three Cd levels (0.3, 5.5 and 10.4 mg kg(-1)) in peat soil on mineral accumulation/distribution as well as vegetative growth and fruit yield parameters of muskmelon (Cucumis melo L.) in a greenhouse. Salt stress reduced shoot biomass and fruit production, accompanied by increased Na and Cl and decreased K concentration in above-ground tissues. A 25- and 50-day exposure to salinity increased Cd accumulation in leaves up to 87% and 46%, respectively. Accumulation of Cd in the fruits was up to 43 times lower than in leaves and remained unaltered by salinity. Soil contamination by Cd enhanced its accumulation in muskmelon tissues by an order of magnitude compared with non-contaminated control. In the drainage solution, concentrations of Na and Cl slightly exceeded those in the irrigation solution, whereas Cd concentration in drainage solution was lower by 2-3 orders of magnitude than the total amount added. Chemical speciation and distribution modelling (NICA-Donnan) using Visual MINTEQ showed predominance of dissolved organic ligands in Cd chemisorption and complexation in all treatments; however, an increase in salt addition caused a decrease in organic Cd complexes from 99 to 71%, with free Cd(2+) increasing up to 6% and Cd-chlorocomplexes up to 23%. This work highlights the importance of soil organic reactive surfaces in reducing trace element bioavailability and phytoaccumulation. Chloride salinity increased Cd accumulation in leaves but not in fruit peel and

  11. Methylmercury production in estuarine sediments: role of organic matter

    PubMed Central

    Schartup, Amina T.; Mason, Robert P.; Balcom, Prentiss H.; Hollweg, Terill A.; Chen, Celia Y.

    2013-01-01

    Methylmercury (MeHg) affects wildlife and human health mainly through marine fish consumption. In marine systems, MeHg is formed from inorganic mercury (HgII) species primarily in sediments then accumulates and biomagnifies in the food web. Most of the fish consumed in the US are from estuarine and marine systems highlighting the importance of understanding MeHg formation in these productive regions. Sediment organic matter has been shown to limit mercury methylation in estuarine ecosystems, as a result it is often described as the primary control over MeHg production. In this paper, we explore the role of organic matter by looking at the effects of its changing sediment concentrations on the methylation rates across multiple estuaries. We measured sedimentary MeHg production at eleven estuarine sites that were selected for their contrasting biogeochemical characteristics, mercury (Hg) content, and location in the Northeastern US (ME, NH, CT, NY, and NJ). Sedimentary total Hg concentrations ranged across five orders of magnitude, increasing in concentration from the pristine, sandy sediments of Wells (ME), to industrially contaminated areas like Portsmouth (NH) and Hackensack (NJ). We find that methylation rates are the highest at locations with high Hg content (relative to carbon), and that organic matter does not hinder mercury methylation in estuaries. PMID:23194318

  12. Influence of Dissolved Organic Matter and Fe (II) on the Abiotic Reduction of Pentachloronitrobenzene

    EPA Science Inventory

    Nitroaromatic pesticides (NAPs) are hydrophobic contaminants that can accumulate in sediments by the deposition of suspended solids from surface waters. Fe(II) and dissolved organic matter (DOM), present in suboxic and anoxic zones of freshwater sediments, can transform NAPs in n...

  13. Soil organic matter content effects on dermal pesticide bioconcentration in American toads (Bufo americanus).

    PubMed

    Van Meter, Robin J; Glinski, Donna A; Henderson, W Matthew; Purucker, S Thomas

    2016-11-01

    Pesticides have been implicated as a major factor in global amphibian declines and may pose great risk to terrestrial phase amphibians moving to and from breeding ponds on agricultural landscapes. Dermal uptake from soil is known to occur in amphibians, but predicting pesticide availability and bioconcentration across soil types is not well understood. The present study was designed to compare uptake of 5 current-use pesticides (imidacloprid, atrazine, triadimefon, fipronil, and pendimethalin) in American toads (Bufo americanus) from exposure on soils with significant organic matter content differences (14.1% = high organic matter and 3.1% = low organic matter). We placed toads on high- or low-organic matter soil after applying individual current-use pesticides on the soil surface for an 8-h exposure duration. Whole body tissue homogenates and soils were extracted and analyzed using liquid chromatography-mass spectrometry to determine pesticide tissue and soil concentration, as well as bioconcentration factor in toads. Tissue concentrations were greater on the low-organic matter soil than the high-organic matter soil across all pesticides (average ± standard error; 1.23 ± 0.35 ppm and 0.78 ± 0.23 ppm, respectively), and bioconcentration was significantly higher for toads on the low-organic matter soil (analysis of covariance p = 0.002). Soil organic matter is known to play a significant role in the mobility of pesticides and bioavailability to living organisms. Agricultural soils typically have relatively lower organic matter content and serve as a functional habitat for amphibians. The potential for pesticide accumulation in amphibians moving throughout agricultural landscapes may be greater and should be considered in conservation and policy efforts. Environ Toxicol Chem 2016;35:2734-2741. © 2016 SETAC. © 2016 SETAC.

  14. Production of fluorescent dissolved organic matter in Arctic Ocean sediments.

    PubMed

    Chen, Meilian; Kim, Ji-Hoon; Nam, Seung-Il; Niessen, Frank; Hong, Wei-Li; Kang, Moo-Hee; Hur, Jin

    2016-12-16

    Little is known about the production of fluorescent dissolved organic matter (FDOM) in the anoxic oceanic sediments. In this study, sediment pore waters were sampled from four different sites in the Chukchi-East Siberian Seas area to examine the bulk dissolved organic carbon (DOC) and their optical properties. The production of FDOM, coupled with the increase of nutrients, was observed above the sulfate-methane-transition-zone (SMTZ). The presence of FDOM was concurrent with sulfate reduction and increased alkalinity (R 2  > 0.96, p < 0.0001), suggesting a link to organic matter degradation. This inference was supported by the positive correlation (R 2  > 0.95, p < 0.0001) between the net production of FDOM and the modeled degradation rates of particulate organic carbon sulfate reduction. The production of FDOM was more pronounced in a shallow shelf site S1 with a total net production ranging from 17.9 to 62.3 RU for different FDOM components above the SMTZ depth of ca. 4.1 mbsf, which presumably underwent more accumulation of particulate organic matter than the other three deeper sites. The sediments were generally found to be the sources of CDOM and FDOM to the overlying water column, unearthing a channel of generally bio-refractory and pre-aged DOM to the oceans.

  15. Production of fluorescent dissolved organic matter in Arctic Ocean sediments

    NASA Astrophysics Data System (ADS)

    Chen, Meilian; Kim, Ji-Hoon; Nam, Seung-Il; Niessen, Frank; Hong, Wei-Li; Kang, Moo-Hee; Hur, Jin

    2016-12-01

    Little is known about the production of fluorescent dissolved organic matter (FDOM) in the anoxic oceanic sediments. In this study, sediment pore waters were sampled from four different sites in the Chukchi-East Siberian Seas area to examine the bulk dissolved organic carbon (DOC) and their optical properties. The production of FDOM, coupled with the increase of nutrients, was observed above the sulfate-methane-transition-zone (SMTZ). The presence of FDOM was concurrent with sulfate reduction and increased alkalinity (R2 > 0.96, p < 0.0001), suggesting a link to organic matter degradation. This inference was supported by the positive correlation (R2 > 0.95, p < 0.0001) between the net production of FDOM and the modeled degradation rates of particulate organic carbon sulfate reduction. The production of FDOM was more pronounced in a shallow shelf site S1 with a total net production ranging from 17.9 to 62.3 RU for different FDOM components above the SMTZ depth of ca. 4.1 mbsf, which presumably underwent more accumulation of particulate organic matter than the other three deeper sites. The sediments were generally found to be the sources of CDOM and FDOM to the overlying water column, unearthing a channel of generally bio-refractory and pre-aged DOM to the oceans.

  16. Production of fluorescent dissolved organic matter in Arctic Ocean sediments

    PubMed Central

    Chen, Meilian; Kim, Ji-Hoon; Nam, Seung-Il; Niessen, Frank; Hong, Wei-Li; Kang, Moo-Hee; Hur, Jin

    2016-01-01

    Little is known about the production of fluorescent dissolved organic matter (FDOM) in the anoxic oceanic sediments. In this study, sediment pore waters were sampled from four different sites in the Chukchi-East Siberian Seas area to examine the bulk dissolved organic carbon (DOC) and their optical properties. The production of FDOM, coupled with the increase of nutrients, was observed above the sulfate-methane-transition-zone (SMTZ). The presence of FDOM was concurrent with sulfate reduction and increased alkalinity (R2 > 0.96, p < 0.0001), suggesting a link to organic matter degradation. This inference was supported by the positive correlation (R2 > 0.95, p < 0.0001) between the net production of FDOM and the modeled degradation rates of particulate organic carbon sulfate reduction. The production of FDOM was more pronounced in a shallow shelf site S1 with a total net production ranging from 17.9 to 62.3 RU for different FDOM components above the SMTZ depth of ca. 4.1 mbsf, which presumably underwent more accumulation of particulate organic matter than the other three deeper sites. The sediments were generally found to be the sources of CDOM and FDOM to the overlying water column, unearthing a channel of generally bio-refractory and pre-aged DOM to the oceans. PMID:27982085

  17. [Post-logging organic matter recovery in forest ecosystems of eastern Baikal region].

    PubMed

    Vedrova, E F; Mukhortova, L V; Ivanov, V V; Krivobokov, L V; Boloneva, M V

    2010-01-01

    The dynamics of organic matter accumulated in the soil and main vegetation elements was analyzed for post-logging forest ecosystem succession series in eastern Baikal region. The phytomass was found to allocate up 63 and 50% of carbon in undisturbed Scots pine and fir stands, respectively. The post-logging phytomass contribution to the total carbon pool appeared to decrease down to 16% in Scots pine and 6% in fir stands. In Scots pine stands, carbon storage was determined to account for almost 70% of the initial carbon 60 years after logging. In 50- to 55-year-old fir stands, carbon recovered its initial pool only by 10%. Soil carbon recorded in recently logged Scots pine and fir sites appeared to be 5 and 16 times that accumulated in the phytomass, respectively. The ratio between phytomass carbon and soil organic matter recovered back to the prelogging level in Scots pine stands by the age of 50-60 years. While phytomass carbon also increased in fir stand of the same age, it did not reach the level of the control stand.

  18. Effect of a seasonal diffuse pollution migration on natural organic matter behavior in a stratified dam reservoir.

    PubMed

    Yu, Soon Ju; Lee, Jae Yil; Ha, Sung Ryong

    2010-01-01

    This article aims to describe the influence of diffuse pollution on the temporal and spatial characteristics of natural organic matter (NOM) in a stratified dam reservoir, the Daecheong Dam, on the basis of intensive observation results and the dynamic water quality simulation using CE-QUAL-W2. Turbidity is regarded as a comprehensive representation of allochothonous organic matter from diffuse sources in storm season because the turbidity concentration showed reasonable significance in a statistical correlation with the UV absorbance at 254 nm and total phosphorus. CE-QUAL-W2 simulation results showed good consistency with the observed data in terms of dissolved organic matter (DOM) including refractory dissolved organic carbon (RDOC) and labile DOC and also well explained the internal movement of constituents and stratification phenomenon in the reservoir. Instead turbidity and NOM were related well in the upper region of the reservoir according to flow distance, gradually as changing to dissolved form of organic matter, RDOM affected organic matter concentration of reservoir water quality compared to turbidity. To control the increase of soluble organic matters in the dam reservoir, appropriate dam water discharge gate operation provided effective measurement. Because of the gate operation let avoid the accumulation of organic matter within a dam reservoir by shorten of turbid regime retention time.

  19. Organic matter in central California radiation fogs.

    PubMed

    Herckes, Pierre; Lee, Taehyoung; Trenary, Laurie; Kang, Gongunn; Chang, Hui; Collett, Jeffrey L

    2002-11-15

    Organic matter was studied in radiation fogs in the San Joaquin Valley of California during the California Regional Particulate Air Quality Study (CRPAQS). Total organic carbon (TOC) concentrations ranged from 2 to 40 ppm of C. While most organic carbon was found in solution as dissolved organic carbon (DOC), 23% on average was not dissolved inside the fog drops. We observe a clear variation of organic matter concentration with droplet size. TOC concentrations in small fog drops (<17 microm) were a factor of 3, on average, higher than TOC concentrations in larger drops. As much as half of the dissolved organic matter was determined to have a molecular weight higher than 500 Da. Deposition fluxes of organic matter in fog drops were high (0.5-4.3 microg of C m(-2) min(-1)), indicating the importance of fog processing as a vector for removal of organic matter from the atmosphere. Deposition velocities of organic matter, however, were usually found to be lower than deposition velocities for fogwater, consistent with the enrichment of the organic matter in smaller fog drops with lower terminal settling velocities.

  20. Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea).

    PubMed

    Jessen, Gerdhard L; Lichtschlag, Anna; Ramette, Alban; Pantoja, Silvio; Rossel, Pamela E; Schubert, Carsten J; Struck, Ulrich; Boetius, Antje

    2017-02-01

    Bottom-water oxygen supply is a key factor governing the biogeochemistry and community composition of marine sediments. Whether it also determines carbon burial rates remains controversial. We investigated the effect of varying oxygen concentrations (170 to 0 μM O 2 ) on microbial remineralization of organic matter in seafloor sediments and on community diversity of the northwestern Crimean shelf break. This study shows that 50% more organic matter is preserved in surface sediments exposed to hypoxia compared to oxic bottom waters. Hypoxic conditions inhibit bioturbation and decreased remineralization rates even within short periods of a few days. These conditions led to the accumulation of threefold more phytodetritus pigments within 40 years compared to the oxic zone. Bacterial community structure also differed between oxic, hypoxic, and anoxic zones. Functional groups relevant in the degradation of particulate organic matter, such as Flavobacteriia , Gammaproteobacteria , and Deltaproteobacteria , changed with decreasing oxygenation, and the microbial community of the hypoxic zone took longer to degrade similar amounts of deposited reactive matter. We conclude that hypoxic bottom-water conditions-even on short time scales-substantially increase the preservation potential of organic matter because of the negative effects on benthic fauna and particle mixing and by favoring anaerobic processes, including sulfurization of matter.

  1. Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea)

    PubMed Central

    Jessen, Gerdhard L.; Lichtschlag, Anna; Ramette, Alban; Pantoja, Silvio; Rossel, Pamela E.; Schubert, Carsten J.; Struck, Ulrich; Boetius, Antje

    2017-01-01

    Bottom-water oxygen supply is a key factor governing the biogeochemistry and community composition of marine sediments. Whether it also determines carbon burial rates remains controversial. We investigated the effect of varying oxygen concentrations (170 to 0 μM O2) on microbial remineralization of organic matter in seafloor sediments and on community diversity of the northwestern Crimean shelf break. This study shows that 50% more organic matter is preserved in surface sediments exposed to hypoxia compared to oxic bottom waters. Hypoxic conditions inhibit bioturbation and decreased remineralization rates even within short periods of a few days. These conditions led to the accumulation of threefold more phytodetritus pigments within 40 years compared to the oxic zone. Bacterial community structure also differed between oxic, hypoxic, and anoxic zones. Functional groups relevant in the degradation of particulate organic matter, such as Flavobacteriia, Gammaproteobacteria, and Deltaproteobacteria, changed with decreasing oxygenation, and the microbial community of the hypoxic zone took longer to degrade similar amounts of deposited reactive matter. We conclude that hypoxic bottom-water conditions—even on short time scales—substantially increase the preservation potential of organic matter because of the negative effects on benthic fauna and particle mixing and by favoring anaerobic processes, including sulfurization of matter. PMID:28246637

  2. Balance between salt stress and endogenous hormones influence dry matter accumulation in Jerusalem artichoke.

    PubMed

    Shao, Tianyun; Li, Lingling; Wu, Yawen; Chen, Manxia; Long, Xiaohua; Shao, Hongbo; Liu, Zhaopu; Rengel, Zed

    2016-10-15

    Salinity is one of the most serious environmental stresses limiting agricultural production. Production of Jerusalem artichoke on saline land is strategically important for using saline land resources. The interaction between plant hormones and salinity stress in governing Jerusalem artichoke (Helianthus tuberosus) growth is unclear. Jerusalem artichoke (variety Nanyu-1) was grown under variable salinity stress in the field, and a role of endogenous hormones [zeatin (ZT), auxins (IAA), gibberellins (GA3) and abscisic acid (ABA)] in regulating sugar and dry matter accumulation in tubers was characterized. Under mild salt stress (≤2.2gNaClkg(-1) soil), Nanyu-1 grew well with no significant alteration of dry matter distribution to stems and tubers. In contrast, under moderate salt stress (2.7gNaClkg(-1) soil), the distribution to stem decreased and to tubers decreased significantly. Mild salt stress induced sugar accumulation in tubers at the beginning of the tuber-expansion period, but significantly inhibited (i) transfer of non-reducing sugars to tubers, and (ii) polymerization and accumulation of fructan during the tuber-expansion stage. Under different salinity stress, before the stolon growth, the ratio of IAA/ABA in leaves increased significantly and that of GA3/ABA increased slightly; during tuber development, these ratios continued to decrease and reached the minimum late in the tuber-expansion period. While, salt stress inhibited (i) underground dry matter accumulation, (ii) tuber dry matter accumulation efficiency, (iii) transport of non-reducing sugars to tubers, and (iv) fructan accumulation efficiency during the tuber-expansion period; these effects were accompanied by significantly decreased tuber yield with an increase in salinity. With soil salinity increasing, the synthesis of IAA and GA3 was inhibited in leaves and tubers, while ABA synthesis was stimulated. In brief, tuber yield would significantly decreased with the increase of salinity

  3. Electron transfer properties of peat organic matter: from electrochemical analysis to redox processes in peatlands

    NASA Astrophysics Data System (ADS)

    Sander, Michael; Getzinger, Gordon; Walpen, Nicolas

    2017-04-01

    Peat organic matter contains redox-active functional groups that can accept and/or donate electrons from and to biotic and abiotic reaction partners present in peatlands. Several studies have provided evidence that electron accepting quinone moieties in the peat organic matter may act as terminal electron acceptors for anaerobic microbial respiration. This respiration pathway may competitively suppress methanogenesis and thereby lead to excess carbon dioxide to methane formation in peatlands. Electron donating phenolic moieties in peat organic matter have long been considered to inhibit microbial and enzymatic activities in peatlands, thereby contributing to carbon stabilization and accumulation in these systems. Phenols are expected to be comparatively stable in anoxic parts of the peats as phenoloxidases, a class of enzymes capable of oxidatively degrading phenols, require molecular oxygen as co-substrate. Despite the general recognition of the importance of redox-active moieties in peat organic matter, the abundance, redox properties and reactivities of these moieties remain poorly studied and understood, in large part due to analytical challenges. This contribution will, in a first part, summarize recent advances in our research group on the analytical chemistry of redox-active moieties in peat organic matter. We will show how mediated electrochemical analysis can be used to quantify the capacities of electron accepting and donating moieties in both dissolved and particulate peat organic matter. We will link these capacities to the physicochemical properties of peat organic matter and provide evidence for quinones and phenols as major electron accepting and donating moieties, respectively. The second part of this contribution will highlight how these electroanalytical techniques can be utilized to advance a more fundamental understanding of electron transfer processes involving peat organic matter. These processes include the redox cycling (i.e., repeated

  4. Influence of organic matter on the transport of Cryptosporidium parvum oocysts in a ferric oxyhydroxide-coated quartz sand saturated porous medium

    USGS Publications Warehouse

    Abudalo, R.A.; Ryan, J.N.; Harvey, R.W.; Metge, D.W.; Landkamer, Lee L.

    2010-01-01

    To assess the effect of organic matter on the transport of Cryptosporidium parvum oocysts in a geochemically heterogeneous saturated porous medium, we measured the breakthrough and collision efficiencies of oocysts as a function of dissolved organic matter concentration in a flow-through column containing ferric oxyhydroxide-coated sand. We characterized the surface properties of the oocysts and ferric oxyhydroxide-coated sand using microelectrophoresis and streaming potential, respectively, and the amount of organic matter adsorbed on the ferric oxyhydroxide-coated sand as a function of the concentration of dissolved organic matter (a fulvic acid isolated from Florida Everglades water). The dissolved organic matter had no significant effect on the zeta potential of the oocysts. Low concentrations of dissolved organic matter were responsible for reversing the charge of the ferric oxyhydroxide-coated sand surface from positive to negative. The charge reversal and accumulation of negative charge on the ferric oxyhydroxide-coated sand led to increases in oocyst breakthrough and decreases in oocyst collision efficiency with increasing dissolved organic matter concentration. The increase in dissolved organic matter concentration from 0 to 20 mg L-1 resulted in a two-fold decrease in the collision efficiency. ?? 2009 Elsevier Ltd.

  5. Soft X-Ray Photoionizing Organic Matter from Comet Wild 2: Evidence for the Production of Organic Matter by Impact Processes

    NASA Technical Reports Server (NTRS)

    Zolensky, Michael E.; Wirick, S.; Flynn, G. J.; Jacobsen, C.; Na

    2011-01-01

    The Stardust mission collected both mineral and organic matter from Comet Wild 2 [1,2,3,4]. The organic matter discovered in Comet Wild 2 ranges from aromatic hydrocarbons to simple aliphatic chains and is as diverse and complex as organic matter found in carbonaceous chondrites and interplanetary dust particles.[3,5,6,7,8,9]. Compared to insoluble organic matter from carbonaceous chondrites the organic matter in Comet Wild 2 more closely resembles organic matter found in the IDPS both hydrous and anhydrous. Common processes for the formation of organic matter in space include: Fischer-Tropsch, included with this aqueous large body and moderate heating alterations; UV irradiation of ices; and; plasma formation and collisions. The Fischer-Tropsch could only occur on large bodies processes, and the production of organic matter by UV radiation is limited by the penetration depth of UV photons, on the order of a few microns or less for most organic matter, so once organic matter coats the ices it is formed from, the organic production process would stop. Also, the organic matter formed by UV irradiation would, by the nature of the process, be in-sensitive to photodissocation from UV light. The energy of soft X-rays, 280-300 eV occur within the range of extreme ultraviolet photons. During the preliminary examination period we found a particle that nearly completely photoionized when exposed to photons in the energy range 280-310eV. This particle experienced a long exposure time to the soft x-ray beam which caused almost complete mass loss so little chemical information was obtain. During the analysis of our second allocation we have discovered another particle that photoionized at these energies but the exposure time was limited and more chemical information was obtained.

  6. Reduction in the exchange of coastal dissolved organic matter and microgels by inputs of extra riverine organic matter.

    PubMed

    Shiu, Ruei-Feng; Lee, Chon-Lin; Chin, Wei-Chun

    2017-12-15

    Rivers drive large amounts of terrestrial and riverine organic matter into oceans. These organic materials may alter the self-assembly of marine dissolved organic matter (DOM) polymers into microgels and can even affect the behavior of existing natural microgels. We used Suwannee River humic acid, fulvic acid, and natural organic matter as a model of riverine organic matter (ROM) to investigate the impacts of ROM input on DOM polymer and microgel conversion. Our results indicated that the release of extra ROM, even at low concentrations (0.1-10 mg L -1 ), into the marine organic matter pool decreased the size of self-assembled DOM polymers (from 4-5 μm to < 1 μm) and dispersed the existing natural microgels into smaller particles (from 4-5 μm to 2-3 μm). The particle size of the microgel phase was also less sensitive than that of the DOM polymers to external changes (addition of ROM). This size reduction in DOM aggregation and existing microgels may be closely tied to the surface chemistry of the organic matter, such as negative surface charge stabilization and Ca 2+ cross-linking bridges. These findings reveal that ROM inputs may therefore impede the self-assembly of DOM polymers into particulate organic matter and reduce the sedimentation flux of organic carbon and other elements from surface water to the deep ocean, thereby disturbing the biological pump, the downward transportation of nutrients, and the marine organic carbon cycle. Copyright © 2017 Elsevier Ltd. All rights reserved.

  7. The contentious nature of soil organic matter.

    PubMed

    Lehmann, Johannes; Kleber, Markus

    2015-12-03

    The exchange of nutrients, energy and carbon between soil organic matter, the soil environment, aquatic systems and the atmosphere is important for agricultural productivity, water quality and climate. Long-standing theory suggests that soil organic matter is composed of inherently stable and chemically unique compounds. Here we argue that the available evidence does not support the formation of large-molecular-size and persistent 'humic substances' in soils. Instead, soil organic matter is a continuum of progressively decomposing organic compounds. We discuss implications of this view of the nature of soil organic matter for aquatic health, soil carbon-climate interactions and land management.

  8. [Characteristics of dry matter production and nitrogen accumulation in barley genotypes with high nitrogen utilization efficiency].

    PubMed

    Huang, Yi; Li, Ting-Xuan; Zhang, Xi-Zhou; Ji, Lin

    2014-07-01

    A pot experiment was conducted under low (125 mg x kg-1) and normal (250 mg x kg(-1)) nitrogen treatments. The nitrogen uptake and utilization efficiency of 22 barley cultivars were investigated, and the characteristics of dry matter production and nitrogen accumulation in barley were analyzed. The results showed that nitrogen uptake and utilization efficiency were different for barley under two nitrogen levels. The maximal values of grain yield, nitrogen utilization efficiency for grain and nitrogen harvest index were 2.87, 2.91 and 2.47 times as those of the lowest under the low nitrogen treatment. Grain yield and nitrogen utilization efficiency for grain and nitrogen harvest index of barley genotype with high nitrogen utilization efficiency were significantly greater than low nitrogen utilization efficiency, and the parameters of high nitrogen utilization efficiency genotype were 82.1%, 61.5% and 50.5% higher than low nitrogen utilization efficiency genotype under the low nitrogen treatment. Dry matter mass and nitrogen utilization of high nitrogen utilization efficiency was significantly higher than those of low nitrogen utilization efficiency. A peak of dry matter mass of high nitrogen utilization efficiency occurred during jointing to heading stage, while that of nitrogen accumulation appeared before jointing. Under the low nitrogen treatment, dry matter mass of DH61 and DH121+ was 34.4% and 38.3%, and nitrogen accumulation was 54. 8% and 58.0% higher than DH80, respectively. Dry matter mass and nitrogen accumulation seriously affected yield before jointing stage, and the contribution rates were 47.9% and 54.7% respectively under the low nitrogen treatment. The effect of dry matter and nitrogen accumulation on nitrogen utilization efficiency for grain was the largest during heading to mature stages, followed by sowing to jointing stages, with the contribution rate being 29.5% and 48.7%, 29.0% and 15.8%, respectively. In conclusion, barley genotype with high

  9. Pyrogenic organic matter accumulation after density and particle size fractionation of burnt Cambisol using solid-state nuclear magnetic resonance spectroscopy

    NASA Astrophysics Data System (ADS)

    López-Martín, María; Knicker, Heike

    2017-04-01

    Fires lead to formation of the pyrogenic organic matter (PyOM) which is quickly incorporated into the soil. The charring process involves chemical alterations of the litter material, where biologically available structures are transferred into aromatic polymers, such as black carbon (BC) and black nitrogen (BN). In order to reveal the medium term fate of BC and BN in soils, the top 5 cm of A horizons from unburnt, single and double burnt Cambisols of the Sierra de Aznalcóllar (Southern Spain) were collected 7 year after an intense fire and separated according to their density and their size (Golchin et al., 1994; Sohi et al., 2001). The density fractionation yielded in the free (fPOM), occluded particulate organic matter (oPOM) and the mineral-association organic fraction (MAF) and was performed using a sodium polytungstate solution with a density of 1.8 g cm-3. The MAF was further separated into the sand (2 mm to 63 μm) and coarse silt (63 to 20 μm) and fine fraction (< 20 μm) by wet sieving. Organic carbon (Corg) and total nitrogen (Nt) were determined by dry combustion (975°C). The chemical composition was examined by solid-state 13C and 15N NMR spectroscopy. The 13C and 15N NMR spectra of all fPOM and oPOM fractions are dominated by signals assignable to O-alkyl C followed by resonance lines of alkyl C. The spectra indicate that fPOM is mainly composed of undecomposed plant debris whereas oPOM is rich in unsubstituted-aliphatic material. The lack of intensity in the chemical shift region from 160 to140 ppm in the spectra of the small size fractions reveals the absence of lignin residues. This, their low C/N ratios and the clear 13C-signal attributed to carboxylic C allows the conclusion that this fraction mainly composed of microbial residues. Former studies evidenced that aromaticity of the burnt bulk soil decreased with elapsing time after the fire. The present investigation revealed that most of the remaining aromatic C accumulated in the POM fractions

  10. Interstellar organic matter in meteorites

    NASA Technical Reports Server (NTRS)

    Yang, J.; Epstein, S.

    1983-01-01

    Deuterium-enriched hydrogen is present in organic matter in such meteorites as noncarbonaceous chondrites. The majority of the unequilibrated primitive meteorites contain hydrogen whose D/H ratios are greater than 0.0003, requiring enrichment (relative to cosmic hydrogen) by isotope exchange reactions taking place below 150 K. The D/H values presented are the lower limits for the organic compounds derived from interstellar molecules, since all processes subsequent to their formation, including terrestrial contamination, decrease their D/H ratios. In contrast, the D/H ratios of hydrogen associated with hydrated silicates are relatively uniform for the meteorites analyzed. The C-13/C-12 ratios of organic matter, irrespective of D/H ratio, lie well within those observed for the earth. Present findings suggest that other interstellar material, in addition to organic matter, is preserved and is present in high D/H ratio meteorites.

  11. A chemical extraction method for mimicking bioavailability of polycyclic aromatic hydrocarbons to wheat grown in soils containing various amounts of organic matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Shu Tao; Fuliu Xu; Wenxin Liu

    Severe contamination of agricultural soils by polycyclic aromatic hydrocarbons (PAHs) occurs in many places in China mainly as a result of coal and biomass combustion. Because ingestion is the main source of human exposure to PAHs and vegetables are basic ingredients for the Chinese diet, it is important to know how and to what extent PAHs are accumulated in vegetables produced in contaminated soils. This study, evaluated the extent to which organic matter contents in soils influence the accumulation of PAHs by the roots of wheat plants and have developed a rapid chemical method for determining the bioavailability of PAH.more » Four PAHs, naphthalene, acenaphthylene, fluorene, and phenanthrene, were added to natural soil samples with different amounts of organic matter for pot experiments to evaluate apparent bioavailability of PAHs to wheat roots (Triticum aestivum L.). The extractabilities of PAHs in the soil were tested by a sequential extraction scheme using accelerated solvent extraction with water, n-hexane, and a mixture of dichloromethane and acetone as solvents. The water or n-hexane-extractable PAHs were positively correlated to dissolved organic matter (DOM) and negatively correlated to total organic matter (TOM), indicating mobilization and immobilization effects of DOM and TOM on soil PAHs, respectively. The apparent accumulation of PAHs by wheat roots was also positively and negatively correlated to DOM and TOM, respectively. As a result, there are positive correlations between the amounts of PAHs extracted by water or n-hexane and the quantities accumulated in plant roots, suggesting the feasibility of using water- or n-hexanes-extractable fractions as indicators of PAH availability to plants. 19 refs., 8 figs., 1 tab.« less

  12. Soil type-depending effect of paddy management: composition and distribution of soil organic matter

    NASA Astrophysics Data System (ADS)

    Urbanski, Livia; Kölbl, Angelika; Lehndorff, Eva; Houtermans, Miriam; Schad, Peter; Zhang, Gang-Lin; Rahayu Utami, Sri; Kögel-Knabner, Ingrid

    2016-04-01

    Paddy soil management is assumed to promote soil organic matter accumulation and specifically lignin caused by the resistance of the aromatic lignin structure against biodegradation under anaerobic conditions during inundation of paddy fields. The present study investigates the effect of paddy soil management on soil organic matter composition compared to agricultural soils which are not used for rice production (non-paddy soils). A variety of major soil types, were chosen in Indonesia (Java), including Alisol, Andosol and Vertisol sites (humid tropical climate of Java, Indonesia) and in China Alisol sites (humid subtropical climate, Nanjing). This soils are typically used for rice cultivation and represent a large range of soil properties to be expected in Asian paddy fields. All topsoils were analysed for their soil organic matter composition by solid-state 13C nuclear magnetic resonance spectroscopy and lignin-derived phenols by CuO oxidation method. The soil organic matter composition, revealed by solid-state 13C nuclear magnetic resonance, was similar for the above named different parent soil types (non-paddy soils) and was also not affected by the specific paddy soil management. The contribution of lignin-related carbon groups to total SOM was similar in the investigated paddy and non-paddy soils. A significant proportion of the total aromatic carbon in some paddy and non-paddy soils was attributed to the application of charcoal as a common management practise. The extraction of lignin-derived phenols revealed low VSC (vanillyl, syringyl, cinnamyl) values for all investigated soils, being typical for agricultural soils. An inherent accumulation of lignin-derived phenols due to paddy management was not found. Lignin-derived phenols seem to be soil type-dependent, shown by different VSC concentrations between the parent soil types. The specific paddy management only affects the lignin-derived phenols in Andosol-derived paddy soils which are characterized by

  13. Soil organic matter regulates molybdenum storage and mobility in forests

    USGS Publications Warehouse

    Marks, Jade A; Perakis, Steven; King, Elizabeth K.; Pett-Ridge, Julie

    2015-01-01

    The trace element molybdenum (Mo) is essential to a suite of nitrogen (N) cycling processes in ecosystems, but there is limited information on its distribution within soils and relationship to plant and bedrock pools. We examined soil, bedrock, and plant Mo variation across 24 forests spanning wide soil pH gradients on both basaltic and sedimentary lithologies in the Oregon Coast Range. We found that the oxidizable organic fraction of surface mineral soil accounted for an average of 33 %of bulk soil Mo across all sites, followed by 1.4 % associated with reducible Fe, Al, and Mn-oxides, and 1.4 % in exchangeable ion form. Exchangeable Mo was greatest at low pH, and its positive correlation with soil carbon (C) suggests organic matter as the source of readily exchangeable Mo. Molybdenum accumulation integrated over soil profiles to 1 m depth (τMoNb) increased with soil C, indicating that soil organic matter regulates long-term Mo retention and loss from soil. Foliar Mo concentrations displayed no relationship with bulk soil Mo, and were not correlated with organic horizon Mo or soil extractable Mo, suggesting active plant regulation of Mo uptake and/or poor fidelity of extractable pools to bioavailability. We estimate from precipitation sampling that atmospheric deposition supplies, on average, over 10 times more Mo annually than does litterfall to soil. In contrast, bedrock lithology had negligible effects on foliar and soil Mo concentrations and on Mo distribution among soil fractions. We conclude that atmospheric inputs may be a significant source of Mo to forest ecosystems, and that strong Mo retention by soil organic matter limits ecosystem Mo loss via dissolution and leaching pathways.

  14. Accumulation of humic-like and proteinaceous dissolved organic matter in zero-discharge aquaculture systems as revealed by fluorescence EEM spectroscopy.

    PubMed

    Yamin, G; Borisover, M; Cohen, E; van Rijn, J

    2017-01-01

    Recirculating aquaculture systems (RAS), offering many economic and fish husbandry benefits, are characterized by an accumulation of dissolved organic matter (DOM) and, specifically, humic substances (HS). As reported in a number of studies, HS may affect biological activity in both invertebrates and vertebrates. Given the accumulation of HS in RAS, it is therefore of great interest to characterize DOM and, specifically, its HS fraction in the RAS. The present study was aimed at characterizing long-term changes in fluorescent DOM composition in the culture water of RAS systems, which were operated in a novel, zero water exchange mode. Two such zero-discharge recirculating systems (ZDS) were examined: a freshwater system, stocked with hybrid tilapia (Oreochromis aureus x Oreochromis niloticus) and a marine system, stocked with gilthead seabream (Sparus aurata). Excitation-emission matrices (EEMs) of fluorescence, coupled with parallel factor analysis (PARAFAC), were used to characterize and quantify the different DOM components in the ZDS. In the culture water, one tryptophan-like and four HS-like components were identified. The fluorescence intensities of three of the HS-like components as well as the tryptophan-like component increased at comparable rates during ZDS operation while a much slower accumulation of these compounds was observed in a parallel operated, flow-through, freshwater aquarium. The ZDS examined in this study comprised a sludge digestion stage where a considerable accumulation of all fluorescent components was detected. A HS-like components and a tryptophan-like component in blood of tilapia from the freshwater ZDS were similar to components found in the culture water. Blood levels of both components were higher in fish cultured in the DOM-rich ZDS than in fish raised in the control, flow-through freshwater aquarium. Fluorescence of the HS-like component found in the fish blood increased also with time of ZDS operation. The finding that fish

  15. Sedimentary organic matter sources, benthic consumption and burial in west Spitsbergen fjords - Signs of maturing of Arctic fjordic systems?

    NASA Astrophysics Data System (ADS)

    Zaborska, Agata; Włodarska-Kowalczuk, Maria; Legeżyńska, Joanna; Jankowska, Emilia; Winogradow, Aleksandra; Deja, Kajetan

    2018-04-01

    Mature ecosystems sequester little organic carbon (Corg) in sediments, as the complex and effective food webs consume most available organic matter within the water column and sediment, in contrast to young systems, where a large proportion of Corg is buried in deeper sediment layers. In this paper we hypothesize that "warmer" Atlantic water influenced fjord exhibits the 'mature' system features as compared to "cooler" Arctic water influenced fjord. Corg concentrations, sources and burial rates, as well as macrobenthic community standing stocks, taxonomic and functional composition and carbon demand, were compared in two west Spitsbergen fjords that are to different extents influenced by Atlantic water and can be treated as representing a cold one (Hornsund) and a warm one (Kongsfjorden). Water, sediments and macrofauna were collected at three stations in the central basin of each fjord. Corg, Ntot, δ13Corg and δ15N were measured in suspended matter, sediment cores and possible organic matter sources. The composition of sources of sedimentary organic matter was modeled by Mix-SIAR Bayesian stable isotope mixing models. The 210Pb method was used to calculate sediment accumulation rates, Corg accumulation and burial rates. The sedimentary Corg concentration and accumulation rate were larger in Hornsund than in Kongsfjorden. The contributions of pelagic sources to the Corg in sediments were similar in both fjords, macroalgal detritus had a higher importance in Kongsfjorden, while terrestrial sources were more important in Hornsund. Similar density and species richness were noted in both fjords, but higher biomass, individual biomass, production and carbon demand of benthic communities were noted in Kongsfjorden despite the lower amounts of Corg in sediments, indicating that macrobenthos responds to quality rather than quantity of available food. Subsurface tube-building conveyer belt detritus feeders (maldanids and oweniids) were responsible for higher standing

  16. Organic Matter Quality and its Influence on Carbon Turnover and Stabilization in Northern Peatlands

    NASA Astrophysics Data System (ADS)

    Turetsky, M. R.; Wieder, R. K.

    2002-12-01

    Peatlands cover 3-5 % of the world's ice-free land area, but store about 33 % of global terrestrial soil carbon. Peat accumulation in northern regions generally is controlled by slow decomposition, which may be limited by cold temperatures and water-logging. Poor organic matter quality also may limit decay, and microbial activity in peatlands likely is regulated by the availability of labile carbon and/or nutrients. Conversely, carbon in recalcitrant soil structures may be chemically protected from microbial decay, particularly in peatlands where carbon can be buried in anaerobic soils. Soil organic matter quality is controlled by plant litter chemical composition and the susceptibility of organic compounds to decomposition through time. There are a number of techniques available for characterizing organic quality, ranging from chemical proximate or elemental analysis to more qualitative methods such as nuclear magenetic resonance, pyrolysis/mass spectroscopy, and Fourier transform infrared spectroscopy. We generally have relied on proximate analysis for quantitative determination of several organic fractions (i.e., water-soluble carbohydrates, soluble nonpolars, water-soluble phenolics, holocellulose, and acid insoluble material). Our approaches to studying organic matter quality in relation to C turnover in peatlands include 1) 14C labelling of peatland vegetation along a latitudinal gradient in North America, allowing us to follow the fate of 14C tracer in belowground organic fractions under varying climates, 2) litter bag studies focusing on the role of individual moss species in litter quality and organic matter decomposition, and 3) laboratory incubations of peat to explore relationships between organic matter quality and decay. These studies suggest that proximate organic fractions vary in lability, but that turnover of organic matter is influenced both by plant species and climate. Across boreal peatlands, measures of soil recalcitrance such as acid

  17. Predicting nitrogen and acidity effects on long-term dynamics of dissolved organic matter.

    PubMed

    Rowe, E C; Tipping, E; Posch, M; Oulehle, F; Cooper, D M; Jones, T G; Burden, A; Hall, J; Evans, C D

    2014-01-01

    Increases in dissolved organic carbon (DOC) fluxes may relate to changes in sulphur and nitrogen pollution. We integrated existing models of vegetation growth and soil organic matter turnover, acid-base dynamics, and organic matter mobility, to form the 'MADOC' model. After calibrating parameters governing interactions between pH and DOC dissolution using control treatments on two field experiments, MADOC reproduced responses of pH and DOC to additions of acidifying and alkalising solutions. Long-term trends in a range of acid waters were also reproduced. The model suggests that the sustained nature of observed DOC increases can best be explained by a continuously replenishing potentially-dissolved carbon pool, rather than dissolution of a large accumulated store. The simulations informed the development of hypotheses that: DOC increase is related to plant productivity increase as well as to pH change; DOC increases due to nitrogen pollution will become evident, and be sustained, after soil pH has stabilised. Copyright © 2013 Elsevier Ltd. All rights reserved.

  18. Topographic controls on black carbon accumulation in Alaskan black spruce forest soils: implications for organic matter dynamics

    Treesearch

    E.S. Kane; W.C. Hockaday; M.R. Turetsky; C.A. Masiello; D.W. Valentine; B.P. Finney; J.A. Badlock

    2010-01-01

    There is still much uncertainty as to how wildfire affects the accumulation of burn residues (such as black carbon [BC]) in the soil, and the corresponding changes in soil organic carbon (SOC) composition in boreal forests. We investigated SOC and BC composition in black spruce forests on different landscape positions in Alaska, USA. Mean BC stocks in surface mineral...

  19. Subcritical water extraction of organic matter from sedimentary rocks.

    PubMed

    Luong, Duy; Sephton, Mark A; Watson, Jonathan S

    2015-06-16

    Subcritical water extraction of organic matter containing sedimentary rocks at 300°C and 1500 psi produces extracts comparable to conventional solvent extraction. Subcritical water extraction of previously solvent extracted samples confirms that high molecular weight organic matter (kerogen) degradation is not occurring and that only low molecular weight organic matter (free compounds) are being accessed in analogy to solvent extraction procedures. The sedimentary rocks chosen for extraction span the classic geochemical organic matter types. A type I organic matter-containing sedimentary rock produces n-alkanes and isoprenoidal hydrocarbons at 300°C and 1500 psi that indicate an algal source for the organic matter. Extraction of a rock containing type II organic matter at the same temperature and pressure produces aliphatic hydrocarbons but also aromatic compounds reflecting the increased contributions from terrestrial organic matter in this sample. A type III organic matter-containing sample produces a range of non-polar and polar compounds including polycyclic aromatic hydrocarbons and oxygenated aromatic compounds at 300°C and 1500 psi reflecting a dominantly terrestrial origin for the organic materials. Although extraction at 300°C and 1500 psi produces extracts that are comparable to solvent extraction, lower temperature steps display differences related to organic solubility. The type I organic matter produces no products below 300°C and 1500 psi, reflecting its dominantly aliphatic character, while type II and type III organic matter contribute some polar components to the lower temperature steps, reflecting the chemical heterogeneity of their organic inventory. The separation of polar and non-polar organic compounds by using different temperatures provides the potential for selective extraction that may obviate the need for subsequent preparative chromatography steps. Our results indicate that subcritical water extraction can act as a suitable

  20. Soil Organic Matter Dynamics in the Rothamsted Long-term Experiments

    NASA Astrophysics Data System (ADS)

    MacDonald, A.; Poulton, P.

    2009-04-01

    Soil science research at Rothamsted dates from 1843 when John Bennet Lawes and Joseph Henry Gilbert started the first of a series of what became long-term field experiments. The main object of these experiments was to examine the effect of inorganic and organic fertilisers and manures on crop yield and soil fertility. These "Classical Field Experiments" included studies on winter wheat (Broadbalk 1843), spring barley (Hoos Barley 1852) and permanent grassland (Park Grass 1856). Additional experiments were established in the 20th century to examine the value of ley-arable cropping, including the Highfield and Fosters Ley-arable experiments (1948) and the Woburn Ley-arable experiment (1938). More recently, the effects of incorporating organic manures and cereal straw have been examined. Early results quickly showed the benefits of inorganic N and P fertilisers on crop production, but the effects of contrasting land uses and management practices on soil properties emerged more slowly. Measurements of soil organic carbon (C) and nitrogen (N) in soils taken at intervals from the long-term experiments indicate that the rate of soil organic matter (SOM) accumulation is controlled largely by the balance between the rate of organic matter inputs and its oxidation rate, and that these are strongly influenced by land use and management, soil texture (especially clay content) and climate. A recent examination of soil organic C data from two long-term grassland experiments in the UK (including Park Grass) indicates that any changes observed in soil organic C under long-term grasslands over the past 40 years are more likely to be due to changes in land use and management rather than climate change. Data from the Rothamsted Long-term experiments have been used to develop and test biogeochemical models of C and N dynamics. In particular, the Roth-C model has successfully simulated soil C dynamics in the long-term experiments at Rothamsted and elsewhere. This model uses several

  1. Limitation of Bacterial Growth by Dissolved Organic Matter and Iron in the Southern Ocean†

    PubMed Central

    Church, Matthew J.; Hutchins, David A.; Ducklow, Hugh W.

    2000-01-01

    The importance of resource limitation in controlling bacterial growth in the high-nutrient, low-chlorophyll (HNLC) region of the Southern Ocean was experimentally determined during February and March 1998. Organic- and inorganic-nutrient enrichment experiments were performed between 42°S and 55°S along 141°E. Bacterial abundance, mean cell volume, and [3H]thymidine and [3H]leucine incorporation were measured during 4- to 5-day incubations. Bacterial biomass, production, and rates of growth all responded to organic enrichments in three of the four experiments. These results indicate that bacterial growth was constrained primarily by the availability of dissolved organic matter. Bacterial growth in the subtropical front, subantarctic zone, and subantarctic front responded most favorably to additions of dissolved free amino acids or glucose plus ammonium. Bacterial growth in these regions may be limited by input of both organic matter and reduced nitrogen. Unlike similar experimental results in other HNLC regions (subarctic and equatorial Pacific), growth stimulation of bacteria in the Southern Ocean resulted in significant biomass accumulation, apparently by stimulating bacterial growth in excess of removal processes. Bacterial growth was relatively unchanged by additions of iron alone; however, additions of glucose plus iron resulted in substantial increases in rates of bacterial growth and biomass accumulation. These results imply that bacterial growth efficiency and nitrogen utilization may be partly constrained by iron availability in the HNLC Southern Ocean. PMID:10653704

  2. Accumulation of organic C components in soil and aggregates

    PubMed Central

    Yu, Hongyan; Ding, Weixin; Chen, Zengming; Zhang, Huanjun; Luo, Jiafa; Bolan, Nanthi

    2015-01-01

    To explore soil organic carbon (SOC) accumulation mechanisms, the dynamics of C functional groups and macroaggregation were studied synchronously through aggregate fractionation and 13C NMR spectroscopy in sandy loam soil following an 18-year application of compost and fertilizer in China. Compared with no fertilizer control, both compost and fertilizer improved SOC content, while the application of compost increased macroaggregation. Fertilizer application mainly increased the levels of recalcitrant organic C components characterized by methoxyl/N-alkyl C and alkyl C, whereas compost application mainly promoted the accumulation of methoxyl/N-alkyl C, phenolic C, carboxyl C, O-alkyl C and di-O-alkyl C in bulk soil. The preferential accumulation of organic C functional groups in aggregates depended on aggregate size rather than nutrient amendments. These groups were characterized by phenolic C and di-O-alkyl C in the silt + clay fraction, carboxyl C in microaggregates and phenolic C, carboxyl C and methoxyl/N-alkyl C in macroaggregates. Thus, the differences in accumulated organic C components in compost- and fertilizer-amended soils were primarily attributable to macroaggregation. The accumulation of methoxyl/N-alkyl C in microaggregates effectively promoted macroaggregation. Our results suggest that organic amendment rich in methoxyl/N-alkyl C effectively improved SOC content and accelerated macroaggregation in the test soil. PMID:26358660

  3. Sources of plant-derived carbon and stability of organic matter in soil: Implications for global change

    Treesearch

    Susan E. Crow; Kate Lajtha; Timothy R. Filley; Chris Swanston; Richard D. Bowden; Bruce A. Caldwell

    2009-01-01

    Alterations in forest productivity and changes in the relative proportion of above- and belowground biomass may have nonlinear effects on soil organic matter (SOM) storage. To study the influence of plant litter inputs on SOM accumulation, the Detritus Input Removal and Transfer (DIRT) Experiment continuously alters above- and belowground plant inputs to soil by a...

  4. Organic matters: investigating the sources, transport, and fate of organic matter in Fanno Creek, Oregon

    USGS Publications Warehouse

    Sobieszczyk, Steven; Keith, Mackenzie K.; Goldman, Jami H.; Rounds, Stewart A.

    2015-01-01

    The U.S. Geological Survey (USGS), in cooperation with Clean Water Services, recently completed an investigation into the sources, transport, and fate of organic matter in the Fanno Creek watershed. The information provided by this investigation will help resource managers to implement strategies aimed at decreasing the excess supply of organic matter that contributes to low dissolved-oxygen levels in Fanno Creek and downstream in the Tualatin River during summer. This fact sheet summarizes the findings of the investigation.

  5. Organic matter turnover in subsoils: current knowledge and future challenges

    NASA Astrophysics Data System (ADS)

    Marschner, Bernd

    2014-05-01

    In the past, carbon flux measurements and modelling have mostly considered the topsoil where C-concentrations, root densities and microbial activities are generally highest. However, depending on climate zone and land use, this soil compartment contains only 30-50% of the C-stocks of the first meter. If the deeper subsoil down to 3 m is also considered, the contribution of topsoil carbon stocks to total soil C-pools is only 20-40%. Another distinct property of subsoil organic matter is its high apparent 14C age. The 14C age of bulk soil organic matter below 30 cm depth generally increases continuously indicating mean residence times of several 103 to 104 years. Large pool size and high radiocarbon age suggest that subsoil OM has accumulated at very low rates over very long time periods and therefore appears to be very stable. In this review, several hypotheses for explaining why subsoil SOM is so seemingly old and inert are presented. These questions are being addressed in a recently granted German research unit consisting of 9 subprojects from all soil science disciplines using field measurements of C-fluxes, 14C analyses and conducting field and lab experiments.

  6. Tracing global biogeochemical cycles and meridional overturning circulation using chromophoric dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Nelson, Norman B.; Siegel, David A.; Carlson, Craig A.; Swan, Chantal M.

    2010-02-01

    Basin-scale distributions of light absorption by chromophoric dissolved organic matter (CDOM) are positively correlated (R2 > 0.8) with apparent oxygen utilization (AOU) within the top kilometer of the Pacific and Indian Oceans. However, a much weaker correspondence is found for the Atlantic (R2 < 0.05). Strong correlation between CDOM and AOU indicates that CDOM is created as a byproduct of the oxidation of organic matter from sinking particles. The observed meridional-depth sections of CDOM result from a balance between biogeochemical processes (autochthonous production and solar bleaching) and the meridional overturning circulation. Rapid mixing in the Atlantic dilutes CDOM in the interior and implies that the time scale for CDOM accumulation is greater than ˜50 years. CDOM emerges as a unique tracer for diagnosing changes in biogeochemistry and the overturning circulation, similar to dissolved oxygen, with the additional feature that it can be quantified from satellite observation.

  7. The effects of organic matter-mineral interactions and organic matter chemistry on diuron sorption across a diverse range of soils.

    PubMed

    Smernik, Ronald J; Kookana, Rai S

    2015-01-01

    Sorption of non-ionic organic compounds to soil is usually expressed as the carbon-normalized partition coefficient (KOC), because it is assumed that the main factor that influences the amount sorbed is the organic carbon content of the soil. However, KOC can vary by a factor of at least ten across a range of soils. We investigated two potential causes of variation in diuron KOC - organic matter-mineral interactions and organic matter chemistry - for a diverse set of 34 soils from Sri Lanka, representing a wide range of soil types. Treatment with hydrofluoric acid (HF-treatment) was used to concentrate soil organic matter. HF-treatment increased KOC for the majority of soils (average factor 2.4). We attribute this increase to the blocking of organic matter sorption sites in the whole soils by minerals. There was no significant correlation between KOC for the whole soils and KOC for the HF-treated soils, indicating that the importance of organic matter-mineral interactions varied greatly amongst these soils. There was as much variation in KOC across the HF-treated soils as there was across the whole soils, indicating that the nature of soil organic matter is also an important contributor to KOC variability. Organic matter chemistry, determined by solid-state (13)C nuclear magnetic resonance (NMR) spectroscopy, was correlated with KOC for the HF-treated soils. In particular, KOC increased with the aromatic C content (R=0.64, p=1×10(-6)), and decreased with O-alkyl C (R=-0.32, p=0.03) and alkyl C (R=-0.41, p=0.004) content. Copyright © 2014 Elsevier Ltd. All rights reserved.

  8. Is organic matter found in glaciers similar to soil organic matter? A detailed molecular-level investigation of organic matter found in cryoconite holes on the Athabasca Glacier

    NASA Astrophysics Data System (ADS)

    Simpson, M. J.; Xu, Y.; Eyles, N.; Simpson, A. J.; Baer, A.

    2009-04-01

    Cryoconite is a dark-coloured, dust-like material found on the surfaces of glaciers. Cryoconite has received much interest recently because cryoconite holes, which are produced by accelerated ice melt, act as habitats for microbes on glacier surfaces and accelerate ice melt. To the best of our knowledge, cyroconite organic matter (COM) has not yet been chemically characterized at the molecular level. In this study, organic matter biomarkers and a host of Nuclear Magnetic Resonance (NMR) techniques were used to characterize COM from the Athabasca Glacier in the Canadian Rocky Mountains. The research questions that were targeted by this study include: 1) what are the sources of COM on the Athabasca Glacier; 2) are there any biomarker and/or NMR evidence for microbial community activity in the cryoconite holes; and 3) is the COM structurally similar to terrestrial OM? Solvent extracts contained large quantities of fatty acids, n-alkanols, n-alkanes, wax esters and sterols. A large contribution of C23, C25 and C27 relative to C29 and C31 n-alkanes suggests that allochthonous COM is mainly from lower order plants (mosses, lichens). This is confirmed by the absence of lignin phenols (after copper (II) oxidation) in extracts and NMR analyses of COM. Solution-state 1H NMR reveals prominent signals from microbial components, while solid-state 13C Cross Polarization Magic Angle Spinning NMR analysis shows an atypically high alkyl/O-alkyl ratio, suggesting that COM is unique compared to organic matter found in nearby soils. The NMR results suggest that COM is dominated by microbial-derived compounds which were confirmed by phospholipid fatty acid analysis, which showed a significant microbial contribution, primarily from bacteria and minor microeukaryotes. Both biomarker and NMR data suggest that COM likely supports active microbial communities on the Athabasca Glacier and that COM composition is uniquely different than that found in terrestrial environments. Our data

  9. Study of the organic matter in the DSDP /JOIDES/ cores, legs 10-15. [Deep Sea Drilling Program

    NASA Technical Reports Server (NTRS)

    Simoneit, B. R. T.; Burlingame, A. L.

    1974-01-01

    The composition of the organic matter collected on legs 10 to 15 of the DSDP (Deep Sea Drilling Project) is described. Distributions of various alkanes, carboxylic acids, steroids and terpenoids, isoprenoid ketones and olefins, and aromatic polycyclic compounds are given. Samples analyzed had terrigenous clay components, with variable organic carbon contents and thus diverse solvent soluble matter. The distribution patterns for the various compound series monitored were of marine derivation, with the terrigenous components superimposed. Diagenesis of steroids appeared to proceed via both stanones and stanols to their respective steranes. Degradative processes were observed to be operative: oxidative products, mainly ketones derived from steroids and phytol, were identified, probably due to microbial alteration prior to or during sedimentation. Loss of alkane and fatty acid C preferences and presence of polycyclic aromatics evinced maturation. Results indicate that the accumulation, degradation, diagenesis and maturation of organic matter occurs in various steps in the deep sea environment.

  10. Influence of algal and bacterial particulate organic matter on benzo[a]pyrene bioaccumulation in Daphnia magna.

    PubMed

    Gourlay, Catherine; Mouchel, Jean-Marie; Tusseau-Vuillemin, Marie-Hélène; Garric, Jeanne

    2005-06-15

    In order to better asses the influence of organic matter on the bioavailability of hydrophobic organic contaminants, the effect of algae and POM of bacterial origin on the bioaccumulation of benzo[a]pyrene in Daphnia magna was evaluated. The bioaccumulation was monitored with increasing concentrations of particulate organic matter (POM) and dissolved organic matter (DOM). In all experiments, the presence of POM greatly reduced the bioaccumulation of benzo[a]pyrene. The reduction was more pronounced in the presence of algae, for which we observed a 99%-reduction effect in the presence of 6 x10 (5) cell/mL (equivalent to 5.3 mg C/L). The bioaccumulation of benzo[a]pyrene was decreased by 49% by organic matter of bacterial origin at 4.7 mg C/L. Assuming that benzo[a]pyrene was partitioned between water, DOM and POM and supposing that D. magna accumulated free benzo[a]pyrene via respiration and POM-bond benzo[a]pyrene via ingestion, bioaccumulation data allowed to estimate the dietary uptake rate of benzo[a]pyrene as well as partitioning coefficients K(POC) and K(DOC). Despite the ingestion of contaminated particles, we could not observe any dietary uptake of benzo[a]pyrene in daphnids. We verified, as usually supposed, that the bioaccumulation of benzo[a]pyrene to D. magna occurs mainly via direct contact. Very high partitioning coefficients (log K(POC) between 5.2 and 6.2) were estimated. This study pointed out the great influence of biogenic organic matter on the fate and the bioavailability of benzo[a]pyrene in aquatic ecosystems.

  11. Molybdenum isotope fractionation during adsorption to organic matter

    USGS Publications Warehouse

    King, Elizabeth K.; Perakis, Steven; Pett-Ridge, Julie C.

    2018-01-01

    Organic matter is of emerging interest as a control on molybdenum (Mo) biogeochemistry, and information on isotope fractionation during adsorption to organic matter can improve interpretations of Mo isotope variations in natural settings. Molybdenum isotope fractionation was investigated during adsorption onto insolubilized humic acid (IHA), a surrogate for organic matter, as a function of time (2–170 h) and pH (2–7). For the time series experiment performed at pH 4.2, the average Mo isotope fractionation between the solution and the IHA (Δ98Mosolution-IHA) was 1.39‰ (± 0.16‰, 2σ, based on 98Mo/95Mo relative to the NIST 3134 standard) at steady state. For the pH series experiment, Mo adsorption decreased as pH increased from 2.0 to 6.9, and the Δ98Mosolution-IHA increased from 0.82‰ to 1.79‰. We also evaluated natural Mo isotope patterns in precipitation, foliage, organic horizon, surface mineral soil, and bedrock from 12 forested sites in the Oregon Coast Range. The average Mo isotope offset observed between precipitation and organic (O) horizon soil was 2.1‰, with light Mo isotopes adsorbing preferentially to organic matter. Fractionation during adsorption to organic matter is similar in magnitude and direction to prior observations of Mo fractionation during adsorption to Fe- and Mn- (oxyhydr)oxides. Our finding that organic matter influences Mo isotope composition has important implications for the role of organic matter as a driver of trace metal retention and isotopic fractionation.

  12. Molybdenum isotope fractionation during adsorption to organic matter

    NASA Astrophysics Data System (ADS)

    King, E. K.; Perakis, S. S.; Pett-Ridge, J. C.

    2018-02-01

    Organic matter is of emerging interest as a control on molybdenum (Mo) biogeochemistry, and information on isotope fractionation during adsorption to organic matter can improve interpretations of Mo isotope variations in natural settings. Molybdenum isotope fractionation was investigated during adsorption onto insolubilized humic acid (IHA), a surrogate for organic matter, as a function of time (2-170 h) and pH (2-7). For the time series experiment performed at pH 4.2, the average Mo isotope fractionation between the solution and the IHA (Δ98Mosolution-IHA) was 1.39‰ (±0.16‰, 2σ, based on 98Mo/95Mo relative to the NIST 3134 standard) at steady state. For the pH series experiment, Mo adsorption decreased as pH increased from 2.0 to 6.9, and the Δ98Mosolution-IHA increased from 0.82‰ to 1.79‰. We also evaluated natural Mo isotope patterns in precipitation, foliage, organic horizon, surface mineral soil, and bedrock from 12 forested sites in the Oregon Coast Range. The average Mo isotope offset observed between precipitation and organic (O) horizon soil was 2.1‰, with light Mo isotopes adsorbing preferentially to organic matter. Fractionation during adsorption to organic matter is similar in magnitude and direction to prior observations of Mo fractionation during adsorption to Fe- and Mn- (oxyhydr)oxides. Our finding that organic matter influences Mo isotope composition has important implications for the role of organic matter as a driver of trace metal retention and isotopic fractionation.

  13. An original data treatment for infrared spectra of organic matter, application to extracted soil organic matter

    NASA Astrophysics Data System (ADS)

    Gomes Rossin, Bruna; Redon, Roland; Raynaud, Michel; Nascimento, Nadia Regina; Mounier, Stéphane

    2017-04-01

    Infrared spectra of extracted organic matter are easy and rapid to do, but generally hard to interpreted over the presence or not of certain organic functions. Indeed, the organic matter is a complex mixture of molecules often having absorption overlapping and it is also difficult to have a well calibrated or normalised spectra due to the difficulty to have a well known solid content or homogeneity for a sample (Monakhova et al. 2015, Tadini et al. 2015, Bardy et al. 2008). In this work, the IRTF (InfraRed Fourier Transform) spectra were treated by an original algorithm developed to obtain the principal components of the IRTF spectra and their contributions for each sample. This bilinear decomposition used a PCA initialisation and the principal components were estimated from vectors calculated by PCA and linearly combined to provide non-negative signals minimizing a criterion based on cross-correlation. Hence, using this decomposition, it is possible to define IRTF signal of organic matter fractions like humic acid or fulvic acid depending on their origin like surface of depth of soil profiles. The method was used on a set of sample from Upper Negro River Basin (Amazon, Brazil) (Bueno,2009), where three soils sequences from surface to two meter depth containing 10 slices each. The sequences were sampled on a podzol well drain, a hydromorphic podzol and a cryptopodzol. From the IRTF data five representative component spectra were defined for all the extracted organic matter , and using other chemical composition information, a mechanism of organic matter fate is proposed to explain the observed results. Bardy, M., E. Fritsch, S. Derenne, T. Allard, N. R. do Nascimento, and G. T. Bueno. 2008. "Micromorphology and Spectroscopic Characteristics of Organic Matter in Waterlogged Podzols of the Upper Amazon Basin." Geoderma 145 (3-4): 222-30. Bueno, G.T. Appauvrissement et podzolisation des latérites du baissin du Rio Negro et gênese dês Podzols dans le haut bassin

  14. Shape-preserving transformations of organic matter and compositions thereof

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kaehr, Bryan J.; Meyer, Kristin; Townson, Jason L.

    The present invention relates to methods of transforming organic matter into organic-inorganic composites, inorganic replicas, or conductive replicas. Organic matter, such as biological cells and tissue and organs, can be converted into such composites and replicas using the methods described herein. In particular, such methods transform organic matter (into inorganic, organic-inorganic, or conductive constructs), while simultaneously preserving microscopic and/or macroscopic structural detail.

  15. Spectral mapping of soil organic matter

    NASA Technical Reports Server (NTRS)

    Kristof, S. J.; Baumgardner, M. F.; Johannsen, C. J.

    1974-01-01

    Multispectral remote sensing data were examined for use in the mapping of soil organic matter content. Computer-implemented pattern recognition techniques were used to analyze data collected in May 1969 and May 1970 by an airborne multispectral scanner over a 40-km flightline. Two fields within the flightline were selected for intensive study. Approximately 400 surface soil samples from these fields were obtained for organic matter analysis. The analytical data were used as training sets for computer-implemented analysis of the spectral data. It was found that within the geographical limitations included in this study, multispectral data and automatic data processing techniques could be used very effectively to delineate and map surface soils areas containing different levels of soil organic matter.

  16. Influence of sediment-organic matter quality on growth and polychlorobiphenyl bioavailability in Echinodermata (Amphiura filiformis)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gunnarsson, J.S.; Granberg, M.E.; Nilsson, H.C.

    Sediment total organic carbon (TOC) content is considered to be a primary food source for benthic invertebrates and a major factor influencing the partitioning and bioavailability of sediment-associated organic contaminants. Most studies report that both toxicity and uptake of sediment-associated contaminants by benthic organisms are inversely proportional to sediment TOC content. The aim of this study was to determine the importance of the TOC quality for the bioavailability of sediment-associated organic contaminants and the growth of benthic macrofauna. The common infaunal brittle star Amphiura filiformis was exposed to a base sediment covered by a {sup 14}C-polychlorobipenyl (3,3{prime}4,4{prime}-{sup 14}C-tetrachlorobiphenyl (TCB)) contaminatedmore » top layer (0--2 cm), enriched to the same TOC content with 31 g TOC/m{sup 2} of different quality and origin. The following carbon sources, ranging from labile to refractory, were used: (1) green macroalga (Ulva lactuca), (2) brown macroalga (Ascophyllum nodosum), (3) eelgrass (Zostera Marina), (4) phytoplankton (Ceratium spp.), and (5) lignins of terrestrial origin. Characterization of the organic matter quality was accomplished by measuring the content of amino acids, lipids, C, N, and polyphenolic compounds. The reactivity of the sedimentary organic matter was assessed by means of respiration and dissolved inorganic nitrogen flux measurements. The experiment was carried out in 1-L glass jars, each containing four brittle stars and the contaminated and enriched sediment. The jars were circulated in a flow-through mode with filtered seawater. Somatic growth (regeneration of a precut arm) and bioaccumulation of {sup 14}C-TCB were measured at 10 sampling occasions during 48 d of exposure. Growth rates, TCB uptake rates, and steady-state concentrations differed significantly between treatments and were correlated to the qualities of the organic substrates. The greatest TCB accumulation and growth were observed in

  17. Bromine accumulation in acidic black colluvial soils

    NASA Astrophysics Data System (ADS)

    Martínez Cortizas, Antonio; Ferro Vázquez, Cruz; Kaal, Joeri; Biester, Harald; Costa Casais, Manuela; Taboada Rodríguez, Teresa; Rodríguez Lado, Luis

    2016-02-01

    Recent investigations showed that bromine is incorporated to soil organic matter (SOM), its content increasing with humification. But few research was done on its long-term accumulation and the role played by pedogenetic processes, as those involved in organic matter stabilization. We investigated bromine content and distribution in four deep, acidic, organic-rich, Holocene soils from an oceanic area of Western Europe. Bromine concentrations (93-778 μg g-1) in the silt + clay (<50 μm) fraction were on average 3-times higher than those (17-250 μg g-1) in the fine earth (<2 mm), the former containing almost all bromine (90 ± 5%). Inventories were between 148 and 314 g m-2, indicating a rather large variability in a small area, and total estimated retention was low (6-16%). The degree of SOM bromination, expressed as the Br/C molar ratio, varied between 0.03 and 1.20 mmol Br/mol C. The ratio was highly correlated (n = 23, r2 0.88, p < 0.01) with the age of the SOM for the last ∼12 ka. Partial least squares modeling indicates that bromine concentration depends on the amount of organic matter stabilized as aluminium-OM associations, and to a lesser extent on soil acidity (pH) and iron-OM associations. Thus, at scales of thousands of years, bromine accumulation in acidic soils is linked to the pool of metal-clay-stabilized organic matter.

  18. Soil organic matter decomposition follows plant productivity response to sea-level rise

    NASA Astrophysics Data System (ADS)

    Mueller, Peter; Jensen, Kai; Megonigal, James Patrick

    2015-04-01

    The accumulation of soil organic matter (SOM) is an important mechanism for many tidal wetlands to keep pace with sea-level rise. SOM accumulation is governed by the rates of production and decomposition of organic matter. While plant productivity responses to sea-level rise are well understood, far less is known about the response of SOM decomposition to accelerated sea-level rise. Here we quantified the effects of sea-level rise on SOM decomposition by exposing planted and unplanted tidal marsh monoliths to experimentally manipulated flood duration. The study was performed in a field-based mesocosm facility at the Smithsonian Global Change Research Wetland, a micro tidal brackish marsh in Maryland, US. SOM decomposition was quantified as CO2 efflux, with plant- and SOM-derived CO2 separated using a stable carbon isotope approach. Despite the dogma that decomposition rates are inversely related to flooding, SOM mineralization was not sensitive to varying flood duration over a 35 cm range in surface elevation in unplanted mesocoms. In the presence of plants, decomposition rates were strongly and positively related to aboveground biomass (p≤0.01, R2≥0.59). We conclude that rates of soil carbon loss through decomposition are driven by plant responses to sea level in this intensively studied tidal marsh. If our result applies more generally to tidal wetlands, it has important implications for modeling carbon sequestration and marsh accretion in response to accelerated sea-level rise.

  19. Soil organic matter composition affected by potato cropping managements

    USDA-ARS?s Scientific Manuscript database

    Organic matter is a small but important soil component. As a heterogeneous mixture of geomolecules and biomolecules, soil organic matter (SOM) can be fractionated into distinct pools with different solubility and lability. Water extractable organic matter (WEOM) fraction is the most labile and mobil...

  20. Deformation behaviors of peat with influence of organic matter.

    PubMed

    Yang, Min; Liu, Kan

    2016-01-01

    Peat is a kind of special material rich in organic matter. Because of the high content of organic matter, it shows different deformation behaviors from conventional geotechnical materials. Peat grain has a non-negligible compressibility due to the presence of organic matter. Biogas can generate from peat and can be trapped in form of gas bubbles. Considering the natural properties of peat, a special three-phase composition of peat is described which indicates the existence of organic matter and gas bubbles in peat. A stress-strain-time model is proposed for the compression of organic matter, and the surface tension effect is considered in the compression model of gas bubbles. Finally, a mathematical model has been developed to simulate the deformation behavior of peat considering the compressibility of organic matter and entrapped gas bubbles. The deformation process is the coupling of volume variation of organic matter, gas bubbles and water drainage. The proposed model is used to simulate a series of peat laboratory oedometer tests, and the model can well capture the test results with reasonable model parameters. Effects of model parameters on deformation of peat are also analyzed.

  1. Isolation and chemical characterization of dissolved and colloidal organic matter

    USGS Publications Warehouse

    Aiken, G.; Leenheer, J.

    1993-01-01

    Commonly used techniques for the concentration and isolation of organic matter from water, such as preparative chromatography, ultrafiltration and reverse osmosis, and the methods used to analyze the organic matter obtained by these methods are reviewed. The development of methods to obtain organic matter that is associated with fractions of the dissolved organic carbon other than humic substances, such as organic bases, hydrophilic organic acids and colloidal organic matter are discussed. Methods specifically used to study dissolved organic nitrogen and dissolved organic phosphorous are also discussed. -from Authors

  2. Effects of different grazing intensities of sheep on accumulated particulate organic matter (POM) and organic matter mineralization in low-alpine grassland soils in Norway.

    NASA Astrophysics Data System (ADS)

    Martinsen, V.; Mulder, J.; Austrheim, G.; Mysterud, A.

    2009-04-01

    Summer farming in mountain areas of Norway (e.g. livestock grazing and logging of fire wood) has reduced during the last century; however the number of sheep stayed relatively unchanged implying a translocation of grazing impact. Herbivores may affect both vegetation dynamics and nutrient cycling. Much information exists about the impact of cession of grazing, but little is known about the ecological effect of different grazing intensities. Using a controlled grazing experiment organized as total randomized block design (starting 2001), with three levels of grazing intensities by sheep (high, low and no sheep), effects of different grazing pressure on soil organic matter (SOM) mineralization and amount and quality of POM was studied in a low alpine region of Southern Norway. In a parallel study in situ measurements were conducted to determine biomass production rate and the quality of litter input. Soil samples from the O-horizon were incubated (determining C and N mineralization) and fractionated (free light POM fraction, density <1,8 g cm-3, size 20-2000 µm). It was hypothesized that high levels of grazing would induce (1) higher C and N mineralization rates and (2) less POM, due to physical (trampling) and chemical (input of faeces and urea) impact of sheep in addition to observed changes in vegetation cover. Results indicate that the amount of POM was in the order low>no sheep>high, indicating that low grazing intensity build up a potential larger mineralizable fraction compared with high and no sheep. The C content of POM was in the order no sheep>low>high and the N content of POM in the order low>no sheep>high. The C content of POM at high grazing intensity was significantly lower than at low grazing intensity and no sheep (ns. different). The low C content of POM at high grazing intensities (but not the N content) was the main reason for the observed CN ratios of the POM fraction being lowest at high densities (no sheep>low>high). Initial analysis of C and

  3. Oxidoreductases and cellulases in lichens: possible roles in lichen biology and soil organic matter turnover.

    PubMed

    Beckett, Richard P; Zavarzina, Anna G; Liers, Christiane

    2013-06-01

    Lichens are symbiotic associations of a fungus (usually an Ascomycete) with green algae and/or a cyanobacterium. They dominate on 8 % of the world's land surface, mainly in Arctic and Antarctic regions, tundra, high mountain elevations and as components of dryland crusts. In many ecosystems, lichens are the pioneers on the bare rock or soil following disturbance, presumably because of their tolerance to desiccation and high temperature. Lichens have long been recognized as agents of mineral weathering and fine-earth stabilization. Being dominant biomass producers in extreme environments they contribute to primary accumulation of soil organic matter. However, biochemical role of lichens in soil processes is unknown. Our recent research has demonstrated that Peltigeralean lichens contain redox enzymes which in free-living fungi participate in lignocellulose degradation and humification. Thus lichen enzymes may catalyse formation and degradation of soil organic matter, particularly in high-stress communities dominated by lower plants. In the present review we synthesize recently published data on lichen phenol oxidases, peroxidases, and cellulases and discuss their possible roles in lichen physiology and soil organic matter transformations. Copyright © 2013 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  4. The influence of large wood accumulations on riparian seed bank diversity

    NASA Astrophysics Data System (ADS)

    Osei, N. A.

    2012-04-01

    Little is known about the structure and complexity of seed bank within the riparian corridor and the how large wood accumulations contribute to riparian seed bank diversity. This study aimed to examine and quantify seed bank assemblage and diversity along the undisturbed riparian corridor of the Highland Water, a second order lowland stream draining the New Forest. Seed bank samples were collected from five riparian corridor microhabitats namely mid-channel bars, floodplains, bare banks, banks adjacent large wood accumulations and within large wood accumulations that differed in their hydrologic connectivity with the river. Descriptive statistics and ordination methods applied to the floristic and sediment data sets indicates that sediment organic matter content, species richness and proportions of functional types distinctly differed among the riparian microhabitats types but there was no difference in viable seed densities. Banks adjacent large wood accumulations were the most floristically diverse and rich in organic matter with mid-channel bars exhibiting the reverse. This was due to the ability of large wood accumulations to buffer varying magnitudes of physical gradients and sort seeds and sediments, therefore altering the character of bare banks. This study not only strengthen the evidence that riparian corridors exhibit elevated spatial sediment and vegetation heterogeneity but also demonstrates the importance of large wood accumulation as habitat modifiers, ecosystem engineers and conservation sink for moisture, organic matter and seeds, resources essential for riparian vegetation conservation, recovery and restoration efforts.

  5. Chemical and isotopic signature of bulk organic matter and hydrocarbon biomarkers within mid-slope accretionary sediments of the northern Cascadia margin gas hydrate system

    USGS Publications Warehouse

    Kaneko, Masanori; Shingai, Hiroshi; Pohlman, John W.; Naraoka, Hiroshi

    2010-01-01

    The chemical and isotopic compositions of sedimentary organic matter (SOM) from two mid-slope sites of the northern Cascadia margin were investigated during Integrated Ocean Drilling Program (IODP) Expedition 311 to elucidate the organic matter origins and identify potential microbial contributions to SOM. Gas hydrate is present at both locations (IODP Sites U1327 and U1328), with distinct patterns of near-seafloor structural accumulations at the cold seep Site U1328 and deeper stratigraphic accumulations at the slope-basin Site U1327. Source characterization and evidence that some components of the organic matter have been diagenetically altered are determined from the concentrations and isotopic compositions of hydrocarbon biomarkers, total organic carbon (TOC), total nitrogen (TN) and total sulfur (TS). The carbon isotopic compositions of TOC (δ13CTOC = −26 to −22‰) and long-chain n-alkanes (C27, C29 and C31, δ13C = −34 to − 29‰) suggest the organic matter at both sites is a mixture of 1) terrestrial plants that employ the C3 photosynthetic pathway and 2) marine algae. In contrast, the δ15NTN values of the bulk sediment (+ 4 to + 8‰) are consistent with a predominantly marine source, but these values most likely have been modified during microbial organic matter degradation. The δ13C values of archaeal biomarker pentamethylicosane (PMI) (− 46.4‰) and bacterial-sourced hopenes, diploptene and hop-21-ene (− 40.9 to − 34.7‰) indicate a partial contribution from methane carbon or a chemoautotrophic pathway. Our multi-isotope and biomarker-based conclusions are consistent with previous studies, based only on the elemental composition of bulk sediments, that suggested a mixed marine-terrestrial organic matter origin for these mid-slope sites of the northern Cascadia margin.

  6. Soil organic matter dynamics at the paramo and puna highlands in the Andean mountains

    NASA Astrophysics Data System (ADS)

    Ángeles Muñoz, M.; Faz, Ángel; Mermut, Ahmet R.; Zornoza, Raúl

    2014-05-01

    Mountains and uplands represent the most diverse and fragile ecosystems in the world, cover about 20% of the terrestrial surface and are distributed across all continents and major ecoregions. The Andean Plateau is the main mountain range of the American continent and one of the largest in the world with more than 7,500 km. The soil organic matter is a corner stone in the fertility management of the Andean agriculture as well as in the erosion control. However, its role is still much unknown in these ecosystems. Moreover, the influence of current global climatic change on soil organic C reservoirs and dynamics is still not clearly understood. The aim of this work was to review the soil C dynamics and the implication of the soil organic matter in the fertility management, erosion control, conservation of biodiversity and global climate change to improve the knowledge on the mountain Andean highlands. Climate, landscape, soil C pools, biomass and management were studied. In general, the Andean climate is affected by three main factors: ocean currents, winds and orography characterized by an abrupt topography. The entire Andean belt is segmented into the Northern, Central and Southern Andes. Northern Andes are called paramo and are characterized by humid climate while Central and Southern Andes dryer zones are called puna. Most of the region is tectonically and volcanically active. Sedimentary rocks predominated in the paramo while sedimentary, igneous and metamorphic ones prevailed in the puna. The most common soils were Andosols, Regosols, Umbrisols and Histosols. The cold and wet climate and the low atmospheric pressure favored organic matter accumulation in the soil. The accumulation of organic matter is further enhanced by the formation of organomineral complexes strongly resistant to the microbial breakdown mainly in the paramo. High organic C contents were observed in the paramo (10%) oppositely to the low contents found in the dryer puna (1%). The C/N ratio

  7. 14C and delta13C characteristics of organic matter and carbonate in saltmarsh sediments from south west Scotland.

    PubMed

    MacKenzie, A B; Cook, G T; Barth, J; Gulliver, P; McDonald, P

    2004-05-01

    The distribution of contaminant radionuclides from the Sellafield nuclear fuel reprocessing plant was used to establish chronologies for three saltmarsh sediment cores from south west Scotland. delta(13)C and (14)C analyses indicated that the cores provided a useful archive record of variations in input of organic matter and carbonate. The results imply that prior to major releases of contaminant (14)C from Sellafield, the (14)C specific activity of organic matter in Irish Sea offshore sediments was about 24 Bq kg(-1) C, while that of the carbonate component was below the limit of detection. These results provide baseline data for modelling the uptake of contaminant (14)C by the Irish Sea sediment system. The study confirmed that small(13)C analyses provide a sensitive means of apportioning the origin of saltmarsh organic matter between C(3) terrigenous plants, C(4) terrigenous plants and suspended particulate marine organic matter. For the <2 mm fraction of sediment, a clear pattern of decreasing marine organic input was observed in response to increasing elevation of the marsh surface as a result of sediment accumulation. Bulk sediment, including detrital vegetation, had a dominant input from terrigenous plants. The combined use of delta(13)C and (14)C data revealed that organic matter in the marine organic component of the <2 mm fraction of contemporary surface sediments of the saltmarshes is dominated by recycled old organic material.

  8. Organic matter and heavy metals content modeling in sewage sludge treated with reed bed system

    NASA Astrophysics Data System (ADS)

    Boruszko, Dariusz; Dąbrowski, Wojciech; Malinowski, Paweł

    2017-11-01

    The long process of sludge stabilization (7-15 years) remarkably reduces the organic matter content and causes the process of sludge humifaction. This paper presents the results of using low-cost methods of sludge treatment in the wastewater treatment plant located in Zambrow, Podlaskie Province. The results of studies on the organic matter and heavy metals content in sewage sludge after treatment in a reed bed system are presented. The aim of the research was to evaluate and model organic matter and heavy metals concentrations during sewage stabilization in reed bed lagoons. The lowest concentration, below 1.3 mg/kg DM of the examined seven heavy metals was mercury (Hg). The highest concentration, exceeding 1300 mg/kg DM was zinc (Zn). The obtained results for the heavy metals in sewage sludge from the reed bed lagoons in Zambrow show that the average content of the analyzed heavy metals is approximately 1620 mg/kg DM. The results of the study demonstrate a high efficiency of low-cost methods used in Zambrów WWTP in terms of the quality of the processed sludge. Sewage sludge from the lowest layer of the reed lagoon (12-14 years of dewatering and transformation) is characterized by the lowest organic matter and heavy metals content. The higher a sediment layer lies, i.e. the shorter the time of processing, the higher is the heavy metals content. This indicates a great role of reeds in the accumulation of these compounds.

  9. Palynofacies reveal fresh terrestrial organic matter inputs in the terminal lobes of the Congo deep-sea fan

    NASA Astrophysics Data System (ADS)

    Schnyder, Johann; Stetten, Elsa; Baudin, François; Pruski, Audrey M.; Martinez, Philippe

    2017-08-01

    The Congo deep-sea fan is directly connected to the Congo River by a unique submarine canyon. The Congo River delivers up to 2×1012gPOC/yr, a part of which is funnelled by the submarine canyon and feeds the deep-sea environments. The more distal part of the Congo deep-sea fan, the terminal lobe area, has a surface of 2500 km2 and is situated up to 800 km offshore at depths of 4750-5000 m. It is a remarkable place to study the fate and distribution of the organic matter transferred from the continent to the deep ocean via turbidity currents. Forty-two samples were analyzed from the terminal lobes, including sites from the active channel, one of its levees and an abandoned distal channel. Samples were collected using multitube cores and push-cores using a Victor 6000 ROV, which surveyed the dense chemosynthetic habitats that locally characterize the terminal lobes. Palynofacies reveal a remarkably well-preserved, dominantly terrestrial particulate organic matter assemblage, that has been transferred from the continent into the deep-sea by turbidity currents. Delicate plant structures, cuticle fragments and plant cellular material is often preserved, highlighting the efficiency of turbidity currents to transfer terrestrial organic matter to the sea-floor, where it is preserved. Moreover, the palynofacies data reveal a general sorting by density or buoyancy of the organic particles, as the turbulent currents escaped the active channel, feeding the levees and the more distal, abandoned channel area. Finally, in addition to aforementioned hydrodynamic factors controlling the organic matter accumulation, a secondary influence of chemosynthetic habitats on organic matter preservation is also apparent. Palynofacies is therefore a useful tool to record the distribution of organic matter in recent and ancient deep-sea fan environments, an important topic for both academic and petroleum studies.

  10. Biologically Active Organic Matter in Soils of European Russia

    NASA Astrophysics Data System (ADS)

    Semenov, V. M.; Kogut, B. M.; Zinyakova, N. B.; Masyutenko, N. P.; Malyukova, L. S.; Lebedeva, T. N.; Tulina, A. S.

    2018-04-01

    Experimental and literature data on the contents and stocks of active organic matter in 200 soil samples from the forest-tundra, southern-taiga, deciduous-forest, forest-steppe, dry-steppe, semidesert, and subtropical zones have been generalized. Natural lands, agrocenoses, treatments of long-term field experiments (bare fallow, unfertilized and fertilized crop rotations, perennial plantations), and different layers of soil profile are presented. Sphagnum peat and humus-peat soil in the tundra and forest-tundra zones are characterized by a very high content of active organic matter (300-600 mg C/100 g). Among the zonal soils, the content of active organic matter increases from the medium (75-150 mg C/100 g) to the high (150-300 mg C/100 g) level when going from soddy-podzolic soil to gray forest and dark-gray forest soils and then to leached chernozem. In the series from typical chernozem to ordinary and southern chernozem and chestnut and brown semidesert soils, a decrease in the content of active organic matter to the low (35-75 mg C/100 g) and very low (<35 mg C/100 g) levels is observed. Acid brown forest soil in the subtropical zone is characterized by a medium supply with active organic matter. Most arable soils are mainly characterized by low or very low contents of active organic matter. In the upper layers of soils, active organic matter makes up 1.2-11.1% of total Corg. The profile distribution of active organic matter in the studied soils coincides with that of Corg: their contents appreciably decrease with depth, except for brown semidesert soil. The stocks of active organic matter vary from 0.4 to 5.4 t/ha in the layer of 0-20 cm and from 1.0 to 12.4/ha in the layer of 0-50 cm of different soil types.

  11. Microbial Community Composition of Polyhydroxyalkanoate-Accumulating Organisms in Full-Scale Wastewater Treatment Plants Operated in Fully Aerobic Mode

    PubMed Central

    Oshiki, Mamoru; Onuki, Motoharu; Satoh, Hiroyasu; Mino, Takashi

    2013-01-01

    The removal of biodegradable organic matter is one of the most important objectives in biological wastewater treatments. Polyhydroxyalkanoate (PHA)-accumulating organisms (PHAAOs) significantly contribute to the removal of biodegradable organic matter; however, their microbial community composition is mostly unknown. In the present study, the microbial community composition of PHAAOs was investigated at 8 full-scale wastewater treatment plants (WWTPs), operated in fully aerobic mode, by fluorescence in situ hybridization (FISH) analysis and post-FISH Nile blue A (NBA) staining techniques. Our results demonstrated that 1) PHAAOs were in the range of 11–18% in the total number of cells, and 2) the microbial community composition of PHAAOs was similar at the bacterial domain/phylum/class/order level among the 8 full-scale WWTPs, and dominant PHAAOs were members of the class Alphaproteobacteria and Betaproteobacteria. The microbial community composition of α- and β-proteobacterial PHAAOs was examined by 16S rRNA gene clone library analysis and further by applying a set of newly designed oligonucleotide probes targeting 16S rRNA gene sequences of α- or β-proteobacterial PHAAOs. The results demonstrated that the microbial community composition of PHAAOs differed in the class Alphaproteobacteria and Betaproteobacteria, which possibly resulted in a different PHA accumulation capacity among the WWTPs (8.5–38.2 mg-C g-VSS−1 h−1). The present study extended the knowledge of the microbial diversity of PHAAOs in full-scale WWTPs operated in fully aerobic mode. PMID:23257912

  12. Prolonged acid rain facilitates soil organic carbon accumulation in a mature forest in Southern China.

    PubMed

    Wu, Jianping; Liang, Guohua; Hui, Dafeng; Deng, Qi; Xiong, Xin; Qiu, Qingyan; Liu, Juxiu; Chu, Guowei; Zhou, Guoyi; Zhang, Deqiang

    2016-02-15

    With the continuing increase in anthropogenic activities, acid rain remains a serious environmental threat, especially in the fast developing areas such as southern China. To detect how prolonged deposition of acid rain would influence soil organic carbon accumulation in mature subtropical forests, we conducted a field experiment with simulated acid rain (SAR) treatments in a monsoon evergreen broadleaf forest at Dinghushan National Nature Reserve in southern China. Four levels of SAR treatments were set by irrigating plants with water of different pH values: CK (the control, local lake water, pH ≈ 4.5), T1 (water pH=4.0), T2 (water pH=3.5), and T3 (water pH=3.0). Results showed reduced pH measurements in the topsoil exposed to simulated acid rains due to soil acidification. Soil respiration, soil microbial biomass and litter decomposition rates were significantly decreased by the SAR treatments. As a result, T3 treatment significantly increased the total organic carbon by 24.5% in the topsoil compared to the control. Furthermore, surface soil became more stable as more recalcitrant organic matter was generated under the SAR treatments. Our results suggest that prolonged acid rain exposure may have the potential to facilitate soil organic carbon accumulation in the subtropical forest in southern China. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Correlation of resource plays and biodiversity patterns: accumulation of organic-rich shale tracks taxonomic turnover

    USGS Publications Warehouse

    Eoff, Jennifer D.

    2012-01-01

    Similar paleogeographic and paleotectonic settings characterize most self-sourced shale hydrocarbon plays. Their deposition occurred within similar orders of magnitude of eustatic events and during geologic periods characterized by “warm” (or transitional) climates and calcitic seas. In addition, the stratigraphic occurrence of shale plays parallels certain historical patterns of marine metazoan biodiversity. Such strong agreement among several correlation tools elucidates why these resources may be limited to discrete intervals of geological time. Correlation of self-sourced shale with biodiversity trends indicates that the factors controlling the deposition of marine organic matter may not be independent of those that induced taxonomic turnover. Paleoecological changes promoted accumulation and preservation of Type II kerogen. Deposition of self-sourced shale appears to correspond to reductions in absolute biodiversity and declining percentages of bioturbating taxa, with concomitant increases in proportions of pelagic taxa relative to infaunal and epifaunal organisms. Whereas upwelling and anoxia may have contributed to the deposition of kerogen in source rocks throughout much of the sedimentary record, diminished consumption of biomass by benthic metazoans likely augmented the preservation of organic carbon during deposition of this shale type. Rapid tectonic-plate reconfiguration induced coeval events, creating basins with sufficiently high rates of accommodation creation necessary to preserve additional organic material accumulating as the heterotrophic benthos suffered in response to rapidly changing environments. Combining sea-level curves, paleogeography, climate, and seawater chemistry provides a first-order approximation of the distribution of potential self-sourced shale in the geologic record. A model that predicts the stratigraphic distribution of self-sourced-shale deposition can aid in exploration of continuous hydrocarbon accumulations in self

  14. Non-Destructive High-Resolution Organic Matter Record on Lake Sediment using Steady-State Solid Phase Fluorescence: Organic Matter Quality and Quantity Assessment.

    NASA Astrophysics Data System (ADS)

    Quiers, M.; Perrette, Y.; Etienne, D.; Develle, A. L.; Jacq, K.

    2017-12-01

    The use of organic proxies increases in paleoenvironmental reconstructions from natural archives. Major advances have been achieved by the development of new highly informative molecular proxies usually linked to specific compounds. While studies focused on targeted compounds, offering a high information degree, advances on bulk organic matter are limited. However, this bulk is the main contributor to carbon cycle and has been shown to be a driver of many mineral or organic compounds transfer and record. Development of target proxies need complementary information on bulk organic matter to understand biases link to controlling factors or analytical methods, and provide a robust interpretation. Fluorescence methods have often been employed to characterize and quantify organic matter. However, these technics are mainly developed for liquid samples, inducing material and resolution loss when working on natural archives (either stalagmite or sediments). High-resolution solid phase fluorescence (SPF) was developed on speleothems. This method allows now to analyse organic matter quality and quantity if procedure to constrain the optical density are adopted. In fact, a calibration method using liquid phase fluorescence (LPF) was developed for speleothem, allowing to quantify organic carbon at high-resolution. We report here an application of such a procedure SPF/LPF measurements on lake sediments. In order to avoid sediment matrix effects on the fluorescence signal, a calibration using LPF measurements was realised. First results using this method provided organic matter quality record of different organic matter compounds (humic-like, protein-like and chlorophylle-like compounds) at high resolution for the sediment core. High resolution organic matter fluxes are obtained in a second time, applying pragmatic chemometrics model (non linear models, partial least square models) on high resolution fluorescence data. SPF method can be considered as a promising tool for high

  15. The role of fossil organic matter in the ecosystem development of post-mining sites revealed by isotope analyses

    NASA Astrophysics Data System (ADS)

    Jandova, Katerina; Hyodo, Fujio; Vindušková, Olga; Moradi, Jabbar; Frouz, Jan

    2017-04-01

    Sediments rich in kerogen ( 19 Ma old, 14C-free) are present in the overburden at post-mining area in Western Bohemia, near Sokolov city, the Czech Republic. There are two successional chronosequences, an alder reclamation and spontaneous succession, consisting of sites that differ in time since heaping. Both chronosequences accumulate recent organic matter over time, although the process is initially faster at reclamation. We hypothesized that (i) radiocarbon age of soil organic matter would be decreasing with time since spoil heaping; (ii) the detrital food web would show the assimilation of fossil carbon by heterotrophic organisms in the initial stages of succession when fossil organic matter is the predominant source of carbon; (iii) the isotopic track of fossil organic matter in the detrital food web would be more prominent at sites with lower vegetation cover and litter production. Nitrogen isotopic ratios of soils were high at the young sites and the decrease in δ15N was correlated with the increase in content of recent organic carbon. Nitrogen isotopic ratios of soil detritivores equalled to that of tree leaves at reclamation but were higher at successional sites. Possibly, other food sources were used apart from tree leaves litter at the latter. Interestingly, soil animals but not primary producers were 14C depleted in the youngest relative to the oldest sites. The depletion in 14C of detritivores relative to primary producers was likely due to the geophagy behaviour of the millipedes at the young sites where fossil organic matter is the largest carbon pool.

  16. Organic matter in hydrothermal metal ores and hydrothermal fluids

    USGS Publications Warehouse

    Orem, W.H.; Spiker, E. C.; Kotra, R.K.

    1990-01-01

    Massive polymetallic sulfides are currently being deposited around active submarine hydrothermal vents associated with spreading centers. Chemoautolithotrophic bacteria are responsible for the high production of organic matter also associated with modern submarine hydrothermal activity. Thus, there is a significant potential for organic matter/metal interactions in these systems. We have studied modern and ancient hydrothermal metal ores and modern hydrothermal fluids in order to establish the amounts and origin of the organic matter associated with the metal ores. Twenty-six samples from modern and ancient hydrothermal systems were surveyed for their total organic C contents. Organic C values ranged from 0.01% to nearly 4.0% in these samples. Metal ores from modern and ancient sediment-covered hydrothermal systems had higher organic C values than those from modern and ancient hydrothermal systems lacking appreciable sedimentary cover. One massive pyrite sample from the Galapagos spreading center (3% organic C) had stable isotope values of -27.4% (??13C) and 2.1% (??15N), similar to those in benthic siphonophors from active vents and distinct from seep sea sedimentary organic matter. This result coupled with other analyses (e.g. 13C NMR, pyrolysis/GC, SEM) of this and other samples suggests that much of the organic matter may originate from chemoautolithotrophic bacteria at the vents. However, the organic matter in hydrothermal metal ores from sediment covered vents probably arises from complex sedimentary organic matter by hydrothermal pyrolysis. The dissolved organic C concentrations of hydrothermal fluids from one site (Juan de Fuca Ridge) were found to be the same as that of background seawater. This result may indicate that dissolved organic C is effectively scavenged from hydrothermal fluids by biological activity or by co-precipitation with metal ores. ?? 1990.

  17. Distribution of some organic components in two forest soils profiles with evidence of soil organic matter leaching.

    NASA Astrophysics Data System (ADS)

    Álvarez-Romero, Marta; Papa, Stefania; Lozano-García, Beatriz; Parras-Alcántara, Luis; Coppola, Elio

    2015-04-01

    Soil stores organic carbon more often than we can find in living vegetation and atmosphere together. This reservoir is not inert, but it is constantly in a dynamic phase of inputs and losses. Soil organic carbon mainly depends on land cover, environment conditions and soil properties. After soil deposition, the organic residues of different origin and nature, the Soil Organic Matter (SOM) can be seen involved in two different processes during the pedogenesis: mineralization and humification. The transport process along profile happens under certain conditions such as deposition of high organic residues amount on the top soil, high porosity of the soil caused by sand or skeleton particles, that determine a water strong infiltrating capacity, also, extreme temperatures can slow or stop the mineralization and/or humification process in one intermediate step of the degradation process releasing organic metabolites with high or medium solubility and high loads of water percolating in relation to intense rainfall. The transport process along soil profile can take many forms that can end in the formation of Bh horizons (h means accumulation of SOM in depth). The forest cover nature influence to the quantity and quality of the organic materials deposited with marked differences between coniferous and deciduous especially in relation to resistance to degradation. Two soils in the Campania region, located in Lago Laceno (Avellino - Italy) with different forest cover (Pinus sp. and Fagus sp.) and that meets the requirements of the place and pedological formation suitable for the formation and accumulation of SOM in depth (Bh horizon) were studied. The different soil C fractions were determinated and were assessed (Ciavatta C. et al. 1990; Dell'Abate M.T. et al. 2002) for each soil profile the Total Extractable Lipids (TEL). Furthermore, the lignin were considered as a major component of soil organic matter (SOM), influencing its pool-size and its turnover, due to the high

  18. Abnormal organic-matter maturation in the Yinggehai Basin, South China Sea: Implications for hydrocarbon expulsion and fluid migration from overpressured systems

    USGS Publications Warehouse

    Hao, F.; Li, S.; Dong, W.; Hu, Z.; Huang, B.

    1998-01-01

    Three superimposed pressure systems are present in the Yinggehai Basin, South China Sea. A number of commercial, thermogenic gas accumulations have been found in an area in which shale diapirs occur. Because the reservoir intervals are shallow and very young, they must have filled with gas rapidly. The thick (up to 17 km) Tertiary and Quaternary sedimentary succession is dominated by shales, and is not disrupted by major faulting in the study area, a factor which seems to have had an important effect on both hydrocarbon generation and fluid migration. Organic-matter maturation in the deepest, most overpressured compartment has been significantly retarded as a result of the combined effects of excess pressure, the presence of large volumes of water, and the retention of generated hydrocarbons. This retardation is indicated by both kerogen-related parameters (vitrinite reflectance and Rock-Eval T(max)); and also by parameters based on the analysis of soluble organic matter (such as the C15+ hydrocarbon content, and the concentration of isoprenoid hydrocarbons relative to adjacent normal alkanes). In contrast to this, organic-matter maturation in shallow, normally-pressured strata in the diapiric area has been enhanced by hydrothermal fluid flow, which is clearly not topography-driven in origin. As a result, the hydrocarbon generation 'window' in the basin is considerably wider than could be expected from traditional geochemical modelling. These two unusual and contrasting anomalies in organic-matter maturation, together with other lines of evidence, suggest that there was a closed fluid system in the overpressured compartment until shale diapirs developed. The diapirs developed as a result of the intense overpressuring, and their growth was triggered by regional extensional stresses. They served as conduits through which fluids (both water and hydrocarbons) retained in the closed system could rapidly migrate. Fluid migration led to the modification of the thermal

  19. The influence of algal organic matter produced by Microcystis aeruginosa on coagulation-ultrafiltration treatment of natural organic matter.

    PubMed

    Xu, Jie; Zhao, Yanxia; Gao, Baoyu; Han, Songlin; Zhao, Qian; Liu, Xiaoli

    2018-04-01

    Cyanobacterial bloom causes the release of algal organic matter (AOM), which inevitably affects the treatment processes of natural organic matter (NOM). This study works on treating micro-polluted surface water (SW) by emerging coagulant, namely titanium sulfate (Ti(SO 4 ) 2 ), followed by Low Pressure Ultrafiltration (LPUF) technology. In particular, we explored the respective influence of extracellular organic matter (EOM) and intracellular organic matter (IOM) on synergetic EOM-NOM/IOM-NOM removal, functional mechanisms and subsequent filtration performance. Results show that the IOM inclusion in surface water body facilitated synergic IOM-NOM composite pollutants removal by Ti(SO 4 ) 2 , wherein loosely-aggregated flocs were produced, resulting in floc cake layer with rich porosity and permeability during LPUF. On the contrary, the surface water invaded by EOM pollutants increased Ti(SO 4 ) 2 coagulation burden, with substantially deteriorated both UV 254 -represented and dissolved organic matter (DOC) removal. Corresponded with the weak Ti(SO 4 ) 2 coagulation for EOM-NOM removal was the resultant serious membrane fouling during LPUF procedure, wherein dense cake layer was formed due to the compact structure of flocs. Although the IOM enhanced NOM removal with reduced Ti(SO 4 ) 2 dose and yielded mitigated membrane fouling, larger percentage of irreversible fouling was seen than NOM and EOM-NOM cases, which was most likely due to the substances with small molecular weight, such as microcystin, adhering in membrane pores. This research would provide theoretical basis for dose selection and process design during AOM-NOM water treatment. Copyright © 2018 Elsevier Ltd. All rights reserved.

  20. Self-organization of dissolved organic matter to micelle-like microparticles in river water.

    PubMed

    Kerner, Martin; Hohenberg, Heinz; Ertl, Siegmund; Reckermann, Marcus; Spitzy, Alejandro

    2003-03-13

    In aquatic systems, the concept of the 'microbial loop' is invoked to describe the conversion of dissolved organic matter to particulate organic matter by bacteria. This process mediates the transfer of energy and matter from dissolved organic matter to higher trophic levels, and therefore controls (together with primary production) the productivity of aquatic systems. Here we report experiments on laboratory incubations of sterile filtered river water in which we find that up to 25% of the dissolved organic carbon (DOC) aggregates abiotically to particles of diameter 0.4-0.8 micrometres, at rates similar to bacterial growth. Diffusion drives aggregation of low- to high-molecular-mass DOC and further to larger micelle-like microparticles. The chemical composition of these microparticles suggests their potential use as food by planktonic bacterivores. This pathway is apparent from differences in the stable carbon isotope compositions of picoplankton and the microparticles. A large fraction of dissolved organic matter might therefore be channelled through microparticles directly to higher trophic levels--bypassing the microbial loop--suggesting that current concepts of carbon conversion in aquatic systems require revision.

  1. Evolution of organic matter in Orgueil, Murchison and Renazzo during parent body aqueous alteration: In situ investigations

    NASA Astrophysics Data System (ADS)

    Le Guillou, Corentin; Bernard, Sylvain; Brearley, Adrian J.; Remusat, Laurent

    2014-04-01

    organic and inorganic soluble components. Ultimately, when water was consumed by aqueous alteration reactions or lost from the system, soluble organic compounds accumulated in the immediate vicinity of the precipitated carbonates and phosphates. Additionally, the nanometer scale organic/phyllosilicate relationships provide a petrological environment where some of the initially accreted organic matter could have been modified through clay-mediated reactions.

  2. Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska

    DOE PAGES

    Herndon, Elizabeth M.; Mann, Benjamin F.; Chowdhury, Taniya Roy; ...

    2015-11-23

    Arctic tundra soils store a large quantity of organic carbon that is susceptible to decomposition and release to the atmosphere as methane (CH 4) and carbon dioxide (CO 2) under a warming climate. Anaerobic processes that generate CH 4 and CO 2 remain unclear because previous studies have focused on aerobic decomposition pathways. To predict releases of CO 2 and CH 4 from tundra soils, it is necessary to identify pathways of soil organic matter decomposition under the anoxic conditions that are prevalent in Arctic ecosystems. Here molecular and spectroscopic techniques were used to monitor biological degradation of water-extractable organicmore » carbon (WEOC) during anoxic incubation of tundra soils from a region of continuous permafrost in northern Alaska. Organic and mineral soils from the tundra active layer were incubated at –2, +4, or +8°C for up to 60 days to mimic the short-term thaw season. Results suggest that, under anoxic conditions, fermentation converted complex organic molecules into simple organic acids that were used in concomitant Fe-reduction and acetoclastic methanogenesis reactions. Nonaromatic compounds increased over time as WEOC increased. Organic acid metabolites initially accumulated in soils but were mostly depleted by day 60 because organic acids were consumed to produce Fe(II), CO 2, and CH 4. We conclude that fermentation of nonprotected organic matter facilitates methanogenesis and Fe reduction reactions, and that the proportion of organic acids consumed by methanogenesis increases relative to Fe reduction with increasing temperature. As a result, the decomposition pathways observed in this study are important to consider in numerical modeling of greenhouse gas production in the Arctic.« less

  3. Spatial variation of salt-marsh organic and inorganic deposition and organic carbon accumulation: Inferences from the Venice lagoon, Italy

    NASA Astrophysics Data System (ADS)

    Roner, M.; D'Alpaos, A.; Ghinassi, M.; Marani, M.; Silvestri, S.; Franceschinis, E.; Realdon, N.

    2016-07-01

    inorganic soil content near the edge is due to the preferential deposition of inorganic sediment from the adjacent creek, and to the rapid decomposition of the relatively large biomass production. The higher organic matter content in the inner part of the marsh results from the small amounts of suspended sediment that makes it to the inner marsh, and to the low decomposition rate which more than compensates for the lower biomass productivity in the low-lying inner zones. Finally, the average soil organic carbon density from the LOI measurements is estimated to be 0.044 g C cm-3. The corresponding average carbon accumulation rate for the San Felice and Rigà salt marshes, 132 g C m-2 yr-1, highlights the considerable carbon stock and sequestration rate associated with coastal salt marshes.

  4. Research Highlight: Water-extractable organic matter from sandy loam soils

    USDA-ARS?s Scientific Manuscript database

    Labile organic matter plays important roles in soil health and nutrient cycling because of its dynamic nature. Water-extractable organic matter is part of the soil labile organic matter. In an article recently published in Agricultural & Environmental Letters, researchers report on the level and na...

  5. Response of soil dissolved organic matter to microplastic addition in Chinese loess soil.

    PubMed

    Liu, Hongfei; Yang, Xiaomei; Liu, Guobin; Liang, Chutao; Xue, Sha; Chen, Hao; Ritsema, Coen J; Geissen, Violette

    2017-10-01

    Plastic debris is accumulating in agricultural land due to the increased use of plastic mulches, which is causing serious environmental problems, especially for biochemical and physical properties of the soil. Dissolved organic matter (DOM) plays a central role in driving soil biogeochemistry, but little information is available on the effects of plastic residues, especially microplastic, on soil DOM. We conducted a soil-incubation experiment in a climate-controlled chamber with three levels of microplastic added to loess soil collected from the Loess Plateau in China: 0% (control, CK), 7% (M1) and 28% (M2) (w/w). We analysed the soil contents of dissolved organic carbon (DOC), dissolved organic nitrogen (DON), NH 4 + , NO 3 - , dissolved organic phosphorus (DOP), and PO 4 3- and the activities of fluorescein diacetate hydrolase (FDAse) and phenol oxidase. The higher level of microplastic addition significantly increased the nutrient contents of the DOM solution. The lower level of addition had no significant effect on the DOM solution during the first seven days, but the rate of DOM decomposition decreased in M1 between days 7 and 30, which increased the nutrient contents. The microplastic facilitated the accumulation of high-molecular-weight humic-like material between days 7 and 30. The DOM solutions were mainly comprised of high-molecular-weight humic-like material in CK and M1 and of high-molecular-weight humic-like material and tyrosine-like material in M2. The Microplastic stimulated the activities of both enzymes. Microplastic addition thus stimulated enzymatic activity, activated pools of organic C, N, and P, and was beneficial for the accumulation of dissolved organic C, N and P. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Matrix protected organic matter in a river dominated margin: A possible mechanism to sequester terrestrial organic matter?

    NASA Astrophysics Data System (ADS)

    Mead, Ralph N.; Goñi, Miguel A.

    2008-06-01

    The provenance of organic matter in surface sediments from the northern Gulf of Mexico was investigated by analyzing the compositions of lipid biomarkers ( n-alkanes, fatty acids, sterols) liberated after a series of chemical treatments designed to remove different organo-mineral matrix associations (i.e. freely extractable, base-hydrolyzable, unhydrolyzable). Bulk analyses of the organic matter (carbon content, carbon:nitrogen ratios, stable and radiocarbon isotopic analyses) were also performed on the intact sediments and their non-hydrolyzable, demineralized residue. We found recognizable lipids from distinct sources, including terrestrial vascular plants, bacteria and marine algae and zooplankton, within each of the isolated fractions. Based on the lipid signatures and bulk compositions, the organic matter within the unhydrolyzable fractions appeared to be the most diagenetically altered, was the oldest in age, and had the highest abundance of terrigenous lipids. In contrast, the base-hydrolyzable fraction was the most diagentically unaltered, had the youngest ages and was most enriched in N and marine lipids. Our results indicate that fresh, autochthonous organic matter is the most important contributor to base-hydrolyzable lipids, whereas highly altered allochthonous sources appear to be predominant source of unhydrolyzable lipids in the surface sediments from the Atchafalaya River shelf. Overall, the lipid biomarker signatures of intact sediments were biased towards the autochthonous source because many of the organic compounds indicative of degraded, terrigenous sources were protected from extraction and saponification by organo-mineral matrices. It is only after these protective matrices were removed by treatment with HCl and HF that these compounds became evident.

  7. Examining the relationship between mercury and organic matter in lake sediments along a latitudinal transect in subarctic Canada

    NASA Astrophysics Data System (ADS)

    Galloway, Jennifer M.; Sanei, Hamed; Parsons, Michael; Swindles, Graeme T.; Macumber, Andrew L.; Patterson, R. Timothy; Palmer, Michael; Falck, Hendrik

    2016-04-01

    The accumulation of Hg in aquatic environments at both high and low latitudes can be controlled by organic matter through algal scavenging, thus complicating the interpretation of historical Hg profiles in lake sediments1,2,3. However, other recent studies suggest that algal scavenging is not important in governing Hg flux to sediments4, in some cases because of dilution by inorganic materials5. This study examines relationships between Hg and organic matter (OM) in over 100 lakes located between 60.5 and 65.4 °N and crossing the latitudinal tree-line in subarctic Canada. The latitudinal gradient approach in our study offers an opportunity to better understand climate and environmental controls on OM accumulation and its role in influencing Hg deposition in subarctic lacustrine environments. We used Rock Eval 6 pyrolysis to determine total organic carbon (TOC%), S1 (soluble OM consisting of degradable lipids and algal pigments), S2 (OM derived from highly aliphatic biomacromolecule structure of algal cell walls), and S3 (OM dominated by carbohydrates, lignins, and plant materials). Total Hg in sediments was measured using thermal decomposition, amalgamation, and atomic absorption spectrophotometry. In these lake sediments, S2 composes the majority of TOC (Pearson's r = 0.978, p<0.01) and is negatively correlated with latitude (r = -0.475, p<0.01). S1 and TOC are also negatively correlated with latitude (r = -0.237 and -0.452, respectively, p<0.01). These associations are interpreted to reflect less autochthonous OM production and proportionally higher allochthonous OM input to more northern lakes (oxygen index vs. latitude r = 0.371, p<0.01). Similar to previous studies1,2,3 Mercury displays a significant positive association with S1 (r = 0.556, p<0.01), S2 (r = 0.518, p<0.01), and TOC (r = 0.504, p<0.01),supporting the hypothesis that OM influences Hg accumulation in subarctic lake sediments. References 1Sanei, H., Goodarzi, F. 2006. Relationship between organic

  8. Lack of enhanced preservation of organic matter in sediments under the oxygen minimum on the Oman Margin

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Pedersen, T.F.; Shimmield, G.B.; Price, N.B.

    1992-01-01

    The impingement of oxygen minima on continental margins is widely thought to promote the accumulation of sedimentary facies enriched in well-preserved organic matter. It is shown here, however, that such a relationship does not clearly apply to the productive Oman Margin in the Arabian Sea, which hosts one of the most severe oxygen minima in the oceans. Measurements made on the 0-1 cm depth interval from fourteen box cores collected from the outer shelf-upper continental slope area off Oman show that (1) deposited organic matter is overwhelmingly of marine origin, (2) there is no significant correlation between the abundance ofmore » sedimentary organic carbon (C{sub org}) and the bottom-water O{sub 2} concentration, (3) there is no relation between the sedimentary C{sub org}:N ratio and bottom-water O{sub 2}, and (4) there is no correlation between the hydrogen index (HI) of the organic matter and bottom water oxygen. There are, however, significant correlations between the C{sub org}:N ratio and the I:C{sub org}, Cr:Al, and Zr:Al ratios, as well as between the C{sub org}:N ratio and the hydrogen index. Overall, these data suggest that the bottom water oxygen concentration has little effect in governing either the distribution of the degree of preservation of organic matter on this margin. Thus, the generally high but spatially variable C{sub org} content of the sediments on the Oman Margin may not reflect the occurrence of an oxygen minimum but instead be the result of a high settling flux of organic matter, supported by monsoon-driven upwelling, and post-depositional redistribution of the organic material by hydrodynamic influences.« less

  9. Natural organic matter properties in Swedish agricultural streams

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Kyllmar, Katarina; Bergström, Lars; Köhler, Stephan

    2016-04-01

    We have analysed natural organic matter (NOM) properties in 18 agricultural streams in Sweden covering a broad range of environmental (climate, soil type), land use and water quality (nutrient and concentrations, pH, alkalinity) characteristics. Stream water samples collected every two weeks within an ongoing Swedish Monitoring Programme for Agriculture have been analysed for total/dissolved organic carbon, absorbance and fluorescence spectroscopy. A number of quantitative and qualitative spectroscopic parameters was calculated to help to distinguish between terrestrially-derived, refractory organic material and autochthonous, labile material indicative of biogeochemical transformations of terrestrial NOM and recent biological production. The study provides insights into organic matter properties and carbon budgets in agricultural streams and improves understanding of how agricultural catchments transform natural and anthropogenic fluxes of organic matter and nutrients to signals observed in receiving waters.

  10. Dry matter and nitrogen accumulation are not affected by superoptimal concentration of ammonium in flowing solution culture with pH control

    NASA Technical Reports Server (NTRS)

    Rideout, J. W.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

    1994-01-01

    While it is known that superoptimal concentrations of the nitrate (NO3-) ion in solution culture do not increase NO3- uptake or dry matter accumulation, the same is not known for the ammonium (NH4+) ion. An experiment was conducted utilizing flowing solution culture with pH control to investigate the influence of superoptimal NH4+ concentrations on dry matter, nitrogen (N), potassium (K), calcium (Ca), and magnesium (Mg) accumulation by nonnodulated soybean plants. Increasing the NH4+ concentration in solution from 1 to 10 mM did not affect dry matter or N accumulation. Accumulations of K, Ca, and Mg were slightly decreased with increased NH4+ concentration. The NH4+ uptake system, which is saturated at less than 1mM NH4+, is able to regulate uptake of NH4+ at concentrations as high as 10 mM.

  11. Impact of natural organic matter and increased water hardness on DGT prediction of copper bioaccumulation by yellow lampmussel (Lampsilis cariosa) and fathead minnow (Pimephales promelas).

    PubMed

    Philipps, Rebecca R; Xu, Xiaoyu; Mills, Gary L; Bringolf, Robert B

    2018-06-01

    We conducted an exposure experiment with Diffusive Gradients in Thin- Films (DGT), fathead minnow (Pimephales promelas), and yellow lampmussel (Lampsilis cariosa) to estimate bioavailability and bioaccumulation of Cu. We hypothesized that Cu concentrations measured by DGT can be used to predict Cu accumulation in aquatic animals and alterations of water chemistry can affect DGT's predict ability. Three water chemistries (control soft water, hard water, and addition of natural organic matter (NOM)) and three Cu concentrations (0, 30, and 60 μg/L) were selected, so nine Cu-water chemistry combinations were used. NOM addition treatments resulted in decreased concentrations of DGT-measured Cu and free Cu ion predicted by Biotic Ligand Model (BLM). Both hard water and NOM addition treatments had reduced concentrations of Cu ion and Cu-dissolved organic matter complexes compared to other treatments. DGT-measured Cu concentrations were linearly correlated to fish accumulated Cu, but not to mussel accumulated Cu. Concentrations of bioavailable Cu predicted by BLM, the species complexed with biotic ligands of aquatic organisms and, was highly correlated to DGT-measured Cu. In general, DGT-measured Cu fit Cu accumulations in fish, and this passive sampling technique is acceptable at predicting Cu concentrations in fish in waters with low NOM concentrations. Copyright © 2018 Elsevier Ltd. All rights reserved.

  12. GROUNDWATER TRANSPORT OF HYDROPHOBIC ORGANIC COMPOUNDS IN THE PRESENCE OF DISSOLVED ORGANIC MATTER

    EPA Science Inventory

    The effects of dissolved organic matter (DOM) on the transport of hydrophobic organic compounds in soil columns were investigated. Three compounds (naphthalene, phenanthrene and DDT) that spanned three orders of magnitude in water solubility were used. Instead of humic matter, mo...

  13. Opposing effects of different soil organic matter fractions on crop yields.

    PubMed

    Wood, Stephen A; Sokol, Noah; Bell, Colin W; Bradford, Mark A; Naeem, Shahid; Wallenstein, Matthew D; Palm, Cheryl A

    2016-10-01

    Soil organic matter is critical to sustainable agriculture because it provides nutrients to crops as it decomposes and increases nutrient- and water-holding capacity when built up. Fast- and slow-cycling fractions of soil organic matter can have different impacts on crop production because fast-cycling fractions rapidly release nutrients for short-term plant growth and slow-cycling fractions bind nutrients that mineralize slowly and build up water-holding capacity. We explored the controls on these fractions in a tropical agroecosystem and their relationship to crop yields. We performed physical fractionation of soil organic matter from 48 farms and plots in western Kenya. We found that fast-cycling, particulate organic matter was positively related to crop yields, but did not have a strong effect, while slower-cycling, mineral-associated organic matter was negatively related to yields. Our finding that slower-cycling organic matter was negatively related to yield points to a need to revise the view that stabilization of organic matter positively impacts food security. Our results support a new paradigm that different soil organic matter fractions are controlled by different mechanisms, potentially leading to different relationships with management outcomes, like crop yield. Effectively managing soils for sustainable agriculture requires quantifying the effects of specific organic matter fractions on these outcomes. © 2016 by the Ecological Society of America.

  14. Geochemical controls on vanadium accumulation in fossil fuels

    USGS Publications Warehouse

    Breit, G.N.; Wanty, R.B.

    1989-01-01

    High vanadium contents in petroleum and other fossil fuels have been attributed to organic-matter type, organisms, volcanic emanations, diffusion of sea water, and epigenetic enrichment. However, these factors are inadequate to account for the high abundance of vanadium in some fossil fuels and the paucity in others. By examining vanadium deposits in sedimentary rocks with sparse organic matter, constraints are placed on processes controlling vanadium accumulation in organic-rich sediments. Vanadium, as vanadate (V(V)), entered some depositional basins in oxidizing waters from dry, subaerial environments. Upon contact with organic matter in anoxic waters, V(V) is reduced to vanadyl (V(IV)), which can be removed from the water column by adsorption. H2S reduces V(IV) to V(III), which hydrolyzes and precipitates. The lack of V(III) in petroleum suggests that reduction of V(IV) to V(III) is inhibited by organic complexes. In the absence of strong complexing agents, V(III) forms and is incorporated in clay minerals.

  15. Geochemical controls of vanadium accumulation in fossil fuels

    USGS Publications Warehouse

    Breit, G.N.; Wanty, R.B.

    1989-01-01

    High vanadium contents in petroleum and other fossil fuels have been attributed to organic-matter type, organisms, volcanic emanations, diffusion of sea water, and epigenetic enrichment. However, these factors are inadequate to account for the high abundance of vanadium in some fossil fuels and the paucity in others. By examining vanadium deposits in sedimentary rocks with sparse organic matter, constraints are placed on processes controlling vanadium accumulation in organic-rich sediments. Vanadium, as vanadate (V(V)), entered some depositional basins in oxidizing waters from dry, subaerial environments. Upon contact with organic matter in anoxic waters, V(V) is reduced to vanadyl (V(IV)), which can be removed from the water column by adsorption. H2S reduces V(IV) to V(III), which hydrolyzes and precipitates. The lack of V(III) in petroleum suggests that reduction of V(IV) to V(III) is inhibited by organic complexes. In the absence of strong complexing agents, V(III) forms and is incorporated in clay minerals.

  16. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls

    NASA Astrophysics Data System (ADS)

    Kallenbach, Cynthia M.; Frey, Serita D.; Grandy, A. Stuart

    2016-11-01

    Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes produce chemically diverse, stable SOM. We show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.

  17. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls.

    PubMed

    Kallenbach, Cynthia M; Frey, Serita D; Grandy, A Stuart

    2016-11-28

    Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes produce chemically diverse, stable SOM. We show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.

  18. Defining organic matter quality in sediment systems: a suggested classification scheme

    NASA Astrophysics Data System (ADS)

    Alderson, Danielle; Evans, Martin; Rothwell, James; Boult, Stephen

    2015-04-01

    The quantity and quality of the mineral component of sediments is a core focus of sedimentological investigation in terrestrial systems. This is not to say that the organic component of collected sediments is simply ignored; the organic component is often scrutinised, but in some fields in a restricted manner, limited to basic characteristics such as the ratio of organic to mineral content derived from loss on ignition. There is no doubt that this information is useful; however, these types of analysis indicate the quantity of organic matter relative to a particular temporal scale or volume, rather than treating the organic fraction as a separate entity worthy of substantial investigation. The quality of the organic component is being increasingly considered in a number of fields, with molecular, thermal, spectroscopic and bulk methods being used. However, models and theories on organic matter processing in a variety of environmental systems, have been developed without clearly defining organic matter quality, because most results do not depend on an outright measure of quality (Bosatta and Agren, 1999). With approaches and techniques varying between fields, there is a need to consider a more systematic approach to the analysis and definition of organic matter quality. The disparities in the definition of the quality of organic matter, and thus how it may be measured have vital implications for the study of carbon cycling, biogeochemical processing, and ultimately ecosystem structure and function. The quality and quantity of organic matter have an influence on the chemistry and biology of systems and may reveal a wealth of past or contemporary environmental information. In this paper we provide a classification of organic matter quality and examples of potential applications and suitable techniques for the analysis of the main classes of organic matter character. A more consistent approach to organic matter characterisation has the potential to aid understanding of

  19. The role of large wood in retaining fine sediment, organic matter and plant propagules in a small, single-thread forest river

    NASA Astrophysics Data System (ADS)

    Osei, Nana A.; Gurnell, Angela M.; Harvey, Gemma L.

    2015-04-01

    This paper investigates associations among large wood accumulations, retained sediment, and organic matter and the establishment of a viable propagule bank within a forested reach of a lowland river, the Highland Water, UK. A wood survey within the 2-km study reach, illustrates that the quantity of wood retained within the channel is typical of relatively unmanaged river channels bordered by deciduous woodland and that the wood accumulations (jams) that are present are well developed, typically spanning the river channel and comprised of wood that is well decayed. Sediment samples were obtained in a stratified random design focusing on nine subreaches within which samples were aggregated from five different types of sampling location. Two of these locations were wood-associated (within and on bank faces immediately adjacent to wood jams), and the other three locations represented the broader river environment (gravel bars, bank faces, floodplain). The samples were analysed to establish their calibre, organic, and viable plant propagule content. The gravel bar sampling locations retained significantly coarser sediment containing a lower proportion of organic matter and viable propagules than the other four sampling locations. The two wood-related sampling locations retained sediment of intermediate calibre between the gravel bar and the bank-floodplain samples but they retained significantly more organic matter and viable propagules than were found in the other three sampling locations. In particular, the jam bank samples (areas of sediment accumulation against bank faces adjacent to wood jams) contained the highest number of propagules and the largest number of propagule species. These results suggest that retention of propagules, organic matter and relatively fine sediment in and around wood jams has the potential to support vegetation regeneration, further sediment retention, and as a consequence, landform development within woodland streams, although this

  20. Organic carbon accumulation and preservation in surface sediments on the Peru margin

    USGS Publications Warehouse

    Arthur, M.A.; Dean, W.E.; Laarkamp, K.

    1998-01-01

    Concentrations and characteristics of organic matter in surface sediments deposited under an intense oxygen-minimum zone on the Peru margin were studied in samples from deck-deployed box cores and push cores acquired by submersible on two transects spanning depths of 75 to 1000 m at 12??and 13.5??S. The source of organic matter to the seafloor in these areas is almost entirely marine material as confirmed by the narrow range of ??13C of organic carbon obtained in the present study (-20.3 to -21.6???; PDB) and the lack of any relationship between pyrolysis hydrogen index and carbon isotope composition. Organic carbon contents are highest (up to 16%) on the slope at depths between 75 and 350 m in sediments deposited under intermediate water masses with low dissolved oxygen concentrations (< 5 ??mol/kg). Even at these low concentrations of dissolved oxygen, however, the surface sediments that were recovered from these depths are dominantly unlaminated. Strong currents (up to 30 cm/s) associated with the poleward-flowing Peru Undercurrent were measured at depths between 160 and 300 m on both transects. The seafloor in this range of water depths is characterized by bedforms stabilized by bacterial mats, extensive authigenic mineral crusts, and (or) thick organic flocs. Constant advection of dissolved oxygen, although in low concentrations, active resuspension of surficial organic matter, activity of organisms, and transport of fine-grained sediment to and from more oxygenated zones all contribute to greater degradation and poorer initial preservation of organic matter than might be expected under oxygen-deficient conditions. Dissolved-oxygen concentrations ultimately may be the dominant affect on organic matter characteristics, but reworking of fine-grained sediment and organic matter by strong bottom currents and redeposition on the seafloor in areas of lower energy also exert important controls on organic carbon concentration and degree of oxidation in this region.

  1. Exploring Patterns of Soil Organic Matter Decomposition with Students and the Public Through the Global Decomposition Project (GDP)

    NASA Astrophysics Data System (ADS)

    Wood, J. H.; Natali, S.

    2014-12-01

    The Global Decomposition Project (GDP) is a program designed to introduce and educate students and the general public about soil organic matter and decomposition through a standardized protocol for collecting, reporting, and sharing data. This easy-to-use hands-on activity focuses on questions such as "How do environmental conditions control decomposition of organic matter in soil?" and "Why do some areas accumulate organic matter and others do not?" Soil organic matter is important to local ecosystems because it affects soil structure, regulates soil moisture and temperature, and provides energy and nutrients to soil organisms. It is also important globally because it stores a large amount of carbon, and when microbes "eat", or decompose organic matter they release greenhouse gasses such as carbon dioxide and methane into the atmosphere, which affects the earth's climate. The protocol describes a commonly used method to measure decomposition using a paper made of cellulose, a component of plant cell walls. Participants can receive pre-made cellulose decomposition bags, or make decomposition bags using instructions in the protocol and easily obtained materials (e.g., window screen and lignin-free paper). Individual results will be shared with all participants and the broader public through an online database. We will present decomposition bag results from a research site in Alaskan tundra, as well as from a middle-school-student led experiment in California. The GDP demonstrates how scientific methods can be extended to educate broader audiences, while at the same time, data collected by students and the public can provide new insight into global patterns of soil decomposition. The GDP provides a pathway for scientists and educators to interact and reach meaningful education and research goals.

  2. Organic matter content and particle size modifications in mangrove sediments as responses to sea level rise.

    PubMed

    Sanders, Christian J; Smoak, Joseph M; Waters, Mathew N; Sanders, Luciana M; Brandini, Nilva; Patchineelam, Sambasiva R

    2012-06-01

    Mangroves sediments contain large reservoirs of organic material (OM) as mangrove ecosystems produce large quantities and rapidly burial OM. Sediment accumulation rates of approximately 2.0 mm year(-1), based on (210)Pb(ex) dating, were estimated at the margin of two well-developed mangrove forest in southern Brazil. Regional data point to a relative sea level (RSL) rise of up to ∼4.0 mm year(-1). This RSL rise in turn, may directly influence the origin and quantity of organic matter (OM) deposited along mangrove sediments. Lithostratigraphic changes show that sand deposition is replacing the mud (<63 μm) fraction and OM content is decreasing in successively younger sediments. Sediment accumulation in coastal areas that are not keeping pace with sea level rise is potentially conducive to the observed shifts in particle size and OM content. Copyright © 2012 Elsevier Ltd. All rights reserved.

  3. Stabilization of polar soils organic matter: insights from 13-C NMR and ESR spectroscopy

    NASA Astrophysics Data System (ADS)

    Abakumov, Evgeny

    2017-04-01

    Polar soils play a key role in the global carbon balance, as they contain maximum stocks of soil organic matter (SOM) within the whole pedosphere. Low temperature and severe conditions provides the accumulation of large amounts of organic matter in permafrost soils over thousands of years. The quality and composition of organic matter of polar soils is underestimated. In order to better understand the implication of permafrost SOM to greenhouse gas emissions, an accurate knowledge of its spatial distribution, both in terms of quantity and quality (i.e. biodegradability, chemical composition and humification degree) is needed. The chemical composition of SOM determines its decomposability and, therefore, it determines the rate at which carbon may be transferred from soils to the atmosphere under warming conditions. Biodegradability of SOM has been related to humification degree, as more advanced stages in the humification process imply a depletion of the labile molecules, as well as an increase in the bulk aromaticity, which provides a higher stability of the SOM. Soils from Antarctic and different sectors of Arctic biome were investigated by 13-C NMR and electron spin resonance spectroscopy. It was shown, that the characteristic feature of polar soils humic acids is the dominance of aliphatic compounds on the aromatic one. This is related to the humification precursors component composition, namely to dominance of the remnants of lower plants, especially in Antarctic and low period of biological activity, which regulates the humification rate. Humic acids of Antarctic and various Arctic soils show the portion of aromatic components not more than 30 %. ESR spectroscopy shown that the concentration of free radicals is proportional to the humic acids stabilization degree. Less humified organic materials show the highest portion of free radical content, while the most developed soils and buried organic layers show decreased contents of free radicals. The database on

  4. Pools and fluxes of organic matter in a boreal landscape: implications for a safety assessment of a repository for nuclear waste.

    PubMed

    Kumblad, Linda; Söderbäck, Björn; Löfgren, Anders; Lindborg, Tobias; Wijnbladh, Erik; Kautsky, Ulrik

    2006-12-01

    To provide information necessary for a license application for a deep repository for spent nuclear fuel, the Swedish Nuclear Fuel and Waste Management Co is carrying out site investigations, including extensive studies of different parts of the surface ecosystems, at two sites in Sweden. Here we use the output from detailed modeling of the carbon dynamics in the terrestrial, limnic and marine ecosystems to describe and compare major pools and fluxes of organic matter in the Simpevarp area, situated on the southeast coast of Sweden. In this study, organic carbon is used as a proxy for radionuclides incorporated into organic matter. The results show that the largest incorporation of carbon into living tissue occurs in terrestrial catchments. Carbon is accumulated in soil or sediments in all ecosystems, but the carbon pool reaches the highest values in shallow near-land marine basins. The marine basins, especially the outer basins, are dominated by large horizontal water fluxes that transport carbon and any associated contaminants into the Baltic Sea. The results suggest that the near-land shallow marine basins have to be regarded as focal points for accumulation of radionuclides in the Simpevarp area, as they receive a comparatively large amount of carbon as discharge from terrestrial catchments, having a high NPP and a high detrital accumulation in sediments. These focal points may constitute a potential risk for exposure to humans in a future landscape as, due to post-glacial land uplift, previous accumulation bottoms are likely to be used for future agricultural purposes.

  5. Radio Frequency Sensing of Particulate Matter Accumulation on a Gasoline Particulate Filter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Parks, James; Prikhodko, Vitaly Y.; Sappok, Alex

    Filter Sensing Technology’s radio frequency (RF) sensor for particulate filter on-board diagnostics (OBD) was studied on a lean gasoline engine at the National Transportation Research Center (NTRC) at Oak Ridge National Laboratory (ORNL). The response of the RF sensor to particulate matter (PM) or “soot” accumulation on the gasoline particulate filter (GPF) installed in the engine exhaust was evaluated. In addition, end plugs of the GPF were purposely removed, and subsequent changes to the RF sensor measured soot loading on the GPF were characterized. Results from the study showed that the RF sensor can accurately measure soot accumulation on amore » GPF; furthermore, the predicted decreased soot accumulation due to plug removal was detected by the RF sensor. Overall, the studies were short and preliminary in nature; however, clearly, the RF sensor demonstrated the capability of measuring GPF soot loading at a level suitable for use in lean gasoline engine emission control OBD and control.« less

  6. Influence of anoxic pore water dissolved organic matter on the fate and transport of hydrophobic organic pollutants

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hunchak-Kariouk, K.

    1992-01-01

    Pore water dissolved organic matter is an overlooked pool of organic matter important to the environmental fate of hydrophobic organic pollutants. The association of polychlorinated biphenyls, polyaromatic hydrocarbons and chlorinated pesticides with pore water dissolved organic matter influences their distribution and mobility within the bottom sediment environment. Steep physical, biological and chemical gradients at the sediment/water interface isolate the pore water and create unique conditions within the sediment. This study indicates that any disturbance of this environment will alter the distribution and mobility of organic pollutants by changing their association to the pore water dissolved organic matter. A small volumemore » closed equilibration method was developed to measure the solubility enhancement of 2,2' 4,4'-tetrachlorobiphenyl (TeCB) by natural dissolved organic matter. Chemical coated micro-glass beads were equilibrated with anoxic and laboratory aerated (oxic) pore water samples in flame sealed ampules. The TeCB enhanced solubilities were used to determine the pore water dissolved organic matter partition coefficient, K[sub pwdom]. The measured TeCB solubility and K[sub pwdom] were much smaller for anoxic than oxic pore waters. The dissolved organic matter sorptive capacity for the TeCB increased as the water was aerated. This change is attributed to coagulative fractionation and structural changes of the pore water dissolved organic matter during aeration and was characterized by differences in the dissolved organic matter concentration, UV absorption at 254 nm, interfacial surface tension, and sorption capacity of molecular weight fractions of anoxic and oxic pore water dissolved organic matter. The increase in partitioning indicates that there will be an increase in the mobility of the TeCB as an anoxic bottom sediment environment is disturbed and aerated.« less

  7. High dimensional reflectance analysis of soil organic matter

    NASA Technical Reports Server (NTRS)

    Henderson, T. L.; Baumgardner, M. F.; Franzmeier, D. P.; Stott, D. E.; Coster, D. C.

    1992-01-01

    Recent breakthroughs in remote-sensing technology have led to the development of high spectral resolution imaging sensors for observation of earth surface features. This research was conducted to evaluate the effects of organic matter content and composition on narrowband soil reflectance across the visible and reflective infrared spectral ranges. Organic matter from four Indiana agricultural soils, ranging in organic C content from 0.99 to 1.72 percent, was extracted, fractionated, and purified. Six components of each soil were isolated and prepared for spectral analysis. Reflectance was measured in 210 narrow bands in the 400- to 2500-nm wavelength range. Statistical analysis of reflectance values indicated the potential of high dimensional reflectance data in specific visible, near-infrared, and middle-infrared bands to provide information about soil organic C content, but not organic matter composition. These bands also responded significantly to Fe- and Mn-oxide content.

  8. Organic matter composition and macrofaunal diversity in sediments of the Condor Seamount (Azores, NE Atlantic)

    NASA Astrophysics Data System (ADS)

    Bongiorni, Lucia; Ravara, Ascensão; Parretti, Paola; Santos, Ricardo S.; Rodrigues, Clara F.; Amaro, Teresa; Cunha, Marina R.

    2013-12-01

    In recent years increasing knowledge has been accumulated on seamounts ecology; however their sedimentary environments and associated biological communities remain largely understudied. In this study we investigated quantity and biochemical composition of organic matter and macrofaunal diversity in sediments of the Condor Seamount (NE Atlantic, Azores). In order to test the effect of the seamount on organic matter distribution, sediment samples were collected in 6 areas: the summit, the northern and southern flanks and bases, and in an external far field site. Macrofauna abundance and diversity were investigated on the summit, the southern flank and in the far field site. The organic matter distribution reflected the complex hydrodynamic conditions occurring on the Condor. Concentrations of organic matter compounds were generally lower on the whole seamount than in the far field site and on the seamount summit compared to flanks and bases. A clear difference was also evident between the northern and southern slopes of the Condor, suggesting a role of the seamount in conditioning sedimentation processes and distribution of food resources for benthic consumers. Macrofauna assemblages changed significantly among the three sampling sites. High abundance and dominance, accompanied by low biodiversity, characterized the macrofauna community on the Condor summit, while low dominance and high biodiversity were observed at the flank. Our results, although limited to five samples on the seamount and two off the seamount, do not necessarily support the paradigm that seamounts are more biodiverse than the surrounding seafloor. However, the abundance (and biomass), functional diversity and taxonomical distinctiveness of the macrofaunal assemblages from the Condor Seamount suggest that seamounts habitats may play a relevant role in adding to the regional biodiversity.

  9. Adsorption of natural dissolved organic matter at the oxide/water interface

    USGS Publications Warehouse

    Davis, James A.

    1982-01-01

    Natural organic matter is readily adsorbed by alumina and kaolinite in the pH range of natural waters. Adsorption occurs by complex formation between surface hydroxyls and the acidic functional groups of the organic matter. Oxides with relatively acidic surface hydroxyls, e.g. silica, do not react strongly with the organic matter. Under conditions typical for natural waters, almost complete surface coverage by adsorbed organic matter may be expected for alumina, hydrous iron oxides and the edge sites of aluminosilicates. Potentiometric titration and electrophoresis indicate that most of the acidic functional groups of the adsorbed organic matter are neutralized by protons from solution. The organic coating is expected to have a great influence on subsequent adsorption of inorganic cations and anions.

  10. Influence of water chemistry and natural organic matter on active and passive uptake of inorganic mercury by gills of rainbow trout (Oncorhynchus mykiss).

    PubMed

    Klinck, Joel; Dunbar, Michael; Brown, Stephanie; Nichols, Joel; Winter, Anna; Hughes, Christopher; Playle, Richard C

    2005-03-25

    To distinguish physiologically regulated uptake from passive uptake of inorganic Hg in fish, rainbow trout (Oncorhynchus mykiss) were exposed to inorganic Hg (0.5, 1, or 2 microM total Hg) in ion-poor water with various treatments. Addition of ions to the water (mM concentrations of Ca, K, Cl) did not consistently alter Hg accumulation by trout gills, although there was a trend to higher Hg accumulation at higher ion concentrations. The apical Ca channel blockers Verapamil and lanthanum also did not consistently affect Hg accumulation by trout gills. Pre-treatment of trout with the Na channel blocker Phenamil decreased Hg uptake by about half. These results suggest a combination of physiologically regulated and passive uptake of Hg by trout gills. Strong complexing agents of Hg (EDTA, NTA, ethylenediamine, cysteine) decreased Hg-binding by trout gills in a dose-dependent manner. From these data, a conditional equilibrium binding constant for Hg to the gills was estimated as logK(Hg-gill) = 18.0, representing very strong binding of Hg to the gills. This value is a first step in creating a biotic ligand model (BLM) for inorganic Hg and fish. Natural organic matter (2-10 mg C/L) also decreased Hg-binding by trout gills, although mM concentrations of Na, K, and Cl interfered with this effect. At low concentrations of these ions, natural organic matter samples isolated from various sources bound Hg to similar degrees, as judged by Hg accumulation by trout gills. A conditional binding constant to natural organic matter (NOM) was estimated as logK(Hg-NOM) = 18.0 with about 0.5 micromol binding sites per mg C, representing strong binding of Hg to NOM.

  11. Organic carbon accumulation in Brazilian mangal sediments

    NASA Astrophysics Data System (ADS)

    Sanders, Christian J.; Smoak, Joseph M.; Sanders, Luciana M.; Sathy Naidu, A.; Patchineelam, Sambasiva R.

    2010-12-01

    This study reviews the organic carbon (OC) accumulation rates in mangrove forests, margins and intertidal mudflats in geographically distinct areas along the Brazilian coastline (Northeastern to Southern). Our initial results indicate that the mangrove forests in the Northeastern region of Brazil are accumulating more OC (353 g/m 2/y) than in the Southeastern areas (192 g/m 2/y) being that the sediment accumulation rates, 2.8 and 2.5 mm/y, and OC content ˜7.1% and ˜5.8% (dry sediment weight) were contributing factors to the discrepancies between the forests. The intertidal mudflats on the other hand showed substantially greater OC accumulation rates, sedimentation rates and content 1129 g/m 2/y and 234 g/m 2/y; 7.3 and 3.4 mm/y; 10.3% and ˜2.7% (OC of dry sediment weight content), respectively, in the Northeastern compared to the Southeastern region. Mangrove forests in the South-Southeastern regions of Brazil may be more susceptible to the rising sea level, as they are geographically constricted by the vast mountain ranges along the coastline.

  12. Photochemical behavior of dissolved and colloidal organic matter in estuarine and oceanic waters.

    PubMed

    Zhu, Wen-Zhuo; Yang, Gui-Peng; Zhang, Hong-Hai

    2017-12-31

    Chromophoric dissolved organic matter (CDOM), carbohydrates, and amino acids were analyzed to investigate the photochemistry of total dissolved (<0.22μm) organic matter (DOM), high-molecular-weight (HMW, 1kDa-0.22μm) DOM and low-molecular-weight (LMW, <1kDa) DOM at stations in the Yangtze River and its coastal area, and in the Western Pacific Ocean. Results revealed that the humic-like and tryptophan-like CDOM fluorescent components in riverine, coastal, and oceanic surface waters were photodegraded during irradiation. However, the photochemical behavior of tyrosine-like component was obscured by the excessive fluorescence intensities of humic- and tryptophan-like fluorescent components. Light sensitivity varied depending on the source material; terrestrially derived DOM was more susceptible to irradiation than autochthonous DOM. In contrast to the expected photodegradation of CDOM, photo-induced synthetic reaction transformed the LMW matters to polysaccharides (PCHO) and degradation reaction decomposed the HMW DOM to Monosaccharides. Colloidal DOM preferentially underwent photodegradation, whereas permeate DOM mainly photosynthesized PCHO. The total hydrolysable amino acid (THAA) pool changed because of the additional input by the photodegradation of DOM or THAA itself. The compositions of THAA changed during the irradiation experiments, indicating that the different photochemical behavior of individual amino acids were related to their different original photoreactivities; the relatively stable amino acids (e.g., Ser and Gly) significantly accumulated during irradiation, whereas photo-active aromatic amino acids (e.g. Tyr and His) were prone to photodegradation. The data presented here demonstrated that irradiation significantly influence the conversion between dissolved and colloid organic matter. These results can promote the understanding of irradiation effect on the carbon and nitrogen cycle in riverine, estuarine and oceanic ecosystems. Copyright © 2017

  13. Advanced solid-state NMR spectroscopy of natural organic matter.

    PubMed

    Mao, Jingdong; Cao, Xiaoyan; Olk, Dan C; Chu, Wenying; Schmidt-Rohr, Klaus

    2017-05-01

    Solid-state NMR is essential for the characterization of natural organic matter (NOM) and is gaining importance in geosciences and environmental sciences. This review is intended to highlight advanced solid-state NMR techniques, especially a systematic approach to NOM characterization, and their applications to the study of NOM. We discuss some basics of how to acquire high-quality and quantitative solid-state 13 C NMR spectra, and address some common technical mistakes that lead to unreliable spectra of NOM. The identification of specific functional groups in NOM, primarily based on 13 C spectral-editing techniques, is described and the theoretical background of some recently-developed spectral-editing techniques is provided. Applications of solid-state NMR to investigating nitrogen (N) in NOM are described, focusing on limitations of the widely used 15 N CP/MAS experiment and the potential of improved advanced NMR techniques for characterizing N forms in NOM. Then techniques used for identifying proximities, heterogeneities and domains are reviewed, and some examples provided. In addition, NMR techniques for studying segmental dynamics in NOM are reviewed. We also briefly discuss applications of solid-state NMR to NOM from various sources, including soil organic matter, aquatic organic matter, organic matter in atmospheric particulate matter, carbonaceous meteoritic organic matter, and fossil fuels. Finally, examples of NMR-based structural models and an outlook are provided. Copyright © 2016 Elsevier B.V. All rights reserved.

  14. Tracing organic matter composition and distribution and its role on arsenic release in shallow Cambodian groundwaters

    NASA Astrophysics Data System (ADS)

    Lawson, Michael; Polya, David A.; Boyce, Adrian J.; Bryant, Charlotte; Ballentine, Christopher J.

    2016-04-01

    Biogeochemical processes that utilize dissolved organic carbon are widely thought to be responsible for the liberation of arsenic from sediments to shallow groundwater in south and southeast Asia. The accumulation of this known carcinogen to hazardously high concentrations has occurred in the primary source of drinking water in large parts of densely populated countries in this region. Both surface and sedimentary sources of organic matter have been suggested to contribute dissolved organic carbon in these aquifers. However, identification of the source of organic carbon responsible for driving arsenic release remains enigmatic and even controversial. Here, we provide the most extensive interrogation to date of the isotopic signature of ground and surface waters at a known arsenic hotspot in Cambodia. We present tritium and radiocarbon data that demonstrates that recharge through ponds and/or clay windows can transport young, surface derived organic matter into groundwater to depths of 44 m under natural flow conditions. Young organic matter dominates the dissolved organic carbon pool in groundwater that is in close proximity to these surface water sources and we suggest this is likely a regional relationship. In locations distal to surface water contact, dissolved organic carbon represents a mixture of both young surface and older sedimentary derived organic matter. Ground-surface water interaction therefore strongly influences the average dissolved organic carbon age and how this is distributed spatially across the field site. Arsenic mobilization rates appear to be controlled by the age of dissolved organic matter present in these groundwaters. Arsenic concentrations in shallow groundwaters (<20 m) increase by 1 μg/l for every year increase in dissolved organic carbon age compared to only 0.25 μg/l for every year increase in dissolved organic carbon age in deeper (>20 m) groundwaters. We suggest that, while the rate of arsenic release is greatest in shallow

  15. The Case Against Charge Transfer Interactions in Dissolved Organic Matter Photophysics.

    PubMed

    McKay, Garrett; Korak, Julie A; Erickson, Paul R; Latch, Douglas E; McNeill, Kristopher; Rosario-Ortiz, Fernando L

    2018-01-16

    The optical properties of dissolved organic matter influence chemical and biological processes in all aquatic ecosystems. Dissolved organic matter optical properties have been attributed to a charge-transfer model in which donor-acceptor complexes play a primary role. This model was evaluated by measuring the absorbance and fluorescence response of organic matter isolates to changes in solvent temperature, viscosity, and polarity, which affect the position and intensity of spectra for known donor-acceptor complexes of organic molecules. Absorbance and fluorescence spectral shape were largely unaffected by these changes, indicating that the distribution of absorbing and emitting species was unchanged. Overall, these results call into question the wide applicability of the charge-transfer model for explaining organic matter optical properties and suggest that future research should explore other models for dissolved organic matter photophysics.

  16. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls

    DOE PAGES

    Kallenbach, Cynthia M.; Frey, Serita D.; Grandy, A. Stuart

    2016-11-28

    Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes producemore » chemically diverse, stable SOM. As a result, we show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.« less

  17. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kallenbach, Cynthia M.; Frey, Serita D.; Grandy, A. Stuart

    Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes producemore » chemically diverse, stable SOM. As a result, we show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.« less

  18. Accumulation and turnover of carbon in organic and mineral soils of the BOREAS northern study area

    USGS Publications Warehouse

    Trumbore, S.E.; Harden, J.W.

    1997-01-01

    Rates of input, accumulation, and turnover of C differ markedly within soil profiles and in soils with different drainage in the BOREAS northern study area. Soil C storage increases from ???3 kg C m-2 in well-drained, sandy soils to greater than 100 kg C m-2 in wetlands. Two modes of C accumulation were observed in upland soil profiles. Large annual C inputs (0.06-0.1 kg C m-2 yr-1) and slow decomposition (turnover times of 6-250 years) lead to rapid C accumulation in regrowing surface moss and detrital layers following fire. Deep organic layers that have accumulated over the millennia since the initiation of soil development, and are located below the most recent charred horizon, show slower rates of input (0.015-0.03 kg C m-2 yr-1) and turnover (100-1600 years) and accumulate C about 10 times slower than surface detrital layers. Rates of C input to soils derived from C and 14C data were in accord with net primary production estimates, with highest rates of input (0.14-0.6 kg C m-2 yr-1) in wetlands. Turnover times for C in surface detrital layers were 6-15 years for well-drained sand soils that showed highest soil temperatures in summer, 30-40 years for wetlands, and 36-250 years for uplands with thick moss cover and black spruce trees. Long (>100 years) turnover times in upland black spruce/clay soils most likely reflect the influence of woody debris incorporated into detrital layers. Turnover times for deep organic and mineral layer C were controlled by drainage, with fastest turnover (80-130 years) in well-drained sand soils and slowest turnover (>3000 years) in wetlands. Total C accumulation rates, which account for C losses from both deep organic and surface detrital layers, are close to zero for sand/jack pine soils, 0.003-0.01 kg C m-2 yr-1 for moderately to poorly drained sites in mature forest stands, and 0.03 kg C m-2 yr-1 for a productive fen. Decomposition of organic matter more than several decades old accounts for 9-22% of total heterotrophic

  19. Dissolved organic matter in anoxic pore waters from Mangrove Lake, Bermuda

    USGS Publications Warehouse

    Orem, W.H.; Hatcher, P.G.; Spiker, E. C.; Szeverenyi, N.M.; Maciel, G.E.

    1986-01-01

    Dissolved organic matter and dissolved inorganic chemical species in anoxic pore water from Mangrove Lake, Bermuda sediments were studied to evaluate the role of pore water in the early diagenesis of organic matter. Dissolved sulphate, titration alkalinity, phosphate, and ammonia concentration versus depth profiles were typical of many nearshore clastic sediments and indicated sulphate reduction in the upper 100 cm of sediment. The dissolved organic matter in the pore water was made up predominantly of large molecules, was concentrated from large quantities of pore water by using ultrafiltration and was extensively tudied by using elemental and stable carbon isotope analysis and high-resolution, solid state 13C nuclear magnetic resonance and infrared spectroscopy. The results indicate that this material has a predominantly polysaccharide-like structure and in addition contains a large amount of oxygen-containing functional groups (e.g., carboxyl groups). The 13C nulcear magnetic resonance spectra of the high-molecular-weight dissolved organic matter resemble those of the organic matter in the surface sediments of Mangrove Lake. We propose that this high-molecular-weight organic matter in pore waters represents the partially degraded, labile organic components of the sedimentary organic matter and that pore waters serve as a conduit for removal of these labile organic components from the sediments. The more refractory components are, thus, selectively preserved in the sediments as humic substances (primarily humin). ?? 1986.

  20. Similarities in chemical composition of soil organic matter across a millennia-old paddy soil chronosequence as revealed by advanced solid-state NMR spectroscopy

    USDA-ARS?s Scientific Manuscript database

    Soil organic matter (SOM) accumulation in paddy soils has aroused considerable attention due to its vital significance in global food, energy, climate, and environmental issues. Considerable progress has been made toward the understanding of changes in the quantity of SOM in paddy soils over a mille...

  1. Enhancement of the natural organic matter removal from drinking water by nanofiltration.

    PubMed

    Matilainen, A; Liikanen, R; Nyström, M; Lindqvist, N; Tuhkanen, T

    2004-03-01

    Finnish surface waters are abundant in natural organic matter. Natural organic matter can be removed from drinking water in a water treatment process by coagulation and filtration. The standard treatment operations are not able to remove the smallest molar mass fraction of organic matter and the intermediate molar mass matter is only partly removed. The removal of residual natural organic matter from drinking water by nanofiltration was evalueted in this study. Three different nanofiltration membranes were compared in filtering six pre-treated surface waters. The total organic carbon content of the feed waters varied from 2.0 to 4.2 mg l(-1). Other water quality parameters measured were conductivity, alkalinity, hardness, UV-absorbance, SUVA, E2/E3 value and molecular size distribution by high-performance size-exclusion chromatography. The natural organic matter removal efficiencies of the membranes were good and varied between 100% and 49%, and between 85% and 47% according to molecular size distribution and total organic carbon measurements, respectively. Removal of different molecular size fractions varied from 100% to 56%, 100% to 54% and 88% to 19%, regarding high molar mass, intermediate molar mass and low molar mass organic matter, respectively. The Desal-5 DL membrane produced the highest natural organic matter removals.

  2. Analysis of the Organic Matter in Interplanetary Dust Particles: Clues to the Organic Matter in Comets, Asteroids, and Interstellar Grains

    NASA Technical Reports Server (NTRS)

    Flynn, G. J.; Keller, L. P.

    2003-01-01

    Reflection spectroscopy suggests the C- , P-, and D-types of asteroids contain abundant carbon, but these Vis-nearIR spectra are featureless, providing no information on the type(s) of carbonaceous matter. Infrared spectroscopy demonstrates that organic carbon is a significant component in comets and as grains or grain coatings in the interstellar medium. Most of the interplanetary dust particles (IDPs) recovered from the Earth s stratosphere are believed to be fragments from asteroids or comets, thus characterization of the carbon in IDPs provides the opportunity to determine the type(s) and abundance of organic matter in asteroids and comets. Some IDPs exhibit isotopic excesses of D and N-15, indicating the presence of interstellar material. The characterization of the carbon in these IDPs, and particularly any carbon spatially associated with the isotopic anomalies, provides the opportunity to characterize interstellar organic matter.

  3. The Case Against Charge Transfer Interactions in Dissolved Organic Matter Optical Properties

    NASA Astrophysics Data System (ADS)

    McKay, G.; Korak, J.; Erickson, P. R.; Latch, D. E.; McNeill, K.; Rosario-Ortiz, F.

    2017-12-01

    The optical properties of dissolved organic matter influence chemical and biological processes in all aquatic ecosystems. Organic matter optical properties have been used by scientists and engineers for decades for remote sensing, in situ monitoring, and characterizing laboratory samples to track dissolved organic carbon concentration and character. However, there is still a lack of understanding of the origin of organic matter optical properties, which could conflict with other empirical fluorescence interpretation methods (e.g. PARAFAC). Organic matter optical properties have been attributed to a charge-transfer model in which donor-acceptor complexes play a primary role. This model was evaluated by measuring the absorbance and fluorescence response of organic matter isolates to perturbations in solvent temperature, viscosity, and polarity, which affect the position and intensity of spectra for known donor-acceptor complexes of organic molecules. Absorbance and fluorescence spectral shape were unaffected by these perturbations, indicating that the distribution of absorbing and emitting species was unchanged. These results call into question the wide applicability of the charge-transfer model for explaining organic matter optical properties and suggest that future research should explore other models for organic matter photophysics.

  4. Influence of Multiple Environmental Factors on Organic Matter Chlorination in Podsol Soil.

    PubMed

    Svensson, Teresia; Montelius, Malin; Andersson, Malin; Lindberg, Cecilia; Reyier, Henrik; Rietz, Karolina; Danielsson, Åsa; Bastviken, David

    2017-12-19

    Natural chlorination of organic matter is common in soils. The abundance of chlorinated organic compounds frequently exceeds chloride in surface soils, and the ability to chlorinate soil organic matter (SOM) appears widespread among microorganisms. Yet, the environmental control of chlorination is unclear. Laboratory incubations with 36 Cl as a Cl tracer were performed to test how combinations of environmental factors, including levels of soil moisture, nitrate, chloride, and labile organic carbon, influenced chlorination of SOM from a boreal forest. Total chlorination was hampered by addition of nitrate or by nitrate in combination with water but enhanced by addition of chloride or most additions including labile organic matter (glucose and maltose). The greatest chlorination was observed after 15 days when nitrate and water were added together with labile organic matter. The effect that labile organic matter strongly stimulated the chlorination rates was confirmed by a second independent experiment showing higher stimulation at increased availability of labile organic matter. Our results highlight cause-effect links between chlorination and the studied environmental variables in podsol soil-with consistent stimulation by labile organic matter that did overrule the negative effects of nitrate.

  5. Assessing the Capacity of Plant Species to Accumulate Particulate Matter in Beijing, China

    PubMed Central

    Mo, Li; Ma, Zeyu; Xu, Yansen; Sun, Fengbin; Lun, Xiaoxiu; Liu, Xuhui; Chen, Jungang; Yu, Xinxiao

    2015-01-01

    Air pollution causes serious problems in spring in northern China; therefore, studying the ability of different plants to accumulate particulate matter (PM) at the beginning of the growing season may benefit urban planners in their attempts to control air pollution. This study evaluated deposits of PM on the leaves and in the wax layer of 35 species (11 shrubs, 24 trees) in Beijing, China. Differences in the accumulation of PM were observed between species. Cephalotaxus sinensis, Euonymus japonicus, Broussonetia papyriferar, Koelreuteria paniculata and Quercus variabilis were all efficient in capturing small particles. The plants exhibiting high amounts of total PM accumulation (on leaf surfaces and/or in the wax layer), also showed comparatively high levels of PM accumulation across all particle sizes. A comparison of shrubs and trees did not reveal obvious differences in their ability to accumulate particles based on growth form; a combination of plantings with different growth forms can efficiently reduce airborne PM concentrations near the ground. To test the relationships between leaf traits and PM accumulation, leaf samples of selected species were observed using a scanning electron microscope. Growth forms with greater amounts of pubescence and increased roughness supported PM accumulation; the adaxial leaf surfaces collected more particles than the abaxial surfaces. The results of this study may inform the selection of species for urban green areas where the goal is to capture air pollutants and mitigate the adverse effects of air pollution on human health. PMID:26506104

  6. Repeated applications of compost and manure mainly affect the size and chemical nature of particulate organic matter in a loamy soil after 8 years

    NASA Astrophysics Data System (ADS)

    Peltre, Clement; Dignac, Marie-France; Doublet, Jeremy; Plante, Alain; Houot, Sabine

    2013-04-01

    Land application of exogenous organic matter (EOM) of residual origin can help to maintain or increase soil organic carbon (SOC) stocks. However, it remains necessary to quantify and predict the soil C accumulation and to determine under which form the C accumulates. Changes to the chemical composition of soil organic matter (SOM) after repeated applications of composts and farmyard manure were investigated in a field experiment (Qualiagro experiment, Ile-de-France) after 8 years of applications of green waste and sludge compost (GWS), municipal solid waste compost (MSW), biowaste compost (BIOW) or farmyard manure (FYM). The soil was fractionated into particulate organic matter >50 µm (POM), a heavy fraction >50 µm and a 0-50 µm fraction demineralized with hydrofluoric acid (HF). Repeated EOM applications significantly increased total SOC stocks, the C amount in the POM fraction and to a less extent in the 0-50 µm fraction compared to the reference treatment. Compost applications accumulated C preferentially under the form of coarse organic matter of size >50 µm, whereas the FYM accumulated similar C proportions of size >50 µm and 0-50 µm, which was attributed to the presence in the FYM of a fraction of labile C stimulating microbial activity and producing humified by-products together with a fraction of stabilized C directly alimenting the humified fraction of SOC. Pyrolysis-GC/MS and DRIFT spectroscopy revealed enrichment in lignin in the POM fractions of amended soils with GWS, BIOW and FYM. In the soil receiving MSW compost, the pyrolysate of the POM fraction revealed the presence of plastics originating from the MSW compost. A lower C mineralization during laboratory incubation was found for the POM fractions of amended soils compared with the POM from reference soil. This feature was related to a lower ratio of (furfural+acetic acid) / pyrole pyrolysis products in POM of amended vs. reference plots, indicating a higher degree of recalcitrance.. The POM

  7. Characterization of inhalable particulate matter, volatile organic compounds and other chemical species measured in urban areas in New Jersey—I. Summertime episodes

    NASA Astrophysics Data System (ADS)

    Lioy, Paul J.; Daisey, Joan M.; Reiss, Nathan M.; Harkov, Ronald

    The 1981 Summer Campaign results of the New Jersey Project on Airborne Toxic Elements and Organic Substances (ATEOS) have been examined for the accumulation of various pollutants during photochemical smog type episodes in Newark, Elizabeth and Camden, N.J. Background data were provided from a rural site in Ringwood, N.J. The interrelationships among inhalable particulate matter (IPM), particulate organic matter (POM), polycyclic aromatic hydrocarbons (PAH), SO 2-4, V, Pb, O 3, volatile organic compounds and alkylating agents are described. In addition, the prevailing synoptic meteorology was examined to characterize the episodes and define situations that significantly affected the accumulation patterns. The concentrations of PAH, toluene, benzene, V and Pb usually varied independently of the episodes indicating primary source contributions. The alkylating agent concentrations appeared to increase in association with episode periods. The results also indicated that 50-60% of the IPM mass in the urban areas was composed of the sum of SO 2-4 and POM. Between site analysis of the SO 2-4 indicated primarily a regional distribution pattern, while the POM appeared to be related to contributions from both local and regional sources.

  8. Carbon accumulation and storage capacity in mangrove sediments three decades after deforestation within a eutrophic bay.

    PubMed

    Pérez, A; Machado, W; Gutiérrez, D; Borges, A C; Patchineelam, S R; Sanders, C J

    2018-01-01

    A dated sediment core from an eutrophic mangrove area presented non-significant differences in carbon accumulation rates before (55.7±10.2gm -2 yr -1 ) and after three decades of deforestation (59.7±7.2gm -2 yr -1 ). Although eutrophication effects appear to compensate the loss of mangrove organic matter input, the results in this work show a threefold lower carbon accumulation than the global averages estimated for mangrove sediments. The effects of increasing eutrophication and enhanced sediment dry bulk density observed after deforestation (~30% higher) did not result in higher carbon stocks. Moreover, the lower TOC:OP (<400) and C:N (~20) molar ratios, as well as increased nutrient accumulation, reflect the dominance of phytoplankton-derived organic matter after deforestation, resulting in less-efficient sedimentary carbon sinks. These results indicate that the organic material deposited from eutrophication may not compensate mangrove deforestation losses on carbon accumulation in mangrove ecosystems. Copyright © 2017 Elsevier Ltd. All rights reserved.

  9. Natural organic matter properties in Swedish agricultural streams

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Kyllmar, Katarina; Bergström, Lars; Köhler, Stephan

    2017-04-01

    The following paper shows natural organic matter (NOM) properties of stream water samples collected from 8 agricultural streams and 12 agricultural observational fields in Sweden. The catchments and observational fields cover a broad range of environmental (climate, soil type), land use and water quality (nutrient and concentrations, pH, alkalinity) characteristics. Stream water samples collected every two weeks within an ongoing Swedish Monitoring Programme for Agriculture have been analysed for total/dissolved organic carbon, absorbance and fluorescence spectroscopy. A number of quantitative and qualitative spectroscopic parameters was calculated to help to distinguish between terrestrially-derived, refractory organic material and autochthonous, labile material indicative of biogeochemical transformations of terrestrial NOM and recent biological production. The study provides insights into organic matter properties and carbon budgets in agricultural streams and improves understanding of how agricultural catchments transform natural and anthropogenic fluxes of organic matter and nutrients. The insights from the grab sampling are supported by high-frequency turbidity, fulvic-like and tryptophan-like fluorescence measurements with in situ optical sensor.

  10. Interstellar chemistry recorded in organic matter from primitive meteorites.

    PubMed

    Busemann, Henner; Young, Andrea F; Alexander, Conel M O'd; Hoppe, Peter; Mukhopadhyay, Sujoy; Nittler, Larry R

    2006-05-05

    Organic matter in extraterrestrial materials has isotopic anomalies in hydrogen and nitrogen that suggest an origin in the presolar molecular cloud or perhaps in the protoplanetary disk. Interplanetary dust particles are generally regarded as the most primitive solar system matter available, in part because until recently they exhibited the most extreme isotope anomalies. However, we show that hydrogen and nitrogen isotopic compositions in carbonaceous chondrite organic matter reach and even exceed those found in interplanetary dust particles. Hence, both meteorites (originating from the asteroid belt) and interplanetary dust particles (possibly from comets) preserve primitive organics that were a component of the original building blocks of the solar system.

  11. Effects of titanium dioxide (TiO2) nanoparticles on the photodissolution of particulate organic matter: Insights from fluorescence spectroscopy and environmental implications.

    PubMed

    Hu, Bin; Wang, Peifang; Hou, Jun; Wang, Chao; Qian, Jin; Zhang, Nannan; Yuan, Qiusheng

    2017-10-01

    Widely used titanium dioxide (TiO 2 ) nanoparticles are likely to accumulate ultimately in sediments and potentially pose a risk to water ecosystems. This study evaluated the effect of TiO 2 nanoparticles on the photodissolution of particulate organic matter (POM) through fluorescence spectroscopy. Excitation-emission matrices and parallel factor analyses revealed that the fluorescent characteristics of produced dissolved organic matter (DOM) during photodissolution of suspended sediment and synthetic particulate organic matter (SPOM) were primarily humic-like. SPOM particles appeared to simulate well the photodissolution of suspended sediment. Quasi-complete increases in fluorescence intensity and chromophoric DOM (CDOM) abundance were reached after 90, 60, and 50 min irradiation for TiO 2 concentrations of 0, 2, and 5 mg L -1 , respectively. The faster increment of fluorescence intensity and CDOM abundance indicated the photocatalytic dissolution of SPOM, as opposite charges between TiO 2 and SPOM at pH = 4 favored the adsorption of TiO 2 onto SPOM. For sediments, the CDOM abundance and fluorescence intensity decreased with increasing TiO 2 concentration, resulting from the photocatalytic degradation of photoproduced DOM from sediments. These results demonstrated that pH plays an important role in the photocatalytic dissolution of POM by TiO 2 . Therefore, appropriate pH controls should be implemented when TiO 2 are used to treat sediments contaminated with organic pollutants. Finally, with increasing use of TiO 2 , its accumulation in sediments may affect the fate of carbon, nutrients, and heavy metals in shallow-water ecosystems. Copyright © 2017 Elsevier Ltd. All rights reserved.

  12. Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests.

    PubMed

    Ding, Junjun; Zhang, Yuguang; Wang, Mengmeng; Sun, Xin; Cong, Jing; Deng, Ye; Lu, Hui; Yuan, Tong; Van Nostrand, Joy D; Li, Diqiang; Zhou, Jizhong; Yang, Yunfeng

    2015-10-01

    As two major forest types in the subtropics, broadleaved evergreen and broadleaved deciduous forests have long interested ecologists. However, little is known about their belowground ecosystems despite their ecological importance in driving biogeochemical cycling. Here, we used Illumina MiSeq sequencing targeting 16S rRNA gene and a microarray named GeoChip targeting functional genes to analyse microbial communities in broadleaved evergreen and deciduous forest soils of Shennongjia Mountain of Central China, a region known as 'The Oriental Botanic Garden' for its extraordinarily rich biodiversity. We observed higher plant diversity and relatively richer nutrients in the broadleaved evergreen forest than the deciduous forest. In odds to our expectation that plant communities shaped soil microbial communities, we found that soil organic matter quantity and quality, but not plant community parameters, were the best predictors of microbial communities. Actinobacteria, a copiotrophic phylum, was more abundant in the broadleaved evergreen forest, while Verrucomicrobia, an oligotrophic phylum, was more abundant in the broadleaved deciduous forest. The density of the correlation network of microbial OTUs was higher in the broadleaved deciduous forest but its modularity was smaller, reflecting lower resistance to environment changes. In addition, keystone OTUs of the broadleaved deciduous forest were mainly oligotrophic. Microbial functional genes associated with recalcitrant carbon degradation were also more abundant in the broadleaved deciduous forests, resulting in low accumulation of organic matters. Collectively, these findings revealed the important role of soil organic matter in shaping microbial taxonomic and functional traits. © 2015 John Wiley & Sons Ltd.

  13. Chemical Form Matters: Differential Accumulation of Mercury Following Inorganic and Organic Mercury Exposures in Zebrafish Larvae

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Korbas, Malgorzata; MacDonald, Tracy C.; Pickering, Ingrid J.

    2013-04-08

    Mercury, one of the most toxic elements, exists in various chemical forms each with different toxicities and health implications. Some methylated mercury forms, one of which exists in fish and other seafood products, pose a potential threat, especially during embryonic and early postnatal development. Despite global concerns, little is known about the mechanisms underlying transport and toxicity of different mercury species. To investigate the impact of different mercury chemical forms on vertebrate development, we have successfully combined the zebrafish, a well-established developmental biology model system, with synchrotron-based X-ray fluorescence imaging. Our work revealed substantial differences in tissue-specific accumulation patterns ofmore » mercury in zebrafish larvae exposed to four different mercury formulations in water. Methylmercury species not only resulted in overall higher mercury burdens but also targeted different cells and tissues than their inorganic counterparts, thus revealing a significant role of speciation in cellular and molecular targeting and mercury sequestration. For methylmercury species, the highest mercury concentrations were in the eye lens epithelial cells, independent of the formulation ligand (chloride versus L-cysteine). For inorganic mercury species, in absence of L-cysteine, the olfactory epithelium and kidney accumulated the greatest amounts of mercury. However, with L-cysteine present in the treatment solution, mercuric bis-L-cysteineate species dominated the treatment, significantly decreasing uptake. Our results clearly demonstrate that the common differentiation between organic and inorganic mercury is not sufficient to determine the toxicity of various mercury species.« less

  14. Origin and distribution of the organic matter in the distal lobe of the Congo deep-sea fan - A Rock-Eval survey

    NASA Astrophysics Data System (ADS)

    Baudin, François; Stetten, Elsa; Schnyder, Johann; Charlier, Karine; Martinez, Philippe; Dennielou, Bernard; Droz, Laurence

    2017-08-01

    The Congo River, the second largest river in the world, is a major source of organic matter for the deep Atlantic Ocean because of the connection of its estuary to the deep offshore area by a submarine canyon which feeds a vast deep-sea fan. The lobe zone of this deep-sea fan is the final receptacle of the sedimentary inputs presently channelled by the canyon and covers an area of 2500 km². The quantity and the source of organic matter preserved in recent turbiditic sediments from the distal lobe of the Congo deep-sea fan were assessed using Rock-Eval pyrolysis analyses. Six sites, located at approximately 5000 m water-depth, were investigated. The mud-rich sediments of the distal lobe contain high amounts of organic matter ( 3.5 to 4% Corg), the origin of which is a mixture of terrestrial higher-plant debris, soil organic matter and deeply oxidized phytoplanktonic material. Although the respective contribution of terrestrial and marine sources of organic matter cannot be precisely quantified using Rock-Eval analyses, the terrestrial fraction is dominant according to similar hydrogen and oxygen indices of both suspended and bedload sediments from the Congo River and that deposited in the lobe complex. The Rock-Eval signature supports the 70% to 80% of the terrestrial fraction previously estimated using C/N and δ13Corg data. In the background sediment, the organic matter distribution is homogeneous at different scales, from a single turbiditic event to the entire lobe, and changes in accumulation rates only have a limited effect on the quantity and quality of the preserved organic matter. Peculiar areas with chemosynthetic bivalves and/or bacterial mats, explored using ROV Victor 6000, show a Rock-Eval signature similar to background sediment. This high organic carbon content associated to high sedimentation rates (> 2 to 20 mm.yr-1) in the Congo distal lobe complex implies a high burial rate for organic carbon. Consequently, the Congo deep-sea fan represents an

  15. Do soils loose phosphorus with dissolved organic matter?

    NASA Astrophysics Data System (ADS)

    Kaiser, K.; Brödlin, D.; Hagedorn, F.

    2014-12-01

    During ecosystem development and soil formation, primary mineral sources of phosphorus are becoming increasingly depleted. Inorganic phosphorus forms tend to be bound strongly to or within secondary minerals, thus, are hardly available to plants and are not leached from soil. What about organic forms of phosphorus? Since rarely studied, little is known on the composition, mobility, and bioavailability of dissolved organic phosphorus. There is some evidence that plant-derived compounds, such as phytate, bind strongly to minerals as well, while microbial compounds, such as nucleotides and nucleic acids, may represent more mobile fractions of soil phosphorus. In some weakly developed, shallow soils, leaching losses of phosphorus seem to be governed by mobile organic forms. Consequently, much of the phosphorus losses observed during initial stages of ecosystem development may be due to the leaching of dissolved organic matter. However, the potentially mobile microbial compounds are enzymatically hydrolysable. Forest ecosystems on developed soils already depleted in easily available inorganic phosphorus are characterized by rapid recycling of organic phosphors. That can reduce the production of soluble forms of organic phosphorus as well as increase the enzymatic hydrolysis and subsequent plant uptake of phosphorus bound within dissolved organic matter. This work aims at giving an outlook to the potential role of dissolved organic matter in the cycling of phosphorus within developing forest ecosystems, based on literature evidence and first results of ongoing research.

  16. Anthropogenic aerosols as a source of ancient dissolved organic matter in glaciers

    USGS Publications Warehouse

    Stubbins, Aron; Hood, Eran; Raymond, Peter A.; Aiken, George R.; Sleighter, Rachel L.; Hernes, Peter J.; Butman, David; Hatcher, Patrick G.; Striegl, Robert G.; Schuster, Paul F.; Abdulla, Hussain A.N.; Vermilyea, Andrew W.; Scott, Durelle T.; Spencer, Robert G.M.

    2012-01-01

    Glacier-derived dissolved organic matter represents a quantitatively significant source of ancient, yet highly bioavailable carbon to downstream ecosystems. This finding runs counter to logical perceptions of age–reactivity relationships, in which the least reactive material withstands degradation the longest and is therefore the oldest. The remnants of ancient peatlands and forests overrun by glaciers have been invoked as the source of this organic matter. Here, we examine the radiocarbon age and chemical composition of dissolved organic matter in snow, glacier surface water, ice and glacier outflow samples from Alaska to determine the origin of the organic matter. Low levels of compounds derived from vascular plants indicate that the organic matter does not originate from forests or peatlands. Instead, we show that the organic matter on the surface of the glaciers is radiocarbon depleted, consistent with an anthropogenic aerosol source. Fluorescence spectrophotometry measurements reveal the presence of protein-like compounds of microbial or aerosol origin. In addition, ultrahigh-resolution mass spectrometry measurements document the presence of combustion products found in anthropogenic aerosols. Based on the presence of these compounds, we suggest that aerosols derived from fossil fuel burning are a source of pre-aged organic matter to glacier surfaces. Furthermore, we show that the molecular signature of the organic matter is conserved in snow, glacier water and outflow, suggesting that the anthropogenic carbon is exported relatively unchanged in glacier outflows.

  17. The effect of fire on soil organic matter--a review.

    PubMed

    González-Pérez, José A; González-Vila, Francisco J; Almendros, Gonzalo; Knicker, Heike

    2004-08-01

    The extent of the soil organic carbon pool doubles that present in the atmosphere and is about two to three times greater than that accumulated in living organisms in all Earth's terrestrial ecosystems. In such a scenario, one of the several ecological and environmental impacts of fires is that biomass burning is a significant source of greenhouse gases responsible for global warming. Nevertheless, the oxidation of biomass is usually incomplete and a range of pyrolysis compounds and particulate organic matter (OM) in aerosols are produced simultaneously to the thermal modification of pre-existing C forms in soil. These changes lead to the evolution of the OM to "pyromorphic humus", composed by rearranged macromolecular substances of weak colloidal properties and an enhanced resistance against chemical and biological degradation. Hence the occurrence of fires in both undisturbed and agricultural ecosystems may produce long-lasting effects on soils' OM composition and dynamics. Due to the large extent of the C pool in soils, small deviations in the different C forms may also have a significant effect in the global C balance and consequently on climate change. This paper reviews the effect of forest fires on the quantity and quality of soils' OM. It is focused mainly on the most stable pool of soil C; i.e., that having a large residence time, composed of free lipids, colloidal fractions, including humic acids (HA) and fulvic acids (FA), and other resilient forms. The main transformations exerted by fire on soil humus include the accumulation of new particulate C forms highly resistant to oxidation and biological degradation including the so-called "black carbon" (BC). Controversial environmental implications of such processes, specifically in the stabilisation of C in soil and their bearing on the global C cycle are discussed.

  18. Uranium(IV) adsorption by natural organic matter in anoxic sediments

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bone, Sharon E.; Dynes, James J.; Cliff, John

    Uranium is an important carbon-free fuel source and environmental contaminant that accumulates in the tetravalent state, U(IV), in anoxic sediments, such as ore deposits, marine basins, and contaminated aquifers. However, little is known about the speciation of U(IV) in low-temperature geochemical environments, inhibiting the development of a conceptual model of U behavior. Until recently, U(IV) was assumed to exist predominantly as the sparingly soluble mineral uraninite (UO 2+x) in anoxic sediments; however, studies now show that this is not often the case. Yet a model of U(IV) speciation in the absence of mineral formation under field-relevant conditions has not yetmore » been developed. Uranium(IV) speciation controls its reactivity, particularly its susceptibility to oxidative mobilization, impacting its distribution and toxicity. Here we show adsorption to organic carbon and organic carbon-coated clays dominate U(IV) speciation in an organic-rich natural substrate under field-relevant conditions. Whereas previous research assumed that U(IV) speciation is dictated by the mode of reduction (i.e., whether reduction is mediated by microbes or by inorganic reductants), our results demonstrate that mineral formation can be diminished in favor of adsorption, regardless of reduction pathway. Projections of U transport and bioavailability, and thus its threat to human and ecosystem health, must consider U(IV) adsorption to organic matter within the sediment environment.« less

  19. Uranium(IV) adsorption by natural organic matter in anoxic sediments

    DOE PAGES

    Bone, Sharon E.; Dynes, James J.; Cliff, John; ...

    2017-01-09

    Uranium is an important carbon-free fuel source and environmental contaminant that accumulates in the tetravalent state, U(IV), in anoxic sediments, such as ore deposits, marine basins, and contaminated aquifers. However, little is known about the speciation of U(IV) in low-temperature geochemical environments, inhibiting the development of a conceptual model of U behavior. Until recently, U(IV) was assumed to exist predominantly as the sparingly soluble mineral uraninite (UO 2+x) in anoxic sediments; however, studies now show that this is not often the case. Yet a model of U(IV) speciation in the absence of mineral formation under field-relevant conditions has not yetmore » been developed. Uranium(IV) speciation controls its reactivity, particularly its susceptibility to oxidative mobilization, impacting its distribution and toxicity. Here we show adsorption to organic carbon and organic carbon-coated clays dominate U(IV) speciation in an organic-rich natural substrate under field-relevant conditions. Whereas previous research assumed that U(IV) speciation is dictated by the mode of reduction (i.e., whether reduction is mediated by microbes or by inorganic reductants), our results demonstrate that mineral formation can be diminished in favor of adsorption, regardless of reduction pathway. Projections of U transport and bioavailability, and thus its threat to human and ecosystem health, must consider U(IV) adsorption to organic matter within the sediment environment.« less

  20. Organic geochemical analysis of sedimentary organic matter associated with uranium

    USGS Publications Warehouse

    Leventhal, J.S.; Daws, T.A.; Frye, J.S.

    1986-01-01

    Samples of sedimentary organic matter from several geologic environments and ages which are enriched in uranium (56 ppm to 12%) have been characterized. The three analytical techniqyes used to study the samples were Rock-Eval pyrolysis, pyrolysis-gas chromatography-mass spectrometry, and solid-state C-13 nuclear magnetic resonance (NMR) spectroscopy. In samples with low uranium content, the pyrolysis-gas chromatography products contain oxygenated functional groups (as hydroxyl) and molecules with both aliphatic and aromatic carbon atoms. These samples with low uranium content give measurable Rock-Eval hydrocarbon and organic-CO2 yields, and C-13 NMR values of > 30% aliphatic carbon. In contrast, uranium-rich samples have few hydrocarbon pyrolysis products, increased Rock-Eval organic-CO2 contents and > 70% aromatic carbon contents from C-13 NMR. The increase in aromaticity and decrease in hydrocarbon pyrolysis yield are related to the amount of uranium and the age of the uranium minerals, which correspond to the degree of radiation damage. The three analytical techniques give complementary results. Increase in Rock-Eval organic-CO2 yield correlates with uranium content for samples from the Grants uranium region. Calculations show that the amount of organic-CO2 corresponds to the quantity of uranium chemically reduced by the organic matter for the Grants uranium region samples. ?? 1986.

  1. Characterization of organic matter in lake sediments from Minnesota and Yellowstone National Park

    USGS Publications Warehouse

    Dean, Walter E.

    2006-01-01

    Samples of sediment from lakes in Minnesota and Yellowstone National Park (YNP) were analyzed for organic carbon (OC), hydrogen richness by Rock-Eval pyrolysis, and stable carbon- and nitrogen-isotope composition of bulk organic matter. Values of delta 13C of lake plankton tend to be around -28 to -32 parts per thousand (0/00). Organic matter with values of delta 13C in the high negative 20s overlap with those of organic matter derived from C3 higher terrestrial plants but are at least 10 0/00 more depleted in 13C than organic matter derived from C4 terrestrial plants. If the organic matter is produced mainly by photosynthetic plankton and is not oxidized in the water column, there may be a negative correlation between H-richness (Rock-Eval pyrolysis H-index) and delta 13C, with more H-rich, algal organic matter having lower values of delta 13C. However, if aquatic organic matter is oxidized in the water column, or if the organic matter is a mixture of terrestrial and aquatic organic matter, then there may be no correlation between H-richness and carbon-isotopic composition. Values of delta 13C lower than about -28 0/00 probably indicate a contribution of bacterial biomass produced in the hypolimnion by chemoautotrophy or methanotrophy. In highly eutrophic lakes in which large amounts of 13C-depleted organic matter is continually removed from the epilimnion by photosynthesis throughout the growing season, the entire carbon reservoir in the epilimnion may become severely 13C-enriched so that 13C-enriched photosynthetic organic matter may overprint 13C-depleted chemosynthetic bacterial organic matter produced in the hypolimnon. Most processes involved with the nitrogen cycle in lakes, such as production of ammonia and nitrate, tend to produce 15N-enriched values of delta 15N. Most Minnesota lake sediments are 15N-enriched. However, some of the more OC-rich sediments have delta 15N values close to zero (delta 15N of air), suggesting that organic matter production is

  2. Influence of cardiopulmonary bypass on platelet and neutrophil accumulations in internal organs.

    PubMed

    Bhujle, R; Li, J; Shastri, P; Gaffke, J N; Clift, J E; Ye, Y W; Dollar, M L; Ching, P; Chao, R; Constantinescu, A; Kulkarni, P V; Cheng, Q C; Wians, F; Jessen, M E; Eberhart, R C

    1997-01-01

    The authors employed gamma scintigraphy to quantify the post bypass accumulations of platelets and neutrophils in the lung, liver, and heart of adult pigs subjected to a standard 90 min regimen of normothermic cardiopulmonary bypass (CPB). Coated and uncoated microporous polypropylene oxygenator circuits were studied for Cobe Duo (Arvada, CO) oxygenators (amphophilic silicone-caprolactone oligomer [SMA] coating, n = 8 each) and Medtronic Maxima (Irvine, CA) oxygenators (Carmeda heparin coating, n = 5 each). Images of cells in the organs (deposited + blood pool) were corrected for tissue absorption and other factors and compared for a 2 hr period post CPB, using repeat measures ANOVA and rank tests. Platelet accumulations in internal organs correlated positively with whole blood platelet counts and negatively with platelet deposits in oxygenators during CPB. In general, uncoated CPB circuits significantly reduced platelet and neutrophil accumulations in lung, liver, and heart versus preCPB controls for the post CPB interval, for both systems. The SMA treatment significantly increased platelet accumulations versus uncoated controls in lung, liver, and heart for the 2 hr period, including the majority of the post CPB sampling intervals; platelet densities did not reach preCPB levels. Neutrophil accumulations were unaffected by the SMA coating. Carmeda heparin treatment significantly increased platelet accumulations in the liver, but not lung or heart. Despite preservation of circulating neutrophils observed with the Carmeda heparin treatment, neutrophil accumulations in internal organs were not elevated post CPB.

  3. Organic matter variations in transgressive and regressive shales

    USGS Publications Warehouse

    Pasley, M.A.; Gregory, W.A.; Hart, G.F.

    1991-01-01

    Organic matter in the Upper Cretaceous Mancos Shale adjacent to the Tocito Sandstone in the San Juan Basin of New Mexico was characterized using organic petrology and organic geochemistry. Differences in the organic matter found in these regressive and transgressive offshore marine sediments have been documented and assessed within a sequence stratigraphic framework. The regressive Lower Mancos Shale below the Tocito Sandstone contains abundant well preserved phytoclasts and correspondingly low hydrogen indices. Total organic carbon values for the regressive shale are low. Sediments from the transgressive systems tract (Tocito Sandstone and overlying Upper Mancos Shale) contain less terrestrially derived organic matter, more amorphous non-structured protistoclasts, higher hydrogen indices and more total organic carbon. Advanced stages of degradation are characteristic of the phytoclasts found in the transgressive shale. Amorphous material in the transgressive shale fluoresces strongly while that found in the regressive shale is typically non-fluorescent. Data from pyrolysis-gas chromatography confirm these observations. These differences are apparently related to the contrasting depositional styles that were active on the shelf during regression and subsequent transgression. It is suggested that data from organic petrology and organic geochemistry provide greater resolution in sedimentologic and stratigraphic interpretations, particularly when working with basinward, fine-grained sediments. Petroleum source potential for the regressive Lower Mancos Shale below the Tocito Sandstone is poor. Based on abundant fluorescent amorphous material, high hydrogen indices, and high total organic carbon, the transgressive Upper Mancos Shale above the Tocito Sandstone possesses excellent source potential. This suggests that appreciable source potential can be found in offshore, fine-grained sediments of the transgressive systems tract below the condensed section and associated

  4. Quantifying the degradation of organic matter in marine sediments: A review and synthesis

    NASA Astrophysics Data System (ADS)

    Arndt, Sandra; Jørgensen, B. B.; LaRowe, D. E.; Middelburg, J. J.; Pancost, R. D.; Regnier, P.

    2013-08-01

    Quantifying the rates of biogeochemical processes in marine sediments is essential for understanding global element cycles and climate change. Because organic matter degradation is the engine behind benthic dynamics, deciphering the impact that various forces have on this process is central to determining the evolution of the Earth system. Therefore, recent developments in the quantitative modeling of organic matter degradation in marine sediments are critically reviewed. The first part of the review synthesizes the main chemical, biological and physical factors that control organic matter degradation in sediments while the second part provides a general review of the mathematical formulations used to model these processes and the third part evaluates their application over different spatial and temporal scales. Key transport mechanisms in sedimentary environments are summarized and the mathematical formulation of the organic matter degradation rate law is described in detail. The roles of enzyme kinetics, bioenergetics, temperature and biomass growth in particular are highlighted. Alternative model approaches that quantify the degradation rate constant are also critically compared. In the third part of the review, the capability of different model approaches to extrapolate organic matter degradation rates over a broad range of temporal and spatial scales is assessed. In addition, the structure, functions and parameterization of more than 250 published models of organic matter degradation in marine sediments are analyzed. The large range of published model parameters illustrates the complex nature of organic matter dynamics, and, thus, the limited transferability of these parameters from one site to another. Compiled model parameters do not reveal a statistically significant correlation with single environmental characteristics such as water depth, deposition rate or organic matter flux. The lack of a generic framework that allows for model parameters to be

  5. Characterizing The Microbial Lability And Isotopic (14C, 13C) Signatures Of Marine Organic Matter With A Novel Culture Vessel System

    NASA Astrophysics Data System (ADS)

    Beaupre, S. R.; Mahmoudi, N.; Pearson, A.

    2016-02-01

    The rate at which non-living organic matter is respired in the ocean is an unconstrained and important property of the marine carbon cycle. Studies of inherent mineralization rates are complicated by the fact that marine organic matter is a mixture of compounds that vary in reactivity and concentration. While natural radiocarbon ages (14C, half-life = 5730 yr) have served as proxies for lability, they have not been used extensively to characterize that fraction of marine organic matter that is biologically accessible. To address this problem, we developed a novel batch culture system to monitor the time-dependent production rates and isotopic signatures of CO2 released during microbial degradation of natural organic matter. The system simulated a nepheloid layer by maintaining a slurry of decarbonated sediment and minimal media (M9) in a custom 2-liter culture vessel. The natural microbial community was allowed to develop within the sediment, and respired CO2 was continuously sparged from the medium with helium and oxygen, quantified in real time with an infrared gas analyzer, and isolated as a series of contiguous fractions for subsequent isotopic (∆14C, d13C) characterization. Control experiments indicated the accumulation of just 4.5 mg of background carbon per hour of continuous gas flow, which constituted ≤ 10 % of the respired carbon mass in each fraction. Since ∆14C values are conserved during molecular transformations, this low-blank system enables the detection of subtle shifts in the "age" of organic matter respired during the course of a culture experiment. Analyses of sediments from Falmouth, MA revealed both a variable CO2 production rate and an increase in post-bomb ∆14C values during a 10-day incubation. This suggests that the microbial lability of organic matter at this site decreased non-linearly with apparent 14C age, and that the least labile fraction observed was not more than 50 years old. These results underscore the complex

  6. Low acetate concentrations favor polyphosphate-accumulating organisms over glycogen-accumulating organisms in enhanced biological phosphorus removal from wastewater.

    PubMed

    Tu, Yunjie; Schuler, Andrew J

    2013-04-16

    Glycogen-accumulating organisms (GAOs) are thought to compete with polyphosphate-accumulating organisms (PAOs) in enhanced biological phosphorus removal (EBPR) wastewater treatment systems. A laboratory sequencing batch reactor (SBR) was operated for one year to test the hypothesis that PAOs have a competitive advantage at low acetate concentrations, with a focus on low pH conditions previously shown to favor GAOs. PAOs dominated the system under conventional SBR operation with rapid acetate addition (producing high in-reactor concentrations) and pH values of 7.4-8.4. GAOs dominated when the pH was decreased (6.4-7.0). Decreasing the acetate addition rate led to very low reactor acetate concentrations, and PAOs recovered, supporting the study hypothesis. When the acetate feed rate was increased, EBPR failed again. Dominant PAOs and GAOs were Candidatus Accumulibacter phosphatis and Defluviicoccus Cluster 2, respectively, according to fluorescent in situ hybridization and 454 pyrosequencing. Surprisingly, GAOs were not the immediate causes of PAO failures, based on functional and population measurements. Pyrosequencing results suggested Dechloromonas and Tetrasphaera spp. may have also been PAOs, and additional potential GAOs were also identified. Full-scale systems typically have lower in-reactor acetate concentrations than laboratory SBRs, and so, previous laboratory studies may have overestimated the practical importance of GAOs as causes of EBPR failure.

  7. Spectral band selection for classification of soil organic matter content

    NASA Technical Reports Server (NTRS)

    Henderson, Tracey L.; Szilagyi, Andrea; Baumgardner, Marion F.; Chen, Chih-Chien Thomas; Landgrebe, David A.

    1989-01-01

    This paper describes the spectral-band-selection (SBS) algorithm of Chen and Landgrebe (1987, 1988, and 1989) and uses the algorithm to classify the organic matter content in the earth's surface soil. The effectiveness of the algorithm was evaluated comparing the results of classification of the soil organic matter using SBS bands with those obtained using Landsat MSS bands and TM bands, showing that the algorithm was successful in finding important spectral bands for classification of organic matter content. Using the calculated bands, the probabilities of correct classification for climate-stratified data were found to range from 0.910 to 0.980.

  8. Microbiological Insights of the Cycling of Chloroperoxidase-Reacted Organic Matter

    NASA Astrophysics Data System (ADS)

    Krzmarzick, M. J.; Boothe, M.; Lim, M. L.; Wang, X.; Brooks, M.

    2016-12-01

    Chloroperoxidase (CPO) enzymes from fungi are one mechanism in which organic matter is halogenated in terrestrial soils. In microcosm experiments, 17 groups of bacteria were found to substantially become enriched upon CPO-reacted organic matter amendment (CPO-OM). Though some enriched groups were organohalide-respiring bacteria, most were not related to any cultured isolates of bacteria and were either loosely linked to organohalide-degrading cultures or not at all. The large diversity of uncultured bacteria that is enriched from this substrate raises new questions regarding the pathways and mechanisms of the turnover of natural organochlorides. Upon changes in organic matter source material, salinity, temperature, and fermentable substrate, large changes in the CPO-OM enrichment culture occurred due to salinity, temperature, and fermentable substrate, though organic matter source material had a minimal effect. Thus, changes in geophysical conditions, not organic matter (pine forest vs oak forest), dominate the selection of bacteria implicated in the turnover of natural organochlorides. In related experiments, the CPO-OM enrichment culture expresses increased activity towards the dechlorination of chlorinated ethenes, indicating a direct connection between natural organochloride turnover and anthropogenic organochloride degradation and bioremediation, and could partly explain the heterogeneity of natural bioremediation potential at contaminated sites.

  9. Evolution of soil organic matter changes using pyrolysis and metabolic indices: a comparison between organic and mineral fertilization.

    PubMed

    Marinari, S; Masciandaro, G; Ceccanti, B; Grego, S

    2007-09-01

    The aim of this study was to evaluate chemical and biochemical changes of organic matter in fertilized (ammonium nitrate) and amended (vermicompost and manure) soils using pyrolysis and metabolic indices. The metabolic potential [dehydrogenase (DH-ase)/water soluble organic carbon (WSOC)], the metabolic quotient (qCO2) and the microbial quotient (Cmic:Corg) were calculated as indices of soil organic matter evolution. Pyrolysis-gas chromatography (Py-GC) was used to study structural changes in the organic matter. Carbon forms and microbial biomass have been measured by dichromate oxidation and fumigation-extraction methods, respectively. Dehydrogenase activity has been tested using INT (p-Iodonitrotetrazolium violet) as substrate. The results showed that organic amendment increased soil microbial biomass and its activity which were strictly related to pyrolytic mineralization and humification indices (N/O, B/E3). Mineral fertilization caused a greater alteration of native soil organic matter than the organic amendments, in that a high release of WSOC and relatively large amounts of aliphatic pyrolytic products, were observed. Therefore, the pyrolysis and metabolic indices provided similar and complementary information on soil organic matter changes after mineral and organic fertilization.

  10. Response of organic matter quality in permafrost soils to warming

    NASA Astrophysics Data System (ADS)

    Plaza, C.; Pegoraro, E.; Schuur, E.

    2016-12-01

    Global warming is predicted to thaw large quantities of the perennially frozen organic matter stored in northern permafrost soils. Upon thaw, this organic matter will be exposed to lateral export to water bodies and to microbial decomposition, which may exacerbate climate change by releasing significant amounts of greenhouse gases. To gain an insight into these processes, we investigated how the quality of permafrost soil organic matter responded to five years of warming. In particular, we sampled control and experimentally warmed soils in 2009 and 2013 from an experiment established in 2008 in a moist acidic tundra ecosystem in Healy, Alaska. We examined surface organic (0 to 15 cm), deep organic (15 to 35 cm), and mineral soil layers (35 to 55 cm) separately by means of stable isotope analysis (δ13C and δ15N) and solid-state 13C nuclear magnetic resonance. Compared to the control, the experimental warming did not affect the isotopic and molecular composition of soil organic matter across the depth profile. However, we did find significant changes with time. In particular, in the surface organic layer, δ13C decreased and alkyl/O-alkyl ratio increased from 2009 to 2013, which indicated variations in soil organic sources (e.g., changes in vegetation) and accelerated decomposition. In the deep organic layer, we found a slight increase in δ15N with time. In the mineral layer, δ13C values decreased slightly, whereas alkyl C/O-alkyl ratio increased, suggesting a preferential loss of relatively more degraded organic matter fractions probably by lateral transport by water flowing through the soil. Acknowledgements: This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 654132. Web site: http://vulcan.comule.com

  11. A comparison of soil organic matter physical fractionation methods

    NASA Astrophysics Data System (ADS)

    Duddigan, Sarah; Alexander, Paul; Shaw, Liz; Collins, Chris

    2017-04-01

    Selecting a suitable physical fractionation to investigate soil organic matter dynamics from the plethora that are available is a difficult task. An initial investigation of four different physical fractionation methods was conducted (i) Six et al. (2002); (ii) Zimmermann et al. (2007); (iii) Sohi et al. (2001); and (iv) Plaza et al. (2013). Soils used for this were from a long-term organic matter field plot study where a sandy loam soil was subjected to the following treatments: Peat (Pt), Horse Manure (H), Garden Compost (GCf), Garden Compost at half rate (GCh), and a bare plot control (BP). Although each of these methods involved the isolation of unique fractions, in the interest of comparison, each fraction was categorised as either being (i) physically protected (i.e. in aggregates); (ii) chemically protected (such as in organo-mineral complexes); or (iii) unprotected by either of these mechanisms (so-called 'free' organic matter). Regardless of the fractionation method used, a large amount of the variation in total C contents of the different treated soils is accounted for by the differences in unprotected particulate organic matter. When comparing the methods to one another there were no consistent differences in carbon content in the physically protected, chemically protected, or unprotected fractions as operationally defined across all the five organic matter treatments. Therefore fractionation method selection, for this research, was primarily driven by the practicalities of conducting each method in the lab. All of the methods tested had their limitations, for use in this research. This is not a criticism of the methods themselves but largely a result of the lack of suitability for these particular samples. For example, samples that contain a lot of gravel can lead to problems for methods that use size distribution for fractionation. Problems can also be encountered when free particulate organic matter contributes a large proportion of the sample

  12. Peat decomposability in managed organic soils in relation to land use, organic matter composition and temperature

    NASA Astrophysics Data System (ADS)

    Bader, Cédric; Müller, Moritz; Schulin, Rainer; Leifeld, Jens

    2018-02-01

    Organic soils comprise a large yet fragile carbon (C) store in the global C cycle. Drainage, necessary for agriculture and forestry, triggers rapid decomposition of soil organic matter (SOM), typically increasing in the order forest < grassland < cropland. However, there is also large variation in decomposition due to differences in hydrological conditions, climate and specific management. Here we studied the role of SOM composition on peat decomposability in a variety of differently managed drained organic soils. We collected a total of 560 samples from 21 organic cropland, grassland and forest soils in Switzerland, monitored their CO2 emission rates in lab incubation experiments over 6 months at two temperatures (10 and 20 °C) and related them to various soil characteristics, including bulk density, pH, soil organic carbon (SOC) content and elemental ratios (C / N, H / C and O / C). CO2 release ranged from 6 to 195 mg CO2-C g-1 SOC at 10 °C and from 12 to 423 mg g-1 at 20 °C. This variation occurring under controlled conditions suggests that besides soil water regime, weather and management, SOM composition may be an underestimated factor that determines CO2 fluxes measured in field experiments. However, correlations between the investigated chemical SOM characteristics and CO2 emissions were weak. The latter also did not show a dependence on land-use type, although peat under forest was decomposed the least. High CO2 emissions in some topsoils were probably related to the accrual of labile crop residues. A comparison with published CO2 rates from incubated mineral soils indicated no difference in SOM decomposability between these soil classes, suggesting that accumulation of recent, labile plant materials that presumably account for most of the evolved CO2 is not systematically different between mineral and organic soils. In our data set, temperature sensitivity of decomposition (Q10 on average 2.57 ± 0.05) was the same for all land uses but lowest below 60

  13. Organic matter content of soil after logging of fir and redwood forests

    Treesearch

    Philip B. Durgin

    1980-01-01

    Organic matter in soil controls a variety of soil properties. A study in Humboldt County, California, evaluated changes in percentages of organic matter in soil as a function of time after timber harvest and soil depth in fir and redwood forests. To assess organic matter content, samples were taken from cutblocks of various ages in soil to depths of 1.33 m. Results...

  14. Soil Organic Matter Content Effects on Dermal Pesticide ...

    EPA Pesticide Factsheets

    Agricultural landscapes serve as active amphibian breeding grounds despite their seemingly poor habitat value. Activity of adults and dispersal of metamorphs to and from agricultural ponds occurs in most species from spring through late summer or early fall, a time that coincides with pesticide applications on farm fields and crops. In terrestrial landscapes, dermal contact with contaminated soil and plant matter may lead to bioconcentration as well as lethal and sublethal effects in amphibians.Although the physiological structure of the amphibian dermis may facilitate pesticide uptake, soil properties may ultimately dictate bioavailability of pesticides in terrestrial habitats. The organic matter fraction of soil readily binds to pesticides, potentially decreasing the availability of pesticides adhering to biological matter. Soil partition coefficient organic carbon content and soil-specific Koc values may be important to indicating pesticide bioavailability and potential bioconcentration in amphibians. Our study was designed to evaluate dermal uptake of five pesticide active ingredients on either high or low organic matter soils. We predicted that amphibian body burdens would be a function of soil carbon content or Koc. with greater bioconcentration in individuals exposed to pesticides on sa

  15. Properties and evolution of dissolved organic matter during co-composting of dairy manure and Chinese herbal residues.

    PubMed

    Li, Qunliang; Lu, Yanyu; Guo, Xiaobo; Shan, Guangchun; Huang, Junhao

    2017-03-01

    Composting is an effective method in treating solid organic wastes, in which dissolved organic matter (DOM) plays an important role in transformation of organic matter and microbial activity. Therefore, an understanding of the properties and evolution of DOM during composting is crucial. In this study, DOM was studied using elemental analysis, spectroscopic analysis (UV-vis, FTIR, and pyrolysis-GC/MS), and colloidal analysis during a 120-day composting. Results showed that the content of N and O in DOM increased while C and H content declined progressively over the composting time. Aliphatic C-H stretching, aromatic C=C or C=O stretching of amide groups, and C-O stretch (carbohydrates) showed an obvious decrease, while COO- and C-N groups had a significant increase. The evolution of DOM indicated a gradual decrease of the lipid and polysaccharide fractions, whereas an increase of aromatic and nitrogenous compounds was observed. The DOM also showed a more stable status, and an accumulation of small molecular compounds occurred with composting proceeded. Taken together, these results shed a good insight into the properties and evolution of DOM during a composting process.

  16. Bacterial biomarkers thermally released from dissolved organic matter

    USGS Publications Warehouse

    Greenwood, P.F.; Leenheer, J.A.; McIntyre, C.; Berwick, L.; Franzmann, P.D.

    2006-01-01

    Hopane biomarker products were detected using microscale sealed vessel (MSSV) pyrolysis gas chromatography-mass spectrometry (GC-MS) analysis of dissolved organic matter from natural aquatic systems colonised by bacterial populations. MSSV pyrolysis can reduce the polyhydroxylated alkyl side chain of bacteriohopanepolyols, yielding saturated hopane products which are more amenable to GC-MS detection than their functionalised precursors. This example demonstrates how the thermal conditions of MSSV pyrolysis can reduce the biologically-inherited structural functionality of naturally occurring organic matter such that additional structural fragments can be detected using GC methods. This approach complements traditional analytical pyrolysis methods by providing additional speciation information useful for establishing the structures and source inputs of recent or extant organic material. ?? 2006.

  17. Influence of elevated alkalinity and natural organic matter (NOM) on tissue-specific metal accumulation and reproductive performance in fathead minnows during chronic, multi-trophic exposures to a metal mine effluent.

    PubMed

    Ouellet, Jacob D; Dubé, Monique G; Niyogi, Som

    2013-09-01

    Metal bioavailability in aquatic organisms is known to be influenced by various water chemistry parameters. The present study examined the influence of alkalinity and natural organic matter (NOM) on tissue-specific metal accumulation and reproductive performance of fathead minnows (Pimephales promelas) during environmentally relevant chronic exposures to a metal mine effluent (MME). Sodium bicarbonate (NaHCO3) or NOM (as commercial humic acid) were added to a Canadian MME [45 percent process water effluent (PWE)] in order to evaluate whether increases in alkalinity (3-4 fold) or NOM (~1.5-3mg/L dissolved organic carbon) would reduce metal accumulation and mitigate reproductive toxicity in fathead minnows during a 21-day multi-trophic exposure. Eleven metals (barium, boron, cobalt, copper, lithium, manganese, molybdenum, nickel, rubidium, selenium, and strontium) were elevated in the 45 percent PWE relative to the reference water. Exposure to the unmodified 45 percent PWE resulted in a decrease of fathead minnow egg production (~300 fewer eggs/pair) relative to the unmodified reference water, over the 21-day exposure period. Water chemistry modifications produced a modest decrease in free ion activity of some metals (as shown by MINTEQ, Version 3) in the 45 percent PWE exposure water, but did not alter the metal burden in the treatment-matched larval Chironomus dilutus (the food source of fish during exposure). The tissue-specific metal accumulation increased in fish exposed to the 45 percent PWE relative to the reference water, irrespective of water chemistry modifications, and the tissue metal concentrations were found to be similar between fish in the unmodified and modified 45 percent PWE (higher alkalinity or NOM) treatments. Interestingly however, increased alkalinity and NOM markedly improved fish egg production both in the reference water (~500 and ~590 additional eggs/pair, respectively) and 45 percent PWE treatments (~570 and ~260 additional eggs

  18. Influence of dissolved organic carbon content on modelling natural organic matter acid-base properties.

    PubMed

    Garnier, Cédric; Mounier, Stéphane; Benaïm, Jean Yves

    2004-10-01

    Natural organic matter (NOM) behaviour towards proton is an important parameter to understand NOM fate in the environment. Moreover, it is necessary to determine NOM acid-base properties before investigating trace metals complexation by natural organic matter. This work focuses on the possibility to determine these acid-base properties by accurate and simple titrations, even at low organic matter concentrations. So, the experiments were conducted on concentrated and diluted solutions of extracted humic and fulvic acid from Laurentian River, on concentrated and diluted model solutions of well-known simple molecules (acetic and phenolic acids), and on natural samples from the Seine river (France) which are not pre-concentrated. Titration experiments were modelled by a 6 acidic-sites discrete model, except for the model solutions. The modelling software used, called PROSECE (Programme d'Optimisation et de SpEciation Chimique dans l'Environnement), has been developed in our laboratory, is based on the mass balance equilibrium resolution. The results obtained on extracted organic matter and model solutions point out a threshold value for a confident determination of the studied organic matter acid-base properties. They also show an aberrant decreasing carboxylic/phenolic ratio with increasing sample dilution. This shift is neither due to any conformational effect, since it is also observed on model solutions, nor to ionic strength variations which is controlled during all experiments. On the other hand, it could be the result of an electrode troubleshooting occurring at basic pH values, which effect is amplified at low total concentration of acidic sites. So, in our conditions, the limit for a correct modelling of NOM acid-base properties is defined as 0.04 meq of total analysed acidic sites concentration. As for the analysed natural samples, due to their high acidic sites content, it is possible to model their behaviour despite the low organic carbon concentration.

  19. Multidrug Efflux Transporters Limit Accumulation of Inorganic, but Not Organic, Mercury in Sea Urchin Embryos

    PubMed Central

    Bošnjak, Ivana; Uhlinger, Kevin R.; Heim, Wesley; Smital, Tvrtko; Franekić-Čolić, Jasna; Coale, Kenneth; Epel, David; Hamdoun, Amro

    2011-01-01

    Mercuric compounds are persistent global pollutants that accumulate in marine organisms and in humans who consume them. While the chemical cycles and speciation of mercury in the oceans are relatively well described, the cellular mechanisms that govern which forms of mercury accumulate in cells and why they persist are less understood. In this study we examined the role of multidrug efflux transport in the differential accumulation of inorganic (HgCl2) and organic (CH3HgCl) mercury in sea urchin (Strongylocentrotus purpuratus) embryos. We found that inhibition of MRP/ABCC-type transporters increases intracellular accumulation of inorganic mercury but had no effect on accumulation of organic mercury. Similarly, pharmacological inhibition of metal conjugating enzymes by ligands GST/GSH significantly increases this antimitotic potency of inorganic mercury, but had no effect on the potency of organic mercury. Our results point to MRP-mediated elimination of inorganic mercury conjugates as a cellular basis for differences in the accumulation and potency of the two major forms of mercury found in marine environments. PMID:19924972

  20. [Effects of controlled release nitrogen fertilizer application on dry matter accumulation and nitrogen balance of summer maize].

    PubMed

    Si, Dong-Xia; Cui, Zhen-Ling; Chen, Xin-Ping; Lü, Fu-Tang

    2014-06-01

    Effects of four controlled release nitrogen (N) fertilizers, including two kinds of polyester coated urea (Ncau, CRU) and phosphate (NhnP) and humic acid (NhnF) coated urea on assimilates accumulation and nitrogen balance of summer maize were investigated in a mode of one-time fertilization at the regional N recommended rate. The results showed that the N release curves of the two controlled release fertilizers CRU and Ncau matched well with the summer maize N uptake. Compared with the regional N recommendation rate, CRU could increase maize yield by 4.2% and Ncau could maintain the same yield level. CRU significantly increased the dry matter accumulation rate after anthesis of summer maize, but Ncau markedly increased the dry matter accumulated ratio before anthesis. Meanwhile, CRU could reduce the apparent N losses by 19 kg N x hm(-2) in the case of large precipitation. However, NhnF and NhnP caused the yield losses by 0.1%-8.9%, and enhanced the apparent N losses. Therefore, both CRU and Ncau with one-time fertilization could be a simplified alternative to the "total control, staging regulation" fertilization technique at the regional N recommended rate for summer maize production.

  1. THE INFLUENCE OF ORGANIC MATTER QUALITY ON THE TOXICITY AND PARTIONING OF SEDIMENT-ASSOCIATED FLUORANTHENE

    EPA Science Inventory

    Organic matter in sediment is derived from many sources, including dead plants and animals, fecal matter, and flocculated colloidal organic matter. hemical partitioning and toxicity of nonpolar organic contaminants is strongly affected by the quantity of sediment organic matter. ...

  2. Perchlorate-induced combustion of organic matter with variable molecular weights: Implications for Mars missions

    NASA Astrophysics Data System (ADS)

    Sephton, Mark A.; Lewis, James M. T.; Watson, Jonathan S.; Montgomery, Wren; Garnier, Carole

    2014-11-01

    Instruments on the Viking landers and Curiosity rover analyzed samples of Mars and detected carbon dioxide and organic compounds of uncertain origin. Mineral-assisted reactions are leading to uncertainty, particularly those involving perchlorate minerals which thermally decompose to produce chlorine and oxygen which can then react with organic matter to generate organochlorine compounds and carbon dioxide. Although generally considered a problem for interpretation, the release profiles of generated gases can indicate the type of organic matter present. We have performed a set of experiments with perchlorate and organic matter of variable molecular weights. Results indicate that organic susceptibility to thermal degradation and mineral-assisted reactions is related to molecular weight. Low molecular weight organic matter reacts at lower temperatures than its high molecular weight counterparts. The natural occurrence and association of organic matter with differing molecular weights helps to discriminate between contamination (usually low molecular weight organic matter only) and indigenous carbon (commonly low and high molecular weight organic matter together). Our results can be used to provide insights into data returning from Mars.

  3. Insights in groundwater organic matter from Liquid Chromatography-Organic Carbon Detection

    NASA Astrophysics Data System (ADS)

    Rutlidge, H.; Oudone, P.; McDonough, L.; Andersen, M. S.; Baker, A.; Meredith, K.; O'Carroll, D. M.

    2017-12-01

    Understanding the processes that control the concentration and characteristics of organic matter in groundwater has important implications for the terrestrial global carbon budget. Liquid Chromatography - Organic Carbon Detection (LC-OCD) is a size-exclusion based chromatography technique that separates the organic carbon into molecular weight size fractions of biopolymers, humic substances, building blocks (degradation products of humic substances), low molecular weight acids and low molecular weight neutrals. Groundwater and surface water samples were collected from a range of locations in Australia representing different surface soil, land cover, recharge type and hydrological properties. At one site hyporheic zone samples were also collected from beneath a stream. The results showed a general decrease in the aromaticity and molecular weight indices going from surface water, hyporheic downwelling and groundwater samples. The aquifer substrate also affected the organic composition. For example, groundwater samples collected from a zone of fractured rock showed a relative decrease in the proportion of humic substances, suggestive of sorption or degradation of humic substances. This work demonstrates the potential for using LC-OCD in elucidating the processes that control the concentration and characteristics of organic matter in groundwater.

  4. Abiotic Bromination of Soil Organic Matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Leri, Alessandra C.; Ravel, Bruce

    Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide andmore » assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.« less

  5. Abiotic Bromination of Soil Organic Matter.

    PubMed

    Leri, Alessandra C; Ravel, Bruce

    2015-11-17

    Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide and assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.

  6. Organic matter controls of iron incorporation in growing sea ice

    NASA Astrophysics Data System (ADS)

    Janssens, Julie; Meiners, Klaus M.; Townsend, Ashley T.; Lannuzel, Delphine

    2018-03-01

    This study presents the first laboratory-controlled sea-ice growth experiment conducted under trace metal clean conditions. The role played by organic matter, in the incorporation of iron (Fe) into sea ice was investigated by means of laboratory ice-growth experiments using a titanium cold-finger apparatus. Experiments were also conducted to understand the role of extracellular polymeric substances (EPS) in the enrichment of ammonium in sea ice. Sea ice was grown from several seawater solutions containing different quantities and qualities of particulate Fe (PFe), dissolved Fe (DFe) and organic matter. Sea ice and seawater were analyzed for particulate organic carbon and nitrogen, macro-nutrients, extracellular EPS, PFe and DFe, and particulate aluminium. The experiments showed that biogenic PFe is preferentially incorporated into sea ice compared to lithogenic PFe. Furthermore, sea ice grown from ultra-violet (UV) and non-UV treated seawaters exhibits contrasting incorporation rates of organic matter and Fe. Whereas the effects of UV-treatments were not always significant, we do find indications that the type or organic matter controls the enrichment of Fe in forming sea ice.. Specifically, we come to the conclusion that the incorporation of DFe is favored by the presence of organic ligands in the source solution.

  7. Soil Water Content Sensor Response to Organic Matter Content under Laboratory Conditions

    PubMed Central

    Fares, Ali; Awal, Ripendra; Bayabil, Haimanote K.

    2016-01-01

    Studies show that the performance of soil water content monitoring (SWCM) sensors is affected by soil physical and chemical properties. However, the effect of organic matter on SWCM sensor responses remains less understood. Therefore, the objectives of this study are to (i) assess the effect of organic matter on the accuracy and precision of SWCM sensors using a commercially available soil water content monitoring sensor; and (ii) account for the organic matter effect on the sensor’s accuracy. Sand columns with seven rates of oven-dried sawdust (2%, 4%, 6%, 8%, 10%, 12% and 18% v/v, used as an organic matter amendment), thoroughly mixed with quartz sand, and a control without sawdust were prepared by packing quartz sand in two-liter glass containers. Sand was purposely chosen because of the absence of any organic matter or salinity, and also because sand has a relatively low cation exchange capacity that will not interfere with the treatment effect of the current work. Sensor readings (raw counts) were monitored at seven water content levels (0, 0.02, 0.04, 0.08, 0.12, 0.18, 0.24, and 0.30 cm3 cm−3) by uniformly adding the corresponding volumes of deionized water in addition to the oven-dry one. Sensor readings were significantly (p < 0.05) affected by the organic matter level and water content. Sensor readings were strongly correlated with the organic matter level (R2 = 0.92). In addition, the default calibration equation underestimated the water content readings at the lower water content range (<0.05 cm3 cm−3), while it overestimated the water content at the higher water content range (>0.05 cm3 cm−3). A new polynomial calibration equation that uses raw count and organic matter content as covariates improved the accuracy of the sensor (RMSE = 0.01 cm3 cm−3). Overall, findings of this study highlight the need to account for the effect of soil organic matter content to improve the accuracy and precision of the tested sensor under different soils and

  8. Soil Water Content Sensor Response to Organic Matter Content under Laboratory Conditions.

    PubMed

    Fares, Ali; Awal, Ripendra; Bayabil, Haimanote K

    2016-08-05

    Studies show that the performance of soil water content monitoring (SWCM) sensors is affected by soil physical and chemical properties. However, the effect of organic matter on SWCM sensor responses remains less understood. Therefore, the objectives of this study are to (i) assess the effect of organic matter on the accuracy and precision of SWCM sensors using a commercially available soil water content monitoring sensor; and (ii) account for the organic matter effect on the sensor's accuracy. Sand columns with seven rates of oven-dried sawdust (2%, 4%, 6%, 8%, 10%, 12% and 18% v/v, used as an organic matter amendment), thoroughly mixed with quartz sand, and a control without sawdust were prepared by packing quartz sand in two-liter glass containers. Sand was purposely chosen because of the absence of any organic matter or salinity, and also because sand has a relatively low cation exchange capacity that will not interfere with the treatment effect of the current work. Sensor readings (raw counts) were monitored at seven water content levels (0, 0.02, 0.04, 0.08, 0.12, 0.18, 0.24, and 0.30 cm³ cm(-3)) by uniformly adding the corresponding volumes of deionized water in addition to the oven-dry one. Sensor readings were significantly (p < 0.05) affected by the organic matter level and water content. Sensor readings were strongly correlated with the organic matter level (R² = 0.92). In addition, the default calibration equation underestimated the water content readings at the lower water content range (<0.05 cm³ cm(-3)), while it overestimated the water content at the higher water content range (>0.05 cm³ cm(-3)). A new polynomial calibration equation that uses raw count and organic matter content as covariates improved the accuracy of the sensor (RMSE = 0.01 cm³ cm(-3)). Overall, findings of this study highlight the need to account for the effect of soil organic matter content to improve the accuracy and precision of the tested sensor under different soils and

  9. Study of Organic Matter in Soils of the Amazon Region Employing Laser Induced Fluorescence Spectroscopy

    NASA Astrophysics Data System (ADS)

    Tadini, Amanda Maria; Nicolodelli, Gustavo; Mounier, Stéphane; Montes, Célia Regina; Marcondes Bastos Pereira Milori, Débora

    2014-05-01

    were a discontinuity in the accumulation of humified organic matter in the progress of depth. A hypothesis for occurrence of this behavior might be due to texture sandy and aggregate stability present in these soils, which can be difficulty the degradation of labile chains organic matter, thus promoting carbon sequestration in the long time in these soils. References [1]-Milori, D. M. B. P.; Galeti, H. V .A.; Martin-Neto, L.; Dieckow, J.; González-Pérez, M.; Bayer, C.; Salton, J. Organic matter study of whole soil samples using laser-induced fluorescense spectroscopy. Soil Science Society of America Journal, 70, 57-63, 2006. [2]-Martins, T.; Saab, S. C.; Milori, D. M. B. P.; Brinatti, A. M.; Rosa, J. A.; Cassaro, F. A. M.; Pires, L. F. Soil organic matter humification under diferente tillage managements evaluated by Laser Induced Fluorescence (LIF) and C/N ratio. Soil & Tillage Research, 111, 231-235, 2011. [3]-Milori, D. M. B. P.; Segnini, A.; Silva, W. T. L.; Posadas, A.; Mares, V.; Quiroz, R.; Martin-Neto, L. Emerging techniques for soil carbon measurements. Research Program on Climate Change, Agriculture and Food Security, nº 2, 2011. [4]-Senesi, N.; Plaza, C.; Brunetti, G.; Polo, A. A comparative survey of recente results on humic-like fractions in organic amendments and effects on native soil humic substances. Soil Biology & Biochemistry, 39, 1244-1262, 2007.

  10. Phenanthrene sorption with heterogeneous organic matter in a landfill aquifer material

    USGS Publications Warehouse

    Karapanagioti, H.K.; Sabatini, D.A.; Kleineidam, S.; Grathwohl, P.; Ligouis, B.

    1999-01-01

    Phenanthrene was used as a model chemical to study the sorption properties of Canadian River Alluvium aquifer material. Both equilibrium and kinetic sorption processes were evaluated through batch studies. The bulk sample was divided into subsamples with varying properties such as particle size, organic content, equilibration time, etc. in order to determine the effect of these properties on resulting sorption parameters. The data have been interpreted and the effect of experimental variables was quantified using the Freundlich isotherm model and a numerical solution of Fick's 2nd law in porous media. Microscopic organic matter characterization proved to be a valuable tool for explaining the results. Different organic matter properties and sorption mechanisms were observed for each soil subsample. Samples containing coal particles presented high Koc values. Samples with organic matter dominated by organic coatings on quartz grains presented low Koc values and contained a high percentage of fast sorption sites. The numerical solution of Fick's 2ndlaw requires the addition of two terms (fast and slow) in order to fit the kinetics of these heterogeneous samples properly. These results thus demonstrate the need for soil organic matter characterization in order to predict and explain the sorption properties of a soil sample containing heterogeneous organic matter and also the difficulty and complexity of modeling sorption in such samples.

  11. Insights into the nature of cometary organic matter from terrestrial analogues

    NASA Astrophysics Data System (ADS)

    Court, Richard W.; Sephton, Mark A.

    2012-04-01

    The nature of cometary organic matter is of great interest to investigations involving the formation and distribution of organic matter relevant to the origin of life. We have used pyrolysis-Fourier transform infrared (FTIR) spectroscopy to investigate the chemical effects of the irradiation of naturally occurring bitumens, and to relate their products of pyrolysis to their parent assemblages. The information acquired has then been applied to the complex organic matter present in cometary nuclei and comae. Amalgamating the FTIR data presented here with data from published studies enables the inference of other comprehensive trends within hydrocarbon mixtures as they are progressively irradiated in a cometary environment, namely the polymerization of lower molecular weight compounds; an increased abundance of polycyclic aromatic hydrocarbon structures; enrichment in 13C; reduction in atomic H/C ratio; elevation of atomic O/C ratio and increase in the temperature required for thermal degradation. The dark carbonaceous surface of a cometary nucleus will display extreme levels of these features, relative to the nucleus interior, while material in the coma will reflect the degree of irradiation experienced by its source location in the nucleus. Cometary comae with high methane/water ratios indicate a nucleus enriched in methane, favouring the formation of complex organic matter via radiation-induced polymerization of simple precursors. In contrast, production of complex organic matter is hindered in a nucleus possessing a low methane/water ration, with the complex organic matter that does form possessing more oxygen-containing species, such as alcohol, carbonyl and carboxylic acid functional groups, resulting from reactions with hydroxyl radicals formed by the radiolysis of the more abundant water. These insights into the properties of complex cometary organic matter should be of particular interest to both remote observation and space missions involving in situ

  12. Plants mediate soil organic matter decomposition in response to sea level rise.

    PubMed

    Mueller, Peter; Jensen, Kai; Megonigal, James Patrick

    2016-01-01

    Tidal marshes have a large capacity for producing and storing organic matter, making their role in the global carbon budget disproportionate to land area. Most of the organic matter stored in these systems is in soils where it contributes 2-5 times more to surface accretion than an equal mass of minerals. Soil organic matter (SOM) sequestration is the primary process by which tidal marshes become perched high in the tidal frame, decreasing their vulnerability to accelerated relative sea level rise (RSLR). Plant growth responses to RSLR are well understood and represented in century-scale forecast models of soil surface elevation change. We understand far less about the response of SOM decomposition to accelerated RSLR. Here we quantified the effects of flooding depth and duration on SOM decomposition by exposing planted and unplanted field-based mesocosms to experimentally manipulated relative sea level over two consecutive growing seasons. SOM decomposition was quantified as CO2 efflux, with plant- and SOM-derived CO2 separated via δ(13) CO2 . Despite the dominant paradigm that decomposition rates are inversely related to flooding, SOM decomposition in the absence of plants was not sensitive to flooding depth and duration. The presence of plants had a dramatic effect on SOM decomposition, increasing SOM-derived CO2 flux by up to 267% and 125% (in 2012 and 2013, respectively) compared to unplanted controls in the two growing seasons. Furthermore, plant stimulation of SOM decomposition was strongly and positively related to plant biomass and in particular aboveground biomass. We conclude that SOM decomposition rates are not directly driven by relative sea level and its effect on oxygen diffusion through soil, but indirectly by plant responses to relative sea level. If this result applies more generally to tidal wetlands, it has important implications for models of SOM accumulation and surface elevation change in response to accelerated RSLR. © 2015 John Wiley

  13. The forgotten part of carbon cycling: Organic matter storage and turnover in subsoils [SUBSOM

    NASA Astrophysics Data System (ADS)

    Marschner, B.

    2013-12-01

    In the past, carbon flux measurements and modelling have mostly considered the topsoil where C-concentrations, root densities and microbial activities are generally highest. However, depending on climate zone and land use, this soil compartment contains only 30-50% of the C-stocks of the first meter. If the deeper subsoil down to 3 m is also considered, the contribution of topsoil carbon stocks to total soil C-pools is only 20-40%. Another distinct property of subsoil organic matter is its high apparent 14C age. The 14C age of bulk soil organic matter below 30 cm depth generally increases continuously indicating mean residence times of several 103 to 104 years. Large pool size and high radiocarbon age suggest that subsoil OM has accumulated at very low rates over very long time periods and therefore appears to be very stable. In a review, several hypotheses for explaining why subsoil SOM is so seemingly old and inert are presented. Then a recently granted German research unit consisting of 9 subprojects from all soil science disciplines is introduced, which addresses these questions using field measurements of C-fluxes, 14C analyses and conducting field and lab experiments. 40-60% of soil C-pools are found below 40 cm depth (Data from Jobbagy & Jackson 2000).

  14. [Effects of different colored plastic film mulching and planting density on dry matter accumulation and yield of spring maize.

    PubMed

    Zhang, Lin Lin; Sun, Shi Jun; Chen, Zhi Jun; Jiang, Hao; Zhang, Xu Dong; Chi, Dao Cai

    2018-01-01

    In order to investigate the effect of different colored plastic film mulching and planting density on spring maize dry matter accumulation and yield in the rain-fed area of the Northeast China, a complete combination field experiment which was comprised by three types of mulching (non-mulching, transparent plastic film mulching and black plastic film mulching) and five densities (60000, 67500, 75000, 82500 and 90000 plants·hm -2 ), was conducted to analyze the water and heat effect, dry matter accumulation and yield of spring maize (Liangyu 99). The results showed that, compared with the other mulching treatments, the black plastic film mulching treatment significantly increased the maize dry matter accumulation and maize biomass by 3.2%-8.2%. In mature stage, the biomass increased firstly and then decreased with the increasing plant density. When planting density was 82500 plants·hm -2 , the biomass was the highest, which was 5.2%-28.3% higher than that of other plant density treatments. The mean soil temperature in prophase of transparent plastic film mulching treatment was 0.4-2.7 ℃ higher than that of other treatments, which accelerated the maize growth process and augmented the dry matter transportation amount (T), dry matter transportation efficiency (TE) and contribution rate of dry matter transportation to the grain yield (TC) of maize stalk and leaf. The T, TE, TC of leaf and leaf-stalk under 60000 plants·hm -2 treatment were the highest. The highest T, TE, TC of stalk were observed under 75000 plants·hm -2 treatment. In heading period, the water consumption and daily water consumption intensity of maize under the treatment of black film mulching were the largest, which were 9.4%-10.6% and 10.6%-24.5% higher than that of other mulching treatments, respectively. The highest water consumption and daily water consumption intensity were both obtained under 90000 plants·hm -2 treatment, which increased by 6.8%-15.7% and 7.0%-20.0% compared with other

  15. Soil Organic Matter (SOM): Molecular Simulations

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Andersen, Amity

    Molecular simulation is a powerful tool used to gain an atomistic, molecular, and nanoscale level understanding of the structure, dynamics, and interactions from adsorption on minerals and assembly in aggregates of soil organic matter (SOM). Given the importance of SOM fate and persistence in soils and the current knowledge gaps, applications of atomistic scale simulations to study the complex compounds in SOM and their interactions in self-assembled aggregates composed of different organic matter compounds and with mineral surfaces of different types common in soils are few and far between. Here, we describe various molecular simulation methods that are currently inmore » use in various areas and applicable to SOM research, followed by a brief survey of specific applications to SOM research and an illustration with our own recent efforts in this area. We conclude with an outlook and the challenges for future research in this area.« less

  16. Considerations over the distribution of the organic matter in the soil cover of Transylvania Plain (Romania)

    NASA Astrophysics Data System (ADS)

    Cacovean, Horia; Man, Titus; Rusu, Teodor

    2010-05-01

    Considerations over the distribution of the organic matter in the soil cover of Transylvania Plain (Romania) Horea Cacovean*, Titus Man**, Teodor Rusu*** *OSPA-Cluj- 1Faglui street, Cluj Napoca, RO-40048, Romania- turda75@yahoo.com ** Faculty of Geographie, University of Babes-Bolyai, 5-7 Clinicilor street, Cluj Napoca, RO-400006, Romania *** Faculty of Agriculture, USAMV, 3-5 Calea Manastur street,Cluj Napoca, RO-400372, Romania Soil degradation has become a major concern in the Transylvania Plain. Erosion, landslides, salinization, gleysation, and loss of humus are the main forms of soil deterioration in that region. This factsheet deals with the role of organic matter in soil productivity and the effects of various management practices and abandonment of the lands on soil organic matter. Soils in Transylvania Plain are analyzed concerning the amount of humus they contain. The influence of soil texture, climatic variables, and soil management on the qualitative soil humus content was studied in the top 20 cm of different managed loess soils of more then 100 profiles along a climosequence in that region. Taken together, soil, landform, land use and vegetation data suggest: (1) summit positions are relatively stable with immobilizing humus environments; (2) the content of humus increase progressively down steep at the contact with the floodplains; 3) without the influx of organic materials, erodible backslopes may become humus depleted as it happen the poor inputs of grassland and forest litter are mixed with surface soil horizon; 4) influx of mixed sediment and organic materials from backslopes maintains concentrations of humus on footslopes and toeslopes. This influence was more pronounced in the heavy clayey soils, suggesting that the accumulation of humus was enhanced by organo-mineral interactions. Entrenchment of drainage ways can circumvent these translocation processes. The results underscore the importance of functional connectivity between upland

  17. Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part II: Fatty acids and aldoses

    NASA Astrophysics Data System (ADS)

    Woulds, Clare; Middelburg, Jack J.; Cowie, Greg L.

    2014-07-01

    The activities of sediment-dwelling fauna are known to influence the rates of and pathways through which organic matter is cycled in marine sediments, and thus to influence eventual organic carbon burial or decay. However, due to methodological constraints, the role of faunal gut passage in determining the subsequent composition and thus degradability of organic matter is relatively little studied. Previous studies of organic matter digestion by benthic fauna have been unable to detect uptake and retention of specific biochemicals in faunal tissues, and have been of durations too short to fit digestion into the context of longer-term sedimentary degradation processes. Therefore this study aimed to investigate the aldose and fatty acid compositional alterations occurring to organic matter during gut passage by the abundant and ubiquitous polychaetes Hediste diversicolor and Arenicola marina, and to link these to longer-term changes typically observed during organic matter decay. This aim was approached through microcosm experiments in which selected polychaetes were fed with 13C-labelled algal detritus, and organisms, sediments, and faecal pellets were sampled at three timepoints over ∼6 weeks. Samples were analysed for their 13C-labelled aldose and fatty acid contents using GC-MS and GC-IRMS. Compound-selective net accumulation of biochemicals in polychaete tissues was observed for both aldoses and fatty acids, and the patterns of this were taxon-specific. The dominant patterns included an overall loss of glucose and polyunsaturated fatty acids; and preferential preservation or production of arabinose, microbial compounds (rhamnose, fucose and microbial fatty acids), and animal-synthesised fatty acids. These patterns may have been driven by fatty acid essentiality, preferential metabolism of glucose, and A. marina grazing on bacteria. Fatty acid suites in sediments from faunated microcosms showed greater proportions of saturated fatty acids and bacterial markers

  18. Refractory organic matter in coastal salt marshes-effect on C sequestration calculations.

    PubMed

    Leorri, Eduardo; Zimmerman, Andrew R; Mitra, Siddhartha; Christian, Robert R; Fatela, Francisco; Mallinson, David J

    2018-08-15

    The age and ability of salt marshes to accumulate and sequester carbon is often assessed using the carbon isotopic signatures (Δ 14 C and δ 13 C) of sedimentary organic matter. However, transfers of allochthonous refractory carbon (C RF ) from the watershed to marshes would not represent new C sequestration. To better understand how refractory carbon (C RF ) inputs affect assessments of marsh age and C sequestration, Δ 14 C and δ 13 C of both total organic carbon (TOC), C RF , and non-C RF organic matter fractions were measured in salt marshes from four contrasting systems on the North Atlantic coast. To our knowledge, no salt marsh sediment study has considered refractory or allochthonous carbon in carbon budget calculations or the impact on chronologies. Stable and radiogenic isotope data suggest that while TOC was dominated by autochthonous plant inputs, C RF was dominated by locally recycled or allochthonous C, the delivery of which was controlled by the size and slope of each watershed. Steep-gradient rivers analyzed delivered Δ 14 C-depleted C RF to their estuarine marshes, while the site located in the low-gradient river was associated with larger C RF content. Finally, the marsh isolated from riverine input contained the least fraction of TOC as C RF . Laterally transported C RF caused only a small offset in Δ 14 C in relation to TOC in low-gradient systems (average Δ 14 C offset was -44.4 and -24.2‰ at each location). However, the presence of allochthonous Δ 14 C-depleted C RF in sediments of steep-gradient rivers led to large overestimates of the time of organic matter deposition (i.e. apparent age was older than the 'true' time of deposition) (Δ 14 C offset ranged from -170.6 to -528.9‰). Further, reliance on TOC or loss on ignition analyses to calculate C sequestration by marshes might produce overestimates of at least as much as 10 to 20% since neither account for the lateral transport of allochthonous carbon. Copyright © 2018 Elsevier B

  19. Mapping forest soil organic matter on New Jersey's coastal plain

    Treesearch

    Brian J. Clough; Edwin J. Green; Richard B. Lathrop

    2012-01-01

    Managing forest soil organic matter (SOM) stocks is a vital strategy for reducing the impact of anthropogenic carbon dioxide emissions. However, the SOM pool is highly variable, and developing accurate estimates to guide management decisions has remained a difficult task. We present the results of a spatial model designed to map soil organic matter for all forested...

  20. Selenium accumulation by plants

    PubMed Central

    White, Philip J.

    2016-01-01

    Background Selenium (Se) is an essential mineral element for animals and humans, which they acquire largely from plants. The Se concentration in edible plants is determined by the Se phytoavailability in soils. Selenium is not an essential element for plants, but excessive Se can be toxic. Thus, soil Se phytoavailability determines the ecology of plants. Most plants cannot grow on seleniferous soils. Most plants that grow on seleniferous soils accumulate <100 mg Se kg–1 dry matter and cannot tolerate greater tissue Se concentrations. However, some plant species have evolved tolerance to Se, and commonly accumulate tissue Se concentrations >100 mg Se kg–1 dry matter. These plants are considered to be Se accumulators. Some species can even accumulate Se concentrations of 1000–15 000 mg Se kg–1 dry matter and are called Se hyperaccumulators. Scope This article provides an overview of Se uptake, translocation and metabolism in plants and highlights the possible genetic basis of differences in these between and within plant species. The review focuses initially on adaptations allowing plants to tolerate large Se concentrations in their tissues and the evolutionary origin of species that hyperaccumulate Se. It then describes the variation in tissue Se concentrations between and within angiosperm species and identifies genes encoding enzymes limiting the rates of incorporation of Se into organic compounds and chromosomal loci that might enable the development of crops with greater Se concentrations in their edible portions. Finally, it discusses transgenic approaches enabling plants to tolerate greater Se concentrations in the rhizosphere and in their tissues. Conclusions The trait of Se hyperaccumulation has evolved several times in separate angiosperm clades. The ability to tolerate large tissue Se concentrations is primarily related to the ability to divert Se away from the accumulation of selenocysteine and selenomethionine, which might be incorporated

  1. Selenium accumulation by plants.

    PubMed

    White, Philip J

    2016-02-01

    Selenium (Se) is an essential mineral element for animals and humans, which they acquire largely from plants. The Se concentration in edible plants is determined by the Se phytoavailability in soils. Selenium is not an essential element for plants, but excessive Se can be toxic. Thus, soil Se phytoavailability determines the ecology of plants. Most plants cannot grow on seleniferous soils. Most plants that grow on seleniferous soils accumulate <100 mg Se kg(-1) dry matter and cannot tolerate greater tissue Se concentrations. However, some plant species have evolved tolerance to Se, and commonly accumulate tissue Se concentrations >100 mg Se kg(-1) dry matter. These plants are considered to be Se accumulators. Some species can even accumulate Se concentrations of 1000-15 000 mg Se kg(-1 )dry matter and are called Se hyperaccumulators. This article provides an overview of Se uptake, translocation and metabolism in plants and highlights the possible genetic basis of differences in these between and within plant species. The review focuses initially on adaptations allowing plants to tolerate large Se concentrations in their tissues and the evolutionary origin of species that hyperaccumulate Se. It then describes the variation in tissue Se concentrations between and within angiosperm species and identifies genes encoding enzymes limiting the rates of incorporation of Se into organic compounds and chromosomal loci that might enable the development of crops with greater Se concentrations in their edible portions. Finally, it discusses transgenic approaches enabling plants to tolerate greater Se concentrations in the rhizosphere and in their tissues. The trait of Se hyperaccumulation has evolved several times in separate angiosperm clades. The ability to tolerate large tissue Se concentrations is primarily related to the ability to divert Se away from the accumulation of selenocysteine and selenomethionine, which might be incorporated into non-functional proteins

  2. Effects of chloride, sulfate and natural organic matter (NOM) on the accumulation and release of trace-level inorganic contaminants from corroding iron.

    PubMed

    Peng, Ching-Yu; Ferguson, John F; Korshin, Gregory V

    2013-09-15

    This study examined effects of varying levels of anions (chloride and sulfate) and natural organic matter (NOM) on iron release from and accumulation of inorganic contaminants in corrosion scales formed on iron coupons exposed to drinking water. Changes of concentrations of sulfate and chloride were observed to affect iron release and, in lesser extent, the retention of representative inorganic contaminants (vanadium, chromium, nickel, copper, zinc, arsenic, cadmium, lead and uranium); but, effects of NOM were more pronounced. DOC concentration of 1 mg/L caused iron release to increase, with average soluble and total iron concentrations being four and two times, respectively, higher than those in the absence of NOM. In the presence of NOM, the retention of inorganic contaminants by corrosion scales was reduced. This was especially prominent for lead, vanadium, chromium and copper whose retention by the scales decreased from >80% in the absence of NOM to <30% in its presence. Some of the contaminants, notably copper, chromium, zinc and nickel retained on the surface of iron coupons in the presence of DOC largely retained their mobility and were released readily when ambient water chemistry changed. Vanadium, arsenic, cadmium, lead and uranium retained by the scales were largely unsusceptible to changes of NOM and chloride levels. Modeling indicated that the observed effects were associated with the formation of metal-NOM complexes and effects of NOM on the sorption of the inorganic contaminants on solid phases that are typical for iron corrosion in drinking water. Copyright © 2013 Elsevier Ltd. All rights reserved.

  3. Effects of ozonation pretreatment on natural organic matter and wastewater derived organic matter - Possible implications on the formation of ozonation by-products.

    PubMed

    Papageorgiou, Alexandros; Stylianou, Stylianos K; Kaffes, Pavlos; Zouboulis, Anastasios I; Voutsa, Dimitra

    2017-03-01

    The aim of this study was to investigate possible implications of natural and wastewater derived organic matter in river water that is subsequently used following treatment for drinking purposes. River water was subjected to lab-scale ozonation experiments under different ozone doses (0.1, 0.4, 0.8, 1.0 and 2.0 mgO 3 /mgC) and contact times (1, 3, 5, 8 and 10 min). Mixtures of river water with humic acids or wastewaters (sewage wastewater and secondary effluents) at different proportions were also ozonated. Dissolved organic carbon and biodegradable dissolved organic carbon concentrations as well as spectroscopic characteristics (UV absorbance and fluorescence intensities) of different types of dissolved organic matter and possible changes due to the ozonation treatment are presented. River water, humic substances and wastewater exhibited distinct spectroscopic characteristics that could serve for pollution source tracing. Wastewater impacted surface water results in higher formation of carbonyl compounds. However, the formation yield (μg/mgC) of wastewaters was lower than that of surface water possibly due to different composition of wastewater derived organic matter and the presence of scavengers, which may limit the oxidative efficiency of ozone. Copyright © 2016 Elsevier Ltd. All rights reserved.

  4. Biodegradability of algal-derived organic matter in a large artificial lake by using stable isotope tracers.

    PubMed

    Lee, Yeonjung; Lee, Bomi; Hur, Jin; Min, Jun-Oh; Ha, Sun-Yong; Ra, Kongtae; Kim, Kyung-Tae; Shin, Kyung-Hoon

    2016-05-01

    In order to understand the biodegradability of algal-derived organic matter, biodegradation experiments were conducted with (13)C and (15)N-labeled natural phytoplankton and periphytic algal populations in experimental conditions for 60 days. Qualitative changes in the dissolved organic matter were also determined using parallel factor analysis and the stable carbon isotopic composition of the hydrophobic dissolved organic matter through the experimental period. Although algal-derived organic matter is considered to be easily biodegradable, the initial amounts of total organic carbon newly produced by phytoplankton and periphytic algae remained approximately 16 and 44 % after 60 days, respectively, and about 22 and 43 % of newly produced particulate nitrogen remained. Further, the dissolved organic carbon derived from both algal populations increased significantly after 60 days. Although the dissolved organic matter gradually became refractory, the contributions of the algal-derived organic matter to the dissolved organic matter and hydrophobic dissolved organic matter increased. Our laboratory experimental results suggest that algal-derived organic matter produced by phytoplankton and periphytic algae could contribute significantly to the non-biodegradable organic matter through microbial transformations.

  5. Relationship between the colored dissolved organic matter and dissolved organic carbon and the application on remote sensing in East China Sea

    NASA Astrophysics Data System (ADS)

    Qiong, Liu; Pan, Delu; Huang, Haiqing; Lu, Jianxin; Zhu, Qiankun

    2011-11-01

    A cruise was conducted in the East China Sea (ECS) in autumn 2010 to collect Dissolved Organic Carbon (DOC) and Colored Dissolved Organic Matter (CDOM) samples. The distribution of DOC mainly controlled by the hydrography since the relationship between DOC and salinity was significant in both East China Sea. The biological activity had a significant influence on the concentration of DOC with a close correlation between DOC and Chl a. The absorption coefficient of CDOM (a355) decreased with the salinity increasing in the shelf of East China Sea (R2=0.9045). CDOM and DOC were significantly correlated in ECS where DOC distribution was dominated largely by the Changjiang diluted water. Based on the relationship of CDOM and DOC, we estimated the DOC concentration of the surface in ECS from satellite-derived CDOM images. Some deviations induced by the biological effect and related marine DOC accumulations were discussed.

  6. Benthic foraminiferal and organic matter compounds as proxies of environmental quality in a tropical coastal lagoon: The Itaipu lagoon (Brazil).

    PubMed

    Raposo, Débora; Clemente, Iara; Figueiredo, Marcos; Vilar, Amanda; Lorini, Maria Lucia; Frontalini, Fabrizio; Martins, Virgínia; Belart, Pierre; Fontana, Luiz; Habib, Renan; Laut, Lazaro

    2018-04-01

    Lagoons in the southeast coast of Brazil have experienced eutrophication due to the exponential increase of human population and sewage discharges. Living benthic foraminifera have demonstrated to be good bioindicators of such impacts. This study aims to evaluate the organic matter accumulation effects on the foraminiferal distribution in the Itaipu lagoon (Brazil). On the basis of the biotic and abiotic analyses, three sectors are identified. The Sector I, an inner area, is characterized by high dissolved oxygen values and foraminiferal species with preference for marine conditions, demonstrating the sea influence. The Sector II, in the mangrove margins, is associated to sandy sediment and biopolymers and mainly represented by euryhaline species. The Sector III is marked by low density or absence of living foraminifera and corresponds to a low quality organic matter enriched area (North, Southwest and Centre). Copyright © 2018 Elsevier Ltd. All rights reserved.

  7. Organic matter degradation in surface sediments of the Changjiang estuary: Evidence from amino acids.

    PubMed

    Wang, Kui; Chen, Jianfang; Jin, Haiyan; Li, Hongliang; Zhang, Weiyan

    2018-05-12

    Organic matter degradation is a key component of the processes of carbon preservation and burial in seafloor sediments. The aim of this study was to explore organic matter degradation state within the open-shelf Changjiang Estuary of the East China Sea, using an amino acids-based degradation index (DI) in conjunction with information about organic matter source (marine versus terrestrial), bottom water oxygenation state, and sediment grain size. The relative molar percentages of 17 individual amino acids (characterized using principal component analysis) in surface sediments indicate that organic matter is degraded to varying extents across the estuary seabed. Sediments with DI >0 (relatively labile) were found mostly within a coastal hypoxic area. Sediments of DI less than -1 (relatively refractory) were found near the Changjiang River mouth and the northern and southern parts of the central shelf. We consider DI to be a more reliable indicator of degradation than simple ratios of AAs. DI was inversely correlated with the proportion of terrestrial organic material (F t ) in the sediments, indicating that relatively fresh/labile organic matter was generally associated with marine sources. DI was significantly correlated with F t and bottom water apparent oxygen utilization (AOU bot ) together. The parameter DI and the (labile) amino acid tyrosine were highest in hypoxic areas, suggesting the presence of relatively fresh organic matter, probably due to a combination of marine-source inputs and better preservation of organic matter in the silt and clay sediments of these areas (as compared to sandy sediments). Less degraded organic matter with high amino acids was also favorable to benthic animals. Overall, sedimentary estuarine organic matter was least degraded in areas characterized by marine sources of organic matter, low-oxygen conditions, and fine-grained sediments. Copyright © 2018 Elsevier B.V. All rights reserved.

  8. High-mobility group box 1 from reactive astrocytes enhances the accumulation of endothelial progenitor cells in damaged white matter.

    PubMed

    Hayakawa, Kazuhide; Miyamoto, Nobukazu; Seo, Ji Hae; Pham, Loc-Duyen D; Kim, Kyu-Won; Lo, Eng H; Arai, Ken

    2013-04-01

    High-mobility group box 1 (HMGB1) was initially described as a damage-associated-molecular-pattern (DAMP) mediator that worsens acute brain injury after stroke. But, recent findings suggest that HMGB1 can play a surprisingly beneficial role during stroke recovery by promoting endothelial progenitor cell (EPC) function and vascular remodeling in cortical gray matter. Here, we ask whether HMGB1 may also influence EPC responses in white matter injury. The standard lysophosphatidylcholine (LPC) injection model was used to induce focal demyelination in the corpus callosum of mice. Immunostaining showed that within the focal white matter lesions, HMGB1 was up-regulated in GFAP-positive reactive astrocytes, along with the accumulation of Flk1/CD34-double-positive EPCs that expressed pro-recovery mediators such as brain-derived neurotrophic factor and basic fibroblast growth factor. Astrocyte-EPC signaling required the HMGB1 receptor RAGE as treatment with RAGE-neutralizing antibody significantly decreased EPC accumulation. Moreover, suppression of HMGB1 with siRNA in vivo significantly decreased EPC numbers in damaged white matter as well as proliferated endothelial cell numbers. Finally, in vitro cell culture systems confirmed that HMGB1 directly affected EPC function such as migration and tube formation. Taken together, our findings suggest that HMGB1 from reactive astrocytes may attract EPCs to promote recovery after white matter injury. © 2012 International Society for Neurochemistry.

  9. Interstellar and Solar System Organic Matter Preserved in Interplanetary Dust

    NASA Technical Reports Server (NTRS)

    Messenger, Scott; Nakamura-Messenger, Keiko

    2015-01-01

    Interplanetary dust particles (IDPs) collected in the Earth's stratosphere derive from collisions among asteroids and by the disruption and outgassing of short-period comets. Chondritic porous (CP) IDPs are among the most primitive Solar System materials. CP-IDPs have been linked to cometary parent bodies by their mineralogy, textures, C-content, and dynamical histories. CP-IDPs are fragile, fine-grained (less than um) assemblages of anhydrous amorphous and crystalline silicates, oxides and sulfides bound together by abundant carbonaceous material. Ancient silicate, oxide, and SiC stardust grains exhibiting highly anomalous isotopic compositions are abundant in CP-IDPs, constituting 0.01 - 1 % of the mass of the particles. The organic matter in CP-IDPs is isotopically anomalous, with enrichments in D/H reaching 50x the terrestrial SMOW value and 15N/14N ratios up to 3x terrestrial standard compositions. These anomalies are indicative of low T (10-100 K) mass fractionation in cold molecular cloud or the outermost reaches of the protosolar disk. The organic matter shows distinct morphologies, including sub-um globules, bubbly textures, featureless, and with mineral inclusions. Infrared spectroscopy and mass spectrometry studies of organic matter in IDPs reveals diverse species including aliphatic and aromatic compounds. The organic matter with the highest isotopic anomalies appears to be richer in aliphatic compounds. These materials also bear similarities and differences with primitive, isotopically anomalous organic matter in carbonaceous chondrite meteorites. The diversity of the organic chemistry, morphology, and isotopic properties in IDPs and meteorites reflects variable preservation of interstellar/primordial components and Solar System processing. One unifying feature is the presence of sub-um isotopically anomalous organic globules among all primitive materials, including IDPs, meteorites, and comet Wild-2 samples returned by the Stardust mission.

  10. Caracterisation of anthropogenic contribution to the coastal fluorescent organic matter

    NASA Astrophysics Data System (ADS)

    El Nahhal, Ibrahim; Nouhi, Ayoub; Mounier, Stéphane

    2015-04-01

    It is known that most of the coastal fluorescent organic matter is of a terrestrial origin (Parlanti, 2000; Tedetti, Guigue, & Goutx, 2010). However, the contribution of the anthropogenic organic matter to this pool is not well defined and evaluated. In this work the monitoring of little bay (Toulon Bay, France) was done in the way to determine the organic fluorescent response during a winter period. The sampling campaign consisted of different days during the month of December, 2014 ( 12th, 15th, 17th, 19th) on 21 different sampling sites for the fluorescence measurements (without any filtering of the samples) and the whole month of December for the bacterial and the turbidity measurements. Excitation Emission Matrices (EEMs) of fluorescence (from 200 to 400 nm and 220 to 420 nm excitation and emission range) were treated by parallel factor analysis (PARAFAC).The parafac analysis of the EEM datasets was conducted using PROGMEEF software in Matlab langage. On the same time that the turbidity and bacterial measurement (particularly the E.Coli concentration) were determined. The results gives in a short time range, information on the the contribution of the anthropogenic inputs to the coastal fluorescent organic matter. In addition, the effect of salinity on the photochemical degradation of the anthropogenic organic matter (especially those from wastewater treatment plants) will be studied to investigate their fate in the water end member by the way of laboratory experiments. Parlanti, E. (2000). Dissolved organic matter fluorescence spectroscopy as a tool to estimate biological activity in a coastal zone submitted to anthropogenic inputs. Organic Geochemistry, 31(12), 1765-1781. doi:10.1016/S0146-6380(00)00124-8 Tedetti, M., Guigue, C., & Goutx, M. (2010). Utilization of a submersible UV fluorometer for monitoring anthropogenic inputs in the Mediterranean coastal waters. Marine Pollution Bulletin, 60(3), 350-62. doi:10.1016/j.marpolbul.2009.10.018

  11. Production of Dissolved Organic Matter During Doliolid Feeding

    NASA Astrophysics Data System (ADS)

    Castellane, N. J.; Paffenhofer, G. A.; Stubbins, A.

    2016-02-01

    The biological carbon pump (BCP) draws carbon dioxide out of the atmosphere and buries it at the seafloor. The efficiency of the BCP is determined in part by the sinking rates of particulate organic carbon (POC) from ocean surface waters. Zooplankton can package POC into fecal pellets with higher sinking rates than their food source (e.g. phytoplankton), increasing the efficiency of the BCP. However, dissolved organic carbon (DOC) is also produced as zooplankton ingest and egest food, reducing the efficiency of BCP. The pelagic tunicate Dolioletta gegenbauri (doliolid) is a gelatinous zooplankton found at high concentrations in shelf waters, including our study site: the South Atlantic Bight. Doliolids are efficient grazers capable of stripping large quantities of phytoplankton from the water column. To determine the balance between pellet formation and DOC production during feeding, doliolids (6-7 mm gonozooids) were placed in natural seawater amended with a live phytoplankton food source and incubated on a plankton wheel. Dissolved organic matter (DOM) released directly to the water as well as the water soluble fraction of pellet organic matter were quantified and optically characterized. Colored dissolved organic matter (CDOM) absorbance and fluorescence spectra revealed that doliolid feeding produces DOM with optical properties that are commonly indicative of newly produced, highly biolabile DOM of microbial origin. Based upon these optical characteristics, doliolid-produced DOM is expected to be highly bio-labile in the environment and therefore rapidly degraded by surface ocean microbes shunting phytoplankton-derived organic carbon out of the BCP and back to dissolved inorganic carbon.

  12. Temperature response of litter and soil organic matter decomposition is determined by chemical composition of organic material.

    PubMed

    Erhagen, Björn; Öquist, Mats; Sparrman, Tobias; Haei, Mahsa; Ilstedt, Ulrik; Hedenström, Mattias; Schleucher, Jürgen; Nilsson, Mats B

    2013-12-01

    The global soil carbon pool is approximately three times larger than the contemporary atmospheric pool, therefore even minor changes to its integrity may have major implications for atmospheric CO2 concentrations. While theory predicts that the chemical composition of organic matter should constitute a master control on the temperature response of its decomposition, this relationship has not yet been fully demonstrated. We used laboratory incubations of forest soil organic matter (SOM) and fresh litter material together with NMR spectroscopy to make this connection between organic chemical composition and temperature sensitivity of decomposition. Temperature response of decomposition in both fresh litter and SOM was directly related to the chemical composition of the constituent organic matter, explaining 90% and 70% of the variance in Q10 in litter and SOM, respectively. The Q10 of litter decreased with increasing proportions of aromatic and O-aromatic compounds, and increased with increased contents of alkyl- and O-alkyl carbons. In contrast, in SOM, decomposition was affected only by carbonyl compounds. To reveal why a certain group of organic chemical compounds affected the temperature sensitivity of organic matter decomposition in litter and SOM, a more detailed characterization of the (13) C aromatic region using Heteronuclear Single Quantum Coherence (HSQC) was conducted. The results revealed considerable differences in the aromatic region between litter and SOM. This suggests that the correlation between chemical composition of organic matter and the temperature response of decomposition differed between litter and SOM. The temperature response of soil decomposition processes can thus be described by the chemical composition of its constituent organic matter, this paves the way for improved ecosystem modeling of biosphere feedbacks under a changing climate. © 2013 John Wiley & Sons Ltd.

  13. Effects of agricultural practices on organic matter degradation in ditches

    NASA Astrophysics Data System (ADS)

    Hunting, Ellard R.; Vonk, J. Arie; Musters, C. J. M.; Kraak, Michiel H. S.; Vijver, Martina G.

    2016-02-01

    Agricultural practices can result in differences in organic matter (OM) and agricultural chemical inputs in adjacent ditches, but its indirect effects on OM composition and its inherent consequences for ecosystem functioning remain uncertain. This study determined the effect of agricultural practices (dairy farm grasslands and hyacinth bulb fields) on OM degradation by microorganisms and invertebrates with a consumption and food preference experiment in the field and in the laboratory using natural OM collected from the field. Freshly cut grass and hyacinths were also offered to control for OM composition and large- and small mesh-sizes were used to distinguish microbial decomposition and invertebrate consumption. Results show that OM decomposition by microorganisms and consumption by invertebrates was similar throughout the study area, but that OM collected from ditches adjacent grasslands and freshly cut grass and hyacinths were preferred over OM collected from ditches adjacent to a hyacinth bulb field. In the case of OM collected from ditches adjacent hyacinth bulb fields, both microbial decomposition and invertebrate consumption were strongly retarded, likely resulting from sorption and accumulation of pesticides. This outcome illustrates that differences in agricultural practices can, in addition to direct detrimental effects on aquatic organisms, indirectly alter the functioning of adjacent aquatic ecosystems.

  14. Mapping Soil Organic Matter with Hyperspectral Imaging

    NASA Astrophysics Data System (ADS)

    Moni, Christophe; Burud, Ingunn; Flø, Andreas; Rasse, Daniel

    2014-05-01

    Soil organic matter (SOM) plays a central role for both food security and the global environment. Soil organic matter is the 'glue' that binds soil particles together, leading to positive effects on soil water and nutrient availability for plant growth and helping to counteract the effects of erosion, runoff, compaction and crusting. Hyperspectral measurements of samples of soil profiles have been conducted with the aim of mapping soil organic matter on a macroscopic scale (millimeters and centimeters). Two soil profiles have been selected from the same experimental site, one from a plot amended with biochar and another one from a control plot, with the specific objective to quantify and map the distribution of biochar in the amended profile. The soil profiles were of size (30 x 10 x 10) cm3 and were scanned with two pushbroomtype hyperspectral cameras, one which is sensitive in the visible wavelength region (400 - 1000 nm) and one in the near infrared region (1000 - 2500 nm). The images from the two detectors were merged together into one full dataset covering the whole wavelength region. Layers of 15 mm were removed from the 10 cm high sample such that a total of 7 hyperspectral images were obtained from the samples. Each layer was analyzed with multivariate statistical techniques in order to map the different components in the soil profile. Moreover, a 3-dimensional visalization of the components through the depth of the sample was also obtained by combining the hyperspectral images from all the layers. Mid-infrared spectroscopy of selected samples of the measured soil profiles was conducted in order to correlate the chemical constituents with the hyperspectral results. The results show that hyperspectral imaging is a fast, non-destructive technique, well suited to characterize soil profiles on a macroscopic scale and hence to map elements and different organic matter quality present in a complete pedon. As such, we were able to map and quantify biochar in our

  15. Major structural components in freshwater dissolved organic matter.

    PubMed

    Lam, Buuan; Baer, Andrew; Alaee, Mehran; Lefebvre, Brent; Moser, Arvin; Williams, Antony; Simpson, André J

    2007-12-15

    Dissolved organic matter (DOM) contains a complex array of chemical components that are intimately linked to many environmental processes, including the global carbon cycle, and the fate and transport of chemical pollutants. Despite its importance, fundamental aspects, such as the structural components in DOM remain elusive, due in part to the molecular complexity of the material. Here, we utilize multidimensional nuclear magnetic resonance spectroscopy to demonstrate the major structural components in Lake Ontario DOM. These include carboxyl-rich alicyclic molecules (CRAM), heteropolysaccharides, and aromatic compounds, which are consistent with components recently identified in marine dissolved organic matter. In addition, long-range proton-carbon correlations are obtained for DOM, which support the existence of material derived from linear terpenoids (MDLT). It is tentatively suggested that the bulk of freshwater dissolved organic matter is aliphatic in nature, with CRAM derived from cyclic terpenoids, and MDLT derived from linear terpenoids. This is in agreement with previous reports which indicate terpenoids as major precursors of DOM. At this time it is not clear in Lake Ontario whether these precursors are of terrestrial or aquatic origin or whether transformations proceed via biological and/ or photochemical processes.

  16. [Effects of field border length for irrigation on photosynthetic characteristics, dry matter accumulation and water use efficiency of wheat].

    PubMed

    Ma, Shang-Yu; Yu, Zhen-Wen; Shi, Yu; Zhao, Jun-Ye; Zhang, Yong-Li

    2014-04-01

    With the high-yielding winter wheat cultivar Jimai 22 as test material, a three-year field experiment was conducted to examine the effects of border length for irrigation on flag leaf water potential, photosynthetic characteristics, dry matter accumulation and distribution of wheat. In the 2010-2011 growing season, six treatments were installed, i. e., the field border length was designed as 10 m (L10), 20 m (L20), 40 m (L40), 60 m (L60), 80 m (L80) and 100 m (L100). In the 2011-2012 and 2012-2013 growing seasons, the field border length was designed as 40 m (L40), 60 m (L60), 80 m (L80) and 100 m (L100). The results showed that the average relative soil water content of the 0-200 cm soil layer was presented as L80, L60>L100>L40>L20>L10 at anthesis in the 2010-2011 growing season and as L80, L60>L100>L40 in the 2011-2012 and 2012-2013 growing seasons. At 11 d and 21 d after anthesis, the water potential, net photosynthetic rate and transpiration rate of flag leaf were presented as L80, L100>L60>L40>L20, L10, and as L80>L60, L100>L40, L20, L10 at 31 d after anthesis. The coefficients of variability both of the dry matter accumulation at anthesis and maturity and of grain yield in different regions of L80 field were lower than those of L100. The average dry matter accumulation, dry matter accumulation after anthesis and the contribution to grain of L80 were dramatically higher than those of L100, L40, L20 and L10. L80 had the highest average grain yield and water use efficiency, being the best treatment for irrigation in our study.

  17. A stoichiometric organic matter decomposition model in a chemostat culture.

    PubMed

    Kong, Jude D; Salceanu, Paul; Wang, Hao

    2018-02-01

    Biodegradation, the disintegration of organic matter by microorganism, is essential for the cycling of environmental organic matter. Understanding and predicting the dynamics of this biodegradation have increasingly gained attention from the industries and government regulators. Since changes in environmental organic matter are strenuous to measure, mathematical models are essential in understanding and predicting the dynamics of organic matters. Empirical evidence suggests that grazers' preying activity on microorganism helps to facilitate biodegradation. In this paper, we formulate and investigate a stoichiometry-based organic matter decomposition model in a chemostat culture that incorporates the dynamics of grazers. We determine the criteria for the uniform persistence and extinction of the species and chemicals. Our results show that (1) if at the unique internal steady state, the per capita growth rate of bacteria is greater than the sum of the bacteria's death and dilution rates, then the bacteria will persist uniformly; (2) if in addition to this, (a) the grazers' per capita growth rate is greater than the sum of the dilution rate and grazers' death rate, and (b) the death rate of bacteria is less than some threshold, then the grazers will persist uniformly. These conditions can be achieved simultaneously if there are sufficient resources in the feed bottle. As opposed to the microcosm decomposition models' results, in a chemostat culture, chemicals always persist. Besides the transcritical bifurcation observed in microcosm models, our chemostat model exhibits Hopf bifurcation and Rosenzweig's paradox of enrichment phenomenon. Our sensitivity analysis suggests that the most effective way to facilitate degradation is to decrease the dilution rate.

  18. Elucidating Microbial Species-Specific Effects on Organic Matter Transformation in Marine Sediments

    NASA Astrophysics Data System (ADS)

    Mahmoudi, N.; Enke, T. N.; Beaupre, S. R.; Teske, A.; Cordero, O. X.; Pearson, A.

    2017-12-01

    Microbial transformation and decomposition of organic matter in sediments constitutes one of the largest fluxes of carbon in marine environments. Mineralization of sedimentary organic matter by microorganisms results in selective degradation such that bioavailable or accessible compounds are rapidly metabolized while more recalcitrant, complex compounds are preserved and buried in sediment. Recent studies have found that the ability to use different carbon sources appears to vary among microorganisms, suggesting that the availability of certain pools of carbon can be specific to the taxa that utilize the pool. This implies that organic matter mineralization in marine environments may depend on the metabolic potential of the microbial populations that are present and active. The goal of our study was to investigate the extent to which organic matter availability and transformation may be species-specific using sediment from Guaymas Basin (Gulf of California). We carried out time-series incubations using bacterial isolates and sterilized sediment in the IsoCaRB system which allowed us to measure the production rates and natural isotopic signatures (δ13C and Δ14C) of microbially-respired CO2. Separate incubations using two different marine bacterial isolates (Vibrio sp. and Pseudoalteromonas sp.) and sterilized Guaymas Basin sediment under oxic conditions showed that the rate and total quantity of organic matter metabolized by these two species differs. Approximately twice as much CO2 was collected during the Vibrio sp. incubation compared to the Pseudoalteromonas sp. incubation. Moreover, the rate at which organic matter was metabolized by the Vibrio sp. was much higher than the Pseudoalteromonas sp. indicating the intrinsic availability of organic matter in sediments may depend on the species that is present and active. Isotopic analyses of microbially respired CO2 will be used to constrain the type and age of organic matter that is accessible to each species

  19. New Approaches in Soil Organic Matter Fluorescence; A Solid Phase Fluorescence Approach

    NASA Astrophysics Data System (ADS)

    Bowman, M. M.; Sanclements, M.; McKnight, D. M.

    2017-12-01

    Fluorescence spectroscopy is a well-established technique to investigate the composition of organic matter in aquatic systems and is increasingly applied to soil organic matter (SOM). Current methods require that SOM be extracted into a liquid prior to analysis by fluorescence spectroscopy. Soil extractions introduce an additional layer of complexity as the composition of the organic matter dissolved into solution varies based upon the selected extractant. Water is one of the most commonly used extractant, but only extracts the water-soluble fraction of the SOM with the insoluble soil organic matter fluorescence remaining in the soil matrix. We propose the use of solid phase fluorescence on whole soils as a potential tool to look at the composition of organic matter without the extraction bias and gain a more complete understand of the potential for fluorescence as a tool in terrestrial studies. To date, the limited applications of solid phase fluorescence have ranged from food and agriculture to pharmaceutical with no clearly defined methods and limitations available. We are aware of no other studies that use solid phase fluorescence and thus no clear methods to look at SOM across a diverse set of soil types and ecosystems. With this new approach to fluorescence spectroscopy there are new challenges, such as blank correction, inner filter effect corrections, and sample preparation. This work outlines a novel method for analyzing soil organic matter using solid phase fluorescence across a wide range of soils collected from the National Ecological Observatory Network (NEON) eco-domains. This method has shown that organic matter content in soils must be diluted to 2% to reduce backscattering and oversaturation of the detector in forested soils. In mineral horizons (A) there is observed quenching of the humic-like organic matter, which is likely a result of organo-mineral complexation. Finally, we present preliminary comparisons between solid and liquid phase

  20. Distinguishing the influence of soil organic matter quality from that of environmental constraints in controlling soil heterotrophic respiration along a continental network of sites

    NASA Astrophysics Data System (ADS)

    Pare, D.; Bernier, P. Y.; Trofymow, J. A.; Moore, T. R.

    2011-12-01

    The forest soils of Canada contain large amounts of carbon and its dynamics is one of the key areas of uncertainty in the carbon balance of North America. While estimates of total soil carbon stocks are available, the relative role of soil organic matter (SOM) quality from that of environmental conditions in maintaining these C reservoirs is poorly known. Soil organic matter (SOM) quality was evaluated with the use of both acid hydrolysis and lab incubation at several temperatures for 15 sites part of the Fluxnet Canada network that represent the major ecological forest groups in Canada and included as well two peatland sites. The mineralizable fraction of soil total C (TOC) varied fivefold across sites and soil layers (4 to 25%). To the opposite acid hydrolysable C was a constant fraction of total organic C (TOC) representing 23 and 37% of TOC in the forest floor and top mineral soil (0-20cm) respectively. Total soil carbon pools were highly correlated with pools of recalcitrant C but weakly to labile pools, especially in the mineral soils. These results indicated that soils accumulating a thick organic layer, such as black spruce and peatland soils, are also accumulating potentially labile C that could be mineralised given favourable environmental conditions. However, this relationship is barely significant for the mineral soils where greater C accumulation indicated in essence more accumulation into recalcitrant pools. Mineralized C was correlated with cellulose concentration in the forest floor (R=0.68) and not with acid-hydrolizable C in either soil horizons suggesting that this fraction in non-relevant to C dynamics. Estimates soil heterotrophic respiration (Rh-lab) using incubation derived equation and field soil hourly temperatures were compared with the size of the soil potentially mineralizable C pool (labile C). The difference between these two figures was large for soil having a large portion of their C reserves in the organic layer but was small for

  1. Elemental composition and functional groups in soil labile organic matter fractions

    USDA-ARS?s Scientific Manuscript database

    Labile organic matter fractions are major components involved in nutrient cycle in soil. In this chapter, we examine three labile organic matter fraction: light fraction (LF), humic acid (HA) and fulvic acid (HA) in Alabama cotton soils (ultisol) amended with chemical fertilizer (NH4NO3) and poult...

  2. Organic matter preserved in 3-billion-year-old mudstones at Gale crater, Mars

    NASA Astrophysics Data System (ADS)

    Eigenbrode, Jennifer L.; Summons, Roger E.; Steele, Andrew; Freissinet, Caroline; Millan, Maëva; Navarro-González, Rafael; Sutter, Brad; McAdam, Amy C.; Franz, Heather B.; Glavin, Daniel P.; Archer, Paul D.; Mahaffy, Paul R.; Conrad, Pamela G.; Hurowitz, Joel A.; Grotzinger, John P.; Gupta, Sanjeev; Ming, Doug W.; Sumner, Dawn Y.; Szopa, Cyril; Malespin, Charles; Buch, Arnaud; Coll, Patrice

    2018-06-01

    Establishing the presence and state of organic matter, including its possible biosignatures, in martian materials has been an elusive quest, despite limited reports of the existence of organic matter on Mars. We report the in situ detection of organic matter preserved in lacustrine mudstones at the base of the ~3.5-billion-year-old Murray formation at Pahrump Hills, Gale crater, by the Sample Analysis at Mars instrument suite onboard the Curiosity rover. Diverse pyrolysis products, including thiophenic, aromatic, and aliphatic compounds released at high temperatures (500° to 820°C), were directly detected by evolved gas analysis. Thiophenes were also observed by gas chromatography–mass spectrometry. Their presence suggests that sulfurization aided organic matter preservation. At least 50 nanomoles of organic carbon persists, probably as macromolecules containing 5% carbon as organic sulfur molecules.

  3. Impacts of heterogeneous organic matter on phenanthrene sorption--Equilibrium and kinetic studies with aquifer material

    USGS Publications Warehouse

    Karapanagioti, Hrissi K.; Kleineidam, Sybille; Sabatini, David A.; Grathwohl, Peter; Ligouis, Bertrand

    2000-01-01

    Sediment organic matter heterogeneity in sediments is shown to impact the sorption behavior of contaminants. We investigated the sorptive properties as well as the composition of organic matter in different subsamples (mainly grain size fractions) of the Canadian River Alluvium (CRA). Organic petrography was used as a new tool to describe and characterize the organic matter in the subsamples. The samples studied contained many different types of organic matter including bituminous coal particles. Differences in sorption behavior were explained based on these various types of organic matter. Subsamples containing predominately coaly, particulate organic matter showed the highest Koc, the highest nonlinearity of sorption isotherms and the slowest sorption kinetics. Soil subsamples with organic matter present as organic coatings around the quartz grains evidenced the lowest Koc, the most linear sorption isotherms and the fastest sorption kinetics, which was not limited by slow intraparticle diffusion. Due to the high sorption capacity of the coaly particles even when it is present as only a small fraction of the composite organic content (<3%) causes Koc values which are much higher than expected for soil organic matter (e.g. Koc − Kow relationships). The results show that the identification and quantification of the coaly particles within a sediment or soil sample is a prerequisite in order to understand or predict sorption behavior of organic pollutants.

  4. Does a strong pycnocline impact organic-matter preservation and accumulation in an anoxic setting? The case of the Orca Basin, Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Tribovillard, Nicolas; Bout-Roumazeilles, Viviane; Sionneau, Thomas; Serrano, Jean Carlos Montero; Riboulleau, Armelle; Baudin, François

    2009-01-01

    The Orca Basin (an intraslope depression located in the Gulf of Mexico) collects sedimentary particles of terrestrial origin (clastic and organic particles mainly supplied by the Mississippi River) and of marine origin (biogenic productivity). The basin is partly filled with dense brines leached from salt diapirs cropping out on the sea floor, and is permanently stratified. A strong pycnocline induces anoxic bottom conditions, expectedly favorable to organic matter (OM) preservation. Here, we report on OM in the upper 750 cm below sea floor of Core MD02-2552 (Holocene). The organic content is dominated by marine-derived amorphous OM. The organic assemblage is unexpectedly degraded to some extent, which may be accounted for by a relatively long residence time of organic particles at the halocline-pycnocline at ˜2240 m. Thus the organic particles are temporarily trapped and kept in contact with the dissolved oxygen-rich overlying water mass. Lastly, the land-derived organic fraction shows co-variations with the land-derived clay mineral supply.

  5. Energy Transformations of Soil Organic Matter in a Changing World

    NASA Astrophysics Data System (ADS)

    Herrmann, A. M.; Coucheney, E.; Grice, S. M.; Ritz, K.; Harris, J.

    2011-12-01

    The role of soils in governing the terrestrial carbon balance is acknowledged as being important but remains poorly understood within the context of climate change. Soils exchange energy with their surroundings and are therefore open systems thermodynamically, but little is known how energy transformations of decomposition processes are affected by temperature. Soil organic matter and the soil biomass can be conceptualised as analogous to the 'fuel' and 'biological engine' of the earth, respectively, and are pivotal in driving the belowground carbon cycle. Thermodynamic principles of soil organic matter decomposition were evaluated by means of isothermal microcalorimetry (TAM Air, TA Instruments, Sollentuna Sweden: (i) Mineral forest soils from the Flakaliden long-term nitrogen fertilisation experiment (Sweden) were amended with a range of different substrates representing structurally simple to complex, ecologically pertinent organic matter and heat signatures were determined at temperatures between 5 and 25°C. (ii) Thermodynamic and resource-use efficiencies of the biomass were determined in arable soils which received contrasting long-term management regimes with respect to organic matter and nitrogen since 1956. The work showed that (i) structurally labile components have higher activation energy and temperature dependence than structurally more complex organic components. This is, however, in contrast to the thermodynamic argument which suggests the opposite that reactions metabolising structurally complex, aromatic components have higher temperature dependence than reactions metabolising structurally more labile components. (ii) Microbial communities exposed to long-term stress by heavy metal and low pH were less thermodynamic efficient and showed a decrease in resource-use efficiency in comparison with conventional input regimes. Differences in efficiencies were mirrored in both the phenotypic and functional profiles of the communities. We will present our

  6. Marine methane paradox explained by bacterial degradation of dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Repeta, Daniel J.; Ferrón, Sara; Sosa, Oscar A.; Johnson, Carl G.; Repeta, Lucas D.; Acker, Marianne; Delong, Edward F.; Karl, David M.

    2016-12-01

    Biogenic methane is widely thought to be a product of archaeal methanogenesis, an anaerobic process that is inhibited or outcompeted by the presence of oxygen and sulfate. Yet a large fraction of marine methane delivered to the atmosphere is produced in high-sulfate, fully oxygenated surface waters that have methane concentrations above atmospheric equilibrium values, an unexplained phenomenon referred to as the marine methane paradox. Here we use nuclear magnetic resonance spectroscopy to show that polysaccharide esters of three phosphonic acids are important constituents of dissolved organic matter in seawater from the North Pacific. In seawater and pure culture incubations, bacterial degradation of these dissolved organic matter phosphonates in the presence of oxygen releases methane, ethylene and propylene gas. Moreover, we found that in mutants of a methane-producing marine bacterium, Pseudomonas stutzeri, disrupted in the C-P lyase phosphonate degradation pathway, methanogenesis was also disabled, indicating that the C-P lyase pathway can catalyse methane production from marine dissolved organic matter. Finally, the carbon stable isotope ratio of methane emitted during our incubations agrees well with anomalous isotopic characteristics of seawater methane. We estimate that daily cycling of only about 0.25% of the organic matter phosphonate inventory would support the entire atmospheric methane flux at our study site. We conclude that aerobic bacterial degradation of phosphonate esters in dissolved organic matter may explain the marine methane paradox.

  7. Effects of specific organs on seed oil accumulation in Brassica napus L.

    PubMed

    Liu, Jing; Hua, Wei; Yang, Hongli; Guo, Tingting; Sun, Xingchao; Wang, Xinfa; Liu, Guihua; Wang, Hanzhong

    2014-10-01

    Seed oil content is an important agricultural characteristic in rapeseed breeding. Genetic analysis shows that the mother plant and the embryo play critical roles in regulating seed oil accumulation. However, the overwhelming majority of previous studies have focused on oil synthesis in the developing seed of rapeseed. In this study, to elucidate the roles of reproductive organs on oil accumulation, silique, ovule, and embryo from three rapeseed lines with high oil content (zy036, 6F313, and 61616) were cultured in vitro. The results suggest that zy036 silique wall, 6F313 seed coat, and 61616 embryo have positive impacts on the seed oil accumulation. In zy036, our previous studies show that high photosynthetic activity of the silique wall contributes to seed oil accumulation (Hua et al., 2012). Herein, by transcriptome sequencing and sucrose detection, we found that sugar transport in 6F313 seed coat might regulate the efficiency of oil synthesis by controlling sugar concentration in ovules. In 61616 embryos, high oil accumulation efficiency was partly induced by the elevated expression of fatty-acid biosynthesis-related genes. Our investigations show three organ-specific mechanisms regulating oil synthesis in rapeseed. This study provides new insights into the factors affecting seed oil accumulation in rapeseed and other oil crops. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  8. Molecular Characterization of Cryoconite Organic Matter from the Athabasca Glacier, Canadian Rocky Mountains

    NASA Astrophysics Data System (ADS)

    Xu, Y.; Simpson, M. J.; Eyles, N.; Simpson, A.; Baer, A. J.

    2009-05-01

    Cryoconite is a dark-colored, dust-like material found on the surfaces of glaciers. Cryoconite holes, which are produced by accelerated ice melt due to more solar radiation absorption by cryoconite than bare ice, act as habitats for microbial life and biologically mediated chemical reactions on otherwise relatively inert glacier surfaces. Cryoconite holes may behave as bacterial shelters during "Snowball Earth" events postulated for the Neoproterozoic Earth. In this study organic matter (OM) biomarkers and a host of one- and two-dimensional NMR techniques were used to characterize cryoconite organic matter (COM) collected from the Athabasca Glacier in the Canadian Rocky Mountains. Solvent extracts contain large quantities of fatty acids, n-alkanols, n- alkanes, wax esters and sterols. A large contribution of C23 and C25 relative to C29 and C31 n-alkanes ([C23/(C23+C29)] = 0.51) suggests that allochthonous COM is derived mainly from lower order plants such as mosses and lichens. This is confirmed by the absence of lignin-derived phenols, a biomarker of terrestrial vascular plants, after copper (II) oxidation in extracts and NMR analyses of COM. Solution-state 1H NMR reveals prominent peptide/protein structures which are characteristic of microbial inputs, while solid-state 13C CP/MAS NMR analysis shows a very high alkyl/O-alkyl ratio (2.16), suggesting that COM is unique compared to organic matter found in nearby soils which have alkyl/O-alkyl ratio of ~0.39. Our NMR results suggest that COM is dominated by microbial-derived compounds, which is also confirmed by phospholipid fatty acid results (6,950µg/gOC) which show significant microbial contributions to COM primarily from bacteria and minor microeukaryotes. Both biomarker and NMR data suggest that COM likely supports active microbial communities on the Athabasca Glacier. Given that such material is incorporated within the glacier in the accumulation zone or flushed by meltwaters into subglacial environments

  9. Test procedure for determining organic matter content in soils : UV-VIS method.

    DOT National Transportation Integrated Search

    2010-11-01

    The Texas Department of Transportation has been having problems with organic matter in soils that they : stabilize for use as subgrade layers in road construction. The organic matter reduces the effectiveness of : common soil additives (lime/cement) ...

  10. Tracing organic matter sources in a tropical lagoon of the Caribbean Sea

    NASA Astrophysics Data System (ADS)

    Alonso-Hernández, Carlos M.; Garcia-Moya, Alejandro; Tolosa, Imma; Diaz-Asencio, Misael; Corcho-Alvarado, Jose Antonio; Morera-Gomez, Yasser; Fanelli, Emanuela

    2017-09-01

    The natural protected lagoon of Guanaroca, located between Cienfuegos Bay and the Arimao River, Cuba, has been heavily impacted by human-induced environmental changes over the past century. Sources of organic matter in the Guanaroca lagoon and concentrations of radioisotopes (210Pb, 226Ra, 137Cs and 239,240Pu), as tracers of anthropogenic impacts, were investigated in a 78 cm sediment core. Variations in total organic carbon (TOC), total nitrogen (TN), stable isotopic composition (δ13C and δ15N) and ratio of total organic carbon to total nitrogen (C/N) were analysed. On such a basis, environmental changes in the lagoon were revealed. Down core variation patterns of the parameters representing sources of organic matter were predominantly related to the impacts of human activities. Up to the nineteenth century, the principal sources of organic matter to sediments (more than 80%) were a mixing of terrestrial vascular plants ( 48%) and freshwater phytoplankton ( 8%), with minimal contribution from the marine component ( 16%). In the period 1900-1980, due to the strong influence of human activities in the catchment area, the water exchange capacity of the lagoon declined substantially, as indicated by the relatively high proportion of organic matter originated from human activities (58%). Since 1980, as a result of management actions in the protected area, the lagoon has regained gradually its capability to exchange freshwater, showing sources of organic matter similar to the natural conditions recorded previous to 1900, although an indication of human impact (treated sewage contributed for 26% to the organic matter in sediments) was still observed and further management measures would be required.

  11. The origin of organic matter in the Martian meteorite ALH84001.

    PubMed

    Becker, L; Popp, B; Rust, T; Bada, J L

    1999-01-01

    Stable carbon isotope measurements of the organic matter associated with the carbonate globules and the bulk matrix material in the ALH84001 Martian meteorite indicate that two distinct sources are present in the sample. The delta 13C values for the organic matter associated with the carbonate globules averaged -26% and is attributed to terrestrial contamination. In contrast, the delta 13C values for the organic matter associated with the bulk matrix material yielded a value of -15%. The only common carbon sources on the Earth that yield similar delta 13C values, other then some diagenetically altered marine carbonates, are C4 plants. A delta 13C value of -15%, on the other hand, is consistent with a kerogen-like component, the most ubiquitous form of organic matter found in carbonaceous chondrites such as the Murchison meteorite. Examination of the carbonate globules and bulk matrix material using laser desorption mass spectrometry (LDMS) indicates the presence of a high molecular weight organic component which appears to be extraterrestrial in origin, possibly derived from the exogenous delivery of meteoritic or cometary debris to the surface of Mars.

  12. The origin of organic matter in the Martian meteorite ALH84001.

    PubMed

    Becker, L; Popp, B; Rust, T; Bada, J L

    1999-03-30

    Stable carbon isotope measurements of the organic matter associated with the carbonate globules and the bulk matrix material in the ALH84001 Martian meteorite indicate that two distinct sources are present in the sample. The delta 13C values for the organic matter associated with the carbonate globules averaged -26% and is attributed to terrestrial contamination. In contrast, the delta 13C values for the organic matter associated with the bulk matrix material yielded a value of -15%. The only common sources of carbon on the Earth that yield similar delta 13C values, other then some diagenetically altered marine carbonates, are C4 plants. A delta 13C value of -15%, on the other hand, is consistent with a kerogen-like component, the most ubiquitous form of organic matter found in carbonaceous chondrites such as the Murchison meteorite. Examination of the carbonate globules and bulk matrix material using laser desorption mass spectrometry (LDMS) indicates the presence of a high molecular weight organic component which appears to be extraterrestrial in origin, possibly derived from the exogenous delivery, of meteoritic or cometary debris to the surface of Mars.

  13. Organic matter and the geotechnical properties of submarine sediments

    NASA Astrophysics Data System (ADS)

    Keller, George H.

    1982-09-01

    Continental slope deposits off Peru and Oregon where coastal upwelling is a pronounced oceanographic process possess significant concentrations of organic carbon. Geotechnical properties are altered to varying degrees by the organic matter. Organic matter absorbs water and causes clay-size particles to aggregate forming an open fabric. This causes unusually high water contents and plasticity and exceptionally low wet bulk densities. Some of these deposits show notable increases in shear strength, sensitivity and degree of apparent overconsolidation. Owing to the unique geotechnical properties, sediment stability characteristics are considered to be poor in situations of excess pore pressures. Failure appears to take the form of a fluidized flow somewhat similar to the quick clays of Scandinavia.

  14. Spatio-temporal variations in the composition of organic matter in surface sediments of a mangrove receiving shrimp farm effluents (New Caledonia).

    PubMed

    Aschenbroich, Adélaïde; Marchand, Cyril; Molnar, Nathalie; Deborde, Jonathan; Hubas, Cédric; Rybarczyk, Hervé; Meziane, Tarik

    2015-04-15

    In order to investigate spatio-temporal variations in the composition and origin of the benthic organic matter (OM) at the sediment surface in mangrove receiving shrimp farm effluents, fatty acid (FA) biomarkers, natural stable isotopes (δ(13)C and δ(15)N), C:N ratios and chlorophyll-a (chl-a) concentrations were determined during the active and the non-active period of the farm. Fatty acid compositions in surface sediments within the mangrove forest indicated that organic matter inputs varied along the year as a result of farm activity. Effluents were the source of fresh particulate organic matter for the mangrove, as evidenced by the unsaturated fatty acid (UFA) distribution. The anthropogenic MUFA 18:1ω9 was not only accumulated at the sediment surface in some parts of the mangrove, but was also exported to the seafront. Direct release of bacteria and enhanced in situ production of fungi, as revealed by specific FAs, stimulated mangrove litter decomposition under effluent runoff condition. Also, microalgae released from ponds contributed to maintain high benthic chl-a concentrations in mangrove sediments in winter and to a shift in microphytobenthic community assemblage. Primary production was high whether the farm released effluent or not which questioned the temporary effect of shrimp farm effluent on benthic microalgae dynamic. This study outlined that mangrove benthic organic matter was qualitatively and quantitatively affected by shrimp farm effluent release and that responses to environmental condition changes likely depended on mangrove stand characteristics. Copyright © 2015 Elsevier B.V. All rights reserved.

  15. Riverine transport of terrestrial organic matter to the North Catalan margin, NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Sanchez-Vidal, Anna; Higueras, Marina; Martí, Eugènia; Liquete, Camino; Calafat, Antoni; Kerhervé, Philippe; Canals, Miquel

    2013-11-01

    Rivers are the primary pathway for organic matter transport from the terrestrial to the marine environment and, thus, river fluxes are critical in regulating the quantity of terrestrial organic matter that reaches the coastal ecosystems. Hydrodynamic processes typical of the coastal zone can lead to the transport of terrestrial organic matter across the continental shelf and beyond. Such organic matter can eventually reach the deep margin and basin ecosystems. Riverine inputs of organic matter to the sea can be a significant food source to marine ecosystems contributing to carbon cycling in these ecosystems. In order to assess the marine carbon cycle it is essential to know the biogeochemical characteristics and temporal dynamics of the fluvial organic matter input discharged by rivers to the coastal zone. In this study we present a one and a half year long (November 2008 to May 2010) assessment on organic carbon (OC) and nitrogen (N) inputs from the three main rivers discharging into the North Catalan margin (Tordera, Ter and Fluvià, from south to north). Furthermore, we investigate the characteristics of the particulate organic matter discharged by these rivers by means of stable isotopic (δ13C and δ15N) and grain size analyses. We found that the hydrological regime of the rivers is a relevant factor in regulating the quantity and mediating the quality of organic matter inputs to the North Catalan margin. Overall, the three main rivers discharging into the study area deliver 1266 and 159 tonnes of terrestrial OC and N per year, respectively, to the coastal zone. Most of the OC and N load is transported during floods, which indicates that the Mediterranean climate of the area, with a strong seasonal contrast in precipitation, determines the timing of the main inputs of OC and N to the sea. Therefore, the annual OC and N load experiences a high temporal variability associated to the number and magnitude of floods with in each hydrological year. In addition, we

  16. Contribution of species-specific chemical signatures to soil organic matter in Kohala, HI.

    NASA Astrophysics Data System (ADS)

    Stewart, C. E.; Amatangelo, K.; Neff, J. C.

    2008-12-01

    Soil organic matter (SOM) inherits much of its chemical structure from the dominant vegetation, including phenolic (lignin-derived), aromatic, and aliphatic (cutin and wax-derived) compounds. The Hawaiian fern species Dicranopteris decomposes more slowly than the angiosperm, Cheirodendron due to high concentrations of recalcitrant C compounds. These aliphatic fern leaf waxes are well-preserved and may comprise a large portion of the recalcitrant organic matter in these soils. Our objective was to determine the chemical signature of fern and angiosperm vegetation types and trace the preservation or loss of those compounds into the soil. We collected live tissue, litter, roots, and soil (<53 μm) from five dominant vegetation types including two angiosperms Cheirodendron and Metrosideros, two basal ferns Dicranopteris and Cibotium and a polypod fern Diplazium in Kohala, HI. We characterized them via TMAH-pyrolysis-gas chromatography-mass spectrometry. We found distinct chemical differences between angiosperm and fern vegetation; angiosperm contained more G- and S-derived lignin structures and the fern species contained greater relative abundances of P-derived lignin and tannin-derivatives. There was a general decrease of lignin-derived phenolic compounds from live to litter to soils and an increase in more recalcitrant, aromatic and aliphatic C. Recalcitrant fern-derived cutin and leaf waxes (alkene and alkanes structures) were evident in the soils, but clear species differences were not observed. Although ferns contain distinct lipid and wax-derived compounds, soils developed under fern do not appear to accumulate these compounds in SOM.

  17. Effect of organic matter on CO(2) hydrate phase equilibrium in phyllosilicate suspensions.

    PubMed

    Park, Taehyung; Kyung, Daeseung; Lee, Woojin

    2014-06-17

    In this study, we examined various CO2 hydrate phase equilibria under diverse, heterogeneous conditions, to provide basic knowledge for successful ocean CO2 sequestration in offshore marine sediments. We investigated the effect of geochemical factors on CO2 hydrate phase equilibrium. The three-phase (liquid-hydrate-vapor) equilibrium of CO2 hydrate in the presence of (i) organic matter (glycine, glucose, and urea), (ii) phyllosilicates [illite, kaolinite, and Na-montmorillonite (Na-MMT)], and (iii) mixtures of them was measured in the ranges of 274.5-277.0 K and 14-22 bar. Organic matter inhibited the phase equilibrium of CO2 hydrate by association with water molecules. The inhibition effect decreased in the order: urea < glycine < glucose. Illite and kaolinite (unexpandable clays) barely affected the CO2 hydrate phase equilibrium, while Na-MMT (expandable clay) affected the phase equilibrium because of its interlayer cations. The CO2 hydrate equilibrium conditions, in the illite and kaolinite suspensions with organic matter, were very similar to those in the aqueous organic matter solutions. However, the equilibrium condition in the Na-MMT suspension with organic matter changed because of reduction of its inhibition effect by intercalated organic matter associated with cations in the Na-MMT interlayer.

  18. Non-invasive localization of organic matter in soil aggregates using SR-μCT

    NASA Astrophysics Data System (ADS)

    Peth, Stephan; Mordhorst, Anneka; Chenu, Claire; Uteau Puschmann, Daniel; Garnier, Patricia; Nunan, Naoise; Pot, Valerie; Beckmann, Felix; Ogurreck, Malte

    2014-05-01

    Knowledge of the location of soil organic matter (SOM) and its spatial association to soil structure is an important step in improving modeling approaches for simulating organic matter turnover processes. Advanced models for carbon mineralization are able to account for the 3D distribution of SOM which is assumed to influence mineralisation. However, their application is still limited by the fact that no method exists to non-invasively determine the 3D spatial distribution of SOM in structured soils. SR-based X-ray microtomography (SR-µCT) is an advanced and promising tool in gaining knowledge on the 3-dimensional organization of soil phases (minerals, organic matter, water, air) which on a voxel level could be implemented into spatially explicit models. However, since the contrast of linear attenuation coefficients of soil organic matter on the one hand and mineral components and water on the other hand are relatively low, especially when materials are finely dispersed, organic matter within the soil pore space is often not resolved in ordinary X-ray absorption contrast imaging. To circumvent this problem we have developed a staining procedure for organic matter using Osmium-tetroxide since Osmium is an element with an absorption edge at a higher X-ray energy level. Osmium is known from transmission electron microscopy analysis (TEM) to stain organic matter specifically and irreversibly while having an absorption edge at approximately 74 keV. We report on the application of a novel Osmium vapor staining method to analyze differences in organic matter content and identify small scale spatial distribution of SOM in soil aggregates. To achieve this we have taken soil aggregate samples (6-8 mm across) obtained from arable soils differing in soil management. Aggregate samples were investigated by synchrotron-based X-ray microtomography (SR-µCT) after staining the sample with Osmium-tetroxide (OsO4) vapor. We utilized the monochromatic X-ray beam to locate osmium

  19. Evidence for Changes in 81PIWild 2 Organic Matter Since Collection and Comparison of 82PIWild 2 and IDP Organic Matter to Access the Thermal Effects of Aerogel Capture

    NASA Technical Reports Server (NTRS)

    Wirick, S.; Flynn, G. J.; Keller, L.; Messenger, Nakamura; Sandford, S. A.; Zolensky, M. E.; Peltzer, C.; Jacobsen, C.

    2009-01-01

    NASA s Stardust spacecraft collected cometary material during its passage through the dust coma of comet 81P/Wild 2 on January 2nd, 2004 and delivered this material to Earth on January 15th 2006. The first fragment we analyzed during the preliminary examination was partially vaporized by the X-ray beam. The carbonaceous material that survived was re-analysis approx.2 months later and the carbon spectrum for this material had significantly changed from what we first observed.. We have observed similar changes to the carbonaceous matter in some interplanetary dust particles ( IDPs). Some of the 81P/Wild 2 organic matter volatilized upon impact with the aerogel as observed using IR spectroscopy where IR spectra were collected several mms away from sample tracks [1]. The time-temperature profile experienced by any particular 81P/Wild 2 grain during aerogel capture is not known, although Brownlee, et al. suggest that fine-grained materials, <1 micron in size, fragmented and then partially vaporized during collection, while particles much larger then 1 micron in size were captured intact [2]. Nearly all organic matter is subject to thermal alteration. To assess the heating and alteration experienced by the 81P/Wild 2 organic matter during capture we are comparing 81P/Wild2 organic matter with IDP organic matter where we have evidence of heating in the IDP [3,4].

  20. Influence of soil organic matter composition on the partition of organic compounds

    USGS Publications Warehouse

    Rutherford, D.W.; Chiou, C.T.; Klle, D.E.

    1992-01-01

    The sorption at room temperature of benzene and carbon tetrachloride from water on three high-organic-content soils (muck, peat, and extracted peat) and on cellulose was determined in order to evaluate the effect of sorbent polarity on the solute partition coefficients. The isotherms are highly linear for both solutes on all the organic matter samples, which is consistent with a partition model. For both solutes, the extracted peat shows the greatest sorption capacity while the cellulose shows the lowest capacity; the difference correlates with the polar-to-nonpolar group ratio [(O + N)/C] of the sorbent samples. The relative increase of solute partition coefficient (Kom) with a decrease of sample polar content is similar for both solutes, and the limiting sorption capacity on a given organic matter sample is comparable between the solutes. This observation suggests that one can estimate the polarity effect of a sample of soil organic matter (SOM) on Kom of various nonpolar solutes by determining the partition coefficient of single nonpolar solute when compositional analysis of the SOM is not available. The observed dependence of Kom on sample polarity is used to account for the variation of Kom values of individual compounds on different soils that results from change in the polar group content of SOM. On the assumption that the carbon content of SOM in "ordinary soils" is 53-63%, the calculated variation of Kom is a factor of ???3. This value is in agreement with the limit of variation of most Kom data with soils of relatively high SOM contents.

  1. Effect of organic matter properties, clay mineral type and thermal maturity on gas adsorption in organic-rich shale systems

    USGS Publications Warehouse

    Zhang, Tongwei; Ellis, Geoffrey S.; Ruppel, Stephen C.; Milliken, Kitty; Lewan, Mike; Sun, Xun; Baez, Luis; Beeney, Ken; Sonnenberg, Steve

    2013-01-01

    A series of CH4 adsorption experiments on natural organic-rich shales, isolated kerogen, clay-rich rocks, and artificially matured Woodford Shale samples were conducted under dry conditions. Our results indicate that physisorption is a dominant process for CH4 sorption, both on organic-rich shales and clay minerals. The Brunauer–Emmett–Teller (BET) surface area of the investigated samples is linearly correlated with the CH4 sorption capacity in both organic-rich shales and clay-rich rocks. The presence of organic matter is a primary control on gas adsorption in shale-gas systems, and the gas-sorption capacity is determined by total organic carbon (TOC) content, organic-matter type, and thermal maturity. A large number of nanopores, in the 2–50 nm size range, were created during organic-matter thermal decomposition, and they significantly contributed to the surface area. Consequently, methane-sorption capacity increases with increasing thermal maturity due to the presence of nanopores produced during organic-matter decomposition. Furthermore, CH4 sorption on clay minerals is mainly controlled by the type of clay mineral present. In terms of relative CH4 sorption capacity: montmorillonite ≫ illite – smectite mixed layer > kaolinite > chlorite > illite. The effect of rock properties (organic matter content, type, maturity, and clay minerals) on CH4 adsorption can be quantified with the heat of adsorption and the standard entropy, which are determined from adsorption isotherms at different temperatures. For clay-mineral rich rocks, the heat of adsorption (q) ranges from 9.4 to 16.6 kJ/mol. These values are considerably smaller than those for CH4 adsorption on kerogen (21.9–28 kJ/mol) and organic-rich shales (15.1–18.4 kJ/mol). The standard entropy (Δs°) ranges from -64.8 to -79.5 J/mol/K for clay minerals, -68.1 to -111.3 J/mol/K for kerogen, and -76.0 to -84.6 J/mol/K for organic-rich shales. The affinity of CH4 molecules for sorption on organic matter

  2. Lability of Secondary Organic Particulate Matter

    DOE PAGES

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; ...

    2016-10-24

    Accurate simulations of the consenctrations of atmospheric organic particulate matter (PM) are needed for predicting energy flow in the Earth’s climate system. In the past, simulations of organic PM widely assume equilibrium partitioning of semivolatile organic compounds (SVOCs) between the PM and surrounding vapor. Herein, we test this assumption by measuring evaporation rates and associated vapor mass concentration of organic films representative of atmospheric PM. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH), indicating equilibrium partitioning above a transition RH but not below. In contrast for films representing biogenic PM,more » no threshold was observed, indicating equilibrium partitioning at all RHs. The results suggest that the mass lability of atmospheric organic PM can differ in consequential ways among Earth’s natural biomes, polluted regions, and regions of land-use change, and these differences need to be considered when simulating atmospheric organic PM.« less

  3. Accumulation of atmospheric sulfur in some Costa Rican soils

    USGS Publications Warehouse

    Bern, Carleton R.; Townsend, Alan R.

    2013-01-01

    Sulfur is one of the macronutrient elements whose sources to terrestrial ecosystems should shift from dominance by rock-weathering to atmospheric deposition as soils and underlying substrate undergo progressive weathering and leaching. However, the nature and timing of this transition is not well known. We investigated sources of sulfur to tropical rain forests growing on basalt-derived soils in the Osa Peninsula region of Costa Rica. Sulfur sources were examined using stable isotope ratios (δ34S) and compared to chemical indices of soil development. The most weathered soils, and the forests they supported, are dominated by atmospheric sulfur, while a less weathered soil type contains both rock-derived and atmospheric sulfur. Patterns of increasing δ34S with increasing soil sulfur concentration across the landscape suggest atmospheric sulfur is accumulating, and little rock-derived sulfur has been retained. Soil sulfur, minus adsorbed sulfate, is correlated with carbon and nitrogen, implying that sulfur accumulation occurs as plants and microbes incorporate sulfur into organic matter. Only the lower depth increments of the more weathered soils contained significant adsorbed sulfate. The evidence suggests a pattern of soil development in which sulfur-bearing minerals in rock, such as sulfides, weather early relative to other minerals, and the released sulfate is leached away. Sulfur added via atmospheric deposition is retained as organic matter accumulates in the soil profile. Adsorbed sulfate accumulates later, driven by changes in soil chemistry and mineralogy. These aspects of sulfur behavior during pedogenesis in this environment may hasten the transition to dominance by atmospheric sources.

  4. Organic matter degradation drives benthic cyanobacterial mat abundance on Caribbean coral reefs.

    PubMed

    Brocke, Hannah J; Polerecky, Lubos; de Beer, Dirk; Weber, Miriam; Claudet, Joachim; Nugues, Maggy M

    2015-01-01

    Benthic cyanobacterial mats (BCMs) are impacting coral reefs worldwide. However, the factors and mechanisms driving their proliferation are unclear. We conducted a multi-year survey around the Caribbean island of Curaçao, which revealed highest BCM abundance on sheltered reefs close to urbanised areas. Reefs with high BCM abundance were also characterised by high benthic cover of macroalgae and low cover of corals. Nutrient concentrations in the water-column were consistently low, but markedly increased just above substrata (both sandy and hard) covered with BCMs. This was true for sites with both high and low BCM coverage, suggesting that BCM growth is stimulated by a localised, substrate-linked release of nutrients from the microbial degradation of organic matter. This hypothesis was supported by a higher organic content in sediments on reefs with high BCM coverage, and by an in situ experiment which showed that BCMs grew within days on sediments enriched with organic matter (Spirulina). We propose that nutrient runoff from urbanised areas stimulates phototrophic blooms and enhances organic matter concentrations on the reef. This organic matter is transported by currents and settles on the seabed at sites with low hydrodynamics. Subsequently, nutrients released from the organic matter degradation fuel the growth of BCMs. Improved management of nutrients generated on land should lower organic loading of sediments and other benthos (e.g. turf and macroalgae) to reduce BCM proliferation on coral reefs.

  5. Priming of native soil organic matter by pyrogenic organic matter

    NASA Astrophysics Data System (ADS)

    DeCiucies, Silene; Dharmakeerthi, Saman; Whitman, Thea; Woolf, Dominic; Lehmann, Johannes

    2015-04-01

    Priming, in relation to pyrogenic organic matter (PyOM), describes the change in mineralization rate of non-pyrogenic ("native") soil organic matter (nSOM) due to the addition of PyOM. Priming may be 'positive', in that the addition of pyC increases the mineralization rate of native SOM, or 'negative', in that the mineralization rate of nSOM is decreased. Reasons for increased mineralization may include: (i) co-metabolism: microbial decomposition of labile C-additions increases microbial activity, and facilitates additional decomposition of npSOC by active enzymes; (ii) stimulation: substrate additions result in lifted pH, nutrient, oxygen, or water constraints resulting in increased microbial activity. Decreased mineralization may be a result of: (i) inhibition: the opposite of stimulation whereby constraints are aggravated by substrate addition. Substrate addition may also cause inhibition by interfering with enzymes or signaling compounds; (ii) preferential substrate utilization: labile fraction of PyOM additions are preferentially used up by microbes thus causing a decrease in nSOC decomposition; (iii) sorption: organic compounds are adsorbed onto PyOM surfaces, decreasing their rate of mineralization; (iv) stabilization: formation of organo-mineral associations forms stable SOC pools. We have conducted a suite of experiments to investigate these potential interactions. In a seven year long incubation study, PyOM additions increased total OM mineralization for the first 2.5 years, was equal to control after 6.2 years, and was 3% lower after 7.1 years. Cumulative nSOM mineralization was 23% less with the PyOM additions than without, and over 60% of the added PyOM was present in the labile soil fraction after the 7.1 year incubation. Two additional incubation studies, one with and without plants, showed greater nSOM mineralization in the short term and lower nSOM mineralization over the long term. Increased nSOC mineralization due to the presence of plants was

  6. Organic matter preserved in 3-billion-year-old mudstones at Gale crater, Mars.

    PubMed

    Eigenbrode, Jennifer L; Summons, Roger E; Steele, Andrew; Freissinet, Caroline; Millan, Maëva; Navarro-González, Rafael; Sutter, Brad; McAdam, Amy C; Franz, Heather B; Glavin, Daniel P; Archer, Paul D; Mahaffy, Paul R; Conrad, Pamela G; Hurowitz, Joel A; Grotzinger, John P; Gupta, Sanjeev; Ming, Doug W; Sumner, Dawn Y; Szopa, Cyril; Malespin, Charles; Buch, Arnaud; Coll, Patrice

    2018-06-08

    Establishing the presence and state of organic matter, including its possible biosignatures, in martian materials has been an elusive quest, despite limited reports of the existence of organic matter on Mars. We report the in situ detection of organic matter preserved in lacustrine mudstones at the base of the ~3.5-billion-year-old Murray formation at Pahrump Hills, Gale crater, by the Sample Analysis at Mars instrument suite onboard the Curiosity rover. Diverse pyrolysis products, including thiophenic, aromatic, and aliphatic compounds released at high temperatures (500° to 820°C), were directly detected by evolved gas analysis. Thiophenes were also observed by gas chromatography-mass spectrometry. Their presence suggests that sulfurization aided organic matter preservation. At least 50 nanomoles of organic carbon persists, probably as macromolecules containing 5% carbon as organic sulfur molecules. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

  7. Soil Organic Matter and Soil Productivity: Searching for the Missing Link

    Treesearch

    Felipe G. Sanchez

    1998-01-01

    Soil-organic matter (SOM) is a complex array of components including soil fauna and flora at different stages of decomposition (Berg et al., 1982). Its concentration in soils can vary from 0.5% in mineral soils to almost 100% in peat soils (Brady, 1974). Organic matter (OM) in the surface mineral soil is considered a major determinant of forest ecosystem productivity...

  8. Depletion of 13C in Cretaceous marine organic matter: Source, diagenetic, or environmental sigal?

    USGS Publications Warehouse

    Dean, W.E.; Arthur, M.A.; Claypool, G.E.

    1986-01-01

    Geochemical studies of Cretaceous strata rich in organic carbon (OC) from Deep Sea Drilling Project (DSDP) sites and several land sections reveal several consistent relationships among amount of OC, hydrocarbon generating potential of kerogen (measured by pyrolysis as the hydrogen index, HI), and the isotopic composition of the OC. First, there is a positive correlation between HI and OC in strata that contain more than about 1% OC. Second, percent OC and HI often are negatively correlated with carbon isotopic composition (?? 13C) of kerogen. The relationship between HI and OC indicates that as the amount of organic matter increases, this organic matter tends to be more lipid rich reflecting the marine source of the organic matter. Cretaceous samples that contain predominantly marine organic matter tend to be isotopically lighter than those that contain predominantly terrestrial organic matter. Average ?? 13C values for organic matter from most Cretaceous sites are between -26 and -28???, and values heavier than about -25??? occur at very few sites. Most of the ?? 13C values of Miocene to Holocene OC-rich strata and modern marine plankton are between -16 to -23???. Values of ??13C of modern terrestrial organic matter are mostly between -23 and -33???. The depletion of terrestial OC in 13C relative to marine planktonic OC is the basis for numerous statements in the literature that isotopically light Cretaceous organic matter is of terrestrial origin, even though other organic geochemical and(or) optical indicators show that the organic matter is mainly of marine origin. A difference of about 5??? in ?? 13C between modern and Cretaceous OC-rich marine strata suggests either that Cretaceous marine planktonic organic matter had the same isotopic signature as modern marine plankton and that signature has been changed by diagenesis, or that OC derived from Cretaceous marine plankton was isotopically lighter by about 5??? relative to modern plankton OC. Diagenesis does

  9. Insight into dissolved organic matter fractions in Lake Wivenhoe during and after a major flood.

    PubMed

    Aryal, Rupak; Grinham, Alistair; Beecham, Simon

    2016-03-01

    Dissolved organic matter is an important component of biogeochemical processes in aquatic environments. Dissolved organic matter may consist of a myriad of different fractions and resultant processing pathways. In early January 2011, heavy rainfall occurred across South East Queensland, Australia causing significant catchment inflow into Lake Wivenhoe, which is the largest water supply reservoir for the city of Brisbane, Australia. The horizontal and vertical distributions of dissolved organic matter fractions in the lake during the flood period were investigated and then compared with stratified conditions with no catchment inflows. The results clearly demonstrate a large variation in dissolved organic matter fractions associated with inflow conditions compared with stratified conditions. During inflows, dissolved organic matter concentrations in the reservoir were fivefold lower than during stratified conditions. Within the dissolved organic matter fractions during inflow, the hydrophobic and humic acid fractions were almost half those recorded during the stratified period whilst low molecular weight neutrals were higher during the flood period compared to during the stratified period. Information on dissolved organic matter and the spatial and vertical variations in its constituents' concentrations across the lake can be very useful for catchment and lake management and for selecting appropriate water treatment processes.

  10. Removing organic matter from sulfate-rich wastewater via sulfidogenic and methanogenic pathways.

    PubMed

    Vilela, Rogerio Silveira; Damianovic, Márcia Helena Rissato Zamariolli; Foresti, Eugenio

    2014-01-01

    The simultaneous organic matter removal and sulfate reduction in synthetic sulfate-rich wastewater was evaluated for various chemical oxygen demand (COD)/sulfate ratios applied in a horizontal-flow anaerobic immobilized sludge (HAIS) reactor. At higher COD/sulfate ratios (12.5 and 7.5), the removal of organic matter was stable, likely due to methanogenesis. A combination of sulfate reduction and methanogenesis was clearly established at COD/sulfate ratios of 3.0 and 1.9. At a COD/sulfate ratio of 1.0, the organic matter removal was likely influenced by methanogenesis inhibition. The quantity of sulfate removed at a COD/sulfate ratio of 1.0 was identical to that obtained at a ratio of 1.9, indicating a lack of available electron donors for sulfidogenesis. The sulfate reduction and organic matter removal were not maximized at the same COD/sulfate ratio; therefore, competitive inhibition must be the predominant mechanism in establishing an electron flow.

  11. Plutonium Immobilization and Mobilization by Soil Organic Matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Santschi, Peter H.; Schwehr, Kathleen A.; Xu, Chen

    The human and environmental risks associated with Pu disposal, remediation, and nuclear accidents scenarios stems mainly from the very long half-lives of several of its isotopes. The SRS, holding one-third of the nation’s Pu inventory, has a long-term stewardship commitment to investigation of Pu behavior in the groundwater and downgradient vast wetlands. Pu is believed to be essentially immobile due to its low solubility and high particle reactivity to mineral phase or natural organic matter (NOM). For example, in sediments collected from a region of SRS, close to a wetland and a groundwater plume, 239,240Pu concentrations suggest immobilization by NOMmore » compounds, as Pu correlate with NOM contents. Micro-SXRF data indicate, however, that Pu does not correlate with Fe. However, previous studies reported Pu can be transported several kilometers in surface water systems, in the form of a colloidal organic matter carrier, through wind/water interactions. The role of NOM in both immobilizing or re-mobilizing Pu thus has been demonstrated. Our results indicate that more Pu (IV) than (V) was bound to soil colloidal organic matter (COM), amended at far-field concentrations. Contrary to expectations, the presence of NOM in the F-Area soil did not enhance Pu fixation to the organic-rich soil, when compared to the organic-poor soil or the mineral phase from the same soil source, due to the formation of COM-bound Pu. Most importantly, Pu uptake by organic-rich soil decreased with increasing pH because more NOM in the colloidal size desorbed from the particulate fraction at elevated pH, resulting in greater amounts of Pu associated with the COM fraction. This is in contrast to previous observations with low-NOM sediments or minerals, which showed increased Pu uptake with increasing pH levels. This demonstrates that despite Pu immobilization by NOM, COM can convert Pu into a more mobile form. Sediment Pu concentrations in the SRS F-Area wetland were correlated to total

  12. A Robust Analysis Method For Δ13c Signal Of Bulk Organic Matter In Speleothems

    NASA Astrophysics Data System (ADS)

    Bian, F.; Blyth, A. J.; Smith, C.; Baker, A.

    2017-12-01

    Speleothems preserve organic matter that is derived from both the surface soil and cave environments. This organic matter can be used to understand paleoclimate and paleoenvironments. However, a stable and quick micro-analysis method to measure the δ13C signals from speleothem organic matter separate from the total δ13C remains absent. And speleothem organic geochemistry is still relatively unexplored compared to inorganic geochemistry. In this research, for the organic matter analysis, bulk homogeneous power samples were obtained from one large stalagmite. These were dissolved by phosphoric acid to produce the aqueous solution. Then, the processed solution was degassed through a rotational vacuum concentrator. A liquid chromatograph was coupled to IRMS to control the oxidization and the measurement of analytes. This method is demonstrated to be robust for the analysis of speleothem d13C organic matter analysis under different preparation and instrumental settings, with the low standard deviation ( 0.2‰), and low sample consumption (<25 mg). Considering the complexity of cave environments, this method will be useful in further investigations the δ13C of entrapped organic matter and environmental controls in other climatic and ecological contexts, including the determination of whether vegetation or soil microbial activity is the dominant control on speleothem d13C of organic matter.

  13. Organic matter dynamics and stable isotopes for tracing sources of suspended sediment

    NASA Astrophysics Data System (ADS)

    Schindler Wildhaber, Y.; Liechti, R.; Alewell, C.

    2012-01-01

    Suspended sediment (SS) and organic matter in rivers can harm brown trout Salmo trutta by impact on health and fitness of free swimming fish and siltation of the riverbed. The later results in a decrease of hydraulic conductivity and therefore smaller oxygen supply to the salmonid embryos. Additionally, oxygen demand within riverbeds will increase as the pool of organic matter increases. We assessed the temporal and spatial dynamics of sediment, carbon (C) and nitrogen (N) during the brown trout spawning season and used C isotopes as well as the C/N atomic ratio to distinguish autochthonous and allochthonous sources of organic matter in SS loads. The visual basic program IsoSource with 13Ctot and 15N as input isotopes was used to quantify the sources of SS in respect of time and space. Organic matter fractions in the infiltrated and suspended sediment were highest during low flow periods with small sediment loads and lowest during high flow periods with high sediment loads. Peak values in nitrate and dissolved organic C were measured during high flow and precipitation probably due to leaching from pasture and arable land. The organic matter was of allochthonous sources as indicated by the C/N atomic ratio and δ13Corg. Organic matter in SS increased from up- to downstream due to pasture and arable land. The fraction of SS originating from upper watershed riverbed sediment increased at all sites during high flow. Its mean fraction decreased from up- to downstream. During base flow conditions, the major sources of SS are pasture and arable land. The later increased during rainy and warmer periods probably due to snow melting and erosion processes. These modeling results support the measured increased DOC and NO3 concentrations during high flow.

  14. Contribution of plant lignin to the soil organic matter formation and stabilization

    USDA-ARS?s Scientific Manuscript database

    Lignin is the third most abundant plant constituent after cellulose and hemicellulose and thought to be one of the building blocks for soil organic matter formation. Lignin can be used as a predictor for long-term soil organic matter stabilization and C sequestration. Soils and humic acids from fo...

  15. Characterization of Natural Organic Matter by FeCl3 Coagulation

    NASA Astrophysics Data System (ADS)

    Cahyonugroho, O. H.; Hidayah, E. N.

    2018-01-01

    Natural organic matter (NOM) is heterogenous mixture of organic compounds that enter the water from various decomposition and metabolic reactions, including animal, plant, domestic and industrial wastes. NOM refers to group of carbon-based compounds that are found in surface water and ground water. The aim of the study is to assess organic matter characteristics in Jagir River as drinking water source and to characterize the organic components that could be removed during coagulation. Coagulation is the common water treatment process can be used to remove NOM with FeCl3 coagulant in various dosage. NOM surrogates, including total organic carbon (TOC), ultraviolet absorbance at 254 nm (UV254) and specific UV absorbance (SUVA) were chosen to assess the organic removal. Results of jar test experiments showed that NOM can be removed about 40% of NOM surrogates with 200 mg/L FeCl3. About 60% removal of total organic fraction, which is mainly humic substances, as detected by size exclusion chromatography (SEC).

  16. Preservation of organic matter on Mars by sulfur

    NASA Astrophysics Data System (ADS)

    Eigenbrode, J. L.; Steele, A.; Summons, R. E.; McAdam, A.; Sutter, B.; Franz, H. B.; Freissinet, C.; Millan, M.; Glavin, D. P.; Szopa, C.; Conrad, P. G.; Mahaffy, P. R.

    2016-12-01

    Deltaic-lacustrine mudstones at Pahrump Hills, Gale Crater, Mars yielded a variety of sulfur-containing volatiles upon heating to 500-860°C, as detected by the Sample Analysis at Mars (SAM) instrument onboard the Curiosity rover. The detection of organosulfur compounds comprising thiophenes, dimethylsulfide and thiols by gas chromatography-mass spectrometry and evolved gas analyses, together with aromatic and other hydrocarbon molecules with distributions specific to the sample (i.e., not from the SAM background) indicate that some or all of these organic fragments released at high temperatures are indigenous to the mudstones. The organosulfur compounds are most likely derived from sulfur organics in the sediments. However, there is a possibility that sulfurization of some organic fragments occurred in the oven. On Earth, sulfurization of organic matter is a key process that aids preservation over geological time-scales. This is because it reduces reactive functional groups and adds cross links between small unstable molecules thereby converting them into recalcitrant macromolecules. Sulfurization of organic materials prior to deposition and during early diagenesis may have been a key mechanism responsible for organic matter preservation in the Murray formation mudstones. Sulfur-bearing organics have also been observed in carbonaceous meteorites and there is indication of their presence in the Tissint martian meteorite. A quantitative assessment of organosulfur compounds relative to their non-organic counterparts will be presented for the Murray formation mudstones analyzed by SAM and meteorites analyzed in the laboratory under similar analytical conditions.

  17. Dissolved organic matter in the unsaturated zone: the view from the cave

    NASA Astrophysics Data System (ADS)

    Baker, A.; Duan, W.; Rutlidge, H.; McDonough, L.; Oudone, P.; Meredith, K.; Andersen, M. S.; O'Carroll, D. M.; Coleborn, K.; Treble, P. C.

    2017-12-01

    Soil organic matter content is typically a few percent of the total soil composition. Diffuse recharge can mobilise some of this soil-derived organic matter. While soil pore water dissolved organic matter (DOM) concentrations are up to 100 ppm, the resulting groundwater dissolved organic matter concentration is typically less than 2ppm. Dissolved organic matter transported from the soil can be both biodegraded and sorbed to minerals, and the relative importance of these two processes in the unsaturated zone is poorly understood. Caves in karstified limestone uniquely provide direct access to water percolating from the soil to the groundwater. Cave percolation waters can be analysed for their DOM concentration and character. This provides insights into the extent and type of biological and chemical processing of DOM during transport from the soil to the groundwater. We determine the concentration and characteristics of DOM in cave percolation waters using liquid chromatography (LC-OCD) and optical spectrophotometry (fluorescence and absorbance). We sample DOM from multiple caves in SE Australia (Cathedral Cave, Wellington; South Glory and Harrie Wood Caves, Yarrangobilly), permitting comparison of unsaturated zone DOM properties at different depths (up to 30m below land surface) and different climate zones (montane and temperate). We use caves with long-term hydrological monitoring programs so that DOM in waters of contrasting residence times can be compared. Additionally, we compare these cave percolation water DOM characteristics to those from local and regional groundwater, sampled from nearby wells. Our results will help improve our understanding of how DOM is processed from soil to groundwater, and is also relevant to speleothem scientists interested in using organic matter preserved in speleothems as a paleoclimate or paleoenvironmental proxy.

  18. Sorption of benzimidazole anthelmintics to dissolved organic matter surrogates and sewage sludge.

    PubMed

    Kim, Hyo-Jung; Lee, Dong Soo; Kwon, Jung-Hwan

    2010-06-01

    The sorption coefficients of four rarely studied zwitterionic pharmaceuticals (benzimidazoles: fenbendazole, albendazole, thiabendazole and flubendazole) and four metabolites of fenbendazole to various dissolved organic matter surrogates (humic acid, sodium dodecyl sulfate micelle, hydroxypropyl-beta-cyclodextrin and liposomes made of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), and sewage sludge) were measured to extend the available sorption coefficients and eventually to evaluate their environmental fate in soil and water environment. For the entire range of dissolved organic matters, the more hydrophobic fenbendazole and albendazole had higher sorption coefficients than thiabendazole and flubendazole, indicating that the traditional hypothesis of hydrophobic interaction holds for zwitterionic benzimidazole anthelmintics. However, the sorption coefficients of a given benzimidazole to selected dissolved organic matters (DOMs) varied within an order of magnitude. The measured K(oc) values decreased in the order of fenbendazole, albendazole, thiabendazole and flubendazole for sewage sludge and hydroxypropyl-beta-cyclodextrin whereas the orders were different for the other DOM surrogates, implying the hydrophilic nature of sewage sludge. This was also supported by the (N+O)/C elemental ratio of the sewage sludge sample used in this study. The correlations between log K(oc) and log K(ow) were weak (r(2)=0.28-0.64) and the magnitude of the sorption coefficients to the hydrophilic organic matters (hydroxypropyl-beta-cyclodextrin and sewage sludge) were similar to or slightly smaller than those for the hydrophobic organic matters (humic acids and liposome). This suggests that specific hydrophilic interactions also play a significant role in the sorption of moderately hydrophobic benzimidazoles to organic matters. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  19. Impact of Native and Invasive Earthworm Activity on Forest Soil Organic Matter Dynamics

    NASA Astrophysics Data System (ADS)

    Top, Sara; Filley, Timothy

    2010-05-01

    Many northern North American forests are experiencing the introduction of exotic European lumbricid species earthworms with documented losses in litter layers, expansion of A-horizons, loss of the organic horizon, changes in fine root density, and shifts in microbial populations as a result. Some of these forests were previously devoid of these ecosystem engineers. We compare the soil isotope and molecular chemistry from two free air CO2 enrichment (FACE) forest experiments (aspen FACE at Rhinelander, Wisconsin and sweet gum FACE at Oak Ridge National Lab, Tennessee) that lie within the zones of earthworm invasion. These sites exhibit differences in amounts of exotic and native species as well as endogeic (predominantly mineral soil dwelling) and epigeic (litter and organic matter horizon dwelling) types. We investigated the impact of earthworm activity by tracking the relative abundance and stable carbon isotope compositions of lignin and substituted fatty acids extracted from isolated earthworms and their fecal pellets and from host soils. Additionally, 15N-labeled additions to the soil provide additional methods for tracking earthworm impacts. Indications of root vs leaf input to earthworm casts and fecal matter were derived from differences in the chemical composition of cutin, suberin, and lignin. The isotopically depleted CO2 used in FACE and the resulting isotopically depleted plant organic matter afford an excellent opportunity to assess biopolymer-specific turnover dynamics. We find that endogeic species are proportionately more responsible for fine root cycling while some epigeic species are responsible for microaggregation of foliar cutin. CSIA of fecal pellet lignin and SFA indicate how these biopolymer pools can be derived from variable sources, roots, background soil, foliar tissue within one earthworm. Additionally, CSIA indicates the distinct roles that different earthworm types have in "aging" surface soil biopolymer pools through encapsulation and

  20. Detrital Controls on Dissolved Organic Matter in Soils: A Field Experiment

    NASA Astrophysics Data System (ADS)

    Lajtha, K.; Crow, S.; Yano, Y.; Kaushal, S.; Sulzman, E.; Sollins, P.

    2004-12-01

    We established a long-term field study in an old growth coniferous forest at the H.J. Andrews Experimental Forest, OR, to address how detrital quality and quantity control soil organic matter accumulation and stabilization. The Detritus Input and Removal Treatments (DIRT) plots consist of treatments that double leaf litter, double woody debris inputs, exclude litter inputs, or remove root inputs via trenching. We measured changes in soil solution chemistry with depth, and conducted long-term incubations of bulk soils and soil density fractions from different treatments in order to elucidate effects of detrital inputs on the relative amounts and lability of different soil C pools. In the field, the effect of adding woody debris was to increase dissolved organic carbon (DOC) concentrations in O-horizon leachate and at 30 cm, but not at 100 cm, compared to control plots, suggesting increased rates of DOC retention with added woody debris. DOC concentrations decreased through the soil profile in all plots to a greater degree than did dissolved organic nitrogen (DON), most likely due to preferential sorption of high C:N hydrophobic dissolved organic matter (DOM) in upper horizons; %hydrophobic DOM decreased significantly with depth, and hydrophilic DOM had a much lower and narrower C:N ratio. Although laboratory extracts of different litter types showed differences in DOM chemistry, percent hydrophobic DOM did not differ among detrital treatments in the field, suggesting microbial equalization of DOM leachate in the field. In long-term laboratory incubations, light fraction material did not have higher rates of respiration than heavy fraction or bulk soils, suggesting that physical protection or N availability controls different turnover times of heavy fraction material, rather than differences in chemical lability. Soils from plots that had both above- and below-ground litter inputs excluded had significantly lower DOC loss rates, and a non-significant trend for lower

  1. Variation of preserving organic matter bound in interlayer of montmorillonite induced by microbial metabolic process.

    PubMed

    Zhao, Yulian; Dong, Faqin; Dai, Qunwei; Li, Gang; Ma, Jie

    2017-07-25

    This paper aimed to investigate the variation of preserving organic matter bound in the interlayer space of montmorillonite (Mt) induced by a microbe metabolic process. We selected Bacillus pumilus as the common soil native bacteria. The alteration of d 001 value, functional group, and C,N organic matter contents caused by bacteria were analyzed by XRD, FTIR, and elementary analyzer, respectively. XRD results showed that the d 001 value of montmorillonite increased with the concentration decreasing and decreased with the culture time increasing after interacting with bacteria indicating the interlayer space of montmorillonite was connected with the organic matter. The findings of long-term interaction by resetting culture conditions implied that the montmorillonite buffered the organic matter when the nutrition was enough and released again when the nutrition was lacking. The results of the elementary analyzer declared the content of organic matter was according to the d 001 value of montmorillonite and N organic matter which played a major impact. FTIR results confirmed that the Si-O stretching vibrations of Mt were affected by the functional group of organic matter. Our results showed that the montmorillonite under the influence of soil bacteria has a strong buffering capacity for preserving organic matter into the interlayer space in a short-term. It might provide critical implications for understanding the evolution process and the preservation of fertilization which was in the over-fertilization or less-fertilization conditions on farmland.

  2. Microbial and long-range terrestrial contributions of organic matter to Antarctica

    NASA Astrophysics Data System (ADS)

    Antony, R.; Grannas, A. M.; Priest, A. S.; Sleighter, R. L.; Meloth, T.; Hatcher, P.

    2012-12-01

    Composition and cycling of dissolved organic matter in glacial systems is important because of its great significance to global carbon dynamics, snow photochemistry, and air-snow exchange processes. But, due to the trace nature of specific organic components in Polar ice sheets, detecting and studying these species in molecular level detail has been an analytical challenge. Electrospray ionization coupled with Fourier transform ion cyclotron resonance mass spectrometry (ESI FT-ICR MS) enabled the elucidation of molecular level details of natural organic matter in snow samples collected along a coast to inland transect from the Princesses Elizabeth Land, East Antarctica. Thousands of distinct molecular species comprising of different compound classes were identified providing clues to the nature and sources of organic carbon in Antarctic snow. The major biochemical classes of compounds detected were lignins, tannins, carbohydrates, proteins, amino sugars, lipids, unsaturated hydrocarbons and condensed aromatics. Specifically, lignin molecules comprising up to 50% and compounds derived from algal and microbial biomass comprising up to 45% of the total assigned formulas dominated the organic carbon pool. The identification of a variety of lignin compounds demonstrates substantial input of vascular plant-derived materials to the identified molecular species, presumably from long range atmospheric transport and deposition. The detection of proteins, lipids and amino sugars suggests that a large proportion of the identified supraglacial organic matter likely originates from in situ microbial activity. This corroborates well with the presence of significant numbers of bacteria, picoplankton and microalgae in these samples. These results suggest that organic matter in the supraglacial environments have both a microbial and terrestrial provenance.

  3. The PETM in the coastal ocean: changes in redox, productivity, and organic matter sources recorded in mid-Atlantic sediments

    NASA Astrophysics Data System (ADS)

    Lyons, S. L.; Baczynski, A. A.; Vornlocher, J.; Freeman, K. H.

    2016-12-01

    Climate events in the geologic record reveal the broad array of Earth's responses to carbon cycle perturbations, and provide valuable insights to the predicted impacts of future anthropogenic climate change. The Paleocene-Eocene Thermal Maximum (PETM) hyperthermal was linked to a rapid injection of isotopically light carbon into Earth's ocean-atmosphere system, and this event serves as the best-known analogue for anthropogenic climate change. The addition of 4500 Gt CO2 over < 20,000 years, estimated based on carbon isotope excursions of 3-5‰ in marine and terrestrial records, was accompanied by abrupt global warming of 5-9 oC. Changes in ocean redox chemistry, productivity, sediment accumulation, and organic matter sourcing often accompany climate and carbon cycle perturbations and have been implicated in PETM off-shore ocean records. Yet, despite numerous studies of biomarkers and organic matter in terrestrial and marine PETM records, we lack organic records from truly coastal environments, leaving a gap in our understanding of the land-ocean interface and how the shallow marine environments changed during the PETM. To better understand the effects of climate change on coastal sites and the marine sedimentary records during the PETM, we investigated the role of redox, productivity, and organic matter sourcing using recently collected cores from the paleo-Atlantic shelf. These new coastal PETM records provide needed datasets to understand biogeochemical changes in the shallow marine environment. Here, we present lipid biomarkers (pristane, phytane, n-alkanes, hopanoids, steranes, GDGTs) and compound-specific carbon isotope data along a transect from proximal coastal to more distal inner shelf. These molecular records help detail the intensity of water column stratification, productivity, and carbon source changes, as well as shifting terrestrial and marine inputs. Constraining the marine carbon isotope excursion, organic matter sourcing, and water column

  4. The Origin of Organic Matter in the Solar System: Evidence from Interplanetary Dust Particles

    NASA Technical Reports Server (NTRS)

    Flynn, G. J.; Keller, L. P.; Jacobsen, C.; Wirick, S.

    2001-01-01

    The origin of the organic matter in interplanetary materials has not been established. A variety of mechanisms have been proposed, with two extreme cases being a Fisher-Tropsch type process operating in the gas phase of the solar nebula or a Miller-Urey type process, which requires interaction with an aqueous fluid, presumably occurring on an asteroid. In the Fisher-Tropsch case, we might expect similar organic matter in hydrated and anhydrous interplanetary materials. However, aqueous alteration is required in the case of the Miller-Urey process, and we would expect to see organic matter preferentially in interplanetary materials that exhibit evidence of aqueous activity, such as the presence of hydrated silicates. The types and abundance of organic matter in meteorites have been used as an indicator of the origin of organic matter in the Solar System. Indigenous complex organic matter, including amino acids, has been found in hydrated carbonaceous chondrite meteorites, such as Murchison. Much lower amounts of complex organic matter, possibly only terrestrial contamination, have been found in anhydrous carbonaceous chondrite meteorites, such as Allende, that contain most of their carbon in elemental form. These results seem to favor production of the bulk of the organic matter in the Solar System by aqueous processing on parent bodies such as asteroids, a Miller-Urey process. However, the hydrated carbonaceous chondrite meteorites have approximately solar abundances of the moderately volatile elements, while all anhydrous carbonaceous chondrite meteorites have significantly lower contents of these moderately volatile elements. Two mechanisms, incomplete condensation or evaporation, both of which involve processing at approx. 1200 C, have been suggested to explain the lower content of the moderately volatile elements in all anhydrous meteorites. Additional information is contained in the original extended abstract.

  5. Comprehensive characterization of atmospheric organic matter in Fresno, California fog water

    USGS Publications Warehouse

    Herckes, P.; Leenheer, J.A.; Collett, J.L.

    2007-01-01

    Fogwater collected during winter in Fresno (CA) was characterized by isolating several distinct fractions and characterizing them by infrared and nuclear magnetic resonance (NMR) spectroscopy. More than 80% of the organic matter in the fogwater was recovered and characterized. The most abundant isolated fractions were those comprised of volatile acids (24% of isolated carbon) and hydrophilic acids plus neutrals (28%). Volatile acids, including formic and acetic acid, have been previously identified as among the most abundant individual species in fogwater. Recovered hydrophobic acids exhibited some properties similar to aquatic fulvic acids. An insoluble particulate organic matter fraction contained a substantial amount of biological material, while hydrophilic and transphilic fractions also contained material suggestive of biotic origin. Together, these fractions illustrate the important contribution biological sources make to organic matter in atmospheric fog droplets. The fogwater also was notable for containing a large amount of organic nitrogen present in a variety of species, including amines, nitrate esters, peptides, and nitroso compounds. ?? 2007 American Chemical Society.

  6. Comprehensive characterization of atmospheric organic matter in Fresno, California fog water.

    PubMed

    Herckes, Pierre; Leenheer, Jerry A; Collett, Jeffrey L

    2007-01-15

    Fogwater collected during winter in Fresno (CA) was characterized by isolating several distinct fractions and characterizing them by infrared and nuclear magnetic resonance (NMR) spectroscopy. More than 80% of the organic matter in the fogwater was recovered and characterized. The most abundant isolated fractions were those comprised of volatile acids (24% of isolated carbon) and hydrophilic acids plus neutrals (28%). Volatile acids, including formic and acetic acid, have been previously identified as among the most abundant individual species in fogwater. Recovered hydrophobic acids exhibited some properties similar to aquatic fulvic acids. An insoluble particulate organic matter fraction contained a substantial amount of biological material, while hydrophilic and transphilic fractions also contained material suggestive of biotic origin. Together, these fractions illustrate the important contribution biological sources make to organic matter in atmospheric fog droplets. The fogwater also was notable for containing a large amount of organic nitrogen present in a variety of species, including amines, nitrate esters, peptides, and nitroso compounds.

  7. Organic matter controls of soil water retention in an alpine grassland and its significance for hydrological processes

    NASA Astrophysics Data System (ADS)

    Yang, Fei; Zhang, Gan-Lin; Yang, Jin-Ling; Li, De-Cheng; Zhao, Yu-Guo; Liu, Feng; Yang, Ren-Min; Yang, Fan

    2014-11-01

    Soil water retention influences many soil properties and soil hydrological processes. The alpine meadows and steppes of the Qilian Mountains on the northeast border of the Qinghai-Tibetan Plateau form the source area of the Heihe River, the second largest inland river in China. The soils of this area therefore have a large effect on water movement and storage of the entire watershed. In order to understand the controlling factors of soil water retention and how they affect regional eco-hydrological processes in an alpine grassland, thirty-five pedogenic horizons in fourteen soil profiles along two facing hillslopes in typical watersheds of this area were selected for study. Results show that the extensively-accumulated soil organic matter plays a dominant role in controlling soil water retention in this alpine environment. We distinguished two mechanisms of this control. First, at high matric potentials soil organic matter affected soil water retention mainly through altering soil structural parameters and thereby soil bulk density. Second, at low matric potentials the water adsorbing capacity of soil organic matter directly affected water retention. To investigate the hydrological functions of soils at larger scales, soil water retention was compared by three generalized pedogenic horizons. Among these soil horizons, the mattic A horizon, a diagnostic surface horizon of Chinese Soil Taxonomy defined specially for alpine meadow soils, had the greatest soil water retention over the entire range of measured matric potentials. Hillslopes with soils having these horizons are expected to have low surface runoff. This study promotes the understanding of the critical role of alpine soils, especially the vegetated surface soils in controlling the eco-hydrological processes in source regions of the Heihe River watershed.

  8. SOIL NITROGEN TRANSFORMATIONS AND ROLE OF LIGHT FRACTION ORGANIC MATTER IN FOREST SOILS

    EPA Science Inventory

    Depletion of soil organic matter through cultivation may alter substrate availability for microbes, altering the dynamic balance between nitrogen (N) immobilization and mineralization. Soil light fraction (LF) organic matter is an active pool that decreases upon cultivation, and...

  9. Turnover of intra- and extra-aggregate organic matter at the silt-size scale

    Treesearch

    I. Virto; C. Moni; C. Swanston; C. Chenu

    2010-01-01

    Temperate silty soils are especially sensitive to organic matter losses associated to some agricultural management systems. Long-term preservation of organic C in these soils has been demonstrated to occur mainly in the silt- and clay-size fractions, although our knowledge about the mechanisms through which it happens remains unclear. Although organic matter in such...

  10. Soil organic carbon and nitrogen accumulation on coal mine spoils reclaimed with maritime pine (Pinus pinaster Aiton) in Agacli-Istanbul.

    PubMed

    Sever, Hakan; Makineci, Ender

    2009-08-01

    Mining operations on open coal mines in Agacli-Istanbul have resulted in the destruction of vast amounts of land. To rehabilitate these degraded lands, plantations on this area began in 1988. Twelve tree species were planted, however, the most planted tree species was maritime pine (Pinus pinaster Aiton). This study performed on 14 sample plots randomly selected in maritime pine plantations on coal mine soil/spoils in 2005. Soil samples were taken from eight different soil layers (0-1, 1-3, 3-5, 5-10, 10-20, 20-30, 30-40 and 40-50 cm) into the soil profile. On soil samples; fine soil fraction (<2 mm), soil acidity (pH), organic carbon (C(org)) and total nitrogen (N(t)) contents were investigated, and results were compared statistically among soil layers. As a result, 17 years after plantations, total forest floor accumulation determined as 17,973.20 kg ha(-1). Total nitrogen and organic matter amounts of forest floor were 113.90 and 14,640.92 kg ha(-1) respectively. Among soil layers, the highest levels of organic carbon (1.77%) and total nitrogen (0.096%) and the lowest pH value (pH 5.38) were found in 0-1 cm soil layer, and the variation differs significantly among soil layers. Both organic carbon and total nitrogen content decreased, pH values increased from 0-1 to 5-10 cm layer. In conclusion, according to results obtained maritime pine plantations on coal mine spoils; slow accumulation and decomposition of forest floor undergo simultaneously. Depending on these changes organic carbon and total nitrogen contents increased in upper layer of soil/spoil.

  11. Land Application of Wastes: An Educational Program. Organic Matter - Module 17, Objectives, and Script.

    ERIC Educational Resources Information Center

    Clarkson, W. W.; And Others

    This module sketches out the impact of sewage organic matter on soils. For convenience, that organic matter is separated into the readily decomposable compounds and the more resistant material (volatile suspended solids, refractory organics, and sludges). The fates of those organics are reviewed along with loading rates and recommended soil…

  12. Modeling physical and biogeochemical controls over carbon accumulation in a boreal forest soil

    USGS Publications Warehouse

    Carrasco, J.J.; Neff, J.C.; Harden, J.W.

    2006-01-01

    Boreal soils are important to the global C cycle owing to large C stocks, repeated disturbance from fire, and the potential for permafrost thaw to expose previously stable, buried C. To evaluate the primary mechanisms responsible for both short- and long-term C accumulation in boreal soils, we developed a multi-isotope (12,14C) Soil C model with dynamic soil layers that develop through time as soil organic matter burns and reaccumulates. We then evaluated the mechanisms that control organic matter turnover in boreal regions including carbon input rates, substrate recalcitrance, soil moisture and temperature, and the presence of historical permafrost to assess the importance of these factors in boreal C accumulation. Results indicate that total C accumulation is controlled by the rate of carbon input, decomposition rates, and the presence of historical permafrost. However, unlike more temperate ecosystems, one of the key mechanisms involved in C preservation in boreal soils examined here is the cooling of subsurface soil layers as soil depth increases rather than increasing recalcitrance in subsurface soils. The propagation of the 14C bomb spike into soils also illustrates the importance of historical permafrost and twentieth century warming in contemporary boreal soil respiration fluxes. Both 14C and total C simulation data also strongly suggest that boreal SOM need not be recalcitrant to accumulate; the strong role of soil temperature controls on boreal C accumulation at our modeling test site in Manitoba, Canada, indicates that carbon in the deep organic soil horizons is probably relatively labile and thus subject to perturbations that result from changing climatic conditions in the future. Copyright 2006 by the American Geophysical Union.

  13. Molecular characterization of macrophyte-derived dissolved organic matters and their implications for lakes

    USDA-ARS?s Scientific Manuscript database

    Chemical properties of whole organic matter (OM) and its dissolved organic matter (DOM) fraction from six dominant macrophytes in Lake Dianchi were comparatively characterized, and their environmental implications were discussed. Significant differences in chemical composition of the OM samples were...

  14. Explaining the apparent resiliency of loblolly pine plantation to organic matter removal

    Treesearch

    Jeff A. Hatten; Eric B. Surce; Zakiya Leggett; Jason Mack; Scott D. Roberts; Janet Dewey; Brian Strahm

    2015-01-01

    We utilized 15-year measurements from an organic matter manipulation experiment in a loblolly pine plantation in the Upper Coastal Plain of Alabama to examine the apparent resiliency of a loblolly pine stand to organic matter removal. Treatments included complete removal of harvest residues and forest floor (removed), doubling of harvest residues and forest floor (...

  15. Picocyanobacteria and deep-ocean fluorescent dissolved organic matter share similar optical properties

    NASA Astrophysics Data System (ADS)

    Zhao, Zhao; Gonsior, Michael; Luek, Jenna; Timko, Stephen; Ianiri, Hope; Hertkorn, Norbert; Schmitt-Kopplin, Philippe; Fang, Xiaoting; Zeng, Qinglu; Jiao, Nianzhi; Chen, Feng

    2017-05-01

    Marine chromophoric dissolved organic matter (CDOM) and its related fluorescent components (FDOM), which are widely distributed but highly photobleached in the surface ocean, are critical in regulating light attenuation in the ocean. However, the origins of marine FDOM are still under investigation. Here we show that cultured picocyanobacteria, Synechococcus and Prochlorococcus, release FDOM that closely match the typical fluorescent signals found in oceanic environments. Picocyanobacterial FDOM also shows comparable apparent fluorescent quantum yields and undergoes similar photo-degradation behaviour when compared with deep-ocean FDOM, further strengthening the similarity between them. Ultrahigh-resolution mass spectrometry (MS) and nuclear magnetic resonance spectroscopy reveal abundant nitrogen-containing compounds in Synechococcus DOM, which may originate from degradation products of the fluorescent phycobilin pigments. Given the importance of picocyanobacteria in the global carbon cycle, our results indicate that picocyanobacteria are likely to be important sources of marine autochthonous FDOM, which may accumulate in the deep ocean.

  16. Picocyanobacteria and deep-ocean fluorescent dissolved organic matter share similar optical properties

    PubMed Central

    Zhao, Zhao; Gonsior, Michael; Luek, Jenna; Timko, Stephen; Ianiri, Hope; Hertkorn, Norbert; Schmitt-Kopplin, Philippe; Fang, Xiaoting; Zeng, Qinglu; Jiao, Nianzhi; Chen, Feng

    2017-01-01

    Marine chromophoric dissolved organic matter (CDOM) and its related fluorescent components (FDOM), which are widely distributed but highly photobleached in the surface ocean, are critical in regulating light attenuation in the ocean. However, the origins of marine FDOM are still under investigation. Here we show that cultured picocyanobacteria, Synechococcus and Prochlorococcus, release FDOM that closely match the typical fluorescent signals found in oceanic environments. Picocyanobacterial FDOM also shows comparable apparent fluorescent quantum yields and undergoes similar photo-degradation behaviour when compared with deep-ocean FDOM, further strengthening the similarity between them. Ultrahigh-resolution mass spectrometry (MS) and nuclear magnetic resonance spectroscopy reveal abundant nitrogen-containing compounds in Synechococcus DOM, which may originate from degradation products of the fluorescent phycobilin pigments. Given the importance of picocyanobacteria in the global carbon cycle, our results indicate that picocyanobacteria are likely to be important sources of marine autochthonous FDOM, which may accumulate in the deep ocean. PMID:28513605

  17. The surface area of soil organic matter

    USGS Publications Warehouse

    Chiou, C.T.; Lee, J.-F.; Boyd, S.A.

    1990-01-01

    The previously reported surface area for soil organic matter (SOM) of 560-800 m2/g as determined by the ethylene glycol (EG) retention method was reexamined by the standard BET method based on nitrogen adsorption at liquid nitrogen temperature. Test samples consisted of two high organic content soils, a freeze-dried soil humic acid, and an oven-dried soil humic acid. The measured BET areas for these samples were less than 1 m2/g, except for the freeze-dried humic acid. The results suggest that surface adsorption of nonionic organic compounds by SOM is practically insignificant in comparison to uptake by partition. The discrepancy between the surface areas of SOM obtained by BET and EG methods was explained in terms of the 'free surface area' and the 'apparent surface area' associated with these measurements.The previously reported surface area for soil organic matter (SOM) of 560-800 m2/g as determined by the ethylene glycol (EG) retention method was reexamined by the standard BET method based on nitrogen adsorption at liquid nitrogen temperature. Test samples consisted of two high organic content soils, a freeze-dried soil humic acid, and an oven-dried soil humic acid. The measured BET areas for these samples were less than 1 m2/g, except for the freeze-dried humic acid. The results suggest that surface adsorption of nonionic organic compounds by SOM is practically insignificant in comparison to uptake by partition. The discrepancy between the surface areas of SOM obtained by BET and EG methods was explained in terms of the 'free surface area' and the 'apparent surface area' associated with these measurements.

  18. Rare earth elements and neodymium isotopes in sedimentary organic matter

    NASA Astrophysics Data System (ADS)

    Freslon, Nicolas; Bayon, Germain; Toucanne, Samuel; Bermell, Sylvain; Bollinger, Claire; Chéron, Sandrine; Etoubleau, Joel; Germain, Yoan; Khripounoff, Alexis; Ponzevera, Emmanuel; Rouget, Marie-Laure

    2014-09-01

    We report rare earth element (REE) and neodymium (Nd) isotope data for the organic fraction of sediments collected from various depositional environments, i.e. rivers (n = 25), estuaries (n = 18), open-ocean settings (n = 15), and cold seeps (n = 12). Sedimentary organic matter (SOM) was extracted using a mixed hydrogen peroxide/nitric acid solution (20%-H2O2-0.02 M-HNO3), after removal of carbonate and oxy-hydroxide phases with dilute hydrochloric acid (0.25 M-HCl). A series of experimental tests indicate that extraction of sedimentary organic compounds using H2O2 may be complicated occasionally by partial dissolution of sulphide minerals and residual carbonates. However, this contamination is expected to be minor for REE because measured concentrations in H2O2 leachates are about two-orders of magnitude higher than in the above mentioned phases. The mean REE concentrations determined in the H2O2 leachates for samples from rivers, estuaries, coastal seas and open-ocean settings yield relatively similar levels, with ΣREE = 109 ± 86 ppm (mean ± s; n = 58). The organic fractions leached from cold seep sediments display even higher concentration levels (285 ± 150 ppm; mean ± s; n = 12). The H2O2 leachates for most sediments exhibit remarkably similar shale-normalized REE patterns, all characterized by a mid-REE enrichment compared to the other REE. This suggests that the distribution of REE in leached sedimentary organic phases is controlled primarily by biogeochemical processes, rather than by the composition of the source from which they derive (e.g. pore, river or sea-water). The Nd isotopic compositions for organic phases leached from river sediments are very similar to those for the corresponding detrital fractions. In contrast, the SOM extracted from marine sediments display εNd values that typically range between the εNd signatures for terrestrial organic matter (inferred from the analysis of the sedimentary detrital fractions) and marine organic matter

  19. Contributions of pyrogenic materials on the accumulation of soil organic matter

    USDA-ARS?s Scientific Manuscript database

    Soil amendment of charcoal co-product (HHVdb as high as coal) from thermochemical waste biomass-to-energy conversion (slow/fast pyrolysis and gasification) has received considerable interests for both contaminated and agricultural lands. Biochar amendment not only increases soil organic carbon cont...

  20. Identification of sources and seasonal variability of organic matter in Lake Sihwa and surrounding inland creeks, South Korea.

    PubMed

    Lee, Yeonjung; Hong, Seongjin; Kim, Min-Seob; Kim, Dahae; Choi, Bo-Hyung; Hur, Jin; Khim, Jong Seong; Shin, Kyung-Hoon

    2017-06-01

    Coastal areas are subjected to significant allochthonous organic matter deposits from surrounding areas; however, limited information is available on the source and delivery of this organic matter. In this study, to assess seasonal changes in the sources of organic matter in Lake Sihwa (Korea), biodegradability, fluorescence property, and stable isotopic compositions (carbon, nitrogen, and sulfur) of the organic matter were determined. Water samples were collected from the inner lake (n = 9) and inland creeks (n = 10) in five separate events, from November 2012 to October 2013. Organic matter originating from rural, urban, and industrial areas was examined as the potential sources. The organic matter contents and biodegradability in the industrial area were the highest, whereas low concentrations and poor biodegradability of organic matter were found in the rural area, and moderate properties were observed in the urban area. In Lake Sihwa, a large concentration of total organic matter and enhanced biodegradability were observed during March and August. However, main source of organic matter differed between the sampling events. The largest contribution of organic matter, deriving from marine phytoplankton, was found in March. On the other hand, in August, the organic matter originating from the industrial area, which is characterized by high levels of heavy metals and persistent organic pollutants, was significantly increased. Our results could be useful to enhance the management of water bodies aimed at reducing the organic matter concentrations and improving the water quality of Lake Sihwa, and even that of the Yellow Sea. Copyright © 2017 Elsevier Ltd. All rights reserved.

  1. Final Technical Report: Mercury Release from Organic Matter (OM) and OM-Coated Mineral Surfaces

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nagy, Kathryn L.

    2015-08-18

    Chemical reactions between mercury, a neurotoxin, and sulfur, an essential nutrient, in the environment control to a large extent the distribution and amount of mercury available for uptake by living organisms. The largest reservoir of sulfur in soils is in living, decaying, and dissolved natural organic matter. The decaying and dissolved organic matter can also coat the surfaces of minerals in the soil. Mercury (as a divalent cation) can bind to the sulfur species in the organic matter as well as to the bare mineral surfaces, but the extent of binding and release of this mercury is not well understood.more » The goals of the research were to investigate fundamental relationships among mercury, natural organic matter, and selected minerals to better understand specifically the fate and transport of mercury in contaminated soils downstream from the Y-12 plant along East Fork Poplar Creek, Tennessee, and more generally in any contaminated soil. The research focused on (1) experiments to quantify the uptake and release of mercury from two clay minerals in the soil, kaolinite and vermiculite, in the presence and absence of dissolved organic matter; (2) release of mercury from cinnabar under oxic and anoxic conditions; (3) characterization of the forms of mercury in the soil using synchrotron X-ray absorption spectroscopic techniques; and, (4) determination of molecular forms of mercury in the presence of natural organic matter. We also leveraged funding from the National Science Foundation to (5) evaluate published approaches for determining sulfur speciation in natural organic matter by fitting X-ray Absorption Near Edge Structure (XANES) spectra obtained at the sulfur K-edge and apply optimized fitting schemes to new measurements of sulfur speciation in a suite of dissolved organic matter samples from the International Humic Substances Society. Lastly, in collaboration with researchers at the University of Colorado and the U.S. Geological Survey in Boulder

  2. High-molecular-weight organic matter in the particles of comet 67P/Churyumov-Gerasimenko.

    PubMed

    Fray, Nicolas; Bardyn, Anaïs; Cottin, Hervé; Altwegg, Kathrin; Baklouti, Donia; Briois, Christelle; Colangeli, Luigi; Engrand, Cécile; Fischer, Henning; Glasmachers, Albrecht; Grün, Eberhard; Haerendel, Gerhard; Henkel, Hartmut; Höfner, Herwig; Hornung, Klaus; Jessberger, Elmar K; Koch, Andreas; Krüger, Harald; Langevin, Yves; Lehto, Harry; Lehto, Kirsi; Le Roy, Léna; Merouane, Sihane; Modica, Paola; Orthous-Daunay, François-Régis; Paquette, John; Raulin, François; Rynö, Jouni; Schulz, Rita; Silén, Johan; Siljeström, Sandra; Steiger, Wolfgang; Stenzel, Oliver; Stephan, Thomas; Thirkell, Laurent; Thomas, Roger; Torkar, Klaus; Varmuza, Kurt; Wanczek, Karl-Peter; Zaprudin, Boris; Kissel, Jochen; Hilchenbach, Martin

    2016-10-06

    The presence of solid carbonaceous matter in cometary dust was established by the detection of elements such as carbon, hydrogen, oxygen and nitrogen in particles from comet 1P/Halley. Such matter is generally thought to have originated in the interstellar medium, but it might have formed in the solar nebula-the cloud of gas and dust that was left over after the Sun formed. This solid carbonaceous material cannot be observed from Earth, so it has eluded unambiguous characterization. Many gaseous organic molecules, however, have been observed; they come mostly from the sublimation of ices at the surface or in the subsurface of cometary nuclei. These ices could have been formed from material inherited from the interstellar medium that suffered little processing in the solar nebula. Here we report the in situ detection of solid organic matter in the dust particles emitted by comet 67P/Churyumov-Gerasimenko; the carbon in this organic material is bound in very large macromolecular compounds, analogous to the insoluble organic matter found in the carbonaceous chondrite meteorites. The organic matter in meteorites might have formed in the interstellar medium and/or the solar nebula, but was almost certainly modified in the meteorites' parent bodies. We conclude that the observed cometary carbonaceous solid matter could have the same origin as the meteoritic insoluble organic matter, but suffered less modification before and/or after being incorporated into the comet.

  3. Soil Quality of Restinga Forest: Organic Matter and Aluminum Saturation

    NASA Astrophysics Data System (ADS)

    Rodrigues Almeida Filho, Jasse; Casagrande, José Carlos; Martins Bonilha, Rodolfo; Soares, Marcio Roberto; Silva, Luiz Gabriel; Colato, Alexandre

    2013-04-01

    The restinga vegetation (sand coastal plain vegetation) consists of a mosaic of plant communities, which are defined by the characteristics of the substrates, resulting from the type and age of the depositional processes. This mosaic complex of vegetation types comprises restinga forest in advanced (high restinga) and medium regeneration stages (low restinga), each with particular differentiating vegetation characteristics. Of all ecosystems of the Atlantic Forest, restinga is the most fragile and susceptible to anthropic disturbances. The purpose of this study was evaluating the organic matter and aluminum saturation effects on soil quality index (SQI). Two locations were studied: State Park of the Serra do Mar, Picinguaba, in the city of Ubatuba (23°20' e 23°22' S / 44°48' e 44°52' W), and State Park of Cardoso Island in the city of Cananéia (25°03'05" e 25°18'18" S / 47°53'48" e 48° 05'42" W). The soil samples were collect at a depth of 0-10 cm, where concentrate 70% of vegetation root system. Was studied an additive model to evaluate soil quality index. The shallow root system development occurs due to low calcium levels, whose disability limits their development, but also can reflect on delay, restriction or even in the failure of the development vegetation. The organic matter is kept in the soil restinga ecosystem by high acidity, which reduces the decomposition of soil organic matter, which is very poor in nutrients. The base saturation, less than 10, was low due to low amounts of Na, K, Ca and Mg, indicating low nutritional reserve into the soil, due to very high rainfall and sandy texture, resulting in high saturation values for aluminum. Considering the critical threshold to 3% organic matter and for aluminum saturation to 40%, the IQS ranged from 0.95 to 0.1 as increased aluminum saturation and decreased the soil organic matter, indicating the main limitation to the growth of plants in this type of soil, when deforested.

  4. The composition and degradability of upland dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Moody, Catherine; Worrall, Fred; Clay, Gareth

    2016-04-01

    In order to assess controls on the degradability of DOM in stream water, samples of dissolved organic matter (DOM) and particulate organic matter (POM) were collected every month for a period of 24 months from an upland, peat-covered catchment in northern England. Each month the degradability of the DOM was assessed by exposing river water to light for up to 24 hours, and the change in the dissolved organic carbon (DOC) concentration in the water was measured. To provide context for the analysis of DOM and its degradability, samples of peat, vegetation, and litter were also taken from the same catchment and analysed. The organic matter samples were analysed by several methods including: elemental analysis (CHN and O), bomb calorimetry, thermogravimetric analysis, pyrolysis GC/MS, ICP-OES, stable isotope analysis (13C and 15N) and 13C solid state nuclear magnetic resonance (NMR). The water samples were analysed for pH, conductivity, absorbance at 400nm, anions, cations, particulate organic carbon (POC) and DOC concentrations. River flow conditions and meteorology were also recorded at the site and included in the analysis of the composition and degradability of DOM. The results of multiple regression models showed that the rates of DOC degradation were affected by the N-alkyl, O-alkyl, aldehyde and aromatic relative intensities, gross heat, OR and C:N. Of these, the N-alkyl relative intensity had the greatest influence, and this in turn was found to be dependent on the rainfall and soil temperature in the week before sampling.

  5. Characterizing Variability In Ohio River Natural Organic Matter

    EPA Science Inventory

    Surface water contains natural organic matter (NOM) which reacts with disinfectants creating disinfection byproducts (DBPs), some of which are USEPA regulated contaminants. Characterizing NOM can provide important insight on DBP formation and water treatment process adaptation t...

  6. Photodegradation of Pyrogenic Dissolved Organic Matter (Biochar Leachates)

    NASA Astrophysics Data System (ADS)

    Bostick, K. W.; Zimmerman, A. R.; Hatcher, P.; Mitra, S.; Wozniak, A. S.

    2017-12-01

    A large portion of soil organic matter has been suggested to be pyrogenic (e.g., charred biomass or soot). While pyrogenic organic matter has been regarded as relatively stable in the environment, significant losses of pyrogenic organic carbon can occur via degradation and solubilization. Pyrogenic dissolved organic matter (py-DOM) could be an important intermediate in global C cycling, however its geochemical fate is still unknown. In the current study, the mineralization and transformation of py-DOM were explored through a series of photodegradation experiments. A biochar prepared by pyrolyzing oak wood at 400 °C was leached for a period of 48 hours. This leachate was exposed to light simulating the irradiance and spectra of natural sunlight from 295 to 365 nm. Photodegraded leachate was subsampled during a period of 20 days and analyzed for TOC, DIC and TN. Additionally, solid phase (PPL) extracts of leachate DOM were oxidized in hot nitric acid and analyzed via HPLC for benzenepolycarboxylic acids (BPCAs). In previous studies, the proportion of aromatically condensed py-DOM (as indicated carboxyl substitution in BPCA) in biochar leachates was found to increase with parent char pyrolysis temperature. Thus, to explore the influence of py-DOM type on photodegradation, losses of C, N, and condensed aromatic C were examined in leachates of an oak biochar thermal series (pyrolyzed at 400, 525, 650 °C). The resulting rates of photo-degradative losses in py-C and condensed aromatics in these leachates can be used to estimate the stability/longevity of py-DOM in aquatic systems, potential for py-DOM export from terrestrial systems, and negative effects to aquatic ecosystems.

  7. CHARACTERIZING THE ORGANIC MATTER IN SURFACE ...

    EPA Pesticide Factsheets

    The San Juan Bay Estuary (SJBE) is located on the north coast of Puerto Rico and includes the San Juan Bay, San José Lagoon, La Torrecilla Lagoon and Piñones Lagoon, as well as the Martín Peña and the Suárez Canals. The SJBE watershed has the highest density of inhabitants and major industrial activities in Puerto Rico. As a result, the SJBE is impacted by wastewater from combined-sewer overflows, faulty sewer lines, and storm water runoff; these factors combined with trash accumulation and infilling of the Martín Peña canal, contribute to decreased tidal exchange and reduced flushing in the estuary. To quantify the impact of the obstruction of the Martín Peña canal on anthropogenic nutrient distribution in the SJBE, over 200 sediment grab samples were collected throughout the estuary in 2015. The samples were analyzed for carbonate content, organic matter, grain size, bulk density, percent phosphorus, percent nitrogen (%N), and stable isotopes (δ15N and δ13C). The %N values were highest in the surface sediments from the western portion of the Martín Peña canal, where %N was >0.86%. In contrast, %N from the adjacent San José lagoon averaged <0.2%. Grain size distributions across the SJBE were consistent with low flushing in the inner portions of the SJBE. While the Martín Peña canal remains phosphorus limited, N:P ratios suggest the San Juna Bay and San José Lagoon have undergone major ecological shifts in the past two decades. Our

  8. Molecular fractionation of dissolved organic matter with metal salts.

    PubMed

    Riedel, Thomas; Biester, Harald; Dittmar, Thorsten

    2012-04-17

    Coagulation of dissolved organic matter (DOM) by hydrolyzing metals is an important environmental process with particular relevance, e.g., for the cycling of organic matter in metal-rich aquatic systems or the flocculation of organic matter in wastewater treatment plants. Often, a nonremovable fraction of DOM remains in solution even at low DOM/metal ratios. Because coagulation by metals results from interactions with functional groups, we hypothesize that noncoagulating fractions have a distinct molecular composition. To test the hypothesis, we analyzed peat-derived dissolved organic matter remaining in solution after mixing with salts of Ca, Al, and Fe using 15 T Electrospray Ionization Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry (ESI-FT-ICR-MS). Addition of metals resulted in a net removal of DOM. Also a reduction of molecular diversity was observed, as the number of peaks from the ESI-FT-ICR-MS spectra decreased. At DOM/metal ratios of ∼9 Ca did not show any preference for distinct molecular fractions, while Fe and Al removed preferentially the most oxidized compounds (O/C ratio >0.4) of the peat leachate. Lowering DOM/metal ratios to ∼1 resulted in further removal of less oxidized as well as more aromatic compounds ("black carbon"). Molecular composition in the residual solution after coagulation was more saturated, less polar, and less oxidized compared to the original peat leachate and exhibited a surprising similarity with DOM of marine origin. By identifying more than 9200 molecular formulas we can show that structural properties (saturation and aromaticity) and oxygen content of individual DOM molecules play an important role in coagulation with metals. We conclude that polyvalent cations not only alter the net mobility but also the very molecular composition of DOM in aquatic environments.

  9. Enhanced decomposition offsets enhanced productivity and soil carbon accumulation in coastal wetlands responding to climate change

    USGS Publications Warehouse

    Kirwan, M.L.; Blum, L.K.

    2011-01-01

    Coastal wetlands are responsible for about half of all carbon burial in oceans, and their persistence as a valuable ecosystem depends largely on the ability to accumulate organic material at rates equivalent to relative sea level rise. Recent work suggests that elevated CO2 and temperature warming will increase organic matter productivity and the ability of marshes to survive sea level rise. However, we find that organic decomposition rates increase by about 12% per degree of warming. Our measured temperature sensitivity is similar to studies from terrestrial systems, twice as high as the response of salt marsh productivity to temperature warming, and roughly equivalent to the productivity response associated with elevated CO2 in C3 marsh plants. Therefore, enhanced CO2 and warmer temperatures may actually make marshes less resilient to sea level rise, and tend to promote a release of soil carbon. Simple projections indicate that elevated temperatures will increase rates of sea level rise more than any acceleration in organic matter accumulation, suggesting the possibility of a positive feedback between climate, sea level rise, and carbon emissions in coastal environments.

  10. Molecular weight distribution of organic matter by ozonation and biofiltration.

    PubMed

    Lin, Yen-Hui

    2012-01-01

    Molecular weight (MW) distribution of organic matter by ozonation and biofiltration was evaluated using gel chromatography. The MW distribution of organic matter by Sephadex G-25 was observed from groups 2 (MW = 1,029-7,031 g/mol) and 3 (MW = 303-1,029 g/mol) shifted to groups 2, 3 and 4 (MW < 303 g/mol) under ozone doses of 0.1 and 0.4 mg O₃/mg total organic carbon (TOC). The shift in MW increases as ozone dosage increases. Biofiltration effectively degraded the organic molecule of group 2; however, the biofiltration only slightly degraded the organic molecule of group 4. Increased ozone dose destroyed functional groups C═C in phenolic and C-O in alcoholic compounds and increased UV-insensitive biodegradable organic carbon for subsequent biofiltration. Biofiltration effectively degraded organic compounds of alcohols and alkenes at an ozone dose of 0.1 mg O₃/mg TOC. Experimental approaches in this study can be applied to evaluate and diagnose the function of a full-scale process combining ozonation and biofiltration in drinking water treatment plants.

  11. Surface accumulation of low molecular weight dissolved organic matter in surface waters and horizontal off-shelf spreading of nutrients and humic-like fluorescence in the Chukchi Sea of the Arctic Ocean.

    PubMed

    Chen, Meilian; Jung, Jinyoung; Lee, Yun Kyung; Hur, Jin

    2018-05-23

    Polar regions play unique roles in global overturning circulation, carbon cycling, and climate change. In this study, seawater dissolved organic matter (DOM) was characterized for the Chukchi Sea in the Arctic Ocean in the summer season. The seawater generally contains high concentrations of dissolved organic carbon (DOC, up to 92 μM C) and tyrosine-like fluorescence (up to 0.21 RU), and it was enriched with heteroatomic molecular formula with nitrogen-containing and sulfur-containing formulas counting 2246 (~41% of total identified molecular formula) and 1838 (~34%), respectively. Significant correlations were observed between salinity and the absorption coefficient at 254 nm, between chlorophyll-a and DOC as well as the tyrosine-like component, C 270/302 (C ex/em maxima), and between biological index and two protein-like components, C 275/338 and C 305/344 . A comparison between surface waters and close-to-seafloor deep waters suggested a trend of the accumulation of low molecular weight (LMW) fraction (~54-74%, nominal average molecular weight M n  < ~350 Da) in the surface waters. Another interesting finding from spatial data was an obvious horizontal off-shelf spreading of nutrients and humic-like fluorescence. This study sheds novel insights of DOM characteristics and dynamics in the highly productive polar sea. Copyright © 2018 Elsevier B.V. All rights reserved.

  12. Characterisation of the biodegradability of post-treated digestates via the chemical accessibility and complexity of organic matter.

    PubMed

    Maynaud, Géraldine; Druilhe, Céline; Daumoin, Mylène; Jimenez, Julie; Patureau, Dominique; Torrijos, Michel; Pourcher, Anne-Marie; Wéry, Nathalie

    2017-05-01

    The stability of digestate organic matter is a key parameter for its use in agriculture. Here, the organic matter stability was compared between 14 post-treated digestates and the relationship between organic matter complexity and biodegradability was highlighted. Respirometric activity and CH 4 yields in batch tests showed a positive linear correlation between both types of biodegradability (R 2 =0.8). The accessibility and complexity of organic matter were assessed using chemical extractions combined with fluorescence spectroscopy, and biodegradability was mostly anti-correlated with complexity of organic matter. Post-treatments presented a significant effect on the biodegradability and complexity of organic matter. Biodegradability was low for composted digestates which comprised slowly accessible complex molecules. Inversely, solid fractions obtained after phase separation contained a substantial part of remaining biodegradable organic matter with a significant easily accessible fraction comprising simpler molecules. Understanding the effect of post-treatment on the biodegradability of digestates should help to optimize their valorization. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Organic matter sources and rehabilitation of the Sacramento-San Joaquin Delta (California, USA)

    USGS Publications Warehouse

    Jassby, A.D.; Cloern, J.E.

    2000-01-01

    1. The Sacramento San Joaquin River Delta, a complex mosaic of tidal freshwater habitats in California, is the focus of a major ecosystem rehabilitation effort because of significant long-term changes in critical ecosystem functions. One of these functions is the production, transport and transformation of organic matter that constitutes the primary food supply, which may be sub-optimal at trophic levels supporting fish recruitment. A long historical data set is used to define the most important organic matter sources, the factors underlying their variability, and the implications of ecosystem rehabilitation actions for these sources. 2. Tributary-borne loading is the largest organic carbon source on an average annual Delta-wide basis; phytoplankton production and agricultural drainage are secondary; wastewater treatment plant discharge, tidal marsh drainage and possibly aquatic macrophyte production are tertiary; and benthic microalgal production, urban run-off and other sources are negligible. 3. Allochthonous dissolved organic carbon must be converted to particulate form - with losses due to hydraulic flushing and to heterotroph growth inefficiency - before it becomes available to the metazoan food web. When these losses are accounted for, phytoplankton production plays a much larger role than is evident from a simple accounting of bulk organic carbon sources, especially in seasons critical for larval development and recruitment success. Phytoplankton-derived organic matter is also an important component of particulate loading to the Delta. 4. The Delta is a net producer of organic matter in critically dry years but, because of water diversion from the Delta, transport of organic matter from the Delta to important, downstream nursery areas in San Francisco Bay is always less than transport into the Delta from upstream sources. 5. Of proposed rehabilitation measures, increased use of floodplains probably offers the biggest increase in organic matter sources. 6

  14. Optimization of soluble organic selenium accumulation during fermentation of Flammulina velutipes mycelia.

    PubMed

    Ma, Yunfeng; Xiang, Fu; Xiang, Jun; Yu, Longjiang

    2012-01-01

    Selenium is an essential nutrient with diverse physiological functions, and soluble organic selenium (SOS) sources have a higher bioavailability than inorganic selenium sources. Based on the response surface methodology and central composite design, this study presents the optimal medium components for SOS accumulation in batch cultures of Flammulina velutipes, i.e. 30 g/L glucose, 11.2 mg/L sodium selenite, and 1.85 g/L NH4NO3. Furthermore, logistic function model feeding was found to be the optimal feeding strategy for SOS accumulation during Flammulina velutipes mycelia fermentation, where the maximum SOS accumulation reached (4.63 +/- 0.24) mg/L, which is consistent with the predicted value.

  15. Organic matter chlorination rates in different boreal soils: the role of soil organic matter content.

    PubMed

    Gustavsson, Malin; Karlsson, Susanne; Oberg, Gunilla; Sandén, Per; Svensson, Teresia; Valinia, Salar; Thiry, Yves; Bastviken, David

    2012-02-07

    Transformation of chloride (Cl(-)) to organic chlorine (Cl(org)) occurs naturally in soil but it is poorly understood how and why transformation rates vary among environments. There are still few measurements of chlorination rates in soils, even though formation of Cl(org) has been known for two decades. In the present study, we compare organic matter (OM) chlorination rates, measured by (36)Cl tracer experiments, in soils from eleven different locations (coniferous forest soils, pasture soils and agricultural soils) and discuss how various environmental factors effect chlorination. Chlorination rates were highest in the forest soils and strong correlations were seen with environmental variables such as soil OM content and Cl(-) concentration. Data presented support the hypothesis that OM levels give the framework for the soil chlorine cycling and that chlorination in more organic soils over time leads to a larger Cl(org) pool and in turn to a high internal supply of Cl(-) upon dechlorination. This provides unexpected indications that pore water Cl(-) levels may be controlled by supply from dechlorination processes and can explain why soil Cl(-) locally can be more closely related to soil OM content and the amount organically bound chlorine than to Cl(-) deposition.

  16. Effects of molecular weight of natural organic matter on cadmium mobility in soil environments and its carbon isotope characteristics.

    PubMed

    Mahara, Y; Kubota, T; Wakayama, R; Nakano-Ohta, T; Nakamura, T

    2007-11-15

    We investigated the role of natural organic matter in cadmium mobility in soil environments. We collected the dissolved organic matter from two different types of natural waters: pond surface water, which is oxic, and deep anoxic groundwater. The collected organic matter was fractionated into four groups with molecular weights (unit: Da (Daltons)) of <1 x 10(3), 1-10 x 10(3), 10-100 x 10(3), and >100 x 10(3). The organic matter source was land plants, based on the carbon isotope ratios (delta(13)C/(12)C). The organic matter in surface water originated from presently growing land plants, based on (14)C dating, but the organic matter in deep groundwater originated from land plants that grew approximately 4000 years ago. However, some carbon was supplied by the high-molecular-weight fraction of humic substances in soil or sediments. Cadmium interacted in a system of siliceous sand, fractionated organic matter, and water. The lowest molecular weight fraction of organic matter (<1 x 10(3)) bound more cadmium than did the higher molecular weight fractions. Organic matter in deep groundwater was more strongly bound to cadmium than was organic matter in surface water. The binding behaviours of organic matter with cadmium depended on concentration, age, molecular weight, and degradation conditions of the organic matter in natural waters. Consequently, the dissolved, low-molecular-weight fraction in organic matter strongly influences cadmium migration and mobility in the environment.

  17. Role of Organic Matter in the Removal of Heavy Metals in Stormwater Runoff

    NASA Astrophysics Data System (ADS)

    Barrett, M.; Ingenloff, C.; Katz, L.

    2011-12-01

    Heavy metals (copper, zinc, and lead) are common constituents in highway runoff and concentrations in runoff from highway facilities are particularly high. These concentrations are also generally higher than observed in natural water bodies and several studies have demonstrated acute and chronic toxicity to aquatic ecosystems. One focus of this project is to assess the potential of sorption to reduce the concentration of metals in runoff. The difficulty evaluating adsorption in multi-component systems is to capture the impacts of background organic matter and other complexing ions on adsorption behavior. Very few studies have evaluated the ability of surface complexation models to predict adsorption in systems that contain organic matter from highway runoff. Moreover, the composition of the organic matter in stormwater runoff can be significantly different from natural organic matter typically used to assess the impact of background organics on metal ion adsorption. This research project specifically addresses these concerns and examines the impact of highway runoff on the adsorption behavior to determine whether existing surface complexation and chemical speciation models and parameter databases can be used to predict adsorption of target metal ions in these waters. Previous research has employed both actual storm water that has been obtained from actual field highway runoff sites as well as synthetic storm water compositions that have attempted to mimic the major components of natural storm water. Researchers and practitioners in the field generally agree on the importance of capturing the background water matrix; however, concerns associated with required volumes, holding times, aging, consistency and temporal and spatial variability often favor the use of synthetic formulations. While synthetic storm water can achieve the required consistency, numerous artifacts can be introduced due to the high reactivity of trace metal ions with background inorganic and

  18. Pleistocene to Holocene contrasts in organic matter production and preservation on the California continental margin

    USGS Publications Warehouse

    Dean, W.E.; Gardner, J.V.

    1998-01-01

    Organic matter in sediments from cores collected from the upper continental slope (200-2700 m) off California and southern Oregon shows marked differences in concentration and marine character between the last glacial interval (ca. 24-10 ka) and either Holocene time or last interstadial (oxygen isotope stage 3, ca. 60-24 ka). In general, sediments deposited during Holocene time and stage 3 contain higher amounts of marine organic matter than those deposited during the last glacial interval, and this contrast is greatest in cores collected off southern California. The most profound differences in stage 3 sediments are between predominantly bioturbated sediments and occasional interbeds of laminated sediments. The sediments are from cores collected within the present oxygen minimum zone on the upper continental slope from as far north as the Oregon-California border to as far south as Point Conception. These upper Pleistocene laminated sediments contain more abundant hydrogen-rich (type II) marine algal organic matter than even surface sediments that have large amounts of nonrefractory organic matter. The stable carbon-isotopic composition of the organic matter does not change with time between bioturbated and laminated sediments, indicating that the greater abundance of type II organic matter in the laminated sediments is not due to a change in source but rather represents a greater degree of production and preservation of marine organic matter. The presence of abundant, well-preserved organic matter supports the theory that the oxygen minimum zone in the northeastern Pacific Ocean was more intense, and possibly anoxic, during late Pleistocene time as a result of increased coastal upwelling that enhanced algal productivity.

  19. Organic and Inorganic Matter in Louisiana Coastal Waters: Vermilion, Atchafalaya, Terrebonne, Barataria, and Mississippi Regions.

    EPA Science Inventory

    Chromophoric dissolved organic matter (CDOM) spectral absorption, dissolved organic carbon (DOC) concentration, and the particulate fraction of inorganic (PIM) and organic matter (POM) were measured in Louisiana coastal waters at Vermilion, Atchafalaya, Terrebonne, Barataria, and...

  20. Effects of different forms of plant-derived organic matter on nitrous oxide emissions.

    PubMed

    Qiu, Qingyan; Wu, Lanfang; Ouyang, Zhu; Li, Binbin; Xu, Yanyan

    2016-07-13

    To investigate the impact of different forms of plant-derived organic matter on nitrous oxide (N2O) emissions, an incubation experiment with the same rate of total nitrogen (N) application was carried out at 25 °C for 250 days. Soils were incorporated with maize-derived organic matter (i.e., maize residue-derived dissolved organic matter and maize residues with different C/N ratios) and an inorganic N fertilizer (urea). The pattern and magnitude of nitrous oxide (N2O) emissions were affected by the form of N applied. Single application of maize-derived organic matter resulted in a higher N2O emission than single application of the inorganic N fertilizer or combined application of the inorganic N fertilizer and maize-derived organic matter. The positive effect of maize residue-derived dissolved organic matter (DOM) addition on N2O emissions was relatively short-lived and mainly occurred at the early stage following DOM addition. In contrast, the positive effect induced by maize residue addition was more pronounced and lasted for a longer period. Single application of maize residues resulted in a substantial decrease in soil nitric nitrogen (NO3(-)-N), but it did not affect the production of N2O. No significant relationship between N2O emission and NO3(-)-N and ammonium nitrogen (NH4(+)-N) suggested that the availability of soil N was not limiting the production of N2O in our study. The key factors affecting soil N2O emission were the soil dissolved organic carbon (DOC) content and metabolism quotient (qCO2). Both of them could explain 87% of the variation in cumulative N2O emission. The C/N ratio of maize-derived organic matter was a poor predictor of N2O emission when the soil was not limited by easily available C and the available N content met the microbial N demands for nitrification and denitrification. The results suggested that the magnitude of N2O emission was determined by the impact of organic amendments on soil C availability and microbial activity

  1. Is organic matter alone sufficient to predict isoproturon sorption in calcareous soils?

    PubMed

    El Arfaoui, Achouak; Sayen, Stéphanie; Paris, Michaël; Keziou, Amor; Couderchet, Michel; Guillon, Emmanuel

    2012-08-15

    Eleven soils collected from Champagne-Ardenne area (France) were used to investigate isoproturon sorption in laboratory conditions. Our results identified the organic matter (OM) and the ratio of calcite content to OM content (Rt) as the main two parameters governing isoproturon retention in soils. While organic matter favored pesticide sorption, calcite had an antagonistic effect since it limited isoproturon retention. The Rt ratio of calcite content to organic matter content in soils appeared to be a parameter that should be considered in predictive models in addition to OM in regions presenting calcareous soils. Adsorption of isoproturon as a function of Rt and OM was successfully described through a simple empirical model. Copyright © 2012 Elsevier B.V. All rights reserved.

  2. Characterization of dissolved organic matter in an urbanized estuary located in Northeastern Brazil.

    PubMed

    Arguelho, Maria de Lara Palmeira de Macedo; Alves, José do Patrocínio Hora; Monteiro, Adnívia Santos Costa; Garcia, Carlos Alexandre Borges

    2017-06-01

    The Sal River estuary, which is located in the state of Sergipe, Northeastern Brazil, stands out as an urban estuary, anthropogenically impacted by untreated and treated wastewater discharge. Synchronous fluorescence spectroscopy and measurement of dissolved organic carbon (DOC) were used for characterization of dissolved organic matter (DOM) in the estuarine water. Dissolved organic carbon concentrations ranged from 7.5 to 19.0 mg L -1 and, in general, the highest values were recorded during dry season. For both seasons (dry and rainy), DOC presented an inverse linear relationship with salinity, which indicates a conservative dilution of organic matter coming into the estuary. During rainy season, anthropogenic organic constituents and humic substances from land-based sources predominated in DOM composition, carried by river flow. Whereas during the dry season, it has been observed a significant increase of products generated by microbial degradation of anthropogenic organic matter. The relationships between fluorescence intensity and salinity suggest a conservative behavior during rainy season and a non-conservative behavior during dry season, with addition of fluorescent organic matter into the intermediate zone of the estuary. Photodegradation by action of sunlight caused a decrease in fluorescence intensity of humic and tryptophan-like constituents and the release of photoproducts, resulting in an increase in fluorescence intensity of protein-like constituents.

  3. Peer reviewed: Characterizing aquatic dissolved organic matter

    USGS Publications Warehouse

    Leenheer, Jerry A.; Croué, Jean-Philippe

    2003-01-01

    Whether it causes aesthetic concerns such as color, taste, and odor; leads to the binding and transport of organic and inorganic contaminants; produces undesirable disinfection byproducts; provides sources and sinks for carbon; or mediates photochemical processes, the nature and properties of dissolved organic matter (DOM) in water are topics of significant environmental interest. DOM is also a major reactant in and product of biogeochemical processes in which the material serves as a carbon and energy source for biota and controls levels of dissolved oxygen, nitrogen, phosphorus, sulfur, numerous trace metals, and acidity.

  4. Photoproduction of Carbon Monoxide from Natural Organic Matter

    EPA Science Inventory

    Pioneering studies by Valentine provided early kinetic results that used carbon monoxide (CO) production to evaluate the photodecomposition of aquatic natural organic matter (NOM) . (ES&T 1993 27 409-412). Comparatively few kinetic studies have been conducted of the photodegradat...

  5. Isotopic analysis of cometary organic matter

    NASA Technical Reports Server (NTRS)

    Kerridge, John F.

    1991-01-01

    Carbon isotope ratios have been measured for CN in the coma of Comet Halley and for several CHON particles emitted by Halley. Of these, only the CHON-particle data may be reasonably related to organic matter in the cometary nucleus, but the true range of (C-13)/(C-12) values in those particles is quite uncertain. The D/H ratio in H2O in the Halley coma resembles that in Titan/Uranus.

  6. Accumulation of deaminated peptides in anoxic sediments of Santa Barbara Basin

    NASA Astrophysics Data System (ADS)

    Abdulla, Hussain A.; Burdige, David J.; Komada, Tomoko

    2018-02-01

    Proteins represent the most abundant class of biomolecules in marine sinking particles and microbial biomass, yet their cycling in marine sediments is not fully understood. To investigate whether some portion of hydrolyzed proteins escapes complete remineralization and accumulate in the pore waters, we analyzed dissolved organic matter from the anoxic sediments of Santa Barbara Basin, California, by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR-MS). The results showed an increase in the molecular diversity and abundance of dissolved organic nitrogen (DON) formulas with depth. A comparison of the detected DON formulas to a database of small peptides (2-4 amino acid sequences) returned 119 matches, and these formulas were most abundant near the sediment surface. When we compared our detected formulas to all possible structures that would result from deamination of peptides in the database, we found 680 formula matches. However, these molecular formulas can represent hundreds of different structural isomers (in the present case as many as 3257 different deaminated peptide structures), which cannot be distinguished by the FTICR-MS settings that were used. Analysis of amino acid sequences suggests that these deaminated peptides may be the products of selective degradation of source proteins in marine sediments. We hypothesize that these deaminated peptides accumulate in the pore waters due to extracellular proteinases being inhibited from completely hydrolyzing specific peptides to free amino acids. We suggest that anaerobic microbes deaminate peptides largely to produce H2, which is ultimately used as a reducing agent by other sediment microbes (e.g. CO2 reduction by methanogens). Simple calculations suggest that deaminated peptides may represent ∼25-45% of DOC accumulating in these sediment pore waters. Unlike rapid remineralization of free amino acids, peptide deamination leaves behind the peptide carbon skeleton. Molecular structures of these

  7. Physiological characteristics, dry matter, and active component accumulation patterns of Changium smyrnioides in response to a light intensity gradient.

    PubMed

    Wang, Chang-Lin; Guo, Qiao-Sheng; Zhu, Zai-Biao; Cheng, Bo-Xing

    2017-12-01

    Changium smyrnioides Wolff (Apiaceae) is an endangered medicinal plant with numerous pharmacological uses. To investigate the effect of light intensity levels on the growth and accumulation of secondary metabolites of C. smyrnioides, cultivated seedlings were subjected to different relative light intensities via sun-shading. Changium smyrnioides seedlings were subjected to five irradiance treatments (100, 60.54, 44.84, 31.39, and 10.56% sunlight) in glasshouse for 9 months. Enzymatic and non-enzymatic antioxidants with spectrophotometric method, photosynthetic parameters with Li-6400XT, dry matter accumulation and active component contents in the root with spectrophotometric and HPLC method were analyzed. With an increase in relative light intensity levels, activities of enzymatic and non-enzymatic antioxidants, and malondialdehyde (MDA) contents were increased overall, while net photosynthetic rate (P n ) and dry matter accumulation patter first increased and then declined. The highest net photosynthetic rate (30.68 μmol/m 2 ·s) and dry root weight (5.07 g) were achieved under 60.54% sunlight. Lower relative light intensity levels stimulated the accumulation levels of bioactive compounds in the roots so that the highest contents of mannitol (1.35%) and choline (405.58 μg/g) were recorded under 31.39% sunlight, and the highest polysaccharide content (10.80%) were achieved under 44.84% sunlight. With a decrease in the relative light intensity levels, the water-soluble component content increased first and then decreased. The results revealed that 31.39-60.54% sunlight serve as appropriate relative light intensity conditions for cultivated C. smyrnioides.

  8. Photodissolution of soil organic matter

    USGS Publications Warehouse

    Mayer, L.M.; Thornton, K.R.; Schick, L.L.; Jastrow, J.D.; Harden, J.W.

    2012-01-01

    Sunlight has been shown to enhance loss of organic matter from aquatic sediments and terrestrial plant litter, so we tested for similar reactions in mineral soil horizons. Losses of up to a third of particulate organic carbon occurred after continuous exposure to full-strength sunlight for dozens of hours, with similar amounts appearing as photodissolved organic carbon. Nitrogen dissolved similarly, appearing partly as ammonium. Modified experiments with interruption of irradiation to include extended dark incubation periods increased loss of total organic carbon, implying remineralization by some combination of light and microbes. These photodissolution reactions respond strongly to water content, with reaction extent under air-dry to fully wet conditions increasing by a factor of 3-4 fold. Light limitation was explored using lamp intensity and soil depth experiments. Reaction extent varied linearly with lamp intensity. Depth experiments indicate that attenuation of reaction occurs within the top tens to hundreds of micrometers of soil depth. Our data allow only order-of-magnitude extrapolations to field conditions, but suggest that this type of reaction could induce loss of 10-20% of soil organic carbon in the top 10. cm horizon over a century. It may therefore have contributed to historical losses of soil carbon via agriculture, and should be considered in soil management on similar time scales. ?? 2011 Elsevier B.V.

  9. Quality of fresh organic matter affects priming of soil organic matter and substrate utilization patterns of microbes

    PubMed Central

    Wang, Hui; Boutton, Thomas W.; Xu, Wenhua; Hu, Guoqing; Jiang, Ping; Bai, Edith

    2015-01-01

    Changes in biogeochemical cycles and the climate system due to human activities are expected to change the quantity and quality of plant litter inputs to soils. How changing quality of fresh organic matter (FOM) might influence the priming effect (PE) on soil organic matter (SOM) mineralization is still under debate. Here we determined the PE induced by two 13C-labeled FOMs with contrasting nutritional quality (leaf vs. stalk of Zea mays L.). Soils from two different forest types yielded consistent results: soils amended with leaf tissue switched faster from negative PE to positive PE due to greater microbial growth compared to soils amended with stalks. However, after 16 d of incubation, soils amended with stalks had a higher PE than those amended with leaf. Phospholipid fatty acid (PLFA) results suggested that microbial demand for carbon and other nutrients was one of the major determinants of the PE observed. Therefore, consideration of both microbial demands for nutrients and FOM supply simultaneously is essential to understand the underlying mechanisms of PE. Our study provided evidence that changes in FOM quality could affect microbial utilization of substrate and PE on SOM mineralization, which may exacerbate global warming problems under future climate change. PMID:25960162

  10. Quality of fresh organic matter affects priming of soil organic matter and substrate utilization patterns of microbes.

    PubMed

    Wang, Hui; Boutton, Thomas W; Xu, Wenhua; Hu, Guoqing; Jiang, Ping; Bai, Edith

    2015-05-11

    Changes in biogeochemical cycles and the climate system due to human activities are expected to change the quantity and quality of plant litter inputs to soils. How changing quality of fresh organic matter (FOM) might influence the priming effect (PE) on soil organic matter (SOM) mineralization is still under debate. Here we determined the PE induced by two (13)C-labeled FOMs with contrasting nutritional quality (leaf vs. stalk of Zea mays L.). Soils from two different forest types yielded consistent results: soils amended with leaf tissue switched faster from negative PE to positive PE due to greater microbial growth compared to soils amended with stalks. However, after 16 d of incubation, soils amended with stalks had a higher PE than those amended with leaf. Phospholipid fatty acid (PLFA) results suggested that microbial demand for carbon and other nutrients was one of the major determinants of the PE observed. Therefore, consideration of both microbial demands for nutrients and FOM supply simultaneously is essential to understand the underlying mechanisms of PE. Our study provided evidence that changes in FOM quality could affect microbial utilization of substrate and PE on SOM mineralization, which may exacerbate global warming problems under future climate change.

  11. Quality of fresh organic matter affects priming of soil organic matter and substrate utilization patterns of microbes

    NASA Astrophysics Data System (ADS)

    Wang, Hui; Boutton, Thomas W.; Xu, Wenhua; Hu, Guoqing; Jiang, Ping; Bai, Edith

    2015-05-01

    Changes in biogeochemical cycles and the climate system due to human activities are expected to change the quantity and quality of plant litter inputs to soils. How changing quality of fresh organic matter (FOM) might influence the priming effect (PE) on soil organic matter (SOM) mineralization is still under debate. Here we determined the PE induced by two 13C-labeled FOMs with contrasting nutritional quality (leaf vs. stalk of Zea mays L.). Soils from two different forest types yielded consistent results: soils amended with leaf tissue switched faster from negative PE to positive PE due to greater microbial growth compared to soils amended with stalks. However, after 16 d of incubation, soils amended with stalks had a higher PE than those amended with leaf. Phospholipid fatty acid (PLFA) results suggested that microbial demand for carbon and other nutrients was one of the major determinants of the PE observed. Therefore, consideration of both microbial demands for nutrients and FOM supply simultaneously is essential to understand the underlying mechanisms of PE. Our study provided evidence that changes in FOM quality could affect microbial utilization of substrate and PE on SOM mineralization, which may exacerbate global warming problems under future climate change.

  12. PHOTOCHEMICAL TRANSFORMATIONS OF DISSOLVED ORGANIC MATTER IN A BLACKWATER RIVER

    EPA Science Inventory

    We examined photochemical alterations of dissolved organic matter (DOM) from the Satilla River, a high DOC (10-40 mg/liter) blackwater river of southeast Georgia. Water samples were filtered to remove most organisms, placed in quartz tubes, and incubated under natural sunlight a...

  13. CHROMOPHORIC DISSOLVED ORGANIC MATTER (CDOM) DERIVED FROM DECOMPOSITION OF VARIOUS VASCULAR PLANT AND ALGAL SOURCES

    EPA Science Inventory

    Chromophoric dissolved organic (CDOM) in aquatic environments is derived from the microbial decomposition of terrestrial and microbial organic matter. Here we present results of studies of the spectral properties and photoreactivity of the CDOM derived from several organic matter...

  14. Effect of organic matters on CO2 hydrate phase equilibrium conditions in Na-montmorillonite clay

    NASA Astrophysics Data System (ADS)

    Park, T.; Kyung, D.; Lee, W.

    2013-12-01

    Formation of gas hydrates provides an attractive idea for storing greenhouse gases in a long-term stable geological formation. Since the phase equilibrium conditions of gas hydrates indicate the stability of hydrates, estimation of the phase equilibrium conditions of gas hydrates in marine geological conditions is necessary. In this study, we have identified the effects of organic matters (glycine, glucose, and urea) and solid surface (montmorillonite (MMT)) on the three-phase (liquid-hydrate-vapor) equilibrium conditions of CO2 hydrate. CO2 phase equilibrium experiments were conducted using 0.5mol% organic matter solutions with and without 10g soil mineral were experimentally conducted. Addition of organic matters shifted the phase equilibrium conditions of CO2 hydrate to the higher pressure or lower pressure region because of higher competition of water molecules due to the dissolved organic matters. Presence of MMT also leaded to the higher equilibrium pressure due to the interaction of cations with water molecules. By addition of organic matters to the clay suspension, the hydrate phase equilibrium conditions were less inhibited compared to those of MMT and organic matters independently. The diminished magnitudes by addition of organic matters to the clay suspension (MMT > MMT+urea > MMT+glycine > MMT+glucose > DIW) were different to the order of inhibition degree without MMT (Glucose > glycine > urea > DIW). X-ray diffraction (XRD), scanning electron microscope (SEM), and ion chromatography (IC) analysis were conducted to support the hypothesis that the organic matters interact with cations in MMT interlayer space, and leads to the less inhibition of phase equilibrium conditions. The present study provides basic information for the formation and dissociation of CO2 hydrates in the geological formation when sequestering CO2 as a form of CO2 hydrate.

  15. Input related microbial carbon dynamic of soil organic matter in particle size fractions

    NASA Astrophysics Data System (ADS)

    Gude, A.; Kandeler, E.; Gleixner, G.

    2012-04-01

    This paper investigated the flow of carbon into different groups of soil microorganisms isolated from different particle size fractions. Two agricultural sites of contrasting organic matter input were compared. Both soils had been submitted to vegetation change from C3 (Rye/Wheat) to C4 (Maize) plants, 25 and 45 years ago. Soil carbon was separated into one fast-degrading particulate organic matter fraction (POM) and one slow-degrading organo-mineral fraction (OMF). The structure of the soil microbial community were investigated using phospholipid fatty acids (PLFA), and turnover of single PLFAs was calculated from the changes in their 13C content. Soil enzyme activities involved in the degradation of carbohydrates was determined using fluorogenic MUF (methyl-umbelliferryl phosphate) substrates. We found that fresh organic matter input drives soil organic matter dynamic. Higher annual input of fresh organic matter resulted in a higher amount of fungal biomass in the POM-fraction and shorter mean residence times. Fungal activity therefore seems essential for the decomposition and incorporation of organic matter input into the soil. As a consequence, limited litter input changed especially the fungal community favouring arbuscular mycorrhizal fungi. Altogether, supply and availability of fresh plant carbon changed the distribution of microbial biomass, the microbial community structure and enzyme activities and resulted in different priming of soil organic matter. Most interestingly we found that only at low input the OMF fraction had significantly higher calculated MRT for Gram-positive and Gram-negative bacteria suggesting high recycling of soil carbon or the use of other carbon sources. But on average all microbial groups had nearly similar carbon uptake rates in all fractions and both soils, which contrasted the turnover times of bulk carbon. Hereby the microbial carbon turnover was always faster than the soil organic carbon turnover and higher carbon input

  16. Particulate Organic Matter Affects Soil Nitrogen Mineralization under Two Crop Rotation Systems

    PubMed Central

    Bu, Rongyan; Lu, Jianwei; Ren, Tao; Liu, Bo; Li, Xiaokun; Cong, Rihuan

    2015-01-01

    Changes in the quantity and/or quality of soil labile organic matter between and after different types of cultivation system could play a dominant role in soil nitrogen (N) mineralization. The quantity and quality of particulate organic matter (POM) and potentially mineralizable-N (PMN) contents were measured in soils from 16 paired rice-rapeseed (RR)/cotton-rapeseed (CR) rotations sites in Hubei province, central China. Then four paired soils encompassing low (10th percentile), intermediate (25th and 75th percentiles), and high (90th percentile) levels of soil PMN were selected to further study the effects of POM on soil N mineralization by quantifying the net N mineralization in original soils and soils from which POM was removed. Both soil POM carbon (POM-C) and N (POM-N) contents were 45.8% and 55.8% higher under the RR rotation compared to the CR rotation, respectively. The PMN contents were highly correlated with the POM contents. The PMN and microbial biomass N (MBN) contents concurrently and significantly decreased when POM was removed. The reduction rate of PMN was positively correlated with changes in MBN after the removal of POM. The reduction rates of PMN and MBN after POM removal are lower under RR rotations (38.0% and 16.3%, respectively) than CR rotations (45.6% and 19.5%, respectively). Furthermore, infrared spectroscopy indicated that compounds with low-bioavailability accumulated (e.g., aromatic recalcitrant materials) in the soil POM fraction under the RR rotation but not under the CR rotation. The results of the present study demonstrated that POM plays a vital role in soil N mineralization under different rotation systems. The discrepancy between POM content and composition resulting from different crop rotation systems caused differences in N mineralization in soils. PMID:26647157

  17. Particulate Organic Matter Affects Soil Nitrogen Mineralization under Two Crop Rotation Systems.

    PubMed

    Bu, Rongyan; Lu, Jianwei; Ren, Tao; Liu, Bo; Li, Xiaokun; Cong, Rihuan

    2015-01-01

    Changes in the quantity and/or quality of soil labile organic matter between and after different types of cultivation system could play a dominant role in soil nitrogen (N) mineralization. The quantity and quality of particulate organic matter (POM) and potentially mineralizable-N (PMN) contents were measured in soils from 16 paired rice-rapeseed (RR)/cotton-rapeseed (CR) rotations sites in Hubei province, central China. Then four paired soils encompassing low (10th percentile), intermediate (25th and 75th percentiles), and high (90th percentile) levels of soil PMN were selected to further study the effects of POM on soil N mineralization by quantifying the net N mineralization in original soils and soils from which POM was removed. Both soil POM carbon (POM-C) and N (POM-N) contents were 45.8% and 55.8% higher under the RR rotation compared to the CR rotation, respectively. The PMN contents were highly correlated with the POM contents. The PMN and microbial biomass N (MBN) contents concurrently and significantly decreased when POM was removed. The reduction rate of PMN was positively correlated with changes in MBN after the removal of POM. The reduction rates of PMN and MBN after POM removal are lower under RR rotations (38.0% and 16.3%, respectively) than CR rotations (45.6% and 19.5%, respectively). Furthermore, infrared spectroscopy indicated that compounds with low-bioavailability accumulated (e.g., aromatic recalcitrant materials) in the soil POM fraction under the RR rotation but not under the CR rotation. The results of the present study demonstrated that POM plays a vital role in soil N mineralization under different rotation systems. The discrepancy between POM content and composition resulting from different crop rotation systems caused differences in N mineralization in soils.

  18. Effect of different kinds of crop residues on aggregate-protected soil organic matter fractions.

    NASA Astrophysics Data System (ADS)

    Huisz, A.

    2009-04-01

    Organic matter content of soils determines many important soil properties, such as soil structure, fertility and water-management. To improve its fertility and quality, returning different kinds of organic matter to soil has a long historical tradition. Ameliorating of soil and enhancing its fertility by enhancing its carbon stock with organic matter incorporation (like farmyard manure, crop residues or green manure) are general practices, but the extent of the amelioration depends much on several factors such as quantity, quality of the used organic matters. Quality of soil organic matters is affected by their chemical build-up, which differs by their origin (i.e. plant species); and their decomposability is affected by particle-size, protection by soil aggregates and the extent of their association to mineral surfaces. In our paper we investigated the effect of three different kinds of organic matter incorporation on aggregate-protected organic matter fractions: (1) Maize stem (M), (2) Wheat straw (W), and (3) Maize stem & Wheat straw (MW). Our samples were originated from Keszthely, Western Hungary, where the texture of the investigated soil is Sandy loam, the type of soil is Eutric Cambisol (soil type FAO), or Alfisol (soil type USDA). SOM fractions might be isolated and measured by physical fractionation of soil (Cambardella and Elliott (1992), Jensen et al. (1992)). Firstly, microaggregates were separated according to their particle-size with physical fractionation (i.e. wet sieving) (Six et al. (2000a)). Each sample was pre-treated by capillary wetting and was sieved for 2 min in an analytic sieve shaker machine with the following aperture sizes: 2 mm, 250 μm, 53 μm. Therefore 4 fractions were resulted: (1) the >2000 μm large macro-, (2) the 250-2000 μm small macro-, (3) the 53-250 μm microaggregates, and (4) the

  19. Jellyfish Lake, Palau: early diagenesis of organic matter in sediments of an anoxic marine lake

    USGS Publications Warehouse

    Orem, W.H.; Burnett, W.C.; Landing, W.M.; Lyons, W.B.; Showers, W.

    1991-01-01

    The major postdepositional change in the sedimentary organic matter is carbohydrate biodegradation. Lignin and aliphatic substances are preserved in the sediments. Dissolved organic matter in pore waters is primarily composed of carbohydrates, reflecting the degradation of sedimentary carbohydrates. Rate constants for organic carbon degradation and sulfate reduction in sediments of the lake are about 10?? lower than in other anoxic sediments. This may reflect the vascular plant source and partly degraded nature of the organic matter reaching the sediments of the lake. -from Authors

  20. Fractionation and characterization of organic matter in wastewater from a swine waste-retention basin

    USGS Publications Warehouse

    Leenheer, Jerry A.; Rostad, Colleen E.

    2004-01-01

    Organic matter in wastewater sampled from a swine waste-retention basin in Iowa was fractionated into 14 fractions on the basis of size (particulate, colloid, and dissolved); volatility; polarity (hydrophobic, transphilic, hydrophilic); acid, base, neutral characteristics; and precipitate or flocculates (floc) formation upon acidification. The compound-class composition of each of these fractions was determined by infrared and 13C-NMR spectral analyses. Volatile acids were the largest fraction with acetic acid being the major component of this fraction. The second most abundant fraction was fine particulate organic matter that consisted of bacterial cells that were subfractionated into extractable lipids consisting of straight chain fatty acids, peptidoglycans components of bacterial cell walls, and protein globulin components of cellular plasma. The large lipid content of the particulate fraction indicates that non-polar contaminants, such as certain pharmaceuticals added to swine feed, likely associate with the particulate fraction through partitioning interactions. Hydrocinnamic acid is a major component of the hydrophobic acid fraction, and its presence is an indication of anaerobic degradation of lignin originally present in swine feed. This is the first study to combine particulate organic matter with dissolved organic matter fractionation into a total organic matter fractionation and characterization.

  1. Experimental Study of Soil Organic Matter Loss From Cultivated Field Plots In The Venezuelan Andes.

    NASA Astrophysics Data System (ADS)

    Bellanger, B.; Huon, S.; Velasquez, F.; Vallès, V.; Girardin A, C.; Mariotti, A. B.

    The question of discriminating sources of organic matter in suspended particles of stream flows can be addressed by using total organic carbon (TOC) concentration and stable isotope (13C, 15N) measurements when constant fluxes of organic matter supply can be assumed. However, little is known on the dynamics of organic matter release during soil erosion and on the temporal stability of its isotopic signature. In this study, we have monitored soil organic carbon loss and water runoff using natural rainfall events on three experimental field plots with different vegetation cover (bare soil, maize and coffee fields), set up on natural slopes of a tropical mountainous watershed in NW Venezuela (09°13'32'' ­ 09°10'00''N, 70°13'49'' ­ 70°18'34''W). Runoff and soil loss are markedly superior for the bare field plot than for the coffee field plot: by a factor 15 ­ 36, respectively, for the five-month experiment, and by a factor 30 ­ 120, respectively, during a single rainfall event experiment. Since runoff and soil organic matter loss are closely linked during most of the flow (at the time scales of this study), TOC concentration in suspended matter is constant. Furthermore, stable isotope compositions reflect those of top-soil organic matter from which they originate.

  2. Overestimation of Crop Root Biomass in Field Experiments Due to Extraneous Organic Matter

    PubMed Central

    Hirte, Juliane; Leifeld, Jens; Abiven, Samuel; Oberholzer, Hans-Rudolf; Hammelehle, Andreas; Mayer, Jochen

    2017-01-01

    Root biomass is one of the most relevant root parameters for studies of plant response to environmental change, soil carbon modeling or estimations of soil carbon sequestration. A major source of error in root biomass quantification of agricultural crops in the field is the presence of extraneous organic matter in soil: dead roots from previous crops, weed roots, incorporated above ground plant residues and organic soil amendments, or remnants of soil fauna. Using the isotopic difference between recent maize root biomass and predominantly C3-derived extraneous organic matter, we determined the proportions of maize root biomass carbon of total carbon in root samples from the Swiss long-term field trial “DOK.” We additionally evaluated the effects of agricultural management (bio-organic and conventional), sampling depth (0–0.25, 0.25–0.5, 0.5–0.75 m) and position (within and between maize rows), and root size class (coarse and fine roots) as defined by sieve mesh size (2 and 0.5 mm) on those proportions, and quantified the success rate of manual exclusion of extraneous organic matter from root samples. Only 60% of the root mass that we retrieved from field soil cores was actual maize root biomass from the current season. While the proportions of maize root biomass carbon were not affected by agricultural management, they increased consistently with soil depth, were higher within than between maize rows, and were higher in coarse (>2 mm) than in fine (≤2 and >0.5) root samples. The success rate of manual exclusion of extraneous organic matter from root samples was related to agricultural management and, at best, about 60%. We assume that the composition of extraneous organic matter is strongly influenced by agricultural management and soil depth and governs the effect size of the investigated factors. Extraneous organic matter may result in severe overestimation of recovered root biomass and has, therefore, large implications for soil carbon modeling and

  3. Overestimation of Crop Root Biomass in Field Experiments Due to Extraneous Organic Matter.

    PubMed

    Hirte, Juliane; Leifeld, Jens; Abiven, Samuel; Oberholzer, Hans-Rudolf; Hammelehle, Andreas; Mayer, Jochen

    2017-01-01

    Root biomass is one of the most relevant root parameters for studies of plant response to environmental change, soil carbon modeling or estimations of soil carbon sequestration. A major source of error in root biomass quantification of agricultural crops in the field is the presence of extraneous organic matter in soil: dead roots from previous crops, weed roots, incorporated above ground plant residues and organic soil amendments, or remnants of soil fauna. Using the isotopic difference between recent maize root biomass and predominantly C3-derived extraneous organic matter, we determined the proportions of maize root biomass carbon of total carbon in root samples from the Swiss long-term field trial "DOK." We additionally evaluated the effects of agricultural management (bio-organic and conventional), sampling depth (0-0.25, 0.25-0.5, 0.5-0.75 m) and position (within and between maize rows), and root size class (coarse and fine roots) as defined by sieve mesh size (2 and 0.5 mm) on those proportions, and quantified the success rate of manual exclusion of extraneous organic matter from root samples. Only 60% of the root mass that we retrieved from field soil cores was actual maize root biomass from the current season. While the proportions of maize root biomass carbon were not affected by agricultural management, they increased consistently with soil depth, were higher within than between maize rows, and were higher in coarse (>2 mm) than in fine (≤2 and >0.5) root samples. The success rate of manual exclusion of extraneous organic matter from root samples was related to agricultural management and, at best, about 60%. We assume that the composition of extraneous organic matter is strongly influenced by agricultural management and soil depth and governs the effect size of the investigated factors. Extraneous organic matter may result in severe overestimation of recovered root biomass and has, therefore, large implications for soil carbon modeling and estimations

  4. Nitrogen Isotopic Composition of Organic Matter in a Pristine Collection IDP

    NASA Technical Reports Server (NTRS)

    Messenger, S.; Nakamura-Messenger, K.; Keller, L. P.; Clemett, S. J.; Nguyen, A. N.; Walker, Robert M.

    2012-01-01

    Anhydrous chondritic porous interplanetary dust particles (CP IDPs) are probable cometary materials that show primitive characteristics, such as unequilibrated mineralogy, fragile structure, and abundant presolar grains and organic matter [1-3]. CP IDPs are richer in aliphatic species and N-bearing aromatic hydrocarbons than meteoritic organics and commonly exhibit highly anomalous H and N isotopic compositions [4,5]. Cometary organic matter is of interest in part because it has escaped the hydrothermal processing experienced by meteorites. However, IDPs are collected using silicon oil that must be removed with strong organic solvents such as hexane. This procedure is likely to have removed some fraction of soluble organic phases in IDPs. We recently reported the first stratospheric collection of IDPs without the use of silicone oil [6]. Here we present initial studies of the carbonaceous material in an IDP from this collection.

  5. The association of uranium with organic matter in Holocene peat: An experimental leaching study

    USGS Publications Warehouse

    Zielinski, R.A.; Meier, A.L.

    1988-01-01

    Uraniferous peat was sampled from surface layers of a Holocene U deposit in northeastern Washington State. Dried, sized, and homogenized peat that contained 5980 ??307 ppm U was subjected to a variety of leaching conditions to determine the nature and strength of U-organic bonding in recently accumulated organic matter. The results complement previous experimental studies of U uptake on peat and suggest some natural or anthropogenic disturbances that are favorable for remobilizing U. The fraction of U leached in 24 h experiments at 25??C ranged from 0 to 95%. The most effective leach solutions contained anions capable of forming stable dissolved complexes with uranyl (UO2+2) cation. These included H2SO4 (pH = 1.5) and concentrated (>0.01 M) solutions of sodium bicarbonate-carbonate (pH = 7.0-10.0), or sodium pyrophosphate (pH = 10). Effective leaching by carbonate and pyrophosphate in the absence of added oxidant, and the insignificant effect of added oxidant (as pressurized O2) strongly suggest that U is initially fixed on organic matter as an oxidized U(VI) species. Uranium is more strongly bound than some other polyvalent cations, based on its resistance to exchange in the presence of large excesses of dissolved Ca2+ and Cu2+. Measurements of the rate of U leaching indicate faster rates in acid solution compared to carbonate solution, and are consisten with simultaneous attack of sites with different affinities for U. Sulfuric acid appears a good choice for commercial extraction of U from mined peat. In situ disturbances such as overliming of peat soils, addition of fertilizers containing pyrophosphate, or incursions of natural carbonate-rich waters could produce significant remobilization of U, and possibly compromise the quality of local domestic water supplies. ?? 1988.

  6. The role of aquatic fungi in transformations of organic matter mediated by nutrients

    Treesearch

    Cynthia J. Tant; Amy D. Rosemond; Andrew S. Mehring; Kevin A. Kuehn; John M. Davis

    2015-01-01

    1. We assessed the key role of aquatic fungi in modifying coarse particulate organic matter (CPOM) by affecting its breakdown rate, nutrient concentration and conversion to fine particulate organic matter (FPOM). Overall, we hypothesised that fungal-mediated conditioning and breakdown of CPOM would be accelerated when nutrient concentrations are increased and tested...

  7. Dust inputs and bacteria influence dissolved organic matter in clear alpine lakes.

    PubMed

    Mladenov, N; Sommaruga, R; Morales-Baquero, R; Laurion, I; Camarero, L; Diéguez, M C; Camacho, A; Delgado, A; Torres, O; Chen, Z; Felip, M; Reche, I

    2011-07-26

    Remote lakes are usually unaffected by direct human influence, yet they receive inputs of atmospheric pollutants, dust, and other aerosols, both inorganic and organic. In remote, alpine lakes, these atmospheric inputs may influence the pool of dissolved organic matter, a critical constituent for the biogeochemical functioning of aquatic ecosystems. Here, to assess this influence, we evaluate factors related to aerosol deposition, climate, catchment properties, and microbial constituents in a global dataset of 86 alpine and polar lakes. We show significant latitudinal trends in dissolved organic matter quantity and quality, and uncover new evidence that this geographic pattern is influenced by dust deposition, flux of incident ultraviolet radiation, and bacterial processing. Our results suggest that changes in land use and climate that result in increasing dust flux, ultraviolet radiation, and air temperature may act to shift the optical quality of dissolved organic matter in clear, alpine lakes. © 2011 Macmillan Publishers Limited. All rights reserved.

  8. Xiphinema americanum as Affected by Soil Organic Matter and Porosity.

    PubMed

    Ponchillia, P E

    1972-07-01

    The effects of four soil types, soil porosity, particle size, and organic matter were tested on survival and migration of Xiphinema americanum. Survival and migration were significantly greater in silt loam than in clay loam and silty clay soils. Nematode numbers were significantly greater in softs planted with soybeans than in fallow softs. Nematode survival was greatest at the higher of two pore space levels in four softs. Migration of X. americanum through soft particle size fractions of 75-150, 150-250, 250-500, 500-700, and 700-1,000 mu was significantly greater in the middle three fractions, with the least occurring in the smallest fraction. Additions of muck to silt loam and loamy sand soils resulted in reductions in survival and migration of the nematode. The fulvic acid fraction of muck, extracted with sodium hydroxide, had a deleterious effect on nematode activity. I conclude that soils with small amounts of air-filled pore space, extremes in pore size, or high organic matter content are deleterious to the migration and survival of X. americanum, and that a naturally occurring toxin affecting this species may be present in native soft organic matter.

  9. [Effects of nitrogen application rate on light interception and dry matter distribution at diffe-rent layers in wheat canopy under supplemental irrigation based on measuring soil moisture.

    PubMed

    Zheng, Xue Jiao; Yu, Zhen Wen; Zhang, Yong Li; Shi, Yu

    2018-02-01

    With the large-spike wheat cultivar Shannong 23 as test material,a field experiment was conducted by increasing the relative soil moisture content to 70% and 65% at jointing and anthesis stages. Four nitrogen levels,0 (N 0 ), 180 (N 1 ), 240 (N 2 ) and 300 kg·hm -2 (N 3 ), were designed to examine the effects of nitrogen application rates on the interception of photosynthetic active radiation (PAR) and dry matter distribution of wheat at different canopy layers. The results showed that the total stem number of wheat population at anthesis stage, the leaf area index at 10, 20 and 30 days after anthesis, PAR capture ratio at upper and middle layers and total PAR capture ratio in wheat canopy on day 20 after anthesis of treatment N 2 were significantly higher than those in the treatments of both N 0 and N 1 . Those indexes showed no significant increase when the application rate increased to 300 kg·hm -2 (N 3 ). The vegetative organ dry matter accumulation of all layers at maturity stage of treatment N 2 were significantly higher than N 0 and N 1 . Compared with treatment N 0 and N 1 , N 2 increased the grain and total dry matter accumulation by 36.7% and 35.4%, 9.5% and 10.2%, respectively, but had no significant difference with treatment N 3 . The vegetative organ dry matter accumulation at all layers, grain and total dry matter accumulation were significantly and positively correlated with PAR capture ratio at upper and middle layers, and had no significant correlation with that at lower layer. The vegetative organ dry matter accumulation at all layers was significantly and positively correlated with grain dry matter accumulation. The application rate at 240 kg·hm -2 (N 2 ) would be the optimum treatment under the present experimental condition.

  10. ENVIRONMENTAL RESEARCH BRIEF: CHARACTERIZATION OF ORGANIC MATTER IN SOIL AND AQUIFER SOLIDS

    EPA Science Inventory

    The focus of this work was the evaluation of analytical methods to determine and characterize fractions of subsurface organic matter. Major fractions of total organic carbon (TOC) include: particulate organic carbon (POC) in aquifer material, dissolved organic carbon (DOC) and ...

  11. Enzymatic Regulation of Organic Matter Metabolism in Siberia's Kolyma River Watershed

    NASA Astrophysics Data System (ADS)

    Mann, P. J.; Sobczak, W. V.; Vonk, J. E.; Davydova, A.; Schade, J. D.; Bulygina, E. B.; Davydov, S.; Zimov, N.; Holmes, R. M.

    2011-12-01

    Arctic soils contain vast amounts of ancient organic carbon locked up in permafrost. This organic matter can be unlocked via permafrost thaw and bacterial processing. Microbial communities release enzymes into the environment (ectoenzymes) as a means of degrading organic matter and to acquire carbon, nitrogen and phosphorus for assimilation. Limited ectoenzyme production, or unfavourable in-situ conditions (e.g. temperature, oxygen) can limit degradation of permafrost on land. Environmental conditions may become more favourable for bacterial degradation as carbon compounds are released from permafrost into Arctic streams and rivers. We measured the potential activities of a suite of ectoenzymes within surface waters collected from a range of streams and rivers throughout the Kolyma River basin, Siberia. Ectoenzyme activities were additionally measured in Kolyma river waters collected at three distinct periods of the hydrograph (under-ice, freshet and summer conditions). In total, seven enzymes were studied allowing bacterial requirements for a wide range of compounds including lignin, carbohydrates, proteins and cellulose to be assessed. To investigate the lability of the carbon pool within these waters, we measured the biological oxygen demand over 5 days (BOD). Significant correlations were observed between phenol oxidase activity and BOD across all of the study sites, suggesting the rate of phenolic degradation may be a controlling factor in organic carbon metabolism. The activity rate in ectoenzymes that catalyze phosphate, lignin and carbon substrates varied significantly within the Kolyma river over the hydrograph, indicating that seasonal changes in organic matter composition may also shift the limiting resource for bacterial degradation. High activity rates in ectoenzymes that catalyze lignin, chitin, cellulose and proteins were measured in waters draining permafrost ice complexes. These results suggest that organic carbon is continually processed

  12. Black Carbon in Estuarine and Coastal Ocean Dissolved Organic Matter

    NASA Technical Reports Server (NTRS)

    Mannino, Antonio; Harvey, H. Rodger

    2003-01-01

    Analysis of high-molecular-weight dissolved organic matter (DOM) from two estuaries in the northwest Atlantic Ocean reveals that black carbon (BC) is a significant component of previously uncharacterized DOM, suggesting that river-estuary systems are important exporters of recalcitrant dissolved organic carbon to the ocean.

  13. Isotopic composition of hydrogen in insoluble organic matter from cherts

    NASA Technical Reports Server (NTRS)

    Krishnamurthy, R. V.; Epstein, S.

    1991-01-01

    Robert (1989) reported the presence of unusually enriched hydrogen in the insoluble HF-HCl residue extracted from two chert samples of Eocene and Pliocene ages. Since the presence of heavy hydrogen might be due to the incorporation of extraterrestrial materials, we desired to reexamine the same samples to isolate the D-rich components. Our experiments did not reveal any D-rich components, but the hydrogen isotope composition of the insoluble residue of the two chert samples was well within the range expected for terrestrial organic matter. We also describe a protocol that needs to be followed in the hydrogen isotope analysis of any insoluble organic matter.

  14. The roles of organic matter in the formation of uranium deposits in sedimentary rocks

    USGS Publications Warehouse

    Spirakis, C.S.

    1996-01-01

    Because reduced uranium species have a much smaller solubility than oxidized uranium species and because of the strong association of organic matter (a powerful reductant) with many uranium ores, reduction has long been considered to be the precipitation mechanism for many types of uranium deposits. Organic matter may also be involved in the alterations in and around tabular uranium deposits, including dolomite precipitation, formation of silicified layers, iron-titanium oxide destruction, dissolution of quartz grains, and precipitation of clay minerals. The diagenetic processes that produced these alterations also consumed organic matter. Consequently, those tabular deposits that underwent the more advanced stages of diagenesis, including methanogenesis and organic acid generation, display the greatest range of alterations and contain the smallest amount of organic matter. Because of certain similarities between tabular uranium deposits and Precambrian unconformity-related deposits, some of the same processes might have been involved in the genesis of Precambrian unconformity-related deposits. Hydrologic studies place important constraints on genetic models of various types of uranium deposits. In roll-front deposits, oxidized waters carried uranium to reductants (organic matter and pyrite derived from sulfate reduction by organic matter). After these reductants were oxidized at any point in the host sandstone, uranium minerals were reoxidized and transported further down the flow path to react with additional reductants. In this manner, the uranium ore migrated through the sandstone at a rate slower than the mineralizing ground water. In the case of tabular uranium deposits, the recharge of surface water into the ground water during flooding of lakes carried soluble humic material to the water table or to an interface where humate precipitated in tabular layers. These humate layers then established the chemical conditions for mineralization and related

  15. A mixing-model approach to quantifying sources of organic matter to salt marsh sediments

    NASA Astrophysics Data System (ADS)

    Bowles, K. M.; Meile, C. D.

    2010-12-01

    Salt marshes are highly productive ecosystems, where autochthonous production controls an intricate exchange of carbon and energy among organisms. The major sources of organic carbon to these systems include 1) autochthonous production by vascular plant matter, 2) import of allochthonous plant material, and 3) phytoplankton biomass. Quantifying the relative contribution of organic matter sources to a salt marsh is important for understanding the fate and transformation of organic carbon in these systems, which also impacts the timing and magnitude of carbon export to the coastal ocean. A common approach to quantify organic matter source contributions to mixtures is the use of linear mixing models. To estimate the relative contributions of endmember materials to total organic matter in the sediment, the problem is formulated as a constrained linear least-square problem. However, the type of data that is utilized in such mixing models, the uncertainties in endmember compositions and the temporal dynamics of non-conservative entitites can have varying affects on the results. Making use of a comprehensive data set that encompasses several endmember characteristics - including a yearlong degradation experiment - we study the impact of these factors on estimates of the origin of sedimentary organic carbon in a saltmarsh located in the SE United States. We first evaluate the sensitivity of linear mixing models to the type of data employed by analyzing a series of mixing models that utilize various combinations of parameters (i.e. endmember characteristics such as δ13COC, C/N ratios or lignin content). Next, we assess the importance of using more than the minimum number of parameters required to estimate endmember contributions to the total organic matter pool. Then, we quantify the impact of data uncertainty on the outcome of the analysis using Monte Carlo simulations and accounting for the uncertainty in endmember characteristics. Finally, as biogeochemical processes

  16. The endogenous plant hormones and ratios regulate sugar and dry matter accumulation in Jerusalem artichoke in salt-soil.

    PubMed

    Li, Lingling; Shao, Tianyun; Yang, Hui; Chen, Manxia; Gao, Xiumei; Long, Xiaohua; Shao, Hongbo; Liu, Zhaopu; Rengel, Zed

    2017-02-01

    The changes in content of endogenous hormones in stolons and tubers of Jerusalem artichoke (Helianthus tuberosus L.) regulate tuber growth, but the specific knowledge about the importance of balance among the endogenous hormones is lacking. Two varieties of Jerusalem artichoke (NY-1 and QY-2) were tested for the endogenous zeatin (ZT), auxins (IAA), gibberellins (GA 3 ) and abscisic acid (ABA) in regulating sugar and dry matter accumulation in tubers. The dry matter content and sugar accumulation in tubers were correlated positively with endogenous ZT and negatively with GA 3 content and GA 3 /ABA and IAA/ABA content ratios. Throughout the tuber formation, ZT content was higher in NY-1 than QY-2 tubers, whereas ABA content was higher in QY-2 than NY-1 tubers. The content ratios GA 3 /ABA and IAA/ABA were greater in NY-1 than QY-2 before tuber initiation, but QY-2 surpassed NY-1 during the tuber growth stage. The GA 3 /ABA and IAA/ABA content ratios declined during tuber growth. The results suggested that a dynamic balance of endogenous hormones played an important role in tuber development. Copyright © 2016 Elsevier B.V. All rights reserved.

  17. Progress of organic matter degradation and maturity of compost produced in a large-scale composting facility.

    PubMed

    Nakasaki, Kiyohiko; Marui, Taketoshi

    2011-06-01

    To monitor the progress of organic matter degradation in a large-scale composting facility, the percentage of organic matter degradation was determined by measuring CO(2) evolution during recomposting of compost samples withdrawn from the facility. The percentage of organic matter degradation was calculated as the ratio of the amount of CO(2) evolved from compost raw material to that evolved from each sample during recomposting in the laboratory composting apparatus. It was assumed that the difference in the cumulative emission of CO(2) between the compost raw material and a sample corresponds to the amount of CO( 2) evolved from the sample in the composting facility. Using this method, the changes in organic matter degradation during composting in practical large-scale composting facilities were estimated and it was found that the percentage of organic matter degradation increased more vigorously in the earlier stages than in the later stages of composting. The percentage of organic matter degradation finally reached 78 and 55% for the compost produced from garbage-animal manure mixture and distillery waste (shochu residue), respectively. It was thus ascertained that organic matter degradation progressed well in both composting facilities. Furthermore, by performing a plant growth assay, it was observed that the compost products of both the facilities did not inhibit seed germination and thus were useful in promoting plant growth.

  18. Activation energy and energy density: a bioenergetic framework for assessing soil organic matter stability

    NASA Astrophysics Data System (ADS)

    Williams, E. K.; Plante, A. F.

    2017-12-01

    The stability and cycling of natural organic matter depends on the input of energy needed to decompose it and the net energy gained from its decomposition. In soils, this relationship is complicated by microbial enzymatic activity which decreases the activation energies associated with soil organic matter (SOM) decomposition and by chemical and physical protection mechanisms which decreases the concentrations of the available organic matter substrate and also require additional energies to overcome for decomposition. In this study, we utilize differential scanning calorimetry and evolved CO2 gas analysis to characterize differences in the energetics (activation energy and energy density) in soils that have undergone degradation in natural (bare fallow), field (changes in land-use), chemical (acid hydrolysis), and laboratory (high temperature incubation) experimental conditions. We will present this data in a novel conceptual framework relating these energy dynamics to organic matter inputs, decomposition, and molecular complexity.

  19. Terrestrial dissolved organic matter distribution in the North Sea.

    PubMed

    Painter, Stuart C; Lapworth, Dan J; Woodward, E Malcolm S; Kroeger, Silke; Evans, Chris D; Mayor, Daniel J; Sanders, Richard J

    2018-07-15

    The flow of terrestrial carbon to rivers and inland waters is a major term in the global carbon cycle. The organic fraction of this flux may be buried, remineralized or ultimately stored in the deep ocean. The latter can only occur if terrestrial organic carbon can pass through the coastal and estuarine filter, a process of unknown efficiency. Here, data are presented on the spatial distribution of terrestrial fluorescent and chromophoric dissolved organic matter (FDOM and CDOM, respectively) throughout the North Sea, which receives organic matter from multiple distinct sources. We use FDOM and CDOM as proxies for terrestrial dissolved organic matter (tDOM) to test the hypothesis that tDOM is quantitatively transferred through the North Sea to the open North Atlantic Ocean. Excitation emission matrix fluorescence and parallel factor analysis (EEM-PARAFAC) revealed a single terrestrial humic-like class of compounds whose distribution was restricted to the coastal margins and, via an inverse salinity relationship, to major riverine inputs. Two distinct sources of fluorescent humic-like material were observed associated with the combined outflows of the Rhine, Weser and Elbe rivers in the south-eastern North Sea and the Baltic Sea outflow to the eastern central North Sea. The flux of tDOM from the North Sea to the Atlantic Ocean appears insignificant, although tDOM export may occur through Norwegian coastal waters unsampled in our study. Our analysis suggests that the bulk of tDOM exported from the Northwest European and Scandinavian landmasses is buried or remineralized internally, with potential losses to the atmosphere. This interpretation implies that the residence time in estuarine and coastal systems exerts an important control over the fate of tDOM and needs to be considered when evaluating the role of terrestrial carbon losses in the global carbon cycle. Copyright © 2018 The Author(s). Published by Elsevier B.V. All rights reserved.

  20. Arsenic Speciation and Accumulation in Selected Organs after Oral Administration of Rice Extracts in Wistar Rats.

    PubMed

    Lewchalermvong, Kittima; Rangkadilok, Nuchanart; Nookabkaew, Sumontha; Suriyo, Tawit; Satayavivad, Jutamaad

    2018-03-28

    Despite its nutritional values, rice also contains arsenic. There has been increasing concern about health implications associated with exposure to arsenic through rice consumption. The present study evaluated arsenic accumulation and its speciation in selected organs of Wistar rats after 28 day repeated oral administrations of polished or unpolished rice and their control arsenic compounds (sodium arsenite or dimethylarsinic acid; DMA). Only the treatment of sodium arsenite (2 μg/kg body weight), significantly increased total arsenic concentrations in blood when compared to the distilled water control group. In all groups, total arsenic concentrations were highest in kidney (1.54-1.90 mg/kg) followed by liver (0.85-1.52 mg/kg), and the predominant arsenic form in these organs was DMA. However, there was no significant difference in arsenic accumulation in the measured organs among the control and rice-treated groups. Therefore, the repeated 28 day administration of arsenic-contaminated rice did not cause significant arsenic accumulation in the animal organs.

  1. Enhanced dissolution of cinnabar (mercuric sulfide) by dissolved organic matter isolated from the Florida Everglades

    USGS Publications Warehouse

    Ravichandran, Mahalingam; Aiken, George R.; Reddy, Michael M.; Ryan, Joseph N.

    1998-01-01

    Organic matter isolated from the Florida Everglades caused a dramatic increase in mercury release (up to 35 μM total dissolved mercury) from cinnabar (HgS), a solid with limited solubility. Hydrophobic (a mixture of both humic and fulvic) acids dissolved more mercury than hydrophilic acids and other nonacid fractions of dissolved organic matter (DOM). Cinnabar dissolution by isolated organic matter and natural water samples was inhibited by cations such as Ca2+. Dissolution was independent of oxygen content in experimental solutions. Dissolution experiments conducted in DI water (pH = 6.0) had no detectable (<2.5 nM) dissolved mercury. The presence of various inorganic (chloride, sulfate, or sulfide) and organic ligands (salicylic acid, acetic acid, EDTA, or cysteine) did not enhance the dissolution of mercury from the mineral. Aromatic carbon content in the isolates (determined by 13C NMR) correlated positively with enhanced cinnabar dissolution. ζ-potential measurements indicated sorption of negatively charged organic matter to the negatively charged cinnabar (pHpzc = 4.0) at pH 6.0. Possible mechanisms of dissolution include surface complexation of mercury and oxidation of surface sulfur species by the organic matter.

  2. Meteors as a Delivery Vehicle for Organic Matter to the Early Earth

    NASA Technical Reports Server (NTRS)

    Jenniskens, Peter; DeVincenzi, D. (Technical Monitor)

    2001-01-01

    Only in recent years has a concerted effort been made to study the circumstances under which extraterrestrial organic matter is accreted on Earth by way of meteors. Meteors are the luminous phenomena associated with the (partial) ablation of meteoric matter and represent the dominant pathway from space to Earth, with the possible exception of rare giant impacts of asteroids and comets. Meteors dominated the supply of organics to the early Earth if organic matter survived this pathway efficiently. Moreover, meteors are a source of kinetic energy that can convert inert atmospheric gases such as CO, N, and H2O into useful compounds, such as HCN and NO. Understanding these processes relies heavily on empirical evidence that is still very limited. Here I report on the observations in hand and discuss their relevance in the context of the origin of life.

  3. The fate or organic matter during planetary accretion - Preliminary studies of the organic chemistry of experimentally shocked Murchison meteorite

    NASA Technical Reports Server (NTRS)

    Tingle, Tracy N.; Tyburczy, James A.; Ahrens, Thomas J.; Becker, Christopher H.

    1992-01-01

    The fate of organic matter in carbonaceous meteorites during hypervelocity (1-2 km/sec) impacts is investigated using results of experiments in which three samples of the Murchison (CM2) carbonaceous chondrite were shocked to 19, 20, and 36 GPa and analyzed by highly sensitive thermal-desorption photoionization mass spectrometry (SALI). The thermal-desorptive SALI mass spectra of unshocked CM2 material revealed presence of indigenous aliphatic, aromatic, sulfur, and organosulfur compounds, and samples shocked to about 20 GPa showed little or no loss of organic matter. On the other hand, samples shocked to 36 GPa exhibited about 70 percent loss of organic material and a lower alkene/alkane ratio than did the starting material. The results suggest that it is unlikely that the indigenous organic matter in carbonaceous chondritelike planetesimals could have survived the impact on the earth in the later stages of earth's accretion.

  4. The Preservation of Organic Matter and its Signatures at Experimental Lava Flow Interfaces: Implications for Mars

    NASA Astrophysics Data System (ADS)

    Junium, C. K.; Karson, J. A.; Kahan, T.

    2015-12-01

    The oxidizing nature of Martian soils suggests that the preservation of organic molecules or any direct evidence for life at the surface may not be possible. Future rover missions will need to focus on a variety localitions including those that provide the best possibility for the preservation of organic matter. Volcanic glass and basalt flow surfaces are favored environments for microbial colonization on Earth and this may have been similar on an early Mars. Trace metals and nutrients from easily weathered surface would have provided nutrients as well as substrates for chemolithoautotrophs. In regions of igneous activity, successive flows could overrun microbial communities, trapping potential organic signatures between flows. Here we present experimental evidence for the preservation of organic matter between lava flows and that flow interfaces may be excellent sites for exploratory efforts in the search for Martian biosignatures. We performed a series of experiments using the infrastructure of the Syracuse Lava Project that allows for natural-scale lava flows of up to several hundred kilograms. We subjected cyanobacterial organic matter to overrun by lava under a variety of conditions. In all cases organic matter was preserved between lava flows as chars on the overrun 'colonized" lava and as thin shiny carbon coatings on the overriding flow. The carbon coatings are likely the result of rapid heating and pyrolysis of organic matter that sears to the underside of the overriding lava. Controls yielded no positive signatures for organic matter. We also tested the degree to which the organic matter could be detected remotely using technologies that are found on the Mars Science Laboratory or planned for future missions. We employed elemental and stable isotopes analysis, and Raman spectroscopy. Elemental analysis demonstrated that organic carbon and nitrogen remain in the charred material and that the carbon and nitrogen isotopes of the chars do not deviate

  5. How does pyrogenic organic matter affect the N dynamic in agricultural soils? An incubation study

    NASA Astrophysics Data System (ADS)

    de La Rosa, José M.; Knicker, Heike

    2010-05-01

    Besides other environmental factors, N availability drives the carbon (C) and nitrogen (N) cycles in grasslands. Since grass-dominated ecosystems cover approximately 40% of the terrestrial surface and store more than 30% of global soil organic carbon (SOC), alterations to those ecosystems could have significant consequences and potential implications for global C and N cycles and climate (Schlesinger et al., 1990). Understanding the processes that govern the efficient cycling of nutrients through soil/plant systems remains an important topic to underpin the choice of strategies aimed at ensuring the long-term sustainability of ecosystems. In Mediterranean ecosystems, wild-fires occur frequently. Whereas factors such as water shortage or erosion contribute to reduced N-availability by lowering the litter input, burning additionally increase the refractory N and C-pools by charring litter and humic material (charred pyrogenic organic matter-PyOM) (Gonzalez-Pérez, 2004). In general, the addition of organic matter either as plant residues or farmyard manure has been shown to significantly increase biological activity, microbial biomass and enzyme activity in soil (Dick, 1992). Even in situations where microbial biomass appears to be unaffected, the activity of specific processes (e.g. N mineralization) can be significantly influenced by the addition of organic residues). However, little is known about the changes of the N cycle caused by the addition of PyOM. Therefore, the interest of our research was to study the impact of 15N enriched-biochars either alone or in conjunction with a 15N enriched fertilizer (K15NO3) on aggregate stability and organic carbon (C) and nitrogen (N) distribution among the different soil fractions. The latter may help to elucidate both, the quality of the stored organic matter and if the accumulation is related to interaction with the mineral matter. Therefore, biochar derived from grass material grown on 15N-enriched fertilizer was added

  6. Characterization of water-soluble organic matter isolated from atmospheric fine aerosol

    NASA Astrophysics Data System (ADS)

    Kiss, Gyula; Varga, BáLint; Galambos, IstváN.; Ganszky, Ildikó

    2002-11-01

    Atmospheric fine aerosol (dp < 1.5 μm) was collected at a rural site in Hungary from January to September 2000. The total carbon concentration ranged from 5 to 13 μg m-3 and from 3 to 6 μg m-3 in the first three months and the rest of the sampling period, respectively. On average, water-soluble organic carbon (WSOC) accounted for 66% of the total carbon concentration independent of the season. A variable fraction of the water-soluble organic constituents (38-72% of WSOC depending on the sample) was separated from inorganic ions and isolated in pure organic form by using solid phase extraction on a copolymer sorbent. This fraction was experimentally characterized by an organic matter to organic carbon mass ratio of 1.9, and this value did not change with the seasons. Furthermore, the average elemental composition (molar ratio) of C:H:N:O ≈ 24:34:1:14 of the isolated fraction indicated the predominance of oxygenated functional groups, and the low hydrogen to carbon ratio implied the presence of unsaturated or polyconjugated structures. These conclusions were confirmed by UV, fluorescence, and Fourier transform infrared (FTIR) studies. On the basis of theoretical considerations, the organic matter to organic carbon mass ratio was estimated to be 2.3 for the nonisolated water-soluble organic fraction, resulting in an overall ratio of 2.1 for the WSOC. In order to extend the scope of this estimation to the total organic carbon, which is usually required in mass closure calculations, the aqueous extraction was followed by sequential extraction with acetone and 0.01 M NaOH solution. As a result, a total organic matter to total organic carbon mass ratio of 1.9-2.0 was estimated, but largely on the basis of experimental data.

  7. Soil organic matter fractions in experimental forested watersheds

    Treesearch

    Jennifer L. Parker; Ivan J. Fernandez; Lindsey E. Rustad; Stephen A. Norton

    2002-01-01

    Recent concerns about climate change and atmospheric greenhouse gas concentrations have demonstrated the importance of understanding ecosystem C source/sink relationships. Soil organic matter fractionation was carried out in three paired, forested watershed sites where one of each watershed pair represented a different ecosystem perturbation. The perturbations were 8...

  8. Enhanced decomposition offsets enhanced productivity and soil carbon accumulation in coastal wetlands responding to climate change

    USGS Publications Warehouse

    Kirwan, M.L.; Blum, L.K.

    2011-01-01

    Coastal wetlands are responsible for about half of all carbon burial in oceans, and their persistence as a valuable ecosystem depends largely on the ability to accumulate organic material at rates equivalent to relative sea level rise. Recent work suggests that elevated CO2 and temperature warming will increase organic matter productivity and the ability of marshes to survive sea level rise. However, we find that organic decomposition rates increase by about 12% per degree of warming. Our measured temperature sensitivity is similar to studies from terrestrial systems, twice as high as the response of salt marsh productivity to temperature warming, and roughly equivalent to the productivity response associated with elevated CO2 in C3 marsh plants. Therefore, enhanced CO2 and warmer temperatures may actually make marshes less resilient to sea level rise, and tend to promote a release of soil carbon. Simple projections indicate that elevated temperatures will increase rates of sea level rise more than any acceleration in organic matter accumulation, suggesting the possibility of a positive feedback between climate, sea level rise, and carbon emissions in coastal environments. ?? 2011 Author(s).

  9. Organic matter and containment of uranium and fissiogenic isotopes at the Oklo natural reactors

    USGS Publications Warehouse

    Nagy, B.; Gauthier-Lafaye, F.; Holliger, P.; Davis, D.W.; Mossman, D.J.; Leventhal, J.S.; Rigali, M.J.; Parnell, J.

    1991-01-01

    SOME of the Precambrian natural fission reactors at Oklo in Gabon contain abundant organic matter1,2, part of which was liquefied at the time of criticality and subsequently converted to a graphitic solid3,4. The liquid organic matter helps to reduce U(VI) to U(IV) from aqueous solutions, resulting in the precipitation of uraninite5. It is known that in the prevailing reactor environments, precipitated uraninite grains incorporated fission products. We report here observations which show that these uraninite crystals were held immobile within the resolidified, graphitic bitumen. Unlike water-soluble (humic) organic matter, the graphitic bituminous organics at Oklo thus enhanced radionu-clide containment. Uraninite encased in solid graphitic matter in the organic-rich reactor zones lost virtually no fissiogenic lan-thanide isotopes. The first major episode of uranium and lead migration was caused by the intrusion of a swarm of adjacent dolerite dykes about 1,100 Myr after the reactors went critical. Our results from Oklo imply that the use of organic, hydrophobic solids such as graphitic bitumen as a means of immobilizing radionuclides in pretreated nuclear waste warrants further investigation. ?? 1991 Nature Publishing Group.

  10. Tracing sources of organic matter in adjacent urban streams having different degrees of channel modification.

    PubMed

    Duan, Shuiwang; Amon, Rainer M W; Brinkmeyer, Robin L

    2014-07-01

    Urbanization and stream-channel modifications affect organic matter concentrations and quality in streams, by altering allochthonous organic matter input and in-stream transformation. This study uses multiple tracers (δ(13)C, δ(15)N, C/N ratio, and chlorophyll-a) to track sources of organic matter in two highly urbanized bayous in Houston (Texas, USA). Wastewater treatment plants (WWTPs) are located in headwaters of both bayous and contribute more than 75% to water flow. Low isotopic relatedness to natural end-members and enriched δ(15)N values suggest the influence of WWTPs on the composition of all organic matter fractions. The two bayous differ in degree of channel improvement resulting in different responses to hydrological conditions. During high flow conditions, the influence of terrestrial organic matter and sediment resuspension was much more pronounced in the Buffalo Bayou than in the concrete-lined White Oak Bayou. Particulate organic matter (POM) in White Oak Bayou had similar values of enriched δ(15)N in all subsegments, whereas in Buffalo Bayou, the degree of δ(15)N enrichment was less in the subsegments of the lower watershed. The difference in riparian zone contributions and interactions with sediments/soils was likely responsible for the compositional differences between the two bayous. Phytoplankton inputs were significantly higher in the bayous, especially in slow-flowing sections, relative to the reference sites, and elevated phytoplankton inputs accounted for the observed stable C isotope differences between FPOM and high molecular weight dissolved organic matter (HMW DOM). Relative to POM, HMW DOM in the bayous was similar to WWTP effluents and showed minor longitudinal variability in both streams suggesting that WWTPs contribute much of the DOM in the systems. Urbanization has a major influence on organic matter sources and quality in these urban water bodies and these changes seem further enhanced by stream channel modifications

  11. Do acid volatile sulfides (AVS) influence the accumulation of sediment-bound metals to benthic invertebrates under natural field conditions?

    PubMed

    De Jonge, Maarten; Dreesen, Freja; De Paepe, Josefina; Blust, Ronny; Bervoets, Lieven

    2009-06-15

    The present study evaluates the influence of acid volatile sulfides (AVS) on accumulation of sediment-bound metals in benthic invertebrates under natural field conditions. Natural sediments, pore water, surface water, and two species of widespread benthic invertebrates (Chironomus gr. thummi and Tubifex tubifex) were collected from 17 historical polluted Flemish lowland rivers and measured for metal concentrations. Different sediment characteristics were determined (AVS, organic matter, clay content) and multiple regression was used to study their relationship with accumulated metals in the invertebrates. Physical and chemical analysis of the field samples indicated low metal concentrations in the water and pore water, but very high metal concentrations in the sediment and the invertebrates, especially for Pb (5.99 micromol/ g). In general, metal accumulation in chironomids and tubificid worms was most strongly correlated with total metal concentrations in the sediment and sediment metal concentrations normalized for organic matter and clay content. Following the results of the linear regression model, AVS did not turn out to be a significant variable in describing variation in metal accumulation. Our study clearly demonstrates that, in addition to the results gained from experiments under lab conditions, benthic invertebrates can accumulate metals from unspiked field sediments even when there's an excess of AVS.

  12. Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

    NASA Astrophysics Data System (ADS)

    Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M.

    2013-02-01

    Benthic macroalgae are a common symptom of eutrophication in shallow coastal bays as a result of increased nutrient loads. Microphytobenthos (MPB) and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and MPB on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (∼16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g. L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ∼1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of MPB (i.e. light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24 %, respectively. This decrease likely resulted from shading by macroalgae, which

  13. Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

    NASA Astrophysics Data System (ADS)

    Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M. N.

    2013-08-01

    Microphytobenthos and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and microphytobenthos on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (~ 16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g., L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ~ 1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of microphytobenthos (i.e., light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24%, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of microphytobenthos. The presence of macroalgae decreased SOM lability as well, which

  14. Relative humidity-dependent viscosity of secondary organic material from toluene photo-oxidation and possible implications for organic particulate matter over megacities

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Song, Mijung; Liu, Pengfei F.; Hanna, Sarah J.

    To improve predictions of air quality, visibility, and climate change, knowledge of the viscosities and diffusion rates within organic particulate matter consisting of secondary organic material (SOM) is required. Most qualitative and quantitative measurements of viscosity and diffusion rates within organic particulate matter have focused on SOM particles generated from biogenic volatile organic compounds (VOCs) such as α-pinene and isoprene. In this study, we quantify the relative humidity (RH)-dependent viscosities at 295±1K of SOM produced by photo-oxidation of toluene, an anthropogenic VOC. The viscosities of toluene-derived SOM were 2 × 10 ₋1 to ~6 ×10 6Pa s from 30 tomore » 90%RH, and greater than ~2 × 10 8 Pa s (similar to or greater than the viscosity of tar pitch) for RH ≤ 17%. These viscosities correspond to Stokes–Einstein-equivalent diffusion coefficients for large organic molecules of ~2 ×10 ₋15cm 2s ₋1 for 30 % RH, and lower than ~3 × 10 ₋17cm 2s ₋1 for RH ≤ 17 %. Based on these estimated diffusion coefficients, the mixing time of large organic molecules within 200 nm toluene-derived SOM particles is 0.1–5 h for 30% RH, and higher than ~100 h for RH ≤ 17%. As a starting point for understanding the mixing times of large organic molecules in organic particulate matter over cities, we applied the mixing times determined for toluene-derived SOM particles to the world's top 15 most populous megacities. If the organic particulate matter in these megacities is similar to the toluene-derived SOM in this study, in Istanbul, Tokyo, Shanghai, and São Paulo, mixing times in organic particulate matter during certain periods of the year may be very short, and the particles may be well-mixed. On the other hand, the mixing times of large organic molecules in organic particulate matter in Beijing, Mexico City, Cairo, and Karachi may be long and the particles may not be well-mixed in the afternoon (15:00–17:00 LT) during certain times of

  15. Organic geochemistry and brine composition in Great Salt, Mono, and Walker Lakes

    USGS Publications Warehouse

    Domagalski, Joseph L.; Orem, W.H.; Eugster, H.P.

    1989-01-01

    Samples of Recent sediments, representing up to 1000 years of accumulation, were collected from three closed basin lakes (Mono Lake, CA, Walker Lake, NV, and Great Salt Lake, UT) to assess the effects of brine composition on the accumulation of total organic carbon, the concentration of dissolved organic carbon, humic acid structure and diagenesis, and trace metal complexation. The Great Salt Lake water column is a stratified Na-Mg-Cl-SO4 brine with low alkalinity. Algal debris is entrained in the high density (1.132-1.190 g/cc) bottom brines, and in this region maximum organic matter decomposition occurs by anaerobic processes, with sulfate ion as the terminal electron acceptor. Organic matter, below 5 cm of the sediment-water interface, degrades at a very slow rate in spite of very high pore-fluid sulfate levels. The organic carbon concentration stabilizes at 1.1 wt%. Mono Lake is an alkaline (Na-CO3-Cl-SO4) system. The water column is stratified, but the bottom brines are of lower density relative to the Great Salt Lake, and sedimentation of algal debris is rapid. Depletion of pore-fluid sulfate, near l m of core, results in a much higher accumulation of organic carbon, approximately 6 wt%. Walker Lake is also an alkaline system. The water column is not stratified, and decomposition of organic matter occurs by aerobic processes at the sediment-water interface and by anaerobic processes below. Total organic carbon and dissolved organic carbon concentrations in Walker Lake sediments vary with location and depth due to changes in input and pore-fluid sulfate concentrations. Nuclear magnetic resonance studies (13C) of humic substances and dissolved organic carbon provide information on the source of the Recent sedimentary organic carbon (aquatic vs. terrestrial), its relative state of decomposition, and its chemical structure. The spectra suggest an algal origin with little terrestrial signature at all three lakes. This is indicated by the ratio of aliphatic to

  16. Deposition and accumulation of airborne organic contaminants in Yosemite National Park, Calfornia

    USGS Publications Warehouse

    Mast, Alisa M.; Alvarez, David A.; Zaugg, Steven D.

    2012-01-01

    Deposition and accumulation of airborne organic contaminants in Yosemite National Park were examined by sampling atmospheric deposition, lichen, zooplankton, and lake sediment at different elevations. Passive samplers were deployed in high-elevation lakes to estimate surface-water concentrations. Detected compounds included current-use pesticides chlorpyrifos, dacthal, and endosulfans and legacy compounds chlordane, dichlorodiphenyltrichloroethane-related compounds, dieldrin, hexachlorobenzene, and polychlorinated biphenyls. Concentrations in snow were similar among sites and showed little variation with elevation. Endosulfan concentrations in summer rain appeared to coincide with application rates in the San Joaquin Valley. More than 70% of annual pesticide inputs from atmospheric deposition occurred during the winter, largely because most precipitation falls as snow. Endosulfan and chlordane concentrations in lichen increased with elevation, indicating that mountain cold-trapping might be an important control on accumulation of these compounds. By contrast, chlorpyrifos concentrations were inversely correlated with elevation, indicating that distance from source areas was the dominant control. Sediment concentrations were inversely correlated with elevation, possibly because of the organic carbon content of sediments but also perhaps the greater mobility of organic contaminants at lower elevations. Surface-water concentrations inferred from passive samplers were at sub-parts-per-trillion concentrations, indicating minimal exposure to aquatic organisms from the water column. Concentrations in sediment generally were low, except for dichlorodiphenyldichloroethane in Tenaya Lake, which exceeded sediment guidelines for protection of benthic organisms.

  17. Peatland Organic Matter Chemistry Trends Over a Global Latitudinal Gradient

    NASA Astrophysics Data System (ADS)

    Verbeke, B. A.; Hodgkins, S. B.; Carson, M. A.; Lamit, L. J.; Lilleskov, E.; Chanton, J.

    2017-12-01

    Peatlands contain a significant amount of the global soil carbon, and the climate feedback of carbon cycling within these peatland systems is still relatively unknown. Organic matter composition of peatlands plays a major role in determining carbon storage, and while high latitude peatlands seem to be the most sensitive to climate change, a global picture of peat organic matter chemistry is required to improve predictions and models of greenhouse gas emissions fueled by peatland decomposition. The objective of this research is to test the hypothesis that carbohydrate content of peatlands near the equator will be lower than high latitude peatlands, while aromatic content will be higher. As a part of the Global Peatland Microbiome Project (GPMP), around 2000 samples of peat from 10 to 70 cm across a latitudinal gradient of 79 N to 53 S were measured with Fourier transform infrared spectroscopy (FTIR) to examine the organic matter functional groups of peat. Carbohydrate and aromatic content, as determined by FTIR, are useful proxies of decomposition potential and recalcitrance, respectively. We found a highly significant relationship between carbohydrate and aromatic content, latitude, and depth. Carbohydrate content of high latitude sites were significantly greater than at sites near the equator, in contrast to aromatic content which showed the opposite trend. It is also clear that carbohydrate content decreases with depth while aromatic content increases with depth. Higher carbohydrate content at higher latitudes indicates a greater potential for lability and resultant mineralization to form the greenhouse gases, carbon dioxide and methane, whereas the composition of low latitude peatlands is consistent with their apparent stability. We speculate that the combination of low carbohydrates and high aromatics at warmer locations near the equator could foreshadow the organic matter composition of high latitude peat transitioning to a more recalcitrant form with a

  18. Organic Matter Detection on Mars by Pyrolysis-FTIR: An Analysis of Sensitivity and Mineral Matrix Effects

    NASA Astrophysics Data System (ADS)

    Gordon, Peter R.; Sephton, Mark A.

    2016-11-01

    Returning samples from Mars will require an effective method to assess and select the highest-priority geological materials. The ideal instrument for sample triage would be simple in operation, limited in its demand for resources, and rich in produced diagnostic information. Pyrolysis-Fourier infrared spectroscopy (pyrolysis-FTIR) is a potentially attractive triage instrument that considers both the past habitability of the sample depositional environment and the presence of organic matter that may reflect actual habitation. An important consideration for triage protocols is the sensitivity of the instrumental method. Experimental data indicate pyrolysis-FTIR sensitivities for organic matter at the tens of parts per million level. The mineral matrix in which the organic matter is hosted also has an influence on organic detection. To provide an insight into matrix effects, we mixed well-characterized organic matter with a variety of dry minerals, to represent the various inorganic matrices of Mars samples, prior to analysis. During pyrolysis-FTIR, serpentinites analogous to those on Mars indicative of the Phyllocian Era led to no negative effects on organic matter detection; sulfates analogous to those of the Theiikian Era led, in some instances, to the combustion of organic matter; and palagonites, which may represent samples from the Siderikian Era, led, in some instances, to the chlorination of organic matter. Any negative consequences brought about by these mineral effects can be mitigated by the correct choice of thermal extraction temperature. Our results offer an improved understanding of how pyrolysis-FTIR can perform during sample triage on Mars.

  19. Characterizing Groundwater Sources of Organic Matter to Arctic Coastal Waters

    NASA Astrophysics Data System (ADS)

    Connolly, C. T.; Spencer, R. G.; Cardenas, M. B.; Bennett, P. C.; McNichol, A. P.; McClelland, J. W.

    2016-12-01

    The Arctic is projected to transition from a runoff-dominated system to a groundwater-dominated system as permafrost thaws due to climate change. This fundamental shift in hydrology is expected to increase groundwater flow to Arctic coastal waters, which may be a significant source of dissolved organic matter (DOM) to these waters—even under present conditions—that has been largely overlooked. Here we quantify and elucidate sources of groundwater DOM inputs to lagoons along the eastern Alaskan Beaufort Sea coast using an approach that combines concentration measurements and radiocarbon dating of groundwater, soil profiles, and soil leachable dissolved organic carbon (DOC). Samples were collected in late summer, when soil thaw depths (active layer) were near their maximum extent. As anticipated, the radiocarbon age of bulk soil organic matter increased with depth (modern - 6,100 yBP), while the amount of extractable DOC decreased with depth within the active layer. However, amounts of extractable DOC increased dramatically in thawed permafrost samples collected directly below the actively layer. Concentrations of DOM in groundwater (ranging from 902 to 5,118 μmolL-1 DOC) are one to two orders of magnitude higher than those measured in lagoons and nearby river water. In contrast, the 14C-DOC ages of groundwater (1,400 ± 718 s.d. yBP), lagoon water (1,750 yBP), and river water (1,610 yBP) are comparable. Together these results suggest that: (1) groundwater provides a highly concentrated input of old DOC to Arctic coastal waters; (2) groundwater DOM is likely sourced from organic matter spanning the entire soil profile; and (3) the DOM in rivers along the eastern Alaskan Beaufort Sea coast during late summer is strongly influenced by groundwater sources, but is much lower in concentration due to photo-mineralization and/or biological consumption. These results are key for assessing how changes in land-ocean export of organic matter as permafrost thaws will change

  20. Cytotoxicity and genotoxicity induced in vitro by solvent-extractable organic matter of size-segregated urban particulate matter.

    PubMed

    Velali, Ekaterini; Papachristou, Eleni; Pantazaki, Anastasia; Choli-Papadopoulou, Theodora; Argyrou, Nikoleta; Tsourouktsoglou, Theodora; Lialiaris, Stergios; Constantinidis, Alexandros; Lykidis, Dimitrios; Lialiaris, Thedore S; Besis, Athanasios; Voutsa, Dimitra; Samara, Constantini

    2016-11-01

    Three organic fractions of different polarity, including a non polar organic fraction (NPOF), a moderately polar organic fraction (MPOF), and a polar organic fraction (POF) were obtained from size-segregated (<0.49, 0.49-0.97, 0.97-3 and >3 μm) urban particulate matter (PM) samples, and tested for cytotoxicity and genotoxicity using a battery of in vitro assays. The cytotoxicity induced by the organic PM fractions was measured by the mitochondrial dehydrogenase (MTT) cell viability assay applied on MRC-5 human lung epithelial cells. DNA damages were evaluated through the comet assay, determination of the poly(ADP-Ribose) polymerase (PARP) activity, and the oxidative DNA adduct 8-hydroxy-deoxyguanosine (8-OHdG) formation, while pro-inflammatory effects were assessed by determination of the tumor necrosis factor-alpha (TNF-α) mediator release. In addition, the Sister Chromatid Exchange (SCE) inducibility of the solvent-extractable organic matter was measured on human peripheral lymphocyte. Variations of responses were assessed in relation to the polarity (hence the expected composition) of the organic PM fractions, particle size, locality, and season. Organic PM fractions were found to induce rather comparable Cytotoxicity and genotoxicity of PM appeared to be rather independent from the polarity of the extractable organic PM matter (EOM) with POF often being relatively more toxic than NPOF or MPOF. All assays indicated stronger mass-normalized bioactivity for fine than coarse particles peaking in the 0.97-3 and/or the 0.49-0.97 μm size ranges. Nevertheless, the air volume-normalized bioactivity in all assays was highest for the <0.49 μm size range highlighting the important human health risk posed by the inhalation of these quasi-ultrafine particles. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Aquatic Organic Matter Fluorescence - from phenomenon to application

    NASA Astrophysics Data System (ADS)

    Reynolds, Darren

    2014-05-01

    The use of fluorescence to quantify and characterise aquatic organic matter in river, ocean, ground water and drinking and waste waters has come along way since its discovery as a phenomenon in the early 20th century. For example, there are over 100 papers published each year in international peer reviewed journals, an order of magnitude increase since a decade ago (see Figure taken from ISI database from 1989 to 2007 for publications in the fields of river water and waste water). Since then it has been extensively used as a research tool since the 1990's by scientists and is currently used for a wide variety of applications within a number of sectors. Universities, organisations and companies that research into aquatic organic matter have either recently readily use appropriate fluorescence based techniques and instrumentation. In industry and government, the technology is being taken up by environmental regulators and water and wastewater companies. This keynote presentation will give an overview of aquatic organic matter fluorescence from its conception as a phenomenon through to its current use in a variety of emerging applications within the sectors concerned with understanding, managing and monitoring the aquatic environment. About the Speaker Darren Reynolds pioneered the use of fluorescence spectroscopy for the analysis of wastewaters in the 1990's. He currently leads a research group within the Centre for Research in Biosciences and sits on the Scientific Advisory Board for the Institute of Bio-Sensing Technology at the University of the West of England, Bristol. He is a multidisciplinary scientist concerned with the development of technology platforms for applications in the fields of environment/agri-food and health. His current research interests include the development of optical technologies and techniques for environmental and biological sensing and bio-prospecting applications. He is currently involved in the development and use of synthetic biology

  2. Observed effects of soil organic matter content on the microwave emissivity of soils

    NASA Technical Reports Server (NTRS)

    O'Neill, P. E.; Jackson, T. J.

    1990-01-01

    In order to determine the significance of organic matter content on the microwave emissivity of soils when estimating soil moisture, field experiments were conducted in which 1.4 GHz microwave emissivity data were collected over test plots of sandy loam soil with different organic matter levels (1.8, 4.0, and 6.1 percent) for a range of soil moisture values. Analyses of the observed data show only minor variation in microwave emissivity due to a change in organic matter content at a given moisture level for soils with similar texture and structure. Predictions of microwave emissivity made using a dielectric model for aggregated soils exhibit the same trends and type of response as the measured data when appropriate values for the input parameters were utilized.

  3. Observed effects of soil organic matter content on the microwave intensity of soils

    NASA Technical Reports Server (NTRS)

    Jackson, T. J.; Oneill, P. E.

    1988-01-01

    In order to determine the significance of organic matter content on the microwave emissivity of soils when estimating soil moisture, field experiments were conducted in which 1.4 GHz microwave emissivity data were collected over test plots of sandy loam soil with different organic matter levels (1.8, 4.0, and 6.1 percent) for a range of soil moisture values. Analyses of the observed data show only minor variation in microwave emissivity due to a change in organic matter content at a given moisture level for soils with similar texture and structure. Predictions of microwave emissivity made using a dielectric model for aggregated soils exhibit the same trends and type of response as the measured data when appropriate values for the input parameters were utilized.

  4. Assessment of the unidentified organic matter fraction in fogwater using fluorescence spectroscopy

    NASA Astrophysics Data System (ADS)

    Valsaraj, K.; Birdwell, J.

    2010-07-01

    Dissolved organic matter (DOM) in fogwaters from southeastern Louisiana and central-eastern China has been characterized using excitation-emission matrix (EEM) fluorescence spectroscopy. The results demonstrate that fluorescence spectroscopy can be used to obtain a qualitative assessment of the large fraction of fogwater organic carbon (~40 - 80% by weight) that cannot be identified in terms of specific chemical compounds. The method has the principle advantage that it can be applied at natural abundance concentrations, thus eliminating the need for large sample volumes required to isolate DOM for characterization by other spectroscopic (NMR, FTIR) and chemical (elemental) analyses. It was anticipated that the fogwater organic matter fluorescence spectra would resemble those of surface and rain waters, containing peaks indicative of both humic substances and fluorescent amino acids. Humic- and protein-like fluorophores were observed in the fogwater spectra and fluorescence-derived indices had values comparable to other natural waters. Biological character (intensity of tyrosine and tryptophan peaks) was found to increase with organic carbon concentration. Fogwater organic matter appears to contain a mixture of terrestrially- and microbially-derived material. The fluorescence results show that most of the unidentified fogwater organic carbon can be represented by humic-like and biologically-derived substances similar to those present in other aquatic systems.

  5. Organ sales needn't be exploitative (but it matters if they are).

    PubMed

    Lawlor, Rob

    2011-06-01

    This paper considers two arguments that are common in the literature on organ sales. First, organ sales are exploitative and therefore should not be permitted. Second, it doesn't matter whether organ sales are exploitative or not; the only thing that matters is that we do what is in the interests of those who need to be protected. In this paper, I argue that both of these arguments are too simplistic. My intention, however, is not to argue for or against organ sales. My conclusion, rather, is simply that we cannot hope to address the issue of organ sales if we lack a good understanding of exploitation. We should not attempt to answer the question of whether or not organ sales should be banned on the grounds that they are exploitative without acknowledging and addressing the nuances involved in understanding exploitation.

  6. Persistence of soil organic matter in eroding versus depositional landform positions

    USGS Publications Warehouse

    Berhe, Asmeret Asefaw; Harden, Jennifer W.; Torn, Margaret S.; Kleber, Markus; Burton, Sarah D.; Harte, John

    2012-01-01

    Soil organic matter (SOM) processes in dynamic landscapes are strongly influenced by soil erosion and sedimentation. We determined the contribution of physical isolation of organic matter (OM) inside aggregates, chemical interaction of OM with soil minerals, and molecular structure of SOM in controlling storage and persistence of SOM in different types of eroding and depositional landform positions. By combining density fractionation with elemental and spectroscopic analyses, we showed that SOM in depositional settings is less transformed and better preserved than SOM in eroding landform positions. However, which environmental factors exert primary control on storage and persistence of SOM depended on the nature of the landform position considered. In an annual grassland watershed, protection of SOM by physical isolation inside aggregates and chemical association of organic matter (complexation) with soil minerals, as assessed by correlation with radiocarbon concentration, were more effective in the poorly drained, lowest-lying depositional landform positions, compared to well-drained landform positions in the upper parts of the watershed. Results of this study demonstrated that processes of soil erosion and deposition are important mechanisms of long-term OM stabilization.

  7. Organic Matter Detection on Mars by Pyrolysis-FTIR: An Analysis of Sensitivity and Mineral Matrix Effects.

    PubMed

    Gordon, Peter R; Sephton, Mark A

    2016-11-01

    Returning samples from Mars will require an effective method to assess and select the highest-priority geological materials. The ideal instrument for sample triage would be simple in operation, limited in its demand for resources, and rich in produced diagnostic information. Pyrolysis-Fourier infrared spectroscopy (pyrolysis-FTIR) is a potentially attractive triage instrument that considers both the past habitability of the sample depositional environment and the presence of organic matter that may reflect actual habitation. An important consideration for triage protocols is the sensitivity of the instrumental method. Experimental data indicate pyrolysis-FTIR sensitivities for organic matter at the tens of parts per million level. The mineral matrix in which the organic matter is hosted also has an influence on organic detection. To provide an insight into matrix effects, we mixed well-characterized organic matter with a variety of dry minerals, to represent the various inorganic matrices of Mars samples, prior to analysis. During pyrolysis-FTIR, serpentinites analogous to those on Mars indicative of the Phyllocian Era led to no negative effects on organic matter detection; sulfates analogous to those of the Theiikian Era led, in some instances, to the combustion of organic matter; and palagonites, which may represent samples from the Siderikian Era, led, in some instances, to the chlorination of organic matter. Any negative consequences brought about by these mineral effects can be mitigated by the correct choice of thermal extraction temperature. Our results offer an improved understanding of how pyrolysis-FTIR can perform during sample triage on Mars. Key Words: Mars-Life-detection instruments-Search for Mars' organics-Biosignatures. Astrobiology 16, 831-845.

  8. Studying of shale organic matter structure and pore space transformations during hydrocarbon generation

    NASA Astrophysics Data System (ADS)

    Giliazetdinova, Dina; Korost, Dmitry; Gerke, Kirill

    2016-04-01

    Due to the increased interest in the study of the structure, composition, and oil and gas potential of unconventional hydrocarbon resources, investigations of the transformation of the pore space of rocks and organic matter alterations during the generation of hydrocarbon fluids are getting attention again. Due to the conventional hydrocarbon resources decreasing, there will be a necessity to develop new unconventional hydrocarbon resources. Study of the conditions and processes of hydrocarbon generation, formation and transformation of the pore space in these rocks is pivotal to understand the mechanisms of oil formation and determine the optimal and cost effective ways for their industrial exploration. In this study, we focus on organic matter structure and its interaction with the pore space of shales during hydrocarbon generation and report some new results. Collected rock samples from Domanic horizon of South-Tatar arch were heated in the pyrolyzer to temperatures closely corresponding to different catagenesis stages. X-ray microtomography method and SEM were used to monitor changes in the morphology of the pore space and organic matter structure within studied shale rocks. By routine measurements we made sure that all samples (10 in total) had similar composition of organic and mineral phases. All samples in the collection were grouped according to initial structure and amount of organics and processed separately to: 1) study the influence of organic matter content on the changing morphology of the rock under thermal effects; 2) study the effect of initial structure on the primary migration processes for samples with similar organic matter content. An additional experiment was conducted to study the dynamics of changes in the structure of the pore space and prove the validity of our approach. At each stage of heating the morphology of altered rocks was characterized by formation of new pores and channels connecting primary voids. However, it was noted that

  9. Labile and recalcitrant organic matter utilization by river biofilm under increasing water temperature.

    PubMed

    Ylla, Irene; Romaní, Anna M; Sabater, Sergi

    2012-10-01

    Microbial biofilms in rivers contribute to the decomposition of the available organic matter which typically shows changes in composition and bioavailability due to their origin, seasonality, and watershed characteristics. In the context of global warming, enhanced biofilm organic matter decomposition would be expected but this effect could be specific when either a labile or a recalcitrant organic matter source would be available. A laboratory experiment was performed to mimic the effect of the predicted increase in river water temperature (+4 °C above an ambient temperature) on the microbial biofilm under differential organic matter sources. The biofilm microbial community responded to higher water temperature by increasing bacterial cell number, respiratory activity (electron transport system) and microbial extracellular enzymes (extracellular enzyme activity). At higher temperature, the phenol oxidase enzyme explained a large fraction of respiratory activity variation suggesting an enhanced microbial use of degradation products from humic substances. The decomposition of hemicellulose (β-xylosidase activity) seemed to be also favored by warmer conditions. However, at ambient temperature, the enzymes highly responsible for respiration activity variation were β-glucosidase and leu-aminopeptidase, suggesting an enhanced microbial use of polysaccharides and peptides degradation products. The addition of labile dissolved organic carbon (DOC; dipeptide plus cellobiose) caused a further augmentation of heterotrophic biomass and respiratory activity. The changes in the fluorescence index and the ratio Abs(250)/total DOC indicated that higher temperature accelerated the rates of DOC degradation. The experiment showed that the more bioavailable organic matter was rapidly cycled irrespective of higher temperature while degradation of recalcitrant substances was enhanced by warming. Thus, pulses of carbon at higher water temperature might have consequences for DOC

  10. Preservation of overmature, ancient, sedimentary organic matter in carbonate concretions during outcrop weathering.

    PubMed

    Loyd, S J

    2017-01-01

    Concretions are preferentially cemented zones within sediments and sedimentary rocks. Cementation can result from relatively early diagenetic processes that include degradation of sedimentary organic compounds or methane as indicated by significantly 13 C-depleted or enriched carbon isotope compositions. As minerals fill pore space, reduced permeability may promote preservation of sediment components from degradation during subsequent diagenesis, burial heating and outcrop weathering. Discrete and macroscopic organic remains, macro and microfossils, magnetic grains, and sedimentary structures can be preferentially preserved within concretions. Here, Cretaceous carbonate concretions of the Holz Shale are shown to contain relatively high carbonate-free total organic carbon (TOC) contents (up to ~18.5 wt%) compared to the surrounding host rock (with <2.1 wt%). TOC increases with total inorganic carbon (TIC) content, a metric of the degree of cementation. Pyrite contents within concretions generally correlate with organic carbon contents. Concretion carbonate carbon isotope compositions (δ 13 C carb ) range from -22.5 to -3.4‰ (VPDB) and do not correlate strongly with TOC. Organic carbon isotope compositions (δ 13 C org ) of concretions and host rock are similar. Thermal maturity data indicate that both host and concretion organic matter are overmature and have evolved beyond the oil window maturity stage. Although the organic matter in general has experienced significant oxidative weathering, concretion interiors exhibit lower oxygen indices relative to the host. These results suggest that carbonate concretions can preferentially preserve overmature, ancient, sedimentary organic matter during outcrop weathering, despite evidence for organic matter degradation genetic mechanisms. As a result, concretions may provide an optimal proxy target for characterization of more primary organic carbon concentrations and chemical compositions. In addition, these findings

  11. Impacts of heterogeneous organic matter on phenanthrene sorption--Different soil and sediment samples

    USGS Publications Warehouse

    Karapanagioti, Hrissi K.; Childs, Jeffrey; Sabatini, David A.

    2001-01-01

    Organic petrography has been proposed as a tool for characterizing the heterogeneous organic matter present in soil and sediment samples. A new simplified method is proposed as a quantitative means of interpreting observed sorption behavior for phenanthrene and different soils and sediments based on their organic petrographical characterization. This method is tested under singe solute conditions and at phenanthrene concentration of 1 μg/L. Since the opaque organic matter fraction dominates the sorption process, we propose that by quantifying this fraction one can interpret organic content normalized sorption distribution coefficient (Koc) values for a sample. While this method was developed and tested for various samples within the same aquifer, in the current study the method is validated for soil and sediment samples from different sites that cover a wide range of organic matter origin, age, and organic content. All 10 soil and sediment samples studied had log Koc values for the opaque particles between 5.6 and 6.8. This range of Koc values illustrates the heterogeneity of opaque particles between sites and geological formations and thus the need to characterize the opaque fraction of materials on a site-by-site basis.

  12. Plants Regulate Soil Organic Matter Decomposition in Response to Sea Level Rise

    NASA Astrophysics Data System (ADS)

    Megonigal, P.; Mueller, P.; Jensen, K.

    2014-12-01

    Tidal wetlands have a large capacity for producing and storing organic matter, making their role in the global carbon budget disproportionate to their land area. Most of the organic matter stored in these systems is in soils where it contributes 2-5 times more to surface accretion than an equal mass of minerals. Soil organic matter (SOM) sequestration is the primary process by which tidal wetlands become perched high in the tidal frame, decreasing their vulnerability to accelerated sea level rise. Plant growth responses to sea level rise are well understood and represented in century-scale forecast models of soil surface elevation change. We understand far less about the response of soil organic matter decomposition to rapid sea level rise. Here we quantified the effects of sea level on SOM decomposition rates by exposing planted and unplanted tidal marsh monoliths to experimentally manipulated flood duration. The study was performed in a field-based mesocosm facility at the Smithsonian's Global Change Research Wetland. SOM decomposition rate was quantified as CO2 efflux, with plant- and SOM-derived CO2 separated with a two end-member δ13C-CO2 model. Despite the dogma that decomposition rates are inversely related to flooding, SOM mineralization was not sensitive to flood duration over a 35 cm range in soil surface elevation. However, decomposition rates were strongly and positively related to aboveground biomass (R2≥0.59, p≤0.01). We conclude that soil carbon loss through decomposition is driven by plant responses to sea level in this intensively studied tidal marsh. If this result applies more generally to tidal wetlands, it has important implications for modeling soil organic matter and surface elevation change in response to accelerated sea level rise.

  13. Fifteen years of PARAFAC application to organic matter fluorescence - progress, problems and possibilities

    NASA Astrophysics Data System (ADS)

    Murphy, K.; Stedmon, C. A.; Wunsch, U.

    2017-12-01

    The study of dissolved organic matter in aquatic milieu frequently involves measuring and interpreting fluorescence excitation emission matrices (EEMs) as a proxy for studying the total organic matter pool. Parallel Factor Analysis (PARAFAC) is used widely to identify and track independent organic matter fractions. This approach assumes that each EEM reflects the combined fluorescence signal from a limited number of unique, non-interacting chemical components, which are determined via a fitting algorithm. During the past fifteen years, considerable progress in understanding dissolved organic matter fluorescence has been achieved with the aid of PARAFAC; however, very few identical or ubiquitous fluorescence spectra have been independently identified. We studied the influence of wavelength selection on PARAFAC models and found this factor to have a decisive impact on PARAFAC spectra despite receiving little attention in most studies. Because large, chemically-diverse datasets may be too complex to analyse with PARAFAC, we are exploring novel methods for increasing variability in small datasets in order to reduce biases and increase interpretability. Our results suggest that spectral variability in PARAFAC models between studies are in many cases due to artefacts that could be minimised by careful experimental and modelling approaches.

  14. Organic speciation of size-segregated atmospheric particulate matter

    NASA Astrophysics Data System (ADS)

    Tremblay, Raphael

    Particle size and composition are key factors controlling the impacts of particulate matter (PM) on human health and the environment. A comprehensive method to characterize size-segregated PM organic content was developed, and evaluated during two field campaigns. Size-segregated particles were collected using a cascade impactor (Micro-Orifice Uniform Deposit Impactor) and a PM2.5 large volume sampler. A series of alkanes and polycyclic aromatic hydrocarbons (PAHs) were solvent extracted and quantified using a gas chromatograph coupled with a mass spectrometer (GC/MS). Large volume injections were performed using a programmable temperature vaporization (PTV) inlet to lower detection limits. The developed analysis method was evaluated during the 2001 and 2002 Intercomparison Exercise Program on Organic Contaminants in PM2.5 Air Particulate Matter led by the US National Institute of Standards and Technology (NIST). Ambient samples were collected in May 2002 as part of the Tampa Bay Regional Atmospheric Chemistry Experiment (BRACE) in Florida, USA and in July and August 2004 as part of the New England Air Quality Study - Intercontinental Transport and Chemical Transformation (NEAQS - ITCT) in New Hampshire, USA. Morphology of the collected particles was studied using scanning electron microscopy (SEM). Smaller particles (one micrometer or less) appeared to consist of solid cores surrounded by a liquid layer which is consistent with combustion particles and also possibly with particles formed and/or coated by secondary material like sulfate, nitrate and secondary organic aerosols. Source apportionment studies demonstrated the importance of stationary sources on the organic particulate matter observed at these two rural sites. Coal burning and biomass burning were found to be responsible for a large part of the observed PAHs during the field campaigns. Most of the measured PAHs were concentrated in particles smaller than one micrometer and linked to combustion sources

  15. Characterization and Phenanthrene Sorption of Natural and Pyrogenic Organic Matter Fractions.

    PubMed

    Jin, Jie; Sun, Ke; Wang, Ziying; Yang, Yan; Han, Lanfang; Xing, Baoshan

    2017-03-07

    Pyrogenic humic acid (HA) is released into the environment during the large-scale application of biochar. However, the biogeochemistry of pyrogenic organic matter (PyOM) fractions and their sorption of hydrophobic organic compounds (HOCs) are poorly understood in comparison with natural organic matter (NOM) fractions. HA and humin (HM) fractions isolated from soils and the oxidized biochars were characterized. Sorption of phenanthrene (PHE) by these fractions was also examined. The characterization results demonstrate that pyrogenic HAs are different from natural HAs, with the former having lower atomic H/C ratios, more abundant aromatic C, and higher concentrations of surface carboxylic groups. Compared with the fresh biochars, the K oc of PHE on their oxidized biochars, pyrogenic HA, and HM fractions were undiminished, which is encouraging for the use of biochar in soil remediation. The PyOM fractions exhibited stronger nonlinear sorption than the NOM fractions. In addition, the PyOM fractions had higher sorption capacity than the NOM fractions due to their low polar C content and high aryl C content. The results obtained from this work will shed new light on the impact of the addition of biochar on the biogeochemistry of soil organic matter and on the fate of HOCs in biochar-amended soil.

  16. Sea cucumbers reduce chromophoric dissolved organic matter in aquaculture tanks.

    PubMed

    Sadeghi-Nassaj, Seyed Mohammad; Catalá, Teresa S; Álvarez, Pedro A; Reche, Isabel

    2018-01-01

    Mono-specific aquaculture effluents contain high concentrations of nutrients and organic matter, which affect negatively the water quality of the recipient ecosystems. A fundamental feature of water quality is its transparency. The fraction of dissolved organic matter that absorbs light is named chromophoric dissolved organic matter (CDOM). A sustainable alternative to mono-specific aquaculture is the multitrophic aquaculture that includes species trophically complementary named "extractive" species that uptake the waste byproducts. Sea cucumbers are recognized as efficient extractive species due to the consumption of particulate organic matter (POM). However, the effects of sea cucumbers on CDOM are still unknown. During more than one year, we monitored CDOM in two big-volume tanks with different trophic structure. One of the tanks (-holothurian) only contained around 810 individuals of Anemonia sulcata , whereas the other tank (+holothurian) also included 90 individuals of Holothuria tubulosa and Holothuria forskali . We routinely analyzed CDOM absorption spectra and determined quantitative (absorption coefficients at 325 nm) and qualitative (spectral slopes) optical parameters in the inlet waters, within the tanks, and in their corresponding effluents. To confirm the time-series results, we also performed three experiments. Each experiment consisted of two treatments: +holothurians (+H) and -holothurians (-H). We set up three +H tanks with 80 individuals of A. sulcata and 10 individuals of H. tubulosa in each tank and four -H tanks that contained only 80 individuals of A. sulcata . In the time-series, absorption coefficients at 325 nm ( a 325 ) and spectral slopes from 275 to 295 nm ( S 275-295 ) were significantly lower in the effluent of the +holothurian tank (average: 0.33 m -1 and 16 µm -1 , respectively) than in the effluent of the -holothurian tank (average: 0.69 m -1 and 34 µm -1 , respectively), the former being similar to those found in the inlet

  17. Influence of natural organic matter source on copper speciation as demonstrated by Cu binding to fish gills, by ion selective electrode, and by DGT gel sampler

    USGS Publications Warehouse

    Luider, C.D.; Crusius, John; Playle, R.C.; Curtis, P.J.

    2004-01-01

    Rainbow trout (Oncorhynchus mykiss, 2 g) were exposed to 0−5 μM total copper in ion-poor water for 3 h in the presence or absence of 10 mg C/L of qualitatively different natural organic matter (NOM) derived from water spanning a large gradient in hydrologic residence time. Accumulation of Cu by trout gills was compared to Cu speciation determined by ion selective electrode (ISE) and by diffusive gradients in thin films (DGT) gel sampler technology. The presence of NOM decreased Cu uptake by trout gills as well as Cu concentrations determined by ISE and DGT. Furthermore, the source of NOM influenced Cu binding by trout gills with high-color, allochthonous NOM decreasing Cu accumulation by the gills more than low-color autochthonous NOM. The pattern of Cu binding to the NOM measured by Cu ISE and by Cu accumulation by DGT samplers was similar to the fish gill results. A simple Cu−gill binding model required an NOM Cu-binding factor (F) that depended on NOM quality to account for observed Cu accumulation by trout gills; values of F varied by a factor of 2. Thus, NOM metal-binding quality, as well as NOM quantity, are both important when assessing the bioavailability of metals such as Cu to aquatic organisms.

  18. Glacial-interglacial variations in sediment organic carbon accumulation and benthic foraminiferal assemblages on the Bermuda Rise (ODP Site 1063) during MIS 13 to 10

    NASA Astrophysics Data System (ADS)

    Poli, Maria Serena; Meyers, Philip A.; Thunell, Robert C.; Capodivacca, Marco

    2012-09-01

    We have determined organic carbon concentrations and isotopic compositions and benthic foraminiferal assemblages in sediments deposited between ˜500 and 340 ka at ODP Site 1063 on the northeastern flank of the Bermuda Rise. This time interval includes Marine Isotope Stage (MIS) 11, a particularly warm and long interglacial that was similar to today, and MIS 12, one of the most severe glacials of the last 600 kyr. During MIS 11.3, the peak of interglacial warming, organic carbon accumulation rates are low and benthic foraminiferal assemblages are dominated by Nuttallides umbonifera, a species indicative of oligotrophic environments. Higher accumulation rates during MIS 12 and 10 correspond with elevated sedimentation rates (33-36 cm/kyr). This pattern implies a combination of enhanced delivery and improved preservation of sediment organic matter during these glacial times. Organic δ13C values are less negative during MIS 12 and MIS 10 than during MIS 11, which is consistent with greater glacial-stage marine productivity. High relative abundances ofOridorsalis umbonatus during glacial intervals probably records a low but sustained flux of highly degraded organic material. Large, recurrent fluctuations in the abundance of Epistominella exiguaat the beginnings of the MIS 12 and MIS 10 glaciations suggest a marked increase in local phytoplankton blooms at these times and consequent delivery of phytodetritus to the seafloor. The most likely causes of these variations are changes in the position and strength of the Gulf Stream and its associated cold-ring eddies, combined with increased advection of terrigenous sediments from northerly locations during glacial lowstands.

  19. Early diagenesis of organic matter in a Sawgrass peat from the Everglades, Florida

    USGS Publications Warehouse

    Orem, W.H.; Hatcher, P.G.

    1987-01-01

    The transformation of plant biopolymers to humic substances in peats during early diagenesis is a critical but poorly understood step in the formation of coal. This paper presents results concerning the structural interrelationships among various fractions of the organic matter in peat and the dissolved organic matter in the pore water from a site in The Everglades, relying primarily on elemental analysis and 13C nuclear magnetic resonance for structural elucidation. Our goal was to obtaine some insight into the sequence of steps involved in the formation of humic substances. Results show that the major change occurring in the whole peat during diagenesis is loss of carbohydrates. The components of the peat which are more resistant to microbial degradation become concentrated in the humin fraction. This resistant fraction of the organic matter includes aliphatic and aromatic components. The aromatic components are thought to be derived from lignin while the aliphatic moieties may represent decomposed algal remains. The carbohydrates lost from the whole peat appear to be concentrated in the fulvic acids and the dissolved organic matter in the pore water. The humic acids consist predominantly of aromatic and aliphatic structures, and may represent partially degraded lignin-like structures and aliphatic compounds from algae. The data presented here suggest that humic and fulvic acids are the partially degraded fractions of the peat while the humin contains the resistant or preserved portion of the organic matter. The proposition that humic substances are formed by the condensation of amino acids and sugars is not supported by the results of this study. ?? 1987.

  20. Observation of Accumulated Metal Cation Distribution in Fish by Novel Stigmatic Imaging Time-of-Flight Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Aoki, Jun; Ikeda, Shinichiro; Toyoda, Michisato

    2014-02-01

    The accumulation of radioactive substances in biological organisms is a matter of great concern since the incident at the nuclear power plant in Fukushima, Japan. We have developed a novel technique for observing the distribution of accumulated metal cations in fish that employs a new imaging mass spectrometer, MULTUM-IMG2. Distributions of 133Cs and 88Sr in a sliced section of medaka (Oryzias latipes) are obtained with spatial resolution of µm-scale.

  1. Properties and reactivity of aquatic organic matter from an Amazonian floodplain system

    NASA Astrophysics Data System (ADS)

    Perez, M. A. P.; Benedetti, M. F.; Moreira-Turcq, P.

    2009-04-01

    The aim of this study was to characterize the nature of the bulk dissolved organic matter (DOM) in different types of environments in the Amazon River-floodplain system and determine the importance of two different fractions of dissolved organic matter onto adsorption processes that occurs through the transport of organic matter in the Amazon Basin. Seven samples were collected in the Amazon River - "Lago Grande de Curuai" floodplain system, in rising water levels cruise (March 2006). The samples were taken in the Amazon main stem, in white and black floodplain waters, and in the middle of a phytoplaktonic bloom. The bulk, dissolved (i.e. < 0.22 micrometer), hydrophobic (HPO) and transphilic (TPH) fractions extracted by XAD-8 and XAD-4 columns chromatography respectively were isolated. Organic carbon (OC) and total nitrogen (TN) concentrations, Specific UV absorbance (SUVA), Size-Exclusion Chromatography (SEC), d13C and d15N isotopes, and reactivity (acid-base titration) were characterized for these fractions. Adsorption experiments onto mineral phase from de surface sediment of the Curuai floodplain lake (rich in smectite and kaolinite) were realized with HPO and TPH fractions. The OC concentrations in the natural organic matter (Bulk and < 0.22 micrometer fractions) varied between 3.7-5.7 mg/L. The OC and TN concentrations varied between 510 - 528 mg C/g in the HPO fraction, and 408 - 462 mg C/g in the TPH compounds and between 14.3 - 17.6 mg N/g (HPO), and 22.1 - 30.0 mg N/g (TPH). The molecular weight of both fractions (HPO and TPH) didn't present significant variation. Both fractions presented high aromaticity and they were rich in carboxylic groups, although smaller values are systematically reported for the HPO fractions. The OM of the main stem was the most adsorbed, followed by the white water lake, the phytoplanktonic bloom, and black water lake sample. These results helped us to strengthen the hypothesis that the organic matter carried from the river and

  2. Organic-matter production and preservation and evolution of anoxia in the Holocene Black Sea

    USGS Publications Warehouse

    Arthur, M.A.; Dean, W.E.

    1998-01-01

    Dating of sediments collected in gravity cores during Leg 1 of the 1988 R/V Knorr expedition to the Black Sea suggests that the onset of water-column anoxia at ???7.5 ka was virtually synchronous across the basin over a depth range of ???200 - 2250 m. A finely laminated, organic carbon (OC) rich sapropel (unit II) was produced as a result of this anoxia. The trigger for increased OC production and development of anoxia was the spillover of saline waters through the Bosporus that probably began at ???9.0 ka and peaked between ???7.0 and 5.5 ka. This spillover enhanced vertical mixing and nutrient cycling and caused a short-term (2-3 kyr) burst in surface-water productivity during the early part of unit II deposition. Continued incursion of saline waters enhanced vertical stability and inhibited mixing of nutrients into surface waters, thus limiting primary production and decreasing the OC flux to sediments beginning ???5.5 ka. Concentration, accumulation rate, and degree of preservation of organic matter all decreased in the upper part of unit II as a result of decreasing productivity, but anoxia persisted throughout most of the water column. The end of unit II sapropel deposition was synchronous across the Black Sea as the result of the first blooms of the coccolith Emiliania huxleyi, which presumably marked an increase in surface-water salinity above 11 and the beginning of unit I deposition. The high coccolith-carbonate fluxes that occurred during deposition of unit I diluted the OC concentration in the sediments, but OC accumulation rates are about the same as those in upper part of unit II.

  3. Extraterrestrial organic matter: a review

    NASA Technical Reports Server (NTRS)

    Irvine, W. M.

    1998-01-01

    We review the nature of the widespread organic material present in the Milky Way Galaxy and in the Solar System. Attention is given to the links between these environments and between primitive Solar System objects and the early Earth, indicating the preservation of organic material as an interstellar cloud collapsed to form the Solar System and as the Earth accreted such material from asteroids, comets and interplanetary dust particles. In the interstellar medium of the Milky Way Galaxy more than 100 molecular species, the bulk of them organic, have been securely identified, primarily through spectroscopy at the highest radio frequencies. There is considerable evidence for significantly heavier organic molecules, particularly polycyclic aromatics, although precise identification of individual species has not yet been obtained. The so-called diffuse interstellar bands are probably important in this context. The low temperature kinetics in interstellar clouds leads to very large isotopic fractionation, particularly for hydrogen, and this signature is present in organic components preserved in carbonaceous chondritic meteorites. Outer belt asteroids are the probable parent bodies of the carbonaceous chondrites, which may contain as much as 5% organic material, including a rich variety of amino acids, purines, pyrimidines, and other species of potential prebiotic interest. Richer in volatiles and hence less thermally processed are the comets, whose organic matter is abundant and poorly characterized. Cometary volatiles, observed after sublimation into the coma, include many species also present in the interstellar medium. There is evidence that most of the Earth's volatiles may have been supplied by a 'late' bombardment of comets and carbonaceous meteorites, scattered into the inner Solar System following the formation of the giant planets. How much in the way of intact organic molecules of potential prebiotic interest survived delivery to the Earth has become an

  4. Organic Matter Detection on Mars by Pyrolysis-FTIR: An Analysis of Sensitivity and Mineral Matrix Effects

    PubMed Central

    Gordon, Peter R.

    2016-01-01

    Abstract Returning samples from Mars will require an effective method to assess and select the highest-priority geological materials. The ideal instrument for sample triage would be simple in operation, limited in its demand for resources, and rich in produced diagnostic information. Pyrolysis–Fourier infrared spectroscopy (pyrolysis-FTIR) is a potentially attractive triage instrument that considers both the past habitability of the sample depositional environment and the presence of organic matter that may reflect actual habitation. An important consideration for triage protocols is the sensitivity of the instrumental method. Experimental data indicate pyrolysis-FTIR sensitivities for organic matter at the tens of parts per million level. The mineral matrix in which the organic matter is hosted also has an influence on organic detection. To provide an insight into matrix effects, we mixed well-characterized organic matter with a variety of dry minerals, to represent the various inorganic matrices of Mars samples, prior to analysis. During pyrolysis-FTIR, serpentinites analogous to those on Mars indicative of the Phyllocian Era led to no negative effects on organic matter detection; sulfates analogous to those of the Theiikian Era led, in some instances, to the combustion of organic matter; and palagonites, which may represent samples from the Siderikian Era, led, in some instances, to the chlorination of organic matter. Any negative consequences brought about by these mineral effects can be mitigated by the correct choice of thermal extraction temperature. Our results offer an improved understanding of how pyrolysis-FTIR can perform during sample triage on Mars. Key Words: Mars—Life-detection instruments—Search for Mars’ organics—Biosignatures. Astrobiology 16, 831–845. PMID:27870586

  5. Tracing Sources of Organic Matter in a Midwestern USA Reservoir using Online Tetramethylammonium Hydroxide (TMAH) Thermochemolysis

    NASA Astrophysics Data System (ADS)

    Hayes, J. M.; Blair, N. E.

    2017-12-01

    Increasingly industrial agriculture and food processing practices have created greater demand for water resources. In an attempt to meet this demand, many rivers have been dammed, however the resulting effects of the carbon cycle via carbon sequestration and methane production are not well understood. The organic geochemistry of sediment cores from Lake Decatur, IL, a 95-year-old impoundment on the Sangamon River in the Intensively Managed Landscape - Critical Zone Observatory (IML-CZO), was studied to assess the sources of organic matter to the lake. Online tetramethylammonium hydroxide (TMAH) thermochemolysis GC-MS was used to provide a broad-spectrum analysis using small samples with a minimum of preparation. Intensive corn and soy production have dominated Lake Decatur's nearly 2400 km2 watershed throughout its history. The agricultural land use has led to rapid soil erosion and infilling of the lake. Along with the eroded soil came organic matter enriched in 13C, which is attributed to corn, a C4 plant. This is consistent with an angiosperm-derived lignin signal, as indicated by high syringic/vanillic and cinnamic/vanillic lignin phenol ratios. Since approximately 1980, accumulating organic carbon has become increasingly 13C-depleted, indicating a change in organic carbon input to a more C3 plant signature. However, this is not due to a decrease in corn cultivation acreage, according to land use records. Instead, the ratio of algal (short chain, C12-C18) fatty acids to lignin increases correspondingly from this point, suggesting that this isotopic trend is the result of eutrophication in the lake due to agricultural fertilizer runoff. In the last decade, the organic carbon has become more 13C-enriched again, breaking the trend of the three previous decades. This inflection is captured in the return to a lower fatty acid to lignin ratio in the most recently deposited sediments. We speculate that this recent change in organic carbon input could be the result of

  6. Roles of epi-anecic taxa of earthworms in the organic matter recycling

    NASA Astrophysics Data System (ADS)

    Hoeffner, Kevin; Monard, Cécile; Santonja, Mathieu; Pérès, Guénola; Cluzeau, Daniel

    2017-04-01

    Given their impact on soil functioning and their interactions with soil organisms, earthworms contribute to the recycling of organic matter and participate significantly in the numerous ecosystem services provided by soils. Most studies on the role of earthworms in organic matter recycling were conducted at the level of the four functional groups (epigeic, epi-anecic, anecic strict and endogeic), but their effects at taxa level remain largely unknown. Still, within a functional group, anatomic and physiologic earthworm taxa traits are different, which should impact organic matter recycling. This study aims at determining, under controlled conditions, epi-anecic taxa differences in (i) leaf litter mass loss, (ii) assimilation and (iii) impact on microorganisms communities implied in organic matter degradation. In seperate microcosms, we chose 4 epi anecic taxa (Lumbricus rubellus, Lumbricus festivus, Lumbricus centralis and Lumbricus terrestris). Each taxon was exposed separately to leaves of three different plants (Holcus lanatus, Lolium perenne and Corylus avellana). In the same microcosm, leaves of each plant was both placed on the surface and buried 10cm deep. The experiment lasted 10 days for half of the samples and 20 days for the second half. Microorganisms communities were analysed using TRFLP in each earthworm taxon burrow walls at 20 days. We observed differences between epi-anecic taxa depending on species of plant and the duration of the experiment. Results are discussed taking into account physical and chemical properties of these 3 trophic resources (e.g. C/N ratio, phenolic compounds, percentage of lignin and cellulose...).

  7. Organic Matter and Water Addition Enhance Soil Respiration in an Arid Region

    PubMed Central

    Lai, Liming; Wang, Jianjian; Tian, Yuan; Zhao, Xuechun; Jiang, Lianhe; Chen, Xi; Gao, Yong; Wang, Shaoming; Zheng, Yuanrun

    2013-01-01

    Climate change is generally predicted to increase net primary production, which could lead to additional C input to soil. In arid central Asia, precipitation has increased and is predicted to increase further. To assess the combined effects of these changes on soil CO2 efflux in arid land, a two factorial manipulation experiment in the shrubland of an arid region in northwest China was conducted. The experiment used a nested design with fresh organic matter and water as the two controlled parameters. It was found that both fresh organic matter and water enhanced soil respiration, and there was a synergistic effect of these two treatments on soil respiration increase. Water addition not only enhanced soil C emission, but also regulated soil C sequestration by fresh organic matter addition. The results indicated that the soil CO2 flux of the shrubland is likely to increase with climate change, and precipitation played a dominant role in regulating soil C balance in the shrubland of an arid region. PMID:24204907

  8. Accumulation of planets into the proto-planetary cloud as a process of occurring an amount of characteristic scales into the nonlinear self organized dynamical systems

    NASA Astrophysics Data System (ADS)

    Professor Khachay, Yurie

    2015-04-01

    Two characteristic times are significant for evolution the interior of the homogeneous proto-planetary cloud: the time of bodies free fall towards the clouds mass center and the time of sound distribution through the cloud. With the beginning of proto-planetary disk fragmentation and accumulation of the proto-planets from the bodies and particles there are formed matter content heterogeneities of the finite dimension, heterogeneities of temperature, density and values of kinetic coefficients. The system became more and more complicated with interior interconnections. By the growing of the bodies the difference between the values of the characteristic times and dimensions become larger. The dynamical evolution of the system we could observe with use the numerical modeling of the Earth and Moon formation into the 3-D model [1,2]. The fact, that the linear dimensions of the objects during the accumulation process change from the centimeter and meter dimensions to some thousands of kilometers significantly prevent the mathematical description of these processes. The corresponding values of the no dimensional similarity criterions, which are included into the systems of differential equations, which describe the proto-planetary growing, the conditions for entropy and mass on the growing surface, the equations of the impulse balance, energy and mass into the interior parts of the planet change on an orders of values. Therefore we used very detailed space and time grids for solution the problem using the method of finite differences. The additional complications occur according to necessity to take into account the nonlinear dependence of matter viscosity from the temperature, pressure and chemical matter content. At last we took into account the principal random distribution of heterogeneities, stipulated by bodies and particles falling. Only progression towards that direction and constructing corresponding systems of observation and interpretation allow to hope

  9. Bioavailable Carbon and the Relative Degradation State of Organic Matter in Active Layer and Permafrost Soils

    NASA Astrophysics Data System (ADS)

    Jastrow, J. D.; Burke, V. J.; Vugteveen, T. W.; Fan, Z.; Hofmann, S. M.; Lederhouse, J. S.; Matamala, R.; Michaelson, G. J.; Mishra, U.; Ping, C. L.

    2015-12-01

    The decomposability of soil organic carbon (SOC) in permafrost regions is a key uncertainty in efforts to predict carbon release from thawing permafrost and its impacts. The cold and often wet environment is the dominant factor limiting decomposer activity, and soil organic matter is often preserved in a relatively undecomposed and uncomplexed state. Thus, the impacts of soil warming and permafrost thaw are likely to depend at least initially on the genesis and past history of organic matter degradation before its stabilization in permafrost. We compared the bioavailability and relative degradation state of SOC in active layer and permafrost soils from Arctic tundra in Alaska. To assess readily bioavailable SOC, we quantified salt (0.5 M K2SO4) extractable organic matter (SEOM), which correlates well with carbon mineralization rates in short-term soil incubations. To assess the relative degradation state of SOC, we used particle size fractionation to isolate fibric (coarse) from more degraded (fine) particulate organic matter (POM) and separated mineral-associated organic matter into silt- and clay-sized fractions. On average, bulk SOC concentrations in permafrost were lower than in comparable active layer horizons. Although SEOM represented a very small proportion of the bulk SOC, this proportion was greater in permafrost than in comparable active layer soils. A large proportion of bulk SOC was found in POM for all horizons. Even for mineral soils, about 40% of bulk SOC was in POM pools, indicating that organic matter in both active layer and permafrost mineral soils was relatively undecomposed compared to typical temperate soils. Not surprisingly, organic soils had a greater proportion of POM and mineral soils had greater silt- and clay-sized carbon pools, while cryoturbated soils were intermediate. For organic horizons, permafrost organic matter was generally more degraded than in comparable active layer horizons. However, in mineral and cryoturbated horizons

  10. Highly Pristine Organic Matter in a Xenolith Clast in the Zag H Chrondrite

    NASA Technical Reports Server (NTRS)

    Kebukawa, Y.; Ito, M.; Zolensky, M. E.; Nakato, A.; Suga, H.; Takahashi, Y.; Takeichi, Y.; Mase, K.; Chan, Q.; Fries, M.; hide

    2017-01-01

    The Zag meteorite is a halite-bearing H3-6 chondrite [1]. We have been studying a dark Zag clast with abundant organic matter [2,3], which was proposed to be from Ceres [4,5]. Therefore, our systematic research of the Zag clast may provide an important linkage to the recent remote sensing observations obtained by the DAWN mission to Ceres. We prepared a new sub-sample of this clast for coordinated organic analysis by STXM-XANES and NanoSIMS, in order to understand the nature and origin of the organic matter.

  11. Physiological and biochemical responses of the Polychaete Diopatra neapolitana to organic matter enrichment.

    PubMed

    Carregosa, Vanessa; Velez, Cátia; Pires, Adília; Soares, Amadeu M V M; Figueira, Etelvina; Freitas, Rosa

    2014-10-01

    Several studies have demonstrated that organic matter enrichment may be associated to aquaculture, leading to impoverished benthic communities and species succession with loss of biodiversity, but very few studies have investigated biochemical and physiological alterations that species affected by aquaculture activities undergo. Thus, in the present study, the effects of the organic enrichment originating from an oyster culture were studied in the Polychaete Diopatra neapolitana, a species already shown to be sensitive to inorganic contamination. For this, physiological responses and biochemical alterations were evaluated. The results obtained revealed that individuals from highly organically enriched areas presented lower capacity to regenerate their body but higher glycogen and protein levels. Furthermore, with increasing organic matter D. neapolitana increased the lipid peroxidation (LPO), the oxidized glutathione content (GSSG) and Glutathione S-transferase activity (GSTs) content, and the activity of the antioxidant enzymes catalase (CAT) and superoxide dismutase (SOD). This study evidenced that organic matter enrichment induced biochemical and physiological alterations in D. neapolitana. Thus, this species was shown to be a good sentinel species to monitor organic contamination. Copyright © 2014 Elsevier B.V. All rights reserved.

  12. Temperature effects on the aerobic metabolism of glycogen-accumulating organisms.

    PubMed

    Lopez-Vazquez, Carlos M; Song, Young-Il; Hooijmans, Christine M; Brdjanovic, Damir; Moussa, Moustafa S; Gijzen, Huub J; van Loosdrecht, Mark C M

    2008-10-01

    Short-term temperature effects on the aerobic metabolism of glycogen-accumulating organisms (GAO) were investigated within a temperature range from 10 to 40 degrees C. Candidatus Competibacter Phosphatis, known GAO, were the dominant microorganisms in the enriched culture comprising 93 +/- 1% of total bacterial population as indicated by fluorescence in situ hybridization (FISH) analysis. Between 10 and 30 degrees C, the aerobic stoichiometry of GAO was insensitive to temperature changes. Around 30 degrees C, the optimal temperature for most of the aerobic kinetic rates was found. At temperatures higher than 30 degrees C, a decrease on the aerobic stoichiometric yields combined with an increase on the aerobic maintenance requirements were observed. An optimal overall temperature for both anaerobic and aerobic metabolisms of GAO appears to be found around 30 degrees C. Furthermore, within a temperature range (10-30 degrees C) that covers the operating temperature range of most of domestic wastewater treatment systems, GAOs aerobic kinetic rates exhibited a medium degree of dependency on temperature (theta = 1.046-1.090) comparable to that of phosphorus accumulating organisms (PAO). We conclude that GAO do not have metabolic advantages over PAO concerning the effects of temperature on their aerobic metabolism, and competitive advantages are due to anaerobic processes.

  13. Effect of aggregation on SOC transport: linking soil properties to sediment organic matter

    NASA Astrophysics Data System (ADS)

    Kuhn, Nikolaus J.

    2016-04-01

    Soils are an interface between the Earth's spheres and shaped by the nature of the interaction between them. The relevance of soil properties for the nature of the interaction between atmosphere, hydrosphere and biosphere is well-studied and accepted, on point- or ecotone-scale. However, this understanding of the largely vertical connections between spheres is not matched by a similar recognition of soil properties affecting processes acting largely in a lateral way across the land surface, such as erosion, transport and deposition of soil and the associated organic matter. Understanding the redistribution of eroded soil organic matter falls into several disciplines, most notably soil science, agronomy, hydrology and geomorphology, and recently into biogeochemistry. Accordingly, the way soil and sediment are described differs: in soil science, aggregation and structure are essential properties, while most process-based soil erosion models treat soil as a mixture of individual mineral grains, based on concepts derived in fluvial geomorphology or civil engineering. The actual behavior of aggregated sediment and the associated organic matter is not reflected by either approach and difficult to capture due to the dynamic nature of aggregation, especially in an environment such as running water. Still, a proxy to assess the uncertainties introduced by aggregation on the behavior of soil/sediment organic while moving in water across landscapes and into the aquatic system would represent a major step forward. To develop such a proxy, a database collating relevant soil, organic matter and sediment properties could serve as an initial step to identify which soil types and erosion scenarios are prone to generate a high uncertainty compared to the use of soil texture in erosion models. Furthermore, it could serve to develop standardized analytical procedures for appropriate description of soil and organic matter as sediment.

  14. Particulate organic matter predicts bacterial productivity in a river dominated estuary

    NASA Astrophysics Data System (ADS)

    Crump, B. C.

    2015-12-01

    Estuaries act as coastal filters for organic and inorganic fluvial materials in which microbial, biogeochemical, and ecological processes combine to transform organic matter and nutrients prior to export to the coastal ocean. The function of this estuarine 'bioreactor' is linked to the residence times of those materials and to rates of microbial heterotrophic activity. Our ability to forecast the impact of global change on estuarine bioreactor function requires an understanding of the basic controls on microbial community activity and diversity. In the Columbia River estuary, the microbial community undergoes a dramatic seasonal shift in species composition during which a spring bacterioplankton community, dominated by Flavobacteriaceae and Oceanospirillales, is replaced by a summer community, dominated by Rhodobacteraceae and several common marine taxa. This annual shift occurs in July, following the spring freshet, when river flow and river chlorophyll concentration decrease and when estuarine water residence time increases. Analysis of a large dataset from 17 research cruises (1990-2014) showed that the composition of particulate organic matter in the estuary changes after the freshet with decreasing organic carbon and nitrogen content, and increasing contribution of marine and autochthonous estuarine organic matter (based on PO13C and pigment ratios). Bacterial production rates (measured as leucine or thymidine incorporation rates) in the estuary respond to this change, and correlate strongly with labile particulate nitrogen concentration and temperature during individual sampling campaigns, and with the concentration of chlorophyll in the Columbia River across all seasons. Regression models suggest that the concentration of labile particulate nitrogen and the rate of bacterial production can be predicted from sensor measurements of turbidity, salinity, and temperature in the estuary and chlorophyll in the river. These results suggest that the quality of

  15. Iron oxidation stimulates organic matter decomposition in humid tropical forest soils.

    PubMed

    Hall, Steven J; Silver, Whendee L

    2013-09-01

    Humid tropical forests have the fastest rates of organic matter decomposition globally, which often coincide with fluctuating oxygen (O2 ) availability in surface soils. Microbial iron (Fe) reduction generates reduced iron [Fe(II)] under anaerobic conditions, which oxidizes to Fe(III) under subsequent aerobic conditions. We demonstrate that Fe (II) oxidation stimulates organic matter decomposition via two mechanisms: (i) organic matter oxidation, likely driven by reactive oxygen species; and (ii) increased dissolved organic carbon (DOC) availability, likely driven by acidification. Phenol oxidative activity increased linearly with Fe(II) concentrations (P < 0.0001, pseudo R(2)  = 0.79) in soils sampled within and among five tropical forest sites. A similar pattern occurred in the absence of soil, suggesting an abiotic driver of this reaction. No phenol oxidative activity occurred in soils under anaerobic conditions, implying the importance of oxidants such as O2 or hydrogen peroxide (H2 O2 ) in addition to Fe(II). Reactions between Fe(II) and H2 O2 generate hydroxyl radical, a strong nonselective oxidant of organic compounds. We found increasing consumption of H2 O2 as soil Fe(II) concentrations increased, suggesting that reactive oxygen species produced by Fe(II) oxidation explained variation in phenol oxidative activity among samples. Amending soils with Fe(II) at field concentrations stimulated short-term C mineralization by up to 270%, likely via a second mechanism. Oxidation of Fe(II) drove a decrease in pH and a monotonic increase in DOC; a decline of two pH units doubled DOC, likely stimulating microbial respiration. We obtained similar results by manipulating soil acidity independently of Fe(II), implying that Fe(II) oxidation affected C substrate availability via pH fluctuations, in addition to producing reactive oxygen species. Iron oxidation coupled to organic matter decomposition contributes to rapid rates of C cycling across humid tropical forests

  16. Organic amendments enhance Pb tolerance and accumulation during micropropagation of Daphne jasminea.

    PubMed

    Wiszniewska, Alina; Muszyńska, Ewa; Hanus-Fajerska, Ewa; Smoleń, Sylwester; Dziurka, Michał; Dziurka, Kinga

    2017-01-01

    The study investigated the effects of organic amendments: pineapple pulp (PP) and agar hydrolyzate (AH), on micropropagation and Pb bioaccumulation and tolerance in a woody shrub Daphne jasminea cultured in vitro. The amendments were analyzed for their content of carbohydrates, phenolic acids, and phytohormones and added at a dose of 10 mL L -1 to the medium containing 1.0 mM lead nitrate. Micropropagation coefficient increased by 10.2-16.6 % in PP and AH variants, respectively. Growth tolerance index increased by 22.9-31.8 % for the shoots and by 60.1-82.4 % for the roots. In the absence of Pb, the additives inhibited multiplication and growth of microplantlets. PP and AH facilitated Pb accumulation in plant organs, especially in the roots. PP enhanced bioconcentration factor and AH improved Pb translocation to the shoots. Adaptation to Pb was associated with increased accumulation of phenolics and higher radical scavenging activity. Medium supplementation, particularly with AH, enhanced antiradical activity of Pb-adapted lines but reduced the content of phenolic compounds. The study results indicated that supplementation with organic amendments may be beneficial in in vitro selection against lead toxicity.

  17. Urban infrastructure influences dissolved organic matter quality and bacterial metabolism in an urban stream network

    EPA Science Inventory

    Urban streams are degraded by a suite of factors, including burial beneath urban infrastructure (i.e., roads, parking lots) that eliminates light and reduces direct organic matter inputs to streams, with likely consequences for organic matter metabolism by microbes and carbon lim...

  18. Controls on Soil Organic Matter in Blue Carbon Ecosystems along the South Florida Coast

    NASA Astrophysics Data System (ADS)

    Smoak, J. M.; Rosenheim, B. E.; Moyer, R. P.; Radabaugh, K.; Chambers, L. G.; Lagomasino, D.; Lynch, J.; Cahoon, D. R.

    2017-12-01

    Coastal wetlands store disproportionately large amounts of carbon due to high rates of net primary productivity and slow microbial degradation of organic matter in water-saturated soils. Wide spatial and temporal variability in plant communities and soil biogeochemistry necessitate location-specific quantification of carbon stocks to improve current wetland carbon inventories and future projections. We apply field measurements, remote sensing technology, and spatiotemporal models to quantify regional carbon storage and to model future spatial variability of carbon stocks in mangroves and coastal marshes in Southwest Florida. We examine soil carbon accumulation and accretion rates on time scales ranging from decadal to millennial to project responses to climate change, including variations in inundation and salinity. Once freshwater and oligohaline wetlands are exposed to increased duration and spatial extent of inundation and salinity from seawater, soil redox potential, soil respiration, and the intensification of osmotic stress to vegetation and the soil microbial community can affect the soil C balance potentially increasing rates of mineralization.

  19. The Rusty Sink: Iron Promotes the Preservation of Organic Matter in Sediments

    NASA Astrophysics Data System (ADS)

    Lalonde, K. M.; Mucci, A.; Moritz, A.; Ouellet, A.; Gelinas, Y.

    2011-12-01

    The biogeochemical cycles of iron (Fe) and organic carbon (OC) are strongly interlinked. In oceanic waters, organic ligands have been shown to control the concentration of dissolved Fe [1], whereas in soils, solid Fe phases provide a sheltering and preservative effect for organic matter [2]. Until now however, the role of iron in the preservation of OC in sediments has not been clearly established. Here we show that 21.5 ± 8.6% of the OC in sediments is directly bound to reactive iron phases, which promote the preservation of OC in sediments. Iron-bound OC represents a global mass of 19 to 45 × 10^15 g of OC in surface marine sediments. This pool of OC is different from the rest of sedimentary OC, with 13C and nitrogen-enriched organic matter preferentially bound to Fe which suggests that biochemical fractionation occurs with OC-Fe binding. Preferential binding also affects the recovery of high molecular weight lipid biomarkers and acidic lignin oxidation products, changing the environmental message of proxies derived from these biomarkers. [1] Johnson, K. S., Gordon, R. M. & Coale, K. H. What controls dissolved iron in the world ocean? Marine Chemistry 57, 137-161 (1997). [2] Kaiser, K. & Guggenberger, G. The role of DOM sorption to mineral surfaces in the preservation of organic matter in soils. Organic Geochemistry 31, 711-725 (2000).

  20. Quenching and Sensitizing Fullerene Photoreactions by Natural Organic Matter

    EPA Science Inventory

    Effects of natural organic matter (NOM) on the photoreaction kinetics of fullerenes (i.e., C60 and fullerenol) were investigated using simulated sunlight and monochromatic radiation (365 nm). NOM from several sources quenched (slowed) the photoreaction of C60 aggregates in water ...

  1. Advanced solid-state NMR spectroscopy of natural organic matter

    USDA-ARS?s Scientific Manuscript database

    Solid-state NMR is essential for the characterization of natural organic matter (NOM) and is gaining importance in geosciences and environmental sciences. This review is intended to highlight advanced solid-state NMR techniques, especially the systematic approach to NOM characterization, and their ...

  2. Impact of Urbanisation on Soil Organic Matter Content in chernozems in Vojvodina region

    NASA Astrophysics Data System (ADS)

    Samardžić, Miljan; Vasin, Jovica; Jajić, Igor; Vasenev, Ivan

    2017-04-01

    Vojvodina is the northern province of Serbia and the chief agricultural centre of the country. The main soil type in Vojvodina is chernozem (60% of total area), and it is under heavy anthropogenic pressure. Changes in soil organic matter amount resulting from switching from natural to urban ecosystems on Vojvodina's chernozem were not thoroughly researched in the past, which gave us unique insight in soil organic matter losses under human activity, namely urbanisation. The research has been carried out during July 2016 at Nature reserve Čarnok (as a control) and urban settlements Zmajevo, Vrbas and Kula, which are located 12 km from each other and Čarnok. Urban locations were lawns, chosen according to information from the owners (no known ploughing, no addition of sandy or clay material during last 70 years, no grass sowing and only direct human activity is trimming of grass). The results showed significant reduction of humus content in urban ecosystems: Čarnok (control, natural reserve) humus 5,33%, organic C 3,488%; Zmajevo humus 2,51%, organic C 1,963%; Vrbas humus 3,81%, organic C 4,216%; Kula humus 1,95%, organic C 1,517%. The differences in organic carbon also showed basically the same trend with notable exception of Vrbas. These differences in soil organic matter content is generally based on grass trimming practices. In Zmajevo, grass was trimmed monthly, with removal of biomass from the lawn, in Kula grass was trimmed twice per month with removal of biomass and in Vrbas trimming was performed once per week, with shredding of biomass and leaving it on the lawn. The conclusion was that land use change has advert impact on soil organic matter content in urban ecosystems, and that within it human practices such as trimming have significant impact on it.

  3. Correlation of soil and sediment organic matter polarity to aqueous sorption of nonionic compounds

    USGS Publications Warehouse

    Kile, D.E.; Wershaw, R. L.; Chiou, C.T.

    1999-01-01

    Polarities of the soiL/sediment organic matter (SOM) in 19 soil and 9 freshwater sediment sam pies were determined from solid-state 13C-CP/MAS NMR spectra and compared with published partition coefficients (K(oc)) of carbon tetrachloride (CT) from aqueous solution. Nondestructive analysis of whole samples by solid-state NMR permits a direct assessment of the polarity of SOM that is not possible by elemental analysis. The percent of organic carbon associated with polar functional groups was estimated from the combined fraction of carbohydrate and carboxylamide-ester carbons. A plot of the measured partition coefficients (K(oc)) of carbon tetrachloride (CT) vs. percent polar organic carbon (POC) shows distinctly different populations of soils and sediments as well as a roughly inverse trend among the soil/sediment populations. Plots of K(oc) values for CT against other structural group carbon fractions did not yield distinct populations. The results indicate that the polarity of SOM is a significant factor in accounting for differences in K(oc) between the organic matter in soils and sediments. The alternate direct correlation of the sum of aliphatic and aromatic structural carbons with K(oc) illustrates the influence of nonpolar hydrocarbon on solute partition interaction. Additional elemental analysis data of selected samples further substantiate the effect of the organic matter polarity on the partition efficiency of nonpolar solutes. The separation between soil and sediment samples based on percent POC reflects definite differences of the properties of soil and sediment organic matters that are attributable to diagenesis.Polarities of the soil/sediment organic matter (SOM) in 19 soil and 9 freshwater sediment samples were determined from solid-state 13C-CP/MAS NMR spectra and compared with published partition coefficients (Koc) of carbon tetrachloride (CT) from aqueous solution. Nondestructive analysis of whole samples by solid-state NMR permits a direct

  4. Bioavailability of organic matter in a highly disturbed Estuary: The role of detrital and algal resources

    USGS Publications Warehouse

    Sobczak, W.V.; Cloern, J.E.; Jassby, A.D.; Muller-Solger, A. B.

    2002-01-01

    The importance of algal and detrital food supplies to the planktonic food web of a highly disturbed, estuarine ecosystem was evaluated in response to declining zooplankton and fish populations. We assessed organic matter bioavailability among a diversity of habitats and hydrologic inputs over 2 years in San Francisco Estuary's Sacramento-San Joaquin River Delta. Results show that bioavailable dissolved organic carbon from external riverine sources supports a large component of ecosystem metabolism. However, bioavailable particulate organic carbon derived primarily from internal phytoplankton production is the dominant food supply to the planktonic food web. The relative importance of phytoplankton as a food source is surprising because phytoplankton production is a small component of the ecosystem's organic-matter mass balance. Our results indicate that management plans aimed at modifying the supply of organic matter to riverine, estuarine, and coastal food webs need to incorporate the potentially wide nutritional range represented by different organic matter sources.

  5. Isotopic constraints on the origin of meteoritic organic matter

    NASA Technical Reports Server (NTRS)

    Kerridge, J. F.

    1991-01-01

    Salient features of the isotopic distribution of H, C and N in the organic material found in carbonaceous meteorites are noted. Most organic fractions are strongly enriched in D with respect to the D/H ratio characteristic of H2 in the protosolar system; substantial variations in C-13/C-12 ratio are found among different molecular species, with oxidised species tending to be C-13 enriched relative to reduced species; some homologous series reveal systematic decrease in C-13/C-12 with increasing C number; considerable variation in N-15/N-14 ratio is observed within organic matter, though no systematic pattern to its distribution has yet emerged; no interelement correlations have been observed between isotope enrichments for the different biogenic elements. The isotopic complexity echoes the molecular diversity observed in meteoritic organic matter and suggests that the organic matter was formed by multiple processes and/or from multiple sources. However, existence of a few systematic patterns points towards survival of isotopic signatures characteristic of one or more specific processes. The widespread D enrichment implies either survival of many species of interstellar molecule or synthesis from a reservoir containing a significant interstellar component. Several of the questions raised above can be addressed by more detailed determination of the distribution of the H, C and N isotopes among different well-characterized molecular fractions. Thus, the present study is aimed at discovering whether the different amino acids have comparable D enrichments, which would imply local synthesis from a D-enriched reservoir, or very viable D enrichments, which would imply survival of some interstellar amino acids. The same approach is also being applied to polycyclic aromatic hydrocarbons. Because the analytical technique employed (secondary ion mass spectrometry) can acquire data for all three isotopic systems from each molecular fraction, any presently obscured interelement

  6. The removal characteristics of natural organic matter in the recycling of drinking water treatment sludge: Role of solubilized organics.

    PubMed

    Zhou, Zhiwei; Yang, Yanling; Li, Xing; Ji, Siyang; Zhang, Hao; Wang, Shuai; Zeng, Qingping; Han, Xinghang

    2016-01-01

    To clarify the role of solubilized organics derived from drinking water treatment sludge (DWTS) in the elimination of natural organic matter (NOM) in the DWTS recycling process, a probe sonoreactor at a frequency of 25 kHz was used to solubilize the organics at varied specific energies. The coagulation behavior related to NOM removal in recycling the sonicated DWTS with and without solubilized organics was evaluated, and the effect on organic fractionations in coagulated water was determined. The study results could provide useful implications in designing DWTS recycling processes that avoid the enrichment of organic matter. Our results indicate that DWTS was disrupted through a low release of soluble chemical oxygen demand (SCOD) and proteins, which could deteriorate the coagulated water quality under the specific energy of 37.87-1212.1 kW h/kg TS. The optimal coagulation behavior for NOM removal was achieved by recycling the sonicated DWTS without solubilized organics at 151.5 kW h/kg TS specific energy. Recycling the sonicated DWTS could increase the enrichment potential of weakly hydrophobic acid, hydrophilic matter, and <3 kDa fractions; the enrichment risks could be reduced by discharging the solubilized organics. Fluorescent characteristic analysis indicated that when recycling the sonicated DWTS without solubilized organics, the removal of humic-like substances was limited, whereas removal of protein-like substances was enhanced, lowering the enrichment potential of protein-like substances. Copyright © 2015. Published by Elsevier B.V.

  7. [Inversion of organic matter content of the north fluvo-aquic soil based on hyperspectral and multi-spectra].

    PubMed

    Wang, Yan-Cang; Gu, Xiao-He; Zhu, Jin-Shan; Long, Hui-Ling; Xu, Peng; Liao, Qin-Hong

    2014-01-01

    The present study aims to assess the feasibility of multi-spectral data in monitoring soil organic matter content. The data source comes from hyperspectral measured under laboratory condition, and simulated multi-spectral data from the hyperspectral. According to the reflectance response functions of Landsat TM and HJ-CCD (the Environment and Disaster Reduction Small Satellites, HJ), the hyperspectra were resampled for the corresponding bands of multi-spectral sensors. The correlation between hyperspectral, simulated reflectance spectra and organic matter content was calculated, and used to extract the sensitive bands of the organic matter in the north fluvo-aquic soil. The partial least square regression (PLSR) method was used to establish experiential models to estimate soil organic matter content. Both root mean squared error (RMSE) and coefficient of the determination (R2) were introduced to test the precision and stability of the modes. Results demonstrate that compared with the hyperspectral data, the best model established by simulated multi-spectral data gives a good result for organic matter content, with R2=0.586, and RMSE=0.280. Therefore, using multi-spectral data to predict tide soil organic matter content is feasible.

  8. The role of clay minerals in the preservation of organic matter in sediments of Qinghai Lake, NW China

    USGS Publications Warehouse

    Yu, Bingsong; Dong, Hailiang; Jiang, Hongchen; Lv, Guo; Eberl, Dennis D.; Li, Shanying; Kim, Jinwook

    2009-01-01

    The role of saline lake sediments in preserving organic matter has long been recognized. In order to further understand the preservation mechanisms, the role of clay minerals was studied. Three sediment cores, 25, 57, and 500 cm long, were collected from Qinghai Lake, NW China, and dissected into multiple subsamples. Multiple techniques were employed, including density fractionation, X-ray diffraction, scanning and transmission electron microscopy (SEM and TEM), total organic carbon (TOC) and carbon compound analyses, and surface area determination. The sediments were oxic near the water-sediment interface, but became anoxic at depth. The clay mineral content was as much as 36.8%, consisting mostly of illite, chlorite, and halloysite. The TEM observations revealed that organic matter occurred primarily as organic matter-clay mineral aggregates. The TOC and clay mineral abundances are greatest in the mid-density fraction, with a positive correlation between the TOC and mineral surface area. The TOC of the bulk sediments ranges from 1 to 3% with the non-hydrocarbon fraction being predominant, followed by bitumen, saturated hydrocarbon, aromatic hydrocarbons, and chloroform-soluble bitumen. The bimodal distribution of carbon compounds of the saturated hydrocarbon fraction suggests that organic matter in the sediments was derived from two sources: terrestrial plants and microorganisms/algae. Depthrelated systematic changes in the distribution patterns of the carbon compounds suggest that the oxidizing conditions and microbial abundance near the water-sediment interface promote degradation of labile organic matter, probably in adsorbed form. The reducing conditions and small microbial biomass deeper in the sediments favor preservation of organic matter, because of the less labile nature of organic matter, probably occurring within clay mineral-organic matter aggregates that are inaccessible to microorganisms. These results have important implications for our

  9. Glaciers as a source of ancient and labile organic matter to the marine environment.

    Treesearch

    Eran Hood; Jason Fellman; Robert G.M. Spencer; Peter J. Hernes; Rick Edwards; David D' Amore; Durelle Scott

    2009-01-01

    Riverine organic matter supports of the order of one-fifth of estuarine metabolism. Coastal ecosystems are therefore sensitive to alteration of both the quantity and lability of terrigenous dissolved organic matter (DOM) delivered by rivers. Here we characterize streamwater DOM from 11 coastal watersheds on the Gulf of Alaska that vary widely in glacier coverage. In...

  10. Interaction between inorganic nutrients and organic matter in controlling coral reef communities in Glovers Reef Belize.

    PubMed

    McClanahan, T R; Steneck, R S; Pietri, D; Cokos, B; Jones, S

    2005-05-01

    We studied the responses of algae, corals, and small fish to elevated inorganic fertilizer, organic matter, and their combination over a 49-day summer period in cages that simulated the coral reef in the remote Glovers reef atoll, Belize. The addition of organic matter reduced while fertilization had no effect on the numbers of herbivorous damsel and parrotfishes. All measures of algal biomass were influenced by fertilization. The combined inorganic and organic enrichment produced the highest algal biomass, which is most likely due to the combined effect of higher nutrients and lower herbivory. The cover of turf and total algae were influenced by all treatments and their interactions and most strongly and positively influenced by fertilization followed by organic matter and the combination of organic matter and inorganic fertilizer. The inorganic and combined treatments were both dominated by two turf algae, Enteromorpha prolifera and Digenia simplex, while the nonfertilized treatments were dominated by brown frondose algae Lobophora variegata, Padina sanctae, and Dictyota cervicornis. The organic matter treatment had greater cover of P. sanctae and D. cervicornis than the untreated control, which was dominated by Lobophora variegata, also the dominant algae on the nearby patch reefs. Crustose corallines grew slowly ( approximately 2.5 mm/49 days) and were not influenced by the treatments when grown on vertical surfaces but decreased on horizontal coral plates in the combined organic matter and fertilization treatment. No mortality occurred for the two coral species that were added to the cages. Porites furcata darkened in the fertilized cages while there was a mix of paling and darkening for a small amount of the coral tissue of Diploria labyrinthiformes. Inorganic fertilization stimulates small filamentous turf algae and Symbiodinium living in coral but inhibits brown frondose algae. Organic matter inhibits small herbivorous fish, L. variegata, and encrusting

  11. Organic carbon accumulation in modern sediments of the Angola basin influenced by the Congo deep-sea fan

    NASA Astrophysics Data System (ADS)

    Baudin, François; Martinez, Philippe; Dennielou, Bernard; Charlier, Karine; Marsset, Tania; Droz, Laurence; Rabouille, Christophe

    2017-08-01

    Geochemical data (total organic carbon-TOC content, δ13Corg, C:N, Rock-Eval analyses) were obtained on 150 core tops from the Angola basin, with a special focus on the Congo deep-sea fan. Combined with the previously published data, the resulting dataset (322 stations) shows a good spatial and bathymetric representativeness. TOC content and δ13Corg maps of the Angola basin were generated using this enhanced dataset. The main difference in our map with previously published ones is the high terrestrial organic matter content observed downslope along the active turbidite channel of the Congo deep-sea fan till the distal lobe complex near 5000 m of water-depth. Interpretation of downslope trends in TOC content and organic matter composition indicates that lateral particle transport by turbidity currents is the primary mechanism controlling supply and burial of organic matter in the bathypelagic depths.

  12. Characterization and origin of polar dissolved organic matter from the Great Salt Lake

    USGS Publications Warehouse

    Leenheer, J.A.; Noyes, T.I.; Rostad, C.E.; Davisson, M.L.

    2004-01-01

    Polar dissolved organic matter (DOM) was isolated from a surface-water sample from the Great Salt Lake by separating it from colloidal organic matter by membrane dialysis, from less-polar DOM fractions by resin sorbents, and from inorganic salts by a combination of sodium cation exchange followed by precipitation of sodium salts by acetic acid during evaporative concentration. Polar DOM was the most abundant DOM fraction, accounting for 56% of the isolated DOM. Colloidal organic matter was 14C-age dated to be about 100% modern carbon and all of the DOM fractions were 14C-age dated to be between 94 and 95% modern carbon. Average structural models of each DOM fraction were derived that incorporated quantitative elemental and infrared, 13C-NMR, and electrospray/mass spectrometric data. The polar DOM model consisted of open-chain N-acetyl hydroxy carboxylic acids likely derived from N-acetyl heteropolysaccharides that constituted the colloidal organic matter. The less polar DOM fraction models consisted of aliphatic alicyclic ring structures substituted with carboxyl, hydroxyl, ether, ester, and methyl groups. These ring structures had characteristics similar to terpenoid precursors. All DOM fractions in the Great Salt Lake are derived from algae and bacteria that dominate DOM inputs in this lake.

  13. Molecular characterization of effluent organic matter in secondary effluent and reclaimed water: Comparison to natural organic matter in source water.

    PubMed

    Wang, Xin; Wang, Juan; Li, Kuixiao; Zhang, Haifeng; Yang, Min

    2018-01-01

    Municipal wastewater reclamation is becoming of increasing importance in the world to solve the problem of water scarcity. A better understanding of the molecular composition of effluent organic matter (EfOM) in the treated effluents of municipal wastewater treatment plants (WWTPs) is crucial for ensuring the safety of water reuse. In this study, the molecular composition of EfOM in the secondary effluent of a WWTP in Beijing and the reclaimed water further treated with a coagulation-sedimentation-ozonation process were characterized using a non-target Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) method and compared to that of natural organic matter (NOM) in the local source water from a reservoir. It was found that the molecular composition of EfOM in the secondary effluent and reclaimed water was dominated by CHOS formulas, while NOM in the source water was dominated by CHO formulas. The CHO formulas of the three samples had similar origins. Anthropogenic surfactants were responsible for the CHOS formulas in EfOM of the secondary effluent and were not well removed by the coagulation-sedimentation-ozonation treatment process adopted. Copyright © 2017. Published by Elsevier B.V.

  14. Utilization of organic matter by invertebrates along an estuarine gradient in an intermittently open estuary

    NASA Astrophysics Data System (ADS)

    Lautenschlager, Agnes D.; Matthews, Ty G.; Quinn, Gerry P.

    2014-08-01

    In intermittently open estuaries, the sources of organic matter sustaining benthic invertebrates are likely to vary seasonally, particularly between periods of connection and disconnection with the ocean and higher and lower freshwater flows. This study investigated the contribution of allochthonous and autochthonous primary production to the diet of representative invertebrate species using stable isotope analysis (SIA) during the austral summer and winter (2008, 2009) in an intermittently open estuary on the south-eastern coast of Australia. As the study was conducted towards the end of a prolonged period of drought, a reduced influence of freshwater/terrestrial organic matter was expected. Sampling was conducted along an estuarine gradient, including upper, middle and lower reaches and showed that the majority of assimilated organic matter was derived from autochthonous estuarine food sources. Additionally, there was an input of allochthonous organic matter, which varied along the length of the estuary, indicated by distinct longitudinal trends in carbon and nitrogen stable isotope signatures along the estuarine gradient. Marine seaweed contributed to invertebrate diets in the lower reaches of the estuary, while freshwater/terrestrial organic matter had increased influence in the upper reaches. Suspension-feeding invertebrates derived large parts of their diet from freshwater/terrestrial material, despite flows being greatly reduced in comparison with non-drought years.

  15. Dispersion of kaolinite by dissolved organic matter from Douglas-fir roots

    Treesearch

    Philip B. Durgin; Jesse G. Chaney

    1984-01-01

    The organic constituents of water extracts from Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco var. menziesii) roots that cause kaolinite dispersion were investigated. The dissolved organic matter was fractionated according to molecular size and chemical characteristics into acids, neutrals, and bases of the hydrophilic and hydrophobic groups.

  16. Influence of dissolved organic matter character on mercury incorporation by planktonic organisms: an experimental study using oligotrophic water from Patagonian lakes

    USGS Publications Warehouse

    Diéguez, Maria C.; Queimaliños, Claudia P.; Guevara, Sergio Ribeiro; Marvin-DiPasquale, Mark C.; Cárdenas, Carolina Soto; Arribére, María A.

    2013-01-01

    Ligands present in dissolved organic matter (DOM) form complexes with inorganic divalent mercury (Hg2+) affecting its bioavailability in pelagic food webs. This investigation addresses the influence of a natural gradient of DOM present in Patagonian lakes on the bioaccumulation of Hg2+ (the prevailing mercury species in the water column of these lakes) by the algae Cryptomonas erosa and the zooplankters Brachionus calyciflorus and Boeckella antiqua. Hg2+ accumulation was studied through laboratory experiments using natural water of four oligotrophic Patagonian lakes amended with197Hg2+. The bioavailability of Hg2+ was affected by the concentration and character of DOM. The entrance of Hg2+ into pelagic food webs occurs mostly through passive and active accumulation. The incorporation of Hg2+ by Cryptomonas, up to 27% of the Hg2+ amended, was found to be rapid and dominated by passive adsorption, and was greatest when low molecular weight compounds with protein-like or small phenolic signatures prevailed in the DOM. Conversely, high molecular weight compounds with a humic or fulvic signature kept Hg2+ in the dissolved phase, resulting in the lowest Hg2+ accumulation in this algae. In Brachionus and Boeckella the direct incorporation of Hg from the aqueous phase was up to 3% of the Hg2+ amended. The dietary incorporation of Hg2+ by Boeckella exceeded the direct absorption of this metal in natural water, and was remarkably similar to the Hg2+ adsorbed in their prey. Overall, DOM concentration and character affected the adsorption of Hg2+ by algae through competitive binding, while the incorporation of Hg2+ into the zooplankton was dominated by trophic or dietary transfer.

  17. Organic Matter Application Can Reduce Copper Toxicity in Tomato Plants

    ERIC Educational Resources Information Center

    Campbell, Brian

    2010-01-01

    Copper fungicides and bactericides are often used in tomato cultivation and can cause toxic Cu levels in soils. In order to combat this, organic matter can be applied to induce chelation reactions and form a soluble complex by which much of the Cu can leach out of the soil profile or be taken up safely by plants. Organic acids such as citric,…

  18. In Situ Mapping of the Organic Matter in Carbonaceous Chondrites and Mineral Relationships

    NASA Technical Reports Server (NTRS)

    Clemett, Simon J.; Messenger, S.; Thomas-Keprta, K. L.; Ross, D. K.

    2012-01-01

    Carbonaceous chondrite organic matter represents a fossil record of reactions that occurred in a range of physically, spatially and temporally distinct environments, from the interstellar medium to asteroid parent bodies. While bulk chemical analysis has provided a detailed view of the nature and diversity of this organic matter, almost nothing is known about its spatial distribution and mineralogical relationships. Such information is nevertheless critical to deciphering its formation processes and evolutionary history.

  19. Linking geochemical processes in mud volcanoes with arsenic mobilization driven by organic matter.

    PubMed

    Liu, Chia-Chuan; Kar, Sandeep; Jean, Jiin-Shuh; Wang, Chung-Ho; Lee, Yao-Chang; Sracek, Ondra; Li, Zhaohui; Bundschuh, Jochen; Yang, Huai-Jen; Chen, Chien-Yen

    2013-11-15

    The present study deals with geochemical characterization of mud fluids and sediments collected from Kunshuiping (KSP), Liyushan (LYS), Wushanting (WST), Sinyangnyuhu (SYNH), Hsiaokunshui (HKS) and Yenshuikeng (YSK) mud volcanoes in southwestern Taiwan. Chemical constituents (cations, anions, trace elements, organic carbon, humic acid, and stable isotopes) in both fluids and mud were analyzed to investigate the geochemical processes and spatial variability among the mud volcanoes under consideration. Analytical results suggested that the anoxic mud volcanic fluids are highly saline, implying connate water as the probable source. The isotopic signature indicated that δ(18)O-rich fluids may be associated with silicate and carbonate mineral released through water-rock interaction, along with dehydration of clay minerals. Considerable amounts of arsenic in mud irrespective of fluid composition suggested possible release through biogeochemical processes in the subsurface environment. Sequential extraction of As from the mud indicated that As was mostly present in organic and sulphidic phases, and adsorbed on amorphous Mn oxyhydroxides. Volcanic mud and fluids are rich in organic matter (in terms of organic carbon), and the presence of humic acid in mud has implications for the binding of arsenic. Functional groups of humic acid also showed variable sources of organic matter among the mud volcanoes being examined. Because arsenate concentration in the mud fluids was found to be independent from geochemical factors, it was considered that organic matter may induce arsenic mobilization through an adsorption/desorption mechanism with humic substances under reducing conditions. Organic matter therefore plays a significant role in the mobility of arsenic in mud volcanoes. Copyright © 2012 Elsevier B.V. All rights reserved.

  20. Flood Pulse Influence on Export of Terrestrial Organic Matter

    NASA Astrophysics Data System (ADS)

    Dalzell, B. J.; Harbor, J. M.; Filley, T. R.

    2004-12-01

    While much attention has been placed on characterizing Terrestrial Organic Matter (TOM) export from large rivers, recent research has shown that in-stream processing of TOM in smaller streams and rivers over shorter time scales can be an important upland component of regional carbon budgets not detected at the outlets of large rivers. With predictions of climate change accompanied by more intense rainfall patterns in some areas, it is important to understand the linkage between flood events and watershed export of TOM. To this end, we have collected water samples from Big Pine Creek watershed, an 850km2 watershed located in west central Indiana. Organic carbon in dissolved, colloidal, and particulate size fractions has been described with molecular and stable carbon isotope techniques to track source, quantity, and compositional changes of TOM over changing flow conditions. Results from these samples show that flood conditions export dramatically more TOM; not only from increases in discharge, but also from increases in concentration of terrestrial organic carbon to all size fractions. While molecular biomarkers show increases in terrestrial organic matter, bulk stable carbon isotope values show that the sources of TOM do not remain constant. Rather, relative contributions from C4 plants (corn in this study area) increase during flood conditions by up to 40 percent. Finally, increases in rainfall intensity are likely to disproportionately increase organic carbon export from terrestrial systems, especially from smaller watersheds where short duration and high intensity flow events dominate annual discharge.

  1. Thallium and Silver binding to dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Benedetti, M. F.; Martin, L.; Simonucci, C.; Viollier, E.

    2017-12-01

    Silver (Ag) and thallium (Tl) are potential contaminants at the vicinity of mining sites and are harmful pollutants. Silver can be found in mine but also as released by the dissolution of Silver nanoparticles, a major new emerging contaminant. Tl is both lithophilic and calcophilic elements and found in sulphur ores (associated with lead, zinc, antimony…) or in rocks containing K-feldspar. Speciation of Ag and Tl is poorly known mainly due to their low concentrations in aquatic environments. Review of Ag and Tl geochemistry clearly shows a lack of quantitative information about interactions with natural organic matter. Organic ligands could play an important role in Ag or Tl bioavailability, chemical reactivity (adsorption or photo oxidation inhibition or catalysis) and hence geochemical transfers. Based on equilibrium between two solutions that are separated by a selectively permeable membrane, the so-called "Donnan membrane technique" (DMT) provides a measure of free ion concentrations. Analytes measurements are performed by HR-ICP-MS Element 2 (Thermo Scientific). Experimental setup allows the Donnan equilibrium to be reached after 100 and 120 hours for Tl. Experiments performed with purified natural organic matter allow calculating complexation constants in multiple pH conditions. With this work, we contribute new data and interpretations to an active debate on Ag and Tl geochemical modeling. In conclusion, this work brings a new view on risk assessment for mining activities.

  2. Composition of whole and water extractable organic matter of cattle manure affected by management practices

    USDA-ARS?s Scientific Manuscript database

    Organic matter (OM) is a major component of animal manure. In this chapter, we present two case studies on the multiple spectral features of whole and water extractable organic matter (WEOM) of cattle (beef and dairy) manure affected by differing management practices. Using wet chemistry and Fourie...

  3. Study of the influence of different organic pollutants on Cu accumulation by Halimione portulacoides

    NASA Astrophysics Data System (ADS)

    Almeida, C. Marisa R.; Claúdia Dias, A.; Mucha, Ana P.; Bordalo, A. A.; Vasconcelos, M. Teresa S. D.

    2009-12-01

    The influence of each of four organic pollutants selected from among those commonly found in coastal areas, 1,1-dichloro-2,2-bis(p-chlorophenyl) ethylene (DDE), monobutyltin (MBT), Triton X-100 and polycyclic aromatic hydrocarbons (PAHs), on Cu accumulation by Halimione portulacoides was investigated. Experiments were carried out in a laboratory setting, either in hydroponics (sediment elutriate) or in a salt marsh sediment ( Cávado River, NW Portugal) soaked in elutriate. Groups of H. portulacoides were exposed to media for 6 days spiked with 10 mg/L Cu(II) and with one of the selected pollutants, at an environmentally realistic concentration. DDE and MBT did not cause any major change on Cu accumulation by H. portulacoides, whereas PAHs slightly increased accumulation only in hydroponics i.e. in the absence of sediment. On the other hand, the non-ionic surfactant Triton X-100 markedly favoured Cu accumulation on plant roots both in the presence and absence of sediment. The addition of DDE, MBT and Triton X-100 also favoured Cu solubility from sediments. Therefore, the simultaneous presence of pollutants from different nature (inorganic and organic) in the estuarine environment may result in a composition of water column, pore water, sediment or biota different of that expected considering the effect of each individual pollutant.

  4. Chemical characterization of detrital sugar chains with peptides in oceanic surface particulate organic matter

    NASA Astrophysics Data System (ADS)

    Tsukasaki, A.; Nishida, T.; Tanoue, E.

    2016-02-01

    For better understanding of the dynamics of organic matter in the ocean interior, particulate organic matter (POM) in oceanic surface water is a key material as a starting material in food chain and biological carbon pump, and the source of dissolved organic matter. POM consists of a mixture of non-living POM (detritus) and small amount of living POM (organisms). Particulate combined amino acids (PCAAs) are one of the major components of POM and the most important source of nitrogen and carbon for heterotrophic organisms in marine environments. In our previous studies of molecular-level characterization of PCAAs using electrophoretic separation (SDS-PAGE: sodium dodecyl sulfate-polyacrylamide gel electrophoresis) with specific detection of protein/peptide and sugar chains, we reported that most of PCAAs existed as small-sized peptide chains with carbohydrate-rich remnants. Although carbohydrates are one of the major carbon components of POM, the details of molecular-level structures including sugar chains are unknown. In this study, we applied electrophoretic separation for sugar chains (FACE: fluorophore-assisted carbohydrate electrophoresis) to the POM samples collected from the surface water of the Pacific Ocean. The results showed that sugar chains with various degree of polymerization were detected in POM. The possible roles of such sugar chains in marine biogeochemical cycle of organic matter are discussed in the presentation.

  5. Sea cucumbers reduce chromophoric dissolved organic matter in aquaculture tanks

    PubMed Central

    Sadeghi-Nassaj, Seyed Mohammad; Catalá, Teresa S.; Álvarez, Pedro A.

    2018-01-01

    Background Mono-specific aquaculture effluents contain high concentrations of nutrients and organic matter, which affect negatively the water quality of the recipient ecosystems. A fundamental feature of water quality is its transparency. The fraction of dissolved organic matter that absorbs light is named chromophoric dissolved organic matter (CDOM). A sustainable alternative to mono-specific aquaculture is the multitrophic aquaculture that includes species trophically complementary named “extractive” species that uptake the waste byproducts. Sea cucumbers are recognized as efficient extractive species due to the consumption of particulate organic matter (POM). However, the effects of sea cucumbers on CDOM are still unknown. Methods During more than one year, we monitored CDOM in two big-volume tanks with different trophic structure. One of the tanks (−holothurian) only contained around 810 individuals of Anemonia sulcata, whereas the other tank (+holothurian) also included 90 individuals of Holothuria tubulosa and Holothuria forskali. We routinely analyzed CDOM absorption spectra and determined quantitative (absorption coefficients at 325 nm) and qualitative (spectral slopes) optical parameters in the inlet waters, within the tanks, and in their corresponding effluents. To confirm the time-series results, we also performed three experiments. Each experiment consisted of two treatments: +holothurians (+H) and –holothurians (−H). We set up three +H tanks with 80 individuals of A. sulcata and 10 individuals of H. tubulosa in each tank and four –H tanks that contained only 80 individuals of A. sulcata. Results In the time-series, absorption coefficients at 325 nm (a325) and spectral slopes from 275 to 295 nm (S275−295) were significantly lower in the effluent of the +holothurian tank (average: 0.33 m−1 and 16 µm−1, respectively) than in the effluent of the −holothurian tank (average: 0.69 m−1 and 34 µm−1, respectively), the former being

  6. Effects of Natural Organic Matter on Stability, Transport and Deposition of Engineered Nano-particles in Porous Media

    EPA Science Inventory

    The interaction of nano-particles and organic substances, like natural organic matter, could have significant influence on the fate, transport and bioavailability of toxic substances. Natural organic matter (NOM) is a mixture of chemically complex polyelectrolytes with varying m...

  7. Extending the analytical window for water-soluble organic matter in sediments by aqueous Soxhlet extraction

    NASA Astrophysics Data System (ADS)

    Schmidt, Frauke; Koch, Boris P.; Witt, Matthias; Hinrichs, Kai-Uwe

    2014-09-01

    Dissolved organic matter (DOM) in marine sediments is a complex mixture of thousands of individual constituents that participate in biogeochemical reactions and serve as substrates for benthic microbes. Knowledge of the molecular composition of DOM is a prerequisite for a comprehensive understanding of the biogeochemical processes in sediments. In this study, interstitial water DOM was extracted with Rhizon samplers from a sediment core from the Black Sea and compared to the corresponding water-extractable organic matter fraction (<0.4 μm) obtained by Soxhlet extraction, which mobilizes labile particulate organic matter and DOM. After solid phase extraction (SPE) of DOM, samples were analyzed for the molecular composition by Fourier Transform Ion-Cyclotron Resonance Mass Spectrometry (FT-ICR MS) with electrospray ionization in negative ion mode. The average SPE extraction yield of the dissolved organic carbon (DOC) in interstitial water was 63%, whereas less than 30% of the DOC in Soxhlet-extracted organic matter was recovered. Nevertheless, Soxhlet extraction yielded up to 4.35% of the total sedimentary organic carbon, which is more than 30-times the organic carbon content of the interstitial water. While interstitial water DOM consisted primarily of carbon-, hydrogen- and oxygen-bearing compounds, Soxhlet extracts yielded more complex FT-ICR mass spectra with more peaks and higher abundances of nitrogen- and sulfur-bearing compounds. The molecular composition of both sample types was affected by the geochemical conditions in the sediment; elevated concentrations of HS- promoted the early diagenetic sulfurization of organic matter. The Soxhlet extracts from shallow sediment contained specific three- and four-nitrogen-bearing molecular formulas that were also detected in bacterial cell extracts and presumably represent proteinaceous molecules. These compounds decreased with increasing sediment depth while one- and two-nitrogen-bearing molecules increased

  8. Characteristics of DO, organic matter, and ammonium profile for practical-scale DHS reactor under various organic load and temperature conditions.

    PubMed

    Nomoto, Naoki; Ali, Muntjeer; Jayaswal, Komal; Iguchi, Akinori; Hatamoto, Masashi; Okubo, Tsutomu; Takahashi, Masanobu; Kubota, Kengo; Tagawa, Tadashi; Uemura, Shigeki; Yamaguchi, Takashi; Harada, Hideki

    2018-04-01

    Profile analysis of the down-flow hanging sponge (DHS) reactor was conducted under various temperature and organic load conditions to understand the organic removal and nitrification process for sewage treatment. Under high organic load conditions (3.21-7.89 kg-COD m -3  day -1 ), dissolved oxygen (DO) on the upper layer of the reactor was affected by organic matter concentration and water temperature, and sometimes reaches around zero. Almost half of the COD Cr was removed by the first layer, which could be attributed to the adsorption of organic matter on sponge media. After the first layer, organic removal proceeded along the first-order reaction equation from the second to the fourth layers. The ammoniacal nitrogen removal ratio decreased under high organic matter concentration (above 100 mg L -1 ) and low DO (less than 1 mg L -1 ) condition. Ammoniacal nitrogen removal proceeded via a zero-order reaction equation along the reactor height. In addition, the profile results of DO, COD Cr , and NH 3 -N were different in the horizontal direction. Thus, it is thought the concentration of these items and microbial activities were not in a uniform state even in the same sponge layer of the DHS reactor.

  9. Enzymatic regulation of organic matter metabolism in Siberia's Kolyma River Watershed

    NASA Astrophysics Data System (ADS)

    Mann, P. J.; Sobczak, W.; Vonk, J. E.; Davydova, A.; Schade, J.; Bulygina, E.; Davydov, S.; Zimov, N.; Holmes, R. M.

    2012-04-01

    Arctic soils contain vast amounts of ancient organic carbon stored in permafrost that can be unlocked and remobilised via permafrost thaw and bacterial degradation. The mechanisms regulating the release and fate of this carbon are important to understand if we wish to predict future changes in the global carbon cycle. Microbial communities release enzymes into the environment (ectoenzymes) as a means of degrading organic matter and to acquire carbon, nitrogen and phosphorus for assimilation. We measured potential activities of a suite of ectoenzymes within surface waters collected from a range of streams and rivers throughout the Kolyma River basin, Siberia. Ectoenzyme activities were additionally measured in Kolyma river waters collected at three distinct periods of the hydrograph (under-ice, freshet and summer conditions). Seven enzymes were studied allowing bacterial requirements for a wide range of compounds including lignin, carbohydrates, proteins and cellulose to be assessed. Concurrent measurements of DOC lability were conducted using biological oxygen demand assays conducted over 5 days (BOD). Phenol oxidase activity was found to strongly correlate to BOD (r2=0.68) and stream CO2 concentration (r2=0.76) across all of the study sites, suggesting the rate of phenolic degradation may be a controlling factor in organic carbon metabolism. The activity rate in ectoenzymes that catalyze phosphate, lignin and carbon substrates varied significantly within the Kolyma river over the hydrograph, suggesting that seasonal changes in organic matter composition may also shift the limiting resource for bacterial degradation. Extremely high activity rates in ectoenzymes that catalyze lignin, chitin, cellulose and proteins were measured in waters draining permafrost ice complexes. It is apparent that organic carbon is continually processed throughout the stream network, and that its ultimate fate is linked to organic matter composition. We demonstrate that organic carbon

  10. Physicochemical properties and stability of thousand-year-old soil organic matter in boreal paleopodzols

    NASA Astrophysics Data System (ADS)

    Feng, Wen-Ting; Klaminder, Jonatan; Boily, Jean-Francois

    2013-04-01

    Soil organic matter (SOM) stabilization mechanisms are key to predict carbon (C) cycle responses to climate change, especially in critically sensitive ecosystems, such as the arctic and boreal ecosystems of Scandinavia (IPCC 2007). Interactions between organic matter and soil mineral components can be of particular importance. Their impacts on SOM stability are however not fully resolved. In this study, we present an exhaustive physicochemical characterization of SOM and soil mineral components of boreal paleopodzols formed over several thousands of years in northern Sweden. We also test the hypothesis that old SOM in these environments is strongly associated to mineral surfaces. This work was specifically focused on two relict podzolic profiles capped by more recently developed podzolic profile. Each of the three profiles consisted of a well developed E-horizon and of an underlying B-horizon enriched in secondary weathering products. Soil C age was greater with increasing depth, with the deepest horizon dating from the mid-Holocene. Organic C loadings, expressed in terms of C mass per mineral surface area, decreased from 0.52 to 0.31 mg C m-2 from deep to the deepest B horizons. A monolayer coating model could thus be used to suggest that C was mainly bonded to unsaturated mineral surfaces. Scanning electron microscopy and energy dispersive X-ray spectroscopy showed that, unlike in younger B-horizon, the oldest C of the deepest B-horizon did not accumulate in clusters. It was instead distributed more homogenously at the micrometer scale with soil mineral particles. X-ray photoelectron spectroscopy moreover showed that the top 1-10 nm of the mineral surfaces contained proportions of aliphatic-C, ether/alcohol-C, and amide-C that varied greatly amongst the three B horizons but not among the three E horizons. Different composition of SOM remained in deep E and B horizons, thereby suggesting a selective SOM preservation process that is controlled by the properties of

  11. Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon

    PubMed Central

    Gao, Lei; Zhao, Shengjie; Lu, Xuqiang; He, Nan; Zhu, Hongju; Dou, Junling

    2018-01-01

    Soluble sugars and organic acids are important components of fruit flavor and have a strong impact on the overall organoleptic quality of watermelon (Citrullus lanatus) fruit. Several studies have analyzed the expression levels of the genes related to soluble sugar accumulation and the dynamic changes in their content during watermelon fruit development and ripening. Nevertheless, to date, there have been no reports on the organic acid content in watermelon or the genes regulating their synthesis. In this study, the soluble sugars and organic acids in watermelon were measured and a comparative transcriptome analysis was performed to identify the key genes involved in the accumulation of these substances during fruit development and ripening. The watermelon cultivar ‘203Z’ and its near-isogenic line (NIL) ‘SW’ (in the ‘203Z’ background) were used as experimental materials. The results suggested that soluble sugar consist of fructose, glucose and sucrose while malic-, citric-, and oxalic acids are the primary organic acids in watermelon fruit. Several differentially expressed genes (DEGs) related to soluble sugar- and organic acid accumulation and metabolism were identified. These include the DEGs encoding raffinose synthase, sucrose synthase (SuSy), sucrose-phosphate synthase (SPSs), insoluble acid invertases (IAI), NAD-dependent malate dehydrogenase (NAD-cyt MDH), aluminum-activated malate transporter (ALMT), and citrate synthase (CS). This is the first report addressing comparative transcriptome analysis via NILs materials in watermelon fruit. These findings provide an important basis for understanding the molecular mechanism that leads to soluble sugar and organic acid accumulation and metabolism during watermelon fruit development and ripening. PMID:29324867

  12. Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon.

    PubMed

    Gao, Lei; Zhao, Shengjie; Lu, Xuqiang; He, Nan; Zhu, Hongju; Dou, Junling; Liu, Wenge

    2018-01-01

    Soluble sugars and organic acids are important components of fruit flavor and have a strong impact on the overall organoleptic quality of watermelon (Citrullus lanatus) fruit. Several studies have analyzed the expression levels of the genes related to soluble sugar accumulation and the dynamic changes in their content during watermelon fruit development and ripening. Nevertheless, to date, there have been no reports on the organic acid content in watermelon or the genes regulating their synthesis. In this study, the soluble sugars and organic acids in watermelon were measured and a comparative transcriptome analysis was performed to identify the key genes involved in the accumulation of these substances during fruit development and ripening. The watermelon cultivar '203Z' and its near-isogenic line (NIL) 'SW' (in the '203Z' background) were used as experimental materials. The results suggested that soluble sugar consist of fructose, glucose and sucrose while malic-, citric-, and oxalic acids are the primary organic acids in watermelon fruit. Several differentially expressed genes (DEGs) related to soluble sugar- and organic acid accumulation and metabolism were identified. These include the DEGs encoding raffinose synthase, sucrose synthase (SuSy), sucrose-phosphate synthase (SPSs), insoluble acid invertases (IAI), NAD-dependent malate dehydrogenase (NAD-cyt MDH), aluminum-activated malate transporter (ALMT), and citrate synthase (CS). This is the first report addressing comparative transcriptome analysis via NILs materials in watermelon fruit. These findings provide an important basis for understanding the molecular mechanism that leads to soluble sugar and organic acid accumulation and metabolism during watermelon fruit development and ripening.

  13. Thermal alterations of organic matter in coal wastes from Upper Silesia, Poland

    NASA Astrophysics Data System (ADS)

    Misz-Kennan, Magdalena

    2010-01-01

    Self-heating and self-combustion are currently taking place in some coal waste dumps in the Upper Silesian Coal Basin, Poland, e.g. the dumps at Rymer Cones, Starzykowiec, and the Marcel Coal Mine, all in the Rybnik area. These dumps are of similar age and self-heating and combustion have been occurring in all three for many years. The tools of organic petrography (maceral composition, rank, etc.), gas chromatography-mass spectrometry, and proximate and ultimate analysis are used to investigate the wastes. Organic matter occurs in quantities up to 85 vol.%, typically a few to several vol.%, in the wastes. All three maceral groups (vitrinite, liptinite, and inertinite) are present as unaltered and variously-altered constituents associated with newly-formed petrographic components (bitumen expulsions, pyrolytic carbon). The predominant maceral group is vitrinite with alterations reflected in the presence of irregular cracks, oxidation rims and, rarely, devolatilisation pores. In altered wastes, paler grey-vitrinite and/or coke dominates. The lack of plasticity, the presence of paler-coloured particles, isotropic massive coke, dispersed coked organic matter, and expulsions of bitumens all indicate that heating was slow and extended over a long time. Macerals belonging to other groups are present in unaltered form or with colours paler than the colours of the parent macerals. Based on the relative contents of organic compounds, the most important groups of these identified in the wastes are n-alkanes, acyclic isoprenoids, hopanes, polycyclic aromatic hydrocarbons (PAHs) and their derivatives, phenol and its derivatives. These compounds occur in all wastes except those most highly altered where they were probably destroyed by high temperatures. These compounds were generated mainly from liptinite-group macerals. Driven by evaporation and leaching, they migrated within and out of the dump. Their presence in some wastes in which microscopically visible

  14. Effect of water regimes and organic matters on transport of arsenic in summer rice (Oryza sativa L.).

    PubMed

    Rahaman, Sefaur; Sinha, Ashim Chandra; Mukhopadhyay, Dibyendu

    2011-01-01

    The arsenic contamination in soil-water-plant systems is a major concern of where, the groundwater is being contaminated with arsenic (above 0.01 mg/L) in the Indian subcontinent. The study was conducted with organic matter to find out the reducing effect on arsenic load to rice (cv. Khitish). It was observed that intermittent ponding reduced arsenic uptake (23.33% in root, 13.84% in shoot and 19.84% in leaf) at panicle initiation stage, instead of continuous ponding. A decreasing trend of arsenic accumulation (root > straw > husk > whole grain > milled grain) was observed in different plant parts at harvest. Combined applications of lathyrus + vermicompost + poultry manure reduced arsenic transport in plant parts (root, straw, husk, whole grains and milled grain) which was significantly at par (p > 0.05) with chopped rice straw (5 tons/ha) + lathyrus green manuring (5 tons/ha) in comparison to control and corresponding soils. A significant negative correlation of arsenic with phosphorus (grain P with arsenic in different parts R2= 0.627-0.726 at p > 0.01) was observed. Similarly, soil arsenic had a negative correlation with soil available phosphorus (R2 = 0.822 at p > 0.001) followed by soil nitrogen (R2 = 0.762 at p > 0.01) and soil potassium (R2 = 0.626 at p > 0.01). Hence, effective management of contaminated irrigation water along with organic matter could reduce the arsenic build up to plants and soil.

  15. Solid-state 13C NMR studies of dissolved organic matter in pore waters from different depositional environments

    USGS Publications Warehouse

    Orem, W.H.; Hatcher, P.G.

    1987-01-01

    Dissolved organic matter (DOM) in pore waters from sediments of a number of different depositional environments was isolated by ultrafiltration using membranes with a nominal molecular weight cutoff of 500. This > 500 molecular weight DOM represents 70-98% of the total DOM in these pore waters. We determined the gross chemical structure of this material using both solid-state 13C nuclear magnetic resonance spectroscopy and elemental analysis. Our results show that the DOM in these pore waters appears to exist as two major types: one type dominated by carbohydrates and paraffinic structures and the second dominated by paraffinic and aromatic structures. We suggest that the dominance of one or the other structural type of DOM in the pore water depends on the relative oxidizing/reducing nature of the sediments as well as the source of the detrital organic matter. Under dominantly anaerobic conditions carbohydrates in the sediments are degraded by bacteria and accumulate in the pore water as DOM. However, little or no degradation of lignin occurs under these conditions. In contrast, sediments thought to be predominantly aerobic in character have DOM with diminished carbohydrate and enhanced aromatic character. The aromatic structures in the DOM from these sediments are thought to arise from the degradation of lignin. The large amounts of paraffinic structures in both types of DOM may be due to the degradation of unidentified paraffinic materials in algal or bacterial remains. ?? 1987.

  16. Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter.

    PubMed

    Sun, Ruibo; Dsouza, Melissa; Gilbert, Jack A; Guo, Xisheng; Wang, Daozhong; Guo, Zhibin; Ni, Yingying; Chu, Haiyan

    2016-12-01

    Organic matter application is a widely used practice to increase soil carbon content and maintain soil fertility. However, little is known about the effect of different types of organic matter, or the input of exogenous species from these materials, on soil fungal communities. In this study, fungal community composition was characterized from soils amended with three types of organic matter over a 30-year fertilization experiment. Chemical fertilization significantly changed soil fungal community composition and structure, which was exacerbated by the addition of organic matter, with the direction of change influenced by the type of organic matter used. The addition of organic matter significantly increased soil fungal richness, with the greatest richness achieved in soils amended with pig manure. Importantly, following addition of cow and pig manure, fungal taxa associated with these materials could be found in the soil, suggesting that these exogenous species can augment soil fungal composition. Moreover, the addition of organic matter decreased the relative abundance of potential pathogenic fungi. Overall, these results indicate that organic matter addition influences the composition and structure of soil fungal communities in predictable ways. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

  17. Investigation of water-soluble organic matter extracted from shales during leaching experiments

    NASA Astrophysics Data System (ADS)

    Zhu, Yaling; Vieth-Hillebrand, Andrea; Wilke, Franziska D. H.; Horsfield, Brian

    2017-04-01

    The huge volumes and unknown composition of flowback and produced waters cause major public concerns about the environmental and social compatibility of hydraulic fracturing and the exploitation of gas from unconventional reservoirs. Flowback and produced waters contain not only residues of fracking additives but also chemical species that are dissolved from the shales themselves during fluid-rock interaction. Knowledge of the composition, size and structure of dissolved organic carbon (DOC) as well as the main controls on the release of DOC are a prerequisite for a better understanding of these interactions and its effects on composition of flowback and produced water. Black shales from four different geological settings and covering a maturity range Ro = 0.3-2.6% were extracted with deionized water. The DOC yields were found to decrease rapidly with increasing diagenesis and remain low throughout catagenesis. Four DOC fractions have been qualitatively and quantitatively characterized using size-exclusion chromatography. The concentrations of individual low molecular weight organic acids (LMWOA) decrease with increasing maturity of the samples except for acetate extracted from the overmature Posidonia shale, which was influenced by hydrothermal brines. The oxygen content of the shale organic matter also shows a significant influence on the release of organic acids, which is indicated by the positive trend between oxygen index (OI) and the concentrations of formate and acetate. Based on our experiments, both the properties of the organic matter source and the thermal maturation progress of the shale organic matter significantly influence the amount and quality of extracted organic compounds during the leaching experiments.

  18. Multiple sources and extensive degradation of terrestrial sedimentary organic matter across an energetic, wide continental shelf

    NASA Astrophysics Data System (ADS)

    Zhu, Chun; Wagner, Thomas; Pan, Jian-Ming; Pancost, Richard D.

    2011-08-01

    The fate of organic carbon in marine sediments is closely linked to atmospheric CO2 concentrations and thus to climate variability over geological time scales. The East China Sea (ECS) is characterized not only by massive terrestrial organic matter (TOM) inputs from the Yangtze (Changjiang) River but also by a shallow (<130 m) and broad (>500 km) continental shelf with widespread relict sands, such that it is distinct from other continental margins. We examine the diagenesis of sedimentary TOM and the impacts of relict sands on TOM in the ECS. The results reveal that bulk δ13Corg values correlate with terrestrial biomarker concentrations in muddy and accumulative areas; in contrast, depleted δ13Corg values around -24.5‰ co-occur with almost absent terrestrial biomarkers in sandy/erosional areas. We suggest that mixing of contemporary TOM and marine OM dominates in the muddy/accumulative shelf areas, whereas a putative relict OM, associated with relict sands, appears to be significant in many sandy/erosional shelf areas. Given the global occurrence of relict sands, a persistent amount of relict OC (e.g., 0.1%) may complicate TOM budget calculations. In addition, our observations reveal that TOM is extensively partitioned and degraded in the estuary and continues to be partitioned and degraded during the along-shore and across-shelf transport, which is reflected by decreases in terrestrial biomarker concentrations and increases in degradation indices. This study highlights the unique and dynamic role of shallow and wide continental shelves with massive relict sands on TOM cycling.

  19. Phytoplankton Do Not Produce Carbon-Rich Organic Matter in High CO2 Oceans

    NASA Astrophysics Data System (ADS)

    Kim, Ja-Myung; Lee, Kitack; Suh, Young-Sang; Han, In-Seong

    2018-05-01

    The ocean is a substantial sink for atmospheric carbon dioxide (CO2) released as a result of human activities. Over the coming decades the dissolved inorganic C concentration in the surface ocean is predicted to increase, which is expected to have a direct influence on the efficiency of C utilization (consumption and production) by phytoplankton during photosynthesis. Here we evaluated the generality of C-rich organic matter production by examining the elemental C:N ratio of organic matter produced under conditions of varying pCO2. The data used in this analysis were obtained from a series of pelagic in situ pCO2 perturbation studies that were performed in the diverse ocean regions and involved natural phytoplankton assemblages. The C:N ratio of the resulting particulate and dissolved organic matter did not differ across the range of pCO2 conditions tested. In particular, the ratio for particulate organic C and N was found to be 6.58 ± 0.05, close to the theoretical value of 6.6.

  20. Irradiation of organic matter by uranium decay in the Alum Shale, Sweden

    NASA Astrophysics Data System (ADS)

    Lewan, M. D.; Buchardt, B.

    1989-06-01

    The Alum Shale of Sweden contains black shales with anomalously high uranium concentrations in excess of 100 ppm. Syngenetic or early diagenetic origin of this uranium indicates that organic matter within these shales has been irradiated by decaying uranium for approximately 500 Ma. Radiation-induced polymerization of alkanes through a free-radical cross-linking mechanism appears to be responsible for major alterations within the irradiated organic matter. Specific radiation-induced alterations include generation of condensate-like oils at reduced yields from hydrous pyrolysis experiments, decrease in atomic H/C ratios of kerogens, decrease in bitumen/organic-carbon ratios, and a relative increase in low-molecular weight triaromatic steroid hydrocarbons. Conversely, stable carbon isotopes of kerogens, reflectance of vitrinite-like macerais, oil-generation kinetics, and isomerization of 20R to 20S αα C 29-steranes were not affected by radiation. The radiation dosage needed to cause the alterations observed in the Alum Shale has been estimated to be in excess of 10 5 Mrads with respect to organic carbon. This value is used to estimate the potential for radiation damage to thermally immature organic matter in black shales through the geological rock record. High potential for radiation damage is not likely in Cenozoic and Mesozoic black shales but becomes more likely in lower Paleozoic and Precambrian black shales.

  1. Assessment of soil organic matter persistence under different land uses applying a physical fractionation procedure

    NASA Astrophysics Data System (ADS)

    Giannetta, Beatrice; Plaza, César; López-de-Sá, Esther G.; Vischetti, Costantino; Zaccone, Claudio

    2017-04-01

    The understanding of the mechanisms involved in the build-up of soil organic matter (SOM) pools with long residence time is tightly linked to the comprehension of C dynamics. Organo-mineral associations are known to be strongly correlated with the accumulation of selective preserved C forms. Adsorption to minerals, as well as occlusion within aggregates, may affect SOM protection in different ways depending on its molecular structure and pedo-climatic conditions. In this research, we investigated changes in quantity and quality of SOM pools characterized by different protection mechanisms in coniferous and broadleaved forest soils, grassland soils, technosols and an agricultural soil with different organic amendments, in order to evaluate the influence of both land use and organic matter nature on physical and/or chemical stabilization of SOM. In particular, free (FR), intra-macroaggregate (MA), intra-microaggregate (MI), and mineral-associated (Min) fractions were separated in order to define physical and chemical mechanisms responsible for the SOM protection against degradation. All these SOM fractions were analyzed for organic C and total N concentration, and their stability assessed by thermogravimetric analysis (TD-TGA). Preliminary data show that, for all land uses, most of the organic C (40-60%) is found in the Min pool, followed by FR (20-40%)>MI MA. With the only exception of the FR, no significant correlations were found between the C/N ratio and a thermal stability index (H550-400/400-250) of each fraction; at the same time, a highly significant and positive correlation was found between these two parameters in all fractions isolated from agricultural soils. In particular, the thermal stability index measured in all Min fractions may be related to the more marked presence of labile compounds in this pool relative to recalcitrant compounds. Conversely, FR OM could not always represent a fresh and readily decomposable fraction.Furthermore, OM associated

  2. Storage and export of organic matter in a headwater stream: responses to long-term detrital manipulations

    Treesearch

    Sue L. Eggert; J. Bruce Wallace; Judy L. Meyer; Jackson R. Webster

    2012-01-01

    Riparian habitats provide organic matter inputs that influence stream biota and ecosystem processes in forested watersheds. Over a 13-yr period, we examined the effects of litter exclusion, small- and large-wood removal, and the addition of leaf species of varying detrital quality on organic matter standing crop and export of organic and inorganic particles in a high-...

  3. Investigating organic matter in Fanno Creek, Oregon, Part 3 of 3: identifying and quantifying sources of organic matter to an urban stream

    USGS Publications Warehouse

    Goldman, Jami H.; Rounds, Stewart A.; Keith, Mackenzie K.; Sobieszczyk, Steven

    2014-01-01

    The sources, transport, and characteristics of organic matter (OM) in Fanno Creek, an urban stream in northwest Oregon, were assessed and quantified using: (1) optical instruments to calculate transported loads of dissolved, particulate, and total organic carbon, (2) fluorescence spectroscopy and stable isotope ratios (δ13C, δ15N) to elucidate sources and chemical properties of OM throughout the basin, and (3) synoptic sampling to investigate seasonal and hydrologic variations in the characteristics and quantity of OM. Results from this study indicate that of the roughly 324 (±2.9%) metric tons (tonnes, t) of organic carbon exported from the basin during March 2012 to March 2013, most of the OM in Fanno Creek was dissolved (72%) and was present year-round at concentrations exceeding 3–4 milligrams of carbon per liter, whereas particulate carbon typically was mobilized and transported only by higher-flow conditions. The isotopic and fluorescence characteristics of Fanno Creek OM indicate that the carbon originates primarily from terrestrial inputs, most likely riparian vegetative biomass that enters the stream via litterfall and overland transport and then travels through the system episodically as a result of hydrologic processes. The amount of OM exported from the Fanno Creek drainage over the course of a year in this study is consistent with previous estimates of annual riparian litterfall in or near the creek. Although the creek channel is actively eroding, most bank material has too little OM for that to be a dominant source of OM to the stream. Fluorescence data revealed that the OM contains primarily humic and fulvic-like components that become less aromatic as the OM moves downstream. The most significant seasonal variation was associated with OM transported in the first storms of the autumn season (fall flush). That material was characteristically different, with a larger fraction of microbially derived OM that probably resulted from an accumulation of

  4. SPRUCE Advanced Molecular Techniques Provide a Rigorous Method for Characterizing Organic Matter Quality in Complex Systems: Supporting Data

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wilson, Rachel M; Tfaily, Malak M

    These data are provided in support of the Commentary, Advanced molecular techniques provide a rigorous method for characterizing organic matter quality in complex systems, Wilson and Tfaily (2018). Measurement results demonstrate that optical characterization of peatland dissolved organic matter (DOM) may not fully capture classically identified chemical characteristics and may, therefore, not be the best measure of organic matter quality.

  5. Role of effluent organic matter in the photochemical degradation of compounds of wastewater origin.

    PubMed

    Bodhipaksha, Laleen C; Sharpless, Charles M; Chin, Yu-Ping; MacKay, Allison A

    2017-03-01

    The photoreactivity of treated wastewater effluent organic matter differs from that of natural organic matter, and the indirect phototransformation rates of micropollutants originating in wastewater are expected to depend on the fractional contribution of wastewater to total stream flow. Photodegradation rates of four common compounds of wastewater origin (sulfamethoxazole, sulfadimethoxine, cimetidine and caffeine) were measured in river water, treated municipal wastewater effluent and mixtures of both to simulate various effluent-stream water mixing conditions that could occur in environmental systems. Compounds were chosen for their unique photodegradation pathways with the photochemically produced reactive intermediates, triplet-state excited organic matter ( 3 OM*), singlet oxygen ( 1 O 2 ), and hydroxyl radicals (OH). For all compounds, higher rates of photodegradation were observed in effluent relative to upstream river water. Sulfamethoxazole degraded primarily via direct photolysis, with some contribution from OH and possibly from carbonate radicals and other unidentified reactive intermediates in effluent-containing samples. Sulfadimethoxine also degraded mainly by direct photolysis, and natural organic matter appeared to inhibit this process to a greater extent than predicted by light screening. In the presence of effluent organic matter, sulfadimethoxine showed additional reactions with OH and 1 O 2 . In all water samples, cimetidine degraded by reaction with 1 O 2 (>95%) and caffeine by reaction with OH (>95%). In river water mixtures, photodegradation rate constants for all compounds increased with increasing fractions of effluent. A conservative mixing model was able to predict reaction rate constants in the case of hydroxyl radical reactions, but it overestimated rate constants in the case of 3 OM* and 1 O 2 pathways. Finally, compound degradation rate constants normalized to the rate of light absorption by water correlated with E 2 /E 3 ratios

  6. Water repellency and organic matter composition after a wildfire: new insights using thermal analysis

    NASA Astrophysics Data System (ADS)

    Neris, Jonay; Doerr, Stefan

    2014-05-01

    Water repellency, a key parameter in the hydrological and ecological behaviour of ecosystems, is one of the main soil properties affected by wildfire through its impact on organic matter (Shakesby and Doerr, 2006). This study examines the link between post-fire organic matter quantity and composition, soil water repellency and related hydrological properties in order to (i) examine the influence of different organic matter pools on soil hydrological properties and (ii) to explore the use of these links as a proxy for soil hydrological impacts of fire. Soil samples from five fire-affected burned and unburned control sites in Andisols terrain in Tenerife, previously studied for water repellency and hydrology-related properties (Neris et al., 2013), were selected and thermogravimetric analysis (TG) carried out to evaluate fire impacts on their organic matter composition. A decrease in the organic matter quantity as well as in the relative amount of the labile organic matter pool and an increase in the recalcitrant and/or refractory pool depending was observed in the burned soils. TG data, using 10 ºC temperature range steps, allowed reasonable prediction of soil properties evaluated, with R2 ranging from 0.4 to 0.8. The labile pool showed a broad and positive influence on most soil properties evaluated, whereas the refractory pool and the dehydration range affected the surface water holding capacity and water repellency. These results, in conjunction with the simplicity of the TG analysis suggest that, following a calibration step to link TG data to the site-specific post-fire soil properties, this method may be a useful tool for rapid and cost-effective soil hydrological response evaluation after the fire. References Neris, J., Tejedor, M., Fuentes, J., Jiménez, C., 2013. Infiltration, runoff and soil loss in Andisols affected by forest fire (Canary Islands, Spain). Hydrological Processes 27(19), 2814-2824. Shakesby, R.A., Doerr, S.H., 2006. Wildfire as a

  7. Characterization and source identification of organic matter in view of land uses and heavy rainfall in the Lake Shihwa, Korea.

    PubMed

    Lee, Yeonjung; Hur, Jin; Shin, Kyung-Hoon

    2014-07-15

    The characteristics and sources of organic matter in water of the Lake Shihwa, which receives inputs from rural, urban, and industrial areas, were evaluated by examining the biodegradable organic carbon concentration, fluorescence spectra, and carbon and nitrogen isotope ratios, especially during rainy season and dry season. The organic matter transported from rural areas was of refractory nature, while that of industrial origin decomposed rapidly. As compared to the dry season, the organic matter in the rainy season was characterized by a reduced labile fraction. During the dry season, the autochthonous organic matter dominated in the lake, however, the contributions of allochthonous organic sources by industrial and rural areas significantly increased at rainy season. This investigation revealed that the transport of organic matter of anthropogenic origin to the Lake Shihwa was mainly influenced by heavy rainfall. Moreover, each anthropogenic source could differently influence the occurrence of organic matter in water of the Lake Shihwa. Copyright © 2014 Elsevier Ltd. All rights reserved.

  8. Storage and Bioavailability of Molybdenum in Soils Increased by Organic Matter Complexation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wichard, T.; Mishra, B; Myneni, S

    2009-01-01

    The micronutrient molybdenum is a necessary component of the nitrogen-fixing enzyme nitrogenase1, 2. Molybdenum is very rare in soils, and is usually present in a highly soluble form, making it susceptible to leaching3, 4. However, it is generally thought that molybdenum attaches to mineral surfaces in acidic soils; this would prevent its escape into the groundwater, but would also impede uptake by microbes3. Here we use X-ray spectroscopy to examine the chemical speciation of molybdenum in soil samples from forests in Arizona and New Jersey. We show that in the leaf litter layer, most of the molybdenum forms strong complexesmore » with plant-derived tannins and tannin-like compounds; molybdenum binds to these organic ligands across a wide pH range. In deeper soils, molybdenum binds to both iron oxides and natural organic matter. We suggest that the molybdenum bound to organic matter can be captured by small complexing agents that are released by nitrogen-fixing bacteria; the molybdenum can then be incorporated into nitrogenase. We conclude that the binding of molybdenum to natural organic matter helps prevent leaching of molybdenum, and is thus a critical step in securing new nitrogen in terrestrial ecosystems.« less

  9. Transport of organic contaminants in subsoil horizons and effects of dissolved organic matter related to organic waste recycling practices.

    PubMed

    Chabauty, Florian; Pot, Valérie; Bourdat-Deschamps, Marjolaine; Bernet, Nathalie; Labat, Christophe; Benoit, Pierre

    2016-04-01

    Compost amendment on agricultural soil is a current practice to compensate the loss of organic matter. As a consequence, dissolved organic carbon concentration in soil leachates can be increased and potentially modify the transport of other solutes. This study aims to characterize the processes controlling the mobility of dissolved organic matter (DOM) in deep soil layers and their potential impacts on the leaching of organic contaminants (pesticides and pharmaceutical compounds) potentially present in cultivated soils receiving organic waste composts. We sampled undisturbed soil cores in the illuviated horizon (60-90 cm depth) of an Albeluvisol. Percolation experiments were made in presence and absence of DOM with two different pesticides, isoproturon and epoxiconazole, and two pharmaceutical compounds, ibuprofen and sulfamethoxazole. Two types of DOM were extracted from two different soil surface horizons: one sampled in a plot receiving a co-compost of green wastes and sewage sludge applied once every 2 years since 1998 and one sampled in an unamended plot. Results show that DOM behaved as a highly reactive solute, which was continuously generated within the soil columns during flow and increased after flow interruption. DOM significantly increased the mobility of bromide and all pollutants, but the effects differed according the hydrophobic and the ionic character of the molecules. However, no clear effects of the origin of DOM on the mobility of the different contaminants were observed.

  10. Do Variations in Detrital Inputs Influence Stable Soil Organic Matter? - An Experimental Approach

    NASA Astrophysics Data System (ADS)

    Lajtha, K.; Townsend, K.; Brewer, E.; Caldwell, B.; Kalbitz, K.; Plante, A.

    2007-12-01

    Recognition of the importance of feedbacks from plants in determining soil nutrient dynamics and C storage led to a large number of litter decomposition studies. Despite growing knowledge of short-term litter dynamics, we know relatively little about the fate of plant litter and its role in determining SOM content and nutrient cycling over time scales ranging from decades and centuries. To address this gap, we established long-term studies of controls on soil organic matter formation in an old-growth forest at the H.J. Andrews Experimental Forest, OR. This study complements a network of recently established similar experiments that pan climatic and soil gradients, as well as the original DIRT experiment established in the Wisconsin Arboretum in 1956 in both grassland and forested sites. The central goal of the DIRT project is to assess how rates and sources of plant litter inputs control the accumulation and dynamics of organic matter and nutrients in forest soils over decadal time scales. Treatment plots include doubled litter (needle) inputs , doubled wood, no above ground litter (screened) inputs, no root inputs (trenched), and no inputs (screened and trenched). For the 50th anniversary of the Wisconsin sites and the 10th anniversary of the H.J. Andrews site, we used sequential density fractionation of soils from all treatments to determine if adding or removing either below- or above-ground litter inputs influenced carbon stabilization as soil organic matter. After 50 years, double litter plots in both prairie and forested soils had higher %C in the 0-10 cm horizon. In the forested site, plots showed increased C content of the lightest fraction, which represents relatively young SOM with a short turnover time. However, the first two heavy fractions also showed increases in C with added aboveground litter, suggesting the importance of aboveground litter inputs to SOM in the forest. No such pattern existed for the prairie soil, and we hypothesize that this is

  11. Lability of secondary organic particulate matter

    PubMed Central

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; Gilles, Mary K.; Zaveri, Rahul A.; Bertram, Allan K.

    2016-01-01

    The energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representative of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate Dorg for the biogenic case is at least 103 times greater than that of the anthropogenic case. These differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere. PMID:27791063

  12. Lability of secondary organic particulate matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Liu, Pengfei; Li, Yong Jie; Wang, Yan

    2016-10-24

    We report the energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representativemore » of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate D org for the biogenic case is at least 10 3 times greater than that of the anthropogenic case. In conclusion, these differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere.« less

  13. Impact of natural organic matter properties on the kinetics of suspended ion exchange process.

    PubMed

    Bazri, Mohammad Mahdi; Mohseni, Madjid

    2016-03-15

    Removal kinetics of four standard organic matter isolates under the application of strongly basic ion exchange resins (IEX) in suspended mode was studied under commercial application conditions. Suwannee River natural organic matter (SRNOM), SR fulvic acid (SRFA), and Pony Lake fulvic acid (PLFA) were greatly removed (>90%) and highly preferred by IEX resins (α > 5, over Cl(-), and HCO3(-)) while SR humic acid (SRHA) was the least preferred organic structure among the four isolates studied (α ≈ 1). Moreover, the efficacy of removal for fulvic acids (i.e., SRFA, PLFA) was consistent over consecutive reuse of IEX resins (i.e., loading cycles) whereas it decreased for SRNOM and SRHA over the course of operation. The stoichiometric correlation between the chloride released from the resins as a result of organic molecules uptake indicated that ion exchange was the dominant mechanism. Results obtained indicated that molecular weight and charge density of isolates played a major role in the performance of ion exchange process for organic matter removal. Furthermore, various empirical and physical models were evaluated using the experimental data and pore diffusion was found to be the rate-liming step during the uptake of organic matters; hence, it was used as the appropriate model to predict the kinetics of removal. Consequently, free liquid diffusivities and effective pore diffusion coefficients of organic molecules were estimated and findings were in agreement with the literature data that were obtained from spectrophotometric methods. Copyright © 2015 Elsevier Ltd. All rights reserved.

  14. Global Warming Potential from early phase decomposition of soil organic matter amendments

    NASA Astrophysics Data System (ADS)

    Mayer, A.; Silver, W. L.

    2015-12-01

    Organic matter amendments to soil are widely used as a method of enhancing nutrient availability for crops or grassland. Amendments such as composted manure or greenwaste also have the co-benefits of potentially increasing soil carbon (C) stocks (DeLonge et al., 2013) and diverting organic waste from landfills or manure lagoons. However, application of organic matter amendments can also stimulate emissions of greenhouse gases (GHGs). In this study we determined how the chemical quality of organic matter amendments affected soil C and N content and GHG emissions during early stage decomposition. California grassland soils were amended with six different amendments of varying C and N content including three composts and three feedstocks (goat and horse bedding and cattle manure). Amendments and soils were incubated in the laboratory for 7 weeks; GHG fluxes were measured weekly. The three feedstocks emitted significantly more GHGs than the composted materials. With the exception of cow manure, N content of the amendment was linearly correlated with global warming potential emitted (R2= 0.66, P <0.0001). C:N ratios were not a significant predictor of GHG emissions. Cow manure stimulated a net loss of C (or C equivalents) in the mineral soil, as expected. However, greenwaste compost also surprisingly resulted in net C losses, while goat bedding, horse bedding, and the other compost were either C neutral or a slight net C sink at the end of the incubation. Ongoing analyses are examining the fate of the C incorporated from the amendment to the soil as occluded or free light fraction, as well as N mineralization rates. Our data suggest that N content of organic matter amendments is a good predictor of initial GHG emissions. The study also indicates that composting greenwaste with N-rich bedding and manure can result in lower GHG emissions and C sequestration compared to the individual uncomposted components.

  15. Dissolved organic matter (DOM) in microalgal photobioreactors: a potential loss in solar energy conversion?

    PubMed

    Hulatt, Chris J; Thomas, David N

    2010-11-01

    Microalgae are considered to be a potential alternative to terrestrial crops for bio-energy production due to their relatively high productivity per unit area of land. In this work we examined the amount of dissolved organic matter exuded by algal cells cultured in photobioreactors, to examine whether a significant fraction of the photoassimilated biomass could potentially be lost from the harvestable biomass. We found that the mean maximum amount of dissolved organic carbon (DOC) released measured 6.4% and 17.3% of the total organic carbon in cultures of Chlorellavulgaris and Dunaliella tertiolecta, respectively. This DOM in turn supported a significant growth of bacterial biomass, representing a further loss of the algal assimilated carbon. The release of these levels of DOC indicates that a significant fraction of the photosynthetically fixed organic matter could be lost into the surrounding water, suggesting that the actual biomass yield per hectare for industrial purposes could be somewhat less than expected. A simple and inexpensive optical technique, based on chromophoric dissolved organic matter (CDOM) measurements, to monitor such losses in commercial PBRs is discussed.

  16. Exoenzyme activities as indicators of dissolved organic matter composition in the hyporheic zone of a floodplain river

    Treesearch

    Sandra M. Clinton; Rick T. Edwards; Stuart E.G. Findlay

    2010-01-01

    We measured the hyporheic microbial exoenzyme activities in a floodplain river to determine whether dissolved organic matter (DOM) bioavailability varied with overlying riparian vegetation patch structure or position along flowpaths. Particulate organic matter (POM), dissolved organic carbon (DOC), dissolved oxygen (DO), electrical conductivity and temperature were...

  17. FACTORS INFLUENCING PHOTOREACTIONS OF DISSOLVED ORGANIC MATTER IN A COASTAL RIVER OF THE SOUTHEASTERN UNITED STATES

    EPA Science Inventory

    Photoreactions of dissolved organic matter can affect the oxidizing capacity, nutrient dynamics, trace gas exchange, and color of surface waters. This study focuses on factors that affect the photoreactions of the colored dissolved organic matter (CDOM) in the Satilla River, a co...

  18. Evolution of pH, organic matter and (226)radium/calcium partitioning in U-mining debris following revegetation with pine trees.

    PubMed

    Thiry, Y; Van Hees, M

    2008-04-01

    Natural attenuation processes resulting from the afforestation of some U-waste rock piles have the potential to limit the linkage of radioelements and other trace pollutants, thereby minimizing exposure risks. We determined the evolution of pH and organic matter and compared the (226)Ra and Ca extractability in pyrite-containing mining debris which was revegetated 35 years ago with Scots pine. Oxidation of sulphidic minerals remaining in the substrate appeared to dominate over acidification processes due to vegetation inputs and litter decomposition. The accumulation of organic matter in forest floor had a negligible effect on the (226)Ra upward recycling compared to the migration losses observed mainly from decarbonatation of the surface mining debris. (226)Ra was overall less soluble than Ca in the soil profile but NH(4)Ac-pH 5 had the capacity to extract a (226)Ra fraction of 31.1-41.5%, i.e. at least twice as much as for Ca. In deeper layers, a majority of both Ca and (226)Ra were extractable from the same non-specific adsorption pool, which mainly involved carbonate. In the upper acidified layer, the incorporation of organic matter had no effect on (226)Ra extractability. A further specific adsorption pool for (226)Ra was attributed to the formation of sparingly soluble Fe-Al oxyhydroxides. However, that specific (226)Ra-bearing phase was readily dissolved in NH(4)Ac-pH 5, indicating a relatively reversibility of the precipitation reaction of (226)Ra with amorphous oxide. Trees are effective at reducing hydrological release of many pollutants but in the mining debris studied, four decades of pine growth did not significantly promote (226)Ra remediation in the soil.

  19. Using organic matter to increase soil fertility in Burundi: potentials and limitations

    NASA Astrophysics Data System (ADS)

    Kaboneka, Salvator

    2015-04-01

    Agriculture production in Burundi is dominated by small scale farmers (0.5 ha/household) who have only very limited access to mineral inputs. In the past, farmers have relied on fallow practices combined with farm yard manures to maintain and improve soil fertility. However, due to the high population growth and high population density (370/km²), fallow practices are nowadays no longer feasible, animal manures cannot be produced in sufficient quantities to maintain soil productivity and food insecurity has become a quasi permanent reality. Most Burundian soils are characterized by 1:1 types of clay minerals (kaolinite) and are acidic in nature. Such soils are of very low cation exchange capacity (CEC). To compare the effect of % clays and % organic matter (% C), correlations tests have been conducted between the two parameters and the CEC. It was found that in high altitude kaolinitic and acidic soils, CEC was highly correlated to % C and less correlated to % clay, suggesting that organic matter could play an important role in improving fertility and productivity of these soils. Based on these findings, additional studies have been conducted to evaluate the fertilizer and soil amendment values of animal manures (cattle, goat, chicken), and leguminous (Calliandra calothyrsus, Gliricidia sepium, Senna simea, Senna spectabilis) and non-leguminous (Tithonia diversifolia) foliar biomass. It was observed that chicken manure significantly reduces Al3+ levels in acidic soils, while Tithonia diversifolia outperforms in nutrient releases compared to the commonly known leguminous agroforestry shrubs and trees indicated above. Although the above mentioned organic sources can contribute to the soil nutrients supply, the quantities potentially available on farm are generally small. The only solution is to supplement these organic sources with other organic sources (compost, organic household waste), chemical fertilizers and mineral amendments (lime) to achieve Integrated Soil

  20. Response of hydrolytic enzyme activities and nitrogen mineralization to fertilizer and organic matter application in subtropical paddy soils

    NASA Astrophysics Data System (ADS)

    Kader, Mohammed Abdul; Yeasmin, Sabina; Akter, Masuda; Sleutel, Steven

    2016-04-01

    Driving controllers of nitrogen (N) mineralization in paddy soils, especially under anaerobic soil conditions, remain elusive. The influence of exogenous organic matter (OM) and fertilizer application on the activities of five relevant enzymes (β-glucosaminidase, β-glucosidase, L-glutaminase, urease and arylamidase) was measured in two long-term field experiments. One 18-years field experiment was established on a weathered terrace soil with a rice-wheat crop rotation at the Bangabandhu Sheikh Mujibur Rahman Agricultural University (BSMRAU) having five OM treatments combined with two mineral N fertilizer levels. Another 30-years experiment was established on a young floodplain soil with rice-rice crop rotation at the Bangladesh Agricultural University (BAU) having eight mineral fertilizer treatments combined with organic manure. At BSMRAU, N fertilizer and OM amendments significantly increased all enzyme activities, suggesting them to be primarily determined by substrate availability. At BAU, non-responsiveness of β-glucosidase activity suggested little effect of the studied fertilizer and OM amendments on general soil microbial activity. Notwithstanding probably equal microbial demand for N, β-glucosaminidase and L-glutaminase activities differed significantly among the treatments (P>0.05) and followed strikingly opposite trends and correlations with soil organic N mineralization. So enzymatic pathways to acquire N differed by treatment at BAU, indicating differences in soil N quality and bio-availability. L-glutaminase activity was significantly positively correlated to the aerobic and anaerobic N mineralization rates at both field experiments. Combined with negative correlations between β-glucosaminidase activity and N mineralization rates, it appears that terminal amino acid NH2 hydrolysis was a rate-limiting step for soil N mineralization at BAU. Future investigations with joint quantification of polyphenol accumulation and binding of N, alongside an

  1. Distribution and source of organic matter in surface sediment from the muddy deposit along the Zhejiang coast, East China Sea.

    PubMed

    Xu, Gang; Liu, Jian; Hu, Gang; Jonell, Tara N; Chen, Lilei

    2017-10-15

    To constrain organic matter compositions and origins, elemental (TOC, TN, C/N) and stable carbon (δ 13 C) and nitrogen isotope (δ 15 N) compositions are measured for surface sediments collected from muddy deposit along the Zhejiang coast, East China Sea. The results showed that the TOC, TN, C/N, δ 13 C, and δ 15 N were 0.19-0.67%, 0.03-0.09%, 6.76-9.22, -23.43 to -20.26‰, and 3.93-5.27‰, respectively. The δ 13 C values showed that the mixing inputs of terrigenous and marine organic matter generally dominated sedimentary organic matter in the west part, and the sedimentary organic matters were mainly influenced by the marine organic matter in the east part of the study area. A stable carbon isotope two end member mixing model estimates ~38% terrestrial -derived and ~62% marine-derived inputs to sedimentary organic matter. Microbial mineralization strongly controls δ 15 N values, and therefore cannot be used to identify the provenance of organic matter for the Zhenjiang coast. Copyright © 2017. Published by Elsevier Ltd.

  2. Effect of soil pH and organic matter on the adsorption and desorption of pentachlorophenol.

    PubMed

    Chien, Shui-Wen Chang; Chen, Shou-Hung; Li, Chi-Jui

    2018-02-01

    Various properties of soil affect the partition of organic contaminants within, and conversely, the properties of the organic contaminants also directly affect their partition behavior in soil. Therefore, understanding the effects of various properties of soil on the partition of organic contaminants favors subsequent assessment and provides soil remediation methods for policymakers. This study selected pentachlorophenol (PCP), a common hydrophobic ionizable organic compound in contaminated sites worldwide, as the target contaminant. The effects of pH, organic matter, and the combination of both, on PCP adsorption/desorption behavior in soil were investigated. Phosphoric acid and potassium hydroxide were used as buffer solutions to modify the soil pH by the batch and column extraction methods. A common retail organic fertilizer and fulvic acid were selected as additives to manipulate the soil organic content. Modifying the pH of the soil samples revealed that acidic soil exhibited a greater PCP adsorption rate than alkaline soil. The amount of PCP desorption increased regardless of pH of the in situ contaminated soil. The adsorption of PCP increased with increasing amount of organic additive. However, addition of fulvic acid yielded different results compared to the addition of organic fertilizer. Specifically, the organic fertilizer could not compete with the in situ contaminated soil in PCP adsorption, whereas fulvic acids increased the PCP dissolution to facilitate adsorbing contaminant adsorption. The combined effect of pH modification and organic matter addition provides additional PCP adsorption sites; therefore, adding the organic fertilizer to decrease the soil pH elevated the PCP adsorption rates of the laterite, alluvial, and in situ contaminated soil samples. The study results revealed that both pH and organic matter content are crucial to PCP adsorption/desorption in soil. Therefore, the effects of soil pH and organic matter should be considered in

  3. Organic matter and soil structure in the Everglades Agricultural Area

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wright, Alan L.; Hanlon, Edward A.

    This publication pertains to management of organic soils (Histosols) in the Everglades Agricultural Area (EAA). These former wetland soils are a major resource for efficient agricultural production and are important globally for their high organic matter content. Recognition of global warming has led to considerable interest in soils as a repository for carbon. Soils rich in organic matter essentially sequester or retain carbon in the profile and can contribute directly to keeping that sequestered carbon from entering the atmosphere. Identification and utilization of management practices that minimize the loss of carbon from organic soils to the atmosphere can minimize effectsmore » on global warming and increase the longevity of subsiding Histosols for agricultural use. Understanding and predicting how these muck soils will respond to current and changing land uses will help to manage soil carbon. The objectives of this document are to: a. Discuss organic soil oxidation relative to storing or releasing carbon and nitrogen b. Evaluate effects of cultivation (compare structure for sugarcane vs. uncultivated soil) Based upon the findings from the land-use comparison (sugarcane or uncultivated), organic carbon was higher with cultivation in the lower depths. There is considerable potential for minimum tillage and residue management to further enhance carbon sequestration in the sugarcane system. Carbon sequestration is improved and soil subsidence is slowed with sugarcane production, and both of these are positive outcomes. Taking action to increase or maintain carbon sequestration appears to be appropriate but may introduce some risk to farming operations. Additional management methods are needed to reduce this risk. For both the longevity of these organic soils and from a global perspective, slowing subsidence through BMP implementation makes sense. Since these BMPs also have considerable societal benefit, it remains to be seen if society will help to offset a

  4. Late Holocene swampy forest of Loango Bay (Congo). Sedimentary environments and organic matter deposition

    NASA Astrophysics Data System (ADS)

    Malounguila-Nganga, Dieudonné; Giresse, Pierre; Boussafir, Mohammed; Miyouna, Timothée

    2017-10-01

    This region, comprised between the Kouilou estuary and Pointe-Noire, is characterised by a very specific morphological setting. On the continental side, the coastal sector is dominated by cliffs of sand over 100 m high, referred to as the Série des Cirques, whereas, on the ocean side, very active erosion is presently taking place which has resulted in a retreat of the shoreline of more than 100 m over the last hundred years. New 14C datings and different analyses of organic matter and clay minerals (X-Ray data) were performed in order to reconstruct the geological and ecological evolution of the area during the Late Holocene and replace it in the palaeoclimatic scheme deduced from previous regional studies. From 7 to 6000 yr cal BP, the accumulation of important beach barriers by the oceanic drift allowed the definition of a narrow swamp depression several tens of kilometres long. A dense ombrophile and hydromorphic forest, in spite of being very close to the oceanic coast, remained sheltered from any brackish influence and fed accumulations of peat and organic muds. The emersive trend of 3000-2000 yr BP, i.e. the passage from a vast forest swamp with a water body several metres deep to a wet zone with some emersions, is expressed by a large colluvial accumulation. High primary production is not clearly attested in this wet area. High HI values would indicate rather long-lasting conservation in a swampy environment, the lowest values indicating alternating episodes of emersion and immersion. In such peatlands, OM preservation is favoured by an anoxic environment and rapid burial. The δ 13C values of older peats dated ca. 7000 yr cal BP are -28 to -26‰, typical of a C3 origin. Thus, the ca. -16‰ value indicates the greatest opening of the cover, suggesting a forest-savanna mosaic ca. 2500 yr cal BP. At Kivesso, several proxies suggest a wetter trend towards 500 yr cal BP. An ultimate drier trend is observed during the last two centuries, which has been

  5. A review of observations of organic matter in fogs and clouds: Origin, processing and fate

    NASA Astrophysics Data System (ADS)

    Herckes, Pierre; Valsaraj, Kalliat T.; Collett, Jeffrey L.

    2013-10-01

    While fog and cloud composition has been studied for decades, most of the research was limited to inorganic species and fog acidity. Recently the focus has shifted towards organic matter in the atmospheric aqueous phase of fogs and clouds: its origin, reactivity and fate. An impressive number of fog and cloud chemistry observational studies have been performed over the last decade throughout the world. In the present work we will review the state of knowledge of atmospheric organic matter processing by fogs, with a focus on field observations. We start by reviewing observational studies in general and then discuss our knowledge on the occurrence of organic matter in fogs, its solubility, characterization and molecular speciation. Organic carbon concentrations can vary widely from approximately 1 mg C/L in remote marine environments to more than 100 mg C/L in polluted radiation fogs, accounting for a substantial part of fogwater solutes. The carbonaceous material can enter the droplets from the gas and particle phase and the scavenging behavior of fogs will be detailed. Observational studies showed evidence of aqueous phase transformation of organic material, in particular secondary organic aerosol (SOA) generation, in fog. Recent observations of biological material in fog suggest also an impact of biological processing within the droplets on fog organic matter. The review will end with a discussion of the impact of fog on the deposition fluxes of organic material and hence its atmospheric lifetime.

  6. Radiocarbon and stable carbon isotope compositions of chemically fractionated soil organic matter in a temperate-zone forest.

    PubMed

    Koarashi, Jun; Iida, Takao; Asano, Tomohiro

    2005-01-01

    To better understand the role of soil organic matter in terrestrial carbon cycle, carbon isotope compositions in soil samples from a temperate-zone forest were measured for bulk, acid-insoluble and base-insoluble organic matter fractions separated by a chemical fractionation method. The measurements also made it possible to estimate indirectly radiocarbon ((14)C) abundances of acid- and base-soluble organic matter fractions, through a mass balance of carbon among the fractions. The depth profiles of (14)C abundances showed that (1) bomb-derived (14)C has penetrated the first 16cm mineral soil at least; (2) Delta(14)C values of acid-soluble organic matter fraction are considerably higher than those of other fractions; and (3) a significant amount of the bomb-derived (14)C has been preserved as the base-soluble organic matter around litter-mineral soil boundary. In contrast, no or little bomb-derived (14)C was observed for the base-insoluble fraction in all sampling depths, indicating that this recalcitrant fraction, accounting for approximately 15% of total carbon in this temperate-zone forest soil, plays a role as a long-term sink in the carbon cycle. These results suggest that bulk soil organic matter cannot provide a representative indicator as a source or a sink of carbon in soil, particularly on annual to decadal timescales.

  7. Stabilization of ancient organic matter in deep buried paleosols

    NASA Astrophysics Data System (ADS)

    Marin-Spiotta, E.; Chaopricha, N. T.; Mueller, C.; Diefendorf, A. F.; Plante, A. F.; Grandy, S.; Mason, J. A.

    2012-12-01

    Buried soils representing ancient surface horizons can contain large organic carbon reservoirs that may interact with the atmosphere if exposed by erosion, road construction, or strip mining. Paleosols in long-term depositional sites provide a unique opportunity for studying the importance of different mechanisms on the persistence of organic matter (OM) over millennial time-scales. We report on the chemistry and bioavailability of OM stored in the Brady soil, a deeply buried (7 m) paleosol in loess deposits of southwestern Nebraska, USA. The Brady Soil developed 9,000-13,500 years ago during a time of warming and drying. The Brady soil represents a dark brown horizon enriched in C relative to loess immediately above and below. Spanning much of the central Great Plains, this buried soil contains large C stocks due to the thickness of its A horizon (0.5 to 1 m) and wide geographic extent. Our research provides a unique perspective on long-term OM stabilization in deep soils using multiple analytical approaches. Soils were collected from the Brady soil A horizon (at 7 m depth) and modern surface A horizons (0-15 cm) at two sites for comparison. Soils were separated by density fractionation using 1.85 g ml-1 sodium polytungstate into: free particulate organic matter (fPOM) and aggregate-occluded (oPOM) of two size classes (large: >20 μm, and small: < 20 μm). The remaining dense fraction was separated into sand, silt, and clay size fractions. The distribution and age of C among density and particle-size fractions differed between surface and Brady soils. We isolated the source of the characteristic dark coloring of the Brady soil to the oPOM-small fraction, which also contained 20% of the total organic C pool in the Brady soil. The oPOM-small fraction and the bulk soil in the middle of the Brady A horizon had 14C ages of 10,500-12,400 cal yr BP, within the time that the soil was actively forming at the land surface. Surface soils showed modern ages. Lipid analyses of

  8. Geochemical characteristics of organic matter in the Andaman Sea sediments: Implications for source, paleovegetation and paleoclimate changes

    NASA Astrophysics Data System (ADS)

    Hossain, H. M. Z.; Sampei, Y.; Kawahata, H.

    2016-12-01

    The distribution, source, and redox variation of sedimentary organic matter in the Andaman Sea is significant for understanding its biogeochemical cycle, which we determined the total organic carbon (TOC), total nitrogen (TN), and n-alkanes contents. TOC and TN concentrations varied from 0.61 to 1.18 wt.% (average 0.87 wt.%) and 0.07 to 0.17 wt.% (average 0.13 wt.%), respectively with high TOC in the clay-rich sediments indicate hydrodynamic sorting readily controlled TOC abundances. Bulk C/N ratio (5.51 to 11.92, average 7.89) is attributed to the high inputs of organic matter from planktonic sources and an appreciable amounts of terrestrial derived organic matter. n-Alkane distributions from the Andaman Sea sediment cores are characterized mainly by C17 to C35, with odd-over-even predominance suggest a diverse origin of organic matter. High relative abundances of mid-chain n-alkanes of C23 and C25 recorded in the samples that are characteristically derived from submerges/floating aquatic macrophytes. However, odd long-chain n-alkanes from C27 to C33 with high peaks at C29 and C31 were detected in the samples reflecting a terrigenous origin of organic matter. The average chain length (ACL), carbon preference index (CPI), Paq and Pwax ratio values further suggested that major influence of organic matter from non-emergent aquatic macrophytes together significant proportions of grasses and herbs. Low Pr/Ph and Tm/Ts ratios in most section implying a more reducing to suboxic conditions prevailed during organic matter preservation in the oceanic event. However, high ACL values and low Paq values in the down-core variation could suggest initially cold and dry climates and gradually shifted to warm and humid conditions.

  9. The abiotic degradation of soil organic matter to oxalic acid

    NASA Astrophysics Data System (ADS)

    Studenroth, Sabine; Huber, Stefan; Schöler, H. F.

    2010-05-01

    The abiotic degradation of soil organic matter to volatile organic compounds was studied intensely over the last years (Keppler et al., 2000; Huber et al., 2009). It was shown that soil organic matter is oxidised due to the presence of iron (III), hydrogen peroxide and chloride and thereby produces diverse alkyl halides, which are emitted into the atmosphere. The formation of polar halogenated compounds like chlorinated acetic acids which are relevant toxic environmental substances was also found in soils and sediments (Kilian et al., 2002). The investigation of the formation of other polar halogenated and non-halogenated compounds like diverse mono- and dicarboxylic acids is going to attain more and more importance. Due to its high acidity oxalic acid might have impacts on the environment e.g., nutrient leaching, plant diseases and negative influence on microbial growth. In this study, the abiotic formation of oxalic acid in soil is examined. For a better understanding of natural degradation processes mechanistic studies were conducted using the model compound catechol as representative for structural elements of the humic substances and its reaction with iron (III) and hydrogen peroxide. Iron is one of the most abundant elements on earth and hydrogen peroxide is produced by bacteria or through incomplete reduction of oxygen. To find suitable parameters for an optimal reaction and a qualitative and quantitative analysis method the following reaction parameters are varied: concentration of iron (III) and hydrogen peroxide, time dependence, pH-value and influence of chloride. Analysis of oxalic acid was performed employing an ion chromatograph equipped with a conductivity detector. The time dependent reaction shows a relatively fast formation of oxalic acid, the optimum yield is achieved after 60 minutes. Compared to the concentration of catechol an excess of hydrogen peroxide as well as a low concentration of iron (III) are required. In absence of chloride the

  10. Organic matter in meteorites and comets - Possible origins

    NASA Technical Reports Server (NTRS)

    Anders, Edward

    1991-01-01

    At least six extraterrestrial environments may have contributed organic compounds to meteorites and comets: solar nebula, giant-planet subnebulae, asteroid interiors containing liquid water, carbon star atmospheres, and diffuse or dark interstellar clouds. The record in meteorites is partly obscured by pervasive reheating that transformed much of the organic matter to kerogen; nonetheless, it seems that all six formation sites contributed. For comets, the large abundance of HCHO, HCN, and unsaturated hydrocarbons suggests an interstellar component of 50 percent or more, but the contributions of various interstellar processes, and of a solar-nebula component, are hard to quantify. A research program is outlined that may help reduce these uncertainties.

  11. Advances in understanding the molecular structure of soil organic matter: Implications for interactions in the environment

    EPA Science Inventory

    We take a historic approach to explore how concepts of the chemical and physical nature of soil organic matter have evolved over time. We emphasize conceptual and analytical achievements in organic matter research over the last two decades and demonstrate how these developments h...

  12. [Spatial interpolation of soil organic matter using regression Kriging and geographically weighted regression Kriging].

    PubMed

    Yang, Shun-hua; Zhang, Hai-tao; Guo, Long; Ren, Yan

    2015-06-01

    Relative elevation and stream power index were selected as auxiliary variables based on correlation analysis for mapping soil organic matter. Geographically weighted regression Kriging (GWRK) and regression Kriging (RK) were used for spatial interpolation of soil organic matter and compared with ordinary Kriging (OK), which acts as a control. The results indicated that soil or- ganic matter was significantly positively correlated with relative elevation whilst it had a significantly negative correlation with stream power index. Semivariance analysis showed that both soil organic matter content and its residuals (including ordinary least square regression residual and GWR resi- dual) had strong spatial autocorrelation. Interpolation accuracies by different methods were esti- mated based on a data set of 98 validation samples. Results showed that the mean error (ME), mean absolute error (MAE) and root mean square error (RMSE) of RK were respectively 39.2%, 17.7% and 20.6% lower than the corresponding values of OK, with a relative-improvement (RI) of 20.63. GWRK showed a similar tendency, having its ME, MAE and RMSE to be respectively 60.6%, 23.7% and 27.6% lower than those of OK, with a RI of 59.79. Therefore, both RK and GWRK significantly improved the accuracy of OK interpolation of soil organic matter due to their in- corporation of auxiliary variables. In addition, GWRK performed obviously better than RK did in this study, and its improved performance should be attributed to the consideration of sample spatial locations.

  13. Organic matter in a coal ball: Peat or coal?

    USGS Publications Warehouse

    Hatcher, P.G.; Lyons, P.C.; Thompson, C.L.; Brown, F.W.; Maciel, G.E.

    1982-01-01

    Chemical analyses of morphologically preserved organic matter in a Carboniferous coal ball reveal that the material is coalified to a rank approximately equal to that of the surrounding coal. Hence, the plant tissues in the coal ball were chemically altered by coalification processes and were not preserved as peat. Copyright ?? 1982 AAAS.

  14. Lyophilization and Reconstitution of Reverse Osmosis Concentrated Natural Organic Matter

    EPA Science Inventory

    Disinfection by-product (DBP) research can be complicated by difficulties in shipping large water quantities and changing natural organic matter (NOM) characteristics over time. To overcome these issues, it is advantageous to have a reliable method for concentrating and preservin...

  15. Accumulation of chlorinated benzenes in earthworms

    USGS Publications Warehouse

    Beyer, W.N.

    1996-01-01

    Chlorinated benzenes are widespread in the environment. Hexachlorobenzene, pentachlorobenzene and all isomers of dichlorobenzenes, trichlorobenzenes, and tetrachlorobenzenes, have been detected in fish, water, and sediments from the Great Lakes. This paper describes a long-term (26 week) experiment relating the concentrations of chlorinated benzenes in earthworms to 1) the length of exposure, and it describes three 8-week experiments relating concentrations of chlorinated benzenes in earthworms to 2) their concentration in soil 3) the soil organic matter content and, 4) the degree of chlorination. In the 26-week experiment, the concentration of 1,2,4 - trichlorobenzene in earthworms fluctuated only slightly about a mean of 0.63 ppm (Fig. 1). Although a statistically significant decrease can be demonstrated over the test (Pearson correlation coefficient, r = -0.62 p < 0.05), the decrease was minor. Hexachlorobenzene in earthworms showed a cyclical trend that coincided with replacement of the media, and a slight but statistically significant tendency to increase from about 2 to 3 ppm over the 26 weeks (r = 0.55, p < 0.05). Concentrations of both trichlorobenzene and hexachlorobenzene in earthworms increased as the concentrations in the soil increased (Fig. 2), but leveled off at the highest soil concentrations. The most surprising result of this study was the relatively low concentrations in earthworms compared to those in soils. The average concentration of each of the six isomers of trichlorobenzene and tetrachlorobenzene in earthworms was only about 1 ppm (Table 2); the isomeric structure did not affect accumulation. The concentration of organic matter in soil had a prominent effect on hexachlorobenzene concentrations in earthworms (Fig. 3). Hexachlorobenzene concentrations decreased steadily from 9.3 ppm in earthworms kept in soil without any peat moss added to about 1 ppm in soil containing 16 or 32% organic matter.

  16. Carotenoids are the likely precursor of a significant fraction of marine dissolved organic matter

    PubMed Central

    Arakawa, Neal; Aluwihare, Lihini I.; Simpson, Andre J.; Soong, Ronald; Stephens, Brandon M.; Lane-Coplen, Daniel

    2017-01-01

    The ocean’s biota sequester atmospheric carbon dioxide (CO2) in part by producing dissolved organic matter (DOM) that persists in the ocean for millennia. This long-term accumulation of carbon may be facilitated by abiotic and biotic production of chemical structures that resist degradation, consequently contributing disproportionately to refractory DOM. Compounds that are selectively preserved in seawater were identified in solid-phase extracted DOM (PPL-DOM) using comprehensive gas chromatography (GC) coupled to mass spectrometry (MS). These molecules contained cyclic head groups that were linked to isoprenoid tails, and their overall structures closely resembled carotenoid degradation products (CDP). The origin of these compounds in PPL-DOM was further confirmed with an in vitro β-carotene photooxidation experiment that generated water-soluble CDP with similar structural characteristics. The molecular-level identification linked at least 10% of PPL-DOM carbon, and thus 4% of total DOM carbon, to CDP. Nuclear magnetic resonance spectra of experimental CDP and environmental PPL-DOM overlapped considerably, which indicated that even a greater proportion of PPL-DOM was likely composed of CDP. The CDP-rich DOM fraction was depleted in radiocarbon (14C age > 1500 years), a finding that supports the possible long-term accumulation of CDP in seawater. By linking a specific class of widespread biochemicals to refractory DOM, this work provides a foundation for future studies that aim to examine how persistent DOM forms in the ocean. PMID:28959723

  17. Effect of Natural Organic Matter on the Light-initiated Transformation of Fullerenes

    EPA Science Inventory

    Natural organic matter (NOM) is ubiquitous in natural environments. Previous research has observed enhanced dispersion of Buckminster fullerene (C60) in water in the presence of NOM. It is also well-known that NOM can impact the photoreaction of many organic compounds by producin...

  18. Quality of soluble organic C, N, and P produced by different types and species of litter: root litter versus leaf litter

    USDA-ARS?s Scientific Manuscript database

    In forested ecosystems, the quality of dissolved organic matter (DOM) produced by freshly senesced litter may differ by litter type and species, and these differences may influence the amount of DOM that is respired versus that which may either contribute to soil organic matter accumulation or be le...

  19. Characterizing the Organic Matter in Surface Sediments from ...

    EPA Pesticide Factsheets

    The San Juan Bay Estuary (SJBE) is located on the north coast of Puerto Rico and includes the San Juan Bay, San José Lagoon, La Torrecilla Lagoon and Piñones Lagoon, as well as the Martín Peña and the Suárez Canals. The SJBE watershed has the highest density of inhabitants and major industrial activities in Puerto Rico. As a result, the SJBE is impacted by wastewater from combined-sewer overflows, faulty sewer lines, and storm water runoff; these factors combined with trash accumulation and infilling of the Martín Peña canal, contribute to decreased tidal exchange and reduced flushing in the estuary. To quantify the impact of the obstruction of the Martín Peña canal on anthropogenic nutrient distribution in the SJBE, over 200 sediment grab samples were collected throughout the estuary in 2015. The samples were analyzed for carbonate content, organic matter, grain size, bulk density, percent phosphorus, percent nitrogen (%N), and stable isotopes (δ15N and δ13C). The %N values were highest in the surface sediments from the western portion of the Martín Peña canal, where %N was >0.86%. In contrast, %N from the adjacent San José lagoon averaged <0.2%. Grain size distributions across the SJBE were consistent with low flushing in the inner portions of the SJBE. While the Martín Peña canal remains phosphorus limited, N:P ratios suggest the San Juna Bay and San José Lagoon have undergone major ecological shifts in the past two decades. Our

  20. Organic matter dynamics and stable isotope signature as tracers of the sources of suspended sediment

    NASA Astrophysics Data System (ADS)

    Schindler Wildhaber, Y.; Liechti, R.; Alewell, C.

    2012-06-01

    Suspended sediment (SS) and organic matter in rivers can harm brown trout Salmo trutta by affecting the health and fitness of free swimming fish and by causing siltation of the riverbed. The temporal and spatial dynamics of sediment, carbon (C), and nitrogen (N) during the brown trout spawning season in a small river of the Swiss Plateau were assessed and C isotopes as well as the C/N atomic ratio were used to distinguish autochthonous and allochthonous sources of organic matter in SS loads. The visual basic program IsoSource with 13Ctot and 15N as input isotopes was used to quantify the temporal and spatial sources of SS. Organic matter concentrations in the infiltrated and suspended sediment were highest during low flow periods with small sediment loads and lowest during high flow periods with high sediment loads. Peak values in nitrate and dissolved organic C were measured during high flow and high rainfall, probably due to leaching from pasture and arable land. The organic matter was of allochthonous sources as indicated by the C/N atomic ratio and δ13Corg. Organic matter in SS increased from up- to downstream due to an increase of pasture and arable land downstream of the river. The mean fraction of SS originating from upper watershed riverbed sediment decreased from up to downstream and increased during high flow at all measuring sites along the course of the river. During base flow conditions, the major sources of SS are pasture, forest and arable land. The latter increased during rainy and warmer winter periods, most likely because both triggered snow melt and thus erosion. The measured increase in DOC and nitrate concentrations during high flow support these modeling results. Enhanced soil erosion processes on pasture and arable land are expected with increasing heavy rain events and less snow during winter seasons due to climate change. Consequently, SS and organic matter in the river will increase, which will possibly affect brown trout negatively.