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Sample records for acoustics temporal patterns

  1. In-situ optical and acoustical measurements of the buoyant cyanobacterium p. Rubescens: spatial and temporal distribution patterns.

    PubMed

    Hofmann, Hilmar; Peeters, Frank

    2013-01-01

    Optical (fluorescence) and acoustic in-situ techniques were tested in their ability to measure the spatial and temporal distribution of plankton in freshwater ecosystems with special emphasis on the harmful and buoyant cyanobacterium P. rubescens. Fluorescence was measured with the multi-spectral FluoroProbe (Moldaenke FluoroProbe, MFP) and a Seapoint Chlorophyll Fluorometer (SCF). In-situ measurements of the acoustic backscatter strength (ABS) were conducted with three different acoustic devices covering multiple acoustic frequencies (614 kHz ADCP, 2 MHz ADP, and 6 MHz ADV). The MFP provides a fast and reliable technique to measure fluorescence at different wavelengths in situ, which allows discriminating between P. rubescens and other phytoplankton species. All three acoustic devices are sensitive to P. rubescens even if other scatterers, e.g., zooplankton or suspended sediment, are present in the water column, because P. rubescens containing gas vesicles has a strong density difference and hence acoustic contrast to the ambient water and other scatterers. After calibration, the combination of optical and acoustical measurements not only allows qualitative and quantitative observation of P. rubescens, but also distinction between P. rubescens, other phytoplankton, and zooplankton. As the measuring devices can sample in situ at high rates they enable assessment of plankton distributions at high temporal (minutes) and spatial (decimeters) resolution or covering large temporal (seasonal) and spatial (basin scale) scales. PMID:24303028

  2. In-Situ Optical and Acoustical Measurements of the Buoyant Cyanobacterium P. Rubescens: Spatial and Temporal Distribution Patterns

    PubMed Central

    Hofmann, Hilmar; Peeters, Frank

    2013-01-01

    Optical (fluorescence) and acoustic in-situ techniques were tested in their ability to measure the spatial and temporal distribution of plankton in freshwater ecosystems with special emphasis on the harmful and buoyant cyanobacterium P. rubescens. Fluorescence was measured with the multi-spectral FluoroProbe (Moldaenke FluoroProbe, MFP) and a Seapoint Chlorophyll Fluorometer (SCF). In-situ measurements of the acoustic backscatter strength (ABS) were conducted with three different acoustic devices covering multiple acoustic frequencies (614 kHz ADCP, 2 MHz ADP, and 6 MHz ADV). The MFP provides a fast and reliable technique to measure fluorescence at different wavelengths in situ, which allows discriminating between P. rubescens and other phytoplankton species. All three acoustic devices are sensitive to P. rubescens even if other scatterers, e.g., zooplankton or suspended sediment, are present in the water column, because P. rubescens containing gas vesicles has a strong density difference and hence acoustic contrast to the ambient water and other scatterers. After calibration, the combination of optical and acoustical measurements not only allows qualitative and quantitative observation of P. rubescens, but also distinction between P. rubescens, other phytoplankton, and zooplankton. As the measuring devices can sample in situ at high rates they enable assessment of plankton distributions at high temporal (minutes) and spatial (decimeters) resolution or covering large temporal (seasonal) and spatial (basin scale) scales. PMID:24303028

  3. Temporal patterns in the acoustic signals of beaked whales at Cross Seamount.

    PubMed

    Johnston, D W; McDonald, M; Polovina, J; Domokos, R; Wiggins, S; Hildebrand, J

    2008-04-23

    Seamounts may influence the distribution of marine mammals through a combination of increased ocean mixing, enhanced local productivity and greater prey availability. To study the effects of seamounts on the presence and acoustic behaviour of cetaceans, we deployed a high-frequency acoustic recording package on the summit of Cross Seamount during April through October 2005. The most frequently detected cetacean vocalizations were echolocation sounds similar to those produced by ziphiid and mesoplodont beaked whales together with buzz-type signals consistent with prey-capture attempts. Beaked whale signals occurred almost entirely at night throughout the six-month deployment. Measurements of prey presence with a Simrad EK-60 fisheries acoustics echo sounder indicate that Cross Seamount may enhance local productivity in near-surface waters. Concentrations of micronekton were aggregated over the seamount in near-surface waters at night, and dense concentrations of nekton were detected across the surface of the summit. Our results suggest that seamounts may provide enhanced foraging opportunities for beaked whales during the night through a combination of increased productivity, vertical migrations by micronekton and local retention of prey. Furthermore, the summit of the seamount may act as a barrier against which whales concentrate prey. PMID:18252660

  4. The Curious Acoustic Behavior of Estuarine Snapping Shrimp: Temporal Patterns of Snapping Shrimp Sound in Sub-Tidal Oyster Reef Habitat

    PubMed Central

    Bohnenstiehl, DelWayne R.; Lillis, Ashlee; Eggleston, David B.

    2016-01-01

    Ocean soundscapes convey important sensory information to marine life. Like many mid-to-low latitude coastal areas worldwide, the high-frequency (>1.5 kHz) soundscape of oyster reef habitat within the West Bay Marine Reserve (36°N, 76°W) is dominated by the impulsive, short-duration signals generated by snapping shrimp. Between June 2011 and July 2012, a single hydrophone deployed within West Bay was programmed to record 60 or 30 seconds of acoustic data every 15 or 30 minutes. Envelope correlation and amplitude information were then used to count shrimp snaps within these recordings. The observed snap rates vary from 1500–2000 snaps per minute during summer to <100 snaps per minute during winter. Sound pressure levels are positively correlated with snap rate (r = 0.71–0.92) and vary seasonally by ~15 decibels in the 1.5–20 kHz range. Snap rates are positively correlated with water temperatures (r = 0.81–0.93), as well as potentially influenced by climate-driven changes in water quality. Light availability modulates snap rate on diurnal time scales, with most days exhibiting a significant preference for either nighttime or daytime snapping, and many showing additional crepuscular increases. During mid-summer, the number of snaps occurring at night is 5–10% more than predicted by a random model; however, this pattern is reversed between August and April, with an excess of up to 25% more snaps recorded during the day in the mid-winter. Diurnal variability in sound pressure levels is largest in the mid-winter, when the overall rate of snapping is at its lowest, and the percentage difference between daytime and nighttime activity is at its highest. This work highlights our lack of knowledge regarding the ecology and acoustic behavior of one of the most dominant soniforous invertebrate species in coastal systems. It also underscores the necessity of long-duration, high-temporal-resolution sampling in efforts to understand the bioacoustics of animal behaviors

  5. The Curious Acoustic Behavior of Estuarine Snapping Shrimp: Temporal Patterns of Snapping Shrimp Sound in Sub-Tidal Oyster Reef Habitat.

    PubMed

    Bohnenstiehl, DelWayne R; Lillis, Ashlee; Eggleston, David B

    2016-01-01

    Ocean soundscapes convey important sensory information to marine life. Like many mid-to-low latitude coastal areas worldwide, the high-frequency (>1.5 kHz) soundscape of oyster reef habitat within the West Bay Marine Reserve (36°N, 76°W) is dominated by the impulsive, short-duration signals generated by snapping shrimp. Between June 2011 and July 2012, a single hydrophone deployed within West Bay was programmed to record 60 or 30 seconds of acoustic data every 15 or 30 minutes. Envelope correlation and amplitude information were then used to count shrimp snaps within these recordings. The observed snap rates vary from 1500-2000 snaps per minute during summer to <100 snaps per minute during winter. Sound pressure levels are positively correlated with snap rate (r = 0.71-0.92) and vary seasonally by ~15 decibels in the 1.5-20 kHz range. Snap rates are positively correlated with water temperatures (r = 0.81-0.93), as well as potentially influenced by climate-driven changes in water quality. Light availability modulates snap rate on diurnal time scales, with most days exhibiting a significant preference for either nighttime or daytime snapping, and many showing additional crepuscular increases. During mid-summer, the number of snaps occurring at night is 5-10% more than predicted by a random model; however, this pattern is reversed between August and April, with an excess of up to 25% more snaps recorded during the day in the mid-winter. Diurnal variability in sound pressure levels is largest in the mid-winter, when the overall rate of snapping is at its lowest, and the percentage difference between daytime and nighttime activity is at its highest. This work highlights our lack of knowledge regarding the ecology and acoustic behavior of one of the most dominant soniforous invertebrate species in coastal systems. It also underscores the necessity of long-duration, high-temporal-resolution sampling in efforts to understand the bioacoustics of animal behaviors and

  6. Temporal spike pattern learning

    NASA Astrophysics Data System (ADS)

    Talathi, Sachin S.; Abarbanel, Henry D. I.; Ditto, William L.

    2008-09-01

    Sensory systems pass information about an animal’s environment to higher nervous system units through sequences of action potentials. When these action potentials have essentially equivalent wave forms, all information is contained in the interspike intervals (ISIs) of the spike sequence. How do neural circuits recognize and read these ISI sequences? We address this issue of temporal sequence learning by a neuronal system utilizing spike timing dependent plasticity (STDP). We present a general architecture of neural circuitry that can perform the task of ISI recognition. The essential ingredients of this neural circuit, which we refer to as “interspike interval recognition unit” (IRU) are (i) a spike selection unit, the function of which is to selectively distribute input spikes to downstream IRU circuitry; (ii) a time-delay unit that can be tuned by STDP; and (iii) a detection unit, which is the output of the IRU and a spike from which indicates successful ISI recognition by the IRU. We present two distinct configurations for the time-delay circuit within the IRU using excitatory and inhibitory synapses, respectively, to produce a delayed output spike at time t0+τ(R) in response to the input spike received at time t0 . R is the tunable parameter of the time-delay circuit that controls the timing of the delayed output spike. We discuss the forms of STDP rules for excitatory and inhibitory synapses, respectively, that allow for modulation of R for the IRU to perform its task of ISI recognition. We then present two specific implementations for the IRU circuitry, derived from the general architecture that can both learn the ISIs of a training sequence and then recognize the same ISI sequence when it is presented on subsequent occasions.

  7. Temporal spike pattern learning.

    PubMed

    Talathi, Sachin S; Abarbanel, Henry D I; Ditto, William L

    2008-09-01

    Sensory systems pass information about an animal's environment to higher nervous system units through sequences of action potentials. When these action potentials have essentially equivalent wave forms, all information is contained in the interspike intervals (ISIs) of the spike sequence. How do neural circuits recognize and read these ISI sequences? We address this issue of temporal sequence learning by a neuronal system utilizing spike timing dependent plasticity (STDP). We present a general architecture of neural circuitry that can perform the task of ISI recognition. The essential ingredients of this neural circuit, which we refer to as "interspike interval recognition unit" (IRU) are (i) a spike selection unit, the function of which is to selectively distribute input spikes to downstream IRU circuitry; (ii) a time-delay unit that can be tuned by STDP; and (iii) a detection unit, which is the output of the IRU and a spike from which indicates successful ISI recognition by the IRU. We present two distinct configurations for the time-delay circuit within the IRU using excitatory and inhibitory synapses, respectively, to produce a delayed output spike at time t_{0}+tau(R) in response to the input spike received at time t_{0} . R is the tunable parameter of the time-delay circuit that controls the timing of the delayed output spike. We discuss the forms of STDP rules for excitatory and inhibitory synapses, respectively, that allow for modulation of R for the IRU to perform its task of ISI recognition. We then present two specific implementations for the IRU circuitry, derived from the general architecture that can both learn the ISIs of a training sequence and then recognize the same ISI sequence when it is presented on subsequent occasions. PMID:18851076

  8. Representations of specific acoustic patterns in the auditory cortex and hippocampus.

    PubMed

    Kumar, Sukhbinder; Bonnici, Heidi M; Teki, Sundeep; Agus, Trevor R; Pressnitzer, Daniel; Maguire, Eleanor A; Griffiths, Timothy D

    2014-09-22

    Previous behavioural studies have shown that repeated presentation of a randomly chosen acoustic pattern leads to the unsupervised learning of some of its specific acoustic features. The objective of our study was to determine the neural substrate for the representation of freshly learnt acoustic patterns. Subjects first performed a behavioural task that resulted in the incidental learning of three different noise-like acoustic patterns. During subsequent high-resolution functional magnetic resonance imaging scanning, subjects were then exposed again to these three learnt patterns and to others that had not been learned. Multi-voxel pattern analysis was used to test if the learnt acoustic patterns could be 'decoded' from the patterns of activity in the auditory cortex and medial temporal lobe. We found that activity in planum temporale and the hippocampus reliably distinguished between the learnt acoustic patterns. Our results demonstrate that these structures are involved in the neural representation of specific acoustic patterns after they have been learnt. PMID:25100695

  9. Temporal pattern processing in songbirds.

    PubMed

    Comins, Jordan A; Gentner, Timothy Q

    2014-10-01

    Understanding how the brain perceives, organizes and uses patterned information is directly related to the neurobiology of language. Given the present limitations, such knowledge at the scale of neurons, neural circuits and neural populations can only come from non-human models, focusing on shared capacities that are relevant to language processing. Here we review recent advances in the behavioral and neural basis of temporal pattern processing of natural auditory communication signals in songbirds, focusing on European starlings. We suggest a general inhibitory circuit for contextual modulation that can act to control sensory representations based on patterning rules. PMID:25201176

  10. Writing magnetic patterns with surface acoustic waves

    SciTech Connect

    Li, Weiyang; Buford, Benjamin; Jander, Albrecht; Dhagat, Pallavi

    2014-05-07

    A novel patterning technique that creates magnetization patterns in a continuous magnetostrictive film with surface acoustic waves is demonstrated. Patterns of 10 μm wide stripes of alternating magnetization and a 3 μm dot of reversed magnetization are written using standing and focusing acoustic waves, respectively. The magnetization pattern is size-tunable, erasable, and rewritable by changing the magnetic field and acoustic power. This versatility, along with its solid-state implementation (no moving parts) and electronic control, renders it as a promising technique for application in magnetic recording, magnonic signal processing, magnetic particle manipulation, and spatial magneto-optical modulation.

  11. Diel patterns and temporal trends in spawning activities of Robust Redhorse and River Redhorse in Georgia, assessed using passive acoustic monitoring

    USGS Publications Warehouse

    Straight, Carrie A.; Jackson, C. Rhett; Freeman, Byron J.; Freeman, Mary C.

    2015-01-01

    The conservation of imperiled species depends upon understanding threats to the species at each stage of its life history. In the case of many imperiled migratory fishes, understanding how timing and environmental influences affect reproductive behavior could provide managers with information critical for species conservation. We used passive acoustic recorders to document spawning activities for two large-bodied catostomids (Robust Redhorse Moxostoma robustum in the Savannah and Broad rivers, Georgia, and River Redhorse M. carinatum in the Coosawattee River, Georgia) in relation to time of day, water temperature, discharge variation, moonlight, and weather. Robust Redhorse spawning activities in the Savannah and Broad rivers were more frequent at night or in the early morning (0100–0400 hours and 0800–1000 hours, respectively) and less frequent near midday (1300 hours). Spawning attempts in the Savannah and Broad rivers increased over a 3–4-d period and then declined. River Redhorse spawning activities in the Coosawattee River peaked on the first day of recording and declined over four subsequent days; diel patterns were less discernible, although moon illumination was positively associated with spawning rates, which was also observed for Robust Redhorses in the Savannah River. Spawning activity in the Savannah and Broad rivers was negatively associated with water temperature, and spawning activity increased in association with cloud cover in the Savannah River. A large variation in discharge was only measured in the flow-regulated Savannah River and was not associated with spawning attempts. To our knowledge, this is the first study to show diel and multiday patterns in spawning activities for anyMoxostoma species. These patterns and relationships between the environment and spawning activities could provide important information for the management of these species downstream of hydropower facilities.

  12. Segregation of complex acoustic scenes based on temporal coherence

    PubMed Central

    Teki, Sundeep; Chait, Maria; Kumar, Sukhbinder; Shamma, Shihab; Griffiths, Timothy D

    2013-01-01

    In contrast to the complex acoustic environments we encounter everyday, most studies of auditory segregation have used relatively simple signals. Here, we synthesized a new stimulus to examine the detection of coherent patterns (‘figures’) from overlapping ‘background’ signals. In a series of experiments, we demonstrate that human listeners are remarkably sensitive to the emergence of such figures and can tolerate a variety of spectral and temporal perturbations. This robust behavior is consistent with the existence of automatic auditory segregation mechanisms that are highly sensitive to correlations across frequency and time. The observed behavior cannot be explained purely on the basis of adaptation-based models used to explain the segregation of deterministic narrowband signals. We show that the present results are consistent with the predictions of a model of auditory perceptual organization based on temporal coherence. Our data thus support a role for temporal coherence as an organizational principle underlying auditory segregation. DOI: http://dx.doi.org/10.7554/eLife.00699.001 PMID:23898398

  13. Resurgence of Temporal Patterns of Responding

    ERIC Educational Resources Information Center

    Cancado, Carlos R. X.; Lattal, Kennon A.

    2011-01-01

    The resurgence of temporal patterns of key pecking by pigeons was investigated in two experiments. In Experiment 1, positively accelerated and linear patterns of responding were established on one key under a discrete-trial multiple fixed-interval variable-interval schedule. Subsequently, only responses on a second key produced reinforcers…

  14. Discrimination and identification of acoustic transient patterns

    NASA Astrophysics Data System (ADS)

    Ballas, J. A.; Howard, J. H., Jr.

    1981-08-01

    The relation between the discrimination and the identification of acoustic patterns can be addressed psychophysically or cognitively. The psychophysical approach predicts a monotonic relationship between performance on the two tasks. Cognitively, the relationship may depend upon the type of structure encoded from the patterns. Structure based upon similarities in runs could enhance discrimination but degrade identification. Hierarchical structural encoding might enhance both tasks. The relationship was investigated in three dual task experiments. In one experiment, trial and error learning was used whereas in the other two, observation of positive examples was used. All three experiments indicated that discrimination was superior to identification, and that the concurrent identification task improved discrimination performance above what has been obtained in single task discrimination studies. The effects of structure in the two tasks were equivocal but implied that the type of structured encoding is important and may be influenced by the procedure used to acquire the patterns.

  15. Temporal fringe pattern analysis with parallel computing

    SciTech Connect

    Tuck Wah Ng; Kar Tien Ang; Argentini, Gianluca

    2005-11-20

    Temporal fringe pattern analysis is invaluable in transient phenomena studies but necessitates long processing times. Here we describe a parallel computing strategy based on the single-program multiple-data model and hyperthreading processor technology to reduce the execution time. In a two-node cluster workstation configuration we found that execution periods were reduced by 1.6 times when four virtual processors were used. To allow even lower execution times with an increasing number of processors, the time allocated for data transfer, data read, and waiting should be minimized. Parallel computing is found here to present a feasible approach to reduce execution times in temporal fringe pattern analysis.

  16. Pulses, patterns and paths: neurobiology of acoustic behaviour in crickets.

    PubMed

    Hedwig, Berthold

    2006-07-01

    Crickets use acoustic communication for pair formation. Males sing with rhythmical movements of their wings and the mute females approach the singing males by phonotaxis. Females walking on a trackball rapidly steer towards single sound pulses when exposed to split-song paradigms. Their walking path emerges from consecutive reactive steering responses, which show no temporal selectivity. Temporal pattern recognition is tuned to the species-specific syllable rate and gradually changes the gain of auditory steering. If pattern recognition is based on instantaneous discharge rate coding, then the tuning to the species-specific song pattern may already be present at the level of thoracic interneurons. During the processing of song patterns, changes in cytosolic Ca(2+ )concentrations occur in phase with the chirp rhythm in the local auditory interneurone. Male singing behaviour is controlled by command neurons descending from the brain. The neuropil controlling singing behaviour is located in the anterior protocerebrum next to the mushroom bodies. Singing behaviour is released by injection of cholinergic agonists and inhibited by gamma-butyric acid (GABA). During singing, the sensitivity of the peripheral auditory system remains unchanged but a corollary discharge inhibits auditory processing in afferents and interneurons within the prothoracic auditory neuropil and prevents the auditory neurons from desensitisation. PMID:16523340

  17. Acoustic and Temporal Partitioning of Cicada Assemblages in City and Mountain Environments

    PubMed Central

    Shieh, Bao-Sen; Liang, Shih-Hsiung; Chiu, Yuh-Wen

    2015-01-01

    Comparing adaptations to noisy city environments with those to natural mountain environments on the community level can provide significant insights that allow an understanding of the impact of anthropogenic noise on invertebrates that employ loud calling songs for mate attraction, especially when each species has its distinct song, as in the case of cicadas. In this study, we investigated the partitioning strategy of cicada assemblages in city and mountain environments by comparing the acoustic features and calling activity patterns of each species, recorded using automated digital recording systems. Our comparison of activity patterns of seasonal and diel calling revealed that there was no significant temporal partitioning of cicada assemblages in either environment. In addition, there was no correlation between the acoustic distance based on spectral features and temporal segregation. Heterospecific spectral overlap was low in both city and mountain environments, although city and mountain cicada assemblages were subject to significantly different levels of anthropogenic or interspecific noise. Furthermore, for the common species found in both environments, the calling activity patterns at both seasonal and diel time scales were significantly consistent across sites and across environments. We suggest that the temporal calling activity is constrained by endogenous factors for each species and is less flexible in response to external factors, such as anthropogenic noise. As a result, cicada assemblages in city environments with low species diversity do not demonstrate a more significant temporal partitioning than those in mountain environments with high species diversity. PMID:25590620

  18. Auditory Temporal Pattern Discrimination and Reading Ability

    ERIC Educational Resources Information Center

    McAnally, Ken I.; Castles, Anne; Bannister, Susan

    2004-01-01

    The relation between reading ability and performance on an auditory temporal pattern discrimination task was investigated in children who were either good or delayed readers. The stimuli in the primary task consisted of sequences of tones, alternating between high and low frequencies. The threshold interstimulus interval (ISI) for discrimination…

  19. Temporal sleep patterns in adults using actigraph.

    PubMed

    Matuzaki, Lia; Santos-Silva, Rogerio; Marqueze, Elaine Cristina; de Castro Moreno, Claudia Roberta; Tufik, Sergio; Bittencourt, Lia

    2014-09-01

    The aim of the present study was to characterize the temporal patterns of sleep and wakefulness in a sample of the adult subjects from São Paulo city. All subjects filled the Morningness/Eveningness Questionnaire (MEQ) and wore an actigraph for at least three consecutive days. A total of 359 subjects were considered for the analyses. The mean age was 43±14 years, the mean body mass index was 26.7±5.7 kg/m(2), and 60% were female. The mean MEQ score was 58.0±10.7. The sleep pattern evaluated by the actigraphic analyses showed that 92% had a monophasic sleep pattern, 7% biphasic, and 1% polyphasic sleep pattern. Cluster analysis, based on time to sleep onset, sleep efficiency, sleep latency, and total sleep time, was able to identify three different groups denominated: morning type, evening type, and undefined type. Morning type subjects were more frequent, older, and had higher MEQ scores than evening type subjects. Our results showed that the actigraph objectively assessed the sleep-wake cycle and was able to discriminate between morning and evening type individuals. These findings suggest that the actigraph could be a valuable tool for assessing temporal sleep patterns, including the circadian preferences. PMID:26483920

  20. Temporal sleep patterns in adults using actigraph

    PubMed Central

    Matuzaki, Lia; Santos-Silva, Rogerio; Marqueze, Elaine Cristina; de Castro Moreno, Claudia Roberta; Tufik, Sergio; Bittencourt, Lia

    2014-01-01

    The aim of the present study was to characterize the temporal patterns of sleep and wakefulness in a sample of the adult subjects from São Paulo city. All subjects filled the Morningness/Eveningness Questionnaire (MEQ) and wore an actigraph for at least three consecutive days. A total of 359 subjects were considered for the analyses. The mean age was 43±14 years, the mean body mass index was 26.7±5.7 kg/m2, and 60% were female. The mean MEQ score was 58.0±10.7. The sleep pattern evaluated by the actigraphic analyses showed that 92% had a monophasic sleep pattern, 7% biphasic, and 1% polyphasic sleep pattern. Cluster analysis, based on time to sleep onset, sleep efficiency, sleep latency, and total sleep time, was able to identify three different groups denominated: morning type, evening type, and undefined type. Morning type subjects were more frequent, older, and had higher MEQ scores than evening type subjects. Our results showed that the actigraph objectively assessed the sleep-wake cycle and was able to discriminate between morning and evening type individuals. These findings suggest that the actigraph could be a valuable tool for assessing temporal sleep patterns, including the circadian preferences. PMID:26483920

  1. Neural representation of three-dimensional acoustic space in the human temporal lobe

    PubMed Central

    Zhang, Xiaolu; Zhang, Qingtian; Hu, Xiaolin; Zhang, Bo

    2015-01-01

    Sound localization is an important function of the human brain, but the underlying cortical mechanisms remain unclear. In this study, we recorded auditory stimuli in three-dimensional space and then replayed the stimuli through earphones during functional magnetic resonance imaging (fMRI). By employing a machine learning algorithm, we successfully decoded sound location from the blood oxygenation level-dependent signals in the temporal lobe. Analysis of the data revealed that different cortical patterns were evoked by sounds from different locations. Specifically, discrimination of sound location along the abscissa axis evoked robust responses in the left posterior superior temporal gyrus (STG) and right mid-STG, discrimination along the elevation (EL) axis evoked robust responses in the left posterior middle temporal lobe (MTL) and right STG, and discrimination along the ordinate axis evoked robust responses in the left mid-MTL and right mid-STG. These results support a distributed representation of acoustic space in human cortex. PMID:25932011

  2. Pattern-formation under acoustic driving forces

    NASA Astrophysics Data System (ADS)

    Valverde, Jose Manuel

    2015-07-01

    Chemical and metallurgical processes enhanced by high intensity acoustic waves, thermoacoustic engines and refrigerators, fuel rods in nuclear reactors, heat exchanger tubes, offshore and vibrating structures, solar thermal collectors, acoustic levitators, microfluidic devices, cycling, musical acoustics, blood flow through veins/arteries, hearing in the mammalian ear, carbon nanotube loudspeakers, etc. The evolution of a myriad of processes involving the oscillation of viscous fluids in the presence of solid boundaries is up to a certain extent influenced by acoustic streaming. In addition to the sound field, viscous energy dissipation at the fluid-solid boundary causes a time-independent fluid circulation, which can lead to a significant enhancement of heat, mass and momentum transfer at large oscillation amplitudes. A particularly relevant phenomenon that can be notably affected by acoustic streaming is the promotion of sound waves by temperature gradients or viceversa (thermoacoustics), which is at the basis of potentially efficient and environmental friendly engines and refrigerators that have attracted a renewed interest in the last years. In the present manuscript, historical developments and the underlying basic physics behind acoustic streaming and thermoacoustics are reviewed from an unifying perspective.

  3. Multimodal far-field acoustic radiation pattern: An approximate equation

    NASA Technical Reports Server (NTRS)

    Rice, E. J.

    1977-01-01

    The far-field sound radiation theory for a circular duct was studied for both single mode and multimodal inputs. The investigation was intended to develop a method to determine the acoustic power produced by turbofans as a function of mode cut-off ratio. With reasonable simplifying assumptions the single mode radiation pattern was shown to be reducible to a function of mode cut-off ratio only. With modal cut-off ratio as the dominant variable, multimodal radiation patterns can be reduced to a simple explicit expression. This approximate expression provides excellent agreement with an exact calculation of the sound radiation pattern using equal acoustic power per mode.

  4. Acoustic change responses to amplitude modulation: a method to quantify cortical temporal processing and hemispheric asymmetry

    PubMed Central

    Han, Ji Hye; Dimitrijevic, Andrew

    2015-01-01

    Objective: Sound modulation is a critical temporal cue for the perception of speech and environmental sounds. To examine auditory cortical responses to sound modulation, we developed an acoustic change stimulus involving amplitude modulation (AM) of ongoing noise. The AM transitions in this stimulus evoked an acoustic change complex (ACC) that was examined parametrically in terms of rate and depth of modulation and hemispheric symmetry. Methods: Auditory cortical potentials were recorded from 64 scalp electrodes during passive listening in two conditions: (1) ACC from white noise to 4, 40, 300 Hz AM, with varying AM depths of 100, 50, 25% lasting 1 s and (2) 1 s AM noise bursts at the same modulation rate. Behavioral measures included AM detection from an attend ACC condition and AM depth thresholds (i.e., a temporal modulation transfer function, TMTF). Results: The N1 response of the ACC was large to 4 and 40 Hz and small to the 300 Hz AM. In contrast, the opposite pattern was observed with bursts of AM showing larger responses with increases in AM rate. Brain source modeling showed significant hemispheric asymmetry such that 4 and 40 Hz ACC responses were dominated by right and left hemispheres respectively. Conclusion: N1 responses to the ACC resembled a low pass filter shape similar to a behavioral TMTF. In the ACC paradigm, the only stimulus parameter that changes is AM and therefore the N1 response provides an index for this AM change. In contrast, an AM burst stimulus contains both AM and level changes and is likely dominated by the rise time of the stimulus. The hemispheric differences are consistent with the asymmetric sampling in time hypothesis suggesting that the different hemispheres preferentially sample acoustic time across different time windows. Significance: The ACC provides a novel approach to studying temporal processing at the level of cortex and provides further evidence of hemispheric specialization for fast and slow stimuli. PMID:25717291

  5. Surface wave patterns on acoustically levitated viscous liquid alloys

    NASA Astrophysics Data System (ADS)

    Hong, Z. Y.; Yan, N.; Geng, D. L.; Wei, B.

    2014-04-01

    We demonstrate two different kinds of surface wave patterns on viscous liquid alloys, which are melted and solidified under acoustic levitation condition. These patterns are consistent with the morphologies of standing capillary waves and ensembles of oscillons, respectively. The rapid solidification of two-dimensional liquid alloy surfaces may hold them down.

  6. Temporal variability patterns in solar radiation estimations

    NASA Astrophysics Data System (ADS)

    Vindel, José M.; Navarro, Ana A.; Valenzuela, Rita X.; Zarzalejo, Luis F.

    2016-06-01

    In this work, solar radiation estimations obtained from a satellite and a numerical weather prediction model in mainland Spain have been compared. Similar comparisons have been formerly carried out, but in this case, the methodology used is different: the temporal variability of both sources of estimation has been compared with the annual evolution of the radiation associated to the different study climate zones. The methodology is based on obtaining behavior patterns, using a Principal Component Analysis, following the annual evolution of solar radiation estimations. Indeed, the adjustment degree to these patterns in each point (assessed from maps of correlation) may be associated with the annual radiation variation (assessed from the interquartile range), which is associated, in turn, to different climate zones. In addition, the goodness of each estimation source has been assessed comparing it with data obtained from the radiation measurements in ground by pyranometers. For the study, radiation data from Satellite Application Facilities and data corresponding to the reanalysis carried out by the European Centre for Medium-Range Weather Forecasts have been used.

  7. Acoustic Predictors of Intelligibility for Segmentally Interrupted Speech: Temporal Envelope, Voicing, and Duration

    ERIC Educational Resources Information Center

    Fogerty, Daniel

    2013-01-01

    Purpose: Temporal interruption limits the perception of speech to isolated temporal glimpses. An analysis was conducted to determine the acoustic parameter that best predicts speech recognition from temporal fragments that preserve different types of speech information--namely, consonants and vowels. Method: Young listeners with normal hearing…

  8. Temporal Patterns of Behavior from the Scheduling of Psychology Quizzes

    ERIC Educational Resources Information Center

    Jarmolowicz, David P.; Hayashi, Yusuke; St. Peter Pipkin, Claire

    2010-01-01

    Temporal patterns of behavior have been observed in real-life performances such as bill passing in the U.S. Congress, in-class studying, and quiz taking. However, the practical utility of understanding these patterns has not been evaluated. The current study demonstrated the presence of temporal patterns of quiz taking in a university-level…

  9. Temporal analysis of acoustic emission from a plunged granular bed

    NASA Astrophysics Data System (ADS)

    Tsuji, Daisuke; Katsuragi, Hiroaki

    2015-10-01

    The statistical property of acoustic emission (AE) events from a plunged granular bed is analyzed by means of actual-time and natural-time analyses. These temporal analysis methods allow us to investigate the details of AE events that follow a power-law distribution. In the actual-time analysis, the calm-time distribution, and the decay of the event-occurrence density after the largest event (i.e., the Omori-Utsu law) are measured. Although the former always shows a power-law form, the latter does not always obey a power law. Markovianity of the event-occurrence process is also verified using a scaling law by assuming that both of them exhibit power laws. We find that the effective shear strain rate is a key parameter to classify the emergence rate of power-law nature and Markovianity in granular AE events. For the natural-time analysis, the existence of self-organized critical states is revealed by calculating the variance of natural time χk, where k th natural time of N events is defined as χk=k /N . In addition, the energy difference distribution can be fitted by a q -Gaussian form, which is also consistent with the criticality of the system.

  10. Scaling properties in temporal patterns of schizophrenia

    NASA Astrophysics Data System (ADS)

    Dünki, R. M.; Ambühl, B.

    1996-02-01

    Investigations into the patterns of schizophrenia reveal evidence of scaling properties in temporal behaviour. This is shown in the spectral properties of mid-range and long-range (up to two years) daily recordings from a sample of patients drawn at the therapeutic dwelling SOTERIA (Ambühl et al., in: Springer Series in Synergetics, Vol. 58, eds. Tschacher et al. (Springer, Berlin, 1992) pp. 195-203 and references therein) of the Psychiatric University Hospital in Bern. The therapeutic setting is unique in that it tries to avoid treatment by medication. Power law behaviour has been found within fractal walk analysis and Fourier spectra for the daily fluctuations. A simple dynamic principle, based on a generic intermittency model, is put in relation to these time series thus predicting an additional scaling law for the distribution P( T) of time spans T between successive hospitalizations. Testing this hypothesis with our data shows only insignificant deviations. A possible role of this dynamic principle in the risk assignment of psychotic phases is explored with the help of an example.

  11. Coding of multisensory temporal patterns in human superior temporal sulcus

    PubMed Central

    Noesselt, Tömme; Bergmann, Daniel; Heinze, Hans-Jochen; Münte, Thomas; Spence, Charles

    2012-01-01

    Philosophers, psychologists, and neuroscientists have long been interested in how the temporal aspects of perception are represented in the brain. In the present study, we investigated the neural basis of the temporal perception of synchrony/asynchrony for audiovisual speech stimuli using functional magnetic resonance imaging (fMRI). Subjects judged the temporal relation of (a)synchronous audiovisual speech streams, and indicated any changes in their perception of the stimuli over time. Differential hemodynamic responses for synchronous versus asynchronous stimuli were observed in the multisensory superior temporal sulcus complex (mSTS-c) and prefrontal cortex. Within mSTS-c we found adjacent regions expressing an enhanced BOLD-response to the different physical (a)synchrony conditions. These regions were further modulated by the subjects' perceptual state. By calculating the distances between the modulated regions within mSTS-c in single-subjects we demonstrate that the “auditory leading (AL)” and “visual leading (VL) areas” lie closer to “synchrony areas” than to each other. Moreover, analysis of interregional connectivity indicates a stronger functional connection between multisensory prefrontal cortex and mSTS-c during the perception of asynchrony. Taken together, these results therefore suggest the presence of distinct sub-regions within the human STS-c for the maintenance of temporal relations for audiovisual speech stimuli plus differential functional connectivity with prefrontal regions. The respective local activity in mSTS-c is dependent both upon the physical properties of the stimuli presented and upon the subjects' perception of (a)synchrony. PMID:22973202

  12. Tunable Nanowire Patterning Using Standing Surface Acoustic Waves

    PubMed Central

    Chen, Yuchao; Ding, Xiaoyun; Lin, Sz-Chin Steven; Yang, Shikuan; Huang, Po-Hsun; Nama, Nitesh; Zhao, Yanhui; Nawaz, Ahmad Ahsan; Guo, Feng; Wang, Wei; Gu, Yeyi; Mallouk, Thomas E.; Huang, Tony Jun

    2014-01-01

    Patterning of nanowires in a controllable, tunable manner is important for the fabrication of functional nanodevices. Here we present a simple approach for tunable nanowire patterning using standing surface acoustic waves (SSAW). This technique allows for the construction of large-scale nanowire arrays with well-controlled patterning geometry and spacing within 5 seconds. In this approach, SSAWs were generated by interdigital transducers (IDTs), which induced a periodic alternating current (AC) electric field on the piezoelectric substrate and consequently patterned metallic nanowires in suspension. The patterns could be deposited onto the substrate after the liquid evaporated. By controlling the distribution of the SSAW field, metallic nanowires were assembled into different patterns including parallel and perpendicular arrays. The spacing of the nanowire arrays could be tuned by controlling the frequency of the surface acoustic waves. Additionally, we observed 3D spark-shape nanowire patterns in the SSAW field. The SSAW-based nanowire-patterning technique presented here possesses several advantages over alternative patterning approaches, including high versatility, tunability, and efficiency, making it promising for device applications. PMID:23540330

  13. Tunable nanowire patterning using standing surface acoustic waves.

    PubMed

    Chen, Yuchao; Ding, Xiaoyun; Steven Lin, Sz-Chin; Yang, Shikuan; Huang, Po-Hsun; Nama, Nitesh; Zhao, Yanhui; Nawaz, Ahmad Ahsan; Guo, Feng; Wang, Wei; Gu, Yeyi; Mallouk, Thomas E; Huang, Tony Jun

    2013-04-23

    Patterning of nanowires in a controllable, tunable manner is important for the fabrication of functional nanodevices. Here we present a simple approach for tunable nanowire patterning using standing surface acoustic waves (SSAW). This technique allows for the construction of large-scale nanowire arrays with well-controlled patterning geometry and spacing within 5 s. In this approach, SSAWs were generated by interdigital transducers, which induced a periodic alternating current (ac) electric field on the piezoelectric substrate and consequently patterned metallic nanowires in suspension. The patterns could be deposited onto the substrate after the liquid evaporated. By controlling the distribution of the SSAW field, metallic nanowires were assembled into different patterns including parallel and perpendicular arrays. The spacing of the nanowire arrays could be tuned by controlling the frequency of the surface acoustic waves. Additionally, we observed 3D spark-shaped nanowire patterns in the SSAW field. The SSAW-based nanowire-patterning technique presented here possesses several advantages over alternative patterning approaches, including high versatility, tunability, and efficiency, making it promising for device applications. PMID:23540330

  14. Tunable acoustic radiation pattern assisted by effective impedance boundary

    NASA Astrophysics Data System (ADS)

    Qian, Feng; Quan, Li; Wang, Li-Wei; Liu, Xiao-Zhou; Gong, Xiu-Fen

    2016-02-01

    The acoustic wave propagation from a two-dimensional subwavelength slit surrounded by metal plates decorated with Helmholtz resonators (HRs) is investigated both numerically and experimentally in this work. Owing to the presence of HRs, the effective impedance of metal surface boundary can be manipulated. By optimizing the distribution of HRs, the asymmetric effective impedance boundary will be obtained, which contributes to generating tunable acoustic radiation pattern such as directional acoustic beaming. These dipole-like radiation patterns have high radiation efficiency, no fingerprint of sidelobes, and a wide tunable range of the radiation pattern directivity angle which can be steered by the spatial displacements of HRs. Project supported by the National Basic Research Program of China (Grant Nos. 2012CB921504 and 2011CB707902), the National Natural Science Foundation of China (Grant No.11474160), the Fundamental Research Funds for Central Universities, China (Grant No. 020414380001), the State Key Laboratory of Acoustics, Chinese Academy of Sciences (Grant No. SKLOA201401), the Priority Academic Program Development of Jiangsu Higher Education Institutions, and the Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry.

  15. Comparison of acoustic and net sampling systems to determine patterns in zooplankton distribution

    NASA Astrophysics Data System (ADS)

    Sutor, Malinda; Cowles, Timothy J.; Peterson, William T.; Lamb, Jesse

    2005-10-01

    An analysis was conducted of the strengths and limitations of acoustic methods to determine biomass and taxonomic distribution patterns over the Oregon continental shelf. Measurements of volume backscatter from two different acoustic instruments were compared with each other and with predicted volume backscatter calculated from a coincident net tow. Spatially and temporally coincident data were collected from a six-frequency bioacoustic system (Tracor Acoustic Profiling System (TAPS)) and from a 1 m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The combined net/acoustic tows were conducted over the Oregon continental shelf in August 2001, during both day and night. The TAPS was mounted on the upper frame of the MOCNESS and ensonified a volume of water directly in front of the net mouth. A four-frequency echosounder (Hydroacoustic Technologies Inc. (HTI)) with downward looking transducers was towed off the port side of the ship during the MOCNESS/TAPS tows. Fine-scale vertical distributions of zooplankton that were resolved acoustically were not apparent within the integrated depth strata of the individual MOCNESS net samples. The taxonomic and size composition of the zooplankton community had strong effects on volume backscatter (SV), although the magnitude of SV was not linearly related to zooplankton biomass. Predicted SV calculated from scattering models and the contents of the MOCNESS nets agreed best (sometimes within 5 dB) with measured SV from the TAPS at 420 and 700 kHz and measured SV at 420 kHz from the HTI.

  16. 1987 WET DEPOSITION TEMPORAL AND SPATIAL PATTERNS IN NORTH AMERICA

    EPA Science Inventory

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1987 and spatial patterns for 1987. he report investigates the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate...

  17. Spatial, Temporal and Spatio-Temporal Patterns of Maritime Piracy

    PubMed Central

    Marchione, Elio

    2013-01-01

    Objectives: To examine patterns in the timing and location of incidents of maritime piracy to see whether, like many urban crimes, attacks cluster in space and time. Methods: Data for all incidents of maritime piracy worldwide recorded by the National Geospatial Intelligence Agency are analyzed using time-series models and methods originally developed to detect disease contagion. Results: At the macro level, analyses suggest that incidents of pirate attacks are concentrated in five subregions of the earth’s oceans and that the time series for these different subregions differ. At the micro level, analyses suggest that for the last 16 years (or more), pirate attacks appear to cluster in space and time suggesting that patterns are not static but are also not random. Conclusions: Much like other types of crime, pirate attacks cluster in space, and following an attack at one location the risk of others at the same location or nearby is temporarily elevated. The identification of such regularities has implications for the understanding of maritime piracy and for predicting the future locations of attacks. PMID:25076796

  18. Spatial and temporal variability of zooplankton off New Caledonia (Southwestern Pacific) from acoustics and net measurements

    NASA Astrophysics Data System (ADS)

    Smeti, Houssem; Pagano, Marc; Menkes, Christophe; Lebourges-Dhaussy, Anne; Hunt, Brian P. V.; Allain, Valerie; Rodier, Martine; de Boissieu, Florian; Kestenare, Elodie; Sammari, Cherif

    2015-04-01

    Spatial and temporal distribution of zooplankton off New Caledonia in the eastern Coral Sea was studied during two multidisciplinary cruises in 2011, during the cool and the hot seasons. Acoustic measurements of zooplankton were made using a shipborne acoustic Doppler current profiler (S-ADCP), a scientific echosounder and a Tracor acoustic profiling system (TAPS). Relative backscatter from ADCP was converted to biomass estimates using zooplankton weights from net-samples collected during the cruises. Zooplankton biomass was estimated using four methods: weighing, digital imaging (ZooScan), ADCP and TAPS. Significant correlations were found between the different biomass estimators and between the backscatters of the ADCP and the echosounder. There was a consistent diel pattern in ADCP derived biomass and echosounder backscatter resulting from the diel vertical migration (DVM) of zooplankton. Higher DVM amplitudes were associated with higher abundance of small zooplankton and cold waters to the south of the study area, while lower DVM amplitudes in the north were associated with warmer waters and higher abundance of large organisms. Zooplankton was largely dominated by copepods (71-73%) among which calanoids prevailed (40-42%), with Paracalanus spp. as the dominant species (16-17%). Overall, zooplankton exhibited low abundance and biomass (mean night dry biomass of 4.7 ± 2.2 mg m3 during the cool season and 2.4 ± 0.4 mg m3 during the hot season) but high richness and diversity (Shannon index ˜4). Substantially enhanced biomass and abundance appeared to be episodically associated with mesoscale features contributing to shape a rather patchy zooplankton distribution.

  19. Temporal Patterns of Communication in the Workplace

    ERIC Educational Resources Information Center

    Su, Norman Makoto

    2009-01-01

    In this dissertation, we report on results of an in-depth observational study to understand the temporal dimension of communication in the workplace. By employing the "shadowing" method for in situ to-the-second data gathering of information workers' behaviors, we gained a detailed snapshot of informants' workdays, "warts and all." Our…

  20. Finding Spatio-Temporal Patterns in Large Sensor Datasets

    ERIC Educational Resources Information Center

    McGuire, Michael Patrick

    2010-01-01

    Spatial or temporal data mining tasks are performed in the context of the relevant space, defined by a spatial neighborhood, and the relevant time period, defined by a specific time interval. Furthermore, when mining large spatio-temporal datasets, interesting patterns typically emerge where the dataset is most dynamic. This dissertation is…

  1. Spatio-temporal source modeling of evoked potentials to acoustic and cochlear implant stimulation.

    PubMed

    Ponton, C W; Don, M; Waring, M D; Eggermont, J J; Masuda, A

    1993-01-01

    Spatio-temporal source modeling (STSM) of event-related potentials was used to estimate the loci and characteristics of cortical activity evoked by acoustic stimulation in normal hearing subjects and by electrical stimulation in cochlear implant (CI) subjects. In both groups of subjects, source solutions obtained for the N1/P2 complex were located in the superior half of the temporal lobe in the head model. Results indicate that it may be possible to determine whether stimulation of different implant channels activates different regions of cochleotopically organized auditory cortex. Auditory system activation can be assessed further by examining the characteristics of the source wave forms. For example, subjects whose cochlear implants provided auditory sensations and normal hearing subjects had similar source activity. In contrast, a subject in whom implant activation evoked eyelid movements exhibited different source wave forms. STSM analysis may provide an electrophysiological technique for guiding rehabilitation programs based on the capabilities of the individual implant user and for disentangling the complex response patterns to electrical stimulation of the brain. PMID:7694834

  2. Eleutherodactylus frogs show frequency but no temporal partitioning: implications for the acoustic niche hypothesis

    PubMed Central

    2014-01-01

    Individuals in acoustic communities compete for the use of the sound resource for communication, a problem that can be studied as niche competition. The acoustic niche hypothesis presents a way to study the partitioning of the resource, but the studies have to take into account the three dimensions of this niche: time, acoustic frequency, and space. I used an Automated Digital Recording System to determine the partitioning of time and acoustic frequency of eight frogs of the genus Eleutherodactylus from Puerto Rico. The calling activity was measured using a calling index. The community exhibited no temporal partitioning since most species called at the same time, between sunset and midnight. The species partitioned the acoustic frequency of their signals, which, in addition to the microhabitat partitioning, can provide some insight into how these species deal with the problem. This data also suggest that monitoring projects with this group should take place only before midnight to avoid false negatives. PMID:25101228

  3. Spectral and temporal resolutions of information-bearing acoustic changes for understanding vocoded sentencesa)

    PubMed Central

    Stilp, Christian E.; Goupell, Matthew J.

    2015-01-01

    Short-time spectral changes in the speech signal are important for understanding noise-vocoded sentences. These information-bearing acoustic changes, measured using cochlea-scaled entropy in cochlear implant simulations [CSECI; Stilp et al. (2013). J. Acoust. Soc. Am. 133(2), EL136–EL141; Stilp (2014). J. Acoust. Soc. Am. 135(3), 1518–1529], may offer better understanding of speech perception by cochlear implant (CI) users. However, perceptual importance of CSECI for normal-hearing listeners was tested at only one spectral resolution and one temporal resolution, limiting generalizability of results to CI users. Here, experiments investigated the importance of these informational changes for understanding noise-vocoded sentences at different spectral resolutions (4–24 spectral channels; Experiment 1), temporal resolutions (4–64 Hz cutoff for low-pass filters that extracted amplitude envelopes; Experiment 2), or when both parameters varied (6–12 channels, 8–32 Hz; Experiment 3). Sentence intelligibility was reduced more by replacing high-CSECI intervals with noise than replacing low-CSECI intervals, but only when sentences had sufficient spectral and/or temporal resolution. High-CSECI intervals were more important for speech understanding as spectral resolution worsened and temporal resolution improved. Trade-offs between CSECI and intermediate spectral and temporal resolutions were minimal. These results suggest that signal processing strategies that emphasize information-bearing acoustic changes in speech may improve speech perception for CI users. PMID:25698018

  4. Analysis of brain patterns using temporal measures

    DOEpatents

    Georgopoulos, Apostolos

    2015-08-11

    A set of brain data representing a time series of neurophysiologic activity acquired by spatially distributed sensors arranged to detect neural signaling of a brain (such as by the use of magnetoencephalography) is obtained. The set of brain data is processed to obtain a dynamic brain model based on a set of statistically-independent temporal measures, such as partial cross correlations, among groupings of different time series within the set of brain data. The dynamic brain model represents interactions between neural populations of the brain occurring close in time, such as with zero lag, for example. The dynamic brain model can be analyzed to obtain the neurophysiologic assessment of the brain. Data processing techniques may be used to assess structural or neurochemical brain pathologies.

  5. Rainfall redistribution in a tropical forest: Spatial and temporal patterns

    NASA Astrophysics Data System (ADS)

    Zimmermann, Alexander; Zimmermann, Beate; Elsenbeer, Helmut

    2009-11-01

    The investigation of throughfall patterns has received considerable interest over the last decades. And yet, the geographical bias of pertinent previous studies and their methodologies and approaches to data analysis cast a doubt on the general validity of claims regarding spatial and temporal patterns of throughfall. We employed 220 collectors in a 1-ha plot of semideciduous tropical rain forest in Panama and sampled throughfall during a period of 14 months. Our analysis of spatial patterns is based on 60 data sets, whereas the temporal analysis comprises 91 events. Both data sets show skewed frequency distributions. When skewness arises from large outliers, the classical, nonrobust variogram estimator overestimates the sill variance and, in some cases, even induces spurious autocorrelation structures. In these situations, robust variogram estimation techniques offer a solution. Throughfall in our plot typically displayed no or only weak spatial autocorrelations. In contrast, temporal correlations were strong, that is, wet and dry locations persisted over consecutive wet seasons. Interestingly, seasonality and hence deciduousness had no influence on spatial and temporal patterns. We argue that if throughfall patterns are to have any explanatory power with respect to patterns of near-surface processes, data analytical artifacts must be ruled out lest spurious correlation be confounded with causality; furthermore, temporal stability over the domain of interest is essential.

  6. Acoustic centering of sources with high-order radiation patterns.

    PubMed

    Shabtai, Noam R; Vorländer, Michael

    2015-04-01

    Surrounding spherical microphone arrays have recently been used in order to model the radiation pattern of acoustic sources that are assumed to be at the center of the array. Source centering algorithms are applied to the measurements in order to reduce the negative effect of acoustic source misalignment with regard to the physical center of the microphone array. Recent works aim to minimize the energy that is contained in the high-order coefficients of the radiation pattern in the spherical harmonics domain, in order to directly address the problem of increased order and spatial aliasing resulted by this misalignment. However, objective functions which directly minimize the norm of these coefficients were shown to be convex only when employed on sources with low-order radiation patterns. This work presents a source centering algorithm that operates on plane sections and aims to achieve a convex objective function on every plane section. The results of the proposed algorithm are shown to be more convex than the previous algorithms for sources with higher-order radiation pattern, usually at higher frequencies. PMID:25920846

  7. Complex temporal and spatial patterns in nonequilibrium systems

    SciTech Connect

    Swinney, H.L.

    1991-09-01

    Dynamical systems methods are being developed and used to characterize the formation and evolution of temporal and spatial patterns in systems maintained far from equilibrium. In particular, experiments and analyses are considering electrodeposition of fractal metallic clusters, pattern formation in reaction-diffusion systems, and the primary instabilities of some fluid flows. Novel reactors have been developed to search for chemical patterns (spatial variations in the chemical composition), and sustained patterns have been found in several different one- and two-dimensional geometries. Bifurcations in these patterns are studied by varying control parameters, e.g., the concentrations of the feed chemicals or the temperature. The observed two-dimensional chemical patterns range from the stationary patterns, similar to those predicted by Turing in 1952 but not observed until 1990, to chemical turbulence, which is characterized by large numbers of defects and a rapid decay of spatial correlations. These provide general insights into the formation of spatiotemporal patterns in nonequilibrium systems.

  8. Effect of the temporal pattern of a given noise dose on TTS in guinea pigs.

    PubMed

    Buck, K; Dancer, A; Franke, R

    1984-10-01

    To show the effect of the temporal pattern of acoustic stimulation on TTS 15 min, guinea pigs were subjected to isoenergetic noises with the same spectrum. The exposures in a first experimental series were continuous noises and noise bursts. The continuous noise was presented with different durations and levels but always with the same energy. The noise burst stimulation consisted of a constant number of bursts with different interstimulus intervals. Both duration and repetition rate were shown to affect the TTS 15 min measured for these isoenergetic stimuli. A duration of 225 to 1800 s and a repetition rate of one per second produced the greatest TTS 15 min. In a second experimental series continuous noise and acoustic impulses with the same spectrum and 100-Hz repetition rate were presented at different levels. In this case the waveform of the stimulus (phase spectrum) was shown to have an effect on TTS 15 min. PMID:6501705

  9. Acoustical Survey of Methane Plumes on North Hydrate Ridge: Constraining Temporal and Spatial Characteristics.

    NASA Astrophysics Data System (ADS)

    Kannberg, P. K.; Trehu, A. M.

    2008-12-01

    While methane plumes associated with hydrate formations have been acoustically imaged before, little is known about their temporal characteristics. Previous acoustic surveys have focused on determining plume location, but as far as we know, multiple, repeated surveys of the same plume have not been done prior to the survey presented here. In July 2008, we acquired sixteen identical surveys within 19 hours over the northern summit of Hydrate Ridge in the Cascadia accretionary complex using the onboard 3.5 and 12 kHz echosounders. As in previous studies, the plumes were invisible to the 3.5 kHz echosounder and clearly imaged with 12 kHz. Seafloor depth in this region is ~600 m. Three distinct plumes were detected close to where plumes were located by Heeschen et al. (2003) a decade ago. Two of the plumes disappeared at ~520 m water depth, which is the depth of the top of the gas hydrate stability as determined from CTD casts obtained during the cruise. This supports the conclusion of Heeschen et al. (2003) that the bubbles are armored by gas hydrate and that they dissolve in the water column when they leave the hydrate stability zone. One of the plumes near the northern summit, however, extended through this boundary to at least 400 m (the shallowest depth recorded). A similar phenomenon was observed in methane plumes in the Gulf of Mexico, where the methane was found to be armored by an oil skin. In addition to the steady plumes, two discrete "burps" were observed. One "burp" occurred approximately 600 m to the SSW of the northern summit. This was followed by a second strong event 300m to the north an hour later. To evaluate temporal and spatial patterns, we summed the power of the backscattered signal in different depth windows for each survey. We present the results as a movie in which the backscatter power is shown in map view as a function of time. The surveys encompassed two complete tidal cycles, but no correlation between plume location or intensity and tides

  10. Speaker recognition with temporal cues in acoustic and electric hearing

    NASA Astrophysics Data System (ADS)

    Vongphoe, Michael; Zeng, Fan-Gang

    2005-08-01

    Natural spoken language processing includes not only speech recognition but also identification of the speaker's gender, age, emotional, and social status. Our purpose in this study is to evaluate whether temporal cues are sufficient to support both speech and speaker recognition. Ten cochlear-implant and six normal-hearing subjects were presented with vowel tokens spoken by three men, three women, two boys, and two girls. In one condition, the subject was asked to recognize the vowel. In the other condition, the subject was asked to identify the speaker. Extensive training was provided for the speaker recognition task. Normal-hearing subjects achieved nearly perfect performance in both tasks. Cochlear-implant subjects achieved good performance in vowel recognition but poor performance in speaker recognition. The level of the cochlear implant performance was functionally equivalent to normal performance with eight spectral bands for vowel recognition but only to one band for speaker recognition. These results show a disassociation between speech and speaker recognition with primarily temporal cues, highlighting the limitation of current speech processing strategies in cochlear implants. Several methods, including explicit encoding of fundamental frequency and frequency modulation, are proposed to improve speaker recognition for current cochlear implant users.

  11. 1988 Wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Simpson, J.C.; Olsen, A.R.; Bittner, E.A.

    1992-03-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1988 and spatial patterns for 1988. It is the third in a series of reports that investigate the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. Mosaic maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1988 annual, winter, and summer periods. Temporal pattern analyses use a subset of 35 sites over a 10-year (1979--1988) period and an expanded subset of 137 sites, with greater spatial coverage, over a 7-year (1982--1988) period. The 10-year period represents the longest period with wet deposition monitoring data available that has a sufficient number of sites with data of known quality to allow a descriptive summary of annual temporal patterns. Sen`s median trend estimate and Kendall`s seasonal tau (KST) test are calculated for each ion species concentration and deposition at each site in both subsets.

  12. 1988 Wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Simpson, J.C.; Olsen, A.R.; Bittner, E.A.

    1992-03-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1988 and spatial patterns for 1988. It is the third in a series of reports that investigate the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. Mosaic maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1988 annual, winter, and summer periods. Temporal pattern analyses use a subset of 35 sites over a 10-year (1979--1988) period and an expanded subset of 137 sites, with greater spatial coverage, over a 7-year (1982--1988) period. The 10-year period represents the longest period with wet deposition monitoring data available that has a sufficient number of sites with data of known quality to allow a descriptive summary of annual temporal patterns. Sen's median trend estimate and Kendall's seasonal tau (KST) test are calculated for each ion species concentration and deposition at each site in both subsets.

  13. Data compression for speckle correlation interferometry temporal fringe pattern analysis

    SciTech Connect

    Tuck Wah Ng; Kar Tien Ang

    2005-05-01

    Temporal fringe pattern analysis is gaining prominence in speckle correlation interferometry, in particular for transient phenomena studies. This form of analysis, nevertheless, necessitates large data storage. Current compression schemes do not facilitate efficient data retrieval and may even result in important data loss. We describe a novel compression scheme that does not result in crucial data loss and allows for the efficient retrieval of data for temporal fringe analysis. In sample tests with digital speckle interferometry on fringe patterns of a plate and of a cantilever beam subjected to temporal phase and load evolution, respectively, we achieved a compression ratio of 1.6 without filtering out any data from discontinuous and low fringe modulation spatial points. By eliminating 38% of the data from discontinuous and low fringe modulation spatial points, we attained a significant compression ratio of 2.4.

  14. Of Speech and Time: Temporal Speech Patterns in Interpersonal Contexts.

    ERIC Educational Resources Information Center

    Sieqman, Aron W., Ed.; Feldstein, Stanley, Ed.

    The temporal patterning of speech, primarily within the context of interpersonal exchanges, is traced in this cross-section of research exploring the major directions such studies have taken. Eighteen authors contributed selections to support the thesis that time as a dimension of speech reflects many of the important processes that occur during…

  15. Compensation for acoustic heterogeneities in photoacoustic computed tomography using a variable temporal data truncation reconstruction method

    NASA Astrophysics Data System (ADS)

    Poudel, Joemini; Matthews, Thomas P.; Anastasio, Mark A.; Wang, Lihong V.

    2016-03-01

    Photoacoustic computed tomography (PACT) is an emerging computed imaging modality that exploits optical contrast and ultrasonic detection principles to form images of the absorbed optical energy density within tissue. If the object possesses spatially variant acoustic properties that are unaccounted for by the reconstruction algorithm, the estimated image can contain distortions. While reconstruction algorithms have recently been developed for compensating for this effect, they generally require the objects acoustic properties to be known a priori. To circumvent the need for detailed information regarding an objects acoustic properties, we have previously proposed a half-time reconstruction method for PACT. A half-time reconstruction method estimates the PACT image from a data set that has been temporally truncated to exclude the data components that have been strongly aberrated. In this approach, the degree of temporal truncation is the same for all measurements. However, this strategy can be improved upon it when the approximate sizes and locations of strongly heterogeneous structures such as gas voids or bones are known. In this work, we investigate PACT reconstruction algorithms that are based on a variable temporal data truncation (VTDT) approach that represents a generalization of the half-time reconstruction approach. In the VTDT approach, the degree of temporal truncation for each measurement is determined by the distance between the corresponding transducer location and the nearest known bone or gas void location. Reconstructed images from a numerical phantom is employed to demonstrate the feasibility and effectiveness of the approach.

  16. Storage of temporal pattern sequence in a network.

    PubMed

    Willwacher, G

    1982-01-01

    Learning of single patterns and a temporal pattern sequence in a network when the coupling coefficients between the network elements change their values according to a definite coupling function is described. In contrast to technical systems (e.g. film, tape) where temporal sequences are often encoded in the storage location, the network stores information only by changing the values of the coupling coefficients. A network of 100 elements was stimulated on an UNIVAC 1100/80 computer. Eight single patterns and a sequence of these patterns were offered at the input of the network. After the learning process the network reproduces every stored pattern as an output signal when only parts of it are fed in. The activity, that is the sum of all output signals, is regulated by an external control signal. By setting that control signal to a suitable value the network is able to reproduce the stored pattern sequence starting from any arbitrary pattern. Lowering the external control signal during that process causes the network to hold the last presented pattern until the external control signal is changed again. It is speculated that the coupling function implemented in the stimulation may be analogous to a characteristic describing the chemical process of cooperative binding. PMID:7059627

  17. Acoustic signalling for mate attraction in crickets: Abdominal ganglia control the timing of the calling song pattern.

    PubMed

    Jacob, Pedro F; Hedwig, Berthold

    2016-08-01

    Decoding the neural basis of behaviour requires analysing how the nervous system is organised and how the temporal structure of motor patterns emerges from its activity. The stereotypical patterns of the calling song behaviour of male crickets, which consists of chirps and pulses, is an ideal model to study this question. We applied selective lesions to the abdominal nervous system of field crickets and performed long-term acoustic recordings of the songs. Specific lesions to connectives or ganglia abolish singing or reliably alter the temporal features of the chirps and pulses. Singing motor control appears to be organised in a modular and hierarchically fashion, where more posterior ganglia control the timing of the chirp pattern and structure and anterior ganglia the timing of the pulses. This modular organisation may provide the substrate for song variants underlying calling, courtship and rivalry behaviour and for the species-specific song patterns in extant crickets. PMID:27109338

  18. Temporal patterns of phytoplankton abundance in the North Atlantic

    NASA Technical Reports Server (NTRS)

    Campbell, Janet W.

    1989-01-01

    A time series of CZCS images is being developed to study phytoplankton distribution patterns in the North Atlantic. The goal of this study is to observe temporal variability in phytoplankton pigments and other organic particulates, and to infer from these patterns the potential flux of biogenic materials from the euphotic layer to the deep ocean. Early results of this project are presented in this paper. Specifically, the satellite data used were 13 monthly composited images of CZCS data for the North Atlantic from January 1979 to January 1980. Results are presented for seasonal patterns along the 20 deg W meridian.

  19. A SIMPLE HETERODYNE TEMPORAL SPECKLE-PATTERN INTERFEROMETER

    SciTech Connect

    Wong, W. O.; Gao, Z.; Lu, J.

    2010-05-28

    A common light path design of heterodyne speckle pattern interferometer based on temporal speckle pattern interferometry is proposed for non-contact, full-field and real-time continuous displacement measurement. Double frequency laser is produced by rotating a half wave plate. An experiment was carried out to measure the dynamic displacement of a cantilever plate for testing the proposed common path heterodyne speckle pattern interferometer. The accuracy of displacement measurement was checked by measuring the motion at the mid-point of the plate with a point displacement sensor.

  20. The patterning mechanism of carbon nanotubes using surface acoustic waves: the acoustic radiation effect or the dielectrophoretic effect.

    PubMed

    Ma, Zhichao; Guo, Jinhong; Liu, Yan Jun; Ai, Ye

    2015-09-01

    In this study, we present a simple technique capable of assembling and patterning suspended CNTs using a standing surface acoustic wave (SSAW) field. Individual CNTs could be assembled into larger CNT bundles and patterned in periodic positions on a substrate surface. The mechanism of the SSAW-based patterning technique has been investigated using both numerical simulation and experimental study. It has been found that the acoustic radiation effect due to the acoustic pressure field and the dielectrophoretic (DEP) effect induced by the electric field co-existing in the patterning process however play different roles depending on the properties of the suspended particles and the suspension medium. In the SSAW-based patterning of highly conductive CNTs with high aspect ratio geometry, the positive DEP effect dominates over the acoustic radiation effect. In contrast, the acoustic radiation effect dominates over the DEP effect when manipulating less conductive, spherical or low aspect ratio particles or biological cells. These results provide a meaningful insight into the mechanism of SSAW-based patterning, which is of great help to guide the effective use of this patterning technique for various applications. PMID:26239679

  1. 1986 wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Olsen, A.R.

    1989-07-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1986 and spatial patterns for 1986. The report provides statistical distribution summaries of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. The data in the report are from the Acid Depositing System (ADS) for the statistical reporting of North American deposition data. Isopleth maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1986 annual, winter, and summer periods. The temporal pattern analyses use a subset of 30 sites over an 8-year (1979-1986) period and an expanded subset of 137 sites with greater spatial coverage over a 5-year (1982-1986) period. The 8-year period represents the longest period with wet deposition monitoring data unavailable that has a sufficient number of sites with data of known quality to allow a descriptive summary of annual temporal patterns. 19 refs., 105 figs., 29 tabs.

  2. Acceleration of ultrasound thermal therapy by patterned acoustic droplet vaporization

    PubMed Central

    Kripfgans, Oliver D.; Zhang, Man; Fabiilli, Mario L.; Carson, Paul L.; Padilla, Frederic; Swanson, Scott D.; Mougenot, Charles; Brian Fowlkes, J.; Mougenot, Charles

    2014-01-01

    One application of acoustic droplet vaporization (ADV), a method of converting biocompatible microdroplets into microbubbles, is to enhance locally high intensity focused ultrasound (HIFU) therapy. Two objectives are pursued here: (1) the controlled creation of a bubble trench prior to HIFU using ADV and (2) use of the trench for increasing ablation volumes, lowering acoustic powers, and decreasing therapy duration. Thermally responsive phantoms were made with perfluorocarbon emulsion. Compound lesions were formed in a laboratory setting and a clinical magnetic resonance imaging (MRI)-guided HIFU system. Linear and spiral patterned compound lesions were generated in trenches. A larger fraction of the HIFU beam is contained to increase the generation of heat. Using the laboratory system, a 90 mm linear length spiral trench was formed in 30 s with mechanical beam steering. Comparatively, the clinical HIFU system formed a 19.9 mm linear length spiral trench in approximately 1 s with electronic beam steering. Lesions were imaged optically and with MRI. A uniform thermal ablation volume of 3.25 mL was achieved in 55.4 s (4-times faster than standard clinical HIFU and 14-times larger volume versus sum of individual lesions). Single lesions showed a 400% volume increase. PMID:24437794

  3. Intermodal transfer in temporal discrimination. [of visual and acoustic stimuli duration

    NASA Technical Reports Server (NTRS)

    Warm, J. S.; Stutz, R. M.; Vassolo, P. A.

    1975-01-01

    This study determined if training for accuracy in temporal discrimination would transfer across sensory modalities. A fractionation method was used in which subjects bisected the durations of acoustic and visual signals at three standard intervals (6, 12, and 18 sec). Absolute error was the performance index. Half of the subjects were trained with acoustic stimuli and then tested in vision; the remainder were trained in vision and tested in audition. Similar negatively accelerated acquisition functions were noted for both modalities. Positive intermodal transfer, characterized by symmetry across modalities, was obtained at all standard durations. The results were considered to provide support for the notion that a common mechanism underlies temporal discriminations in different sensory systems.

  4. Acoustically induced strong interaction between two periodically patterned elastic plates

    NASA Astrophysics Data System (ADS)

    Qiu, Chunyin; Xu, Shengjun; Ke, Manzhu; Liu, Zhengyou

    2014-09-01

    We study the acoustic-induced interactions between a pair of identical elastic plates patterned with periodical structures. Remarkable mutual forces, both repulsions and attractions, have been observed in the subwavelength regime. The dramatic effect stems from the resonant enhancement of the local field sandwiched between the double plates. The parameter sensitivity of the magnitude and the sign of the interaction (i.e., repulsion or attraction) depend directly on the vibration morphology of the resonant mode. In practical applications, the sign of the interaction can be switched by controlling the external frequency. Both the adjustable magnitude and the switchable sign of the contactless interaction endow this simple and compact double-plate structure with great potential in ultrasonic applications.

  5. Cannabinoid Receptor Activation Shifts Temporally Engendered Patterns of Dopamine Release

    PubMed Central

    Oleson, Erik B; Cachope, Roger; Fitoussi, Aurelie; Tsutsui, Kimberly; Wu, Sharon; Gallegos, Jacqueline A; Cheer, Joseph F

    2014-01-01

    The ability to discern temporally pertinent environmental events is essential for the generation of adaptive behavior in conventional tasks, and our overall survival. Cannabinoids are thought to disrupt temporally controlled behaviors by interfering with dedicated brain timing networks. Cannabinoids also increase dopamine release within the mesolimbic system, a neural pathway generally implicated in timing behavior. Timing can be assessed using fixed-interval (FI) schedules, which reinforce behavior on the basis of time. To date, it remains unknown how cannabinoids modulate dopamine release when responding under FI conditions, and for that matter, how subsecond dopamine release is related to time in these tasks. In the present study, we hypothesized that cannabinoids would accelerate timing behavior in an FI task while concurrently augmenting a temporally relevant pattern of dopamine release. To assess this possibility, we measured subsecond dopamine concentrations in the nucleus accumbens while mice responded for food under the influence of the cannabinoid agonist WIN 55 212-2 in an FI task. Our data reveal that accumbal dopamine concentrations decrease proportionally to interval duration—suggesting that dopamine encodes time in FI tasks. We further demonstrate that WIN 55 212-2 dose-dependently increases dopamine release and accelerates a temporal behavioral response pattern in a CB1 receptor-dependent manner—suggesting that cannabinoid receptor activation modifies timing behavior, in part, by augmenting time-engendered patterns of dopamine release. Additional investigation uncovered a specific role for endogenous cannabinoid tone in timing behavior, as elevations in 2-arachidonoylglycerol, but not anandamide, significantly accelerated the temporal response pattern in a manner akin to WIN 55 212-2. PMID:24345819

  6. Temporal coherence of the acoustic field forward propagated through a continental shelf with random internal waves.

    PubMed

    Gong, Zheng; Chen, Tianrun; Ratilal, Purnima; Makris, Nicholas C

    2013-11-01

    An analytical model derived from normal mode theory for the accumulated effects of range-dependent multiple forward scattering is applied to estimate the temporal coherence of the acoustic field forward propagated through a continental-shelf waveguide containing random three-dimensional internal waves. The modeled coherence time scale of narrow band low-frequency acoustic field fluctuations after propagating through a continental-shelf waveguide is shown to decay with a power-law of range to the -1/2 beyond roughly 1 km, decrease with increasing internal wave energy, to be consistent with measured acoustic coherence time scales. The model should provide a useful prediction of the acoustic coherence time scale as a function of internal wave energy in continental-shelf environments. The acoustic coherence time scale is an important parameter in remote sensing applications because it determines (i) the time window within which standard coherent processing such as matched filtering may be conducted, and (ii) the number of statistically independent fluctuations in a given measurement period that determines the variance reduction possible by stationary averaging. PMID:24180758

  7. Impaired extraction of speech rhythm from temporal modulation patterns in speech in developmental dyslexia

    PubMed Central

    Leong, Victoria; Goswami, Usha

    2014-01-01

    Dyslexia is associated with impaired neural representation of the sound structure of words (phonology). The “phonological deficit” in dyslexia may arise in part from impaired speech rhythm perception, thought to depend on neural oscillatory phase-locking to slow amplitude modulation (AM) patterns in the speech envelope. Speech contains AM patterns at multiple temporal rates, and these different AM rates are associated with phonological units of different grain sizes, e.g., related to stress, syllables or phonemes. Here, we assess the ability of adults with dyslexia to use speech AMs to identify rhythm patterns (RPs). We study 3 important temporal rates: “Stress” (~2 Hz), “Syllable” (~4 Hz) and “Sub-beat” (reduced syllables, ~14 Hz). 21 dyslexics and 21 controls listened to nursery rhyme sentences that had been tone-vocoded using either single AM rates from the speech envelope (Stress only, Syllable only, Sub-beat only) or pairs of AM rates (Stress + Syllable, Syllable + Sub-beat). They were asked to use the acoustic rhythm of the stimulus to identity the original nursery rhyme sentence. The data showed that dyslexics were significantly poorer at detecting rhythm compared to controls when they had to utilize multi-rate temporal information from pairs of AMs (Stress + Syllable or Syllable + Sub-beat). These data suggest that dyslexia is associated with a reduced ability to utilize AMs <20 Hz for rhythm recognition. This perceptual deficit in utilizing AM patterns in speech could be underpinned by less efficient neuronal phase alignment and cross-frequency neuronal oscillatory synchronization in dyslexia. Dyslexics' perceptual difficulties in capturing the full spectro-temporal complexity of speech over multiple timescales could contribute to the development of impaired phonological representations for words, the cognitive hallmark of dyslexia across languages. PMID:24605099

  8. 1987 wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Simpson, J.C.; Olsen, A.R.

    1990-03-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1987 and spatial patterns for 1987. The report investigates the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. Data are from the Acid Deposition System (ADS) for the statistical reporting of North American deposition data which includes the National Atmospheric Deposition Program/National Trends Network (NADP/NTN), the MAP3S precipitation chemistry network, the Utility Acid Precipitation Study Program (UAPSP), the Canadian Precipitation Monitoring Network (CAPMoN), and the daily and 4-weekly Acidic Precipitation in Ontario Study (APIOS-D and APIOS-C). Mosaic maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1987 annual, winter, and summer periods. The temporal pattern analyses use a subset of 39 sites over a 9-year (1979--1987) period and an expanded subset of 140 sites with greater spatial coverage over a 6-year (1982--1987) period. 68 refs., 15 figs., 15 tabs.

  9. Acoustic droplet–hydrogel composites for spatial and temporal control of growth factor delivery and scaffold stiffness

    PubMed Central

    Fabiilli, Mario L.; Wilson, Christopher G.; Padilla, Frédéric; Martín-Saavedra, Francisco M.; Fowlkes, J. Brian; Franceschi, Renny T.

    2013-01-01

    Wound healing is regulated by temporally and spatially restricted patterns of growth factor signaling, but there are few delivery vehicles capable of the “on-demand” release necessary for recapitulating these patterns. Recently we described a perfluorocarbon double emulsion that selectively releases a protein payload upon exposure to ultrasound through a process known as acoustic droplet vaporization (ADV). In this study, we describe a delivery system composed of fibrin hydrogels doped with growth factor-loaded double emulsion for applications in tissue regeneration. Release of immunoreactive basic fibroblast growth factor (bFGF) from the composites increased up to 5-fold following ADV and delayed release was achieved by delaying exposure to ultrasound. Releasates of ultrasound-treated materials significantly increased the proliferation of endothelial cells compared to sham controls, indicating that the released bFGF was bioactive. ADV also triggered changes in the ultrastructure and mechanical properties of the fibrin as bubble formation and consolidation of the fibrin in ultrasound-treated composites were accompanied by up to a 22-fold increase in shear stiffness. ADV did not reduce the viability of cells suspended in composite scaffolds. These results demonstrate that an acoustic droplet–hydrogel composite could have broad utility in promoting wound healing through on-demand control of growth factor release and/or scaffold architecture. PMID:23535233

  10. Odor identity influences tracking of temporally patterned plumes in Drosophila

    PubMed Central

    2011-01-01

    Background Turbulent fluid landscapes impose temporal patterning upon chemical signals, and the dynamical neuronal responses to patterned input vary across the olfactory receptor repertoire in flies, moths, and locusts. Sensory transformations exhibit low pass filtering that ultimately results in perceptual fusion of temporally transient sensory signals. For example, humans perceive a sufficiently fast flickering light as continuous, but the frequency threshold at which this fusion occurs varies with wavelength. Although the summed frequency sensitivity of the fly antenna has been examined to a considerable extent, it is unknown how intermittent odor signals are integrated to influence plume tracking behavior independent of wind cues, and whether temporal fusion for behavioral tracking might vary according to the odor encountered. Results Here we have adopted a virtual reality flight simulator to study the dynamics of plume tracking under different experimental conditions. Flies tethered in a magnetic field actively track continuous (non-intermittent) plumes of vinegar, banana, or ethyl butyrate with equal precision. However, pulsing these plumes at varying frequency reveals that the threshold rate, above which flies track the plume as if it were continuous, is unique for each odorant tested. Thus, the capability of a fly to navigate an intermittent plume depends on the particular odorant being tracked during flight. Finally, we measured antennal field potential responses to an intermittent plume, found that receptor dynamics track the temporal pattern of the odor stimulus and therefore do not limit the observed behavioral temporal fusion limits. Conclusions This study explores the flies' ability to track odor plumes that are temporally intermittent. We were surprised to find that the perceptual critical fusion limit, determined behaviorally, is strongly dependent on odor identity. Antennal field potential recordings indicate that peripheral processing of temporal

  11. Age-Related Neural Oscillation Patterns During the Processing of Temporally Manipulated Speech.

    PubMed

    Rufener, Katharina S; Oechslin, Mathias S; Wöstmann, Malte; Dellwo, Volker; Meyer, Martin

    2016-05-01

    This EEG-study aims to investigate age-related differences in the neural oscillation patterns during the processing of temporally modulated speech. Viewing from a lifespan perspective, we recorded the electroencephalogram (EEG) data of three age samples: young adults, middle-aged adults and older adults. Stimuli consisted of temporally degraded sentences in Swedish-a language unfamiliar to all participants. We found age-related differences in phonetic pattern matching when participants were presented with envelope-degraded sentences, whereas no such age-effect was observed in the processing of fine-structure-degraded sentences. Irrespective of age, during speech processing the EEG data revealed a relationship between envelope information and the theta band (4-8 Hz) activity. Additionally, an association between fine-structure information and the gamma band (30-48 Hz) activity was found. No interaction, however, was found between acoustic manipulation of stimuli and age. Importantly, our main finding was paralleled by an overall enhanced power in older adults in high frequencies (gamma: 30-48 Hz). This occurred irrespective of condition. For the most part, this result is in line with the Asymmetric Sampling in Time framework (Poeppel in Speech Commun 41:245-255, 2003), which assumes an isomorphic correspondence between frequency modulations in neurophysiological patterns and acoustic oscillations in spoken language. We conclude that speech-specific neural networks show strong stability over adulthood, despite initial processes of cortical degeneration indicated by enhanced gamma power. The results of our study therefore confirm the concept that sensory and cognitive processes undergo multidirectional trajectories within the context of healthy aging. PMID:26613726

  12. Temporal patterns in rates of community change during succession.

    PubMed

    Anderson, Kristina J

    2007-06-01

    While ecological dogma holds that rates of community change decrease over the course of succession, this idea has yet to be tested systematically across a wide variety of successional sequences. Here, I review and define several measures of community change rates for species presence-absence data and test for temporal patterns therein using data acquired from 16 studies comprising 62 successional sequences. Community types include plant secondary and primary succession as well as succession of arthropods on defaunated mangrove islands and carcasses. Rates of species gain generally decline through time, whereas rates of species loss display no systematic temporal trends. As a result, percent community turnover generally declines while species richness increases--both in a decelerating manner. Although communities with relatively minor abiotic and dispersal limitations (e.g., plant secondary successional communities) exhibit rapidly declining rates of change, limitations arising from harsh abiotic conditions or spatial isolation of the community appear to substantially alter temporal patterns in rates of successional change. PMID:17479464

  13. Spatio-temporal patterns in inclined layer convection

    NASA Astrophysics Data System (ADS)

    Subramanian, Priya; Brausch, Oliver; Daniels, Karen E.; Bodenschatz, Eberhard; Schneider, Tobias M.; Pesch, Werner

    2016-05-01

    This paper reports on a theoretical analysis of the rich variety of spatio-temporal patterns observed recently in inclined layer convection at medium Prandtl number when varying the inclination angle $\\gamma$ and the Rayleigh number $R$. The present numerical investigation of the inclined layer convection system is based on the standard Oberbeck-Boussinesq equations. The patterns are shown to originate from a complicated competition of buoyancy-driven and shear-flow driven pattern forming mechanisms. The former are expressed as \\rm{longitudinal} convection rolls with their axes oriented parallel to the incline, the latter as perpendicular \\rm{transverse} rolls. Along with conventional methods to study roll patterns and their stability, we employ direct numerical simulations in large spatial domains, comparable with the experimental ones. As a result, we determine the phase diagram of the characteristic complex 3D convection patterns above onset of convection in the $\\gamma-R$ plane, and find that it compares very well with the experiments. In particular we demonstrate that interactions of specific Fourier modes, characterized by a resonant interaction of their wavevectors in the layer plane, are key to understanding the pattern morphologies.

  14. Measurement resolution of noise directivity patterns from acoustic flight tests

    NASA Technical Reports Server (NTRS)

    Conner, David A.

    1989-01-01

    The measurement resolution of noise directivity patterns from acoustic flight tests was investigated. Directivity angle resolution is affected by the data reduction parameters, the aircraft velocity and flyover altitude, and by deviations of the aircraft from the desired flight path. Equations are developed which determine bounds for the lateral and longitudinal directivity angle resolution as a function of the nominal directivity angle. The equations are applied to a flight test data base and the effects of several flight conditions and data reduction parameters on the directivity angle resolution are presented. The maximum directivity angle resolution typically occurs when the aircraft is at or near the overhead position. In general, directivity angle resolution improves with decreasing velocity, increasing altitude, increasing sampling rate, decreasing block size, and decreasing block averages. Deviations from the desired ideal flight path will increase the resolution. For the flight experiment considered in this study, an average of two flyovers were required at each test condition to obtain an acceptable flight path. The ability of the pilot to maintain the flight track improved with decreasing altitude, decreasing velocity, and practice. Due to the prevailing wind conditions, yaw angles of as much as 20 deg were required to maintain the desired flight path.

  15. Inverse hydrological modelling of spatio-temporal rainfall patterns

    NASA Astrophysics Data System (ADS)

    Grundmann, Jens; Hörning, Sebastian; Bárdossy, András

    2016-04-01

    Distributed hydrological models are commonly used for simulating the non-linear response of a watershed to rainfall events for addressing different hydrological properties of the landscape. Such models are driven by spatial rainfall patterns for consecutive time steps, which are normally generated from point measurements using spatial interpolation methods. However, such methods fail in reproducing the true spatio-temporal rainfall patterns especially in data scarce regions with poorly gauged catchments or for highly dynamic, small scaled rainstorms which are not well recorded by existing monitoring networks. Consequently, uncertainties are associated with poorly identified spatio-temporal rainfall distribution in distributed rainfall-runoff-modelling since the amount of rainfall received by a catchment as well as the dynamics of the runoff generation of flood waves are underestimated. For addressing these challenges a novel methodology for inverse hydrological modelling is proposed using a Markov-Chain-Monte-Carlo framework. Thereby, potential candidates of spatio-temporal rainfall patterns are generated and selected according their ability to reproduce the observed surface runoff at the catchment outlet for a given transfer function in a best way. The Methodology combines the concept of random mixing of random spatial fields with a grid-based spatial distributed rainfall runoff model. The conditional target rainfall field is obtained as a linear combination of unconditional spatial random fields. The corresponding weights of the linear combination are selected such that the spatial variability of the rainfall amounts as well as the actual observed rainfall values are reproduced. The functionality of the methodology is demonstrated on a synthetic example. Thereby, the known spatio-temporal distribution of rainfall is reproduced for a given number of point observations of rainfall and the integral catchment response at the catchment outlet for a synthetic catchment

  16. Bacterial colonization of Hydra hatchlings follows a robust temporal pattern

    PubMed Central

    Franzenburg, Sören; Fraune, Sebastian; Altrock, Philipp M; Künzel, Sven; Baines, John F; Traulsen, Arne; Bosch, Thomas CG

    2013-01-01

    Animals are colonized by complex bacterial communities. The processes controlling community membership and influencing the establishment of the microbial ecosystem during development are poorly understood. Here we aimed to explore the assembly of bacterial communities in Hydra with the broader goal of elucidating the general rules that determine the temporal progression of bacterial colonization of animal epithelia. We profiled the microbial communities in polyps at various time points after hatching in four replicates. The composition and temporal patterns of the bacterial communities were strikingly similar in all replicates. Distinct features included high diversity of community profiles in the first week, a remarkable but transient adult-like profile 2 weeks after hatching, followed by progressive emergence of a stable adult-like pattern characterized by low species diversity and the preponderance of the Betaproteobacterium Curvibacter. Intriguingly, this process displayed important parallels to the assembly of human fecal communities after birth. In addition, a mathematical modeling approach was used to uncover the organizational principles of this colonization process, suggesting that both, local environmental or host-derived factor(s) modulating the colonization rate, as well as frequency-dependent interactions of individual bacterial community members are important aspects in the emergence of a stable bacterial community at the end of development. PMID:23344242

  17. Bacterial colonization of Hydra hatchlings follows a robust temporal pattern.

    PubMed

    Franzenburg, Sören; Fraune, Sebastian; Altrock, Philipp M; Künzel, Sven; Baines, John F; Traulsen, Arne; Bosch, Thomas C G

    2013-04-01

    Animals are colonized by complex bacterial communities. The processes controlling community membership and influencing the establishment of the microbial ecosystem during development are poorly understood. Here we aimed to explore the assembly of bacterial communities in Hydra with the broader goal of elucidating the general rules that determine the temporal progression of bacterial colonization of animal epithelia. We profiled the microbial communities in polyps at various time points after hatching in four replicates. The composition and temporal patterns of the bacterial communities were strikingly similar in all replicates. Distinct features included high diversity of community profiles in the first week, a remarkable but transient adult-like profile 2 weeks after hatching, followed by progressive emergence of a stable adult-like pattern characterized by low species diversity and the preponderance of the Betaproteobacterium Curvibacter. Intriguingly, this process displayed important parallels to the assembly of human fecal communities after birth. In addition, a mathematical modeling approach was used to uncover the organizational principles of this colonization process, suggesting that both, local environmental or host-derived factor(s) modulating the colonization rate, as well as frequency-dependent interactions of individual bacterial community members are important aspects in the emergence of a stable bacterial community at the end of development. PMID:23344242

  18. Temporal sensitivity of human luminance pattern mechanisms determined by masking with temporally modulated stimuli.

    PubMed

    Boynton, G M; Foley, J M

    1999-05-01

    Target contrast thresholds were measured using vertical spatial Gabor targets in the presence of full field maskers of the same spatial frequency and orientation. In the first experiment both target and masker were 2 cpd. The target was modulated at a frequency of 1 or 10 Hz and the maskers varied in temporal frequency from 1 to 30 Hz and in contrast from 0.03 to 0.50. In the second experiment both target and masker had a spatial frequency of 1, 5 or 8 cpd. The target was modulated at 7.5 Hz and the same set of maskers was used as in the first experiment. The results are not consistent with a widely used model that is based on mechanisms in which excitation is summed linearly and the sum is transformed by an S-shaped nonlinear excitation-response function. A new model of human pattern vision mechanisms, which has excitatory and divisive inhibitory inputs, describes the results well. Parameters from the best fit of the new model to the results of the first experiment show that the 1 Hz and 10 Hz targets were detected by mechanisms with temporal low-pass and band-pass excitatory sensitivity, respectively. Fits to the second experiment suggest that at 1 cpd, the excitatory tuning of the detecting mechanism is band-pass. At 5 and 8 cpd, the mechanisms are excited by a broad range of temporal frequencies. Mechanism sensitivity to divisive inhibition depends on temporal frequency in the same general way as sensitivity to excitation. Mechanisms are more broadly tuned to divisive inhibition than to excitation, except when the target temporal frequency is high. PMID:10343857

  19. Pattern-level temporal difference learning, data fusion, and chess

    NASA Astrophysics Data System (ADS)

    Levinson, Robert; Weber, Ryan J.

    2000-04-01

    Our research group is using chess as a vehicle for studying the fusion of adaptation, multiple representation, and search technologies for real-time decision making. Chess systems like Deep Blue have achieved Grandmaster chess play with a brute-force search of the game tree and human- supplied information, like piece-values and opening books. However, subtle aspects of chess, including positional features and advanced concepts, are not capable of being represented or processed efficiently with the standard method. Since 1989, Morph I-III have exhibited more autonomy and learning ability than traditional chess programs in `adaptive pattern-oriented chess'. Like its predecessors, Morph IV is a reinforcement learner, but it also uses a new technique we call pattern-level TD and Q-learning to mathematically map the state space and effectively learn to classify situations. Its three knowledge sources include two traditional ones: material and a piece-square table, and a new method called Distance. These are combined using a simple genetic algorithm and a decision tree. This paper shows the effectiveness of fusing knowledge to replace search in real-time situations, since an agent which combines all sources is capable of consistently beating an agent which employs any of the individual knowledge sources. Surprisingly, the pattern-level TD agent is slightly superior to the pattern-level Q-learning agent, despite the fact that the Q-learning agent updates more Q-values on each temporal step.

  20. Temporally-Patterned Magnetic Fields Induce Complete Fragmentation in Planaria

    PubMed Central

    Murugan, Nirosha J.; Karbowski, Lukasz M.; Lafrenie, Robert M.; Persinger, Michael A.

    2013-01-01

    A tandem sequence composed of weak temporally-patterned magnetic fields was discovered that produced 100% dissolution of planarian in their home environment. After five consecutive days of 6.5 hr exposure to a frequency-modulated magnetic field (0.1 to 2 µT), immediately followed by an additional 6.5 hr exposure on the fifth day, to another complex field (0.5 to 5 µT) with exponentially increasing spectral power 100% of planarian dissolved within 24 hr. Reversal of the sequence of the fields or presentation of only one pattern for the same duration did not produce this effect. Direct video evidence showed expansion (by visual estimation ∼twice normal volume) of the planarian following the first field pattern followed by size reduction (estimated ∼1/2 of normal volume) and death upon activation of the second pattern. The contortions displayed by the planarian during the last field exposure suggest effects on contractile proteins and alterations in the cell membrane’s permeability to water. PMID:23620783

  1. Mode-shape measurement of piezoelectric plate using temporal speckle pattern interferometry and temporal standard deviation.

    PubMed

    Chang, Ching-Yuan; Ma, Chien-Ching

    2011-11-01

    This study proposes an image processing method to improve the quality of interference fringes in mode-shape measurement using temporal speckle pattern interferometry. A vibrating piezoelectric plate at resonance was investigated, and the full-field optical information was saved as a sequence of images. According to derived statistical properties, an algorithm was developed to remove noise from both the background and disturbance, resulting in high-resolution images of excellent quality. In addition, the resonant frequency and mode shape obtained using the proposed algorithm demonstrate excellent agreement with theoretical results obtained by the finite element method. PMID:22048391

  2. Temporal and acoustic characteristics of Greek vowels produced by adults with cerebral palsy

    NASA Astrophysics Data System (ADS)

    Botinis, Antonis; Orfanidou, Ioanna; Fourakis, Marios; Fourakis, Marios

    2005-09-01

    The present investigation examined the temporal and spectral characteristics of Greek vowels as produced by speakers with intact (NO) versus cerebral palsy affected (CP) neuromuscular systems. Six NO and six CP native speakers of Greek produced the Greek vowels [i, e, a, o, u] in the first syllable of CVCV nonsense words in a short carrier phrase. Stress could be on either the first or second syllable. There were three female and three male speakers in each group. In terms of temporal characteristics, the results showed that: vowels produced by CP speakers were longer than vowels produced by NO speakers; stressed vowels were longer than unstressed vowels; vowels produced by female speakers were longer than vowels produced by male speakers. In terms of spectral characteristics the results showed that the vowel space of the CP speakers was smaller than that of the NO speakers. This is similar to the results recently reported by Liu et al. [J. Acoust. Soc. Am. 117, 3879-3889 (2005)] for CP speakers of Mandarin. There was also a reduction of the acoustic vowel space defined by unstressed vowels, but this reduction was much more pronounced in the vowel productions of CP speakers than NO speakers.

  3. Temporal patterns in adult salmon migration timing across southeast Alaska

    USGS Publications Warehouse

    Kovach, Ryan P.; Ellison, Stephen; Pyare, Sanjay; Tallmon, David

    2015-01-01

    Pacific salmon migration timing can drive population productivity, ecosystem dynamics, and human harvest. Nevertheless, little is known about long-term variation in salmon migration timing for multiple species across broad regions. We used long-term data for five Pacific salmon species throughout rapidly warming southeast Alaska to describe long-term changes in salmon migration timing, interannual phenological synchrony, relationships between climatic variation and migratory timing, and to test whether long-term changes in migration timing are related to glaciation in headwater streams. Temporal changes in the median date of salmon migration timing varied widely across species. Most sockeye populations are migrating later over time (11 of 14), but pink, chum, and especially coho populations are migrating earlier than they did historically (16 of 19 combined). Temporal trends in duration and interannual variation in migration timing were highly variable across species and populations. The greatest temporal shifts in the median date of migration timing were correlated with decreases in the duration of migration timing, suggestive of a loss of phenotypic variation due to natural selection. Pairwise interannual correlations in migration timing varied widely but were generally positive, providing evidence for weak region-wide phenological synchrony. This synchrony is likely a function of climatic variation, as interannual variation in migration timing was related to climatic phenomenon operating at large- (Pacific decadal oscillation), moderate- (sea surface temperature), and local-scales (precipitation). Surprisingly, the presence or the absence of glaciers within a watershed was unrelated to long-term shifts in phenology. Overall, there was extensive heterogeneity in long-term patterns of migration timing throughout this climatically and geographically complex region, highlighting that future climatic change will likely have widely divergent impacts on salmon

  4. Temporal patterns in adult salmon migration timing across southeast Alaska.

    PubMed

    Kovach, Ryan P; Ellison, Stephen C; Pyare, Sanjay; Tallmon, David A

    2015-05-01

    Pacific salmon migration timing can drive population productivity, ecosystem dynamics, and human harvest. Nevertheless, little is known about long-term variation in salmon migration timing for multiple species across broad regions. We used long-term data for five Pacific salmon species throughout rapidly warming southeast Alaska to describe long-term changes in salmon migration timing, interannual phenological synchrony, relationships between climatic variation and migratory timing, and to test whether long-term changes in migration timing are related to glaciation in headwater streams. Temporal changes in the median date of salmon migration timing varied widely across species. Most sockeye populations are migrating later over time (11 of 14), but pink, chum, and especially coho populations are migrating earlier than they did historically (16 of 19 combined). Temporal trends in duration and interannual variation in migration timing were highly variable across species and populations. The greatest temporal shifts in the median date of migration timing were correlated with decreases in the duration of migration timing, suggestive of a loss of phenotypic variation due to natural selection. Pairwise interannual correlations in migration timing varied widely but were generally positive, providing evidence for weak region-wide phenological synchrony. This synchrony is likely a function of climatic variation, as interannual variation in migration timing was related to climatic phenomenon operating at large- (Pacific decadal oscillation), moderate- (sea surface temperature), and local-scales (precipitation). Surprisingly, the presence or the absence of glaciers within a watershed was unrelated to long-term shifts in phenology. Overall, there was extensive heterogeneity in long-term patterns of migration timing throughout this climatically and geographically complex region, highlighting that future climatic change will likely have widely divergent impacts on salmon

  5. Temporal and durational patterns associating respiration and swallowing.

    PubMed

    Klahn, M S; Perlman, A L

    1999-01-01

    This study obtained initial normative data on the temporal coordination of respiration and swallowing events in 12 young adults using a first-generation Respirodeglutometer. In addition, direction of airflow before and after deglutive apnea was obtained. Three swallows of two viscosities of bolus material were performed by each subject, yielding a total of 72 swallows. Qualitative and quanitative analyses were performed. Time of onset of submental surface electromyography and time of laryngeal movement were found to differ between males and females. Males began submental muscle contraction before females and laryngeal movement after females. Duration of deglutition apnea for all swallows was 0.75 +/- 0.14 sec. Expiration occurred before the deglutition apnea 93% of the time and after the deglutition apnea 100% of the time. A modal pattern of events obtained with the Respirodeglutometer was present in 42% of the swallows, and an additional 47% had only one event differ from that order. PMID:10341108

  6. Temporal patterns of solar eclipses on areostationary relay satellites

    NASA Astrophysics Data System (ADS)

    Romero, P.; Antolín, R.

    2014-09-01

    Mars Areostationary Relay Satellites are considered robust candidates to meet the telecommunications needs of the coming set of Mars science missions. Orbital station-keeping manoeuvres are required to compensate natural perturbations on the areostationary orbit. This paper deals on the pattern description of solar eclipses in the areostationary orbit to allow to test the constrain imposed by the impossibility to perform manoeuvres at the eclipse times. We present here the models used to characterize the two eclipse epochs around the spring and autumn equinoxes over a Martian year. In average, each eclipse season lasts 90 sols in eclipse with a daily maxima duration of about 1 h 18 min plus 2 min 54 s of penumbra. Temporal duration of solar eclipses with different values near to zero inclination and different satellite orbit nodes has been also analyzed.

  7. Temporal Patterns of Fire in West Kalimantan, Indonesia

    NASA Astrophysics Data System (ADS)

    Murphy, K. J.

    2004-12-01

    Fire is an essential landscape management tool extensively employed in West Kalimantan Indonesia to clear land and prepare agricultural areas. Under typically wet climatic conditions fires are easily controlled and seldom spread into adjacent land cover. However, during droughts induced by strong El Nino events, land management fires threaten vast areas of the landscape threatening endangered species habitat and releasing large amounts of carbon into the atmosphere. This study investigates temporal and spatial variations of fires detected by Moderate-resolution Imaging Spectroradiometer (MODIS) and Along Track Scanning Radiometer between 2000 and 2004 against the MODIS Vegetation Continuous Fields and cultural features manually digitized from Landsat ETM+ scenes. Patterns of fire during phases of the El Niño-La Niña cycle are described and the impacts of fires on orangutan habitat are investigated.

  8. Spatio-Temporal Pattern of Saturn's Equatorial Oscillation

    NASA Technical Reports Server (NTRS)

    Flasar, F. M.; Schnider, P. J.; Marouf, E. A.; McGhee, C. A.; Kliore, A. J.; Rappaport, N. J.

    2010-01-01

    Recent ground-based and Cassini CIRS thermal-infrared data have characterized the spatial and temporal characteristics of an equatorial oscillation in the middle atmosphere of Saturn above the 100-mbar level. The CIRS data [I] indicated a pattern of warm and cold anomalies near the equator, stacked vertically in alternating fashion. The ground-based observations s2, although not having the altitude range or vertical resolution of the CIRS observations, covered several years and indicated an oscillation cycle of approx.15 years, roughly half of Saturn's year. In Earth's middle atmosphere, both the quasi-biennial (approx.26 months) and semi-annual equatorial oscillations have been extensively observed and studied (see e.g., [3]), These exhibit a pattern of alternating warmer and cooler zonal-mean temperatures with altitude, relative to those at subtropical latitudes. Consistent with the thermal wind equation, this is also associated with an alternating pattern of westerly and easterly zonal winds. Moreover, the pattern of winds and temperatures descends with time. Momentum deposition by damped vertically propagating waves is thought to play a key role m forcing both types of oscillation, and it can plausibly account for the descent. Here we report the direct observation of this descent in Saturn's equatorial atmosphere from Cassini radio occultation soundings in 2005 and 2009. The retrieved temperatures are consistent with a descent of 0.7 x the pressure scale height. The descent rate is related to the magnitude of the wave forcing, radiative damping, and induced meridional circulations. We discuss possible implications.

  9. Investigating temporal asymmetry using masking period patterns and models of peripheral auditory processing.

    PubMed

    Lentz, Jennifer J; Shen, Yi

    2011-05-01

    Two experiments were conducted in conjunction with modeling to evaluate the role of peripheral nonlinearity and neural adaptation in the perception of temporally asymmetric sounds. In both experiments, maskers were broadband noises amplitude modulated with ramped and damped exponential modulators that repeated at 40 Hz. Masking period patterns (MPPs) were constructed by measuring detection threshold of a 5-ms, 1000-Hz tone burst as function of the signal's onset delay. Experiment I showed that varying modulator half-life from 1 to 16 ms led to differences in the damped and the ramped MPPs that were largest at the short half-lives and diminished at the longer half-lives. When masker level was varied (experiment II), the largest difference between ramped and damped MPPs occurred at moderate stimulus levels. Two peripheral auditory models were evaluated, one a simple auditory filter followed by a power-law nonlinearity and another, a model of auditory nerve processing [J. Acoust. Soc. Am. 126, 2390-2412 (2009)] that includes neural adaptation. Neither models predicted differences between the ramped and damped MPPs, providing indirect support that the central auditory system has a role in perceptual temporal asymmetry. PMID:21568421

  10. Spatial and temporal patterns of hydrological extremes in Europe

    NASA Astrophysics Data System (ADS)

    Hall, Julia; Perdigão, Rui A. P.

    2015-04-01

    At a catchment scale, the hydrological characteristics of extreme events such as floods and droughts vary considerably across Europe. However, extreme events are also governed by large-scale physical processes that can influence the hydrological response of larger regions beyond catchment or national boundaries. To analyse such extreme events at a regional scale, a hydrological database for Europe, consisting of daily data from over 5000 stations, has been assembled. The database is a result of existing datasets of European coverage amended and complemented by a collaborative effort as part of a joint European flood research agreement based on the exchange of data, models, staff and expertise. The developed database allows an analysis of the influence of large scale drivers such as climate on the spatial patterns of floods and droughts across Europe. The timing of extreme events in Europe is a key variable in understanding the main processes governing flood and drought events. In this contribution, regional similarities and differences of hydrological extremes in Europe are analysed and the resulting characteristic spatio-temporal patterns of floods and droughts are presented separately and compared with one another.

  11. Statistical methods for investigating quiescence and other temporal seismicity patterns

    USGS Publications Warehouse

    Matthews, M.V.; Reasenberg, P.A.

    1988-01-01

    We propose a statistical model and a technique for objective recognition of one of the most commonly cited seismicity patterns:microearthquake quiescence. We use a Poisson process model for seismicity and define a process with quiescence as one with a particular type of piece-wise constant intensity function. From this model, we derive a statistic for testing stationarity against a 'quiescence' alternative. The large-sample null distribution of this statistic is approximated from simulated distributions of appropriate functionals applied to Brownian bridge processes. We point out the restrictiveness of the particular model we propose and of the quiescence idea in general. The fact that there are many point processes which have neither constant nor quiescent rate functions underscores the need to test for and describe nonuniformity thoroughly. We advocate the use of the quiescence test in conjunction with various other tests for nonuniformity and with graphical methods such as density estimation. ideally these methods may promote accurate description of temporal seismicity distributions and useful characterizations of interesting patterns. ?? 1988 Birkha??user Verlag.

  12. Dependence of the Startle Response on Temporal and Spectral Characteristics of Acoustic Modulatory Influences in Rats and Gerbils

    PubMed Central

    Steube, Natalie; Nowotny, Manuela; Pilz, Peter K. D.; Gaese, Bernhard H.

    2016-01-01

    The acoustic startle response (ASR) and its modulation by non-startling prepulses, presented shortly before the startle-eliciting stimulus, is a broadly applied test paradigm to determine changes in neural processing related to auditory or psychiatric disorders. Modulation by a gap in background noise as a prepulse is especially used for tinnitus assessment. However, the timing and frequency-related aspects of prepulses are not fully understood. The present study aims to investigate temporal and spectral characteristics of acoustic stimuli that modulate the ASR in rats and gerbils. For noise-burst prepulses, inhibition was frequency-independent in gerbils in the test range between 4 and 18 kHz. Prepulse inhibition (PPI) by noise-bursts in rats was constant in a comparable range (8–22 kHz), but lower outside this range. Purely temporal aspects of prepulse–startle-interactions were investigated for gap-prepulses focusing mainly on gap duration. While very short gaps had no (rats) or slightly facilitatory (gerbils) influence on the ASR, longer gaps always had a strong inhibitory effect. Inhibition increased with durations up to 75 ms and remained at a high level of inhibition for durations up to 1000 ms for both, rats and gerbils. Determining spectral influences on gap-prepulse inhibition (gap-PPI) revealed that gerbils were unaffected in the limited frequency range tested (4–18 kHz). The more detailed analysis in rats revealed a variety of frequency-dependent effects. Gaps in pure-tone background elicited constant and high inhibition (around 75%) over a broad frequency range (4–32 kHz). For gaps in noise-bands, on the other hand, a clear frequency-dependency was found: inhibition was around 50% at lower frequencies (6–14 kHz) and around 70% at high frequencies (16–20 kHz). This pattern of frequency-dependency in rats was specifically resulting from the inhibitory effect by the gaps, as revealed by detailed analysis of the underlying startle amplitudes. An

  13. Dependence of the Startle Response on Temporal and Spectral Characteristics of Acoustic Modulatory Influences in Rats and Gerbils.

    PubMed

    Steube, Natalie; Nowotny, Manuela; Pilz, Peter K D; Gaese, Bernhard H

    2016-01-01

    The acoustic startle response (ASR) and its modulation by non-startling prepulses, presented shortly before the startle-eliciting stimulus, is a broadly applied test paradigm to determine changes in neural processing related to auditory or psychiatric disorders. Modulation by a gap in background noise as a prepulse is especially used for tinnitus assessment. However, the timing and frequency-related aspects of prepulses are not fully understood. The present study aims to investigate temporal and spectral characteristics of acoustic stimuli that modulate the ASR in rats and gerbils. For noise-burst prepulses, inhibition was frequency-independent in gerbils in the test range between 4 and 18 kHz. Prepulse inhibition (PPI) by noise-bursts in rats was constant in a comparable range (8-22 kHz), but lower outside this range. Purely temporal aspects of prepulse-startle-interactions were investigated for gap-prepulses focusing mainly on gap duration. While very short gaps had no (rats) or slightly facilitatory (gerbils) influence on the ASR, longer gaps always had a strong inhibitory effect. Inhibition increased with durations up to 75 ms and remained at a high level of inhibition for durations up to 1000 ms for both, rats and gerbils. Determining spectral influences on gap-prepulse inhibition (gap-PPI) revealed that gerbils were unaffected in the limited frequency range tested (4-18 kHz). The more detailed analysis in rats revealed a variety of frequency-dependent effects. Gaps in pure-tone background elicited constant and high inhibition (around 75%) over a broad frequency range (4-32 kHz). For gaps in noise-bands, on the other hand, a clear frequency-dependency was found: inhibition was around 50% at lower frequencies (6-14 kHz) and around 70% at high frequencies (16-20 kHz). This pattern of frequency-dependency in rats was specifically resulting from the inhibitory effect by the gaps, as revealed by detailed analysis of the underlying startle amplitudes. An interaction

  14. Spatio-Temporal Patterns of Surface Irradiance in the Himalaya

    NASA Astrophysics Data System (ADS)

    Dobreva, I. D.; Bishop, M. P.

    2014-12-01

    Climate-glacier dynamics in the Himalaya are complex. Research indicates extreme local variability in glacier fluctuations and the presence of regional trends. The glaciers in the Karakoram Himalaya depart from world trends of glacier recession, as many are advancing or surging. Nevertheless, glacier sensitivity to climate change has yet to be quantitatively assessed given numerous controlling factors. We attempt to address part of the problem by evaluating the role of topography in explaining variations in surface irradiance. Specifically, we developed a spectral-based topographic solar radiation model that accounts for multi-scale topographic effects. We evaluate surface irradiance simulations over a multitude of glaciers across the Karakoram and Nepalese Himalaya and examine spatio-temporal patterns to determine which alpine glaciers are more susceptible to radiation forcing. Simulation results reveal that many Nepalese glaciers characterized by rapid downwasting, retreat and expanding proglacial lakes, exhibit relatively high-magnitude daily irradiance patterns spatially focused over the terminus region, while other glacier surface areas received less short-wave irradiance. These results were found to be associated with basin-scale relief conditions and topographic shielding. Altitudinal variation in glacier surface irradiance was found to increase during the later portion of the ablation season, as changes in solar geometry produce more cast shadows that protect glaciers given extreme relief. Topographic effects on surface irradiance vary significantly from glacier to glacier, demonstrating the important role of glacier and mountain geodynamics on glacier sensitivity to climate change. Spatial and altitudinal patterns, coupled with information regarding supraglacial debris distribution, depth and ice-flow velocities, may potentially explain glacier sensitivity to climate change and the local variability of glacier fluctuations in the Himalaya.

  15. Detection of Acoustic Temporal Fine Structure by Cochlear Implant Listeners: Behavioral Results and Computational Modeling

    PubMed Central

    Imennov, Nikita S.; Won, Jong Ho; Drennan, Ward R.; Jameyson, Elyse; Rubinstein, Jay T.

    2013-01-01

    A test of within-channel detection of acoustic temporal fine structure (aTFS) cues is presented. Eight cochlear implant listeners (CI) were asked to discriminate between two Schroeder-phase (SP) complexes using a two-alternative, forced-choice task. Because differences between the acoustic stimuli are primarily constrained to their aTFS, successful discrimination reflects a combination of the subjects’ perception of and the strategy’s ability to deliver aTFS cues. Subjects were mapped with single-channel Continuous Interleaved Sampling (CIS) and Simultaneous Analog Stimulation (SAS) strategies. To compare within- and across- channel delivery of aTFS cues, a 16-channel clinical HiRes strategy was also fitted. Throughout testing, SAS consistently outperformed the CIS strategy (p ≤ 0.002). For SP stimuli with F0 =50 Hz, the highest discrimination scores were achieved with the HiRes encoding, followed by scores with the SAS and the CIS strategies, respectively. At 200 Hz, single-channel SAS performed better than HiRes (p = 0.022), demonstrating that under a more challenging testing condition, discrimination performance with a single-channel analog encoding can exceed that of a 16-channel pulsatile strategy. To better understand the intermediate steps of discrimination, a biophysical model was used to examine the neural discharges evoked by the SP stimuli. Discrimination estimates calculated from simulated neural responses successfully tracked the behavioral performance trends of single-channel CI listeners. PMID:23333260

  16. Acoustic effects analysis utilizing speckle pattern with fixed-particle Monte Carlo

    NASA Astrophysics Data System (ADS)

    Vakili, Ali; Hollmann, Joseph A.; Holt, R. Glynn; DiMarzio, Charles A.

    2016-03-01

    Optical imaging in a turbid medium is limited because of multiple scattering a photon undergoes while traveling through the medium. Therefore, optical imaging is unable to provide high resolution information deep in the medium. In the case of soft tissue, acoustic waves unlike light, can travel through the medium with negligible scattering. However, acoustic waves cannot provide medically relevant contrast as good as light. Hybrid solutions have been applied to use the benefits of both imaging methods. A focused acoustic wave generates a force inside an acoustically absorbing medium known as acoustic radiation force (ARF). ARF induces particle displacement within the medium. The amount of displacement is a function of mechanical properties of the medium and the applied force. To monitor the displacement induced by the ARF, speckle pattern analysis can be used. The speckle pattern is the result of interfering optical waves with different phases. As light travels through the medium, it undergoes several scattering events. Hence, it generates different scattering paths which depends on the location of the particles. Light waves that travel along these paths have different phases (different optical path lengths). ARF induces displacement to scatterers within the acoustic focal volume, and changes the optical path length. In addition, temperature rise due to conversion of absorbed acoustic energy to heat, changes the index of refraction and therefore, changes the optical path length of the scattering paths. The result is a change in the speckle pattern. Results suggest that the average change in the speckle pattern measures the displacement of particles and temperature rise within the acoustic wave focal area, hence can provide mechanical and thermal properties of the medium.

  17. The Spatial and Temporal Pattern of Heavy Precipitation in Seoul

    NASA Astrophysics Data System (ADS)

    Lee, K. S.; Yu, J.; Im, J.; Jin, R.

    2014-12-01

    1.Introduction Combined with summer heavy rainfall and urbanization today's urban area face higher frequency of heavy rainfall with higher intensity in summer than before. Heavy rainfall in short time makes it low elevation area to be susceptible to more flooding than before. According to KMA it is announced as heavy rainfall warning whose precipitation amount is equal to or greater than 150mm per 12 hours. And sometimes, these rainfall events bring out severe disasters such as the case of flooding in Gangnam Station, Daechi Station and landslides which resulted in 20 person death in downtown Seoul on July 27th, 2011. Thus, the purpose of this study is to investigate the spatial and temporal pattern of heavy precipitation in Seoul. Ultimately it aims to contribute these results to the proper urban planning and management. 2. Materials and Methods In this study, the digital topograhic data and weather data in Seoul Metropolitan Area were used to figure out the spatial distribution of summer heavy rainfall. The precipitation data in summer (June to Sep.) season were used to detect the recent changes of temporal and spatial features from 1995 to 2014 (20 years) using Automatic Weather tation (AWS) data in Seoul Metropolitan Area. The precipitation amount in summer during the past 20 years has been on the rise but rainy days have barely changed,which reveals the daily precipitation intensity has increased. After deriving the characteristic of heavy rainfall, the relationship among precipitation, topography and land uses were interpreted and discussed. This study is to investigate the characteristics of flood prone area by focusing topographic and land use characteristics. Ultimately it contributes to prepare the guideline for flood preventive urban plannig.

  18. Spatio-temporal correlation of vegetation and temperature patterns

    NASA Astrophysics Data System (ADS)

    Coppola, R.; D'Emilio, M.; Imbrenda, V.; Lanfredi, M.; Macchiato, M.; Simoniello, T.

    2010-05-01

    Temperature is one of the variables largely influencing vegetation species distributions (biogeographical regions) and plant development (phenological cycle). Anomalies in temperature regional patterns and in microclimate conditions induce modifications in vegetation cover phenology; in particular in European regions, the responsiveness of vegetation to temperature increase is greater in warmer Mediterranean countries. In order to assess the spatial arrangement and the temporal variability of vegetation and temperature patterns in a typical Mediterranean environment, we investigated monthly NDVI-AVHRR and temperature time series over Southern Italy, core of Mediterranean Basin. Temperature data, obtained from 35 meteoclimatic stations, were rasterized by adopting a combined deterministic-stochastic procedure we suitably implemented for the investigated region in order to obtain spatial data comparable with NDVI maps. For the period 1996-1998, monthly MVC data were clusterized on annual basis by means of a classification procedure to aggregate areas with similar phenological cycles. The same procedure was adopted to jointly evaluate temperature and vegetation profiles and identify areas having similar phenological and temperature patterns. The comparison of the identified clusters showed that the classification obtained with and without temperature profiles are very similar enhancing the strong role of this variable in vegetation development. Some exceptions in the cluster arrangement are due to local anomalies in vegetation distribution, such as forest fires. In order to spatially analyze such a dependence, we also elaborated a time correlation map for each year and we found that the correlation patterns are persistent on the year basis and generally follow the land cover distributions. The correlation values are very high and positive for the forested mountainous areas (R>0.8), whereas they are negative for plan coastal areas (R<-0.8). Low correlation values (R

  19. The BMP signaling gradient patterns dorsoventral tissues in a temporally progressive manner along the anteroposterior axis

    PubMed Central

    Tucker, Jennifer A.; Mintzer, Keith A.; Mullins, Mary C.

    2008-01-01

    Summary Patterning of the vertebrate anteroposterior (AP) axis proceeds temporally from anterior to posterior. How dorsoventral (DV) axial patterning relates to AP temporal patterning is unknown. We examined the temporal activity of BMP signaling in patterning ventrolateral cell fates along the AP axis, using transgenes that rapidly turn ‘off’ or ‘on’ BMP signaling. We show that BMP signaling patterns rostral DV cell fates at the onset of gastrulation, while progressively more caudal DV cell fates are patterned at progressively later intervals during gastrulation. Increased BMP signal duration is not required to pattern more caudal DV cell fates, rather distinct temporal intervals of signaling are required. This progressive action is regulated downstream of, or in parallel to BMP signal transduction at the level of Smad1/5 phosphorylation. We propose that a temporal cue regulates a cell's competence to respond to BMP signaling, allowing the acquisition of a cell's DV and AP identity simultaneously. PMID:18194657

  20. Unravelling spatio-temporal evapotranspiration patterns in topographically complex landscapes

    NASA Astrophysics Data System (ADS)

    Metzen, Daniel; Sheridan, Gary; Nyman, Petter; Lane, Patrick

    2016-04-01

    Vegetation co-evolves with soils and topography under a given long-term climatic forcing. Previous studies demonstrated a strong eco-hydrologic feedback between topography, vegetation and energy and water fluxes. Slope orientation (aspect and gradient) alter the magnitude of incoming solar radiation resulting in larger evaporative losses and less water availability on equator-facing slopes. Furthermore, non-local water inputs from upslope areas potentially contribute to available water at downslope positions. The combined effect of slope orientation and drainage position creates complex spatial patterns in biological productivity and pedogenesis, which in turn alter the local hydrology. In complex upland landscapes, topographic alteration of incoming radiation can cause substantial aridity index (ratio of potential evapotranspiration to precipitation) variations over small spatial extents. Most of the upland forests in south-east Australia are located in an aridity index (AI) range of 1-2, around the energy limited to water limited boundary, where forested systems are expected to be most sensitive to AI changes. In this research we aim to improve the fundamental understanding of spatio-temporal evolution of evapotranspiration (ET) patterns in complex terrain, accounting for local topographic effects on system properties (e.g. soil depth, sapwood area, leaf area) and variation in energy and water exchange processes due to slope orientation and drainage position. Six measurement plots were set-up in a mixed species eucalypt forest on a polar and equatorial-facing hillslope (AI ˜1.3 vs. 1.8) at varying drainage position (ridge, mid-slope, gully), while minimizing variations in other factors, e.g. geology and weather patterns. Sap flow, soil water content, incoming solar radiation and throughfall were continuously monitored at field sites spanning a wide range of soil depth (0.5 - >3m), maximum tree heights (17 - 51m) and LAI (1.2 - 4.6). Site-specific response curves

  1. The temporal pattern of vitellogenin synthesis in Drosophila grimshawi

    SciTech Connect

    Kambysellis, M.P.; Hatzopoulos, P.; Craddock, E.M. )

    1989-09-01

    The temporal pattern of protein production and, in particular, vitellogenin protein synthesis during the sexual maturation of Drosophila grimshawi females has been studied in vivo by briefly feeding the flies with 35S-methionine and 3H-amino acids. The overall level of incorporation was very low in young flies; it then progressively increased to reach a maximum with the onset of sexual maturity at 13-15 days. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analyses revealed three classes of proteins: those synthesized throughout the age spectrum, which constitute the majority of protein species; proteins synthesized primarily or only in young flies; and proteins synthesized only by the older flies. In this Drosophila species, the three vitellogenins (V1, V2, and V3) appeared to be synthesized in a two-phase pattern. In the first phase, small quantities of V1 and V2 were detected immunologically in the fat body and hemolymph of newly emerged and 1 day-old flies. These proteins did not accumulate in the hemolymph or the ovaries, apparently being unstable proteins. The second phase commenced in early vitellogenesis (7-9 days of age) with synthesis in the fat body of small quantities of V1 and V2, followed by V3 proteins. These proteins were secreted and accumulated in the hemolymph and 24 h later were found in the ovaries. Their quantities increased rapidly and a steady state of synthesis, release into the hemolymph, and uptake by the ovaries was reached by days 13-15. We have estimated that during the steady state of vitellogenin synthesis, a fly can synthesize in 24 h at least 152 micrograms of vitellogenins, which is more than 2% of its body weight, at an average rate of about 6.3 micrograms vitellogenins/h. About 2 micrograms of this are synthesized in the fat body, and about 4 micrograms in the ovaries.

  2. Temporal Patterns in Diversity Change on Earth Over Time

    NASA Astrophysics Data System (ADS)

    Bambach, Richard

    2007-05-01

    Multi-celled animals and plants did not originate until about 600 million years ago. Since then the diversity of life has expanded greatly, but this has not been a monotonic increase. Diversity, as taxonomic variety or richness, is produced by the interaction of origination and extinction. Origination and extinction are almost equally balanced; it has taken 600 million years to accumulate 10 to 30 million living species. With most species life spans in the range of one to fifteen million years most species that have ever originated are extinct and global diversity has “turned over” many times. Paleontologists recognize about 18 short-term events of elevated extinction intensity and diversity loss of sufficient magnitude to warrant the term “mass extinction.” Interestingly, in only one instance, the end-Cretaceous extinction, is there a consensus for the triggering event, but the kill mechanism or mechanisms that caused the widespread death of lineages is not established. We know less about the cause-effect relationships for other events. Recently a 62 million-year periodicity in the fluctuation of diversity has been documented, expressed primarily in the variation of diversity of marine genera that survived 45 million years or less. Analysis of the pattern of diversity change at the finest temporal scale possible suggests that the short-term mass extinctions are superimposed on this regular pattern of diversity fluctuations, rather than causal of them. However, most mass extinctions (14 of 18) occurred during the intervals of general diversity loss. It remains to be seen how origination and extinction interact to produce the periodic fluctuation in diversity.

  3. Spatial and temporal gene expression patterns occur during corm development.

    PubMed Central

    de Castro, L A; Carneiro, M; Neshich, D de C; de Paiva, G R

    1992-01-01

    We investigated gene expression patterns that occur during taro corm development. Two-dimensional gel electrophoresis identified several different prevalent proteins that accumulate during corm development. Microsequencing studies indicated that some of these proteins are related to taste-modifying proteins, such as curculin and miraculin, and proteins found in other storage organs, such as sporamin and the Kunitz trypsin inhibitor. A curculin-encoding cDNA clone, designated as TC1, was identified that corresponds to a highly prevalent 1-kb corm mRNA. The TC1 mRNA accumulates during corm development, is more prevalent in corm apical than basal regions, and is either absent, or present at low concentrations, in other vegetative organs such as the leaf and root. In situ hybridization experiments showed that the TC1 mRNA is highly concentrated in corm storage parenchyma cells and is absent, or present in reduced concentrations, in other corm cells and tissues. Our results show that corm development is associated with the differentiation of specialized cells and tissues, and that these differentiation events are coupled with the temporal and spatial expression of corm-specific genes. PMID:1467653

  4. Spatial and Temporal Patterns of Global Onshore Wind Speed Distribution

    SciTech Connect

    Zhou, Yuyu; Smith, Steven J.

    2013-09-09

    Wind power, a renewable energy source, can play an important role in electrical energy generation. Information regarding wind energy potential is important both for energy related modeling and for decision-making in the policy community. While wind speed datasets with high spatial and temporal resolution are often ultimately used for detailed planning, simpler assumptions are often used in analysis work. An accurate representation of the wind speed frequency distribution is needed in order to properly characterize wind energy potential. Using a power density method, this study estimated global variation in wind parameters as fitted to a Weibull density function using NCEP/CFSR reanalysis data. The estimated Weibull distribution performs well in fitting the time series wind speed data at the global level according to R2, root mean square error, and power density error. The spatial, decadal, and seasonal patterns of wind speed distribution were then evaluated. We also analyzed the potential error in wind power estimation when a commonly assumed Rayleigh distribution (Weibull k = 2) is used. We find that the assumption of the same Weibull parameter across large regions can result in substantial errors. While large-scale wind speed data is often presented in the form of average wind speeds, these results highlight the need to also provide information on the wind speed distribution.

  5. Spatio-temporal patterns of precipitation in Serbia

    NASA Astrophysics Data System (ADS)

    Gocic, Milan; Trajkovic, Slavisa

    2014-08-01

    The monthly precipitation data from 29 synoptic stations for the period 1946-2012 were analyzed using a number of different multivariate statistical analysis methods to investigate the spatial variability and temporal patterns of precipitation across Serbia. R-mode principal component analysis was used to study the spatial variability of the precipitation. Three distinct sub-regions were identified by applying the agglomerative hierarchical cluster analysis to the two component scores: C1 includes the north and the northeast part of Serbia, while C2 includes the western part of Central Serbia and southwestern part of Serbia and C3 includes central, east, south and southeast part of Serbia. The analysis of the identified sub-regions indicated that the monthly and seasonal precipitation in sub-region C2 had the values above average, while C1 and C3 had the precipitation values under average. The analysis of the linear trend of the mean annual precipitation showed an increasing trend for the stations located in Serbia and three sub-regions. From the result of this analysis, one can plan land use, water resources and agricultural production in the region.

  6. Spatial and temporal gene expression patterns occur during corm development.

    PubMed

    de Castro, L A; Carneiro, M; Neshich, D de C; de Paiva, G R

    1992-12-01

    We investigated gene expression patterns that occur during taro corm development. Two-dimensional gel electrophoresis identified several different prevalent proteins that accumulate during corm development. Microsequencing studies indicated that some of these proteins are related to taste-modifying proteins, such as curculin and miraculin, and proteins found in other storage organs, such as sporamin and the Kunitz trypsin inhibitor. A curculin-encoding cDNA clone, designated as TC1, was identified that corresponds to a highly prevalent 1-kb corm mRNA. The TC1 mRNA accumulates during corm development, is more prevalent in corm apical than basal regions, and is either absent, or present at low concentrations, in other vegetative organs such as the leaf and root. In situ hybridization experiments showed that the TC1 mRNA is highly concentrated in corm storage parenchyma cells and is absent, or present in reduced concentrations, in other corm cells and tissues. Our results show that corm development is associated with the differentiation of specialized cells and tissues, and that these differentiation events are coupled with the temporal and spatial expression of corm-specific genes. PMID:1467653

  7. The temporal patterns of disease severity and prevalence in schistosomiasis

    NASA Astrophysics Data System (ADS)

    Ciddio, Manuela; Mari, Lorenzo; Gatto, Marino; Rinaldo, Andrea; Casagrandi, Renato

    2015-03-01

    Schistosomiasis is one of the most widespread public health problems in the world. In this work, we introduce an eco-epidemiological model for its transmission and dynamics with the purpose of explaining both intra- and inter-annual fluctuations of disease severity and prevalence. The model takes the form of a system of nonlinear differential equations that incorporate biological complexity associated with schistosome's life cycle, including a prepatent period in snails (i.e., the time between initial infection and onset of infectiousness). Nonlinear analysis is used to explore the parametric conditions that produce different temporal patterns (stationary, endemic, periodic, and chaotic). For the time-invariant model, we identify a transcritical and a Hopf bifurcation in the space of the human and snail infection parameters. The first corresponds to the occurrence of an endemic equilibrium, while the latter marks the transition to interannual periodic oscillations. We then investigate a more realistic time-varying model in which fertility of the intermediate host population is assumed to seasonally vary. We show that seasonality can give rise to a cascade of period-doubling bifurcations leading to chaos for larger, though realistic, values of the amplitude of the seasonal variation of fertility.

  8. The temporal patterns of disease severity and prevalence in schistosomiasis

    SciTech Connect

    Ciddio, Manuela; Gatto, Marino Casagrandi, Renato

    2015-03-15

    Schistosomiasis is one of the most widespread public health problems in the world. In this work, we introduce an eco-epidemiological model for its transmission and dynamics with the purpose of explaining both intra- and inter-annual fluctuations of disease severity and prevalence. The model takes the form of a system of nonlinear differential equations that incorporate biological complexity associated with schistosome's life cycle, including a prepatent period in snails (i.e., the time between initial infection and onset of infectiousness). Nonlinear analysis is used to explore the parametric conditions that produce different temporal patterns (stationary, endemic, periodic, and chaotic). For the time-invariant model, we identify a transcritical and a Hopf bifurcation in the space of the human and snail infection parameters. The first corresponds to the occurrence of an endemic equilibrium, while the latter marks the transition to interannual periodic oscillations. We then investigate a more realistic time-varying model in which fertility of the intermediate host population is assumed to seasonally vary. We show that seasonality can give rise to a cascade of period-doubling bifurcations leading to chaos for larger, though realistic, values of the amplitude of the seasonal variation of fertility.

  9. Macroscale Circulation Patterns as Reflected in Spatial and Temporal Patterns of Precipitation over the Tibetan Plateau

    NASA Astrophysics Data System (ADS)

    Conselyea, K.; Yin, Z.

    2007-12-01

    Circulation patterns such as the NAO, PNA, and AO have been known to impact climate both near the action centers and at great distances away. These macroscale circulation patterns can impact regional wind patterns, temperature gradients and pressure gradients. Changes in these gradients can cause an onset of various weather conditions including precipitation. Precipitation across the Tibetan Plateau is influenced by known phenomena such as monsoon systems and teleconnections. Previous studies have suggested that other forcing mechanisms also may play a vital role in influencing precipitation in this region. To evaluate potential forcing factors affecting precipitation across the Tibetan Plateau, the relationship between the spatial and temporal patterns of precipitation and the regional and macroscale circulation patterns will be investigated. To explore this relationship statistical analysis, such as Principal Component Analysis (PCA), Correlation Field Analysis, and Canonical Correspondence Analysis (CCA), is preformed. This study also incorporates tree ring chronologies from Qilian junipers (Sabina przewalskii Kom.) sampled in the Qaidam Basin, northeastern Tibetan Plateau. These data have been used in previous studies to indicate environmental change, and tree rings taken from this region have shown signatures of circulation patterns such as Arctic Oscillation (AO). Based on the relationship between tree ring data and circulation patterns it is possible to reconstruct past events. This information along with examination of National Centers for Environmental Protection/National Center for Atmospheric Research (NCEP/NCAR) Reanalysis data will aid in the examination of the relationship between teleconnection patterns and precipitation, and develop a greater understanding of the precipitation variability across the Tibetan Plateau.

  10. Generation of a reference radiation pattern of string instruments using automatic excitation and acoustic centering.

    PubMed

    Shabtai, Noam R; Behler, Gottfried; Vorländer, Michael

    2015-11-01

    Radiation patterns of musical instruments are important for the understanding of music perception in concert halls, and may be used to improve the plausibility of virtual acoustic systems. Many attempts have been performed to measure the spatial response of musical instruments using surrounding spherical microphone arrays with a limited number of microphones. This work presents a high-resolution spatial sampling of the radiation pattern of an electrically excited violin, and addresses technical problems that arise due to mechanical reasons of the excitation apparatus using acoustic centering. PMID:26627818

  11. Acoustic chaos

    SciTech Connect

    Lauterborn, W.; Parlitz, U.; Holzfuss, J.; Billo, A.; Akhatov, I.

    1996-06-01

    Acoustic cavitation, a complex, spatio-temporal dynamical system, is investigated with respect to its chaotic properties. The sound output, the {open_quote}{open_quote}noise{close_quote}{close_quote}, is subjected to time series analysis. The spatial dynamics of the bubble filaments is captured by high speed holographic cinematography and subsequent digital picture processing from the holograms. Theoretical models are put forward for describing the pattern formation. {copyright} {ital 1996 American Institute of Physics.}

  12. Acoustics and sociolinguistics: Patterns of communication in hearing impairing classrooms

    NASA Astrophysics Data System (ADS)

    McKellin, William; Shahin, Kimary; Jamieson, Janet; Hodgson, Murray; Pichora-Fuller, Kathleen

    2005-04-01

    In elementary school classes, noise during student led activities is often taken as evidence of successful interaction and learning. In this complex social environment of elementary school classrooms, acquisition of complex language and social skills-the focus of activities in early education-is expected to take place in hearing-hostile environments. Communication and language processing in these contexts requires interactive strategies, discourse forms, and syntactic structures different from the educationally desired forms used in acoustically advantageous environments. Recordings were made of the interaction of groups of students in grades 1-3, 5, and 7 during collaborative group work in their regular classrooms. Each student wore microphones at the ear level and head-mounted video cameras. Each group as a whole was also audio- and videotaped and noise level readings were recorded. Analysis of the acoustical and phonological properties of language heard by each student has demonstrated that the language variety used in these noisy and reverberant settings is similar to that of individuals with hearing impairments. This paper reports similarities between the syntactic structures and pragmatic strategies used by hearing impaired children and normally hearing children in noisy contexts. [Work supported by Peter Wall Institute for Advanced Studies, University of British Columbia.

  13. Cell patterning with a heptagon acoustic tweezer--application in neurite guidance.

    PubMed

    Gesellchen, F; Bernassau, A L; Déjardin, T; Cumming, D R S; Riehle, M O

    2014-07-01

    Accurate control over positioning of cells is a highly desirable feature in tissue engineering applications since it allows, for example, population of substrates in a controlled fashion, rather than relying on random seeding. Current methods to achieve a differential distribution of cells mostly use passive patterning methods to change chemical, mechanical or topographic properties of surfaces, making areas differentially permissive to the adhesion of cells. However, these methods have no ad hoc control over the actual deposition of cells. Direct patterning methods like bioprinting offer good control over cell position, but require sophisticated instrumentation and are often cost- and time-intensive. Here, we present a novel electronically controlled method of generating dynamic cell patterns by acoustic trapping of cells at a user-determined position, with a heptagonal acoustic tweezer device. We demonstrate the capability of the device to create complex patterns of cells using the device's ability to re-position acoustic traps by using a phase shift in the acoustic wave, and by switching the configuration of active piezoelectric transducers. Furthermore, we show that by arranging Schwann cells from neonatal rats in a linear pattern we are able to create Bands of Büngner-like structures on a non-structured surface and demonstrate that these features are able to guide neurite outgrowth from neonatal rat dorsal root ganglia. PMID:24817215

  14. Spatial and temporal patterns of subtidal and intertidal crabs excursions

    NASA Astrophysics Data System (ADS)

    Silva, A. C. F.; Boaventura, D. M.; Thompson, R. C.; Hawkins, S. J.

    2014-01-01

    Highly mobile predators such as fish and crabs are known to migrate from the subtidal zone to forage in the intertidal zone at high-tide. The extent and variation of these habitat linking movements along the vertical shore gradient have not been examined before for several species simultaneously, hence not accounting for species interactions. Here, the foraging excursions of Carcinus maenas (L.), Necora puber (Linnaeus, 1767) and Cancer pagurus (Linnaeus, 1758) were assessed in a one-year mark-recapture study on two replicated rocky shores in southwest U.K. A comparison between the abundance of individuals present on the shore at high-tide with those present in refuges exposed at low-tide indicated considerable intertidal migration by all species, showing strong linkage between subtidal and intertidal habitats. Estimates of population size based on recapture of marked individuals indicated that an average of ~ 4000 individuals combined for the three crab species, can be present on the shore during one tidal cycle. There was also a high fidelity of individuals and species to particular shore levels. Underlying mechanisms for these spatial patterns such as prey availability and agonistic interactions are discussed. Survival rates were estimated using the Cormack-Jolly-Seber model from multi-recapture analysis and found to be considerably high with a minimum of 30% for all species. Growth rates were found to vary intraspecifically with size and between seasons. Understanding the temporal and spatial variations in predation pressure by crabs on rocky shores is dependent on knowing who, when and how many of these commercially important crab species depend on intertidal foraging. Previous studies have shown that the diet of these species is strongly based on intertidal prey including key species such as limpets; hence intertidal crab migration could be associated with considerable impacts on intertidal assemblages.

  15. Match analysis and temporal patterns of fatigue in rugby sevens.

    PubMed

    Granatelli, Giampietro; Gabbett, Tim J; Briotti, Gianluca; Padulo, Johnny; Buglione, Antonio; D'Ottavio, Stefano; Ruscello, Bruno M

    2014-03-01

    Rugby sevens is a rapidly growing sport. Match analysis is increasingly being used by sport scientists and coaches to improve the understanding of the physical demands of this sport. This study investigated the physical and physiological demands of elite men's rugby sevens, with special reference to the temporal patterns of fatigue during match play. Nine players, 4 backs and 5 forwards (age 25.1 ± 3.1 years) participated during 2 "Roma 7" international tournaments (2010 and 2011). All the players were at the professional level in the highest Italian rugby union, and 5 of these players also competed at the international level. During the matches (n = 15), the players were filmed to assess game performance. Global positioning system, heart rate (HR), and blood lactate (BLa) concentration data were measured and analyzed. The mean total distance covered throughout matches was 1,221 ± 118 m (first half = 643 ± 70 m and second half = 578 ± 77 m; with a decrease of 11.2%, p > 0.05, Effect Size [ES] = 0.29). The players achieved 88.3 ± 4.2 and 87.7 ± 3.4% of the HRmax during the first and second halves, respectively. The BLa for the first and second halves was 3.9 ± 0.9 and 11.2 ± 1.4 mmol·L, respectively. The decreases in performance occurred consistently in the final 3 minutes of the matches (-40.5% in the distance covered per minute). The difference found in relation to the playing position, although not statistically significant (p = 0.11), showed a large ES (η = 0.20), suggesting possible practical implications. These results demonstrate that rugby sevens is a demanding sport that places stress on both the anaerobic glycolytic and aerobic oxidative energy systems. Strength and conditioning programs designed to train these energy pathways may prevent fatigue-induced reductions in physical performance. PMID:23722109

  16. Intrinsic Temporal Patterning in the Spontaneous Movement of Awake Neonates.

    ERIC Educational Resources Information Center

    Robertson, Steven S.

    1982-01-01

    The temporal organization of spontaneous movement in healthy, awake neonates was studied on the second or third day after birth. Movement was recorded using time lapse photography and quantified as a function of time. Evidence of intrinsic temporal organization among subjects was found. (MP)

  17. Pattern recognition and tomography using crosswell acoustic data

    SciTech Connect

    Albright, J.N.; Terry, D.A.; Bradley, C.R.

    1985-01-01

    Measurements of the travel time of acoustic signals transmitted between wells at the Department of Energy Multi-Well Experiment site (MWX) near Rifle, Colorado, are processed and analyzed. Interpretations relevant to sand geometry and continuity have proved possible through inspection of the signal travel time plotted against the coordinates of transmitter and receiver wellbore positions, or against the depth of receiver and ray path inclination. The continuity of several sands between wells is corroborated. A major lenticular sand terminating between wells could be inferred. To explore the possible distortions in tomographic images derived from crosswell data, synthetic tomographs are constructed from computed travel times of signals transmitted through idealized models from stratigraphy thought to be present at the MWX site. The synthetic tomographs, although preserving the general character of the model stratigraphy, are distorted enough that detailed interpretations are not possible. Horizontal distortions predominate in reconstructions of flat-lying stratigraphy. 7 refs., 9 figs.

  18. Acoustically Evoked Different Vibration Pattern Across the Width of the Cochlea Partition

    NASA Astrophysics Data System (ADS)

    Zha, Dingjun; Chen, Fangyi; Friderberg, Anders; Choudhury, Niloy; Nuttall, Alfred

    2011-11-01

    Using optical low coherence interferometry, the acoustically evoked vibration patterns of the basilar membrane (BM) and reticular lamina (RL) in the first turn of living guinea pigs were measured as function of the radial location. It was demonstrated that the vibration of the BM varied widely in amplitude, but little in phase across the width of the partition, while the RL had a different vibration pattern compared with the BM.

  19. Joint inversion for transponder localization and sound-speed profile temporal variation in high-precision acoustic surveys.

    PubMed

    Li, Zhao; Dosso, Stan E; Sun, Dajun

    2016-07-01

    This letter develops a Bayesian inversion for localizing underwater acoustic transponders using a surface ship which compensates for sound-speed profile (SSP) temporal variation during the survey. The method is based on dividing observed acoustic travel-time data into time segments and including depth-independent SSP variations for each segment as additional unknown parameters to approximate the SSP temporal variation. SSP variations are estimated jointly with transponder locations, rather than calculated separately as in existing two-step inversions. Simulation and sea-trial results show this localization/SSP joint inversion performs better than two-step inversion in terms of localization accuracy, agreement with measured SSP variations, and computational efficiency. PMID:27475210

  20. Sources and Radiation Patterns of Volcano-Acoustic Signals Investigated with Field-Scale Chemical Explosions

    NASA Astrophysics Data System (ADS)

    Bowman, D. C.; Lees, J. M.; Taddeucci, J.; Graettinger, A. H.; Sonder, I.; Valentine, G.

    2014-12-01

    We investigate the processes that give rise to complex acoustic signals during volcanic blasts by monitoring buried chemical explosions with infrasound and audio range microphones, strong motion sensors, and high speed imagery. Acoustic waveforms vary with scaled depth of burial (SDOB, units in meters per cube root of joules), ranging from high amplitude, impulsive, gas expansion dominated signals at low SDOB to low amplitude, longer duration, ground motion dominated signals at high SDOB. Typically, the sudden upward acceleration of the substrate above the blast produces the first acoustic arrival, followed by a second pulse due to the eruption of pressurized gas at the surface. Occasionally, a third overpressure occurs when displaced material decelerates upon impact with the ground. The transition between ground motion dominated and gas release dominated acoustics ranges between 0.0038-0.0018 SDOB, respectively. For example, one explosion registering an SDOB=0.0031 produced two overpressure pulses of approximately equal amplitude, one due to ground motion, the other to gas release. Recorded volcano infrasound has also identified distinct ground motion and gas release components during explosions at Sakurajima, Santiaguito, and Karymsky volcanoes. Our results indicate that infrasound records may provide a proxy for the depth and energy of these explosions. Furthermore, while magma fragmentation models indicate the possibility of several explosions during a single vulcanian eruption (Alidibirov, Bull Volc., 1994), our results suggest that a single explosion can also produce complex acoustic signals. Thus acoustic records alone cannot be used to distinguish between single explosions and multiple closely-spaced blasts at volcanoes. Results from a series of lateral blasts during the 2014 field experiment further indicates whether vent geometry can produce directional acoustic radiation patterns like those observed at Tungarahua volcano (Kim et al., GJI, 2012). Beside

  1. Flow patterns and transport in Rayleigh surface acoustic wave streaming: combined finite element method and raytracing numerics versus experiments.

    PubMed

    Frommelt, Thomas; Gogel, Daniel; Kostur, Marcin; Talkner, Peter; Hänggi, Peter; Wixforth, Achim

    2008-10-01

    This work presents an approach for determining the streaming patterns that are generated by Rayleigh surface acoustic waves in arbitrary 3-D geometries by finite element method (FEM) simulations. An efficient raytracing algorithm is applied on the acoustic subproblem to avoid the unbearable memory demands and computational time of a conventional FEM acoustics simulation in 3-D. The acoustic streaming interaction is modeled by a body force term in the Stokes equation. In comparisons between experiments and simulated flow patterns, we demonstrate the quality of the proposed technique. PMID:18986877

  2. Pattern recognition of Landsat data based upon temporal trend analysis

    NASA Technical Reports Server (NTRS)

    Engvall, J. L.; Tubbs, J. D.; Holmes, Q. A.

    1977-01-01

    The Delta Classifier defined as an agricultural crop classification scheme employing a temporal trend procedure is applied to more than 100 different Landsat data sets collected during the 1974-1975 growing season throughout the major wheat-producing regions of the United States. The classification approach stresses examination of temporal trends of the Landsat mean vectors of crops in the absence of corresponding ground truth information. It is shown that the resulting classifications compare favorably to ground truth estimates for wheat proportion in those cases where ground truth is available, and that the temporal trend procedure yields estimates of the wheat proportion that are comparable to the best results from maximum likelihood classification with photointerpreter-defined training fields.

  3. Acoustics

    NASA Astrophysics Data System (ADS)

    The acoustics research activities of the DLR fluid-mechanics department (Forschungsbereich Stroemungsmechanik) during 1988 are surveyed and illustrated with extensive diagrams, drawings, graphs, and photographs. Particular attention is given to studies of helicopter rotor noise (high-speed impulsive noise, blade/vortex interaction noise, and main/tail-rotor interaction noise), propeller noise (temperature, angle-of-attack, and nonuniform-flow effects), noise certification, and industrial acoustics (road-vehicle flow noise and airport noise-control installations).

  4. Assessing the value of information in climber's guidebooks to derive spatio-temporal rockfall patterns

    NASA Astrophysics Data System (ADS)

    Temme, A. J. A. M.

    2012-04-01

    Rockfall rates in mountain ranges are expensive to measure over large spatial scales, mainly due to the inaccessibility of mountainous terrain. Existing methods to measure rockfall include acoustic methods (listening to the rock's impact or creation by frost weathering) , spectral methods (looking at the colour of mountain faces to determine their freshness and by extension the time since last rockfall) and volumetric methods (measuring the volume that fell). These methods, especially in combination, have allowed researchers to quantitatively derive rates (and distribution of rates over time) of rockfall for several well studied locations. However, the small spatial support of these methods means that results are only valid for small well-studied locations. This is a problem when we want to derive baseline information on rockfall rates over entire mountain chains and ranges - which is important to study their temporal distribution and their relation with climate change. This contribution explores the potential of information contained in climber's guidebooks to derive qualitative rockfall rates with large spatial and temporal coverage. Climber's guidebooks have been published since the early 1900's, giving prospective mountaineers strongly codified information about routes and conditions expected along the way. The information about the looseness of rocks, which is clearly important for climbers from a safety perspective, may also be useful to link to rockfall rates. I have used a series of guidebooks published at irregular intervals for the Bernese Oberland in Switzerland to study the change in descriptions of looseness of rocks for a number of famous climbing routes. These routes were selected because of the opportunity to complement information in guidebooks with other (visual and written) sources of information. Results indicate that descriptions of looseness of rock can be used to derive a qualitative pattern of rockfall, especially over larger spatial scales

  5. Temporal motifs reveal homophily, gender-specific patterns, and group talk in call sequences.

    PubMed

    Kovanen, Lauri; Kaski, Kimmo; Kertész, János; Saramäki, Jari

    2013-11-01

    Recent studies on electronic communication records have shown that human communication has complex temporal structure. We study how communication patterns that involve multiple individuals are affected by attributes such as sex and age. To this end, we represent the communication records as a colored temporal network where node color is used to represent individuals' attributes, and identify patterns known as temporal motifs. We then construct a null model for the occurrence of temporal motifs that takes into account the interaction frequencies and connectivity between nodes of different colors. This null model allows us to detect significant patterns in call sequences that cannot be observed in a static network that uses interaction frequencies as link weights. We find sex-related differences in communication patterns in a large dataset of mobile phone records and show the existence of temporal homophily, the tendency of similar individuals to participate in communication patterns beyond what would be expected on the basis of their average interaction frequencies. We also show that temporal patterns differ between dense and sparse neighborhoods in the network. Because also this result is independent of interaction frequencies, it can be seen as an extension of Granovetter's hypothesis to temporal networks. PMID:24145424

  6. Detection of acoustic repetition for very long stochastic patterns.

    PubMed

    Warren, R M; Bashford, J A; Cooley, J M; Brubaker, B S

    2001-01-01

    Guttman and Julesz (1963) employed recycling frozen noise segments (RFNs) as model stimuli in their classic study of the lower limits for periodicity detection and short-term auditory memory. They reported that listeners can hear iteration of these stochastic signals effortlessly as "motorboating" for repetition periods ranging from 50 to 250 msec and as "whooshing" from 250 msec to 1 sec. Both motorboating and whooshing RFNs are global percepts encompassing the entire period, as are RFNs in the pitch range (repetition periods shorter than 50 msec). However, with continued listening to whooshing (but not motorboating) RFNs, individuals hear recurrent brief components such as clanks and thumps that are characteristic of the particular waveform. Experiment 1 of the present study describes a cross-modal cuing procedure that enables listeners to store and then recognize the recurrence of portions of frozen noise waveforms that are repeated after intervals of 10 sec or more. Experiment 2 compares the relative saliencies of different spectral regions in enabling listeners to detect repetition of these long-period patterns. Special difficulty was encountered with the 6-kHz band of RFNs, possibly due to the lack of fine-structure phase locking at this frequency range. In addition, a similarity is noted between the organizational principles operating over particular durational ranges of stochastic patterns and the characteristics of traditional hierarchical units of speech having corresponding durations. PMID:11304013

  7. A model for optimizing file access patterns using spatio-temporal parallelism

    SciTech Connect

    Boonthanome, Nouanesengsy; Patchett, John; Geveci, Berk; Ahrens, James; Bauer, Andy; Chaudhary, Aashish; Miller, Ross G.; Shipman, Galen M.; Williams, Dean N.

    2013-01-01

    For many years now, I/O read time has been recognized as the primary bottleneck for parallel visualization and analysis of large-scale data. In this paper, we introduce a model that can estimate the read time for a file stored in a parallel filesystem when given the file access pattern. Read times ultimately depend on how the file is stored and the access pattern used to read the file. The file access pattern will be dictated by the type of parallel decomposition used. We employ spatio-temporal parallelism, which combines both spatial and temporal parallelism, to provide greater flexibility to possible file access patterns. Using our model, we were able to configure the spatio-temporal parallelism to design optimized read access patterns that resulted in a speedup factor of approximately 400 over traditional file access patterns.

  8. Spatial and Temporal Patterns of Tidal Dissipation in Synchronous Satellites

    NASA Technical Reports Server (NTRS)

    Bills, Bruce G.; Aharonson, Oded

    2003-01-01

    Tidal heating is an important energy source for several solar system bodies, and there is a wide-spread perception that the pattern of surface heat flow is diagnostic of internal structure. We wish to clarify that situation. Our analysis depends upon two important assumptions: First, that heat transport is dominated by conduction. Second, that the body can be modeled by a sequence of spherically symmetric layers, each with a linear visco-elastic rheology. Under these assumptions, surface heat flow patterns in tidally dominated satellites will reflect radially integrated dissipation patterns. For synchronously rotating satellites with zero obliquity, this pattern depends quite strongly on orbital eccentricity but relatively little on purely radial variations in internal structure. The total amount of heat generated within the body does depend sensitively on internal structure, but the spatial pattern is rather insensitive to structure, especially at low orbital eccentricities.

  9. General asymmetric neutral networks and structure design by genetic algorithms: A learning rule for temporal patterns

    SciTech Connect

    Bornholdt, S.; Graudenz, D.

    1993-07-01

    A learning algorithm based on genetic algorithms for asymmetric neural networks with an arbitrary structure is presented. It is suited for the learning of temporal patterns and leads to stable neural networks with feedback.

  10. Dexterous acoustic trapping and patterning of particles assisted by phononic crystal plate

    SciTech Connect

    Wang, Tian; Ke, Manzhu Xu, Shengjun; Feng, Junheng; Qiu, Chunyin; Liu, Zhengyou

    2015-04-20

    In this letter, we present experimental demonstration of multi-particles trapping and patterning by the artificially engineered acoustic field of phononic crystal plate. Polystyrene particles are precisely trapped and patterned in two dimensional arrays, for example, the square, triangular, or quasi-periodic arrays, depending on the structures of the phononic crystal plates with varying sub-wavelength holes array. Analysis shows that the enhanced acoustic radiation force, induced by the resonant transmission field highly localized near the sub-wavelength apertures, accounts for the particles self-organizing. It can be envisaged that this kind of simple design of phononic crystal plates would pave an alternative route for self-assembly of particles and may be utilized in the lab-on-a-chip devices.

  11. Observation of spatio-temporal pattern in magnetised rf plasmas

    NASA Astrophysics Data System (ADS)

    Bandyopadhyay, P.; Sharma, D.; Konopka, U.; Morfill, G.

    2014-02-01

    We address an experimental observation of pattern formation in a magnetised rf plasma. The experiments are carried out in a electrically grounded aluminium chamber which is housed inside a rotatable superconducting magnetic coil. The plasma is formed by applying a rf voltage in parallel plate electrodes in push-pull mode under the background of argon gas. The time evolution of plasma intensity shows that a homogeneous plasma breaks into several concentric radial spatiotemoral bright and dark rings. These rings propagate radially at considerably low pressure and a constant magnetic field. These patterns are observed to trap small dust particles/grains in their potential. Exploiting this property of the patterns, a novel technique to measure the electric field associated with the patterns is described. The resulting estimates of the corresponding field intensity are presented. At other specific discharge parameters the plasma shows a range of special type of characteristic structures observed in certain other chemical, mechanical and biological systems.

  12. Analysis of spatial-temporal gene expression patterns reveals dynamics and regionalization in developing mouse brain

    PubMed Central

    Chou, Shen-Ju; Wang, Chindi; Sintupisut, Nardnisa; Niou, Zhen-Xian; Lin, Chih-Hsu; Li, Ker-Chau; Yeang, Chen-Hsiang

    2016-01-01

    Allen Brain Atlas (ABA) provides a valuable resource of spatial/temporal gene expressions in mammalian brains. Despite rich information extracted from this database, current analyses suffer from several limitations. First, most studies are either gene-centric or region-centric, thus are inadequate to capture the superposition of multiple spatial-temporal patterns. Second, standard tools of expression analysis such as matrix factorization can capture those patterns but do not explicitly incorporate spatial dependency. To overcome those limitations, we proposed a computational method to detect recurrent patterns in the spatial-temporal gene expression data of developing mouse brains. We demonstrated that regional distinction in brain development could be revealed by localized gene expression patterns. The patterns expressed in the forebrain, medullary and pontomedullary, and basal ganglia are enriched with genes involved in forebrain development, locomotory behavior, and dopamine metabolism respectively. In addition, the timing of global gene expression patterns reflects the general trends of molecular events in mouse brain development. Furthermore, we validated functional implications of the inferred patterns by showing genes sharing similar spatial-temporal expression patterns with Lhx2 exhibited differential expression in the embryonic forebrains of Lhx2 mutant mice. These analysis outcomes confirm the utility of recurrent expression patterns in studying brain development. PMID:26786896

  13. Acoustics

    NASA Technical Reports Server (NTRS)

    Goodman, Jerry R.; Grosveld, Ferdinand

    2007-01-01

    The acoustics environment in space operations is important to maintain at manageable levels so that the crewperson can remain safe, functional, effective, and reasonably comfortable. High acoustic levels can produce temporary or permanent hearing loss, or cause other physiological symptoms such as auditory pain, headaches, discomfort, strain in the vocal cords, or fatigue. Noise is defined as undesirable sound. Excessive noise may result in psychological effects such as irritability, inability to concentrate, decrease in productivity, annoyance, errors in judgment, and distraction. A noisy environment can also result in the inability to sleep, or sleep well. Elevated noise levels can affect the ability to communicate, understand what is being said, hear what is going on in the environment, degrade crew performance and operations, and create habitability concerns. Superfluous noise emissions can also create the inability to hear alarms or other important auditory cues such as an equipment malfunctioning. Recent space flight experience, evaluations of the requirements in crew habitable areas, and lessons learned (Goodman 2003; Allen and Goodman 2003; Pilkinton 2003; Grosveld et al. 2003) show the importance of maintaining an acceptable acoustics environment. This is best accomplished by having a high-quality set of limits/requirements early in the program, the "designing in" of acoustics in the development of hardware and systems, and by monitoring, testing and verifying the levels to ensure that they are acceptable.

  14. SPATIAL AND TEMPORAL PATTERNS OF ACID PRECIPITATION AND THEIR INTERPRETATION

    EPA Science Inventory

    Using data compiled from seven nationwide precipitation chemistry networks in the U.S. and Canada, the spatial distribution of hydrogen, sulfate, and nitrate ions in North America is discussed. Geographic patterns of concentration and deposition are characterized using isopleth m...

  15. Cultural and environmental influences on temporal-spectral development patterns of corn and soybeans

    NASA Technical Reports Server (NTRS)

    Crist, E. P.

    1982-01-01

    A technique for evaluating crop temporal-spectral development patterns is described and applied to the analysis of cropping practices and environmental conditions as they affect reflectance characteristics of corn and soybean canopies. Typical variations in field conditions are shown to exert significant influences on the spectral development patterns, and thereby to affect the separability of the two crops.

  16. Temporal pattern of pulse wave velocity during brachial hyperemia reactivity

    NASA Astrophysics Data System (ADS)

    Graf, S.; Valero, M. J.; Craiem, D.; Torrado, J.; Farro, I.; Zócalo, Y.; Valls, G.; Bía, D.; Armentano, R. L.

    2011-09-01

    Endothelial function can be assessed non-invasively with ultrasound, analyzing the change of brachial diameter in response to transient forearm ischemia. We propose a new technique based in the same principle, but analyzing a continuous recording of carotid-radial pulse wave velocity (PWV) instead of diameter. PWV was measured on 10 healthy subjects of 22±2 years before and after 5 minutes forearm occlusion. After 59 ± 31 seconds of cuff release PWV decreased 21 ± 9% compared to baseline, reestablishing the same after 533 ± 65 seconds. There were no significant changes observed in blood pressure. When repeating the study one hour later in 5 subjects, we obtained a coefficient of repeatability of 4.8%. In conclusion, through analysis of beat to beat carotid-radial PWV it was possible to characterize the temporal profiles and analyze the acute changes in response to a reactive hyperemia. The results show that the technique has a high sensitivity and repeatability.

  17. Temporal patterns of thermal emission directionality of crop canopies

    NASA Astrophysics Data System (ADS)

    Huang, Huaguo; Liu, Qinhuo; Qin, Wenhan; Du, Yongming; Li, Xiaowen

    2011-03-01

    Many field experiments have observed significant temporal variations of thermal infrared (TIR) emission directionality, making it necessary to explain this phenomenon quantitatively to exploit potential applications of the directional remotely sensed TIR observation. The main objective of this paper is to determine when and how the significant directional effect appears. Two models, TRGM and Cupid, are linked to simulate the temporal variations of directional brightness temperature TB(θ) of crop canopies, including winter wheat and summer corn. Two indicators are defined: (1) ΔTB,AVG representing the mean difference between nadir TB(0) and off-nadir TB(55) and (2) ΔTB,STD representing the standard deviation of TB(55) for different view azimuth angles. Simulation results show that the highest ΔTB,AVG of up to 4°C appears mostly at midday (1200-1300 LT), while the lowest ΔTB,AVG appears mostly in the early morning (0700-0800 LT) or late afternoon (1700-1800 LT). The ΔTB,STD is about one third of ΔTB,AVG and should not be neglected given its considerable value at around 1400 LT. This trend has been proven through field measurements at both wheat and corn sites. The major factors affecting the trend are also identified using sensitivity analysis. Among the major factors, soil water content, LAI, and solar radiation are the three most significant factors, whereas the wind speed and air temperature have a larger effect on ΔTB,AVG than air humidity. It is interesting that ΔTB,AVG reaches a maximum value when the LAI is around 0.8. Further analysis shows that ΔTB,AVG is related to soil surface net radiation, which will be useful in net radiation estimation.

  18. Temporal patterns of gene expression during calyx of held development.

    PubMed

    Kolson, Douglas R; Wan, Jun; Wu, Jonathan; Dehoff, Marlin; Brandebura, Ashley N; Qian, Jiang; Mathers, Peter H; Spirou, George A

    2016-02-01

    Relating changes in gene expression to discrete developmental events remains an elusive challenge in neuroscience, in part because most neural territories are comprised of multiple cell types that mature over extended periods of time. The medial nucleus of the trapezoid body (MNTB) is an attractive vertebrate model system that contains a nearly homogeneous population of neurons, which are innervated by large glutamatergic nerve terminals called calyces of Held (CH). Key steps in maturation of CHs and MNTB neurons, including CH growth and competition, occur very quickly for most cells between postnatal days (P)2 and P6. Therefore, we characterized genome-wide changes in this system, with dense temporal sampling during the first postnatal week. We identified 541 genes whose expression changed significantly between P0-6 and clustered them into eight groups based on temporal expression profiles. Candidate genes from each of the eight profile groups were validated in separate samples by qPCR. Our tissue sample permitted comparison of known glial and neuronal transcripts and revealed that monotonically increasing or decreasing expression profiles tended to be associated with glia and neurons, respectively. Gene ontology revealed enrichment of genes involved in axon pathfinding, cell differentiation, cell adhesion and extracellular matrix. The latter category included elements of perineuronal nets, a prominent feature of MNTB neurons that is morphologically distinct by P6, when CH growth and competition are resolved onto nearly all MNTB neurons. These results provide a genetic framework for investigation of general mechanisms responsible for nerve terminal growth and maturation. PMID:26014473

  19. Acoustic correlates of English rhythmic patterns for American versus Japanese speakers.

    PubMed

    Mori, Yoko; Hori, Tomoko; Erickson, Donna

    2014-01-01

    This study investigates acoustic correlates of English rhythmic patterns for 20 American English speakers (AS) and 42 Japanese learners of English (JS). The results indicate that for AS in an English sentence where monosyllabic content and function words alternate, the vowels in content words are over twice as long as those in function words, resulting in alternating long-short vowels. In contrast, the JS show no stress-related duration control and realize a similar rhythmic pattern mostly through recursive high-low fundamental frequency (F0). In a sentence with a sequence of content words in which 4 stressed syllables occur successively, the AS show recursion of strong-weak syllables by means of F0, intensity and first formant, whereas JS show inconsistent stress patterns. These results indicate that the AS apply different strategies for implementing rhythmic alternation depending on sentence stress patterns, and these strategies are different from those of JS. PMID:25227394

  20. Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves.

    PubMed

    Collins, David J; Morahan, Belinda; Garcia-Bustos, Jose; Doerig, Christian; Plebanski, Magdalena; Neild, Adrian

    2015-01-01

    In single-cell analysis, cellular activity and parameters are assayed on an individual, rather than population-average basis. Essential to observing the activity of these cells over time is the ability to trap, pattern and retain them, for which previous single-cell-patterning work has principally made use of mechanical methods. While successful as a long-term cell-patterning strategy, these devices remain essentially single use. Here we introduce a new method for the patterning of multiple spatially separated single particles and cells using high-frequency acoustic fields with one cell per acoustic well. We characterize and demonstrate patterning for both a range of particle sizes and the capture and patterning of cells, including human lymphocytes and red blood cells infected by the malarial parasite Plasmodium falciparum. This ability is made possible by a hitherto unexplored regime where the acoustic wavelength is on the same order as the cell dimensions. PMID:26522429

  1. Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves

    PubMed Central

    Collins, David J.; Morahan, Belinda; Garcia-Bustos, Jose; Doerig, Christian; Plebanski, Magdalena; Neild, Adrian

    2015-01-01

    In single-cell analysis, cellular activity and parameters are assayed on an individual, rather than population-average basis. Essential to observing the activity of these cells over time is the ability to trap, pattern and retain them, for which previous single-cell-patterning work has principally made use of mechanical methods. While successful as a long-term cell-patterning strategy, these devices remain essentially single use. Here we introduce a new method for the patterning of multiple spatially separated single particles and cells using high-frequency acoustic fields with one cell per acoustic well. We characterize and demonstrate patterning for both a range of particle sizes and the capture and patterning of cells, including human lymphocytes and red blood cells infected by the malarial parasite Plasmodium falciparum. This ability is made possible by a hitherto unexplored regime where the acoustic wavelength is on the same order as the cell dimensions. PMID:26522429

  2. Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves

    NASA Astrophysics Data System (ADS)

    Collins, David J.; Morahan, Belinda; Garcia-Bustos, Jose; Doerig, Christian; Plebanski, Magdalena; Neild, Adrian

    2015-11-01

    In single-cell analysis, cellular activity and parameters are assayed on an individual, rather than population-average basis. Essential to observing the activity of these cells over time is the ability to trap, pattern and retain them, for which previous single-cell-patterning work has principally made use of mechanical methods. While successful as a long-term cell-patterning strategy, these devices remain essentially single use. Here we introduce a new method for the patterning of multiple spatially separated single particles and cells using high-frequency acoustic fields with one cell per acoustic well. We characterize and demonstrate patterning for both a range of particle sizes and the capture and patterning of cells, including human lymphocytes and red blood cells infected by the malarial parasite Plasmodium falciparum. This ability is made possible by a hitherto unexplored regime where the acoustic wavelength is on the same order as the cell dimensions.

  3. Effective beam pattern of the Blainville's beaked whale (Mesoplodon densirostris) and implications for passive acoustic monitoring.

    PubMed

    Shaffer, Jessica Ward; Moretti, David; Jarvis, Susan; Tyack, Peter; Johnson, Mark

    2013-03-01

    The presence of beaked whales in mass-strandings coincident with navy maneuvers has prompted the development of methods to detect these cryptic animals. Blainville's beaked whales, Mesoplodon densirostris, produce distinctive echolocation clicks during long foraging dives making passive acoustic detection a possibility. However, performance of passive acoustic monitoring depends upon the source level, beam pattern, and clicking behavior of the whales. In this study, clicks recorded from Digital acoustic Tags (DTags) attached to four M. densirostris were linked to simultaneous recordings from an 82-hydrophone bottom-mounted array to derive the source level and beam pattern of the clicks, as steps towards estimating their detectability. The mean estimated on-axis apparent source level for the four whales was 201 dBrms97. The mean 3 dB beamwidth and directivity index, estimated from sequences of clicks directed towards the far-field hydrophones, were 13° and 23 dB, respectively. While searching for prey, Blainville's beaked whales scan their heads horizontally at a mean rate of 3.6°/s over an angular range of some +/-10°. Thus, while the DI indicates a narrow beam, the area of ensonification over a complete foraging dive is large given the combined effects of body and head movements associated with foraging. PMID:23464046

  4. Temporal Patterns in Seawater Quality from Dredging in Tropical Environments

    PubMed Central

    Jones, Ross; Fisher, Rebecca; Stark, Clair; Ridd, Peter

    2015-01-01

    Maintenance and capital dredging represents a potential risk to tropical environments, especially in turbidity-sensitive environments such as coral reefs. There is little detailed, published observational time-series data that quantifies how dredging affects seawater quality conditions temporally and spatially. This information is needed to test realistic exposure scenarios to better understand the seawater-quality implications of dredging and ultimately to better predict and manage impacts of future projects. Using data from three recent major capital dredging programs in North Western Australia, the extent and duration of natural (baseline) and dredging-related turbidity events are described over periods ranging from hours to weeks. Very close to dredging i.e. <500 m distance, a characteristic features of these particular case studies was high temporal variability. Over several hours suspended sediment concentrations (SSCs) can range from 100–500 mg L-1. Less turbid conditions (10–80 mg L-1) can persist over several days but over longer periods (weeks to months) averages were <10 mg L-1. During turbidity events all benthic light was sometimes extinguished, even in the shallow reefal environment, however a much more common feature was very low light ‘caliginous’ or daytime twilight periods. Compared to pre-dredging conditions, dredging increased the intensity, duration and frequency of the turbidity events by 10-, 5- and 3-fold respectively (at sites <500 m from dredging). However, when averaged across the entire dredging period of 80–180 weeks, turbidity values only increased by 2–3 fold above pre-dredging levels. Similarly, the upper percentile values (e.g., P99, P95) of seawater quality parameters can be highly elevated over short periods, but converge to values only marginally above baseline states over longer periods. Dredging in these studies altered the overall probability density distribution, increasing the frequency of extreme values. As such

  5. Temporal and spatial patterns of suicides in Stockholm's subway stations.

    PubMed

    Uittenbogaard, Adriaan; Ceccato, Vania

    2015-08-01

    This paper investigates the potential temporal and spatial variations of suicides in subway stations in Stockholm, Sweden. The study also assesses whether the variation in suicide rates is related to the station environments by controlling for each station's location and a number of contextual factors using regression models and geographical information systems (GIS). Data on accidents are used as references for the analysis of suicides. Findings show that suicides tend to occur during the day and in the spring. They are concentrated in the main transportation hubs but, interestingly, during off-peak hours. However, the highest rates of suicides per passenger are found in Stockholm's subway stations located in the Southern outskirts. More than half of the variation in suicide rates is associated with stations that have walls between the two sides of the platform but still allow some visibility from passers-by. The surrounding environment and socioeconomic context show little effect on suicide rates, but stations embedded in areas with high drug-related crime rates tend to show higher suicide rates. PMID:25958035

  6. Temporal Variabilities in Genetic Patterns and Antibiotic Resistance Profiles of Enterococci Isolated from Human Feces

    PubMed Central

    Nishiyama, Masateru; Shimauchi, Hidetaka; Suzuki, Yoshihiro

    2016-01-01

    Temporal variabilities in the genetic patterns and antibiotic resistance profiles of enterococci were monitored over a 7-month period. Enterococcus faecalis isolates (103 strains) collected from feces showed only one genetic pattern and antibiotic resistance profile within 0 d and 30 d. In contrast, after 60 d and 90 d, the genetic patterns and antibiotic resistance profiles of all E. faecalis isolates (8 strains) clearly differed within 30 d. These results indicate that the genetic patterns and antibiotic resistance profiles of E. faecalis in human feces changed to completely dissimilar patterns between 1 and 2 months. PMID:27265342

  7. Temporally diverse firing patterns in olfactory receptor neurons underlie spatiotemporal neural codes for odors

    PubMed Central

    Raman, Baranidharan; Joseph, Joby; Tang, Jeff; Stopfer, Mark

    2010-01-01

    Odorants are represented as spatiotemporal patterns of spikes in neurons of the antennal lobe (AL, insects) and olfactory bulb (OB, vertebrates). These response patterns have been thought to arise primarily from interactions within the AL/OB, an idea supported, in part, by the assumption that olfactory receptor neurons (ORNs) respond to odorants with simple firing patterns. However, activating the AL directly with simple pulses of current evoked responses in AL neurons that were much less diverse, complex, and enduring than responses elicited by odorants. Similarly, models of the AL driven by simplistic inputs generated relatively simple output. How then are dynamic neural codes for odors generated? Consistent with recent results from several other species, our recordings from locust ORNs showed a great diversity of temporal structure. Further, we found that, viewed as a population, many response features of ORNs were remarkably similar to those observed within the AL. Using a set of computational models constrained by our electrophysiological recordings, we found that the temporal heterogeneity of responses of ORNs critically underlies the generation of spatiotemporal odor codes in the AL. A test then performed in vivo confirmed that, given temporally homogeneous input, the AL cannot create diverse spatiotemporal patterns on its own; however, given temporally heterogeneous input, the AL generated realistic firing patterns. Finally, given the temporally structured input provided by ORNs, we clarified several separate, additional contributions of the AL to olfactory information processing. Thus, our results demonstrate the origin and subsequent reformatting of spatiotemporal neural codes for odors. PMID:20147528

  8. Two temporal functions of Glass: Ommatidium patterning and photoreceptor differentiation.

    PubMed

    Liang, Xulong; Mahato, Simpla; Hemmerich, Chris; Zelhof, Andrew C

    2016-06-01

    Much progress has been made in elucidating the molecular networks required for specifying retinal cells, including photoreceptors, but the downstream mechanisms that maintain identity and regulate differentiation remain poorly understood. Here, we report that the transcription factor Glass has a dual role in establishing a functional Drosophila eye. Utilizing conditional rescue approaches, we confirm that persistent defects in ommatidium patterning combined with cell death correlate with the overall disruption of eye morphology in glass mutants. In addition, we reveal that Glass exhibits a separable role in regulating photoreceptor differentiation. In particular, we demonstrate the apparent loss of glass mutant photoreceptors is not only due to cell death but also a failure of the surviving photoreceptors to complete differentiation. Moreover, the late reintroduction of Glass in these developmentally stalled photoreceptors is capable of restoring differentiation in the absence of correct ommatidium patterning. Mechanistically, transcription profiling at the time of differentiation reveals that Glass is necessary for the expression of many genes implicated in differentiation, i.e. rhabdomere morphogenesis, phototransduction, and synaptogenesis. Specifically, we show Glass directly regulates the expression of Pph13, which encodes a transcription factor necessary for opsin expression and rhabdomere morphogenesis. Finally, we demonstrate the ability of Glass to choreograph photoreceptor differentiation is conserved between Drosophila and Tribolium, two holometabolous insects. Altogether, our work identifies a fundamental regulatory mechanism to generate the full complement of cells required for a functional rhabdomeric visual system and provides a critical framework to investigate the basis of differentiation and maintenance of photoreceptor identity. PMID:27105580

  9. Spatial and Temporal Emergence Pattern of Lyme Disease in Virginia

    PubMed Central

    Li, Jie; Kolivras, Korine N.; Hong, Yili; Duan, Yuanyuan; Seukep, Sara E.; Prisley, Stephen P.; Campbell, James B.; Gaines, David N.

    2014-01-01

    The emergence of infectious diseases over the past several decades has highlighted the need to better understand epidemics and prepare for the spread of diseases into new areas. As these diseases expand their geographic range, cases are recorded at different geographic locations over time, making the analysis and prediction of this expansion complicated. In this study, we analyze spatial patterns of the disease using a statistical smoothing analysis based on areal (census tract level) count data of Lyme disease cases in Virginia from 1998 to 2011. We also use space and space–time scan statistics to reveal the presence of clusters in the spatial and spatiotemporal distribution of Lyme disease. Our results confirm and quantify the continued emergence of Lyme disease to the south and west in states along the eastern coast of the United States. The results also highlight areas where education and surveillance needs are highest. PMID:25331806

  10. Comparison of temporal and spectral scattering methods using acoustically large breast models derived from magnetic resonance images

    PubMed Central

    Hesford, Andrew J.; Tillett, Jason C.; Astheimer, Jeffrey P.; Waag, Robert C.

    2014-01-01

    Accurate and efficient modeling of ultrasound propagation through realistic tissue models is important to many aspects of clinical ultrasound imaging. Simplified problems with known solutions are often used to study and validate numerical methods. Greater confidence in a time-domain k-space method and a frequency-domain fast multipole method is established in this paper by analyzing results for realistic models of the human breast. Models of breast tissue were produced by segmenting magnetic resonance images of ex vivo specimens into seven distinct tissue types. After confirming with histologic analysis by pathologists that the model structures mimicked in vivo breast, the tissue types were mapped to variations in sound speed and acoustic absorption. Calculations of acoustic scattering by the resulting model were performed on massively parallel supercomputer clusters using parallel implementations of the k-space method and the fast multipole method. The efficient use of these resources was confirmed by parallel efficiency and scalability studies using large-scale, realistic tissue models. Comparisons between the temporal and spectral results were performed in representative planes by Fourier transforming the temporal results. An RMS field error less than 3% throughout the model volume confirms the accuracy of the methods for modeling ultrasound propagation through human breast. PMID:25096103

  11. Comparison of temporal and spectral scattering methods using acoustically large breast models derived from magnetic resonance images.

    PubMed

    Hesford, Andrew J; Tillett, Jason C; Astheimer, Jeffrey P; Waag, Robert C

    2014-08-01

    Accurate and efficient modeling of ultrasound propagation through realistic tissue models is important to many aspects of clinical ultrasound imaging. Simplified problems with known solutions are often used to study and validate numerical methods. Greater confidence in a time-domain k-space method and a frequency-domain fast multipole method is established in this paper by analyzing results for realistic models of the human breast. Models of breast tissue were produced by segmenting magnetic resonance images of ex vivo specimens into seven distinct tissue types. After confirming with histologic analysis by pathologists that the model structures mimicked in vivo breast, the tissue types were mapped to variations in sound speed and acoustic absorption. Calculations of acoustic scattering by the resulting model were performed on massively parallel supercomputer clusters using parallel implementations of the k-space method and the fast multipole method. The efficient use of these resources was confirmed by parallel efficiency and scalability studies using large-scale, realistic tissue models. Comparisons between the temporal and spectral results were performed in representative planes by Fourier transforming the temporal results. An RMS field error less than 3% throughout the model volume confirms the accuracy of the methods for modeling ultrasound propagation through human breast. PMID:25096103

  12. Processes driving temporal dynamics in the nested pattern of waterbird communities

    NASA Astrophysics Data System (ADS)

    Sebastián-González, Esther; Botella, Francisco; Paracuellos, Mariano; Sánchez-Zapata, José Antonio

    2010-03-01

    Nestedness is a common pattern of bird communities in habitat patches, and it describes the situation where smaller communities form proper subsets of larger communities. Several studies have examined the processes causing nestedness and the implications for conservation, but few have considered the temporal changes in these processes. We used data from 6 years and two seasons (wintering and breeding) to explore the temporal changes in the causes of the nested pattern of a waterbird community in man-made irrigation ponds. Nestedness was significant in both seasons and in all years, and thus temporally stable. Despite the nestedness of waterbird communities, the proportion of idiosyncratic species (species that do not follow the nested pattern) was higher than in other studies. Furthermore, the idiosyncratic species often had endangered status. Selective colonisation and, mainly, selective extinction were the most important factors producing the nested pattern. In addition, the nested structure of the microhabitats at the ponds also caused the pattern. The causes of the pattern changed temporally even in the absence of big disturbance events. In general, breeding communities were more stable than wintering communities, and the seasonal differences in the causes of the nestedness were larger than the inter-annual differences. Consequently, studies of community nestedness from only one snapshot in time should be considered with caution.

  13. The dynamics of spatio-temporal Rho GTPase signaling: formation of signaling patterns

    PubMed Central

    Fritz, Rafael Dominik; Pertz, Olivier

    2016-01-01

    Rho GTPases are crucial signaling molecules that regulate a plethora of biological functions. Traditional biochemical, cell biological, and genetic approaches have founded the basis of Rho GTPase biology. The development of biosensors then allowed measuring Rho GTPase activity with unprecedented spatio-temporal resolution. This revealed that Rho GTPase activity fluctuates on time and length scales of tens of seconds and micrometers, respectively. In this review, we describe Rho GTPase activity patterns observed in different cell systems. We then discuss the growing body of evidence that upstream regulators such as guanine nucleotide exchange factors and GTPase-activating proteins shape these patterns by precisely controlling the spatio-temporal flux of Rho GTPase activity. Finally, we comment on additional mechanisms that might feed into the regulation of these signaling patterns and on novel technologies required to dissect this spatio-temporal complexity. PMID:27158467

  14. Different temporal patterns of vector soliton bunching induced by polarization-dependent saturable absorber

    NASA Astrophysics Data System (ADS)

    Chen, Wei-Cheng; Chen, Guo-Jie; Han, Ding-An; Li, Bin

    2014-06-01

    A fiber laser with either a polarization-independent semiconductor saturable absorption mirror (PID-SESAM) or a polarization-dependent SESAM (PD-SESAM) as a passive mode-locker is constructed for obtaining the vector soliton bunching. The temporal patterns of the soliton bunching generated from the fiber laser with a PD-SESAM are much more abundant than that in fiber laser with a PID-SESAM. Only the vibrating soliton bunching is generated from the fiber laser with a PID-SESAM. However, there are another three interesting temporal patterns of the soliton bunching generated from the fiber laser with a PD-SESAM except for the vibrating soliton bunching. They are variable length soliton bunching, breathing soliton bunching and stable soliton bunching along the slow axis induced by polarization instability. It is found that the polarization property of the saturable absorber plays a pivotal role for achieving different temporal patterns of the soliton bunching.

  15. Learning Temporal Patterns of Risk in a Predator-Diverse Environment

    PubMed Central

    Bosiger, Yoland J.; Lonnstedt, Oona M.; McCormick, Mark I.; Ferrari, Maud C. O.

    2012-01-01

    Predation plays a major role in shaping prey behaviour. Temporal patterns of predation risk have been shown to drive daily activity and foraging patterns in prey. Yet the ability to respond to temporal patterns of predation risk in environments inhabited by highly diverse predator communities, such as rainforests and coral reefs, has received surprisingly little attention. In this study, we investigated whether juvenile marine fish, Pomacentrus moluccensis (lemon damselfish), have the ability to learn to adjust the intensity of their antipredator response to match the daily temporal patterns of predation risk they experience. Groups of lemon damselfish were exposed to one of two predictable temporal risk patterns for six days. “Morning risk” treatment prey were exposed to the odour of Cephalopholis cyanostigma (rockcod) paired with conspecific chemical alarm cues (simulating a rockcod present and feeding) during the morning, and rockcod odour only in the evening (simulating a rockcod present but not feeding). “Evening risk” treatment prey had the two stimuli presented to them in the opposite order. When tested individually for their response to rockcod odour alone, lemon damselfish from the morning risk treatment responded with a greater antipredator response intensity in the morning than in the evening. In contrast, those lemon damselfish previously exposed to the evening risk treatment subsequently responded with a greater antipredator response when tested in the evening. The results of this experiment demonstrate that P. moluccensis have the ability to learn temporal patterns of predation risk and can adjust their foraging patterns to match the threat posed by predators at a given time of day. Our results provide the first experimental demonstration of a mechanism by which prey in a complex, multi-predator environment can learn and respond to daily patterns of predation risk. PMID:22493699

  16. Discrimination of Speech Stimuli Based on Neuronal Response Phase Patterns Depends on Acoustics But Not Comprehension

    PubMed Central

    Poeppel, David

    2010-01-01

    Speech stimuli give rise to neural activity in the listener that can be observed as waveforms using magnetoencephalography. Although waveforms vary greatly from trial to trial due to activity unrelated to the stimulus, it has been demonstrated that spoken sentences can be discriminated based on theta-band (3–7 Hz) phase patterns in single-trial response waveforms. Furthermore, manipulations of the speech signal envelope and fine structure that reduced intelligibility were found to produce correlated reductions in discrimination performance, suggesting a relationship between theta-band phase patterns and speech comprehension. This study investigates the nature of this relationship, hypothesizing that theta-band phase patterns primarily reflect cortical processing of low-frequency (<40 Hz) modulations present in the acoustic signal and required for intelligibility, rather than processing exclusively related to comprehension (e.g., lexical, syntactic, semantic). Using stimuli that are quite similar to normal spoken sentences in terms of low-frequency modulation characteristics but are unintelligible (i.e., their time-inverted counterparts), we find that discrimination performance based on theta-band phase patterns is equal for both types of stimuli. Consistent with earlier findings, we also observe that whereas theta-band phase patterns differ across stimuli, power patterns do not. We use a simulation model of the single-trial response to spoken sentence stimuli to demonstrate that phase-locked responses to low-frequency modulations of the acoustic signal can account not only for the phase but also for the power results. The simulation offers insight into the interpretation of the empirical results with respect to phase-resetting and power-enhancement models of the evoked response. PMID:20484530

  17. A central pattern generator producing alternative outputs: temporal pattern of premotor activity.

    PubMed

    Norris, Brian J; Weaver, Adam L; Morris, Lee G; Wenning, Angela; García, Paul A; Calabrese, Ronald L

    2006-07-01

    The central pattern generator for heartbeat in medicinal leeches constitutes seven identified pairs of segmental heart interneurons. Four identified pairs of heart interneurons make a staggered pattern of inhibitory synaptic connections with segmental heart motor neurons. Using extracellular recording from multiple interneurons in the network in 56 isolated nerve cords, we show that this pattern generator produces a side-to-side asymmetric pattern of intersegmental coordination among ipsilateral premotor interneurons. This pattern corresponds to a similarly asymmetric fictive motor pattern in heart motor neurons and asymmetric constriction pattern of the two tubular hearts, synchronous and peristaltic. We provide a quantitative description of the firing pattern of all the premotor interneurons, including phase, duty cycle, and intraburst frequency of this premotor activity pattern. This analysis identifies two stereotypical coordination modes corresponding to synchronous and peristaltic, which show phase constancy over a broad range of periods as do the fictive motor pattern and the heart constriction pattern. Coordination mode is controlled through one segmental pair of heart interneurons (switch interneurons). Side-to-side switches in coordination mode are a regular feature of this pattern generator and occur with changes in activity state of these switch interneurons. Associated with synchronous coordination of premotor interneurons, the ipsilateral switch interneuron is in an active state, during which it produces rhythmic bursts, whereas associated with peristaltic coordination, the ipsilateral switch interneuron is largely silent. We argue that timing and pattern elaboration are separate functions produced by overlapping subnetworks in the heartbeat central pattern generator. PMID:16611849

  18. Patterns of temporal scaling of groundwater level fluctuation

    NASA Astrophysics Data System (ADS)

    Yu, Xue; Ghasemizadeh, Reza; Padilla, Ingrid Y.; Kaeli, David; Alshawabkeh, Akram

    2016-05-01

    We studied the fractal scaling behavior of groundwater level fluctuation for various types of aquifers in Puerto Rico using the methods of (1) detrended fluctuation analysis (DFA) to examine the monofractality and (2) wavelet transform maximum modulus (WTMM) to analyze the multifractality. The DFA results show that fractals exist in groundwater fluctuations of all the aquifers with scaling patterns that are anti-persistent (1 < β < 1.5; 1.32 ± 0.12, 18 wells) or persistent (β > 1.5; 1.62 ± 0.07, 4 wells). The multifractal analysis confirmed the need to characterize these highly complex processes with multifractality, which originated from the stochastic distribution of the irregularly-shaped fluctuations. The singularity spectra of the fluctuation processes in each well were site specific. We found a general elevational effect with smaller fractal scaling coefficients in the shallower wells, except for the Northern Karst Aquifer Upper System. High spatial variability of fractal scaling of groundwater level fluctuations in the karst aquifer is due to the coupled effects of anthropogenic perturbations, precipitation, elevation and particularly the high heterogeneous hydrogeological conditions.

  19. Spatio-temporal network analysis for studying climate patterns

    NASA Astrophysics Data System (ADS)

    Fountalis, Ilias; Bracco, Annalisa; Dovrolis, Constantine

    2014-02-01

    A fast, robust and scalable methodology to examine, quantify, and visualize climate patterns and their relationships is proposed. It is based on a set of notions, algorithms and metrics used in the study of graphs, referred to as complex network analysis. The goals of this approach are to explain known climate phenomena in terms of an underlying network structure and to uncover regional and global linkages in the climate system, while comparing general circulation models outputs with observations. The proposed method is based on a two-layer network representation. At the first layer, gridded climate data are used to identify "areas", i.e., geographical regions that are highly homogeneous in terms of the given climate variable. At the second layer, the identified areas are interconnected with links of varying strength, forming a global climate network. This paper describes the climate network inference and related network metrics, and compares network properties for different sea surface temperature reanalyses and precipitation data sets, and for a small sample of CMIP5 outputs.

  20. A smart pattern recognition system for the automatic identification of aerospace acoustic sources

    NASA Technical Reports Server (NTRS)

    Cabell, R. H.; Fuller, C. R.

    1989-01-01

    An intelligent air-noise recognition system is described that uses pattern recognition techniques to distinguish noise signatures of five different types of acoustic sources, including jet planes, propeller planes, a helicopter, train, and wind turbine. Information for classification is calculated using the power spectral density and autocorrelation taken from the output of a single microphone. Using this system, as many as 90 percent of test recordings were correctly identified, indicating that the linear discriminant functions developed can be used for aerospace source identification.

  1. Detecting spatial and temporal patterns of aboveground production in a tallgrass prairie using remotely sensed data

    SciTech Connect

    Su, Haiping; Krummel, J.R.; Briggs, J.M.; Knapp, A.K.; Blair, J.M.

    1996-05-01

    Spatial and temporal patterns of aboveground production is a tallgrass prairie ecosystem constitute one of the important spatial components associated with ecological processes and biophysical resources (e.g. water and nutrients). This study addresses the effects of disturbance, topography, and climate on the spatial and temporal patterns of North American tallgrass prairie at a landscape level by using high resolution satellite data. Spatial heterogeneity derived from the satellite data was related to the impacts of the disturbance of fire and grazing, topographical gradient, and amount of precipitation during the growing season. The result suggests that ecological processes and biophysical resources can be quantified with high resolution satellite data for tallgrass prairie management.

  2. Skeletal mineralogy of bryozoans: Taxonomic and temporal patterns

    NASA Astrophysics Data System (ADS)

    Smith, Abigail M.; Key, Marcus M., Jr.; Gordon, Dennis P.

    2006-10-01

    Skeletal carbonate mineralogy of 1183 specimens of marine bryozoans from the literature was examined for phylogenetic patterns in order to elucidate the effects of bryozoan mineralogy on geochemical and paleoenvironmental analysis. Colonies are composed of calcite (66% of specimens), aragonite (17% of specimens) or various mixtures of the two (17% specimens) (phylum mean = 72.9 wt.% calcite, n = 1051). When calcite is present, it ranges from 0.0 to 13.7 wt.% MgCO 3 (mean = 5.0 wt.% MgCO 3, n = 873). Most (61%) calcitic specimens are formed of intermediate-Mg calcite (4 to 8 wt.% MgCO 3), others (28%) of low-Mg calcite (0 to 4 wt.% MgCO 3), and few of high-Mg calcite (> 8 wt.% MgCO 3). The phylum occupies at least 63% of the theoretical mineralogical "space" available to biomineralisation. Most of this variation occurs in the class Gymnolaemata, order Cheilostomata, suborder Neocheilostomata. Fossil and Recent stenolaemate taxa are generally low- to intermediate-Mg calcite (mean = 99.7 wt.% calcite, 2.6 wt.% MgCO 3, 17% of available biomineral space). Variability among families is related in a general way to first appearance datum: families younger than 100 Ma display greater mineralogical complexity than older ones. The cheilostome infraorder Flustrina includes unusual free-living aragonitic families, dual-calcite skeletons (mainly low-Mg calcite, but with secondary high-Mg calcite), and some genera with considerable mineralogical variability. Families (e.g., Membraniporidae and Phidoloporidae) and species (e.g., Schizoporella unicornis) with the highest degree of variability have potential for environmental correlations with mineralogy, paleoenvironmental interpretation, and possibly molecular investigation for potential cryptic species. Stenolaemate families, genera and species with low variability, on the other hand, are well-suited for geochemical work such as stable isotope analysis. Variability in the skeletal mineralogy of bryozoans suggests that they may be

  3. Pattern-histogram-based temporal change detection using personal chest radiographs

    NASA Astrophysics Data System (ADS)

    Ugurlu, Yucel; Obi, Takashi; Hasegawa, Akira; Yamaguchi, Masahiro; Ohyama, Nagaaki

    1999-05-01

    An accurate and reliable detection of temporal changes from a pair of images has considerable interest in the medical science. Traditional registration and subtraction techniques can be applied to extract temporal differences when,the object is rigid or corresponding points are obvious. However, in radiological imaging, loss of the depth information, the elasticity of object, the absence of clearly defined landmarks and three-dimensional positioning differences constraint the performance of conventional registration techniques. In this paper, we propose a new method in order to detect interval changes accurately without using an image registration technique. The method is based on construction of so-called pattern histogram and comparison procedure. The pattern histogram is a graphic representation of the frequency counts of all allowable patterns in the multi-dimensional pattern vector space. K-means algorithm is employed to partition pattern vector space successively. Any differences in the pattern histograms imply that different patterns are involved in the scenes. In our experiment, a pair of chest radiographs of pneumoconiosis is employed and the changing histogram bins are visualized on both of the images. We found that the method can be used as an alternative way of temporal change detection, particularly when the precise image registration is not available.

  4. Temporal Patterns in Fine Particulate Matter Time Series in Beijing: A Calendar View

    PubMed Central

    Liu, Jianzheng; Li, Jie; Li, Weifeng

    2016-01-01

    Extremely high fine particulate matter (PM2.5) concentration has become synonymous to Beijing, the capital of China, posing critical challenges to its sustainable development and leading to major public health concerns. In order to formulate mitigation measures and policies, knowledge on PM2.5 variation patterns should be obtained. While previous studies are limited either because of availability of data, or because of problematic a priori assumptions that PM2.5 concentration follows subjective seasonal, monthly, or weekly patterns, our study aims to reveal the data on a daily basis through visualization rather than imposing subjective periodic patterns upon the data. To achieve this, we conduct two time-series cluster analyses on full-year PM2.5 data in Beijing in 2014, and provide an innovative calendar visualization of PM2.5 measurements throughout the year. Insights from the analysis on temporal variation of PM2.5 concentration show that there are three diurnal patterns and no weekly patterns; seasonal patterns exist but they do not follow a strict temporal division. These findings advance current understanding on temporal patterns in PM2.5 data and offer a different perspective which can help with policy formulation on PM2.5 mitigation. PMID:27561629

  5. Temporal Patterns in Fine Particulate Matter Time Series in Beijing: A Calendar View.

    PubMed

    Liu, Jianzheng; Li, Jie; Li, Weifeng

    2016-01-01

    Extremely high fine particulate matter (PM2.5) concentration has become synonymous to Beijing, the capital of China, posing critical challenges to its sustainable development and leading to major public health concerns. In order to formulate mitigation measures and policies, knowledge on PM2.5 variation patterns should be obtained. While previous studies are limited either because of availability of data, or because of problematic a priori assumptions that PM2.5 concentration follows subjective seasonal, monthly, or weekly patterns, our study aims to reveal the data on a daily basis through visualization rather than imposing subjective periodic patterns upon the data. To achieve this, we conduct two time-series cluster analyses on full-year PM2.5 data in Beijing in 2014, and provide an innovative calendar visualization of PM2.5 measurements throughout the year. Insights from the analysis on temporal variation of PM2.5 concentration show that there are three diurnal patterns and no weekly patterns; seasonal patterns exist but they do not follow a strict temporal division. These findings advance current understanding on temporal patterns in PM2.5 data and offer a different perspective which can help with policy formulation on PM2.5 mitigation. PMID:27561629

  6. Characterizing spatial and temporal patterns of intermittent rivers

    NASA Astrophysics Data System (ADS)

    de Vries, Stefan B.; Hoeve, Jasper; Sauquet, Eric; Leigh, Catherine; Bonada, Núria; Fike, Kimberly; Dahm, Clifford; Booij, Martijn J.; Datry, Thibault

    2015-04-01

    the monitoring strategy, i.e. gauging stations have been primarily installed to measure perennial flows of medium size basins and most of the IRs remain ungauged. This is also true in the US where ~ 7% of the current and historical gage network is on intermittent rivers. - Intermittence of rivers demonstrates high seasonality which varies from one country to another. - Links between climate variability and intermittence are not straightforward. No relation was found between annual DUR and annual precipitation in France whereas DUR was significantly correlated with precipitation in Australia. Potential evapotranspiration was correlated with DUR for France, but not for Australia, where the results were more obscure. - No spatially coherent trends in flow intermittence were identified in Spain, France or the USA. Significant trends according to the Mann Kendall test were found in Australia and results suggest trends in yearly DUR consistent with observed changes in rainfall in Western Australia during the last few decades. The El Nino cycle is one of the possible sources of variability in intermittency patterns.

  7. Time Curves: Folding Time to Visualize Patterns of Temporal Evolution in Data.

    PubMed

    Bach, Benjamin; Shi, Conglei; Heulot, Nicolas; Madhyastha, Tara; Grabowski, Tom; Dragicevic, Pierre

    2016-01-01

    We introduce time curves as a general approach for visualizing patterns of evolution in temporal data. Examples of such patterns include slow and regular progressions, large sudden changes, and reversals to previous states. These patterns can be of interest in a range of domains, such as collaborative document editing, dynamic network analysis, and video analysis. Time curves employ the metaphor of folding a timeline visualization into itself so as to bring similar time points close to each other. This metaphor can be applied to any dataset where a similarity metric between temporal snapshots can be defined, thus it is largely datatype-agnostic. We illustrate how time curves can visually reveal informative patterns in a range of different datasets. PMID:26529718

  8. Spatio-temporal expression patterns of anterior Hox genes during Nile tilapia (Oreochromis niloticus) embryonic development.

    PubMed

    Lyon, R Stewart; Davis, Adam; Scemama, Jean-Luc

    2013-01-01

    Hox genes encode transcription factors that function to pattern regional tissue identities along the anterior-posterior axis during animal embryonic development. Divergent nested Hox gene expression patterns within the posterior pharyngeal arches may play an important role in patterning morphological variation in the pharyngeal jaw apparatus (PJA) between evolutionarily divergent teleost fishes. Recent gene expression studies have shown the expression patterns from all Hox paralog group (PG) 2-6 genes in the posterior pharyngeal arches (PAs) for the Japanese medaka (Oryzias latipes) and from most genes of these PGs for the Nile tilapia (Oreochromis niloticus). While several orthologous Hox genes exhibit divergent spatial and temporal expression patterns between these two teleost species in the posterior PAs, several tilapia Hox gene expression patterns from PG3-6 must be documented for a full comparative study. Here we present the spatio-temporal expression patterns of hoxb3b, c3a, b4a, a5a, b5a, b5b, b6a and b6b in the neural tube and posterior PAs of the Nile tilapia. We show that several of these tilapia Hox genes exhibit divergent expression patterns in the posterior PAs from their medaka orthologs. We also compare these gene expression patterns to orthologs in other gnathostome vertebrates, including the dogfish shark. PMID:23376031

  9. Audiologic Patterns of Otic Capsule Preserving Temporal Bone Fracture: Effects of the Affected Subsites

    PubMed Central

    Kim, So Young; Kim, Yoon Joong; Kim, Young Ho; Park, Min-Hyun

    2016-01-01

    Objectives. This study was aimed to assess the relationship between the type of temporal bone area involved and conductive hearing loss. Methods. We enrolled 97 patients who visited the otolaryngology clinics of Seoul National University Hospital or Boramae Medical Center, Seoul Metropolitan Government-Seoul National University with temporal bone fracture between January 2004 and January 2014. Audiometric parameters, including initial and improved air-bone (AB) conduction gap values, were reviewed in accordance with the temporal bone computed tomography (external auditory canal [EAC], middle ear [ME], mastoid [M], and ossicle [O]). Results. Patients with ossicular chain involvement exhibited a larger AB gap compared to those with no ossicular chain involvement at 250, 1,000, 2,000, and 4,000 Hz. Among the groups without ossicular chain involvement, the initial AB gap was largest in patients with EAC+ME+M involvement, followed by the ME+M and M-only involvement groups. The greatest improvement in the AB gap was observed in the EAC+ME+M group followed by the ME+M and M-only groups, irrespective of ossicular chain involvement. Improvements in AB gap values were smallest at 2,000 Hz. Conclusion. Conductive hearing loss pattern differed according to the temporal bone area involved. Therefore, areas such as the hematoma and hemotympanum, as well as the fracture line of the temporal bone area, must be evaluated to predict audiologic patterns with otic capsule preserving temporal bone fracture. PMID:27337953

  10. Temporal variability and stability in infant-directed sung speech: evidence for language-specific patterns.

    PubMed

    Falk, Simone

    2011-06-01

    In this paper, sung speech is used as a methodological tool to explore temporal variability in the timing of word-internal consonants and vowels. It is hypothesized that temporal variability/stability becomes clearer under the varying rhythmical conditions induced by song.This is explored crosslinguistically in German - a language that exhibits a potential vocalic quantity distinction - and the non-quantity languages French and Russian. Songs by non-professional singers, i.e. parents that sang to their infants aged 2 to 13 months in a non-laboratory setting, were recorded and analyzed.Vowel and consonant durations at syllable contacts of trochaic word types with CVCV or CV:CV structure were measured under varying rhythmical conditions. Evidence is provided that in German non-professional singing, the two syllable structures can be differentiated by two distinct temporal variability patterns: vocalic variability (and consonantal stability) was found to be dominant in CV:CV structures whereas consonantal variability (and vocalic stability) was characteristic for CVCV structures. In French and Russian, however, only vocalic variability seemed to apply.Additionally, findings suggest that the different temporal patterns found in German were also supported by the stability pattern at the tonal level. These results point to subtle (supra) segmental timing mechanisms in sung speech that affect temporal targets according to the specific prosodic nature of the language in question. PMID:21848078

  11. Function-Based Discovery of Significant Transcriptional Temporal Patterns in Insulin Stimulated Muscle Cells

    PubMed Central

    Di Camillo, Barbara; Irving, Brian A.; Schimke, Jill; Sanavia, Tiziana; Toffolo, Gianna; Cobelli, Claudio; Nair, K. Sreekumaran

    2012-01-01

    Background Insulin action on protein synthesis (translation of transcripts) and post-translational modifications, especially of those involving the reversible modifications such as phosphorylation of various signaling proteins, are extensively studied but insulin effect on transcription of genes, especially of transcriptional temporal patterns remains to be fully defined. Methodology/Principal Findings To identify significant transcriptional temporal patterns we utilized primary differentiated rat skeletal muscle myotubes which were treated with insulin and samples were collected every 20 min for 8 hours. Pooled samples at every hour were analyzed by gene array approach to measure transcript levels. The patterns of transcript levels were analyzed based on a novel method that integrates selection, clustering, and functional annotation to find the main temporal patterns associated to functional groups of differentially expressed genes. 326 genes were found to be differentially expressed in response to in vitro insulin administration in skeletal muscle myotubes. Approximately 20% of the genes that were differentially expressed were identified as belonging to the insulin signaling pathway. Characteristic transcriptional temporal patterns include: (a) a slow and gradual decrease in gene expression, (b) a gradual increase in gene expression reaching a peak at about 5 hours and then reaching a plateau or an initial decrease and other different variable pattern of increase in gene expression over time. Conclusion/Significance The new method allows identifying characteristic dynamic responses to insulin stimulus, common to a number of genes and associated to the same functional group. The results demonstrate that insulin treatment elicited different clusters of gene transcript profile supporting a temporal regulation of gene expression by insulin in skeletal muscle cells. PMID:22396763

  12. Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography using Surface Acoustic Waves

    PubMed Central

    Guo, Feng; Zhou, Weijie; Li, Peng; Mao, Zhangming; Yennawar, Neela; French, Jarrod B.; Jun Huang, Tony

    2015-01-01

    Advances in modern X-ray sources and detector technology have made it possible for crystallographers to collect usable data on crystals of only a few micrometers or less in size. Despite these developments, sample handling techniques have significantly lagged behind and often prevent the full realization of current beamline capabilities. In order to address this shortcoming we have developed a surface acoustic wave-based method for manipulating and patterning crystals. This method, which does not damage the fragile protein crystals, can precisely manipulate and pattern micrometer and sub-micrometer sized crystals for data collection and screening. The technique is robust, inexpensive, and easy to implement. This method not only promises to significantly increase efficiency and throughput of both conventional and serial crystallography experiments, but also will make it possible to collect data on samples that were previously intractable. PMID:25641793

  13. Problems Associated with Statistical Pattern Recognition of Acoustic Emission Signals in a Compact Tension Fatigue Specimen

    NASA Technical Reports Server (NTRS)

    Hinton, Yolanda L.

    1999-01-01

    Acoustic emission (AE) data were acquired during fatigue testing of an aluminum 2024-T4 compact tension specimen using a commercially available AE system. AE signals from crack extension were identified and separated from noise spikes, signals that reflected from the specimen edges, and signals that saturated the instrumentation. A commercially available software package was used to train a statistical pattern recognition system to classify the signals. The software trained a network to recognize signals with a 91-percent accuracy when compared with the researcher's interpretation of the data. Reasons for the discrepancies are examined and it is postulated that additional preprocessing of the AE data to focus on the extensional wave mode and eliminate other effects before training the pattern recognition system will result in increased accuracy.

  14. On acoustic emission for failure investigation in CFRP: Pattern recognition and peak frequency analyses

    NASA Astrophysics Data System (ADS)

    Gutkin, R.; Green, C. J.; Vangrattanachai, S.; Pinho, S. T.; Robinson, P.; Curtis, P. T.

    2011-05-01

    This paper investigates failure in Carbon Fibre Reinforced Plastics CFRP using Acoustic Emission (AE). Signals have been collected and post-processed for various test configurations: tension, Compact Tension (CT), Compact Compression (CC), Double Cantilever Beam (DCB) and four-point bend End Notched Flexure (4-ENF). The signals are analysed with three different pattern recognition algorithms: k-means, Self Organising Map (SOM) combined with k-means and Competitive Neural Network (CNN). The SOM combined with k-means appears as the most effective of the three algorithms. The results from the clustering analysis follow patterns found in the peak frequencies distribution. A detailed study of the frequency content of each test is then performed and the classification of several failure modes is achieved.

  15. Temporal variability of vertical nontidal circulation pattern in a partially mixed estuary: Comparison of self-organizing map and empirical orthogonal functions

    NASA Astrophysics Data System (ADS)

    Cheng, Peng; Wilson, Robert E.

    2006-12-01

    On the basis of a 233-day moored acoustic Doppler current profiler data set in an estuarine strait, temporal variability of vertical estuarine circulation is examined using self-organizing map (SOM) and empirical orthogonal functions (EOF). The SOM identifies a continuum of patterns of which eight have been selected. The best matching unit (BMU) time series shows distinct seasonal variation which separates the data set into three seasonal segments. Also, monthly variation can be discerned by BMU sequences, and the data set is further separated into seven monthly segments. The EOF analysis of the whole record identifies only four patterns which are contained in the SOM patterns. However, EOF analysis of the seven monthly segments shows distinct monthly variation of the first two EOF modes. Moreover, those EOF modes are compatible with the SOM patterns showing consistency between the two techniques. The synoptic variability is described by four selected events which correspond to particular BMU sequences and represent filling and draining processes. The pattern-forcing relationships are explored with EOF principle components. Long-term variations of circulation patterns are dominated by river discharge and winds. Short-term variations explored within seasonal and monthly segments indicate that the flow patterns are results of combined effect of forcing. Officer's (1976) analytical solutions of estuarine circulation are applied, and the results support the flow patterns and pattern-forcing relationship revealed by SOM and EOF analysis.

  16. TOOLS FOR PRESENTING SPATIAL AND TEMPORAL PATTERNS OF ENVIRONMENTAL MONITORING DATA

    EPA Science Inventory

    The EPA Health Effects Research Laboratory has developed this data presentation tool for use with a variety of types of data which may contain spatial and temporal patterns of interest. he technology links mainframe computing power to the new generation of "desktop publishing" ha...

  17. TEMPORAL AND SPATIAL PATTERNS OF METHANE EMISSIONS FROM A RESERVOIR DRAINING AN AGRICULTURAL WATERSHED

    EPA Science Inventory

    We used multiple approaches to characterize temporal and spatial patterns in methane (CH4) emissions from a mid-latitude reservoir (William H. Harsha Lake, Ohio, USA) draining an agricultural watershed. Weekly to monthly monitoring at six sites in the reservoir during a 13 month...

  18. TEMPORAL AND SPATIAL PATTERNS OF METHANE EMISSIONS FROM A RESERVOIR DRAINING AN AGRICULTURAL WATERSHED (abstract)

    EPA Science Inventory

    We used multiple approaches to characterize temporal and spatial patterns in methane (CH4) emissions from a mid-latitude reservoir (William H. Harsha Lake, Ohio, USA) draining an agricultural watershed. Weekly to monthly monitoring at six sites in the reservoir during a 13 month...

  19. Fourier-transform method of data compression and temporal fringe pattern analysis

    SciTech Connect

    Tuck Wah Ng; Kar Tien Ang

    2005-11-20

    Temporal fringe pattern analysis is invaluable in studies of transient phenomena but necessitates large data storage for two essential sets of data, i.e., fringe pattern intensity and deformation phase. We describe a compression scheme based on the Fourier-transform method for temporal fringe data storage that permits retrieval of both the intensity and the deformation phase. When the scheme was used with simulated temporal wavefront interferometry intensity fringe patterns, a high compression ratio of 10.77 was achieved, with a significant useful data ratio of 0.859. The average root-mean-square error in phase value restored was a low 0.0015 rad. With simulated temporal speckle interferometry intensity fringe patterns, the important paremeters varied with the modulation cutoff value applied. For a zero modulation cutoff value, the ratio of data points and the compression ratio values obtained were roughly the same as in wavelength interferometry, albeit the average root-mean-square error in the phase value restored was far higher. By increasing the modulation cutoff value we attained significant reduction and increase in the ratio of data points and the compression ratio, respectively, whereas the average root-mean-square error in the restored phase values was reduced only slightly.

  20. Analyzing Temporal Patterns of Knowledge Construction in a Role-Based Online Discussion

    ERIC Educational Resources Information Center

    Wise, Alyssa Friend; Chiu, Ming Ming

    2011-01-01

    This paper introduces an approach to analyzing temporal patterns of knowledge construction (KC) in online discussions, including consequences of role assignments. The paper illustrates the power of this approach for illuminating collaborative processes using data from a semester-long series of discussions in which 21 university students were…

  1. Spectral and temporal response patterns of single units in the chinchilla dorsal cochlear nucleus.

    PubMed

    Kaltenbach, J A; Saunders, J C

    1987-05-01

    Spectral and temporal response patterns to pure-tone stimuli were collected from single units in the dorsal cochlear nucleus of anesthetized chinchillas. The spectral response profiles were divisible into groups based on the balance of excitation and inhibition. Temporal responses were characterized in chloralose-anesthetized animals by collecting PST-histograms. There appeared to be no simple one-to-one relationship between a unit's spectral and its temporal response pattern. Excitatory spectral responses were generally sharply tuned areas resembling those of auditory nerve fibers. However, unlike the latter, the majority of these had chopper or pauser/buildup temporal responses. Inhibitory spectral responses were of two distinct types: one included lateral inhibitory areas flanking the tuned excitatory areas which occasionally invaded the latter creating a nonmonotonic excitatory response at the unit's characteristic frequency. The other included sharply tuned inhibitory areas. The characteristic frequencies of these units were found to be in close correspondence with those of sharply tuned excitatory units from the same penetration suggesting that these inhibitory units were tonotopically mapped in the same register as tuned excitatory units. The spectral response patterns were studied with three types of anesthesia: ketamine/xylazine, dial/urethane, and chloralose. In each of these groups the patterns were similar. However, the proportions of units showing inhibition was strongly dependent on the choice of anesthetic agent with chloralose yielding the highest proportions (59%) and ketamine/xylazine yielding the lowest (29%). PMID:3569464

  2. Discrimination of acoustic patterns in rats using the water T-maze

    PubMed Central

    de la Mora, Daniela M.; Toro, Juan M.

    2014-01-01

    The extraction of abstract rules and their generalization to new items has been proposed to be at the heart of higher cognitive functions such as language. Research with animals has shown that various species can extract rather complex patterns from the input, as well as establish abstract same/different relations. However, much of these findings have been observed after extensive training procedures. Here, we tested rats’ capacity to discriminate and generalize tone triplets that entailed a repetition from triplets that followed an ordinal, non-repeating pattern following a relatively short discrimination training procedure in a water T-maze. Our findings demonstrate that, under this procedure and after only 12 sessions, rats can learn to discriminate both patterns when a reliable difference in pitch variations is present across them (Experiment 1). When differences in pitch are eliminated (Experiment 2), no discrimination between patterns is found. Results suggest a procedure based on a water T-maze might be used to explore discrimination of acoustic patterns in rodents. PMID:25729120

  3. Assessment of temporal state-dependent interactions between auditory fMRI responses to desired and undesired acoustic sources.

    PubMed

    Olulade, O; Hu, S; Gonzalez-Castillo, J; Tamer, G G; Luh, W-M; Ulmer, J L; Talavage, T M

    2011-07-01

    A confounding factor in auditory functional magnetic resonance imaging (fMRI) experiments is the presence of the acoustic noise inherently associated with the echo planar imaging acquisition technique. Previous studies have demonstrated that this noise can induce unwanted neuronal responses that can mask stimulus-induced responses. Similarly, activation accumulated over multiple stimuli has been demonstrated to elevate the baseline, thus reducing the dynamic range available for subsequent responses. To best evaluate responses to auditory stimuli, it is necessary to account for the presence of all recent acoustic stimulation, beginning with an understanding of the attenuating effects brought about by interaction between and among induced unwanted neuronal responses, and responses to desired auditory stimuli. This study focuses on the characterization of the duration of this temporal memory and qualitative assessment of the associated response attenuation. Two experimental parameters--inter-stimulus interval (ISI) and repetition time (TR)--were varied during an fMRI experiment in which participants were asked to passively attend to an auditory stimulus. Results present evidence of a state-dependent interaction between induced responses. As expected, attenuating effects of these interactions become less significant as TR and ISI increase and in contrast to previous work, persist up to 18s after a stimulus presentation. PMID:21426929

  4. Acoustic Cluster Therapy: In Vitro and Ex Vivo Measurement of Activated Bubble Size Distribution and Temporal Dynamics.

    PubMed

    Healey, Andrew John; Sontum, Per Christian; Kvåle, Svein; Eriksen, Morten; Bendiksen, Ragnar; Tornes, Audun; Østensen, Jonny

    2016-05-01

    Acoustic cluster technology (ACT) is a two-component, microparticle formulation platform being developed for ultrasound-mediated drug delivery. Sonazoid microbubbles, which have a negative surface charge, are mixed with micron-sized perfluoromethylcyclopentane droplets stabilized with a positively charged surface membrane to form microbubble/microdroplet clusters. On exposure to ultrasound, the oil undergoes a phase change to the gaseous state, generating 20- to 40-μm ACT bubbles. An acoustic transmission technique is used to measure absorption and velocity dispersion of the ACT bubbles. An inversion technique computes bubble size population with temporal resolution of seconds. Bubble populations are measured both in vitro and in vivo after activation within the cardiac chambers of a dog model, with catheter-based flow through an extracorporeal measurement flow chamber. Volume-weighted mean diameter in arterial blood after activation in the left ventricle was 22 μm, with no bubbles >44 μm in diameter. After intravenous administration, 24.4% of the oil is activated in the cardiac chambers. PMID:26831341

  5. Temporal pattern of incorporation of /sup 3/H precursors into pituitary glycoproteins and their subsequent release

    SciTech Connect

    Grotjan, H.E. Jr.

    1982-04-01

    The temporal pattern of incorporation of various /sup 3/H precursors into glycoproteins by rat anterior pituitaries incubated in vitro and the release of /sup 3/H-glycoproteins was examined. (/sup 3/H)Leucine incorporation was linear with respect to time and (/sup 3/H)leucine-containing macromolecules appeared in the media in about 1 hr. The temporal pattern of (/sup 3/H)mannose incorporation and release was similar. (/sup 3/H)Galactose and (/sup 3/H)fucose were incorporated after apparent time of delays of approximately 15 min and soon thereafter (20-25 min) appeared in the medium in /sup 3/H-glycoproteins. Thus, these precursors appear to be added as terminal residues. (/sup 3/H)Glucosamine exhibited a pattern intermediate between (/sup 3/H)leucine and (/sup 3/H)fucose whereas (/sup 3/H)GlcNAc appeared to be incorporated as a terminal residue.

  6. Temporal feeding pattern may influence reproduction efficiency, the example of breeding mares.

    PubMed

    Benhajali, Haifa; Ezzaouia, Mohammed; Lunel, Christophe; Charfi, Faouzia; Hausberger, Martine

    2013-01-01

    Discomfort in farm animals may be induced by inappropriate types or timing of food supplies. Thus, time restriction of meals and lack of roughage have been shown to be one source of emergence of oral stereotypies and abnormal behaviour in horses which have evolved to eat high-fibre diets in small amounts over long periods of time. This feeding pattern is often altered in domestic environment where horses are often fed low fibre meals that can be rapidly consumed. This study aimed at determining the effect of the temporal pattern of feeding on reproductive efficiency of breeding mares, One hundred Arab breeding mares were divided into two groups that differed only in the temporal pattern of roughage availability: only at night for the standard feeding pattern group (SFP mares), night and day for the "continuous feeding" group (CF mares). The total amount of roughage provided was the same as the CF mares received half of the hay during the day while in paddock (haynets). Mares were tested for oestrus detection by teasing with one stallion and were then examined clinically by rectal palpations and ultrasound before being mated naturally or inseminated by fresh or frozen semen. Multivariate logistic regression was used to analyse data. The treatment affected significantly the reproductive efficiency of the mares with fewer oestrus abnormalities (p = 0.0002) and more fertility (p = 0.024) in CF mares (conception rate = 81% versus 55% in SFP mares). Ensuring semi-continous feeding by providing roughage may be a way of fulfilling the basic physiological needs of the horses' digestive system, reducing stress and associated inhibitors of reproduction. To our knowledge, this study provides the first evidence of an impact of temporal feeding patterns on reproductive success in a Mammal. Temporal patterns of feeding may be a major and underestimated factor in breeding. PMID:24098636

  7. Temporal Feeding Pattern May Influence Reproduction Efficiency, the Example of Breeding Mares

    PubMed Central

    Benhajali, Haifa; Ezzaouia, Mohammed; Lunel, Christophe; Charfi, Faouzia; Hausberger, Martine

    2013-01-01

    Discomfort in farm animals may be induced by inappropriate types or timing of food supplies. Thus, time restriction of meals and lack of roughage have been shown to be one source of emergence of oral stereotypies and abnormal behaviour in horses which have evolved to eat high-fibre diets in small amounts over long periods of time. This feeding pattern is often altered in domestic environment where horses are often fed low fibre meals that can be rapidly consumed. This study aimed at determining the effect of the temporal pattern of feeding on reproductive efficiency of breeding mares, One hundred Arab breeding mares were divided into two groups that differed only in the temporal pattern of roughage availability: only at night for the standard feeding pattern group (SFP mares), night and day for the “continuous feeding” group (CF mares). The total amount of roughage provided was the same as the CF mares received half of the hay during the day while in paddock (haynets). Mares were tested for oestrus detection by teasing with one stallion and were then examined clinically by rectal palpations and ultrasound before being mated naturally or inseminated by fresh or frozen semen. Multivariate logistic regression was used to analyse data. The treatment affected significantly the reproductive efficiency of the mares with fewer oestrus abnormalities (p = 0.0002) and more fertility (p = 0.024) in CF mares (conception rate = 81% versus 55% in SFP mares). Ensuring semi-continous feeding by providing roughage may be a way of fulfilling the basic physiological needs of the horses' digestive system, reducing stress and associated inhibitors of reproduction. To our knowledge, this study provides the first evidence of an impact of temporal feeding patterns on reproductive success in a Mammal. Temporal patterns of feeding may be a major and underestimated factor in breeding. PMID:24098636

  8. Temporal and Spatial Patterns of Habitat Use by Juveniles of a Small Coastal Shark (Mustelus lenticulatus) in an Estuarine Nursery

    PubMed Central

    Francis, Malcolm P.

    2013-01-01

    Juvenile rig (Mustelus lenticulatus) were internally tagged with acoustic transmitters and tracked with acoustic receivers deployed throughout two arms of Porirua Harbour, a small (7 km2) estuary in New Zealand. Ten rig were tracked for up to four months during summer–autumn to determine their spatial and temporal use of the habitat. The overall goal was to estimate the size of Marine Protected Areas required to protect rig nursery areas from direct human impacts. Rig showed clear site preferences, but those preferences varied among rig and over time. They spent most of their time in large basins and on shallow sand and mud flats around the margins, and avoided deep channels. Habitat range increased during autumn for many of the rig. Only one shark spent time in both harbour arms, indicating that there was little movement between the two. Rig home ranges were 2–7 km2, suggesting that an effective MPA would need to cover the entire Porirua Harbour. They moved to outer harbour sites following some high river flow rates, and most left the harbour permanently during or soon after a river spike, suggesting that they were avoiding low salinity water. Rig showed strong diel movements during summer, although the diel pattern weakened in autumn. Persistent use of the same day and night sites indicates that diel movements are directed rather than random. Further research is required to determine the sizes of rig home ranges in larger harbours where nursery habitat is more extensive. Marine Protected Areas do not control land-based impacts such as accelerated sedimentation and heavy metal pollution, so integration of marine and terrestrial management tools across a range of government agencies is essential to fully protect nursery areas. PMID:23437298

  9. The timing and temporal patterns of eye blinking are dynamically modulated by attention.

    PubMed

    Oh, Jihoon; Jeong, So-Yeong; Jeong, Jaeseung

    2012-12-01

    A number of human behaviors and movements show self-similar temporal patterns in their occurrence over time. Human walking, finger tapping and heartbeat intervals have fluctuations that are statistically similar at multiple time scales. However, whether eye blinking, which is a unique human behavior that occurs spontaneously, embeds a similar temporal structure within other types of movements is largely unknown. In this study, we used attention-requiring tasks to assess how the temporal pattern of eye blinking is altered in both the second and sub-second time scales. Our results showed that eyeblink activity was more suppressed as the task difficulty level increased and was facilitated immediately after exposure to auditory stimuli, which were presented for 6 to 14s. Moreover, similar transient suppressive and facilitative patterns were observed in the response period, which lasted for less than one second. Furthermore, we found that spontaneous eye blinking intervals fluctuated according to an 1/f scaling property, which is widely observed in various human movements. These results suggest that the dynamics of eye blinking under specific cognitive tasks exhibit a similar temporal structure at multiple time scales. PMID:22877514

  10. Effects of temporal envelope modulation on acoustic signal recognition in a vocal fish, the plainfin midshipman.

    PubMed

    McKibben, J R; Bass, A H

    2001-06-01

    Amplitude modulation is an important parameter defining vertebrate acoustic communication signals. Nesting male plainfin midshipman fish, Porichthys notatus, emit simple, long duration hums in which modulation is strikingly absent. Envelope modulation is, however, introduced when the hums of adjacent males overlap to produce acoustic beats. Hums attract gravid females and can be mimicked with continuous tones at the fundamental frequency. While individual hums have flat envelopes, other midshipman signals are amplitude modulated. This study used one-choice playback tests with gravid females to examine the role of envelope modulation in hum recognition. Various pulse train and two-tone beat stimuli resembling natural communication signals were presented individually, and the responses compared to those for continuous pure tones. The effectiveness of pulse trains was graded and depended upon both pulse duration and the ratio of pulse to gap length. Midshipman were sensitive to beat modulations from 0.5 to 10 Hz, with fewer fish approaching the beat than the pure tone. Reducing the degree of modulation increased the effectiveness of beat stimuli. Hence, the lack of modulation in the midshipman's advertisement call corresponds to the importance of envelope modulation for the categorization of communication signals even in this relatively simple system. PMID:11425135

  11. Different Temporal Patterns of Specific and General Autobiographical Memories across the Lifespan in Alzheimer's Disease

    PubMed Central

    Philippi, Nathalie; Rousseau, François; Noblet, Vincent; Botzung, Anne; Després, Olivier; Cretin, Benjamin; Kremer, Stéphane; Blanc, Frédéric; Manning, Liliann

    2015-01-01

    We compared specific (i.e., associated with a unique time and space) and general (i.e., extended or repeated events) autobiographical memories (AbM) in Alzheimer's disease (AD). The comparison aims at investigating the relationship between these two components of AbM across the lifespan and the volume of cerebral regions of interest within the temporal lobe. We hypothesized that the ability to elicit specific memories would correlate with hippocampal volume, whereas evoking general memories would be related to lateral temporal lobe. AbM was assessed using the modified Crovitz test in 18 patients with early AD and 18 matched controls. The proportions of total memories—supposed to reflect the ability to produce general memories—and specific memories retrieved were compared between AD patients and controls. Correlations to MRI volumes of temporal cortex were tested. We found different temporal patterns for specific and general memories in AD patients, with (i) relatively spared general memories, according to a temporal gradient that preserved remote memories, predominantly associated with right lateral temporal cortex volume. (ii) Conversely, the retrieval of specific AbMs was impaired for all life periods and correlated with bilateral hippocampal volumes. Our results highlight a shift from an initially episodic to a semantic nature of AbMs during AD, where the abstracted form of memories remains. PMID:26175549

  12. A Comparison of Temporal Patterns of Fatigue in Patients on Hemodialysis

    PubMed Central

    Horigan, Ann E.; Barroso, Julie V.

    2016-01-01

    This qualitative study describes the temporal patterns of fatigue found as part of a larger study designed to elicit a description of the experience and self-management of fatigue for patients on hemodialysis. Two patterns of fatigue were identified. The first pattern, continuous fatigue, was characterized by participants who experienced fatigue at all times, which was their normal, baseline feeling. Within this group, two subgroups were identified. The second pattern of fatigue, post-dialysis fatigue only, was characterized by participants who experienced fatigue only after their hemodialysis session. This study is unique because it expands our knowledge about hemodialysis and fatigue by describing the patterns that fatigue follows over time from one hemodialysis session to the next. Insight into these phenomena could help ameliorate fatigue and allow nurses to tailor interventions for patients on hemodialysis. PMID:27254968

  13. A Comparison of Temporal Patterns of Fatigue in Patients on Hemodialysis.

    PubMed

    Horigan, Ann E; Barroso, Julie V

    2016-01-01

    This qualitative study describes the temporal patterns of fatigue found as part of a larger study designed to elicit a description of the experience and self-management of fatigue for patients on hemodialysis. Two patterns of fatigue were identified. The first pattern, continuous fatigue, was characterized by participants who experienced fatigue at all times, which was their normal, baseline feeling. Within this group, two subgroups were identified. The second pattern of fatigue, post-dialysis fatigue only, was characterized by participants who experienced fatigue only after their hemodialysis session. This study is unique because it expands our knowledge about hemodialysis and fatigue by describing the patterns that fatigue follows over time from one hemodialysis session to the next. Insight into these phenomena could help ameliorate fatigue and allow nurses to tailor interventions for patients on hemodialysis. PMID:27254968

  14. Can acoustic emissions patterns signal imminence of avalanche events in a growing sand pile?

    NASA Astrophysics Data System (ADS)

    Vögtli, Melanie; Lehmann, Peter; Breitenstein, Daniel; Or, Dani

    2014-05-01

    Gravity driven mass release is often triggered abruptly with limited precursory cues to indicate imminent failure and thus limiting early warning. Evidence suggests that with increased mechanical loading of a slope, numerous local damage events marking friction between rearranged particles or breakage of roots release strain energy as elastic waves measurable as acoustic emissions. We examined the potential predictability of mass release events from preceding acoustic emission (AE) signatures in a well-known and simple model system of a growing sand pile. We installed four AE-sensors within the core of a 30 cm (diameter) sand pile fed by a constant input of grains and mounted on a balance. Subsequent to the convergence of the slope to dynamic angle of repose, sand avalanche across the bottom boundary were monitored by abrupt mass change and by the amplitudes and number of AE events (recorded at high frequency and averaged to 0.2 s). We detected a systematic change of AE-patterns characterized by systematically decreasing AE standard deviation prior to each mass release. Although the lead time following minimum AE standard deviation was relatively short (10s of seconds), the AE signature already started to change minutes before the mass release. Accordingly the information embedded in AE signal dynamics could potentially offer larger lead times for systems of practical interest.

  15. Spatial and temporal patterns of cloud cover and fog inundation in coastal California: Ecological implications

    USGS Publications Warehouse

    Rastogi, Bharat; Williams, A. Park; Fischer, Douglas T.; Iacobellis, Sam F.; McEachern, Kathryn; Carvalho, Leila; Jones, Charles Leslie; Baguskas, Sara A.; Still, Christopher J.

    2016-01-01

    The presence of low-lying stratocumulus clouds and fog has been known to modify biophysical and ecological properties in coastal California where forests are frequently shaded by low-lying clouds or immersed in fog during otherwise warm and dry summer months. Summer fog and stratus can ameliorate summer drought stress and enhance soil water budgets, and often have different spatial and temporal patterns. Here we use remote sensing datasets to characterize the spatial and temporal patterns of cloud cover over California’s northern Channel Islands. We found marine stratus to be persistent from May through September across the years 2001-2012. Stratus clouds were both most frequent and had the greatest spatial extent in July. Clouds typically formed in the evening, and dissipated by the following early afternoon. We present a novel method to downscale satellite imagery using atmospheric observations and discriminate patterns of fog from those of stratus and help explain patterns of fog deposition previously studied on the islands. The outcomes of this study contribute significantly to our ability to quantify the occurrence of coastal fog at biologically meaningful spatial and temporal scales that can improve our understanding of cloud-ecosystem interactions, species distributions and coastal ecohydrology.

  16. Arbitrary two-dimensional multiphoton excitation patterns with temporally focused digital holograms

    NASA Astrophysics Data System (ADS)

    Oron, Dan; Papagiakoumou, Eirini; de-Sars, Vincent; Emiliani, Valentina

    2009-02-01

    Multiphoton excitation has recently found application in the fields of bioimaging, uncaging and lithography. In order to fully exploit the advantages of nonlinear excitation, in particular the axial resolution due to nonlinearity, most systems to date operate with point or multipoint excitation, while scanning either the laser beam or the sample to generate the illumination pattern. Here we combine the recently introduced technique of scanningless multiphoton excitation by temporal focusing with recent advances in digital holography to generate arbitrarily shaped, depth resolved, two-dimensional excitation patterns completely without scanning. This is of particular importance in applications requiring uniform excitation of large areas over short time scales, such as neuronal activation by multiphoton uncaging of neurotransmitters. We present an experimental and theoretical analysis of the effect of spatial patterning on the depth resolution achieved in temporal focusing microscopy. It is shown that the depth resolution for holographic excitation is somewhat worse than that achieved for uniform illumination. This is also accompanied by the appearance of a speckle pattern at the temporal focal plane. The origin of the two effects, as well as means to overcome them, are discussed.

  17. Temporal consistency of spatial pattern in growth of the mussel, Mytilus edulis: Implications for predictive modelling

    NASA Astrophysics Data System (ADS)

    Bergström, Per; Lindegarth, Susanne; Lindegarth, Mats

    2013-10-01

    Human pressures on coastal seas are increasing and methods for sustainable management, including spatial planning and mitigative actions, are therefore needed. In coastal areas worldwide, the development of mussel farming as an economically and ecologically sustainable industry requires geographic information on the growth and potential production capacity. In practice this means that coherent maps of temporally stable spatial patterns of growth need to be available in the planning process and that maps need to be based on mechanistic or empirical models. Therefore, as a first step towards development of models of growth, we assessed empirically the fundamental requirement that there are temporally consistent spatial patterns of growth in the blue mussel, Mytilus edulis. Using a pilot study we designed and dimensioned a transplant experiment, where the spatial consistency in the growth of mussels was evaluated at two resolutions. We found strong temporal and scale-dependent spatial variability in growth but patterns suggested that spatial patterns were uncoupled between growth of shell and that of soft tissue. Spatial patterns of shell growth were complex and largely inconsistent among years. Importantly, however, the growth of soft tissue was qualitatively consistent among years at the scale of km. The results suggest that processes affecting the whole coastal area cause substantial differences in growth of soft tissue among years but that factors varying at the scale of km create strong and persistent spatial patterns of growth, with a potential doubling of productivity by identifying the most suitable locations. We conclude that the observed spatial consistency provides a basis for further development of predictive modelling and mapping of soft tissue growth in these coastal areas. Potential causes of observed patterns, consequences for mussel-farming as a tool for mitigating eutrophication, aspects of precision of modelling and sampling of mussel growth as well

  18. Three Eurasian teleconnection patterns: spatial structures, temporal variability, and associated winter climate anomalies

    NASA Astrophysics Data System (ADS)

    Liu, Yuyun; Wang, Lin; Zhou, Wen; Chen, Wen

    2014-06-01

    The Eurasian (EU) pattern is a distinct teleconnection pattern observed in boreal winter. Since the EU pattern was first identified, three types have been reported in the literature: the conventional EU pattern; the type 1 EU pattern, or Scandinavian (SCAND) pattern; and the type 2 EU pattern, or East Atlantic/West Russia (EATL/WRUS) pattern. Based on several reanalysis and observational datasets, the three EU patterns are extracted using the rotated empirical orthogonal function method. In order to provide a further distinction and understanding of the three EU patterns, a comprehensive side-by-side comparison is performed among them including their temporal variability, horizontal and vertical structure, related stationary Rossby wave activity, impact on climate, and possible driving factors associated with external forcing. The results reveal that all three EU patterns are characterised by a clear quasi-barotropic wave-train structure, but each has a distinct source and centre of action. Accordingly, their impacts on the precipitation and surface air temperature also differ from one other. Further evidence suggests that the conventional EU pattern is likely driven by anomalous sea surface temperatures (SST) over the North Atlantic, in which process the transient eddies are actively involved. The SCAND pattern is partly maintained by the vorticity source over Western Europe, which arises from the anomalous convergence/divergence over the Mediterranean and is efficiently driven by the tropical and southern Indian Ocean SST via divergent circulation. The EATL/WRUS pattern shows some linkage to the North American snow cover, and the involved process remains unclear and needs further investigation.

  19. Temporal patterns of deer-vehicle collisions consistent with deer activity pattern and density increase but not general accident risk.

    PubMed

    Hothorn, Torsten; Müller, Jörg; Held, Leonhard; Möst, Lisa; Mysterud, Atle

    2015-08-01

    The increasing number of deer-vehicle collisions (DVCs) across Europe during recent decades poses a serious threat to human health and animal welfare and increasing costs for society. DVCs are triggered by both a human-related and a deer-related component. Mitigation requires an understanding of the processes driving temporal and spatial collision patterns. Separating human-related from deer-related processes is important for identifying potentially effective countermeasures, but this has rarely been done. We analysed two time series of 341,655 DVCs involving roe deer and 854,659 non-deer-related accidents (non-DVCs) documented between 2002 and 2011. Nonparametric smoothing and temporal parametric modelling were used to estimate annual, seasonal, weekly and diurnal patterns in DVCs, non-DVCs and adjusted DVCs. As we had access to data on both DVCs and non-DVCs, we were able to disentangle the relative role of human-related and deer-related processes contributing to the overall temporal DVC pattern. We found clear evidence that variation in DVCs was mostly driven by deer-related and not human-related activity on annual, seasonal, weekly and diurnal scales. A very clear crepuscular activity pattern with high activity after sunset and around sunrise throughout the year was identified. Early spring and the mating season between mid-July and mid-August are typically periods of high roe deer activity, and as expected we found a high number of DVC during these periods, although these patterns differed tremendously during different phases of a day. The role of human activity was mainly reflected in fewer DVCs on weekends than on weekdays. Over the ten-year study period, we estimated that DVCs increased by 25%, whereas the number of non-DVCs decreased by 10%. Increasing deer densities are the most likely driver behind this rise in DVCs. Precise estimates of DVC patterns and their relationship to deer and human activity patterns allow implementation of specific mitigation

  20. Acoustic Emission Patterns and the Transition to Ductility in Sub-Micron Scale Laboratory Earthquakes

    NASA Astrophysics Data System (ADS)

    Ghaffari, H.; Xia, K.; Young, R.

    2013-12-01

    We report observation of a transition from the brittle to ductile regime in precursor events from different rock materials (Granite, Sandstone, Basalt, and Gypsum) and Polymers (PMMA, PTFE and CR-39). Acoustic emission patterns associated with sub-micron scale laboratory earthquakes are mapped into network parameter spaces (functional damage networks). The sub-classes hold nearly constant timescales, indicating dependency of the sub-phases on the mechanism governing the previous evolutionary phase, i.e., deformation and failure of asperities. Based on our findings, we propose that the signature of the non-linear elastic zone around a crack tip is mapped into the details of the evolutionary phases, supporting the formation of a strongly weak zone in the vicinity of crack tips. Moreover, we recognize sub-micron to micron ruptures with signatures of 'stiffening' in the deformation phase of acoustic-waveforms. We propose that the latter rupture fronts carry critical rupture extensions, including possible dislocations faster than the shear wave speed. Using 'template super-shear waveforms' and their network characteristics, we show that the acoustic emission signals are possible super-shear or intersonic events. Ref. [1] Ghaffari, H. O., and R. P. Young. "Acoustic-Friction Networks and the Evolution of Precursor Rupture Fronts in Laboratory Earthquakes." Nature Scientific reports 3 (2013). [2] Xia, Kaiwen, Ares J. Rosakis, and Hiroo Kanamori. "Laboratory earthquakes: The sub-Rayleigh-to-supershear rupture transition." Science 303.5665 (2004): 1859-1861. [3] Mello, M., et al. "Identifying the unique ground motion signatures of supershear earthquakes: Theory and experiments." Tectonophysics 493.3 (2010): 297-326. [4] Gumbsch, Peter, and Huajian Gao. "Dislocations faster than the speed of sound." Science 283.5404 (1999): 965-968. [5] Livne, Ariel, et al. "The near-tip fields of fast cracks." Science 327.5971 (2010): 1359-1363. [6] Rycroft, Chris H., and Eran Bouchbinder

  1. Effects of varying temporal scale on spatial models of mortality patterns attributed to pediatric diarrhea

    PubMed Central

    Leyk, S; McCormick, BJJ; Nuckols, JR

    2011-01-01

    Public health data is often highly aggregated in time and space. The consequences of temporal aggregation for modeling in support of policy decisions have largely been overlooked. We examine the effects of changing temporal scale on spatial regression models of pediatric diarrhea mortality patterns, mortality rates and mortality peak timing, in Mexico. We compare annual and decadal level univariate models that incorporate known risk factors. Based on normalized sums of squared differences we compare between annual and decadal coefficients for variables that were significant in decadal models. We observed that spurious relationships might be created through aggregating time scales; eliminating inter-annual variation and resulting in inflated model diagnostics. In fact, variable selection and coefficient values can vary with changing temporal aggregation. Some variables that were significant at the decadal level were not significant at the annual level. Implications of such aggregation should be part of risk communication to policy makers. PMID:22623950

  2. Brain responses in humans reveal ideal observer-like sensitivity to complex acoustic patterns.

    PubMed

    Barascud, Nicolas; Pearce, Marcus T; Griffiths, Timothy D; Friston, Karl J; Chait, Maria

    2016-02-01

    We use behavioral methods, magnetoencephalography, and functional MRI to investigate how human listeners discover temporal patterns and statistical regularities in complex sound sequences. Sensitivity to patterns is fundamental to sensory processing, in particular in the auditory system, because most auditory signals only have meaning as successions over time. Previous evidence suggests that the brain is tuned to the statistics of sensory stimulation. However, the process through which this arises has been elusive. We demonstrate that listeners are remarkably sensitive to the emergence of complex patterns within rapidly evolving sound sequences, performing on par with an ideal observer model. Brain responses reveal online processes of evidence accumulation--dynamic changes in tonic activity precisely correlate with the expected precision or predictability of ongoing auditory input--both in terms of deterministic (first-order) structure and the entropy of random sequences. Source analysis demonstrates an interaction between primary auditory cortex, hippocampus, and inferior frontal gyrus in the process of discovering the regularity within the ongoing sound sequence. The results are consistent with precision based predictive coding accounts of perceptual inference and provide compelling neurophysiological evidence of the brain's capacity to encode high-order temporal structure in sensory signals. PMID:26787854

  3. Brain responses in humans reveal ideal observer-like sensitivity to complex acoustic patterns

    PubMed Central

    Pearce, Marcus T.; Griffiths, Timothy D.; Chait, Maria

    2016-01-01

    We use behavioral methods, magnetoencephalography, and functional MRI to investigate how human listeners discover temporal patterns and statistical regularities in complex sound sequences. Sensitivity to patterns is fundamental to sensory processing, in particular in the auditory system, because most auditory signals only have meaning as successions over time. Previous evidence suggests that the brain is tuned to the statistics of sensory stimulation. However, the process through which this arises has been elusive. We demonstrate that listeners are remarkably sensitive to the emergence of complex patterns within rapidly evolving sound sequences, performing on par with an ideal observer model. Brain responses reveal online processes of evidence accumulation—dynamic changes in tonic activity precisely correlate with the expected precision or predictability of ongoing auditory input—both in terms of deterministic (first-order) structure and the entropy of random sequences. Source analysis demonstrates an interaction between primary auditory cortex, hippocampus, and inferior frontal gyrus in the process of discovering the regularity within the ongoing sound sequence. The results are consistent with precision based predictive coding accounts of perceptual inference and provide compelling neurophysiological evidence of the brain's capacity to encode high-order temporal structure in sensory signals. PMID:26787854

  4. Surface acoustic wave sensor array system for trace organic vapor detection using pattern recognition analysis

    NASA Astrophysics Data System (ADS)

    Rose-Pehrsson, Susan L.; Grate, Jay W.; Klusty, Mark

    1993-03-01

    A sensor system using surface acoustic wave (SAW) vapor sensors has been fabricated and tested against hazardous organic vapors, simulants of these vapors, and potential background vapors. The vapor tests included two- and three-component mixtures, and covered a wide relative humidity range. The sensor system was compared of four SAW devices coated with different sorbent materials with different vapor selectivities. Preconcentrators were included to improve sensitivity. The vapor experiments were organized into a large data set analyzed using pattern recognition techniques. Pattern recognition algorithms were developed to identify two different classes of hazards. The algorithms were verified against a second data set not included in the training. Excellent sensitivity was achieved by the sensor coatings, and the pattern recognition analysis, and was also examined by the preconcentrators. The system can detect hazardous vapors of interest in the ppb range even in varying relative humidity and in the presence of background vapors. The system does not false alarm to a variety of other vapors including gasoline, jet fuel, diesel fuel and cigarette smoke.

  5. Exploratory Analysis of Spatial-Temporal Patterns of Air Pollution in the City

    NASA Astrophysics Data System (ADS)

    Champendal, Alexandre; Kanevski, Mikhail; Huguenot, Pierre-Emmanuel; Golay, Jean

    2013-04-01

    Air pollution in the city is an important problem influencing environment, well-being of society, economy, management of urban zones, etc. The problem is extremely difficult due to a very complex distribution of the pollution sources, morphology of the city and dispersion processes leading to multivariate nature of the phenomena and high local spatial-temporal variability. The task of understanding, modelling and prediction of spatial-temporal patterns of air pollution in urban zones is an interesting and challenging topic having many research axes from science-based modelling to geostatistics and data mining. The present research mainly deals with a comprehensive exploratory analysis of spatial-temporal air pollution data using statistical, geostatistical and machine learning tools. This analysis helps to 1) understand and model spatial-temporal correlations using variography, 2) explore the temporal evolution of spatial correlation matrix; 3) analyse and visualize an interconnection between measurement stations using network science tools; 4) quantify the availability and predictability of structured patterns. The real data case study deals with spatial-temporal air pollution data of canton Geneva (2002-2011). Carbon dioxide (NO2) have caught our attention. It has effects on health: nitrogen dioxide can irritate the lungs, effects on plants; NO2 contributes to the phenomenon of acid rain. The negative effects of nitrogen dioxides on plants are reducing the growth, production and pesticide resistance. And finally the effects on materials: nitrogen dioxides increase the corrosion. Well-defined patterns of spatial-temporal correlations were detected. The analysis and visualization of spatial correlation matrix for 91 stations were carried out using the network science tools and high levels of clustering were revealed. Moving Window Correlation Matrix and Spatio-temporal variography methods were applied to define and explore the dynamic of our data. More than just

  6. Empirical macroscopic features of spatial-temporal traffic patterns at highway bottlenecks.

    PubMed

    Kerner, Boris S

    2002-04-01

    Results of an empirical study of congested patterns measured during 1995-2001 at German highways are presented. Based on this study, various types of congested patterns at on and off ramps have been identified, their macroscopic spatial-temporal features have been derived, and an evolution of those patterns and transformations between different types of the patterns over time has been found out. It has been found that at an isolated bottleneck (a bottleneck that is far enough from other effective bottlenecks) either the general pattern (GP) or the synchronized flow pattern (SP) can be formed. In GP, synchronized flow occurs and wide moving jams spontaneously emerge in that synchronized flow. In SP, no wide moving jams emerge, i.e., SP consists of synchronized flow only. An evolution of GP into SP when the flow rate to the on ramp decreases has been found and investigated. Spatial-temporal features of complex patterns that occur if two or more effective bottlenecks exist on a highway have been found out. In particular, the expanded pattern where synchronized flow covers two or more effective bottlenecks can be formed. It has been found that the spatial-temporal structure of congested patterns possesses predictable, i.e., characteristic, unique, and reproducible features, for example, the most probable types of patterns that are formed at a given bottleneck. According to the empirical investigations the cases of the weak and the strong congestion should be distinguished. In contrast to the weak congestion, the strong congestion possesses the following characteristic features: (i) the flow rate in synchronized flow is self-maintaining near a limit flow rate; (ii) the mean width of the region of synchronized flow in GP does not depend on traffic demand; (iii) there is a correlation between the parameters of synchronized flow and wide moving jams: the higher the flow rate out from a wide moving jam is, the higher is the limit flow rate in the synchronized flow. The

  7. Selective control of physiological responses by temporally-patterned electrical stimulation of the canine vagus nerve.

    PubMed

    Yoo, Paul B; Hincapie, Juan G; Hamann, Jason J; Ruble, Stephen B; Wolf, Patrick D; Grill, Warren M

    2011-01-01

    Vagus nerve stimulation (VNS) is effective for treating epilepsy and depression, and has emerging indications for anxiety and heart failure. However, stimulation-evoked side effects remain a challenge for long-term compliance. We investigated the feasibility of reducing VNS side effects by using a temporally-modified stimulation pattern. In 4 anesthetized canines, we measured changes in both the heart rate and evoked laryngeal muscle activity. Compared to baseline, we found that a 5% duty cycle (measured by the number of pulses per second of stimulation) could still evoke a 21% reduction in heart rate; whereas compared to continuous stimulation (3 mA, 300 μs pulsewidth, 20 Hz) the same 5% duty cycle reduced the evoked laryngeal muscle activity by 90%. The results of this study indicate that temporally-patterned stimulation may provide an effective tool for optimizing VNS therapy. PMID:22254997

  8. Reliability of spatial and temporal patterns of C. finmarchicus inferred from the CPR survey

    NASA Astrophysics Data System (ADS)

    Hélaouët, Pierre; Beaugrand, Grégory; Reygondeau, Gabriel

    2016-01-01

    The Continuous Plankton Recorder (CPR) survey has collected plankton since 1958 in the North Atlantic Ocean and its adjacent seas. Among all species recorded by the CPR, Calanus finmarchicus has probably been the most investigated species because of its ecological importance for the temperate and subpolar regions of the North Atlantic Ocean. However, abundances of C. finmarchicus assessed from the CPR survey have been rarely compared to more traditional sampling methodologies. In this study, we examine and compare spatial (surface and vertical) and temporal (diel and seasonal) patterns in the abundance of C. finmarchicus with another sampling technique in the gulf of Maine. Our results provide evidence that the CPR survey not only gives internally consistent time series of C. finmarchicus, but also an accurate representation of both spatial (surface and vertical) and temporal (diel and seasonal) patterns.

  9. Automatic classification of acetowhite temporal patterns to identify precursor lesions of cervical cancer

    NASA Astrophysics Data System (ADS)

    Gutiérrez-Fragoso, K.; Acosta-Mesa, H. G.; Cruz-Ramírez, N.; Hernández-Jiménez, R.

    2013-12-01

    Cervical cancer has remained, until now, as a serious public health problem in developing countries. The most common method of screening is the Pap test or cytology. When abnormalities are reported in the result, the patient is referred to a dysplasia clinic for colposcopy. During this test, a solution of acetic acid is applied, which produces a color change in the tissue and is known as acetowhitening phenomenon. This reaction aims to obtaining a sample of tissue and its histological analysis let to establish a final diagnosis. During the colposcopy test, digital images can be acquired to analyze the behavior of the acetowhitening reaction from a temporal approach. In this way, we try to identify precursor lesions of cervical cancer through a process of automatic classification of acetowhite temporal patterns. In this paper, we present the performance analysis of three classification methods: kNN, Naïve Bayes and C4.5. The results showed that there is similarity between some acetowhite temporal patterns of normal and abnormal tissues. Therefore we conclude that it is not sufficient to only consider the temporal dynamic of the acetowhitening reaction to establish a diagnosis by an automatic method. Information from cytologic, colposcopic and histopathologic disciplines should be integrated as well.

  10. Temporal patterns of native Mandarin Chinese speakers' productions of English stop-vowel syllable

    NASA Astrophysics Data System (ADS)

    Wang, Yue; Behne, Dawn M.

    2001-05-01

    Second language (L2) production can be a kind of interlanguage, a relatively stable system bearing the nature of both the native language (L1) and L2. Within such a system sound components of a syllable may bear their own interlanguage characteristics and yet interact with the other component sounds. The present study investigates temporal patterns of L1-L2 interaction at the syllable level. Audio recordings were made of English stop-vowel syllables produced by native speakers of Mandarin who were fluent in English (ChE). Native English productions (AmE) of these syllables and native productions of Mandarin (ChM) stop-vowel syllables were acquired as native norms. Temporal measures included stop closure duration, voice-onset time (VOT), vowel duration, and syllable duration. Results show that the internal timing components of ChE often deviate from AmE, with the closure duration, VOT, and vowel duration being intermediate to AmE and ChM. However, at the syllable level, ChE productions tend to follow the overall patterns of AmE. Temporal deviations were often compensated by temporal compensation of other components in the syllable, maintaining a balanced consonant/vowel distribution. These findings have implications for a broader understanding of L2 productions.

  11. Synchronization and control in time-delayed complex networks and spatio-temporal patterns

    NASA Astrophysics Data System (ADS)

    Banerjee, S.; Kurths, J.; Schöll, E.

    2016-02-01

    This special topics issue is a collection of contributions on the recent developments of control and synchronization in time delayed systems and space time chaos. The various articles report interesting results on time delayed complex networks; fractional order delayed models; dynamics of spatio-temporal patterns; stochastic models etc. Experimental analysis on synchronization, dynamics and control of chaos are also well investigated using Field Programmable Gate Array (FPGA), circuit realizations and chemical reactions.

  12. A sequence identification measurement model to investigate the implicit learning of metrical temporal patterns.

    PubMed

    Schultz, Benjamin G; Stevens, Catherine J; Keller, Peter E; Tillmann, Barbara

    2013-01-01

    Implicit learning (IL) occurs unconsciously and without intention. Perceptual fluency is the ease of processing elicited by previous exposure to a stimulus. It has been assumed that perceptual fluency is associated with IL. However, the role of perceptual fluency following IL has not been investigated in temporal pattern learning. Two experiments by Schultz, Stevens, Keller, and Tillmann demonstrated the IL of auditory temporal patterns using a serial reaction-time task and a generation task based on the process dissociation procedure. The generation task demonstrated that learning was implicit in both experiments via motor fluency, that is, the inability to suppress learned information. With the aim to disentangle conscious and unconscious processes, we analyze unreported recognition data associated with the Schultz et al. experiments using the sequence identification measurement model. The model assumes that perceptual fluency reflects unconscious processes and IL. For Experiment 1, the model indicated that conscious and unconscious processes contributed to recognition of temporal patterns, but that unconscious processes had a greater influence on recognition than conscious processes. In the model implementation of Experiment 2, there was equal contribution of conscious and unconscious processes in the recognition of temporal patterns. As Schultz et al. demonstrated IL in both experiments using a generation task, and the conditions reported here in Experiments 1 and 2 were identical, two explanations are offered for the discrepancy in model and behavioral results based on the two tasks: 1) perceptual fluency may not be necessary to infer IL, or 2) conscious control over implicitly learned information may vary as a function of perceptual fluency and motor fluency. PMID:24086461

  13. Insights into temporal patterns of hospital patient safety from routinely collected electronic data

    PubMed Central

    2015-01-01

    Background The last two decades have seen an unprecedented growth in initiatives aimed to improve patient safety. For the most part, however, evidence of their impact remains controversial. At the same time, the healthcare industry has experienced an also unprecedented growth in the amount and variety of available electronic data. Methods In this paper, we provide a review of the use of routinely collected electronic data in the identification, analysis and surveillance of temporal patterns of patient safety. Results Two important temporal patterns of the safety of hospitalised patients were identified and discussed: long-term trends related to changes in clinical practice and healthcare policy; and shorter term patterns related to variations in workforce and resources. We found that consistency in reporting is intrinsically related to availability of large-scale, fit-for-purpose data. Consistent reported trends of patient harms included an increase in the incidence of post-operative sepsis and a decrease in central-line associated bloodstream infections. Improvement in the treatment of specific diseases, such as cardiac conditions, has also been demonstrated. Linkage of hospital data with other datasets provides essential temporal information about errors, as well as information about unsuspected system deficiencies. It has played an important role in the measurement and analysis of the effects of off-hours hospital operation. Conclusions Measuring temporal patterns of patient safety is still inadequate with electronic health records not yet playing an important role. Patient safety interventions should not be implemented without a strategy for continuous monitoring of their effect. PMID:25870757

  14. Satellite analysis of temporal and spatial chlorophyll patterns on the West Florida Shelf (1997-2003)

    NASA Astrophysics Data System (ADS)

    Vanderbloemen, Lisa Anne

    The objective of this dissertation is to gain a better understanding of the environmental and climatic effects on the temporal and spatial variability of phytoplankton biomass along the West Florida Shelf (WFS). Chapter 1 examines temporal and spatial patterns in chlorophyll concentrations using satellite data collected between 1997 and 2003. Chlorophyll data derived from the SeaWiFS sensor are validated with in-situ data and analyzed. Wind, current, sea surface temperature, river, and rain data are used to better understand the factors responsible for the patterns observed in the satellite data. My question is whether the standard OC-4 algorithm is adequate for studying short-term variability of chlorophyll concentrations along the WFS. I will examine temporal and spatial trends using the OC-4 and compare them to the Carder semi-analytical algorithm which uses remote sensing reflectances at 412nm, 443nm, 490nm, and 555nm to estimate chlorophyll concentrations separately from CDOM estimates (Carder et al 1999, Hu et al 2003). In Chapters 2 and 3 the potential problems due to CDOM and bottom reflectance are examined. In Chapter 2 I analyze the influence of riverine-induced CDOM. Water-leaving radiances (nLw) are analyzed in an effort to discriminate true chlorophyll patterns from CDOM-contaminated signals. Chapter 3 examines the impact of bottom reflectance on the satellite signal by using the percentage of remote sensing reflectance at lambda=555 (Rrs(555)) to differentiate between optically shallow waters and optically deep waters. Optically shallow waters are defined as those with the percentage of Rrs(555) due to bottom reflectance (%bt_555) ≥ 25%, while optically deep waters have %bt_555 ≤ 25%. These analyses will help assess the validity of the temporal and spatial patterns of chlorophyll concentration observed with the SeaWiFS data described in Chapter 1.

  15. The mechanisms of spatial and temporal patterning of cell-edge dynamics.

    PubMed

    Verkhovsky, Alexander B

    2015-10-01

    Adherent cells migrate and change their shape by means of protrusion and retraction at their edges. When and where these activities occur defines the shape of the cell and the way it moves. Despite a great deal of knowledge about the structural organization, components, and biochemical reactions involved in protrusion and retraction, the origins of their spatial and temporal patterns are still poorly understood. Chemical signaling circuitry is believed to be an important source of patterning, but recent studies highlighted mechanisms based on physical forces, motion, and mechanical feedback. PMID:26432504

  16. Study of Spatio-Temporal Immunofluorescence on Bead Patterns in a Microfluidic Channel

    NASA Astrophysics Data System (ADS)

    Sivagnanam, Venkataragavalu; Yang, Hui; Gijs, Martin A. M.

    2010-12-01

    We performed a direct immunoassay inside a microfluidic channel on patterned streptavidin-coated beads, which captured fluorescently-labeled biotin target molecules from a continuous flow. We arranged the beads in a dot array at the bottom of the channel and demonstrated their position- and flow rate-dependent fluorescence. As the target analyte gets gradually depleted from the flow when passing downstream the channel, the highest fluorescence intensity was observed on the most upstream positioned dot patterns. We propose a simple analytical convection model to explain this spatio-temporal fluorescence.

  17. Environmental effects on spatial and temporal patterns of leaf and root growth.

    PubMed

    Walter, Achim; Silk, Wendy K; Schurr, Ulrich

    2009-01-01

    Leaves and roots live in dramatically different habitats, but are parts of the same organism. Automated image processing of time-lapse records of these organs has led to understanding of spatial and temporal patterns of growth on time scales from minutes to weeks. Growth zones in roots and leaves show distinct patterns during a diel cycle (24 h period). In dicot leaves under nonstressful conditions these patterns are characterized by endogenous rhythms, sometimes superimposed upon morphogenesis driven by environmental variation. In roots and monocot leaves the growth patterns depend more strongly on environmental fluctuations. Because the impact of spatial variations and temporal fluctuations of above- and belowground environmental parameters must be processed by the plant body as an entire system whose individual modules interact on different levels, growth reactions of individual modules are often highly nonlinear. A mechanistic understanding of plant resource use efficiency and performance in a dynamically fluctuating environment therefore requires an accurate analysis of leaf and root growth patterns in conjunction with knowledge of major intraplant communication systems and metabolic pathways. PMID:19575584

  18. Discrimination and Comprehension of Synthetic Speech by Students with Visual Impairments: The Case of Similar Acoustic Patterns

    ERIC Educational Resources Information Center

    Papadopoulos, Konstantinos; Argyropoulos, Vassilios S.; Kouroupetroglou, Georgios

    2008-01-01

    This study examined the perceptions held by sighted students and students with visual impairments of the intelligibility and comprehensibility of similar acoustic patterns produced by synthetic speech. It determined the types of errors the students made and compared the performance of the two groups on auditory discrimination and comprehension.

  19. Groundwater-Surface Water Interactions along a Lake Shore: Spatial Patterns and Temporal Dynamics

    NASA Astrophysics Data System (ADS)

    Blume, T.; Tecklenburg, C.; Krause, S.; Lewandowski, J.

    2012-12-01

    In this study the spatial and temporal variability of groundwater-surface water interactions along a lake shore is investigated by combining different experimental methods. Study area is Lake Hinnensee, situated in the lake district north of Berlin in Germany. The lake is a seepage lake with no surface inflows or outflows. To investigate the spatial patterns of groundwater surface water interactions as well as their temporal dynamics we applied a number of different techniques: snapshots of spatial patterns were determined by gridded measurements of temperature profiles in the lake sediment as well as with distributed temperature sensing (DTS), using a fiber optic cable placed at the sediment surface. The spatial resolution of measurements adequate for pattern detection was determined by comparing experimental designs at various spatial scales and resolutions. Continuous time series of water levels and temperature time series in piezometer transects at different locations along the lake shore give insight into both spatial variability and temporal dynamics of vertical hydraulic gradients and heat transport. Exfiltration rates of groundwater into the lake were estimated with 3 different approaches. The experimental methodologies were evaluated in a "cost-benefit" analysis, comparing effort with scientific benefit. The results show that groundwater exfiltration into the lake is to some extent variable in time and is highly variable in space: there is a strong gradient perpendicular to the lake shore as well as high heterogeneity along the lake shore.

  20. Modulation of heart rate by temporally patterned vagus nerve stimulation in the anesthetized dog.

    PubMed

    Yoo, Paul B; Liu, Haoran; Hincapie, Juan G; Ruble, Stephen B; Hamann, Jason J; Grill, Warren M

    2016-02-01

    Despite current knowledge of the myriad physiological effects of vagus nerve stimulation (VNS) in various mammalian species (including humans), the impact of varying stimulation parameters on nerve recruitment and physiological responses is not well understood. We investigated nerve recruitment, cardiovascular responses, and skeletal muscle responses to different temporal patterns of VNS across 39 combinations of stimulation amplitude, frequency, and number of pulses per burst. Anesthetized dogs were implanted with stimulating and recording cuff electrodes around the cervical vagus nerve, whereas laryngeal electromyogram (EMG) and heart rate were recorded. In seven of eight dogs, VNS-evoked bradycardia (defined as ≥10% decrease in heart rate) was achieved by applying stimuli at amplitudes equal to or greater than the threshold for activating slow B-fibers. Temporally patterned VNS (minimum 5 pulses per burst) was sufficient to elicit bradycardia while reducing the concomitant activation of laryngeal muscles by more than 50%. Temporal patterns of VNS can be used to modulate heart rate while minimizing laryngeal motor fiber activation, and this is a novel approach to reduce the side effects produced by VNS. PMID:26811057

  1. Searching for the Holy Grail: Temporally Informative Firing Patterns in the Rat

    PubMed Central

    Matell, Matthew S.

    2015-01-01

    This chapter reviews our work from the past decade investigating cortical and striatal firing patterns in rats while they time intervals in the multi-seconds range. We have found that both cortical and striatal firing rates contain information that the rat can use to identify how much time has elapsed both from trial onset and from the onset of an active response state. I describe findings showing that the striatal neurons that are modulated by time are also modulated by overt behaviors, suggesting that time modulates the strength of motor coding in the striatum, rather than being represented as an abstract quantity in isolation. I also describe work showing that there are variety of temporally informative activity patterns in pre-motor neurons, and argue that the heterogeneity of these patterns can enhance an organism's temporal estimate. Finally, I describe recent behavioral work from my lab in which the simultaneous cueing of multiple durations leads to scalar temporal expectation at an intermediate time, providing strong support for a monotonic representation of time. PMID:25358713

  2. Temporal and spatial patterns of diarrhoea in the Mekong Delta area, Vietnam.

    PubMed

    Phung, D; Huang, C; Rutherford, S; Chu, C; Wang, X; Nguyen, M; Nguyen, N H; Do, C M; Nguyen, T H

    2015-12-01

    This study examined the temporal and spatial patterns of diarrhoea in relation to hydro-meteorological factors in the Mekong Delta area in Vietnam. A time-series design was applied to examine the temporal pattern of the climate-diarrhoea relationship using Poisson regression models. Spatial analysis was applied to examine the spatial clusters of diarrhoea using Global Moran's I and local indicators of spatial autocorrelation (LISA). The temporal pattern showed that the highest peak of diarrhoea was from weeks 30-42 corresponding to August-October annually. A 1 cm increase in river water level at a lag of 1 week was associated with a small [0·07%, 95% confidence interval (CI) 0·01-0·1] increase in the diarrhoeal rate. A 1 °C increase in temperature at lag of 2 and 4 weeks was associated with a 1·5% (95% CI 0·3-2·7) and 1·1% (95% CI 0·1-2·3) increase in diarrhoeal risk, respectively. Relative humidity and diarrhoeal risk were in nonlinear relationship. The spatial analysis showed significant clustering of diarrhoea, and the LISA map shows three multi-centred diarrhoeal clusters and three single-centred clusters in the research location. The findings suggest that climatic conditions projected to be associated with climate change have important implication for human health impact in the Mekong Delta region. PMID:25876699

  3. Spatio-temporal soil moisture patterns - A meta-analysis using plot to catchment scale data

    NASA Astrophysics Data System (ADS)

    Korres, W.; Reichenau, T. G.; Fiener, P.; Koyama, C. N.; Bogena, H. R.; Cornelissen, T.; Baatz, R.; Herbst, M.; Diekkrüger, B.; Vereecken, H.; Schneider, K.

    2015-01-01

    Soil moisture is a key variable in hydrology, meteorology and agriculture. It is influenced by many factors, such as topography, soil properties, vegetation type, management, and meteorological conditions. The role of these factors in controlling the spatial patterns and temporal dynamics is often not well known. The aim of the current study is to analyze spatio-temporal soil moisture patterns acquired across a variety of land use types, on different spatial scales (plot to meso-scale catchment) and with different methods (point measurements, remote sensing, and modeling). We apply a uniform set of tools to determine method specific effects, as well as site and scale specific controlling factors. Spatial patterns of soil moisture and their temporal development were analyzed using nine different datasets from the Rur catchment in Western Germany. For all datasets we found negative linear relationships between the coefficient of variation and the mean soil moisture, indicating lower spatial variability at higher mean soil moisture. For a forest sub-catchment compared to cropped areas, the offset of this relationship was larger, with generally larger variability at similar mean soil moisture values. Using a geostatistical analysis of the soil moisture patterns we identified three groups of datasets with similar values for sill and range of the theoretical variogram: (i) modeled and measured datasets from the forest sub-catchment (patterns mainly influenced by soil properties and topography), (ii) remotely sensed datasets from the cropped part of the Rur catchment (patterns mainly influenced by the land-use structure of the cropped area), and (iii) modeled datasets from the cropped part of the Rur catchment (patterns mainly influenced by large scale variability of soil properties). A fractal analysis revealed that all analyzed soil moisture patterns showed a multifractal behavior, with at least one scale break and generally high fractal dimensions. Corresponding scale

  4. Temporal Changes in Eruptive Behavior at Fuego Volcano, Guatemala Identified with Seismic Coda Wave Interferometry and Seismo-acoustic Observations

    NASA Astrophysics Data System (ADS)

    Erdem, J.; Waite, G. P.

    2011-12-01

    Fuego Volcano (14°29'N, 90°53'W, 3800m) is the southernmost vent of the north-south trending Fuego-Acatenango volcanic complex. A basaltic-andesite stratovolcano, Fuego has had more than 60 sub-plinian eruptions since 1524 AD, making it one of the most active volcanoes in the world. Since 1999 Fuego has exhibited continuous low-level activity, which alternates between periods of lava effusion with strombolian explosions and periods of discrete explosions with no lava effusion. We analyzed 138 explosions recorded on a broadband seismometer and infrasonic microphones from 7 to 14 June 2008 at a distance of 7.5 km from the vent. During the observation period, a new lava flow began. Additional observations were made at a distance of 1 km between 27 June and 1 July 2008. The explosions were identified through a combination of visual field observations and the examination of infrasound records. Acoustic waveform cross-correlation indicated a highly repetitive source appropriate for investigating temporal variations in the wavefield. We measured variations in seismic and acoustic wave arrival time differences in the range of 0.5 s for the more distant station, which might occur as a result of variations in source depth, for example. However, after examining a wind speed model for the region, we find that wind speed variations are more likely to explain the delays. We also detected short-term relative changes in the velocity structure ranging from -0.23% to 0.61% at the distant station and -0.8% to 0.7% at the closer station using seismic coda wave interferometry. This rapid variation, sometimes changing by 0.23% in 90 minutes, may indicate minor fluctuations in volatile content.

  5. Acoustic effects of a superior semicircular canal dehiscence: a temporal bone study.

    PubMed

    Luers, J C; Pazen, D; Meister, H; Lauxmann, M; Eiber, A; Beutner, D; Hüttenbrink, K B

    2015-03-01

    A dehiscence of the superior semicircular canal is said to be responsible for a number of specific and unspecific ear symptoms and possible a conductive hearing loss of up to 40 dB. As in vivo a dehiscence would not be opened against air, but is naturally patched with dura and the brain, it was our aim to investigate the effects of an superior semicircular canal dehiscence on the air conduction hearing in fresh human temporal bones with different boundary conditions. At ten fresh human temporal bones, we investigated the transmission of sound energy through the middle and inner ear using a round window microphone and laser Doppler vibrometer for perilymph motions inside the dehiscence. After baseline measurements, the superior semicircular canal was opened. We investigated the change of the transfer function when the canal is opened against air (pressure equivalent water column), against a water column and when it is patched with a layer of dura. Opening the superior semicircular canal resulted in a loss of sound transmission of maximal 10-15 dB only in frequencies below 1 kHz. When covering the dehiscence with a water column, the conductive hearing component was reduced to 6-8 dB. Placing a dura patch on top of the dehiscence resulted in a normalization of the transfer function. If our experiments are consistent with the conditions in vivo, then superior semicircular canal dehiscence does not lead to an extensive and clinically considerable conductive air conduction component. PMID:24381023

  6. Spatio-Temporal Expression Pattern of Frizzled Receptors after Contusive Spinal Cord Injury in Adult Rats

    PubMed Central

    Arenas, Ernest; Rodriguez, Francisco Javier

    2012-01-01

    Background Wnt proteins are a large family of molecules that are critically involved in multiple central nervous system (CNS) developmental processes. Experimental evidences suggest a role for this family of proteins in many CNS disorders, including spinal cord injury (SCI), which is a major neuropathology owing to its high prevalence and chronic sensorimotor functional sequelae. Interestingly, most Wnt proteins and their inhibitors are expressed in the uninjured spinal cord, and their temporal expression patterns are dramatically altered after injury. However, little is known regarding the expression of their better-known receptors, the Frizzled family, after SCI. Thus, the aim of the present study was to evaluate the expression of Frizzled receptors in the damaged spinal cord. Findings Based on the evidence that Wnts are expressed in the spinal cord and are transcriptionally regulated by SCI in adulthood, we analysed the spatio-temporal mRNA and protein expression patterns of Frizzled receptors after contusive SCI using quantitative RT-PCR and single and double immunohistochemistry, respectively. Our results show that almost all of the 10 known Frizzled receptors were expressed in specific spatial patterns in the uninjured spinal cords. Moreover, the Frizzled mRNAs and proteins were expressed after SCI, although their expression patterns were altered during the temporal progression of SCI. Finally, analysis of cellular Frizzled 5 expression pattern by double immunohistochemistry showed that, in the uninjured spinal cord, this receptor was expressed in neurons, oligodendrocytes, astrocytes, microglia and NG2+ glial precursors. After injury, Frizzled 5 was not only still expressed in oligodendrocytes, astrocytes and NG2+ glial precursors but also in axons at all evaluated time points. Moreover, Frizzled 5 was expressed in reactive microglia/macrophages from 3 to 14 days post-injury. Conclusions Our data suggest the involvement of Frizzled receptors in physiological

  7. Patterns of acoustical activity of bats prior to and following White-nose Syndrome occurrence

    USGS Publications Warehouse

    Ford, W. Mark; Britzke, Eric R.; Dobony, Christopher A.; Rodrigue, Jane L.; Johnson, Joshua B.

    2011-01-01

    White-nose Syndrome (WNS), a wildlife health concern that has decimated cave-hibernating bat populations in eastern North America since 2006, began affecting source-caves for summer bat populations at Fort Drum, a U.S. Army installation in New York in the winter of 2007–2008. As regional die-offs of bats became evident, and Fort Drum's known populations began showing declines, we examined whether WNS-induced change in abundance patterns and seasonal timing of bat activity could be quantified using acoustical surveys, 2003–2010, at structurally uncluttered riparian–water habitats (i.e., streams, ponds, and wet meadows). As predicted, we observed significant declines in overall summer activity between pre-WNS and post-WNS years for little brown bats Myotis lucifugus, northern bats M. septentrionalis, and Indiana bats M. sodalis. We did not observe any significant change in activity patterns between pre-WNS and post-WNS years for big brown bats Eptesicus fuscus, eastern red bats Lasiurus borealis, or the small number of tri-colored bats Perimyotis subflavus. Activity of silver-haired bats Lasionycteris noctivagans increased from pre-WNS to post-WNS years. Activity levels of hoary bats Lasiurus cinereus significantly declined between pre- and post-WNS years. As a nonhibernating, migratory species, hoary bat declines might be correlated with wind-energy development impacts occurring in the same time frame rather than WNS. Intraseason activity patterns also were affected by WNS, though the results were highly variable among species. Little brown bats showed an overall increase in activity from early to late summer pre-WNS, presumably due to detections of newly volant young added to the local population. However, the opposite occurred post-WNS, indicating that reproduction among surviving little brown bats may be declining. Our data suggest that acoustical monitoring during the summer season can provide insights into species' relative abundance on the

  8. Flight and seizure motor patterns in Drosophila mutants: simultaneous acoustic and electrophysiological recordings of wing beats and flight muscle activity.

    PubMed

    Iyengar, Atulya; Wu, Chun-Fang

    2014-01-01

    Abstract Tethered flies allow studies of biomechanics and electrophysiology of flight control. We performed microelectrode recordings of spikes in an indirect flight muscle (the dorsal longitudinal muscle, DLMa) coupled with acoustic analysis of wing beat frequency (WBF) via microphone signals. Simultaneous electrophysiological recording of direct and indirect flight muscles has been technically challenging; however, the WBF is thought to reflect in a one-to-one relationship with spiking activity in a subset of direct flight muscles, including muscle m1b. Therefore, our approach enables systematic mutational analysis for changes in temporal features of electrical activity of motor neurons innervating subsets of direct and indirect flight muscles. Here, we report the consequences of specific ion channel disruptions on the spiking activity of myogenic DLMs (firing at ∼5 Hz) and the corresponding WBF (∼200 Hz). We examined mutants of the genes enconding: 1) voltage-gated Ca(2+) channels (cacophony, cac), 2) Ca(2+)-activated K(+) channels (slowpoke, slo), and 3) voltage-gated K(+) channels (Shaker, Sh) and their auxiliary subunits (Hyperkinetic, Hk and quiver, qvr). We found flight initiation in response to an air puff was severely disrupted in both cac and slo mutants. However, once initiated, slo flight was largely unaltered, whereas cac displayed disrupted DLM firing rates and WBF. Sh, Hk, and qvr mutants were able to maintain normal DLM firing rates, despite increased WBF. Notably, defects in the auxiliary subunits encoded by Hk and qvr could lead to distinct consequences, that is, disrupted DLM firing rhythmicity, not observed in Sh. Our mutant analysis of direct and indirect flight muscle activities indicates that the two motor activity patterns may be independently modified by specific ion channel mutations, and that this approach can be extended to other dipteran species and additional motor programs, such as electroconvulsive stimulation-induced seizures

  9. Spatio-temporal patterns of dengue in Malaysia: combining address and sub-district level.

    PubMed

    Ling, Cheong Y; Gruebner, Oliver; Krämer, Alexander; Lakes, Tobia

    2014-11-01

    Spatio-temporal patterns of dengue risk in Malaysia were studied both at the address and the sub-district level in the province of Selangor and the Federal Territory of Kuala Lumpur. We geocoded laboratory-confirmed dengue cases from the years 2008 to 2010 at the address level and further aggregated the cases in proportion to the population at risk at the sub-district level. Kulldorff's spatial scan statistic was applied for the investigation that identified changing spatial patterns of dengue cases at both levels. At the address level, spatio-temporal clusters of dengue cases were concentrated at the central and south-eastern part of the study area in the early part of the years studied. Analyses at the sub-district level revealed a consistent spatial clustering of a high number of cases proportional to the population at risk. Linking both levels assisted in the identification of differences and confirmed the presence of areas at high risk for dengue infection. Our results suggest that the observed dengue cases had both a spatial and a temporal epidemiological component, which needs to be acknowledged and addressed to develop efficient control measures, including spatially explicit vector control. Our findings highlight the importance of detailed geographical analysis of disease cases in heterogeneous environments with a focus on clustered populations at different spatial and temporal scales. We conclude that bringing together information on the spatio-temporal distribution of dengue cases with a deeper insight of linkages between dengue risk, climate factors and land use constitutes an important step towards the development of an effective risk management strategy. PMID:25545931

  10. Temporal pattern of cocaine intake determines tolerance vs sensitization of cocaine effects at the dopamine transporter.

    PubMed

    Calipari, Erin S; Ferris, Mark J; Zimmer, Benjamin A; Roberts, David C S; Jones, Sara R

    2013-11-01

    The dopamine transporter (DAT) is responsible for terminating dopamine (DA) signaling and is the primary site of cocaine's reinforcing actions. Cocaine self-administration has been shown previously to result in changes in cocaine potency at the DAT. To determine whether the DAT changes associated with self-administration are due to differences in intake levels or temporal patterns of cocaine-induced DAT inhibition, we manipulated cocaine access to produce either continuous or intermittent elevations in cocaine brain levels. Long-access (LgA, 6 h) and short-access (ShA, 2 h) continuous self-administration produced similar temporal profiles of cocaine intake that were sustained throughout the session; however, LgA had greater intake. ShA and intermittent-access (IntA, 6 h) produced the same intake, but different temporal profiles, with 'spiking' brain levels in IntA compared with constant levels in ShA. IntA consisted of 5-min access periods alternating with 25-min timeouts, which resulted in bursts of high responding followed by periods of no responding. DA release and uptake, as well as the potency of cocaine for DAT inhibition, were assessed by voltammetry in the nucleus accumbens slices following control, IntA, ShA, and LgA self-administration. Continuous-access protocols (LgA and ShA) did not change DA parameters, but the 'spiking' protocol (IntA) increased both release and uptake of DA. In addition, high continuous intake (LgA) produced tolerance to cocaine, while 'spiking' (IntA) produced sensitization, relative to ShA and naive controls. Thus, intake and pattern can both influence cocaine potency, and tolerance seems to be produced by high intake, while sensitization is produced by intermittent temporal patterns of intake. PMID:23719505

  11. Spatio-temporal pattern recognizers using spiking neurons and spike-timing-dependent plasticity.

    PubMed

    Humble, James; Denham, Susan; Wennekers, Thomas

    2012-01-01

    It has previously been shown that by using spike-timing-dependent plasticity (STDP), neurons can adapt to the beginning of a repeating spatio-temporal firing pattern in their input. In the present work, we demonstrate that this mechanism can be extended to train recognizers for longer spatio-temporal input signals. Using a number of neurons that are mutually connected by plastic synapses and subject to a global winner-takes-all mechanism, chains of neurons can form where each neuron is selective to a different segment of a repeating input pattern, and the neurons are feed-forwardly connected in such a way that both the correct input segment and the firing of the previous neurons are required in order to activate the next neuron in the chain. This is akin to a simple class of finite state automata. We show that nearest-neighbor STDP (where only the pre-synaptic spike most recent to a post-synaptic one is considered) leads to "nearest-neighbor" chains where connections only form between subsequent states in a chain (similar to classic "synfire chains"). In contrast, "all-to-all spike-timing-dependent plasticity" (where all pre- and post-synaptic spike pairs matter) leads to multiple connections that can span several temporal stages in the chain; these connections respect the temporal order of the neurons. It is also demonstrated that previously learnt individual chains can be "stitched together" by repeatedly presenting them in a fixed order. This way longer sequence recognizers can be formed, and potentially also nested structures. Robustness of recognition with respect to speed variations in the input patterns is shown to depend on rise-times of post-synaptic potentials and the membrane noise. It is argued that the memory capacity of the model is high, but could theoretically be increased using sparse codes. PMID:23087641

  12. Spatio-Temporal Patterns of Barmah Forest Virus Disease in Queensland, Australia

    PubMed Central

    Naish, Suchithra; Hu, Wenbiao; Mengersen, Kerrie; Tong, Shilu

    2011-01-01

    Background Barmah Forest virus (BFV) disease is a common and wide-spread mosquito-borne disease in Australia. This study investigated the spatio-temporal patterns of BFV disease in Queensland, Australia using geographical information system (GIS) tools and geostatistical analysis. Methods/Principal Findings We calculated the incidence rates and standardised incidence rates of BFV disease. Moran's I statistic was used to assess the spatial autocorrelation of BFV incidences. Spatial dynamics of BFV disease was examined using semi-variogram analysis. Interpolation techniques were applied to visualise and display the spatial distribution of BFV disease in statistical local areas (SLAs) throughout Queensland. Mapping of BFV disease by SLAs reveals the presence of substantial spatio-temporal variation over time. Statistically significant differences in BFV incidence rates were identified among age groups (χ2 = 7587, df = 7327,p<0.01). There was a significant positive spatial autocorrelation of BFV incidence for all four periods, with the Moran's I statistic ranging from 0.1506 to 0.2901 (p<0.01). Semi-variogram analysis and smoothed maps created from interpolation techniques indicate that the pattern of spatial autocorrelation was not homogeneous across the state. Conclusions/Significance This is the first study to examine spatial and temporal variation in the incidence rates of BFV disease across Queensland using GIS and geostatistics. The BFV transmission varied with age and gender, which may be due to exposure rates or behavioural risk factors. There are differences in the spatio-temporal patterns of BFV disease which may be related to local socio-ecological and environmental factors. These research findings may have implications in the BFV disease control and prevention programs in Queensland. PMID:22022430

  13. Temporal organization of an anuran acoustic community in a Taiwanese subtropical forest

    USGS Publications Warehouse

    Hsu, M.-Y.; Kam, Y.-C.; Fellers, G.M.

    2006-01-01

    We recorded anuran vocalizations in each of four habitats at Lien Hua Chih Field Station, Taiwan, between July 2000 and July 2001. For each 27 biweekly sample, eight recorders taped calls for 1 min out of every 11 between the hours of 17:00 and 07:00. We obtained 11 481 recordings with calls, and identified 21 503 frogs or groups of frogs. These included 20 species, with an average of 10.4??3.5 species calling each night. Some species called year round, others called in the spring and summer, and a third group called only in the fall and winter. The number of species calling and the maximum calling intensity were correlated with both rainfall and air temperature. The nightly pattern of calling varied among species. Most species called continuously throughout the night, whereas some had a peak right after dusk. A few species had different nightly calling patterns in different habitats. Both Rana limnocharis and Rana kuhlii changed their calling pattern in the presence of large choruses of other anuran species. ?? 2006 The Authors.

  14. Temporal Patterns in Bacterioplankton Community Composition in Three Reservoirs of Similar Trophic Status in Shenzhen, China.

    PubMed

    Li, Jiancheng; Chen, Cheng; Lu, Jun; Lei, Anping; Hu, Zhangli

    2016-01-01

    The bacterioplankton community composition's (BCC) spatial and temporal variation patterns in three reservoirs (Shiyan, Xikeng, and LuoTian Reservoir) of similar trophic status in Bao'an District, Shenzhen (China), were investigated using PCR amplification of the 16S rDNA gene and the denaturing gradient gel electrophoresis (DGGE) techniques. Water samples were collected monthly in each reservoir during 12 consecutive months. Distinct differences were detected in band number, pattern, and density of DGGE at different sampling sites and time points. Analysis of the DGGE fingerprints showed that changes in the bacterial community structure mainly varied with seasons, and the patterns of change indicated that seasonal forces might have a more significant impact on the BCC than eutrophic status in the reservoirs, despite the similar Shannon-Weiner index among the three reservoirs. The sequences obtained from excised bands were affiliated with Cyanobacteria, Firmicutes, Bacteriodetes, Acidobacteria, Actinobacteria, Planctomycetes, and Proteobacteria. PMID:27322295

  15. Temporal Patterns in Bacterioplankton Community Composition in Three Reservoirs of Similar Trophic Status in Shenzhen, China

    PubMed Central

    Li, Jiancheng; Chen, Cheng; Lu, Jun; Lei, Anping; Hu, Zhangli

    2016-01-01

    The bacterioplankton community composition’s (BCC) spatial and temporal variation patterns in three reservoirs (Shiyan, Xikeng, and LuoTian Reservoir) of similar trophic status in Bao’an District, Shenzhen (China), were investigated using PCR amplification of the 16S rDNA gene and the denaturing gradient gel electrophoresis (DGGE) techniques. Water samples were collected monthly in each reservoir during 12 consecutive months. Distinct differences were detected in band number, pattern, and density of DGGE at different sampling sites and time points. Analysis of the DGGE fingerprints showed that changes in the bacterial community structure mainly varied with seasons, and the patterns of change indicated that seasonal forces might have a more significant impact on the BCC than eutrophic status in the reservoirs, despite the similar Shannon-Weiner index among the three reservoirs. The sequences obtained from excised bands were affiliated with Cyanobacteria, Firmicutes, Bacteriodetes, Acidobacteria, Actinobacteria, Planctomycetes, and Proteobacteria. PMID:27322295

  16. Microscopic theory of spatial-temporal congested traffic patterns at highway bottlenecks.

    PubMed

    Kerner, Boris S; Klenov, Sergey L

    2003-09-01

    A microscopic theory of spatial-temporal congested traffic patterns at highway bottlenecks due to on-ramps, merge bottlenecks (a reduction of highway lanes), and off-ramps is presented. The basic postulate of three-phase traffic theory is used, which claims that homogeneous (in space and time) model solutions (steady states) of synchronized flow cover a two dimensional region in the flow-density plane [B. S. Kerner, Phys. Rev. Lett. 81, 3797 (1998); Trans. Res. Rec. 1678, 160 (1999)]. Phase transitions leading to diverse congested patterns, pattern evolution, and pattern nonlinear features have been found. Diagrams of congested patterns, i.e., regions of the pattern emergence dependent on traffic demand, have been derived. Diverse effects of metastability with respect to the pattern formation have been found. The microscopic theory allows us to explain the main empirical pattern features at on-ramps and off-ramps which have recently been found [B. S. Kerner, Phys. Rev. E 65, 046138 (2002)]. (i) Rather than moving jams, synchronized flow first occurs at bottlenecks if the flow rate is slowly increasing. Wide moving jams can spontaneously occur only in synchronized flow. (ii) General patterns (GP) and synchronized flow patterns (SP) can spontaneously emerge at the bottlenecks. There can be the widening SP (WSP), the moving SP (MSP), and the localized SP. (iii) At on-ramps cases of "weak" and "strong" congestion should be distinguished. In contrast to weak congestion, under strong congestion the flow rate in synchronized flow in GP reaches a limit flow rate, the frequency of the moving jam emergence reaches a maximum, i.e., the GP characteristics under strong congestion do not depend on traffic demand. (iv) At the off-ramp GP with weak congestion occur. (v) A study of the pattern formation on a highway with two bottlenecks shows that diverse expanded patterns can occur, which cover both bottlenecks. SP first emerged at the downstream bottleneck can be caught at the

  17. Spatio-temporal soil moisture patterns across gradients of vegetation and topography

    NASA Astrophysics Data System (ADS)

    Hassler, Sibylle; Weiler, Markus; Blume, Theresa

    2014-05-01

    Soil moisture dynamics control hydrological processes on various scales: changes in local water storage and potential activation of preferential flow paths influence connectivity and runoff from hillslopes and ultimately the discharge response of the stream. The spatio-temporal patterns of soil moisture, however, are dependent on a combination of local parameters such as soil type, vegetation and topography as well as meteorological conditions, antecedent moisture and seasonality. In an integrative monitoring study carried out within the CAOS observatory in Luxemburg (http://www.caos-project.de/), soil moisture was measured at 21 sites with 3 soil moisture profiles each. These sites include grassland as well as forest on the one hand and cover different hillslope positions on the other hand. This setup allows us to study both vegetation and topographic effects. The spatio-temporal patterns of soil moisture were analysed using two approaches: 1) we examined temporal persistence of soil moisture patterns with rank stability plots and addressed the variability within and between sites for contrasting meteorological conditions. 2) In a next step we focused on specific hydrologic events: two periods during summer recession were distinguished, first the drying out of the soils during a period of no precipitation, but also the continuing decline even after summer rains have started. Furthermore, the soil moisture response to three different rainfall events was examined, varying in intensity and antecedent moisture conditions. The emerging contrasts in patterns were put into context of site-specific characteristics such as vegetation and topographical position to identify controls on soil moisture dynamics for our range of sites. Ultimately, linking similarity in soil moisture response in landscapes to these controls can elucidate the hydrological functioning of landscape units and thus facilitate modelling efforts.

  18. Temporal patterning of neuroblasts controls Notch-mediated cell survival through regulation of Hid or Reaper

    PubMed Central

    Bertet, Claire; Li, Xin; Erclik, Ted; Cavey, Matthieu; Wells, Brent; Desplan, Claude

    2014-01-01

    Temporal patterning of neural progenitors is one of the core mechanisms generating neuronal diversity in the central nervous system. Here, we show that in the tips of the outer proliferation center (tOPC) of the developing Drosophila optic lobes, a unique temporal series of transcription factors not only governs the sequential production of distinct neuronal subtypes, but also controls the mode of progenitor division as well as the selective apoptosis of NotchOFF or NotchON neurons during binary cell fate decisions. Within a single lineage, intermediate precursors initially do not divide and generate only one neuron; subsequently, precursors divide but their NotchON progeny systematically die through Reaper activity whereas later, their NotchOFF progeny die through Hid activity. These mechanisms dictate how the tOPC produces neurons for three different optic ganglia. We conclude that temporal patterning generates neuronal diversity by specifying both the identity and survival/death of each unique neuronal subtype. PMID:25171415

  19. Spatio-Temporal Pattern Analysis for Regional Climate Change Using Mathematical Morphology

    NASA Astrophysics Data System (ADS)

    Das, M.; Ghosh, S. K.

    2015-07-01

    Of late, significant changes in climate with their grave consequences have posed great challenges on humankind. Thus, the detection and assessment of climatic changes on a regional scale is gaining importance, since it helps to adopt adequate mitigation and adaptation measures. In this paper, we have presented a novel approach for detecting spatio-temporal pattern of regional climate change by exploiting the theory of mathematical morphology. At first, the various climatic zones in the region have been identified by using multifractal cross-correlation analysis (MF-DXA) of different climate variables of interest. Then, the directional granulometry with four different structuring elements has been studied to detect the temporal changes in spatial distribution of the identified climatic zones in the region and further insights have been drawn with respect to morphological uncertainty index and Hurst exponent. The approach has been evaluated with the daily time series data of land surface temperature (LST) and precipitation rate, collected from Microsoft Research - Fetch Climate Explorer, to analyze the spatio-temporal climatic pattern-change in the Eastern and North-Eastern regions of India throughout four quarters of the 20th century.

  20. Analysis of spatial and temporal water pollution patterns in Lake Dianchi using multivariate statistical methods.

    PubMed

    Yang, Yong-Hui; Zhou, Feng; Guo, Huai-Cheng; Sheng, Hu; Liu, Hui; Dao, Xu; He, Cheng-Jie

    2010-11-01

    Various multivariate statistical methods including cluster analysis (CA), discriminant analysis (DA), factor analysis (FA), and principal component analysis (PCA) were used to explain the spatial and temporal patterns of surface water pollution in Lake Dianchi. The dataset, obtained during the period 2003-2007 from the Kunming Environmental Monitoring Center, consisted of 12 variables surveyed monthly at eight sites. The CA grouped the 12 months into two groups, August-September and the remainder, and divided the lake into two regions based on their different physicochemical properties and pollution levels. The DA showed the best results for data reduction and pattern recognition in both temporal and spatial analysis. It calculated four parameters (TEMP, pH, CODMn, and Chl-a) to 85.4% correct assignment in the temporal analysis and three parameters (BOD, NH₄+-N, and TN) to almost 71.7% correct assignment in spatial analysis of the two clusters. The FA/PCA applied to datasets of two special clusters of the lake calculated four factors for each region, capturing 72.5% and 62.5% of the total variance, respectively. Strong loadings included DO, BOD, TN, CODCr, CODMn, NH₄+-N, TP, and EC. In addition, box-whisker plots and GIS further facilitated and supported the multivariate analysis results. PMID:19936953

  1. Temporal reiteration of a precise gene expression pattern during nematode development.

    PubMed Central

    Johnstone, I L; Barry, J D

    1996-01-01

    The nematode Caenorhabditis elegans is contained within a multifunctional exoskeleton, the cuticle, that contains a large number of distinct collagens. As the nematode proceeds from the egg through four larval stages to the adult, transition between larval stages is marked by synthesis of a new cuticle and subsequent moulting of the old one. This is a cyclically repeated developmental event, frequently described as the moulting cycle. We have examined the temporal expression of a group of six genes encoding distinct cuticular collagens. As expected, mRNA abundance for each of the six genes tested is found to oscillate, peaking once during each larval stage. Unexpectedly, the periods of abundance for each gene do not coincide, different genes being expressed at different times relative to one another within the moulting cycle. We detect a programme of temporally distinct waves of collagen gene expression, the precise pattern of which is repeated during each of the four larval stages. This multiphasic pattern of oscillating cuticular collagen gene expression indicates an unexpected complexity of temporal control during the nematode moulting cycle and has implications for collagen trimerization and cuticle synthesis. Images PMID:8670866

  2. Identification of neural firing patterns, frequency and temporal coding mechanisms in individual aortic baroreceptors

    PubMed Central

    Gu, Huaguang; Pan, Baobao

    2015-01-01

    In rabbit depressor nerve fibers, an on-off firing pattern, period-1 firing, and integer multiple firing with quiescent state were observed as the static pressure level was increased. A bursting pattern with bursts at the systolic phase of blood pressure, continuous firing, and bursting with burst at diastolic phase and quiescent state at systolic phase were observed as the mean level of the dynamic blood pressure was increased. For both static and dynamic pressures, the firing frequency of the first two firing patterns increased and of the last firing pattern decreased due to the quiescent state. If the quiescent state is disregarded, the spike frequency becomes an increasing trend. The instantaneous spike frequency of the systolic phase bursting, continuous firing, and diastolic phase bursting can reflect the temporal process of the systolic phase, whole procedure, and diastolic phase of the dynamic blood pressure signal, respectively. With increasing the static current corresponding to pressure level, the deterministic Hodgkin-Huxley (HH) model manifests a process from a resting state first to period-1 firing via a subcritical Hopf bifurcation and then to a resting state via a supercritical Hopf bifurcation, and the firing frequency increases. The on-off firing and integer multiple firing were here identified as noise-induced firing patterns near the subcritical and supercritical Hopf bifurcation points, respectively, using the stochastic HH model. The systolic phase bursting and diastolic phase bursting were identified as pressure-induced firings near the subcritical and supercritical Hopf bifurcation points, respectively, using an HH model with a dynamic signal. The firing, spike frequency, and instantaneous spike frequency observed in the experiment were simulated and explained using HH models. The results illustrate the dynamics of different firing patterns and the frequency and temporal coding mechanisms of aortic baroreceptor. PMID:26379539

  3. Deciphering principles of morphogenesis from temporal and spatial patterns on the integument

    PubMed Central

    Li, Ang; Lai, Yung-Chih; Figueroa, Seth; Yang, Tian; Widelitz, Randall B; Kobielak, Krzysztof; Nie, Qing; Chuong, Cheng Ming

    2015-01-01

    How tissue patterns form in development and regeneration is a fundamental issue remaining to be fully understood. The integument often forms repetitive units in space (periodic patterning) and time (cyclic renewal), such as feathers and hairs. Integument patterns are visible and experimentally manipulatable, helping us reveal pattern formative processes. Variability is seen in regional phenotypic specificities and temporal cycling at different physiological stages. Here we show some cellular / molecular bases revealed by analyzing integument patterns. 1) Localized cellular activity (proliferation, rearrangement, apoptosis, differentiation) transforms prototypic organ primordia into specific shapes. Combinatorial positioning of different localized activity zones generates diverse and complex organ forms. 2) Competitive equilibrium between activators and inhibitors regulates stem cells through cyclic quiescence and activation. Dynamic interactions between stem cells and their adjacent niche regulate regenerative behavior, modulated by multi-layers of macro-environmental factors (dermis, body hormone status and external environment). Genomics studies may reveal how positional information of localized cellular activity is stored. In vivo skin imaging and lineage tracing unveils new insights into stem cell plasticity. Principles of self-assembly obtained from the integumentary organ model can be applied to help restore damaged patterns during regenerative wound healing and for tissue engineering to rebuild tissues. PMID:25858668

  4. Modelling spatio-temporal patterns of long-distance Culicoides dispersal into northern Australia.

    PubMed

    Eagles, D; Walker, P J; Zalucki, M P; Durr, P A

    2013-07-01

    Novel arboviruses, including new serotypes of bluetongue virus, are isolated intermittently from cattle and insects in northern Australia. These viruses are thought to be introduced via windborne dispersal of Culicoides from neighbouring land masses to the north. We used the HYSPLIT particle dispersal model to simulate the spatio-temporal patterns of Culicoides dispersal into northern Australia from nine putative source sites across Indonesia, Timor-Leste and Papua New Guinea. Simulated dispersal was found to be possible from each site, with the islands of Timor and Sumba highlighted as the likely principal sources and February the predominant month of dispersal. The results of this study define the likely spatial extent of the source and arrival regions, the relative frequency of dispersal from the putative sources and the temporal nature of seasonal winds from source sites into arrival regions. Importantly, the methodology and results may be applicable to other insect and pathogen incursions into northern Australia. PMID:23642857

  5. Temporal phase-unwrapping of static surfaces with 2-sensitivity fringe-patterns.

    PubMed

    Servin, Manuel; Padilla, J M; Gonzalez, Adonai; Garnica, Guillermo

    2015-06-15

    Here we describe a 2-step temporal phase unwrapping formula that uses 2-sensitivity demodulated phases for measuring static surfaces. The first phase demodulation has at most 1-wavelength sensitivity and the second one is G-times (G>1.0) more sensitive. Measuring static surfaces with 2-sensitivity fringe patterns is well known and recent published methods combine 2-sensitivities measurements mostly by triangulation. Two important applications for our 2-step unwrapping algorithm is profilometry and synthetic aperture radar (SAR) interferometry. In these two applications the object or surface being analyzed is static and highly discontinuous; so temporal unwrapping is the best strategy to follow. Phase-demodulation in profilometry and SAR interferometry is very similar because both share similar mathematical models. PMID:26193559

  6. Diverse spatio-temporal dynamical patterns of p53 and cell fate decisions

    NASA Astrophysics Data System (ADS)

    Clairambault, Jean; Eliaš, Ján

    2016-06-01

    The protein p53 as a tumour suppressor protein accumulates in cells in response to DNA damage and transactivates a large variety of genes involved in apoptosis, cell cycle regulation and numerous other processes. Recent biological observations suggest that specific spatio-temporal dynamical patterns of p53 may be associated with specific cellular response, and thus the spatio-temporal heterogeneity of the p53 dynamics contributes to the overall complexity of p53 signalling. Reaction-diffusion equations taking into account spatial representation of the cell and motion of the species inside the cell can be used to model p53 protein network and could be thus of some help to biologists and pharmacologists in anticancer treatment.

  7. Comparison of real-time phase-reconstruction methods in temporal speckle-pattern interferometry.

    PubMed

    Etchepareborda, Pablo; Bianchetti, Arturo; Veiras, Francisco E; Vadnjal, Ana Laura; Federico, Alejandro; Kaufmann, Guillermo H

    2015-09-01

    Three real-time methods for object-phase recovery are implemented and compared in temporal speckle-pattern interferometry. Empirical mode and intrinsic time-scale decompositions are used and compared as real-time nonstationary and nonlinear filtering techniques for the extraction of the spatio-temporal evolution of the object phase. The proposed real-time methods avoid the application of the Hilbert transform and improve the accuracy of the measurement by filtering under-modulated pixels using Delaunay triangulation. The performance of the proposed methods is evaluated by comparing phase-recovery accuracy and computation time by means of numerical simulations and experimental data obtained from common and simultaneous π/2 phase-shifting heterodyne interferometry. PMID:26368890

  8. Temporal and spatial patterns in vegetation and atmospheric properties from AVIRIS

    SciTech Connect

    Roberts, D.A.; Green, R.O.; Adams, J.B.

    1997-12-01

    Little research has focused on the use of imaging spectrometry for change detection. In this paper, the authors apply Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data to the monitoring of seasonal changes in atmospheric water vapor, liquid water, and surface cover in the vicinity of the Jasper Ridge, CA, for three dates in 1992. Apparent surface reflectance was retrieved and water vapor and liquid water mapped by using a radiative-transfer-based inversion that accounts for spatially variable atmospheres. Spectral mixture analysis (SMA) was used to model reflectance data as mixtures of green vegetation (GV), nonphotosynthetic vegetation (NPV), soil, and shade. Temporal and spatial patterns in endmember fractions and liquid water were compared to the normalized difference vegetation index (NDVI). The reflectance retrieval algorithm was tested by using a temporally invariant target.

  9. Spatial and Temporal Patterns of Carbon Storage in Forest Ecosystems on Hainan Island, Southern China

    PubMed Central

    Tang, Xuli; Zhang, Qianmei; Wang, Dong; Yuan, Lianlian; Chen, Xubing

    2014-01-01

    Spatial and temporal patterns of carbon (C) storage in forest ecosystems significantly affect the terrestrial C budget, but such patterns are unclear in the forests in Hainan Province, the largest tropical island in China. Here, we estimated the spatial and temporal patterns of C storage from 1993–2008 in Hainan's forest ecosystems by combining our measured data with four consecutive national forest inventories data. Forest coverage increased from 20.7% in the 1950s to 56.4% in the 2010s. The average C density of 163.7 Mg C/ha in Hainan's forest ecosystems in this study was slightly higher than that of China's mainland forests, but was remarkably lower than that in the tropical forests worldwide. Total forest ecosystem C storage in Hainan increased from 109.51 Tg in 1993 to 279.17 Tg in 2008. Soil C accounted for more than 70% of total forest ecosystem C. The spatial distribution of forest C storage in Hainan was uneven, reflecting differences in land use change and forest management. The potential carbon sequestration of forest ecosystems was 77.3 Tg C if all forested lands were restored to natural tropical forests. To increase the C sequestration potential on Hainan Island, future forest management should focus on the conservation of natural forests, selection of tree species, planting of understory species, and implementation of sustainable practices. PMID:25229628

  10. Temporal changes of spatial soil moisture patterns: controlling factors explained with a multidisciplinary approach

    NASA Astrophysics Data System (ADS)

    Martini, Edoardo; Wollschläger, Ute; Kögler, Simon; Behrens, Thorsten; Dietrich, Peter; Reinstorf, Frido; Schmidt, Karsten; Weiler, Markus; Werban, Ulrike; Zacharias, Steffen

    2016-04-01

    Characterizing the spatial patterns of soil moisture is critical for hydrological and meteorological models, as soil moisture is a key variable that controls matter and energy fluxes and soil-vegetation-atmosphere exchange processes. Deriving detailed process understanding at the hillslope scale is not trivial, because of the temporal variability of local soil moisture dynamics. Nevertheless, it remains a challenge to provide adequate information on the temporal variability of soil moisture and its controlling factors. Recent advances in wireless sensor technology allow monitoring of soil moisture dynamics with high temporal resolution at varying scales. In addition, mobile geophysical methods such as electromagnetic induction (EMI) have been widely used for mapping soil water content at the field scale with high spatial resolution, as being related to soil apparent electrical conductivity (ECa). The objective of this study was to characterize the spatial and temporal pattern of soil moisture at the hillslope scale and to infer the controlling hydrological processes, integrating well established and innovative sensing techniques, as well as new statistical methods. We combined soil hydrological and pedological expertise with geophysical measurements and methods from digital soil mapping for designing a wireless soil moisture monitoring network. For a hillslope site within the Schäfertal catchment (Central Germany), soil water dynamics were observed during 14 months, and soil ECa was mapped on seven occasions whithin this period of time using an EM38-DD device. Using the Spearman rank correlation coefficient, we described the temporal persistence of a dry and a wet characteristic state of soil moisture as well as the switching mechanisms, inferring the local properties that control the observed spatial patterns and the hydrological processes driving the transitions. Based on this, we evaluated the use of EMI for mapping the spatial pattern of soil moisture under

  11. TEMPORAL PATTERNS IN THREE-DIMENSIONAL STRUCTURE AND ACTIVITY OF SCHOOLS OF THE ATLANTIC SILVERSIDE 'MENIDIA MENIDIA'

    EPA Science Inventory

    Temporal patterns in the structure and activity of schools of the Atlantic silverside Menidia menidia were investigated under laboratory conditions using a new computerized video technique for three-dimensional analysis. Fish were collected by seining at Middle Bridge, Pettaquans...

  12. Temporal rainfall patterns with water partitioning impacts on maize yield in a freeze-thaw zone

    NASA Astrophysics Data System (ADS)

    Hao, Fanghua; Chen, Siyang; Ouyang, Wei; Shan, Yushu; Qi, Shasha

    2013-04-01

    SummaryUnderstanding all components of the water balance, especially temporal rainfall patterns, is essential to optimize water use in rain-fed agriculture area. The effect of temporal rainfall patterns on water balance, evapotranspiration (ET), and crop growth was evaluated by considering root water extraction of plants in a rain-fed maize field. Soil water contents at depths of 15, 30, 60, and 90 cm were measured daily in 2-year growth seasons. A soil water balance approach was applied to estimate changes in daily soil water storage. For the detailed water partitioning of the water balance and root water extraction, the soil-water-atmosphere-plant (SWAP) model with water and crop modules was applied. Results suggested that the main depths of root water uptake occurred in the top 60 cm soil layer. Crop transpiration (T) can reach a level above 40% of the total water consumption during all growth stages, and its reduction was mainly due to the dry condition of soil. The crop yield in 2010 was 1125 kg ha-1 higher than that in 2011, although the rainfall amount in that year was 132 mm less than the rainfall amount in 2011. The water use efficiency (WUE) was also higher in 2010. Therefore, the influence of temporal rainfall patterns was clearly more important than rainfall amounts (water partitioning into evaporation (E), T, and soil water content). Growing season T/ET can be a potential parameter for maize productivity. The field can be irrigated at pivotal growth stages under dry conditions to obtain the optimal effect in improving WUE and increasing grain yield. The SWAP model was a useful tool to analyze water partitioning in the freeze-thaw zone.

  13. Spatio-temporal foraging patterns of a giant zooplanktivore, the leatherback turtle

    NASA Astrophysics Data System (ADS)

    Fossette, Sabrina; Hobson, Victoria J.; Girard, Charlotte; Calmettes, Beatriz; Gaspar, Philippe; Georges, Jean-Yves; Hays, Graeme C.

    2010-05-01

    Understanding food web functioning through the study of natural bio-indicators may constitute a valuable and original approach. In the context of jellyfish proliferation in many overexploited marine ecosystems studying the spatio-temporal foraging patterns of the giant "jellyvore" leatherback turtle turns out to be particularly relevant. Here we analyzed long-term tracking data to assess spatio-temporal foraging patterns in 21 leatherback turtles during their pluri-annual migration in the Northern Atlantic. Through an analytical approach based on the animal's own motion (independent of currents) and diving behavior distinct zones of high and low foraging success were identified. High foraging success occurred in a sub-equatorial zone spanning the width of the Atlantic and at high (>30°N) latitudes. Between these zones in the centre of North Atlantic gyre there was low foraging success. This "ocean desert" area was traversed at high speed by leatherbacks on their way to more productive areas at higher latitudes. Animals traveled slowly in high foraging success areas and dived shallower (17.2 ± 8.0 km day - 1 and 53.6 ± 33.1 m mean ± SD respectively) than in low foraging success areas (51.0 ± 13.1 km day - 1 and 81.8 ± 56.2 m mean ± SD respectively). These spatio-temporal foraging patterns seem to relatively closely match the main features of the integrated meso-zooplankton distribution in the North Atlantic. Our method of defining high foraging success areas is intuitive and relatively easy to implement but also takes into account the impact of oceanic currents on animal's behavior.

  14. Assessing Temporal and Spatial Patterns of Observed and Predicted Ozone in Multiple Urban Areas

    PubMed Central

    Simon, Heather; Wells, Benjamin; Baker, Kirk R.; Hubbell, Bryan

    2016-01-01

    Background: Ambient monitoring data show spatial gradients in ozone (O3) across urban areas. Nitrogen oxide (NOx) emissions reductions will likely alter these gradients. Epidemiological studies often use exposure surrogates that may not fully account for the impacts of spatially and temporally changing concentrations on population exposure. Objectives: We examined the impact of large NOx decreases on spatial and temporal O3 patterns and the implications on exposure. Methods: We used a photochemical model to estimate O3 response to large NOx reductions. We derived time series of 2006–2008 O3 concentrations consistent with 50% and 75% NOx emissions reduction scenarios in three urban areas (Atlanta, Philadelphia, and Chicago) at each monitor location and spatially interpolated O3 to census-tract centroids. Results: We predicted that low O3 concentrations would increase and high O3 concentrations would decrease in response to NOx reductions within an urban area. O3 increases occurred across larger areas for the seasonal mean metric than for the regulatory metric (annual 4th highest daily 8-hr maximum) and were located only in urban core areas. O3 always decreased outside the urban core (e.g., at locations of maximum local ozone concentration) for both metrics and decreased within the urban core in some instances. NOx reductions led to more uniform spatial gradients and diurnal and seasonal patterns and caused seasonal peaks in midrange O3 concentrations to shift from midsummer to earlier in the year. Conclusions: These changes have implications for how O3 exposure may change in response to NOx reductions and are informative for the design of future epidemiology studies and risk assessments. Citation: Simon H, Wells B, Baker KR, Hubbell B. 2016. Assessing temporal and spatial patterns of observed and predicted ozone in multiple urban areas. Environ Health Perspect 124:1443–1452; http://dx.doi.org/10.1289/EHP190 PMID:27153213

  15. The impact of spatial and temporal patterns on multi-cellular behavior

    NASA Astrophysics Data System (ADS)

    Nikolic, Djordje L.

    What makes a fruit fly a fruit fly? Essentially this question stems from one of the most fascinating problems in biology: how a single cell (fertilized egg) can give rise to a fully grown animal. To be able to answer this question, the importance to how spatial and temporal patterns of gene and protein expression influence the development of an organism must be understood. After all, fruit fly larvae are segmented, while fertilized eggs are not. Pattern formation is fundamental to establishing this organization of the developing embryo with the ultimate goal being the precise arrangements of specialized cells and tissues within each organ in an adult organism. The research presented here showcases the examples of studies that assess the impact spatial and temporal protein patterns have on the behavior of a collection of cells. By introducing new experimental, non-traditional techniques we developed model systems that allowed us to examine the dependence of the strength of adhesion of cells on the protein organization on sub-cellular, micron length scales, and to investigate how epithelial cell sheets coordinate their migration incorporating individual cell locomotion, molecular signal propagation and different boundary conditions. The first part of this dissertation presents a photolithography-based silanization patterning technique that allowed us to homogeneously pattern large areas with high precision. This method is then applied to organizing cell adhesion-promoting proteins on surfaces for the purposes of studying and manipulating cell behavior. We show how the strength of adhesion is dependent on high local density of an adhesive extracellular matrix protein fibronectin. The varied appeal of this technique is exhibited by showing its applicability to pattern stretched DNA, too. The second part of this dissertation focuses on the impact of spatial and temporal propagation of a molecular signal (ERK 1/2 MAPK) in migrating epithelial sheets during wound healing

  16. A polarized digital shearing speckle pattern interferometry system based on temporal wavelet transformation.

    PubMed

    Feng, Ziang; Gao, Zhan; Zhang, Xiaoqiong; Wang, Shengjia; Yang, Dong; Yuan, Hao; Qin, Jie

    2015-09-01

    Digital shearing speckle pattern interferometry (DSSPI) has been recognized as a practical tool in testing strain. The DSSPI system which is based on temporal analysis is attractive because of its ability to measure strain dynamically. In this paper, such a DSSPI system with Wollaston prism has been built. The principles and system arrangement are described and the preliminary experimental result of the displacement-derivative test of an aluminum plate is shown with the wavelet transformation method and the Fourier transformation method. The simulations have been conducted with the finite element method. The comparison of the results shows that quantitative measurement of displacement-derivative has been realized. PMID:26429424

  17. Hierarchies and logarithmic oscillations in the temporal relaxation patterns of proteins and other complex systems

    PubMed Central

    Metzler, Ralf; Klafter, Joseph; Jortner, Joshua

    1999-01-01

    Logarithmic oscillations superimposed on the temporal relaxation patterns of complex systems are considered from the standpoint of their hierarchical origin. We propose that a closer examination of experimental data should reveal logarithmic oscillations in systems that are characterized by a hierarchical structure of their dynamical degrees of freedom. On that footing, a new methodology of data analysis is proposed that may prove important for the dynamics of protein folding and of conformational fluctuations in proteins in which the relevant time scales of the dynamical evolution underlying the relaxation kinetics can be deduced from these oscillations. PMID:10500133

  18. Spatial and temporal patterns of drought in the Continental U.S. during the past century

    NASA Astrophysics Data System (ADS)

    Ge, Yan; Apurv, Tushar; Cai, Ximing

    2016-06-01

    This study investigates the spatial and temporal patterns of multiple drought characteristics (duration, severity, and intensity) under different return periods during 1900-2012 in the Continental U.S. (CONUS). We find two significant patterns: Pattern I shows persistent droughts in western and eastern U.S. and the Great Plains, which experienced large variations in the drought characteristics over long time; Pattern II shows transient droughts in the interior of CONUS, which experienced short-term variations in drought characteristics. Trend analysis shows that duration, severity, and intensity of droughts under the various return periods are increasing in most of the Pattern I regions. Moreover, spatial distributions of duration, severity, and intensity of more frequent and less severe drought events are found to be different from those of less frequent and more severe droughts in the same time period; trends in these drought characteristics at long and short return periods are different at some locations, showing the different trends of extreme and mild droughts.

  19. Global Spatio-temporal Patterns of Influenza in the Post-pandemic Era

    NASA Astrophysics Data System (ADS)

    He, Daihai; Lui, Roger; Wang, Lin; Tse, Chi Kong; Yang, Lin; Stone, Lewi

    2015-06-01

    We study the global spatio-temporal patterns of influenza dynamics. This is achieved by analysing and modelling weekly laboratory confirmed cases of influenza A and B from 138 countries between January 2006 and January 2015. The data were obtained from FluNet, the surveillance network compiled by the the World Health Organization. We report a pattern of skip-and-resurgence behavior between the years 2011 and 2013 for influenza H1N1pdm, the strain responsible for the 2009 pandemic, in Europe and Eastern Asia. In particular, the expected H1N1pdm epidemic outbreak in 2011/12 failed to occur (or “skipped”) in many countries across the globe, although an outbreak occurred in the following year. We also report a pattern of well-synchronized wave of H1N1pdm in early 2011 in the Northern Hemisphere countries, and a pattern of replacement of strain H1N1pre by H1N1pdm between the 2009 and 2012 influenza seasons. Using both a statistical and a mechanistic mathematical model, and through fitting the data of 108 countries, we discuss the mechanisms that are likely to generate these events taking into account the role of multi-strain dynamics. A basic understanding of these patterns has important public health implications and scientific significance.

  20. Global Spatio-temporal Patterns of Influenza in the Post-pandemic Era

    PubMed Central

    He, Daihai; Lui, Roger; Wang, Lin; Tse, Chi Kong; Yang, Lin; Stone, Lewi

    2015-01-01

    We study the global spatio-temporal patterns of influenza dynamics. This is achieved by analysing and modelling weekly laboratory confirmed cases of influenza A and B from 138 countries between January 2006 and January 2015. The data were obtained from FluNet, the surveillance network compiled by the the World Health Organization. We report a pattern of skip-and-resurgence behavior between the years 2011 and 2013 for influenza H1N1pdm, the strain responsible for the 2009 pandemic, in Europe and Eastern Asia. In particular, the expected H1N1pdm epidemic outbreak in 2011/12 failed to occur (or “skipped”) in many countries across the globe, although an outbreak occurred in the following year. We also report a pattern of well-synchronized wave of H1N1pdm in early 2011 in the Northern Hemisphere countries, and a pattern of replacement of strain H1N1pre by H1N1pdm between the 2009 and 2012 influenza seasons. Using both a statistical and a mechanistic mathematical model, and through fitting the data of 108 countries, we discuss the mechanisms that are likely to generate these events taking into account the role of multi-strain dynamics. A basic understanding of these patterns has important public health implications and scientific significance. PMID:26046930

  1. Temporal asymmetries in the feeding patterns along the tidal cycle in two sympatric littoral blennies

    NASA Astrophysics Data System (ADS)

    Faria, C.; Almada, V. C.

    2008-09-01

    The temporal patterns of feeding activity of Lipophrys pholis and Coryphoblennius galerita were studied by snorkelling dives during high-waters. The feeding activity was especially intense during the rising-tide when compared to the ebbing-tide. The relative abundances of C. galerita and small L. pholis observed on rock-walls were higher during the rising- and high-tide. However, L. pholis larger than 7-8 cm showed higher relative abundance on rock-walls during the ebbing phase, apparently because they move up and down with the tide, and many individuals were in their downward movements as the tide ebbs. It is hypothesized that the asymmetry in feeding pattern observed in both species reflects a trade off between two conflicting needs, maximizing feeding time and reaching their low-tide shelters in time, avoiding the risk of getting stranded in unsuitable locations.

  2. Trend and uncertainty in spatial-temporal patterns of hydrological droughts in the Amazon basin

    NASA Astrophysics Data System (ADS)

    Lopes, A. V.; Chiang, J. C. H.; Thompson, S. A.; Dracup, J. A.

    2016-04-01

    Spatial-temporal patterns of hydrological droughts in the Amazon basin are derived from drought indices computed from existing streamflow data. Principal component analysis and Monte Carlo simulations are employed to account for the uncertainty and overcome the limitations of missing data in streamflow records. Results show that northern and southern subbasins differ in drought trends and in patterns of correlation between drought indices and climate anomalies originating from the Pacific (El Niño-Southern Oscillation) and Atlantic (differences in sea surface temperature across the equator) Oceans. A significant trend toward more intense droughts is found in the southern subbasins, which is highly correlated to tropical Atlantic Ocean sea surface temperature anomalies. That drying trend might have distinct causes in each subbasin and can lead to potential intensification of regional impacts.

  3. Spatio-temporal dynamics of the white-eye square superlattice pattern in dielectric barrier discharge

    NASA Astrophysics Data System (ADS)

    Wei, Lingyan; Dong, Lifang; Feng, Jianyu; Liu, Weibo; Fan, Weili; Pan, Yuyang

    2016-05-01

    We report on the first investigation of the white-eye square superlattice pattern (WESSP) in a dielectric barrier discharge system. The evolution of patterns with increasing voltage is given. A phase diagram of WESSP as functions of gas pressure p and argon concentration φ is presented. The spatio-temporal dynamics of the WESSP is studied by using an intensified charge-coupled device camera and photomultipliers. Results show that the WESSP consists of four different transient sublattices, whose discharge sequence is small spots—spots on the line—halos—central spots in each half voltage cycle. The discharge moment and position of each sublattice are dependent upon the field of the wall charges produced by all sublattices discharged previously.

  4. Spatial and temporal patterns of dengue in Guangdong province of China.

    PubMed

    Wang, Chenggang; Yang, Weizhong; Fan, Jingchun; Wang, Furong; Jiang, Baofa; Liu, Qiyong

    2015-03-01

    The aim of the study was to describe the spatial and temporal patterns of dengue in Guangdong for 1978 to 2010. Time series analysis was performed using data on annual dengue incidence in Guangdong province for 1978-2010. Annual average dengue incidences for each city were mapped for 4 periods by using the geographical information system (GIS). Hot spot analysis was used to identify spatial patterns of dengue cases for 2005-2010 by using the CrimeStat III software. The incidence of dengue in Guangdong province had fallen steadily from 1978 to 2010. The time series was a random sequence without regularity and with no fixed cycle. The geographic range of dengue fever had expanded from 1978 to 2010. Cases were mostly concentrated in Zhanjiang and the developed regions of Pearl River Delta and Shantou. PMID:23467628

  5. Frequent visitors to psychiatric emergency services: staff attitudes and temporal patterns.

    PubMed

    Arfken, Cynthia; Zeman, Lori Lackman; Yeager, Lindsay; Mischel, Edward; Amirsadri, Alireza

    2002-11-01

    Providing quality psychiatric emergency services is becoming more difficult as utilization rates soar, especially by individuals who are frequent visitors. To address this issue, a staff survey and analysis of admission patterns were conducted. Staff were more likely to believe that frequent visitors sought care because they had difficulty accessing alternative services, had basic needs unmet, were substance abusers, wanted inpatient admission, and were noncompliant with treatment plans. The 1999 temporal admission pattern documented that frequent visitors' admissions were higher during the first week of the month and inclement weather. Surprisingly, the infrequent visitors' admissions also were higher during the first week of the month. Together, these findings suggest that, in this urban location, frequent visitors are disadvantaged individuals lacking support and alternative treatment settings who use psychiatric emergency services to meet basic needs. PMID:12404943

  6. Altered temporal patterns of anxiety in aged and amyloid precursor protein (APP) transgenic mice

    PubMed Central

    Bedrosian, Tracy A.; Herring, Kamillya L.; Weil, Zachary M.; Nelson, Randy J.

    2011-01-01

    Both normal aging and dementia are associated with dysregulation of the biological clock, which contributes to disrupted circadian organization of physiology and behavior. Diminished circadian organization in conjunction with the loss of cholinergic input to the cortex likely contributes to impaired cognition and behavior. One especially notable and relatively common circadian disturbance among the aged is “sundowning syndrome,” which is characterized by exacerbated anxiety, agitation, locomotor activity, and delirium during the hours before bedtime. Sundowning has been reported in both dementia patients and cognitively intact elderly individuals living in institutions; however, little is known about temporal patterns in anxiety and agitation, and the neurobiological basis of these rhythms remains unspecified. In the present study, we explored the diurnal pattern of anxiety-like behavior in aged and amyloid precursor protein (APP) transgenic mice. We then attempted to treat the observed behavioral disturbances in the aged mice using chronic nightly melatonin treatment. Finally, we tested the hypothesis that time-of-day differences in acetylcholinesterase and choline acetyltransferase expression and general neuronal activation (i.e., c-Fos expression) coincide with the behavioral symptoms. Our results show a temporal pattern of anxiety-like behavior that emerges in elderly mice. This behavioral pattern coincides with elevated locomotor activity relative to adult mice near the end of the dark phase, and with time-dependent changes in basal forebrain acetylcholinesterase expression. Transgenic APP mice show a similar behavioral phenomenon that is not observed among age-matched wild-type mice. These results may have useful applications to the study and treatment of age- and dementia-related circadian behavioral disturbances, namely, sundowning syndrome. PMID:21709248

  7. A framework for the assessment of the spatial and temporal patterns of threatened coastal delphinids

    NASA Astrophysics Data System (ADS)

    Wang, Jingzhen; Yang, Yingting; Yang, Feng; Li, Yuelin; Li, Lianjie; Lin, Derun; He, Tangtian; Liang, Bo; Zhang, Tao; Lin, Yao; Li, Ping; Liu, Wenhua

    2016-01-01

    The massively accelerated biodiversity loss rate in the Anthropocene calls for an efficient and effective way to identify the spatial and temporal dynamics of endangered species. To this end, we developed a useful identification framework based on a case study of locally endangered Sousa chinensis by combining both LEK (local ecological knowledge) evaluation and regional boat-based survey methods. Our study investigated the basic ecological information of Sousa chinensis in the estuaries of eastern Guangdong that had previously been neglected, which could guide the future study and conservation. Based on the statistical testing of reported spatial and temporal dolphins sighting data from fishermen and the ecological monitoring analyses, including sighting rate, site fidelity and residence time estimations, some of the current Sousa chinensis units are likely to be geographically isolated and critically endangered, which calls for much greater conservation efforts. Given the accelerated population extinction rate and increasing budgetary constraints, our survey pattern can be applied in a timely and economically acceptable manner to the spatial and temporal assessment of other threatened coastal delphinids, particularly when population distributions are on a large scale and traditional sampling methods are difficult to implement.

  8. Knowledge-level querying of temporal patterns in clinical research systems.

    PubMed

    O'Connor, Martin J; Shankar, Ravi D; Parrish, David B; Das, Amar K

    2007-01-01

    Managing time-stamped data is essential to clinical research activities and often requires the use of considerable domain knowledge. Adequately representing this domain knowledge is difficult in relational database systems. As a result, there is a need for principled methods to overcome the disconnect between the database representation of time-oriented research data and corresponding knowledge of domain-relevant concepts. In this paper, we present a set of methodologies for undertaking knowledge level querying of temporal patterns, and discuss its application to the verification of temporal constraints in clinical-trial applications. Our approach allows knowledge generated from query results to be tied to the data and, if necessary, used for further inference. We show how the Semantic Web ontology and rule languages, OWL and SWRL, respectively, can support the temporal knowledge model needed to integrate low-level representations of relational data with high-level domain concepts used in research data management. We present a scalable bridge-based software architecture that uses this knowledge model to enable dynamic querying of time-oriented research data. PMID:17911729

  9. A framework for the assessment of the spatial and temporal patterns of threatened coastal delphinids.

    PubMed

    Wang, Jingzhen; Yang, Yingting; Yang, Feng; Li, Yuelin; Li, Lianjie; Lin, Derun; He, Tangtian; Liang, Bo; Zhang, Tao; Lin, Yao; Li, Ping; Liu, Wenhua

    2016-01-01

    The massively accelerated biodiversity loss rate in the Anthropocene calls for an efficient and effective way to identify the spatial and temporal dynamics of endangered species. To this end, we developed a useful identification framework based on a case study of locally endangered Sousa chinensis by combining both LEK (local ecological knowledge) evaluation and regional boat-based survey methods. Our study investigated the basic ecological information of Sousa chinensis in the estuaries of eastern Guangdong that had previously been neglected, which could guide the future study and conservation. Based on the statistical testing of reported spatial and temporal dolphins sighting data from fishermen and the ecological monitoring analyses, including sighting rate, site fidelity and residence time estimations, some of the current Sousa chinensis units are likely to be geographically isolated and critically endangered, which calls for much greater conservation efforts. Given the accelerated population extinction rate and increasing budgetary constraints, our survey pattern can be applied in a timely and economically acceptable manner to the spatial and temporal assessment of other threatened coastal delphinids, particularly when population distributions are on a large scale and traditional sampling methods are difficult to implement. PMID:26804347

  10. A framework for the assessment of the spatial and temporal patterns of threatened coastal delphinids

    PubMed Central

    Wang, Jingzhen; Yang, Yingting; Yang, Feng; Li, Yuelin; Li, Lianjie; Lin, Derun; He, Tangtian; Liang, Bo; Zhang, Tao; Lin, Yao; Li, Ping; Liu, Wenhua

    2016-01-01

    The massively accelerated biodiversity loss rate in the Anthropocene calls for an efficient and effective way to identify the spatial and temporal dynamics of endangered species. To this end, we developed a useful identification framework based on a case study of locally endangered Sousa chinensis by combining both LEK (local ecological knowledge) evaluation and regional boat-based survey methods. Our study investigated the basic ecological information of Sousa chinensis in the estuaries of eastern Guangdong that had previously been neglected, which could guide the future study and conservation. Based on the statistical testing of reported spatial and temporal dolphins sighting data from fishermen and the ecological monitoring analyses, including sighting rate, site fidelity and residence time estimations, some of the current Sousa chinensis units are likely to be geographically isolated and critically endangered, which calls for much greater conservation efforts. Given the accelerated population extinction rate and increasing budgetary constraints, our survey pattern can be applied in a timely and economically acceptable manner to the spatial and temporal assessment of other threatened coastal delphinids, particularly when population distributions are on a large scale and traditional sampling methods are difficult to implement. PMID:26804347

  11. Different response patterns between auditory spectral and spatial temporal order judgment (TOJ).

    PubMed

    Fostick, Leah; Babkoff, Harvey

    2013-01-01

    Temporal order judgment (TOJ) thresholds have been widely reported as valid estimates of the temporal disparity necessary for correctly identifying the order of two stimuli. Data for two auditory TOJ paradigms are often reported in the literature: (1) spatially-based TOJ in which the order of presentation of the same stimulus to the right and left ear differs; and (2) spectrally-based TOJ in which the order of two stimuli differing in frequency is presented to one ear or to both ears simultaneously. Since the thresholds reported using the two paradigms differ, the aim of the current study was to compare their response patterns. The results from three different experiments showed that: (1) while almost none of the participants were able to perform the spatial TOJ task when ISI = 5 ms, with the spectral task, 50% reached an accuracy level of 75% when ISI = 5 ms; (2) temporal separation was only a partial predictor for performance in the spectral task, while it fully predicted performance in the spatial task; and (3) training improved performance markedly in the spectral TOJ task, but had no effect on spatial TOJ. These results suggest that the two paradigms may reflect different perceptual mechanisms. PMID:23820944

  12. Spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks

    NASA Astrophysics Data System (ADS)

    McGlynn, B. L.; Jencso, K. G.; Nippgen, F.; Emanuel, R. E.; Marshall, L. A.; Gooseff, M. N.

    2012-12-01

    Congress enacted the Clean Water Act (CWA) "to restore and maintain the chemical, physical, and biological integrity of the Nation's waters". A recent Supreme Court decision further described protection for waters with "a significant nexus to navigable waters" if they are in the same watershed and have an effect on the chemical, physical, or biological integrity of traditional navigable waters or interstate waters that is more than "speculative or insubstantial." Evolving interpretation of the CWA and "significant nexus" (connectivity) requires investigation and understanding of the spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks that mediate streamflow magnitude and composition. While, hydrologic connectivity is a continuum, strong non-linearities including the shift from unsaturated to saturated flow conditions lead to threshold or transient connectivity behavior and orders of magnitude changes in flow velocities. Here we illustrate the spatial and temporal dynamics of hydrologic connectivity between upland landscapes and stream networks that provide direct and proximate links between streamflow composition and its watershed sources. New understanding and communication of the temporal and spatial scales of watershed connectivity are required to address urgent needs at the interface of the CWA, science, and society.

  13. Spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks (Invited)

    NASA Astrophysics Data System (ADS)

    Ma, L.; Qi, Z.; Helmers, M. J.; Ahuja, L. R.; Malone, R. W.

    2011-12-01

    Congress enacted the Clean Water Act (CWA) 'to restore and maintain the chemical, physical, and biological integrity of the Nation's waters'. A recent Supreme Court decision further described protection for waters with 'a significant nexus to navigable waters" if they are in the same watershed and have an effect on the chemical, physical, or biological integrity of traditional navigable waters or interstate waters that is more than 'speculative or insubstantial.' Evolving interpretation of the CWA and 'significant nexus' (connectivity) requires investigation and understanding of the spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks that mediate streamflow magnitude and composition. While hydrologic connectivity is a continuum, strong non-linearities including the shift from unsaturated to saturated flow conditions lead to threshold or transient connectivity behavior and orders of magnitude changes in flow velocities and source water compositions. Here we illustrate the spatial and temporal dynamics of hydrologic connectivity between upland landscapes and stream networks that provide direct and proximate links between streamflow composition and its watershed sources. We suggest that adjacency alone does not determine influence on hydrologic response and streamwater composition and that new understanding and communication of the temporal and spatial dynamics of watershed connectivity are required to address urgent needs at the interface of the CWA, science, and society.

  14. Spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks (Invited)

    NASA Astrophysics Data System (ADS)

    McGlynn, B. L.; Nippgen, F.; Jencso, K. G.; Emanuel, R. E.

    2013-12-01

    Congress enacted the Clean Water Act (CWA) 'to restore and maintain the chemical, physical, and biological integrity of the Nation's waters'. A recent Supreme Court decision further described protection for waters with 'a significant nexus to navigable waters" if they are in the same watershed and have an effect on the chemical, physical, or biological integrity of traditional navigable waters or interstate waters that is more than 'speculative or insubstantial.' Evolving interpretation of the CWA and 'significant nexus' (connectivity) requires investigation and understanding of the spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks that mediate streamflow magnitude and composition. While hydrologic connectivity is a continuum, strong non-linearities including the shift from unsaturated to saturated flow conditions lead to threshold or transient connectivity behavior and orders of magnitude changes in flow velocities and source water compositions. Here we illustrate the spatial and temporal dynamics of hydrologic connectivity between upland landscapes and stream networks that provide direct and proximate links between streamflow composition and its watershed sources. We suggest that adjacency alone does not determine influence on hydrologic response and streamwater composition and that new understanding and communication of the temporal and spatial dynamics of watershed connectivity are required to address urgent needs at the interface of the CWA, science, and society.

  15. Spatial and temporal patterns in civil violence: Guatemala, 1977-1986.

    PubMed

    Gulden, Timothy R

    2002-03-01

    Civil violence is a complex and often horrific phenomenon whose characteristics have varied by era, setting, and circumstance. Its objective analysis has rarely been feasible at spatial and temporal scales great enough and resolutions fine enough to reveal patterns useful in prevention, intervention, or adjudication. An extraordinary data set simultaneously meeting scale and resolution criteria was collected during conflict in Guatemala from 1977 through 1986. Reported here is its spatial-temporal analysis; reported as well is a putatively novel method for estimating power-law exponents from aggregate data. Analysis showed that the relationship between ethnic mix and killing was smooth yet highly nonlinear, that the temporal texture of killings was rough, and that the distribution of killing-event sizes was dichotomous, with nongenocidal and genocidal conflict periods displaying Zipf and non-Zipf distributions, respectively. These results add statistical support to claims that the Guatemalan military operated under at least two directives with respect to killing and that one of these effected a genocidal campaign against an indigenous people, the Mayans. Implications for group-behavioral modeling, conflict prevention, peace-keeping intervention, human-rights monitoring, and transitional justice are noted. PMID:16859341

  16. Dynamic evolving spiking neural networks for on-line spatio- and spectro-temporal pattern recognition.

    PubMed

    Kasabov, Nikola; Dhoble, Kshitij; Nuntalid, Nuttapod; Indiveri, Giacomo

    2013-05-01

    On-line learning and recognition of spatio- and spectro-temporal data (SSTD) is a very challenging task and an important one for the future development of autonomous machine learning systems with broad applications. Models based on spiking neural networks (SNN) have already proved their potential in capturing spatial and temporal data. One class of them, the evolving SNN (eSNN), uses a one-pass rank-order learning mechanism and a strategy to evolve a new spiking neuron and new connections to learn new patterns from incoming data. So far these networks have been mainly used for fast image and speech frame-based recognition. Alternative spike-time learning methods, such as Spike-Timing Dependent Plasticity (STDP) and its variant Spike Driven Synaptic Plasticity (SDSP), can also be used to learn spatio-temporal representations, but they usually require many iterations in an unsupervised or semi-supervised mode of learning. This paper introduces a new class of eSNN, dynamic eSNN, that utilise both rank-order learning and dynamic synapses to learn SSTD in a fast, on-line mode. The paper also introduces a new model called deSNN, that utilises rank-order learning and SDSP spike-time learning in unsupervised, supervised, or semi-supervised modes. The SDSP learning is used to evolve dynamically the network changing connection weights that capture spatio-temporal spike data clusters both during training and during recall. The new deSNN model is first illustrated on simple examples and then applied on two case study applications: (1) moving object recognition using address-event representation (AER) with data collected using a silicon retina device; (2) EEG SSTD recognition for brain-computer interfaces. The deSNN models resulted in a superior performance in terms of accuracy and speed when compared with other SNN models that use either rank-order or STDP learning. The reason is that the deSNN makes use of both the information contained in the order of the first input spikes

  17. Temporal patterns of benthic microalgal migration on a semi-protected beach

    NASA Astrophysics Data System (ADS)

    Easley, Jeremiah T.; Hymel, Sabrina N.; Plante, Craig J.

    2005-08-01

    Short-term variability in microphytobenthic biomass and production can be attributed primarily to the migratory rhythms of benthic microalgae (BMA). The majority of BMA vertical migration studies have focused on intertidal mudflats, whereas little is known about the effects of grain size or wave energy on migration patterns. The goals of our study were (1) to describe vertical migration patterns of BMA in beach sediments, (2) to test for seasonal variation in migration patterns, and (3) to identify the dominant taxonomic groups involved in these migrations. Sediment cores were collected approximately monthly from February 2002 until January 2003 from a semi-sheltered, sandy beach. On each date replicate cores were taken at three times, corresponding with changing tidal levels (after aerial exposure at ebb tide, at slack low tide, and after tidal immersion), and were vertically sectioned. Environmental parameters including temperature, salinity, wind speed and direction, and light intensity were also recorded. BMA were dominated by diatoms at all times and at all sediment depths. We found three distinct patterns of temporal shifts in BMA: (1) migration, in which a surface chl a maximum was replaced by a subsurface chl a max after tidal immersion, (2) no shift, wherein vertical profiles from low tide through periods of immersion were unchanged, and (3) removal, in which a loss of surficial chl a occurred after tidal flooding, without a corresponding chl a increase at depth. Logistic regression analysis revealed no relationship between patterns of temporal shifts in BMA and temperature or salinity. The relationship with wind direction was significant, with chl a removal associated with an onshore (i.e., east or northeast) wind. There was no correlation between wind speed and vertical distribution pattern. Wind-induced wave energy, dominated by fetch rather than wind speed, appeared to be a major factor in the resuspension process at our study site. Integrated (top 5

  18. BaySTDetect: detecting unusual temporal patterns in small area data via Bayesian model choice.

    PubMed

    Li, Guangquan; Best, Nicky; Hansell, Anna L; Ahmed, Ismaïl; Richardson, Sylvia

    2012-09-01

    Space-time modeling of small area data is often used in epidemiology for mapping chronic disease rates and by government statistical agencies for producing local estimates of, for example, unemployment or crime rates. Although there is typically a general temporal trend, which affects all areas similarly, abrupt changes may occur in a particular area, e.g. due to emergence of localized predictors/risk factor(s) or impact of a new policy. Detection of areas with "unusual" temporal patterns is therefore important as a screening tool for further investigations. In this paper, we propose BaySTDetect, a novel detection method for short-time series of small area data using Bayesian model choice between two competing space-time models. The first model is a multiplicative decomposition of the area effect and the temporal effect, assuming one common temporal pattern across the whole study region. The second model estimates the time trends independently for each area. For each area, the posterior probability of belonging to the common trend model is calculated, which is then used to classify the local time trend as unusual or not. Crucial to any detection method, we provide a Bayesian estimate of the false discovery rate (FDR). A comprehensive simulation study has demonstrated the consistent good performance of BaySTDetect in detecting various realistic departure patterns in addition to estimating well the FDR. The proposed method is applied retrospectively to mortality data on chronic obstructive pulmonary disease (COPD) in England and Wales between 1990 and 1997 (a) to test a hypothesis that a government policy increased the diagnosis of COPD and (b) to perform surveillance. While results showed no evidence supporting the hypothesis regarding the policy, an identified unusual district (Tower Hamlets in inner London) was later recognized to have higher than national rates of hospital readmission and mortality due to COPD by the National Health Service, which initiated

  19. Temporal patterns of human behaviour: are there signs of deterministic 1/ f scaling?

    NASA Astrophysics Data System (ADS)

    Dünki, Rudolf M.; Keller, Elvira; Meier, Peter F.; Ambühl, Brigitte

    2000-02-01

    Temporal patterns apparently exhibiting scaling properties may originate either from fractal stochastic processes or from causal (i.e., deterministic) dynamics. In general, the distinction between the possible two origins remains a non-trivial task. This holds especially for the interpretation of properties derived from temporal patterns of various types of human behaviour, which were reported repeatedly. We propose here a computational scheme based on a generic intermittency model to test predictability (thus determinism) of a part of a time series with knowledge gathered from another part. The method is applied onto psychodynamic time series related to turns from non-psychosis to psychosis. A nonrandom correlation ( ρ=0.76) between prediction and real outcome is found. Our scheme thus provides a particular kind of fractal risk-assessment for this possibly deterministic process. We briefly discuss possible implications of these findings to evaluate the risk to undergo a state transition, in our case a patients risk to enter a next psychotic state. We further point to some problems concerning data sample pecularities and equivalence between data and model setup.

  20. Hyperpigmentation in North Sea dab Limanda limanda. I. Spatial and temporal patterns and host effects.

    PubMed

    Grütjen, F; Lang, T; Feist, S; Bruno, D; Noguera, P; Wosniok, W

    2013-03-13

    Hyperpigmentation is a term describing a specific pigment anomaly affecting common dab Limanda limanda in the North Sea and, less frequently, in adjacent areas, e.g. the English Channel, Irish and Celtic Seas, western Baltic Sea and Icelandic waters. Other North Sea flatfish species are also affected, but at a markedly lower prevalence. The condition is characterised by the occurrence of varying degrees of green to black patchy pigment spots in the skin of the upper (ocular) body side and pearly-white pigment spots in the skin of the lower (abocular) body side. In the course of fish disease monitoring programmes carried out by Germany and the UK (England and Scotland), a pronounced spatial pattern of hyperpigmentation has been detected in the North Sea. An increase in prevalence has been recorded in almost all North Sea areas studied in the past 2 decades. The prevalence recorded in hot spot areas of the condition increased from 5 to >40% between 1988 and 2009. Analysis of the German data indicates that the prevalence and intensity (degree of discolouration) of hyperpigmentation increase with size and age, indicating a temporal progression of the condition with size and age. Intense hyperpigmentation is associated with increased growth (length) and decreased condition factor. Potential causes of the condition (UV-B radiation nutrition, water temperature increase, demographic changes) and, in particular, of the spatial/temporal patterns recorded as well as the relationship to host-specific factors (sex, age, length, growth, condition factor) are discussed. PMID:23482381

  1. Temporal patterns of human and canine Giardia infection in the United States: 2003-2009.

    PubMed

    Mohamed, Ahmed S; Levine, Michael; Camp, Joseph W; Lund, Elisabeth; Yoder, Jonathan S; Glickman, Larry T; Moore, George E

    2014-02-01

    Giardia protozoa have been suspected to be of zoonotic transmission, including transmission from companion animals such as pet dogs to humans. Patterns of infection have been previously described for dogs and humans, but such investigations have used different time periods and locations for these two species. Our objective was to describe and compare the overall trend and seasonality of Giardia species infection among dogs and humans in the United States from 2003 through 2009 in an ecological study using public health surveillance data and medical records of pet dogs visiting a large nationwide private veterinary hospital. Canine data were obtained from all dogs visiting Banfield hospitals in the United States with fecal test results for Giardia species, from January 2003 through December 2009. Incidence data of human cases from the same time period were obtained from the CDC. Descriptive time plots, a seasonal trend decomposition (STL) procedure, and seasonal autoregressive moving-average (SARIMA) models were used to assess the temporal characteristics of Giardia infection in the two species. Canine incidence showed a gradual decline from 2003 to 2009 with no significant/distinct regular seasonal component. By contrast, human incidence showed a stable annual rate with a significant regular seasonal cycle, peaking in August and September. Different temporal patterns in human and canine Giardia cases observed in this study suggest that the epidemiological disease processes underlying both series might be different, and Giardia transmission between humans and their companion dogs seems uncommon. PMID:24309130

  2. Fish and Phytoplankton Exhibit Contrasting Temporal Species Abundance Patterns in a Dynamic North Temperate Lake

    PubMed Central

    Hansen, Gretchen J. A.; Carey, Cayelan C.

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of “core” (common occurrence and high abundance) and “occasional” (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  3. Fish and phytoplankton exhibit contrasting temporal species abundance patterns in a dynamic north temperate lake.

    PubMed

    Hansen, Gretchen J A; Carey, Cayelan C

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of "core" (common occurrence and high abundance) and "occasional" (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  4. Spatial and temporal patterns of bioindicator mercury in pennsylvania oak forest.

    PubMed

    McClenahen, James R; Hutnik, Russell J; Davis, Donald D

    2013-01-01

    We monitored spatial and temporal patterns of total Hg in forest bioindicators to assess possible local, regional, and global changes in atmospheric Hg deposition. Total Hg concentrations were monitored in leaves and fresh litterfall of northern red oak ( L.), on an epiphytic moss ( Hedw.) on northern red oak stems, and in surface soil organic matter (O and O horizons) in Pennsylvania oak-dominated forests. Variously configured plots were used to monitor Hg deposition near local coal-fired generating stations and an industrial city and along an extended regional transect. Linearly decreasing temporal trends in Hg concentrations occurred in leaves, litterfall, moss, and soil O and O. Mean annual Hg concentrations were often greater near local emissions sources compared with remote areas, especially in the initial monitoring period. Decreasing time trends for different impact areas tended to converge due to greater rates of Hg decrease where initial bioindicator Hg levels were higher. Fresh litter and soil O showed the greatest overall potential as Hg bioindicators. We conclude that Hg deposition has been significantly decreasing over time throughout the study area as a result of locally and regionally declining Hg emissions. Reductions in Hg emissions are likely a co-benefit of the 1990 Clean Air Act regulations and changing industrial activities. Recent leveling of several bioindicator Hg time trends may foretell a shift in Hg depositional patterns. Mercury monitoring studies such as this fulfill a need for documenting local and regional effects of emissions reduction. PMID:23673822

  5. Temporal patterns of genetic and phenotypic variation in the epidemiologically important drone fly, Eristalis tenax.

    PubMed

    Francuski, Lj; Matić, I; Ludoški, J; Milankov, V

    2011-06-01

    Eristalis tenax L. (Diptera: Syrphidae) is commonly known as the drone fly (adult) or rat-tailed maggot (immature). Both adults and immature stages are identified as potential mechanical vectors of mycobacterial pathogens, and early-stage maggots cause accidental myiasis. We compared four samples from Mount Fruška Gora, Serbia, with the aim of obtaining insights into the temporal variations and sexual dimorphism in the species. This integrative approach was based on allozyme loci, morphometric wing parameters (shape and size) and abdominal colour patterns. Consistent sexual dimorphism was observed, indicating that male specimens had lighter abdomens and smaller and narrower wings than females. The distribution of genetic diversity at polymorphic loci indicated genetic divergence among collection dates. Landmark-based geometric morphometrics revealed, contrary to the lack of divergence in wing size, significant wing shape variation throughout the year. In addition, temporal changes in the frequencies of the abdominal patterns observed are likely to relate to the biology of the species and ecological factors in the locality. Hence, the present study expands our knowledge of the genetic diversity and phenotypic plasticity of E. tenax. The quantification of such variability represents a step towards the evaluation of the adaptive potential of this species of medical and epidemiological importance. PMID:21414022

  6. Spatio-Temporal Patterns of Key Exploited Marine Species in the Northwestern Mediterranean Sea

    PubMed Central

    Morfin, Marie; Fromentin, Jean-Marc; Jadaud, Angélique; Bez, Nicolas

    2012-01-01

    This study analyzes the temporal variability/stability of the spatial distributions of key exploited species in the Gulf of Lions (Northwestern Mediterranean Sea). To do so, we analyzed data from the MEDITS bottom-trawl scientific surveys from 1994 to 2010 at 66 fixed stations and selected 12 key exploited species. We proposed a geostatistical approach to handle zero-inflated and non-stationary distributions and to test for the temporal stability of the spatial structures. Empirical Orthogonal Functions and other descriptors were then applied to investigate the temporal persistence and the characteristics of the spatial patterns. The spatial structure of the distribution (i.e. the pattern of spatial autocorrelation) of the 12 key species studied remained highly stable over the time period sampled. The spatial distributions of all species obtained through kriging also appeared to be stable over time, while each species displayed a specific spatial distribution. Furthermore, adults were generally more densely concentrated than juveniles and occupied areas included in the distribution of juveniles. Despite the strong persistence of spatial distributions, we also observed that the area occupied by each species was correlated to its abundance: the more abundant the species, the larger the occupation area. Such a result tends to support MacCall's basin theory, according to which density-dependence responses would drive the expansion of those 12 key species in the Gulf of Lions. Further analyses showed that these species never saturated their habitats, suggesting that they are below their carrying capacity; an assumption in agreement with the overexploitation of several of these species. Finally, the stability of their spatial distributions over time and their potential ability to diffuse outside their main habitats give support to Marine Protected Areas as a potential pertinent management tool. PMID:22655079

  7. Temporal Links in Daily Activity Patterns between Coral Reef Predators and Their Prey

    PubMed Central

    Bosiger, Yoland J.; McCormick, Mark I.

    2014-01-01

    Few studies have documented the activity patterns of both predators and their common prey over 24 h diel cycles. This study documents the temporal periodicity of two common resident predators of juvenile reef fishes, Cephalopholis cyanostigma (rockcod) and Pseudochromis fuscus (dottyback) and compares these to the activity and foraging pattern of a common prey species, juvenile Pomacentrus moluccensis (lemon damselfish). Detailed observations of activity in the field and using 24 h infrared video in the laboratory revealed that the two predators had very different activity patterns. C. cyanostigma was active over the whole 24 h period, with a peak in feeding strikes at dusk and increased activity at both dawn and dusk, while P. fuscus was not active at night and had its highest strike rates at midday. The activity and foraging pattern of P. moluccensis directly opposes that of C. cyanostigma with individuals reducing strike rate and intraspecific aggression at both dawn and dusk, and reducing distance from shelter and boldness at dusk only. Juveniles examined were just outside the size-selection window of P. fuscus. We suggest that the relatively predictable diel behaviour of coral reef predators results from physiological factors such as visual sensory abilities, circadian rhythmicity, variation in hunting profitability, and predation risk at different times of the day. Our study suggests that the diel periodicity of P. moluccensis behaviour may represent a response to increased predation risk at times when both the ability to efficiently capture food and visually detect predators is reduced. PMID:25354096

  8. Circadian variation in stroke onset: identical temporal pattern in ischemic and hemorrhagic events.

    PubMed

    Manfredini, Roberto; Boari, Benedetta; Smolensky, Michael H; Salmi, Raffaella; la Cecilia, Olga; Maria Malagoni, Anna; Haus, Erhard; Manfredini, Fabio

    2005-01-01

    Stroke is the culmination of a heterogeneous group of cerebrovascular diseases that is manifested as ischemia or hemorrhage of one or more blood vessels of the brain. The occurrence of many acute cardiovascular events--such as myocardial infarction, sudden cardiac death, pulmonary embolism, critical limb ischemia, and aortic aneurysm rupture--exhibits prominent 24 h patterning, with a major morning peak and secondary early evening peak. The incidence of stroke exhibits the same 24 h pattern. Although ischemic and hemorrhagic strokes are different entities and are characterized by different pathophysiological mechanisms, they share an identical double-peak 24 h pattern. A constellation of endogenous circadian rhythms and exogenous cyclic factors are involved. The staging of the circadian rhythms in vascular tone, coagulative balance, and blood pressure plus temporal patterns in posture, physical activity, emotional stress, and medication effects play central and/or triggering roles. Features of the circadian rhythm of blood pressure, in terms of their chronic and acute effects on cerebral vessels, and of coagulation are especially important. Clinical medicine has been most concerned with the prevention of stroke in the morning, when population-based studies show it is of greatest risk during the 24 h; however, improved protection of at-risk patients against stroke in the early evening, the second most vulnerable time of cerebrovascular accidents, has received relatively little attention thus far. PMID:16076646

  9. Coexistence of productive and non-productive populations by fluctuation-driven spatio-temporal patterns.

    PubMed

    Behar, Hilla; Brenner, Naama; Louzoun, Yoram

    2014-09-01

    Cooperative interactions, their stability and evolution, provide an interesting context in which to study the interface between cellular and population levels of organization. Here we study a public goods model relevant to microorganism populations actively extracting a growth resource from their environment. Cells can display one of two phenotypes - a productive phenotype that extracts the resources at a cost, and a non-productive phenotype that only consumes the same resource. Both proliferate and are free to move by diffusion; growth rate and diffusion coefficient depend only weakly phenotype. We analyze the continuous differential equation model as well as simulate stochastically the full dynamics. We find that the two sub-populations, which cannot coexist in a well-mixed environment, develop spatio-temporal patterns that enable long-term coexistence in the shared environment. These patterns are purely fluctuation-driven, as the corresponding continuous spatial system does not display Turing instability. The average stability of coexistence patterns derives from a dynamic mechanism in which the producing sub-population equilibrates with the environmental resource and holds it close to an extinction transition of the other sub-population, causing it to constantly hover around this transition. Thus the ecological interactions support a mechanism reminiscent of self-organized criticality; power-law distributions and long-range correlations are found. The results are discussed in the context of general pattern formation and critical behavior in ecology as well as in an experimental context. PMID:25058368

  10. Himalayan glaciers: understanding contrasting patterns of glacier behavior using multi-temporal satellite imagery

    NASA Astrophysics Data System (ADS)

    Racoviteanu, A.

    2014-12-01

    High rates of glacier retreat for the last decades are often reported, and believed to be induced by 20th century climate changes. However, regional glacier fluctuations are complex, and depend on a combination of climate and local topography. Furthermore, in ares such as the Hindu-Kush Himalaya, there are concerns about warming, decreasing monsoon precipitation and their impact on local glacier regimes. Currently, the challenge is in understanding the magnitude of feedbacks between large-scale climate forcing and small-scale glacier behavior. Spatio-temporal patterns of glacier distribution are still llimited in some areas of the high Hindu-Kush Himalaya, but multi-temporal satellite imagery has helped fill spatial and temporal gaps in regional glacier parameters in the last decade. Here I present a synopsis of the behavior of glaciers across the Himalaya, following a west to east gradient. In particular, I focus on spatial patterns of glacier parameters in the eastern Himalaya, which I investigate at multi-spatial scales using remote sensing data from declassified Corona, ASTER, Landsat ETM+, Quickbird and Worldview2 sensors. I also present the use of high-resolution imagery, including texture and thermal analysis for mapping glacier features at small scale, which are particularly useful in understanding surface trends of debris-covered glaciers, which are prevalent in the Himalaya. I compare and contrast spatial patterns of glacier area and élévation changes in the monsoon-influenced eastern Himalaya (the Everest region in the Nepal Himalaya and Sikkim in the Indian Himalaya) with other observations from the dry western Indian Himalaya (Ladakh and Lahul-Spiti), both field measurements and remote sensing-based. In the eastern Himalaya, results point to glacier area change of -0.24 % ± 0.08% per year from the 1960's to the 2006's, with a higher rate of retreat in the last decade (-0.43% /yr). Debris-covered glacier tongues show thinning trends of -30.8 m± 39 m

  11. Gender Differences in Speech Temporal Patterns Detected Using Lagged Co-Occurrence Text-Analysis of Personal Narratives

    ERIC Educational Resources Information Center

    Cohen, Shuki J.

    2009-01-01

    This paper describes a novel methodology for the detection of speech patterns. Lagged co-occurrence analysis (LCA) utilizes the likelihood that a target word will be uttered in a certain position after a trigger word. Using this methodology, it is possible to uncover a statistically significant repetitive temporal patterns of word use, compared to…

  12. Correlation of infrared thermographic patterns and acoustic emission signals with tensile deformation and fracture processes

    NASA Astrophysics Data System (ADS)

    Venkataraman, B.; Raj, Baldev; Mukhopadhyay, C. K.; Jayakumar, T.

    2001-04-01

    During tensile deformation, part of the mechanical work done on the specimen is transformed into heat and acoustic activity. The amount of acoustic activity and the thermal emissions depend on the test conditions and the deformation behavior of the specimen during loading. Authors have used thermography and acoustic emission (AE) simultaneously for monitoring tensile deformation in AISI type 316 SS. Tensile testing was carried out at 298 K at three different strain rates. It has been shown that the simultaneous use of these techniques can provide complementary information for characterizing the tensile deformation and fracture processes.

  13. Temporal patterns and behavioral characteristics of aggregation formation and spawning in the Bermuda chub ( Kyphosus sectatrix)

    NASA Astrophysics Data System (ADS)

    Nemeth, Richard S.; Kadison, Elizabeth

    2013-12-01

    Reef fish spawning aggregations are important life history events that occur at specific times and locations and represent the primary mode of reproduction for many species. This paper provides detailed descriptions of aggregation formation and mass spawning of the Bermuda chub ( Kyphosus sectatrix). Spawning coloration and gamete release of K. sectatrix were observed and filmed at the Grammanik Bank, a deep spawning aggregation site used by many different species located on the southern edge of the Puerto Rican shelf 10 km south of St. Thomas, US Virgin Islands. Underwater visual surveys using technical Nitrox and closed circuit re-breathers were conducted from December 2002 to March 2013 and documented spatial and temporal patterns of movement and aggregation formation along 1.5 km of mesophotic reef. The largest aggregations of K. sectatrix (>200 fish) were observed on the Grammanik Bank January to March from 0 to 11 d after the full moon with peak abundance from 60 to 80 d after the winter solstice across all survey years. Aggregation formation of K. sectatrix coincided with the spawning season of Nassau ( Epinephelus striatus) and yellowfin ( Mycteroperca venenosa) groupers. These spatial and temporal patterns of aggregation formation and spawning suggest that K. sectatrix, an herbivore, may also be a transient aggregating species. On several occasions, chubs were observed both pair spawning and mass spawning. Color patterns and behaviors associated with aggregation and spawning are described and compared to spawning characteristics observed in other species, many of which are similar but others that appear unique to K. sectatrix. This represents the first report of a kyphosid species aggregating to spawn and illuminates a portion of the poorly understood life history of the Bermuda chub.

  14. Seasonal and temporal patterns of NDMA formation potentials in surface waters.

    PubMed

    Uzun, Habibullah; Kim, Daekyun; Karanfil, Tanju

    2015-02-01

    The seasonal and temporal patterns of N-nitrosodimethylamine (NDMA) formation potentials (FPs) were examined with water samples collected monthly for 21 month period in 12 surface waters. This long term study allowed monitoring the patterns of NDMA FPs under dynamic weather conditions (e.g., rainy and dry periods) covering several seasons. Anthropogenically impacted waters which were determined by high sucralose levels (>100 ng/L) had higher NDMA FPs than limited impacted sources (<100 ng/L). In most sources, NDMA FP showed more variability in spring months, while seasonal mean values remained relatively consistent. The study also showed that watershed characteristics played an important role in the seasonal and temporal patterns. In the two dam-controlled river systems (SW A and G), the NDMA FP levels at the downstream sampling locations were controlled by the NDMA levels in the dams independent of either the increases in discharge rates due to water releases from the dams prior to or during the heavy rain events or intermittent high NDMA FP levels observed at the upstream of dams. The large reservoirs and impoundments on rivers examined in this study appeared serving as an equalization basin for NDMA precursors. On the other hand, in a river without an upstream reservoir (SW E), the NDMA levels were influenced by the ratio of an upstream wastewater treatment plant (WWTP) effluent discharge to the river discharge rate. The impact of WWTP effluent decreased during the high river flow periods due to rain events. Linear regression with independent variables DOC, DON, and sucralose yielded poor correlations with NDMA FP (R(2) < 0.27). Multiple linear regression analysis using DOC and log [sucralose] yielded a better correlation with NDMA FP (R(2) = 0.53). PMID:25481075

  15. [Spatial and temporal patterns of stream fish assemblages in the Qiupu Headwaters National Wetland Park].

    PubMed

    Wang, Wen-Jian; Chu, Ling; Si, Chun; Zhu, Ren; Chen, Wen-Hao; Chen, Fang-Ming; Yan, Yun-Zhi

    2013-08-01

    Identifying and clarifying how stream fish assemblage patterns vary spatially and temporally are basic measures for the conservation and management of fish species. Based on data collected from 24 wadeable reaches within the Qiupu Headwaters National Wetland Park between May and October 2012, we examined the spatial and temporal patterns of the assemblage structures and diversities, collecting a total of 29 fish species belonging to four orders and ten families. The results of our survey showed influences of local habitat and tributary spatial position variables on fish assemblages. Fish diversity showed significant variations across stream-orders and seasons, which were higher in the second-order streams than in first-order streams and higher in October than in May. Habitat factors such as substrate coarseness and heterogeneity, water temperature and water depth, as well as tributary position factor-link, showed significant effects on fish diversity. Fish assemblages fitted the nested pattern that upstream assemblages presented as a nested subset of downstream assemblages. Fish assemblage structures did not vary significantly across seasons but did across stream-orders; fish assemblages between first- and second-order streams showed significant differences despite some overlap. These spatial differences mainly resulted from spatial variations of the relative abundance of Cobitis rarus, Ctenogobius sp., Zacco platypus, Phoxinus oxycephalus, Rhodeus ocellatus and Vanmanenia stenosoma, among which P. oxycephalus had higher abundance in first-order than in second-order streams but the other five species were more abundant in second-order streams. Fish assemblage structures were significantly related to substrate heterogeneity, water depth, stream order, link and C-link. PMID:23913894

  16. The use of census migration data to approximate human movement patterns across temporal scales.

    PubMed

    Wesolowski, Amy; Buckee, Caroline O; Pindolia, Deepa K; Eagle, Nathan; Smith, David L; Garcia, Andres J; Tatem, Andrew J

    2013-01-01

    Human movement plays a key role in economies and development, the delivery of services, and the spread of infectious diseases. However, it remains poorly quantified partly because reliable data are often lacking, particularly for low-income countries. The most widely available are migration data from human population censuses, which provide valuable information on relatively long timescale relocations across countries, but do not capture the shorter-scale patterns, trips less than a year, that make up the bulk of human movement. Census-derived migration data may provide valuable proxies for shorter-term movements however, as substantial migration between regions can be indicative of well connected places exhibiting high levels of movement at finer time scales, but this has never been examined in detail. Here, an extensive mobile phone usage data set for Kenya was processed to extract movements between counties in 2009 on weekly, monthly, and annual time scales and compared to data on change in residence from the national census conducted during the same time period. We find that the relative ordering across Kenyan counties for incoming, outgoing and between-county movements shows strong correlations. Moreover, the distributions of trip durations from both sources of data are similar, and a spatial interaction model fit to the data reveals the relationships of different parameters over a range of movement time scales. Significant relationships between census migration data and fine temporal scale movement patterns exist, and results suggest that census data can be used to approximate certain features of movement patterns across multiple temporal scales, extending the utility of census-derived migration data. PMID:23326367

  17. Spatio-temporal patterns of soil erosion and suspended sediment dynamics in the Mekong River Basin.

    PubMed

    Suif, Zuliziana; Fleifle, Amr; Yoshimura, Chihiro; Saavedra, Oliver

    2016-10-15

    Understanding of the distribution patterns of sediment erosion, concentration and transport in river basins is critically important as sediment plays a major role in river basin hydrophysical and ecological processes. In this study, we proposed an integrated framework for the assessment of sediment dynamics, including soil erosion (SE), suspended sediment load (SSL) and suspended sediment concentration (SSC), and applied this framework to the Mekong River Basin. The Revised Universal Soil Loss Equation (RUSLE) model was adopted with a geographic information system to assess SE and was coupled with a sediment accumulation and a routing scheme to simulate SSL. This framework also analyzed Landsat imagery captured between 1987 and 2000 together with ground observations to interpolate spatio-temporal patterns of SSC. The simulated SSL results from 1987 to 2000 showed the relative root mean square error of 41% and coefficient of determination (R(2)) of 0.89. The polynomial relationship of the near infrared exoatmospheric reflectance and the band 4 wavelength (760-900nm) to the observed SSC at 9 sites demonstrated the good agreement (overall relative RMSE=5.2%, R(2)=0.87). The result found that the severe SE occurs in the upper (China and Lao PDR) and lower (western part of Vietnam) regions. The SSC in the rainy season (June-November) showed increasing and decreasing trends longitudinally in the upper (China and Lao PDR) and lower regions (Cambodia), respectively, while the longitudinal profile of SSL showed a fluctuating trend along the river in the early rainy season. Overall, the results described the unique spatio-temporal patterns of SE, SSL and SSC in the Mekong River Basin. Thus, the proposed integrated framework is useful for elucidating complex process of sediment generation and transport in the land and river systems of large river basins. PMID:27338846

  18. Detecting spatio-temporal controls on depth distributions of root water uptake using soil moisture patterns

    NASA Astrophysics Data System (ADS)

    Blume, Theresa; Heidbüchel, Ingo; Simard, Sonia; Güntner, Andreas; Weiler, Markus

    2016-04-01

    Landscape scale soil moisture patterns show a pronounced shift when plants become active during the growing season. Soil moisture patterns are then not only controlled by soils, topography and related abiotic site characteristics as well as site characteristic throughfall patterns but also by root water uptake. In this study root water uptake from different soil depths is estimated based on diurnal fluctuations in soil moisture content and was investigated with a setup of 15 field sites in a forest in northeastern Germany. These sites cover different topographic positions and forest stands. Vegetation types include pine forest (young and old) and different deciduous forest stands. Available data at all sites includes information at high temporal resolution from 5 soil moisture and soil temperature profiles, matric potential, piezometers and sapflow sensors as well as standard climate data. The resulting comprehensive data set of depth distributed root water uptake shows differences in overall amounts as well as in uptake depth distributions between different forest stands, but also related to slope position and thus depth to groundwater. Temporal dynamics of signal strength within the profile suggest a locally shifting spatial distribution of root water uptake depending on water availability. The relative contributions of the different depths to overall root water uptake shift as the summer progresses. However, the relationship of these depth resolved uptake rates to overall soil water availability varies considerably between tree species. This unique data set of depth specific contributions to root water uptake down to a depth of 2 m allows a much more detailed analysis of tree response to water availability than the more common transpiration estimates generated by sapflow or eddy flux measurements.

  19. Self-Organization of Spatio-Temporal Hierarchy via Learning of Dynamic Visual Image Patterns on Action Sequences.

    PubMed

    Jung, Minju; Hwang, Jungsik; Tani, Jun

    2015-01-01

    It is well known that the visual cortex efficiently processes high-dimensional spatial information by using a hierarchical structure. Recently, computational models that were inspired by the spatial hierarchy of the visual cortex have shown remarkable performance in image recognition. Up to now, however, most biological and computational modeling studies have mainly focused on the spatial domain and do not discuss temporal domain processing of the visual cortex. Several studies on the visual cortex and other brain areas associated with motor control support that the brain also uses its hierarchical structure as a processing mechanism for temporal information. Based on the success of previous computational models using spatial hierarchy and temporal hierarchy observed in the brain, the current report introduces a novel neural network model for the recognition of dynamic visual image patterns based solely on the learning of exemplars. This model is characterized by the application of both spatial and temporal constraints on local neural activities, resulting in the self-organization of a spatio-temporal hierarchy necessary for the recognition of complex dynamic visual image patterns. The evaluation with the Weizmann dataset in recognition of a set of prototypical human movement patterns showed that the proposed model is significantly robust in recognizing dynamically occluded visual patterns compared to other baseline models. Furthermore, an evaluation test for the recognition of concatenated sequences of those prototypical movement patterns indicated that the model is endowed with a remarkable capability for the contextual recognition of long-range dynamic visual image patterns. PMID:26147887

  20. Self-Organization of Spatio-Temporal Hierarchy via Learning of Dynamic Visual Image Patterns on Action Sequences

    PubMed Central

    Jung, Minju; Hwang, Jungsik; Tani, Jun

    2015-01-01

    It is well known that the visual cortex efficiently processes high-dimensional spatial information by using a hierarchical structure. Recently, computational models that were inspired by the spatial hierarchy of the visual cortex have shown remarkable performance in image recognition. Up to now, however, most biological and computational modeling studies have mainly focused on the spatial domain and do not discuss temporal domain processing of the visual cortex. Several studies on the visual cortex and other brain areas associated with motor control support that the brain also uses its hierarchical structure as a processing mechanism for temporal information. Based on the success of previous computational models using spatial hierarchy and temporal hierarchy observed in the brain, the current report introduces a novel neural network model for the recognition of dynamic visual image patterns based solely on the learning of exemplars. This model is characterized by the application of both spatial and temporal constraints on local neural activities, resulting in the self-organization of a spatio-temporal hierarchy necessary for the recognition of complex dynamic visual image patterns. The evaluation with the Weizmann dataset in recognition of a set of prototypical human movement patterns showed that the proposed model is significantly robust in recognizing dynamically occluded visual patterns compared to other baseline models. Furthermore, an evaluation test for the recognition of concatenated sequences of those prototypical movement patterns indicated that the model is endowed with a remarkable capability for the contextual recognition of long-range dynamic visual image patterns. PMID:26147887

  1. Linking water surface roughness to velocity patterns using terrestrial laser scanning and acoustic doppler velocimetry

    NASA Astrophysics Data System (ADS)

    Heritage, George; Milan, David; Entwistle, Neil

    2010-05-01

    There are well established links between water surface characteristics and hydraulics. Biotope identification is currently an important part of the River Habitat Survey in England and Wales. Their differentiation is based upon recognition of a family of flow features exhibited on the water surface. Variability in this water surface ‘roughness' is dependent upon the interaction of flow with boundary roughness and flow depth. Past research that has attempted to differentiate biotopes based upon differences in Froude number (Fr) and Reynolds number (Re), however this linkage has only been limited to local analysis between flow velocity, depth and roughness. Milan et al. (2010) have recently demonstrated that terrestrial laser scanning (TLS) can be applied to produce fully quantitative maps of hydraulic habitat, based upon defined water surface roughness delimeters. However the nature of the linkages between water surface roughness, flow velocity and depth are still poorly understood, particularly at the reach-scale. This study attempts to provide a full spatial picture of the links between water surface roughness, flow depth and velocity. A Sontek Acoustic Doppler Velocity Profiler (ADVP) was used to provide detailed information on vertical velocity and water depth for a 300 m reach of the gravel-bed River Wharfe, Yorkshire, UK. Simultaneous to the ADVP measurements, a Riegl LMS-Z210 TLS was used to take a series of first return scans of the water surface. Categorisation of the point cloud elevation data for the water surface was achieved through the allocation of moving window standard deviation values to a regular grid, thus defining water surface roughness. The ADVP data demonstrate gross reach-scale variation in velocity and depth linked to bedforms, and more localised spatial and temporal variation within biotope units. The ADVP data was used to produce reach-scale maps of Fr and Re. The extent to which water surface roughness defined biotopes mapped onto these

  2. Buoyancy characteristics of the bloater (Coregonus hoyi) in relation to patterns of vertical migration and acoustic backscattering

    USGS Publications Warehouse

    Fleischer, Guy W.; TeWinkel, Leslie M.

    1998-01-01

    Acoustic studies in Lake Michigan found that bloaters (Coregonus hoyi) were less reflective per size than the other major pelagic species. This difference in in situ acoustic backscattering could indicate that the deep-water bloaters have compressed swimbladders for much of their vertical range with related implications on buoyancy. To test this hypothesis, the buoyancy characteristics of bloaters were determined with fish placed in a cage that was lowered to bottom and monitored with an underwater camera. We found bloaters were positively buoyant near surface, neutrally buoyant at intermediate strata, and negatively buoyant near bottom. This pattern was consistent for the range of depths bloaters occur. The depth of neutral buoyancy (near the 50-n strata) corresponds with the maximum extent of vertical migration for bloaters observed in acoustic surveys. Fish below this depth would be negatively buoyant which supports our contention that bloaters deeper in the water column have compressed swimbladders. Understanding the buoyancy characteristics of pelagic fishes will help to predict the effects of vertical migration on target strength measurement and confirms the use of acoustics as a tool to identify and quantify the ecological phenomenon of vertical migration.

  3. Ultrasonic acoustic health monitoring of ball bearings using neural network pattern classification of power spectral density

    NASA Astrophysics Data System (ADS)

    Kirchner, William; Southward, Steve; Ahmadian, Mehdi

    2010-03-01

    This paper presents a generic passive non-contact based approach using ultrasonic acoustic emissions (UAE) to facilitate the neural network classification of bearing health, and more specifically the bearing operating condition. The acoustic emission signals used in this study are in the ultrasonic range (20-120 kHz). A direct benefit of microphones capable of measurements in this frequency range is their inherent directionality. Using selected bands from the UAE power spectrum signature, it is possible to pose the health monitoring problem as a multi-class classification problem, and make use of a single neural network to classify the ultrasonic acoustic emission signatures. Artificial training data, based on statistical properties of a significantly smaller experimental data set is used to train the neural network. This specific approach is generic enough to suggest that it is applicable to a variety of systems and components where periodic acoustic emissions exist.

  4. Relationship between Musical Characteristics and Temporal Breathing Pattern in Piano Performance.

    PubMed

    Sakaguchi, Yutaka; Aiba, Eriko

    2016-01-01

    Although there is growing evidence that breathing is modulated by various motor and cognitive activities, the nature of breathing in musical performance has been little explored. The present study examined the temporal breath pattern in piano performance, aiming to elucidate how breath timing is related to musical organization/events and performance. In the experiments, the respiration of 15 professional and amateur pianists, playing 10 music excerpts in total (from four-octave C major scale, Hanon's exercise, J. S. Bach's Invention, Mozart's Sonatas, and Debussy's Clair de lune), was monitored by capnography. The relationship between breathing and musical characteristics was analyzed. Five major results were obtained. (1) Mean breath interval was shortened for excerpts in faster tempi. (2) Fluctuation of breath intervals was reduced for the pieces for finger exercise and those in faster tempi. Pianists showing large within-trial fluctuation also exhibited large inter-excerpt difference. (3) Inter-trial consistency of the breath patterns depended on the excerpts. Consistency was generally reduced for the excerpts that could be performed mechanically (i.e., pieces for finger exercise), but interestingly, one third of the participant showed consistent patterns for the simple scale, correlated with the ascending/descending sequences. (4) Pianists tended to exhale just after the music onsets, inhale at the rests, and inhibit inhale during the slur parts. There was correlation between breathing pattern and two-voice polyphonic structure for several participants. (5) Respiratory patterns were notably different among the pianists. Every pianist showed his or her own characteristic features commonly for various musical works. These findings suggest that breathing in piano performance depends not only on musical parameters and organization written in the score but also some pianist-dependent factors which might be ingrained to individual pianists. PMID:27516736

  5. Relationship between Musical Characteristics and Temporal Breathing Pattern in Piano Performance

    PubMed Central

    Sakaguchi, Yutaka; Aiba, Eriko

    2016-01-01

    Although there is growing evidence that breathing is modulated by various motor and cognitive activities, the nature of breathing in musical performance has been little explored. The present study examined the temporal breath pattern in piano performance, aiming to elucidate how breath timing is related to musical organization/events and performance. In the experiments, the respiration of 15 professional and amateur pianists, playing 10 music excerpts in total (from four-octave C major scale, Hanon's exercise, J. S. Bach's Invention, Mozart's Sonatas, and Debussy's Clair de lune), was monitored by capnography. The relationship between breathing and musical characteristics was analyzed. Five major results were obtained. (1) Mean breath interval was shortened for excerpts in faster tempi. (2) Fluctuation of breath intervals was reduced for the pieces for finger exercise and those in faster tempi. Pianists showing large within-trial fluctuation also exhibited large inter-excerpt difference. (3) Inter-trial consistency of the breath patterns depended on the excerpts. Consistency was generally reduced for the excerpts that could be performed mechanically (i.e., pieces for finger exercise), but interestingly, one third of the participant showed consistent patterns for the simple scale, correlated with the ascending/descending sequences. (4) Pianists tended to exhale just after the music onsets, inhale at the rests, and inhibit inhale during the slur parts. There was correlation between breathing pattern and two-voice polyphonic structure for several participants. (5) Respiratory patterns were notably different among the pianists. Every pianist showed his or her own characteristic features commonly for various musical works. These findings suggest that breathing in piano performance depends not only on musical parameters and organization written in the score but also some pianist-dependent factors which might be ingrained to individual pianists. PMID:27516736

  6. Optimization of the temporal pattern of radiation: An IMRT based study

    SciTech Connect

    Altman, Michael B.; Chmura, Steven J.; Deasy, Joseph O.; Roeske, John C. . E-mail: roeske@rover.uchicago.edu

    2006-11-01

    Purpose: To investigate how the temporal pattern of dose applied during a single-intensity modulated radiation therapy (IMRT) fraction can be arranged to maximize or minimize cell kill. Methods and Materials: Using the linear-quadratic repair-time model and a simplified IMRT delivery pattern model, the surviving fraction of cells for a single fraction was calculated for all permutations of the dose delivery pattern for an array of clinically based IMRT cases. Maximization of cell kill was achieved by concentrating the highest doses in the middle of a fraction, while minimization was achieved by spreading the highest doses between the beginning and end. The percent difference between maximum and minimum cell kill (%Diff{sub min/max}) and the difference between maximum and minimum total doses normalized to 2 Gy/fx ({delta}NTD{sub 2Gy}) was calculated for varying fraction durations (T), {alpha}/{beta} ratios, and doses/fx. Results: %Diff{sub min/max} and {delta}NTD{sub 2Gy} both increased with increasing T and with decreasing {alpha}/{beta}. The largest increases occurred with dose/fx. With {alpha}/{beta} = 3 Gy and 30 min/fx, %Diff{sub min/max} ranged from 2.7-5.3% for 2 Gy/fx to 48.6-74.1% for 10 Gy/fx, whereas {delta}NTD{sub 2Gy} ranged from 1.2 Gy-2.4 Gy for 30 fractions of 2 Gy/fx to 2.3-4.8 Gy for 2 fractions of 10.84 Gy/fx. Using {alpha}/{beta} = 1.5 Gy, an analysis of prostate hypofractionation schemes yielded differences in clinical outcome based on the pattern of applied dose ranging from 3.2%-6.1% of the treated population. Conclusions: Rearrangement of the temporal pattern of dose for a single IMRT fraction could be used to optimize cell kill and to directly, though modestly, affect treatment outcome.

  7. A descriptive analysis of temporal and spatial patterns of variability in Puget Sound oceanographic properties

    NASA Astrophysics Data System (ADS)

    Moore, Stephanie K.; Mantua, Nathan J.; Newton, Jan A.; Kawase, Mitsuhiro; Warner, Mark J.; Kellogg, Jonathan P.

    2008-12-01

    Temporal and spatial patterns of variability in Puget Sound's oceanographic properties are determined using continuous vertical profile data from two long-term monitoring programs; monthly observations at 16 stations from 1993 to 2002, and biannual observations at 40 stations from 1998 to 2003. Climatological monthly means of temperature, salinity, and density reveal strong seasonal patterns. Water temperatures are generally warmest (coolest) in September (February), with stations in shallow finger inlets away from mixing zones displaying the largest temperature ranges. Salinities and densities are strongly influenced by freshwater inflows from major rivers during winter and spring from precipitation and snowmelt, respectively, and variations are greatest in the surface waters and at stations closest to river mouths. Vertical density gradients are primarily determined by salinity variations in the surface layer, with stations closest to river mouths most frequently displaying the largest buoyancy frequencies at depths of approximately 4-6 m. Strong tidal stirring and reflux over sills at the entrance to Puget Sound generally removes vertical stratification. Mean summer and winter values of oceanographic properties reveal patterns of spatial connectivity in Puget Sound's three main basins; Whidbey Basin, Hood Canal, and Main Basin. Surface waters that are warmed in the summer are vertically mixed over the sill at Admiralty Inlet and advected at depth into Whidbey Basin and Hood Canal. Cooler and fresher surface waters cap these warmer waters during winter, producing temperature inversions.

  8. Rationalizing spatial exploration patterns of wild animals and humans through a temporal discounting framework.

    PubMed

    Namboodiri, Vijay Mohan K; Levy, Joshua M; Mihalas, Stefan; Sims, David W; Hussain Shuler, Marshall G

    2016-08-01

    Understanding the exploration patterns of foragers in the wild provides fundamental insight into animal behavior. Recent experimental evidence has demonstrated that path lengths (distances between consecutive turns) taken by foragers are well fitted by a power law distribution. Numerous theoretical contributions have posited that "Lévy random walks"-which can produce power law path length distributions-are optimal for memoryless agents searching a sparse reward landscape. It is unclear, however, whether such a strategy is efficient for cognitively complex agents, from wild animals to humans. Here, we developed a model to explain the emergence of apparent power law path length distributions in animals that can learn about their environments. In our model, the agent's goal during search is to build an internal model of the distribution of rewards in space that takes into account the cost of time to reach distant locations (i.e., temporally discounting rewards). For an agent with such a goal, we find that an optimal model of exploration in fact produces hyperbolic path lengths, which are well approximated by power laws. We then provide support for our model by showing that humans in a laboratory spatial exploration task search space systematically and modify their search patterns under a cost of time. In addition, we find that path length distributions in a large dataset obtained from free-ranging marine vertebrates are well described by our hyperbolic model. Thus, we provide a general theoretical framework for understanding spatial exploration patterns of cognitively complex foragers. PMID:27385831

  9. User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm.

    PubMed

    Bourobou, Serge Thomas Mickala; Yoo, Younghwan

    2015-01-01

    This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things) based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen's temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home. PMID:26007738

  10. User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm

    PubMed Central

    Bourobou, Serge Thomas Mickala; Yoo, Younghwan

    2015-01-01

    This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things) based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen’s temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home. PMID:26007738

  11. [Temporal pattern of walking on various training facilities under the conditions of the earth's and simulated lunar gravity].

    PubMed

    Panfilov, V E; Gurfinkel', V S

    2009-01-01

    Eight test-subjects participated in 120 treadmill tests (drive power of 10 and 85 kW) aimed to compare the walking patterns at 1 and reduced gravity. The temporal pattern of steps was noted to change significantly on the low-power treadmill. On the strength of convergence of calculated and experimental data the suggestion has been made that the leg transfer movement follows the pattern of spontaneous oscillations. PMID:20120918

  12. Rapid Generation of Multiplexed Cell Cocultures Using Acoustic Droplet Ejection Followed by Aqueous Two-Phase Exclusion Patterning

    PubMed Central

    Fang, Yu; Frampton, John P.; Raghavan, Shreya; Sabahi-Kaviani, Rahman; Luker, Gary

    2012-01-01

    The development of tools for patterning cocultures of cells is a fundamental interest among cell biologists and tissue engineers. Although a variety of systems exist for micropatterning cells, the methods used to generate cell micropatterns are often cumbersome and difficult to adapt for tissue engineering purposes. This study combines acoustic droplet ejection and aqueous two-phase system exclusion patterning to introduce a method for patterning cocultures of cells in multiplexed arrays. This new method uses focused acoustic radiation pressure to eject discrete droplets of uniform size from the surface of a dextran solution containing cells. The size of droplets is controlled by adjusting ultrasound parameters, such as pulse, duration, and amplitude. The ejected dextran droplets are captured on a cell culture substrate that is manipulated by a computer-controlled 3D positioning system according to predesigned patterns. Polyethylene glycol solution containing an additional cell type is then added to the culture dish to produce a two-phase system capable of depositing different types of cells around the initial pattern of cells. We demonstrate that our method can produce patterns of islands or lines with two or more cell types. Further, we demonstrate that patterns can be multiplexed for studies involving combinations of multiple cell types. This method offers a tool to transfer cell-containing samples in a contact-free, nozzle-less manner, avoiding sample cross-contamination. It can be used to pattern cell cocultures without complicated fabrication of culture substrates. These capabilities were used to examine the response of cancer cells to the presence of a ligand (CXCL12) secreted from surrounding cocultured cells. PMID:22356298

  13. Monitoring, analyzing and simulating of spatial-temporal changes of landscape pattern over mining area

    NASA Astrophysics Data System (ADS)

    Liu, Pei; Han, Ruimei; Wang, Shuangting

    2014-11-01

    According to the merits of remotely sensed data in depicting regional land cover and Land changes, multi- objective information processing is employed to remote sensing images to analyze and simulate land cover in mining areas. In this paper, multi-temporal remotely sensed data were selected to monitor the pattern, distri- bution and trend of LUCC and predict its impacts on ecological environment and human settlement in mining area. The monitor, analysis and simulation of LUCC in this coal mining areas are divided into five steps. The are information integration of optical and SAR data, LULC types extraction with SVM classifier, LULC trends simulation with CA Markov model, landscape temporal changes monitoring and analysis with confusion matrixes and landscape indices. The results demonstrate that the improved data fusion algorithm could make full use of information extracted from optical and SAR data; SVM classifier has an efficient and stable ability to obtain land cover maps, which could provide a good basis for both land cover change analysis and trend simulation; CA Markov model is able to predict LULC trends with good performance, and it is an effective way to integrate remotely sensed data with spatial-temporal model for analysis of land use / cover change and corresponding environmental impacts in mining area. Confusion matrixes are combined with landscape indices to evaluation and analysis show that, there was a sustained downward trend in agricultural land and bare land, but a continues growth trend tendency in water body, forest and other lands, and building area showing a wave like change, first increased and then decreased; mining landscape has undergone a from small to large and large to small process of fragmentation, agricultural land is the strongest influenced landscape type in this area, and human activities are the primary cause, so the problem should be pay more attentions by government and other organizations.

  14. Wildlife in the Matrix: Spatio-Temporal Patterns of Herbivore Occurrence in Karnataka, India

    NASA Astrophysics Data System (ADS)

    Karanth, Krithi K.

    2016-01-01

    Wildlife reserves are becoming increasingly isolated from the surrounding human-dominated landscapes particularly in Asia. It is imperative to understand how species are distributed spatially and temporally in and outside reserves, and what factors influence their occurrence. This study surveyed 7500 km2 landscape surrounding five reserves in the Western Ghats to examine patterns of occurrence of five herbivores: elephant, gaur, sambar, chital, and pig. Species distributions are modeled spatio-temporally using an occupancy approach. Trained field teams conducted 3860 interview-based occupancy surveys in a 10-km buffer surrounding these five reserves in 2012. I found gaur and wild pig to be the least and most wide-ranging species, respectively. Elephant and chital exhibit seasonal differences in spatial distribution unlike the other three species. As predicted, distance to reserve, the reserve itself, and forest cover were associated with higher occupancy of all species, and higher densities of people negatively influenced occurrence of all species. Park management, species protection, and conflict mitigation efforts in this landscape need to incorporate temporal and spatial understanding of species distributions. All species are known crop raiders and conflict prone locations with resources (such as water and forage) have to be monitored and managed carefully. Wildlife reserves and adjacent areas are critical for long-term persistence and habitat use for all five herbivores and must be monitored to ensure wildlife can move freely. Such a large-scale approach to map and monitor species distributions can be adapted to other landscapes to identify and monitor critical habitats shared by people and wildlife.

  15. Wildlife in the Matrix: Spatio-Temporal Patterns of Herbivore Occurrence in Karnataka, India.

    PubMed

    Karanth, Krithi K

    2016-01-01

    Wildlife reserves are becoming increasingly isolated from the surrounding human-dominated landscapes particularly in Asia. It is imperative to understand how species are distributed spatially and temporally in and outside reserves, and what factors influence their occurrence. This study surveyed 7500 km(2) landscape surrounding five reserves in the Western Ghats to examine patterns of occurrence of five herbivores: elephant, gaur, sambar, chital, and pig. Species distributions are modeled spatio-temporally using an occupancy approach. Trained field teams conducted 3860 interview-based occupancy surveys in a 10-km buffer surrounding these five reserves in 2012. I found gaur and wild pig to be the least and most wide-ranging species, respectively. Elephant and chital exhibit seasonal differences in spatial distribution unlike the other three species. As predicted, distance to reserve, the reserve itself, and forest cover were associated with higher occupancy of all species, and higher densities of people negatively influenced occurrence of all species. Park management, species protection, and conflict mitigation efforts in this landscape need to incorporate temporal and spatial understanding of species distributions. All species are known crop raiders and conflict prone locations with resources (such as water and forage) have to be monitored and managed carefully. Wildlife reserves and adjacent areas are critical for long-term persistence and habitat use for all five herbivores and must be monitored to ensure wildlife can move freely. Such a large-scale approach to map and monitor species distributions can be adapted to other landscapes to identify and monitor critical habitats shared by people and wildlife. PMID:26319143

  16. Migratory patterns of exotic brown trout Salmo trutta in south-western Hokkaido, Japan, on the basis of otolith Sr:Ca ratios and acoustic telemetry.

    PubMed

    Honda, K; Arai, T; Kobayashi, S; Tsuda, Y; Miyashita, K

    2012-02-01

    Acoustic telemetry and microchemical analysis of otolith strontium-calcium ratios were used to evaluate how exotic brown trout Salmo trutta have responded to Japanese riverine environments of south-western Hokkaido by observing their migratory patterns. The existence of anadromous S. trutta was also verified. Most S. trutta caught in rivers for otolith analysis were freshwater residents (95·6%), whereas those caught in the sea were mainly smolts (91·3%), which had just migrated from rivers during spring. Anadromous S. trutta (n = 6) were captured in rivers and in the sea, confirming the existence of mature pre- and post-spawning fish. According to telemetry results, both mature and immature S. trutta used the river in winter, and their estimated sea-run timings showed individual differences. Through the combination of these two methods, migratory patterns on various spatio-temporal scales were observed. This first documentation of the presence of both male and female anadromous S. trutta in the same region within Japan indicated the risk of further colonization of exotic S. trutta via oceanic migration. PMID:22268438

  17. Spatial and temporal patterns in sulfate aerosol acidity and neutralization within a metropolitan area

    SciTech Connect

    Waldman, J.M.; Lloy, P.J. ); Thurston, G.D.; Lippmann, M. )

    1988-01-01

    Measurements of atmospheric acidity are relatively new and not routine. The influences and variability due to local phenomena have not been investigated heretofore. As part of a U.S. EPA-sponsored air pollution-health effects study in metropolitan Toronto (population 2.3 million), aerosol acidity was monitored at three sites. This study is discussed in the book. The primary objective was to document human exposures to acidic aerosol during the study period. Because of its chemical reactivity, it was not known whether substantial variations in acidic aerosol concentrations would be found within the subregion (area 60 km{sup 2}). A network of three acidic aerosol monitoring sites was used. Hence, this study design offered the first opportunity to compare spatial and temporal patterns of acidic aerosol levels within a large, receptor region.

  18. Temporal patterns of emergency calls of a metropolitan city in China

    NASA Astrophysics Data System (ADS)

    Wang, Wenjun; Yuan, Ning; Pan, Lin; Jiao, Pengfei; Dai, Weidi; Xue, Guixiang; Liu, Dong

    2015-10-01

    Quantitative understanding of human communication behavior, one of the fundamental human activities, is of great value in many practical problems, ranging from urban planning to emergency management. Most of the recent studies have focused on human communication under normal situations. Here, we study the temporal patterns of emergency calls, which is a special kind of human communication activity under emergency circumstances, by analyzing a dataset of emergency call records that collected from a metropolitan city in China during a five year period. We find that most individuals rarely make emergency calls. The distribution of inter-call durations decays as double power law along with an exponential tail. We also discover that, comparing with the normal communication activities, the activity of calling the emergency number shows more significant characteristics of burstiness and memory. We further demonstrate that the behavior of calling the emergency number when people encounter extreme events could be explained by an event-driven memory process.

  19. Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation

    NASA Astrophysics Data System (ADS)

    Busemeyer, Lucas; Ruckelshausen, Arno; Möller, Kim; Melchinger, Albrecht E.; Alheit, Katharina V.; Maurer, Hans Peter; Hahn, Volker; Weissmann, Elmar A.; Reif, Jochen C.; Würschum, Tobias

    2013-08-01

    To extend agricultural productivity by knowledge-based breeding and tailor varieties adapted to specific environmental conditions, it is imperative to improve our ability to assess the dynamic changes of the phenome of crops under field conditions. To this end, we have developed a precision phenotyping platform that combines various sensors for a non-invasive, high-throughput and high-dimensional phenotyping of small grain cereals. This platform yielded high prediction accuracies and heritabilities for biomass of triticale. Genetic variation for biomass accumulation was dissected with 647 doubled haploid lines derived from four families. Employing a genome-wide association mapping approach, two major quantitative trait loci (QTL) for biomass were identified and the genetic architecture of biomass accumulation was found to be characterized by dynamic temporal patterns. Our findings highlight the potential of precision phenotyping to assess the dynamic genetics of complex traits, especially those not amenable to traditional phenotyping.

  20. Differentiation of bacterial colonies and temporal growth patterns using hyperspectral imaging

    NASA Astrophysics Data System (ADS)

    Mehrübeoglu, Mehrube; Buck, Gregory W.; Livingston, Daniel W.

    2014-09-01

    Detection and identification of bacteria are important for health and safety. Hyperspectral imaging offers the potential to capture unique spectral patterns and spatial information from bacteria which can then be used to detect and differentiate bacterial species. Here, hyperspectral imaging has been used to characterize different bacterial colonies and investigate their growth over time. Six bacterial species (Pseudomonas fluorescens, Escherichia coli, Serratia marcescens, Salmonella enterica, Staphylococcus aureus, Enterobacter aerogenes) were grown on tryptic soy agar plates. Hyperspectral data were acquired immediately after, 24 hours after, and 96 hours after incubation. Spectral signatures from bacterial colonies demonstrated repeatable measurements for five out of six species. Spatial variations as well as changes in spectral signatures were observed across temporal measurements within and among species at multiple wavelengths due to strengthening or weakening reflectance signals from growing bacterial colonies based on their pigmentation. Between-class differences and within-class similarities were the most prominent in hyperspectral data collected 96 hours after incubation.

  1. SWI/SNF complex prevents lineage reversion and induces temporal patterning in neural stem cells.

    PubMed

    Eroglu, Elif; Burkard, Thomas R; Jiang, Yanrui; Saini, Nidhi; Homem, Catarina C F; Reichert, Heinrich; Knoblich, Juergen A

    2014-03-13

    Members of the SWI/SNF chromatin-remodeling complex are among the most frequently mutated genes in human cancer, but how they suppress tumorigenesis is currently unclear. Here, we use Drosophila neuroblasts to demonstrate that the SWI/SNF component Osa (ARID1) prevents tumorigenesis by ensuring correct lineage progression in stem cell lineages. We show that Osa induces a transcriptional program in the transit-amplifying population that initiates temporal patterning, limits self-renewal, and prevents dedifferentiation. We identify the Prdm protein Hamlet as a key component of this program. Hamlet is directly induced by Osa and regulates the progression of progenitors through distinct transcriptional states to limit the number of transit-amplifying divisions. Our data provide a mechanistic explanation for the widespread tumor suppressor activity of SWI/SNF. Because the Hamlet homologs Evi1 and Prdm16 are frequently mutated in cancer, this mechanism could well be conserved in human stem cell lineages. PAPERCLIP: PMID:24630726

  2. Soil moisture spatial and temporal patterns from a wireless sensor network test bed

    NASA Astrophysics Data System (ADS)

    Villalba, G.; Davis, T. W.; Liang, X.

    2014-12-01

    The dynamics of water movement through vegetated porous media is a complex problem with large variabilities over differing temporal and spatial scales. This study examines a multi-year wireless sensor network (WSN) collecting shallow subsurface (10 and 30 cm) soil moisture content and soil water potential. The study site, located at the Audubon Society of Western Pennsylvania's Beechwood Farms Nature Reserve, is one of the longest running WSNs of its kind. Despite the noisy nature of the collected data (e.g., in comparison to traditional data logger methods), the WSN, consisting of over 50 nodes with more than 100 sensors, provides critical information regarding catchment-scale spatiotemporal patterns of soil moisture and soil water potential within a forested hill-sloped region of southwestern Pennsylvania.

  3. Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation

    PubMed Central

    Busemeyer, Lucas; Ruckelshausen, Arno; Möller, Kim; Melchinger, Albrecht E.; Alheit, Katharina V.; Maurer, Hans Peter; Hahn, Volker; Weissmann, Elmar A.; Reif, Jochen C.; Würschum, Tobias

    2013-01-01

    To extend agricultural productivity by knowledge-based breeding and tailor varieties adapted to specific environmental conditions, it is imperative to improve our ability to assess the dynamic changes of the phenome of crops under field conditions. To this end, we have developed a precision phenotyping platform that combines various sensors for a non-invasive, high-throughput and high-dimensional phenotyping of small grain cereals. This platform yielded high prediction accuracies and heritabilities for biomass of triticale. Genetic variation for biomass accumulation was dissected with 647 doubled haploid lines derived from four families. Employing a genome-wide association mapping approach, two major quantitative trait loci (QTL) for biomass were identified and the genetic architecture of biomass accumulation was found to be characterized by dynamic temporal patterns. Our findings highlight the potential of precision phenotyping to assess the dynamic genetics of complex traits, especially those not amenable to traditional phenotyping. PMID:23942574

  4. Subject transfer BCI based on Composite Local Temporal Correlation Common Spatial Pattern.

    PubMed

    Hatamikia, Sepideh; Nasrabadi, Ali Motie

    2015-09-01

    In this paper, a subject transfer framework is proposed for the classification of Electroencephalogram (EEG) signals in brain-computer interfaces (BCIs). This study introduces a modification of Common Spatial Pattern (CSP) for subject transfer BCIs, where similar characteristics are considered to transfer knowledge from other subjects׳ data. With this aim, we proposed a new approach based on Composite Local Temporal Correlation CSP, namely Composite LTCCSP with selected subjects, which considers the similarity between subjects using Frobenius distance. The performance of the proposed method is compared with different methods like traditional CSP, Composite CSP, LTCCSP and Composite LTCCSP. Experimental results have shown that our proposed method has increased the performance compared to all these different methods. Furthermore, our results suggest that it is worth emphasizing the data of subjects with similar characteristics in a subject transfer diagram. The suggested framework, as demonstrated by experimental results, can obtain a positive knowledge transfer for enhancing the performance of BCIs. PMID:26103603

  5. A method for analyzing temporal patterns of variability of a time series from Poincare plots.

    PubMed

    Fishman, Mikkel; Jacono, Frank J; Park, Soojin; Jamasebi, Reza; Thungtong, Anurak; Loparo, Kenneth A; Dick, Thomas E

    2012-07-01

    The Poincaré plot is a popular two-dimensional, time series analysis tool because of its intuitive display of dynamic system behavior. Poincaré plots have been used to visualize heart rate and respiratory pattern variabilities. However, conventional quantitative analysis relies primarily on statistical measurements of the cumulative distribution of points, making it difficult to interpret irregular or complex plots. Moreover, the plots are constructed to reflect highly correlated regions of the time series, reducing the amount of nonlinear information that is presented and thereby hiding potentially relevant features. We propose temporal Poincaré variability (TPV), a novel analysis methodology that uses standard techniques to quantify the temporal distribution of points and to detect nonlinear sources responsible for physiological variability. In addition, the analysis is applied across multiple time delays, yielding a richer insight into system dynamics than the traditional circle return plot. The method is applied to data sets of R-R intervals and to synthetic point process data extracted from the Lorenz time series. The results demonstrate that TPV complements the traditional analysis and can be applied more generally, including Poincaré plots with multiple clusters, and more consistently than the conventional measures and can address questions regarding potential structure underlying the variability of a data set. PMID:22556398

  6. Spatial and temporal electroselection patterns in electric field stimulation of polarized luminescence from photosynthetic membrane vesicles

    PubMed Central

    Rosemberg, Yosef; Rozen, Philip; Malkin, Shmuel; Korenstein, Rafi

    1992-01-01

    Electroselection processes of charge recombination are manifested in the study of electric field induced polarized emission from photosynthetic membrane vesicles. The study explores the coupled spatial-temporal characteristics of electric field induced charge recombination by examining the dependence of the integrated polarized emission and the time dependent polarization on electric field strength. The experimental results were fitted to theoretical models by computer simulations employing empirical parameters. Simulation of the dependence of the integrated polarized components of emission on electric field strength, suggests field-dependent increased ratio between radiative and nonradiative rates of charge recombination. The observation that the initial polarization values are independent of electric field strength supports the assumption that electric field induced emission originates from the pole area and then spreads away from it towards the equator. The propagation rate of this electric field induced charge recombination from the pole area towards the equator is reflected by the decay of polarization which increases upon raising the electric field strength. Simulation of the polarization's decay, based on a calculated angle of 26.3 ± 0.4° between the transition moment of emission and the plane of the membrane, establishes coupled temporal spatial patterns of electroselection in intramembrane electron transfer invoked by exposing preilluminated photosynthetic vesicles to a homogeneous electric field. PMID:19431835

  7. Remote sensing captures varying temporal patterns of vegetation between human-altered and natural landscapes

    PubMed Central

    Roderick, George K.

    2015-01-01

    Global change has led to shifts in phenology, potentially disrupting species interactions such as plant–pollinator relationships. Advances in remote sensing techniques allow one to detect vegetation phenological diversity between different land use types, but it is not clear how this translates to other communities in the ecosystem. Here, we investigated the phenological diversity of the vegetation across a human-altered landscape including urban, agricultural, and natural land use types. We found that the patterns of change in the vegetation indices (EVI and NDVI) of human-altered landscapes are out of synchronization with the phenology in neighboring natural California grassland habitat. Comparing these findings to a spatio-temporal pollinator distribution dataset, EVI and NDVI were significant predictors of total bee abundance, a relationship that improved with time lags. This evidence supports the importance of differences in temporal dynamics between land use types. These findings also highlight the potential to utilize remote sensing data to make predictions for components of biodiversity that have tight vegetation associations, such as pollinators. PMID:26290795

  8. Scene-based correction of fixed pattern noise in hyperspectral image data using temporal reordering

    NASA Astrophysics Data System (ADS)

    Ratliff, Bradley M.; Kaufman, Jason R.

    2015-09-01

    Hyperspectral image data suffer from pixel-to-pixel response nonuniformity that degrades the imagery in the form of columnated striping noise. This nonuniformity, or fixed pattern noise (FPN), is typically compensated for through flat-field calibration procedures. FPN is a particularly challenging problem because the detector responsivities drift relative to one another in time, requiring that the sensor be periodically recalibrated. Both the rate and severity of the drift depend on a host of factors that result in varying levels of residual calibration error being present within the data at all times. Scene-based nonuniformity correction (SBNUC) algorithms estimate and remove FPN by exploiting content within the scene data and are often necessary to acceptably remove sensor artifacts for subpixel target detection applications. We present results from two SBNUC techniques that reduce residual FPN and improve target signal-to-clutter ratio. We make the observation that temporally reordering the data in conjunction with the use of spatial ratios or differentials results in algorithms that require a low number of temporal data samples to reliably correct for FPN with minimal introduction of image artifacts. Additionally, application of the algorithms within the principal components domain can further improve their correction ability.

  9. Remote sensing captures varying temporal patterns of vegetation between human-altered and natural landscapes.

    PubMed

    Leong, Misha; Roderick, George K

    2015-01-01

    Global change has led to shifts in phenology, potentially disrupting species interactions such as plant-pollinator relationships. Advances in remote sensing techniques allow one to detect vegetation phenological diversity between different land use types, but it is not clear how this translates to other communities in the ecosystem. Here, we investigated the phenological diversity of the vegetation across a human-altered landscape including urban, agricultural, and natural land use types. We found that the patterns of change in the vegetation indices (EVI and NDVI) of human-altered landscapes are out of synchronization with the phenology in neighboring natural California grassland habitat. Comparing these findings to a spatio-temporal pollinator distribution dataset, EVI and NDVI were significant predictors of total bee abundance, a relationship that improved with time lags. This evidence supports the importance of differences in temporal dynamics between land use types. These findings also highlight the potential to utilize remote sensing data to make predictions for components of biodiversity that have tight vegetation associations, such as pollinators. PMID:26290795

  10. Defining high-flow seasons using temporal streamflow patterns from a global model

    NASA Astrophysics Data System (ADS)

    Lee, D.; Ward, P.; Block, P.

    2015-11-01

    Globally, flood catastrophes lead all natural hazards in terms of impacts on society, causing billions of dollars of damages annually. Here, a novel approach to defining high-flow seasons (3-month) globally is presented by identifying temporal patterns of streamflow. The main high-flow season is identified using a volume-based threshold technique and the PCR-GLOBWB model. In comparison with observations, 40 % (50 %) of locations at a station (sub-basin) scale have identical peak months and 81 % (89 %) are within 1 month, indicating fair agreement between modeled and observed high-flow seasons. Minor high-flow seasons are also defined for bi-modal flow regimes. Identified major and minor high-flow seasons together are found to well represent actual flood records from the Dartmouth Flood Observatory, further substantiating the model's ability to reproduce the appropriate high-flow season. These high-spatial-resolution high-flow seasons and associated performance metrics allow for an improved understanding of temporal characterization of streamflow and flood potential, causation, and management. This is especially attractive for regions with limited observations and/or little capacity to develop early warning flood systems.

  11. a Three-Step Spatial-Temporal Clustering Method for Human Activity Pattern Analysis

    NASA Astrophysics Data System (ADS)

    Huang, W.; Li, S.; Xu, S.

    2016-06-01

    How people move in cities and what they do in various locations at different times form human activity patterns. Human activity pattern plays a key role in in urban planning, traffic forecasting, public health and safety, emergency response, friend recommendation, and so on. Therefore, scholars from different fields, such as social science, geography, transportation, physics and computer science, have made great efforts in modelling and analysing human activity patterns or human mobility patterns. One of the essential tasks in such studies is to find the locations or places where individuals stay to perform some kind of activities before further activity pattern analysis. In the era of Big Data, the emerging of social media along with wearable devices enables human activity data to be collected more easily and efficiently. Furthermore, the dimension of the accessible human activity data has been extended from two to three (space or space-time) to four dimensions (space, time and semantics). More specifically, not only a location and time that people stay and spend are collected, but also what people "say" for in a location at a time can be obtained. The characteristics of these datasets shed new light on the analysis of human mobility, where some of new methodologies should be accordingly developed to handle them. Traditional methods such as neural networks, statistics and clustering have been applied to study human activity patterns using geosocial media data. Among them, clustering methods have been widely used to analyse spatiotemporal patterns. However, to our best knowledge, few of clustering algorithms are specifically developed for handling the datasets that contain spatial, temporal and semantic aspects all together. In this work, we propose a three-step human activity clustering method based on space, time and semantics to fill this gap. One-year Twitter data, posted in Toronto, Canada, is used to test the clustering-based method. The results show that the

  12. Analysis of Spatio-Temporal Traffic Patterns Based on Pedestrian Trajectories

    NASA Astrophysics Data System (ADS)

    Busch, S.; Schindler, T.; Klinger, T.; Brenner, C.

    2016-06-01

    For driver assistance and autonomous driving systems, it is essential to predict the behaviour of other traffic participants. Usually, standard filter approaches are used to this end, however, in many cases, these are not sufficient. For example, pedestrians are able to change their speed or direction instantly. Also, there may be not enough observation data to determine the state of an object reliably, e.g. in case of occlusions. In those cases, it is very useful if a prior model exists, which suggests certain outcomes. For example, it is useful to know that pedestrians are usually crossing the road at a certain location and at certain times. This information can then be stored in a map which then can be used as a prior in scene analysis, or in practical terms to reduce the speed of a vehicle in advance in order to minimize critical situations. In this paper, we present an approach to derive such a spatio-temporal map automatically from the observed behaviour of traffic participants in everyday traffic situations. In our experiments, we use one stationary camera to observe a complex junction, where cars, public transportation and pedestrians interact. We concentrate on the pedestrians trajectories to map traffic patterns. In the first step, we extract trajectory segments from the video data. These segments are then clustered in order to derive a spatial model of the scene, in terms of a spatially embedded graph. In the second step, we analyse the temporal patterns of pedestrian movement on this graph. We are able to derive traffic light sequences as well as the timetables of nearby public transportation. To evaluate our approach, we used a 4 hour video sequence. We show that we are able to derive traffic light sequences as well as time tables of nearby public transportation.

  13. Temporal patterns of odorant receptor gene expression in adult and aged mice.

    PubMed

    Khan, Mona; Vaes, Evelien; Mombaerts, Peter

    2013-11-01

    In the mouse, the sense of smell relies predominantly on the expression of ~1200 odorant receptor (OR) genes in the main olfactory epithelium (MOE). Each mature olfactory sensory neuron (OSN) in the MOE is thought to express just one of these OR genes; conversely, an OR gene is expressed in thousands to tens of thousands of OSNs per mouse. Here, we have characterized temporal patterns of OR gene expression in a cohort of inbred C57BL6/N mice from the Aged Rodent Colonies of the National Institute on Aging. We applied the NanoString multiplex platform to quantify RNA abundance for 531 OR genes in whole olfactory mucosa (WOM) tissue samples. The five study groups were females aged 2, 6, 12, 18, and 31 months (mo). We classified the 531 temporal patterns using a step-down quadratic regression method for time course analysis. The majority of OR genes (58.4%) are classified as flat: there is no significant difference from a horizontal line within this time window. There are 32.8% of OR genes with a downward profile, 7.2% with an upward profile, and 1.7% with a convex or concave profile. But the magnitude of these decreases and increases tends to be small: only 4.3% of OR genes are differentially expressed (DE) at 31 mo compared to 2 mo. Interestingly, the variances of NanoString counts for individual OR genes are homogeneous among the age groups. Our analyses of these 15,930 OR gene expression data of C57BL6/N mice that were raised and housed under well-controlled conditions indicate that OR gene expression at the MOE level is intrinsically stable. PMID:23962816

  14. Temporal variability in winter travel patterns of Yellowstone bison: the effects of road grooming.

    PubMed

    Bruggeman, Jason E; Garrott, Robert A; Bjornlie, Daniel D; White, P J; Watson, Fred G R; Borkowski, John

    2006-08-01

    The influence of winter recreation on wildlife in Yellowstone National Park (YNP), Wyoming and Montana, USA, is a controversial issue. In particular, the effects of road grooming, done to facilitate snowmobile and snowcoach travel, on bison (Bison bison) ecology are under debate. We collected data during winters, from 1997 to 2005, on bison road use, off-road travel, and activity budgets to quantify temporal trends in the amount of bison road and off-road travel and to identify the ecological factors affecting bison movements and use of the groomed road system in the Madison-Gibbon-Firehole (MGF) area of YNP. Using model comparison techniques, we found bison travel patterns to be influenced by multiple, interacting effects. Road travel was negatively correlated with road grooming, and we found no evidence that bison preferentially used groomed roads during winter. Snow water equivalent, bison density, and the springtime melt period were positively correlated with both bison road and off-road travel. From behavioral scans on 68,791 bison, we found that travel is only a small percentage (11%) of all bison activity, with foraging comprising 67% of observations. Also, only 7% of traveling bison and 30% of foraging bison were displacing snow, and we suggest foraging, rather than traveling, is likely the major energetic cost to bison in winter. Bison utilize their own trail network, connecting foraging areas using stream corridors, geothermal pathways, and self-groomed travel routes. Our results indicate that temporal patterns in bison road travel are a manifestation of general travel behavior and that groomed roads in the MGF do not appear to be a major factor influencing bison ecology and spatial redistribution. We suggest that the changes in bison spatial dynamics during the past three decades have likely been the result of the natural phenomenon of density-dependent range expansion, rather than having been caused by the anthropogenic influence of road grooming. PMID

  15. The spatial and temporal distributions of arthropods in forest canopies: uniting disparate patterns with hypotheses for specialisation.

    PubMed

    Wardhaugh, Carl W

    2014-11-01

    Arguably the majority of species on Earth utilise tropical rainforest canopies, and much progress has been made in describing arboreal assemblages, especially for arthropods. The most commonly described patterns for tropical rainforest insect communities are host specificity, spatial specialisation (predominantly vertical stratification), and temporal changes in abundance (seasonality and circadian rhythms). Here I review the recurrent results with respect to each of these patterns and discuss the evolutionary selective forces that have generated them in an attempt to unite these patterns in a holistic evolutionary framework. I propose that species can be quantified along a generalist-specialist scale not only with respect to host specificity, but also other spatial and temporal distribution patterns, where specialisation is a function of the extent of activity across space and time for particular species. When all of these distribution patterns are viewed through the paradigm of specialisation, hypotheses that have been proposed to explain the evolution of host specificity can also be applied to explain the generation and maintenance of other spatial and temporal distribution patterns. The main driver for most spatial and temporal distribution patterns is resource availability. Generally, the distribution of insects follows that of the resources they exploit, which are spatially stratified and vary temporally in availability. Physiological adaptations are primarily important for host specificity, where nutritional and chemical variation among host plants in particular, but also certain prey species and fungi, influence host range. Physiological tolerances of abiotic conditions are also important for explaining the spatial and temporal distributions of some insect species, especially in drier forest environments where desiccation is an ever-present threat. However, it is likely that for most species in moist tropical rainforests, abiotic conditions are valuable

  16. Spatio-Temporal Transmission Patterns of Black-Band Disease in a Coral Community

    PubMed Central

    Zvuloni, Assaf; Artzy-Randrup, Yael; Stone, Lewi; Kramarsky-Winter, Esti; Barkan, Roy; Loya, Yossi

    2009-01-01

    Background Transmission mechanisms of black-band disease (BBD) in coral reefs are poorly understood, although this disease is considered to be one of the most widespread and destructive coral infectious diseases. The major objective of this study was to assess transmission mechanisms of BBD in the field based on the spatio-temporal patterns of the disease. Methodology/Principal Findings 3,175 susceptible and infected corals were mapped over an area of 10×10 m in Eilat (northern Gulf of Aqaba, Red Sea) and the distribution of the disease was examined monthly throughout almost two full disease cycles (June 2006–December 2007). Spatial and spatio-temporal analyses were applied to infer the transmission pattern of the disease and to calculate key epidemiological parameters such as (basic reproduction number). We show that the prevalence of the disease is strongly associated with high water temperature. When water temperatures rise and disease prevalence increases, infected corals exhibit aggregated distributions on small spatial scales of up to 1.9 m. Additionally, newly-infected corals clearly appear in proximity to existing infected corals and in a few cases in direct contact with them. We also present and test a model of water-borne infection, indicating that the likelihood of a susceptible coral becoming infected is defined by its spatial location and by the relative spatial distribution of nearby infected corals found in the site. Conclusions/Significance Our results provide evidence that local transmission, but not necessarily by direct contact, is likely to be an important factor in the spread of the disease over the tested spatial scale. In the absence of potential disease vectors with limited mobility (e.g., snails, fireworms) in the studied site, water-borne infection is likely to be a significant transmission mechanism of BBD. Our suggested model of water-borne transmission supports this hypothesis. The spatio-temporal analysis also points out that

  17. The pattern of acoustic emission under fluid initiation of failure: Laboratory modeling

    NASA Astrophysics Data System (ADS)

    Potanina, M. G.; Smirnov, V. B.; Ponomarev, A. V.; Bernard, P.; Lyubushin, A. A.; Shoziyoev, Sh. P.

    2015-03-01

    The results of the laboratory experiment on the initiation of acoustic emission in a loaded specimen by wetting a part of its surface without a material increase in the pore pressure are analyzed. The experiment was conducted on the lever press at the Schmidt Institute of Physics of the Earth, Russian Academy of Sciences (Sobolev and Ponomarev, 2011). Infusion of water into the surface of the specimen initiated the swarm acoustic emission, which, after having migrated to the area with higher stresses, culminated in the formation of a macrofracture. The analysis revealed the regularities in the excitation and relaxation of the acoustic activity in response to different types of initiation: the forced excitation by stepwise increasing the load at the initial stage of the experiment; excitation resulting from fluid diffusion, which can be associated with the reduction in the material strength due to wetting; excitation that reflects the preparation for the emergence of a macrofracture in the area with the highest Coulomb stresses; and spontaneous excitation of swarm activity at the stage of relaxation of the acoustic emission after the formation of a macrofracture. The features revealed in the acoustic time series at the stages of excitation and decay of the emission are qualitatively similar to the trends identified in the variations of seismic parameters during the natural swarms, preparation of the sources of the strong earthquakes, and relaxation of the aftershocks. In particular, the obtained results support the hypothesis of fluid initiation of nonvolcanic seismic swarms.

  18. Acoustic telemetry reveals large-scale migration patterns of walleye in Lake Huron

    USGS Publications Warehouse

    Hayden, Todd A.; Holbrook, Christopher; Fielder, David G.; Vandergoot, Christopher S.; Bergstedt, Roger A.; Dettmers, John M.; Krueger, Charles C.; Cooke, Steven J.

    2014-01-01

    Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n = 199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n = 140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron.

  19. Temporal lobe sulco-gyral pattern anomalies in schizophrenia: an in vivo MR three-dimensional surface rendering study.

    PubMed

    Kikinis, R; Shenton, M E; Gerig, G; Hokama, H; Haimson, J; O'Donnell, B F; Wible, C G; McCarley, R W; Jolesz, F A

    1994-11-21

    Neuroanatomical and histological findings from post-mortem brains, as well as in vivo findings from magnetic resonance imaging (MRI) studies, suggest the presence of morphologic temporal lobe abnormalities in schizophrenia. To determine whether or not sulco-gyral pattern abnormalities in the temporal lobe could be detected in vivo, we applied computerized surface rendering techniques to MR data sets in order to make both qualitative and quantitative analyses of three-dimensional reconstructions of the temporal and frontal cortex in 15 schizophrenic patients and 15 normal controls. The qualitative analysis, based on a visual classification of the temporal lobe sulco-gyral pattern by 4 raters blind to diagnosis, showed that in schizophrenics there was a more vertical orientation to the sulci in the left temporal lobe, with an interrupted course of sulci due to gyri coursing across the sulci. Normal controls, in contrast, showed a more horizontal orientation with no interruptions. These findings were supported by the quantitative analysis, where more sulcal lines, representing an interrupted course of sulci, were observed in the temporal lobes (more pronounced on the left) in schizophrenics than in normal controls. These data suggest that some of the abnormalities observed in schizophrenia may have their origin in alterations occurring during the course of neurodevelopment when the sulco-gyral pattern is determined. PMID:7891892

  20. Using dynamic Brownian bridge movement modelling to measure temporal patterns of habitat selection.

    PubMed

    Byrne, Michael E; Clint McCoy, J; Hinton, Joseph W; Chamberlain, Michael J; Collier, Bret A

    2014-09-01

    Accurately describing animal space use is vital to understanding how wildlife use habitat. Improvements in GPS technology continue to facilitate collection of telemetry data at high spatial and temporal resolutions. Application of the recently introduced dynamic Brownian bridge movement model (dBBMM) to such data is promising as the method explicitly incorporates the behavioural heterogeneity of a movement path into the estimated utilization distribution (UD). Utilization distributions defining space use are normally estimated for time-scales ranging from weeks to months, obscuring much of the fine-scale information available from high-volume GPS data sets. By accounting for movement heterogeneity, the dBBMM provides a rigorous, behaviourally based estimate of space use between each set of relocations. Focusing on UDs generated between individual sets of locations allows us to quantify fine-scale circadian variation in habitat use. We used the dBBMM to estimate UDs bounding individual time steps for three terrestrial species with different life histories to illustrate how the method can be used to identify fine-scale variations in habitat use. We also demonstrate how dBBMMs can be used to characterize circadian patterns of habitat selection and link fine-scale patterns of habitat use to behaviour. We observed circadian patterns of habitat use that varied seasonally for a white-tailed deer (Odocoileus virginianus) and coyote (Canis latrans). We found seasonal patterns in selection by the white-tailed deer and were able to link use of conifer forests and agricultural fields to behavioural state of the coyote. Additionally, we were able to quantify the date in which a Rio Grande wild turkey (Meleagris gallopavo intermedia) initiated laying as well as when during the day, she was most likely to visit the nest site to deposit eggs. The ability to quantify circadian patterns of habitat use may have important implications for research and management of wildlife

  1. Spatio-temporal patterns of soil water storage under dryland agriculture at the watershed scale

    NASA Astrophysics Data System (ADS)

    Ibrahim, Hesham M.; Huggins, David R.

    2011-07-01

    SummarySpatio-temporal patterns of soil water are major determinants of crop yield potential in dryland agriculture and can serve as the basis for delineating precision management zones. Soil water patterns can vary significantly due to differences in seasonal precipitation, soil properties and topographic features. In this study we used empirical orthogonal function (EOF) analysis to characterize the spatial variability of soil water at the Washington State University Cook Agronomy Farm (CAF) near Pullman, WA. During the period 1999-2006, the CAF was divided into three roughly equal blocks (A, B, and C), and soil water at 0.3 m intervals to a depth of 1.5 m measured gravimetrically at approximately one third of the 369 geo-referenced points on the 37-ha watershed. These data were combined with terrain attributes, soil bulk density and apparent soil conductivity (EC a). The first EOF generated from the three blocks explained 73-76% of the soil water variability. Field patterns of soil water based on EOF interpolation varied between wet and dry conditions during spring and fall seasons. Under wet conditions, elevation and wetness index were the dominant factors regulating the spatial patterns of soil water. As soil dries out during summer and fall, soil properties (EC a and bulk density) become more important in explaining the spatial patterns of soil water. The EOFs generated from block B, which represents average topographic and soil properties, provided better estimates of soil water over the entire watershed with larger Nash-Sutcliffe Coefficient of Efficiency (NSCE) values, especially when the first two EOFs were retained. Including more than the first two EOFs did not significantly increase the NSCE of soil water estimate. The EOF interpolation method to estimate soil water variability worked slightly better during spring than during fall, with average NSCE values of 0.23 and 0.20, respectively. The predictable patterns of stored soil water in the spring could

  2. Spatio-temporal patterns of throughfall and solute deposition in an open tropical rain forest

    NASA Astrophysics Data System (ADS)

    Zimmermann, Alexander; Germer, Sonja; Neill, Christopher; Krusche, Alex V.; Elsenbeer, Helmut

    2008-10-01

    SummaryThe brief interaction of precipitation with a forest canopy can create a high spatial variability of both throughfall and solute deposition. We hypothesized that (i) the variability in natural forest systems is high but depends on system-inherent stability, (ii) the spatial variability of solute deposition shows seasonal dynamics depending on the increase in rainfall frequency, and (iii) spatial patterns persist only in the short-term. The study area in the north-western Brazilian state of Rondônia is subject to a climate with a distinct wet and dry season. We collected rain and throughfall on an event basis during the early wet season ( n = 14) and peak of the wet season ( n = 14) and analyzed the samples for pH and concentrations of NH4+, Na +, K +, Ca 2+, Mg 2+, Cl -, NO3-, SO42- and DOC. The coefficient of variation for throughfall based on both sampling intervals was 29%, which is at the lower end of values reported from other tropical forest sites, but which is higher than in most temperate forests. Coefficients of variation of solute deposition ranged from 29% to 52%. This heterogeneity of solute deposition is neither particularly high nor particularly low compared with a range of tropical and temperate forest ecosystems. We observed an increase in solute deposition variability with the progressing wet season, which was explained by a negative correlation between heterogeneity of solute deposition and antecedent dry period. The temporal stability of throughfall patterns was low during the early wet season, but gained in stability as the wet season progressed. We suggest that rapid plant growth at the beginning of the rainy season is responsible for the lower stability, whereas less vegetative activity during the later rainy season might favor the higher persistence of "hot" and "cold" spots of throughfall quantities. The relatively high stability of throughfall patterns during later stages of the wet season may influence processes at the forest floor

  3. Effects of subsampling of passive acoustic recordings on acoustic metrics.

    PubMed

    Thomisch, Karolin; Boebel, Olaf; Zitterbart, Daniel P; Samaran, Flore; Van Parijs, Sofie; Van Opzeeland, Ilse

    2015-07-01

    Passive acoustic monitoring is an important tool in marine mammal studies. However, logistics and finances frequently constrain the number and servicing schedules of acoustic recorders, requiring a trade-off between deployment periods and sampling continuity, i.e., the implementation of a subsampling scheme. Optimizing such schemes to each project's specific research questions is desirable. This study investigates the impact of subsampling on the accuracy of two common metrics, acoustic presence and call rate, for different vocalization patterns (regimes) of baleen whales: (1) variable vocal activity, (2) vocalizations organized in song bouts, and (3) vocal activity with diel patterns. To this end, above metrics are compared for continuous and subsampled data subject to different sampling strategies, covering duty cycles between 50% and 2%. The results show that a reduction of the duty cycle impacts negatively on the accuracy of both acoustic presence and call rate estimates. For a given duty cycle, frequent short listening periods improve accuracy of daily acoustic presence estimates over few long listening periods. Overall, subsampling effects are most pronounced for low and/or temporally clustered vocal activity. These findings illustrate the importance of informed decisions when applying subsampling strategies to passive acoustic recordings or analyses for a given target species. PMID:26233026

  4. Does Sex Matter? Temporal and Spatial Patterns of Cougar-Human Conflict in British Columbia

    PubMed Central

    Teichman, Kristine J.; Cristescu, Bogdan; Nielsen, Scott E.

    2013-01-01

    Wildlife-human conflicts occur wherever large carnivores overlap human inhabited areas. Conflict mitigation can be facilitated by understanding long-term dynamics and examining sex-structured conflict patterns. Predicting areas with high probability of conflict helps focus management strategies in order to proactively decrease carnivore mortality. We investigated the importance of cougar (Puma concolor) habitat, human landscape characteristics and the combination of habitat and human features on the temporal and spatial patterns of cougar-human conflicts in British Columbia. Conflicts (n = 1,727; 1978–2007) involved similar numbers of male and female cougars with conflict rate decreasing over the past decade. Conflicts were concentrated within the southern part of the province with the most conflicts per unit area occurring on Vancouver Island. For both sexes, the most supported spatial models for the most recent (1998–2007) conflicts contained both human and habitat variables. Conflicts were more likely to occur close to roads, at intermediate elevations and far from the northern edge of the cougar distribution range in British Columbia. Male cougar conflicts were more likely to occur in areas of intermediate human density. Unlike cougar conflicts in other regions, cattle density was not a significant predictor of conflict location. With human populations expanding, conflicts are expected to increase. Conservation tools, such as the maps predicting conflict hotspots from this study, can help focus management efforts to decrease carnivore-human conflict. PMID:24040312

  5. Precipitation extremes in the Yangtze River Basin, China: regional frequency and spatial-temporal patterns

    NASA Astrophysics Data System (ADS)

    Chen, Yongqin David; Zhang, Qiang; Xiao, Mingzhong; Singh, Vijay P.; Leung, Yee; Jiang, Luguang

    2014-05-01

    Regional frequency analysis and spatial-temporal patterns of precipitation extremes are investigated based on daily precipitation data covering 1960-2009 using the index-flood L-moments method together with some advanced statistical tests and spatial analysis techniques. The results indicate that: (1) the entire Yangtze River basin can be divided into six homogeneous regions in terms of extreme daily precipitation index. Goodness-of-fit test indicates that Pearson type III (PE3, three parameters), general extreme-value (GEV, three parameters), and general normal (GNO, three parameters) perform well in fitting regional precipitation extremes; (2) the regional growth curves for each homogeneous region with 99 % error bands show that the quantile estimates are reliable enough and can be used when return periods are less than 100 years, and the results indicate that extreme precipitation events are highly probable to occur in regions V and VI, and hence higher risk of floods and droughts; and (3) spatial patterns of annual extreme daily precipitation with return period of 20 years indicate that precipitation amount increases gradually from the upper to the lower Yangtze River basin, showing higher risks of floods and droughts in the middle and lower Yangtze River basin, and this result is in good agreement with those derived from regional growth curves.

  6. Spatial and temporal patterns of nonindigenous fish introductions in the United States

    USGS Publications Warehouse

    Nico, L.G.; Fuller, P.L.

    1999-01-01

    In 1978 biologists in Gainesville, Florida, began compiling records on the distribution and status of nonindigenous fishes known in U.S. inland waters. The database, now in electronic format, currently contains approximately 17,000 records representing more than 500 nonindigenous fish taxa (i.e., species, hybrids, and unidentified forms). Of these taxa, 317 (61%) are native to the United States but have been introduced by humans into U.S. drainages outside their natural geographic ranges; 185 (35%) are fishes introduced from foreign countries; and 22 (4%) are hybrids. Of the introduced foreign fish taxa, 71 (38%) are species that have established (i.e., reproducing) or possibly established populations in open U.S. waters. The database is a useful tool for natural resource managers and other decision makers. Although we periodically revise records and constantly enter new ones, our database is fairly updated; thus, we are able to more thoroughly analyze patterns of introduction and the spread of nonindigenous fishes within the United States. Moreover, information gaps exposed by the data set should serve to stimulate and guide future research on nonindigenous fishes. This paper introduces our database and provides an overview of temporal and spatial patterns of nonindigenous fish distributions in U.S. inland waters.

  7. Does sex matter? Temporal and spatial patterns of cougar-human conflict in British Columbia.

    PubMed

    Teichman, Kristine J; Cristescu, Bogdan; Nielsen, Scott E

    2013-01-01

    Wildlife-human conflicts occur wherever large carnivores overlap human inhabited areas. Conflict mitigation can be facilitated by understanding long-term dynamics and examining sex-structured conflict patterns. Predicting areas with high probability of conflict helps focus management strategies in order to proactively decrease carnivore mortality. We investigated the importance of cougar (Puma concolor) habitat, human landscape characteristics and the combination of habitat and human features on the temporal and spatial patterns of cougar-human conflicts in British Columbia. Conflicts (n = 1,727; 1978-2007) involved similar numbers of male and female cougars with conflict rate decreasing over the past decade. Conflicts were concentrated within the southern part of the province with the most conflicts per unit area occurring on Vancouver Island. For both sexes, the most supported spatial models for the most recent (1998-2007) conflicts contained both human and habitat variables. Conflicts were more likely to occur close to roads, at intermediate elevations and far from the northern edge of the cougar distribution range in British Columbia. Male cougar conflicts were more likely to occur in areas of intermediate human density. Unlike cougar conflicts in other regions, cattle density was not a significant predictor of conflict location. With human populations expanding, conflicts are expected to increase. Conservation tools, such as the maps predicting conflict hotspots from this study, can help focus management efforts to decrease carnivore-human conflict. PMID:24040312

  8. Large-Scale Spatio-Temporal Patterns of Mediterranean Cephalopod Diversity.

    PubMed

    Keller, Stefanie; Bartolino, Valerio; Hidalgo, Manuel; Bitetto, Isabella; Casciaro, Loredana; Cuccu, Danila; Esteban, Antonio; Garcia, Cristina; Garofalo, Germana; Josephides, Marios; Jadaud, Angelique; Lefkaditou, Evgenia; Maiorano, Porzia; Manfredi, Chiara; Marceta, Bojan; Massutí, Enric; Micallef, Reno; Peristeraki, Panagiota; Relini, Giulio; Sartor, Paolo; Spedicato, Maria Teresa; Tserpes, George; Quetglas, Antoni

    2016-01-01

    Species diversity is widely recognized as an important trait of ecosystems' functioning and resilience. Understanding the causes of diversity patterns and their interaction with the environmental conditions is essential in order to effectively assess and preserve existing diversity. While diversity patterns of most recurrent groups such as fish are commonly studied, other important taxa such as cephalopods have received less attention. In this work we present spatio-temporal trends of cephalopod diversity across the entire Mediterranean Sea during the last 19 years, analysing data from the annual bottom trawl survey MEDITS conducted by 5 different Mediterranean countries using standardized gears and sampling protocols. The influence of local and regional environmental variability in different Mediterranean regions is analysed applying generalized additive models, using species richness and the Shannon Wiener index as diversity descriptors. While the western basin showed a high diversity, our analyses do not support a steady eastward decrease of diversity as proposed in some previous studies. Instead, high Shannon diversity was also found in the Adriatic and Aegean Seas, and high species richness in the eastern Ionian Sea. Overall diversity did not show any consistent trend over the last two decades. Except in the Adriatic Sea, diversity showed a hump-shaped trend with depth in all regions, being highest between 200-400 m depth. Our results indicate that high Chlorophyll a concentrations and warmer temperatures seem to enhance species diversity, and the influence of these parameters is stronger for richness than for Shannon diversity. PMID:26760965

  9. Temporal, spatial, and between-host comparisons of patterns of parasitism in lake zooplankton.

    PubMed

    Duffy, Meghan A; Cáceres, Carla E; Hall, Spencer R; Tessier, Alan J; Ives, Anthony R

    2010-11-01

    In nature, multiple parasite species infect multiple host species and are influenced by processes operating across different spatial and temporal scales. Data sets incorporating these complexities offer exciting opportunities to examine factors that shape epidemics. We present a method using generalized linear mixed models in a multilevel modeling framework to analyze patterns of variances and correlations in binomially distributed prevalence data. We then apply it to a multi-lake, multiyear data set involving two Daphnia host species and nine microparasite species. We found that the largest source of variation in parasite prevalence was the species identities of host-parasite pairs, indicating strong host-parasite specificity. Within host-parasite combinations, spatial variation (among lakes) exceeded interannual variation. This suggests that factors promoting differences among lakes (e.g., habitat characteristics and species interactions) better explain variation in peak infection prevalence in our data set than factors driving differences among years (e.g., climate). Prevalences of parasites in D. dentifera were more positively correlated than those for D. pulicaria, suggesting that similar factors influenced epidemic size among parasites in D. dentifera. Overall, this study demonstrates a method for parsing patterns of variation and covariation in infection prevalence data, providing greater insight into the relative importance of different underlying drivers of parasitism. PMID:21141193

  10. Large-Scale Spatio-Temporal Patterns of Mediterranean Cephalopod Diversity

    PubMed Central

    Keller, Stefanie; Bartolino, Valerio; Hidalgo, Manuel; Bitetto, Isabella; Casciaro, Loredana; Cuccu, Danila; Esteban, Antonio; Garcia, Cristina; Garofalo, Germana; Josephides, Marios; Jadaud, Angelique; Lefkaditou, Evgenia; Maiorano, Porzia; Manfredi, Chiara; Marceta, Bojan; Massutí, Enric; Micallef, Reno; Peristeraki, Panagiota; Relini, Giulio; Sartor, Paolo; Spedicato, Maria Teresa; Tserpes, George; Quetglas, Antoni

    2016-01-01

    Species diversity is widely recognized as an important trait of ecosystems’ functioning and resilience. Understanding the causes of diversity patterns and their interaction with the environmental conditions is essential in order to effectively assess and preserve existing diversity. While diversity patterns of most recurrent groups such as fish are commonly studied, other important taxa such as cephalopods have received less attention. In this work we present spatio-temporal trends of cephalopod diversity across the entire Mediterranean Sea during the last 19 years, analysing data from the annual bottom trawl survey MEDITS conducted by 5 different Mediterranean countries using standardized gears and sampling protocols. The influence of local and regional environmental variability in different Mediterranean regions is analysed applying generalized additive models, using species richness and the Shannon Wiener index as diversity descriptors. While the western basin showed a high diversity, our analyses do not support a steady eastward decrease of diversity as proposed in some previous studies. Instead, high Shannon diversity was also found in the Adriatic and Aegean Seas, and high species richness in the eastern Ionian Sea. Overall diversity did not show any consistent trend over the last two decades. Except in the Adriatic Sea, diversity showed a hump-shaped trend with depth in all regions, being highest between 200–400 m depth. Our results indicate that high Chlorophyll a concentrations and warmer temperatures seem to enhance species diversity, and the influence of these parameters is stronger for richness than for Shannon diversity. PMID:26760965

  11. Spatial and temporal patterns of micropollutants upstream and downstream of 24 WWTPs across Switzerland

    NASA Astrophysics Data System (ADS)

    Spycher, Barbara; Deuber, Fabian; Kistler, David; Burdon, Frank; Reyes, Marta; Alder, Alfredo C.; Joss, Adriano; Eggen, Rik; Singer, Heinz; Stamm, Christian

    2015-04-01

    Treated wastewater is an important source of micropollutants in many streams. These chemicals consist of very diverse set of compounds that may vary in space and time. In order to improve our understanding of such spatio-temporal patterns of micropollutants in surface waters, we compared upstream and downstream locations at 24 sites across the Swiss Plateau and Jura (12 sites in the 2013 campaign, 12 sites during the 2014 campaign). Each site represents the most upstream treatment plant in the corresponding catchment. This survey is part of the interdisciplinary, Eawag-wide research project EcoImpact that aims at elucidating the ecological effects of micropollutants on stream ecosystems. In 2013, a broad analytical screening was applied to samples collected during winter (January) and summer conditions (June). Based in these results, the bi-monthly samples obtained in 2014 were analysed for a set of about 60 selected organic micropollutants and 10 heavy metals. The screening results demonstrate that generally pharmaceuticals, artificial sweeteners and corrosion inhibitors make up the largest part of the organic micropollutants. Pesticides including biocides and plant protection products are also regularly found but at lower concentrations. This presentation will analyse the variability of the micropollutant patterns across the different sites and how upstream conditions and the wastewater composition changes with season.

  12. NFI-C2 temporal-spatial expression and cellular localization pattern during tooth formation.

    PubMed

    Lamani, Ejvis; Gluhak-Heinrich, Jelica; MacDougall, Mary

    2015-12-01

    Currently, little is known regarding critical signaling pathways during later stages of tooth development, especially those associated with root formation. Nfi-c null mice, lacking molar roots, have implicated the transcription factor NFI-C as having an essential role in root development. Previously, we identified three NFI-C isoforms expressed in dental tissues with NFI-C2 being the major transcript. However, the expression pattern of the NFI-C2 protein is not characterized. In this study we performed in situ hybridization and immunohistochemistry using isoform specific probes. We show the production of a NFI-C2 peptide antibody, its characterization, the temporal-spatial expression pattern of the NFI-C2 protein during odontogenesis and sub-cellular localization in dental cells. Moderate NFI-C2 staining, as early as bud stage, was detected mostly in the condensing dental ectomesenchyme. This staining intensified within the dental pulp at later stages culminating in high expression in the dentin producing odontoblasts. The dental epithelium showed slight staining until cytodifferentiation of enamel organ into ameloblasts and stratum intermedium. During root formation NFI-C2 expression was high in the Hertwig's epithelial root sheath and later was found in the fully developed root and its supporting tissues. NFI-C2 cellular staining was cytosolic, associated with the Golgi, and nuclear. These data suggest a broader role for NFI-C during tooth formation than limited to root and periodontal ligament development. PMID:26687982

  13. Multi-instrument Method to Map Spatial and Temporal Patterns of Snowmelt Infiltration

    NASA Astrophysics Data System (ADS)

    Hyde, K.; Beverly, D.; Thayer, D.; Speckman, H. N.; Parsekian, A.; Kelleners, T.

    2015-12-01

    Mapping spatial patterns of relative soil moisture over time may improve understanding of snowmelt infiltration processes in heterogeneous systems. Conventional soil water measurement methods disturb soil properties and rocky materials generally limit installation of monitoring instruments to shallow depths in mountainous landscapes with snowmelt dominated hydrology. Modifications to existing technology combined with low impact installation methods provide high temporal and spatial resolution of relative soil moisture as well as a temperature profile and water table level. Closely spaced (10cm) electrical resistance pads are combined in a small diameter (2.54 cm) tube with temperature probes each 50cm, a pressure transducer, and a tube to extract groundwater for stable isotope analysis. This vertical probe array (VPA) extends 3.2m and is installed in a small diameter (4 cm) bore using a backpack drill limiting soil disturbance. Two VPAs are installed in the Snowy Range of Wyoming, one in a forested mountainous environment impacted by mortality by insects and disease and the other (limited to resistance pads only) in recently burned sagelands. Each VPA is co-located with meteorological stations. Eddy-covariance, sap flux, electrical resistivity, snowpack survey, and other hillslope eco-hydrology measurements accompany the fully instrumented VPA. Data are sampled and recorded at 5 or 15 minute intervals starting in December 2014. Over the winter both sites exhibit highly variable patterns of relatively dry soils with steady increase in wetness. Abrupt increases in relative wetness occurred with short periods of warming temperatures in Spring. Following a temperature increase in the forested site the relative moisture dramatically increased over a period of several hours at all depths as water level rose 1m within 8 hours. In contrast, following snowmelt relative moisture in the sageland site increased gradually and systematically with depth over a period of two weeks

  14. Passive acoustic telemetry reveals highly variable home range and movement patterns among unicornfish within a marine reserve

    NASA Astrophysics Data System (ADS)

    Marshell, A.; Mills, J. S.; Rhodes, K. L.; McIlwain, J.

    2011-09-01

    Marine reserves are the primary management tool for Guam's reef fish fishery. While a build-up of fish biomass has occurred inside reserve boundaries, it is unknown whether reserve size matches the scale of movement of target species. Using passive acoustic telemetry, we quantified movement patterns and home range size of two heavily exploited unicornfish Naso unicornis and Naso lituratus. Fifteen fish ( N. unicornis: n = 7; N. lituratus: n = 4 male, n = 4 female) were fitted with internal acoustic tags and tracked continuously over four months within a remote acoustic receiver array located in a decade-old marine reserve. This approach provided robust estimates of unicornfish movement patterns and home range size. The mean home range of 3.2 ha for N. unicornis was almost ten times larger than that previously recorded from a three-week tracking study of the species in Hawaii. While N. lituratus were smaller in body size, their mean home range (6.8 ha) was over twice that of N. unicornis. Both species displayed strong site fidelity, particularly during nocturnal and crepuscular periods. Although there was some overlap, individual movement patterns and home range size were highly variable within species and between sexes. N. unicornis home range increased with body size, and only the three largest fish home ranges extended into the deeper outer reef slope beyond the shallow reef flat. Both Naso species favoured habitat dominated by corals. Some individuals made predictable daily crepuscular migrations between different locations or habitat types. There was no evidence of significant spillover from the marine reserve into adjacent fished areas. Strong site fidelity coupled with negligible spillover suggests that small-scale reserves, with natural habitat boundaries to emigration, are effective in protecting localized unicornfish populations.

  15. Spatio-temporal seasonal drought patterns in Europe from 1950 to 2015

    NASA Astrophysics Data System (ADS)

    Spinoni, Jonathan; Naumann, Gustavo; Vogt, Jürgen

    2016-04-01

    Drought is one of the natural disasters with severe impacts in Europe, not only in areas which frequently experience water scarcity such as the Mediterranean, but also in temperate or continental climates such as Central and Eastern Europe and even in cold regions such as Scandinavia and Iceland. In this study the spatio-temporal patterns of seasonal meteorological droughts in Europe between 1950 and 2015 are investigated using the Standardized Precipitation Index (SPI) and the Standardized Precipitation-Evapotranspiration Index (SPEI). Since the focus is on the analysis of seasonal drought trends, indicators were calculated for 3 monthly accumulation periods. The input variables of precipitation and temperature were derived from E-OBS grids (v11-v12) at a spatial resolution of 0.25°x0.25°. Seasonal trends of drought frequency and severity were analyzed for moderate (SPI or SPEI <-1.0) and extreme (SPI or SPEI <-2.0) events during the periods 1950-2015 and 1981-2015. For the moderate events, results of the SPI analysis (precipitation driven) demonstrate a significant tendency towards less frequent and severe droughts in Northern Europe and Russia, especially in winter and spring; oppositely, an increasing trend is visible in Southern Europe, mainly in spring and summer. According to the SPEI analysis (precipitation and temperature driven) Northern Europe shows wetting patterns, while Southern and Eastern Europe show a more remarkable drying tendency, especially in summer and autumn for drought frequency and in every season for drought severity. The evolution towards drier conditions is more relevant from 1981 onwards, both in terms of frequency and severity. This is especially true for Central Europe in spring, for the Mediterranean in summer, and for Eastern Europe in autumn. Extreme events follow similar patterns, but in autumn no spatially coherent trend can be found.

  16. Rationalizing spatial exploration patterns of wild animals and humans through a temporal discounting framework

    PubMed Central

    Namboodiri, Vijay Mohan K.; Levy, Joshua M.; Mihalas, Stefan; Sims, David W.; Hussain Shuler, Marshall G.

    2016-01-01

    Understanding the exploration patterns of foragers in the wild provides fundamental insight into animal behavior. Recent experimental evidence has demonstrated that path lengths (distances between consecutive turns) taken by foragers are well fitted by a power law distribution. Numerous theoretical contributions have posited that “Lévy random walks”—which can produce power law path length distributions—are optimal for memoryless agents searching a sparse reward landscape. It is unclear, however, whether such a strategy is efficient for cognitively complex agents, from wild animals to humans. Here, we developed a model to explain the emergence of apparent power law path length distributions in animals that can learn about their environments. In our model, the agent’s goal during search is to build an internal model of the distribution of rewards in space that takes into account the cost of time to reach distant locations (i.e., temporally discounting rewards). For an agent with such a goal, we find that an optimal model of exploration in fact produces hyperbolic path lengths, which are well approximated by power laws. We then provide support for our model by showing that humans in a laboratory spatial exploration task search space systematically and modify their search patterns under a cost of time. In addition, we find that path length distributions in a large dataset obtained from free-ranging marine vertebrates are well described by our hyperbolic model. Thus, we provide a general theoretical framework for understanding spatial exploration patterns of cognitively complex foragers. PMID:27385831

  17. Understanding flood-induced water chemistry variability extracting temporal patterns with the LDA method

    NASA Astrophysics Data System (ADS)

    Aubert, A. H.; Tavenard, R.; Emonet, R.; De Lavenne, A.; Malinowski, S.; Guyet, T.; Quiniou, R.; Odobez, J.; Merot, P.; Gascuel-odoux, C.

    2013-12-01

    Studying floods has been a major issue in hydrological research for years, both in quantitative and qualitative hydrology. Stream chemistry is a mix of solutes, often used as tracers, as they originate from various sources in the catchment and reach the stream by various flow pathways. Previous studies (for instance (1)) hypothesized that stream chemistry reaction to a rainfall event is not unique but varies seasonally, and according to the yearly meteorological conditions. Identifying a typology of flood temporal chemical patterns is a way to better understand catchment processes at the flood and seasonal time scale. We applied a probabilistic model (Latent Dirichlet Allocation or LDA (2)) mining recurrent sequential patterns from a dataset of floods. A set of 472 floods was automatically extracted from a daily 12-year long record of nitrate, dissolved organic carbon, sulfate and chloride concentrations. Rainfall, discharge, water table depth and temperature are also considered. Data comes from a long-term hydrological observatory (AgrHys, western France) located at Kervidy-Naizin. From each flood, a document has been generated that is made of a set of "hydrological words". Each hydrological word corresponds to a measurement: it is a triplet made of the considered variable, the time at which the measurement is made (relative to the beginning of the flood), and its magnitude (that can be low, medium or high). The documents and the number of pattern to be mined are used as input data to the LDA algorithm. LDA relies on spotting co-occurrences (as an alternative to the more traditional study of correlation) between words that appear within the flood documents. It has two nice properties that are its ability to easily deal with missing data and its additive property that allows a document to be seen as a mixture of several flood patterns. The output of LDA is a set of patterns easily represented in graphics. These patterns correspond to typical reactions to rainfall

  18. Spatial and temporal statistical analysis of bycatch data: Patterns of sea turtle bycatch in the North Atlantic

    USGS Publications Warehouse

    Gardner, B.; Sullivan, P.J.; Morreale, S.J.; Epperly, S.P.

    2008-01-01

    Loggerhead (Caretta caretta) and leatherback (Dermochelys coriacea) sea turtle distributions and movements in offshore waters of the western North Atlantic are not well understood despite continued efforts to monitor, survey, and observe them. Loggerhead and leatherback sea turtles are listed as endangered by the World Conservation Union, and thus anthropogenic mortality of these species, including fishing, is of elevated interest. This study quantifies spatial and temporal patterns of sea turtle bycatch distributions to identify potential processes influencing their locations. A Ripley's K function analysis was employed on the NOAA Fisheries Atlantic Pelagic Longline Observer Program data to determine spatial, temporal, and spatio-temporal patterns of sea turtle bycatch distributions within the pattern of the pelagic fishery distribution. Results indicate that loggerhead and leatherback sea turtle catch distributions change seasonally, with patterns of spatial clustering appearing from July through October. The results from the space-time analysis indicate that sea turtle catch distributions are related on a relatively fine scale (30-200 km and 1-5 days). The use of spatial and temporal point pattern analysis, particularly K function analysis, is a novel way to examine bycatch data and can be used to inform fishing practices such that fishing could still occur while minimizing sea turtle bycatch. ?? 2008 NRC.

  19. Patterns of Occurrence and Marine Mammal Acoustic Behavior in Relation to Navy Sonar Activity Off Jacksonville, Florida.

    PubMed

    Oswald, Julie N; Norris, Thomas F; Yack, Tina M; Ferguson, Elizabeth L; Kumar, Anurag; Nissen, Jene; Bell, Joel

    2016-01-01

    Passive acoustic data collected from marine autonomous recording units deployed off Jacksonville, FL (from 13 September to 8 October 2009 and 3 December 2009 to 8 January 2010), were analyzed for detection of cetaceans and Navy sonar. Cetaceans detected included Balaenoptera acutorostrata, Eubalaena glacialis, B. borealis, Physeter macrocephalus, blackfish, and delphinids. E. glacialis were detected at shallow and, somewhat unexpectedly, deep sites. P. macrocephalus were characterized by a strong diel pattern. B. acutorostrata showed the strongest relationship between sonar activity and vocal behavior. These results provide a preliminary assessment of cetacean occurrence off Jacksonville and new insights on vocal responses to sonar. PMID:26611034

  20. Multivariate data-driven modelling and pattern recognition for damage detection and identification for acoustic emission and acousto-ultrasonics

    NASA Astrophysics Data System (ADS)

    Torres-Arredondo, M.-A.; Tibaduiza, D.-A.; McGugan, M.; Toftegaard, H.; Borum, K.-K.; Mujica, L. E.; Rodellar, J.; Fritzen, C.-P.

    2013-10-01

    Different methods are commonly used for non-destructive testing in structures; among others, acoustic emission and ultrasonic inspections are widely used to assess structures. The research presented in this paper is motivated by the need to improve the inspection capabilities and reliability of structural health monitoring (SHM) systems based on ultrasonic guided waves with focus on the acoustic emission and acousto-ultrasonics techniques. The use of a guided wave based approach is driven by the fact that these waves are able to propagate over relatively long distances, and interact sensitively and uniquely with different types of defect. Special attention is paid here to the development of efficient SHM methodologies. This requires robust signal processing techniques for the correct interpretation of the complex ultrasonic waves. Therefore, a variety of existing algorithms for signal processing and pattern recognition are evaluated and integrated into the different proposed methodologies. As a contribution to solve the problem, this paper presents results in damage detection and classification using a methodology based on hierarchical nonlinear principal component analysis, square prediction measurements and self-organizing maps, which are applied to data from acoustic emission tests and acousto-ultrasonic inspections. At the end, the efficiency of these methodologies is experimentally evaluated in diverse anisotropic composite structures.

  1. Acoustic Modal Patterns and Striations (AMPS) experiment G-325, Norfolk Public Schools

    NASA Technical Reports Server (NTRS)

    Young, Joy W.

    1995-01-01

    This paper will describe how high school students with the guidance of volunteer mentors were able to successfully complete an acoustics space experiment. Some of the NORSTAR program strategies used to effectively accomplish this goal will be discussed. The experiment and present status of results will be explained.

  2. Automated pattern analysis: A newsilent partner in insect acoustic detection studies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This seminar reviews methods that have been developed for automated analysis of field-collected sounds used to estimate pest populations and guide insect pest management decisions. Several examples are presented of successful usage of acoustic technology to map insect distributions in field environ...

  3. Mining Spatial-Temporal Patterns and Structural Sparsity for Human Motion Data Denoising.

    PubMed

    Feng, Yinfu; Ji, Mingming; Xiao, Jun; Yang, Xiaosong; Zhang, Jian J; Zhuang, Yueting; Li, Xuelong

    2015-12-01

    Motion capture is an important technique with a wide range of applications in areas such as computer vision, computer animation, film production, and medical rehabilitation. Even with the professional motion capture systems, the acquired raw data mostly contain inevitable noises and outliers. To denoise the data, numerous methods have been developed, while this problem still remains a challenge due to the high complexity of human motion and the diversity of real-life situations. In this paper, we propose a data-driven-based robust human motion denoising approach by mining the spatial-temporal patterns and the structural sparsity embedded in motion data. We first replace the regularly used entire pose model with a much fine-grained partlet model as feature representation to exploit the abundant local body part posture and movement similarities. Then, a robust dictionary learning algorithm is proposed to learn multiple compact and representative motion dictionaries from the training data in parallel. Finally, we reformulate the human motion denoising problem as a robust structured sparse coding problem in which both the noise distribution information and the temporal smoothness property of human motion have been jointly taken into account. Compared with several state-of-the-art motion denoising methods on both the synthetic and real noisy motion data, our method consistently yields better performance than its counterparts. The outputs of our approach are much more stable than that of the others. In addition, it is much easier to setup the training dataset of our method than that of the other data-driven-based methods. PMID:25561602

  4. Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean.

    PubMed

    Church, Matthew J; Short, Cindy M; Jenkins, Bethany D; Karl, David M; Zehr, Jonathan P

    2005-09-01

    Dinitrogen (N(2))-fixing microorganisms (diazotrophs) play important roles in ocean biogeochemistry and plankton productivity. In this study, we examined the presence and expression of specific planktonic nitrogenase genes (nifH) in the upper ocean (0 to 175 m) at Station ALOHA in the oligotrophic North Pacific Ocean. Clone libraries constructed from reverse-transcribed PCR-amplified mRNA revealed six unique phylotypes. Five of the nifH phylotypes grouped with sequences from unicellular and filamentous cyanobacteria, and one of the phylotypes clustered with gamma-proteobacteria. The cyanobacterial nifH phylotypes retrieved included two sequence types that phylogenetically grouped with unicellular cyanobacteria (termed groups A and B), several sequences closely related (97 to 99%) to Trichodesmium spp. and Katagnymene spiralis, and two previously unreported phylotypes clustering with heterocyst-forming nifH cyanobacteria. Temporal patterns of nifH expression were evaluated using reverse-transcribed quantitative PCR amplification of nifH gene transcripts. The filamentous and presumed unicellular group A cyanobacterial phylotypes exhibited elevated nifH transcription during the day, while members of the group B (closely related to Crocosphaera watsonii) unicellular phylotype displayed greater nifH transcription at night. In situ nifH expression by all of the cyanobacterial phylotypes exhibited pronounced diel periodicity. The gamma-proteobacterial phylotype had low transcript abundance and did not exhibit a clear diurnal periodicity in nifH expression. The temporal separation of nifH expression by the various phylotypes suggests that open ocean diazotrophic cyanobacteria have unique in situ physiological responses to daily fluctuations of light in the upper ocean. PMID:16151126

  5. Temporal and Spatial Patterns of Ambient Endotoxin Concentrations in Fresno, California

    PubMed Central

    Tager, Ira B.; Lurmann, Frederick W.; Haight, Thaddeus; Alcorn, Siana; Penfold, Bryan; Hammond, S. Katharine

    2010-01-01

    Background Endotoxins are found in indoor dust generated by human activity and pets, in soil, and adsorbed onto the surfaces of ambient combustion particles. Endotoxin concentrations have been associated with respiratory symptoms and the risk of atopy and asthma in children. Objective We characterized the temporal and spatial variability of ambient endotoxin in Fresno/Clovis, California, located in California’s Central Valley, to identify correlates and potential predictors of ambient endotoxin concentrations in a cohort of children with asthma [Fresno Asthmatic Children’s Environment Study (FACES)]. Methods Between May 2001 and October 2004, daily ambient endotoxin and air pollutants were collected at the central ambient monitoring site of the California Air Resources Board in Fresno and, for shorter time periods, at 10 schools and indoors and outdoors at 84 residences in the community. Analyses were restricted to May–October, the dry months during which endotoxin concentrations are highest. Results Daily endotoxin concentration patterns were determined mainly by meteorologic factors, particularly the degree of air stagnation. Overall concentrations were lowest in areas distant from agricultural activities. Highest concentrations were found in areas immediately downwind from agricultural/pasture land. Among three other measured air pollutants [fine particulate matter, elemental carbon (a marker of traffic in Fresno), and coarse particulate matter (PMc)], PMc was the only pollutant correlated with endotoxin. Endotoxin, however, was the most spatially variable. Conclusions Our data support the need to evaluate the spatial/temporal variability of endotoxin concentrations, rather than relying on a few measurements made at one location, in studies of exposure and and respiratory health effects, particularly in children with asthma and other chronic respiratory diseases. PMID:20494854

  6. Interpreting the spatio-temporal patterns of sea turtle strandings: Going with the flow

    USGS Publications Warehouse

    Hart, K.M.; Mooreside, P.; Crowder, L.B.

    2006-01-01

    Knowledge of the spatial and temporal distribution of specific mortality sources is crucial for management of species that are vulnerable to human interactions. Beachcast carcasses represent an unknown fraction of at-sea mortalities. While a variety of physical (e.g., water temperature) and biological (e.g., decomposition) factors as well as the distribution of animals and their mortality sources likely affect the probability of carcass stranding, physical oceanography plays a major role in where and when carcasses strand. Here, we evaluate the influence of nearshore physical oceanographic and wind regimes on sea turtle strandings to decipher seasonal trends and make qualitative predictions about stranding patterns along oceanfront beaches. We use results from oceanic drift-bottle experiments to check our predictions and provide an upper limit on stranding proportions. We compare predicted current regimes from a 3D physical oceanographic model to spatial and temporal locations of both sea turtle carcass strandings and drift bottle landfalls. Drift bottle return rates suggest an upper limit for the proportion of sea turtle carcasses that strand (about 20%). In the South Atlantic Bight, seasonal development of along-shelf flow coincides with increased numbers of strandings of both turtles and drift bottles in late spring and early summer. The model also predicts net offshore flow of surface waters during winter - the season with the fewest relative strandings. The drift bottle data provide a reasonable upper bound on how likely carcasses are to reach land from points offshore and bound the general timeframe for stranding post-mortem (< two weeks). Our findings suggest that marine turtle strandings follow a seasonal regime predictable from physical oceanography and mimicked by drift bottle experiments. Managers can use these findings to reevaluate incidental strandings limits and fishery takes for both nearshore and offshore mortality sources. ?? 2005 Elsevier Ltd

  7. Spatial and temporal patterns of error in land cover change analyses: Identifying and propagating uncertainty for ecological monitoring and modeling

    NASA Astrophysics Data System (ADS)

    Burnicki, Amy Colette

    Improving our understanding of the uncertainty associated with a map of land-cover change is needed given the importance placed on modeling our changing landscape. My dissertation research addressed the challenges of estimating the accuracy of a map of change by improving our understanding of the spatio-temporal structure of error in multi-date classified imagery, investigating the relative strength and importance of a temporal dependence between classification errors in multi-date imagery, and exploring the interaction of classification errors within a simulated model of land-cover change. First, I quantified the spatial and temporal patterns of error in multi-date classified imagery acquired for Pittsfield Township, Michigan. Specifically, I examined the propagation of error in a post-classification change analysis. The spatial patterns of misclassification for each classified map, the temporal correlation between the errors in each classified map, and secondary variables that may have affected the pattern of error associated with the map of change were analyzed by addressing a series of research hypothesis. The results of all analyses provided a thorough description and understanding of the spatio-temporal error structure for this test township. Second, I developed a model of error propagation in land-cover change that simulated user-defined spatial and temporal patterns of error within a time-series of classified maps to assess the impact of the specified error patterns on the accuracy of the resulting map of change. Two models were developed. The first established the overall modeling framework using land-cover maps composed of two land-cover classes. The second extended the initial model by using three land-cover class maps to investigate model performance under increased landscape complexity. The results of the simulated model demonstrated that the presence of temporal interaction between the errors of individual classified maps affected the resulting

  8. Spatio-Temporal Migration Patterns of Pacific Salmon Smolts in Rivers and Coastal Marine Waters

    PubMed Central

    Melnychuk, Michael C.; Welch, David W.; Walters, Carl J.

    2010-01-01

    Background Migrations allow animals to find food resources, rearing habitats, or mates, but often impose considerable predation risk. Several behavioural strategies may reduce this risk, including faster travel speed and taking routes with shorter total distance. Descriptions of the natural range of variation in migration strategies among individuals and populations is necessary before the ecological consequences of such variation can be established. Methodology/Principal Findings Movements of tagged juvenile coho, steelhead, sockeye, and Chinook salmon were quantified using a large-scale acoustic tracking array in southern British Columbia, Canada. Smolts from 13 watersheds (49 watershed/species/year combinations) were tagged between 2004–2008 and combined into a mixed-effects model analysis of travel speed. During the downstream migration, steelhead were slower on average than other species, possibly related to freshwater residualization. During the migration through the Strait of Georgia, coho were slower than steelhead and sockeye, likely related to some degree of inshore summer residency. Hatchery-reared smolts were slower than wild smolts during the downstream migration, but after ocean entry, average speeds were similar. In small rivers, downstream travel speed increased with body length, but in the larger Fraser River and during the coastal migration, average speed was independent of body length. Smolts leaving rivers located towards the northern end of the Strait of Georgia ecosystem migrated strictly northwards after ocean entry, but those from rivers towards the southern end displayed split-route migration patterns within populations, with some moving southward. Conclusions/Significance Our results reveal a tremendous diversity of behavioural migration strategies used by juvenile salmon, across species, rearing histories, and habitats, as well as within individual populations. During the downstream migration, factors that had strong effects on travel

  9. Vertical distribution, composition and migratory patterns of acoustic scattering layers in the Canary Islands

    NASA Astrophysics Data System (ADS)

    Ariza, A.; Landeira, J. M.; Escánez, A.; Wienerroither, R.; Aguilar de Soto, N.; Røstad, A.; Kaartvedt, S.; Hernández-León, S.

    2016-05-01

    Diel vertical migration (DVM) facilitates biogeochemical exchanges between shallow waters and the deep ocean. An effective way of monitoring the migrant biota is by acoustic observations although the interpretation of the scattering layers poses challenges. Here we combine results from acoustic observations at 18 and 38 kHz with limited net sampling in order to unveil the origin of acoustic phenomena around the Canary Islands, subtropical northeast Atlantic Ocean. Trawling data revealed a high diversity of fishes, decapods and cephalopods (152 species), although few dominant species likely were responsible for most of the sound scattering in the region. We identified four different acoustic scattering layers in the mesopelagic realm: (1) at 400-500 m depth, a swimbladder resonance phenomenon at 18 kHz produced by gas-bearing migrant fish such as Vinciguerria spp. and Lobianchia dofleini, (2) at 500-600 m depth, a dense 38 kHz layer resulting primarily from the gas-bearing and non-migrant fish Cyclothone braueri, and to a lesser extent, from fluid-like migrant fauna also inhabiting these depths, (3) between 600 and 800 m depth, a weak signal at both 18 and 38 kHz ascribed either to migrant fish or decapods, and (4) below 800 m depth, a weak non-migrant layer at 18 kHz which was not sampled. All the dielly migrating layers reached the epipelagic zone at night, with the shorter-range migrations moving at 4.6 ± 2.6 cm s - 1 and the long-range ones at 11.5 ± 3.8 cm s - 1. This work reduces uncertainties interpreting standard frequencies in mesopelagic studies, while enhances the potential of acoustics for future research and monitoring of the deep pelagic fauna in the Canary Islands.

  10. Spatial and temporal seismicity patterns from dynamic trigger by great earthquakes

    NASA Astrophysics Data System (ADS)

    Johnson, C. W.; Burgmann, R.

    2013-12-01

    with respect to background earthquake activity following large magnitude events using 30 years of earthquake catalog data obtained from the Advanced National Seismic System. Our goal is to determine if a dynamic shadow effect results in a reduction of seismicity at a distinguishable level below the background seismicity over various temporal and spatial ranges following the largest cataloged earthquakes. We utilize spatial ranges consistent with maximum transient stress changes for different fault mechanisms in order to document the temporal characteristics of seismicity patterns.

  11. Stomach temperature telemetry reveals temporal patterns of foraging success in a free-ranging marine mammal.

    PubMed

    Austin, Deborah; Bowen, W D; McMillan, J I; Boness, D J

    2006-03-01

    1. We studied feeding frequency in free-ranging grey seals using stomach temperature telemetry to test if previously reported sex differences in the diving, movement and diet were reflected in the temporal pattern of foraging success. 2. Data were retrieved from 21 of 32 grey seals from 1999 to 2001, totalling 343 days and 555 feeding events, with individual record length varying from 2 to 40 days (mean: 16.33 +/- 2.67 days/seal). 3. Seals fed on 57.8 +/- 6.46% of days sampled and had an average of 1.7 +/- 0.26 meals per day, but individual variability was apparent in the temporal distribution of feeding as evidenced by high coefficients of variation (coefficient of variation = 69.0%). 4. Bout analysis of non-feeding intervals of six grey seals suggests that feeding intervals of individuals were varied and probably reflect differences in prey availability. Grey seals tended to have many single feeding events with long periods separating each event, as would be expected for a large carnivore with a batch-reactor digestive system. 5. We found significant sex differences in the temporal distribution of feeding. The number of feeding events per day was greater in males (2.2 +/- 0.4 vs. 1.0 +/- 0.2), as was time associated with feeding per day (56.6 +/- 5.8 min vs. 43.9 +/- 9.4 min). 6. The number of feeding events varied with time of day with the least number occurring during dawn. Feeding event size differed significantly by time of day, with greater meal sizes during the dawn and the smallest meals during the night. 7. The length of time between meals increased with the size of the previous meal, and was significantly less in males (541.4 +/- 63.5 min) than in females (1092.6 +/- 169.9 min). 8. These results provide new insight into the basis of sex differences in diving and diet in this large size-dimorphic marine predator. PMID:16637994

  12. The influence of temporal pattern of stimulation on delay tuning of neurons in the auditory cortex of the FM bat, Myotis lucifugus.

    PubMed

    Tanaka, H; Wong, D

    1993-03-01

    In echolocating bats, delay-sensitive neurons show facilitative responses to simulated pulse-echo pairs at particular echo delays. Three experiments examined how the temporal pattern of stimulation affected the delay tuning of neurons in the auditory cortex of the awake FM bat, Myotis lucifugus. First, delay tuning was compared using a series of pulse-echo pairs fixed in echo delay ('standard' stimuli), and a series of pulse-echo pairs in which successive sound pairs decreased by a fixed echo-delay step ('approach' stimuli). Similar best delays were measured with both stimulation patterns presented at repetition rates in which the neuron was delay-sensitive. At the higher delay-sensitive pulse repetition rates, approach stimuli evoked larger delay-dependent responses. Second, approach stimuli were fixed at different intertrial intervals. The best delay was unaffected by intertrial interval, although some neurons showed larger responses for longer intertrial intervals (0.5, 1.0 s), especially at the higher delay-sensitive pulse repetition rates. Third, approach stimuli were fixed at different echo-delay steps to simulate target velocity. The majority of neurons showed some sensitivity to echo-delay step, with clear preference for target velocity mainly between 1.8-7.0 m/s. This suggests that delay-sensitive neurons compute target velocity by rate of change of echo delay over successive echoes. Thus, response properties of cortical neurons are influenced by dynamic acoustic conditions found in target-directed flight. PMID:8473246

  13. Improvement of temporal resolution in blood concentration imaging using NIR speckle patterns

    NASA Astrophysics Data System (ADS)

    Yokoi, Naomichi; Shimatani, Yuichi; Kyoso, Masaki; Funamizu, Hideki; Aizu, Yoshihisa

    2013-06-01

    In the imaging of blood concentration change using near infrared bio-speckles, temporal averaging of speckle images is necessary for speckle reduction. To improve the temporal resolution in blood concentration imaging, use of spatial averaging is investigated to measured data in rat experiments. Results show that three frames in temporal averaging with (2×2) pixels in spatial averaging can be accepted to obtain the temporal resolution of ten concentration images per second.

  14. Very high resolution airborne imagery for characterising spatial and temporal thermal patterns of braided rivers

    NASA Astrophysics Data System (ADS)

    Wawrzyniak, V.; Piégay, H.; Allemand, P.; Grandjean, P.

    2011-12-01

    At the catchment scale water temperature is influenced by geographical factors, but at the reach scale superficial and groundwater hydrology and channel geometry strongly affect thermal patterns. During the last 30 years, studies have been pointed out the significance and complexity of water exchanges between the channel and the hyporheic and phreatic zones. These surface-subsurface water exchanges influence water temperature patterns. Braided rivers present particular thermal conditions with very high spatial water temperature variability. This high thermal variability is difficult to comprehend using only in situ measurements and so thermal infrared (TIR) remote sensing is particularly suited to assessing the thermal patterns associated with these rivers. The aims of this study are to evaluate temperature patterns of nine braided reaches at very high spatial resolution (~20 cm) and to link temperature and water-body types. We hypothesized that river type has an influence of the spatial patterns of water temperature and that the patterns change through the day. All reaches are located in France, in the Rhône catchment. The nine reaches were selected based on high aquatic habitat diversities and are located in three regional areas: the massif des Écrins, the Rhône valley, and south Alps. They are about 1 km long. We have three distinct temporal approaches. The first one is a multi-site approach which proposes one survey of each site during summers 2010 or 2011. Three reaches were selected for the second phase (a multi-annual analysis and were therefore imaged both in summers 2010 and 2011. The last phase is an intra-day survey of two reaches with several flights at different times of day. This presentation focuses on the last approach with two reaches of the Drôme and Drac Noir rivers. To observe the evolution of the thermal patterns of these two reaches through the day, four flights within a day were realized during summer 2011 for both sites. The Drôme reach

  15. Laser-speckle-visibility acoustic spectroscopy in soft turbid media

    NASA Astrophysics Data System (ADS)

    Wintzenrieth, Frédéric; Cohen-Addad, Sylvie; Le Merrer, Marie; Höhler, Reinhard

    2014-01-01

    We image the evolution in space and time of an acoustic wave propagating along the surface of turbid soft matter by shining coherent light on the sample. The wave locally modulates the speckle interference pattern of the backscattered light, which is recorded using a camera. We show both experimentally and theoretically how the temporal and spatial correlations in this pattern can be analyzed to obtain the acoustic wavelength and attenuation length. The technique is validated using shear waves propagating in aqueous foam. It may be applied to other kinds of acoustic waves in different forms of turbid soft matter such as biological tissues, pastes, or concentrated emulsions.

  16. Learning and Discrimination of Audiovisual Events in Human Infants: The Hierarchical Relation between Intersensory Temporal Synchrony and Rhythmic Pattern Cues.

    ERIC Educational Resources Information Center

    Lewkowicz, David J.

    2003-01-01

    Three experiments examined 4- to 10-month-olds' perception of audio-visual (A-V) temporal synchrony cues in the presence or absence of rhythmic pattern cues. Results established that infants of all ages could discriminate between two different audio-visual rhythmic events. Only 10-month-olds detected a desynchronization of the auditory and visual…

  17. Water quality in the Fort Cobb Watershed, USA: Spatial and temporal patterns of dissolved P stream concentrations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dissolved phosphorus (P) has often been identified as the nutrient of concern in lakes, reservoirs and streams especially where there is evidence of eutrophication. The objective of this work is to identify spatial and temporal patterns in dissolved P [soluble reactive P (SRP) and bioavailable P (B...

  18. Factors influencing the temporal and spatial patterns of dogwood borer (Lepidoptera: Sesiidae) infestations in newly planted apple orchards

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The temporal and spatial patterns of infestation by larval dogwood borer, Synanthedon scitula (Harris), was studied during 2002–2004 in two newly planted apple orchards in West Virginia and Virginia. The orchards contained several rootstock-variety combinations grown under different cultural manage...

  19. Effects of Temporal Sequencing and Auditory Discrimination on Children's Memory Patterns for Tones, Numbers, and Nonsense Words

    ERIC Educational Resources Information Center

    Gromko, Joyce Eastlund; Hansen, Dee; Tortora, Anne Halloran; Higgins, Daniel; Boccia, Eric

    2009-01-01

    The purpose of this study was to determine whether children's recall of tones, numbers, and words was supported by a common temporal sequencing mechanism; whether children's patterns of memory for tones, numbers, and nonsense words were the same despite differences in symbol systems; and whether children's recall of tones, numbers, and nonsense…

  20. Temporal pattern and effect of sex on lipopolysaccharide-induced stress hormone and cytokine response in pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The temporal pattern and gender effect on immune and stress hormone responses to a lipopolysaccharide (LPS) challenge was assessed using a pig model. Secretion of the proinflammatory cytokines tumor necrosis factor (TNF)-alpha, interleukin-1 (IL-1) beta and IL-6 increased (P < 0.05) in a time-depend...

  1. Identifying spatio-temporal patterns of transboundary disease spread: examples using avian influenza H5N1 outbreaks

    PubMed Central

    Farnsworth, Matthew L.; Ward, Michael P.

    2009-01-01

    Characterizing spatio-temporal patterns among epidemics in which the mechanism of spread is uncertain is important for generating disease spread hypotheses, which may in turn inform disease control and prevention strategies. Using a dataset representing three phases of highly pathogenic avian influenza H5N1 outbreaks in village poultry in Romania, 2005–2006, spatio-temporal patterns were characterized. We first fit a set of hierarchical Bayesian models that quantified changes in the spatio-temporal relative risk for each of the 23 affected counties. We then modeled spatial synchrony in each of the three epidemic phases using non-parametric covariance functions and Thin Plate Spline regression models. We found clear differences in the spatio-temporal patterns among the epidemic phases (local versus regional correlated processes), which may indicate differing spread mechanisms (for example wild bird versus human-mediated). Elucidating these patterns allowed us to postulate that a shift in the primary mechanism of disease spread may have taken place between the second and third phases of this epidemic. Information generated by such analyses could assist affected countries in determining the most appropriate control programs to implement, and to allocate appropriate resources to preventing contact between domestic poultry and wild birds versus enforcing bans on poultry movements and quarantine. The methods used in this study could be applied in many different situations to analyze transboundary disease data in which only location and time of occurrence data are reported. PMID:19210952

  2. DATA-DRIVEN DISCOVERY OF TEMPORAL AND GEOSPATIAL PATTERNS OF DISEASE TRANSMISSION: WEST NILE VIRUS IN MARYLAND

    EPA Science Inventory

    The necessity of rapid response to a developing disease outbreak often precludes systematic investigation of the mechanisms and patterns (temporal and geospatial) of spread. In order to deploy the most rapid response possible, we must exploit existing data to its maximum extent....

  3. Temporal pattern and effect of sex on lipopolysaccharide-induced stress hormone and cytokine response in pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The temporal pattern and gender effect of immune and stress hormone responses to a lipopolysaccharide (LPS) challenge were assessed using a pig model. Secretion of the pro-inflammatory cytokines tumor necrosis factor (TNF)-alpha, interleukin (IL)-1beta and IL-6 increased in a time-dependent manner f...

  4. Spatial, temporal, and interspecies patterns in fine particulate matter in Texas.

    PubMed

    Gebhart, Kristi A; Malm, William C; Ashbaugh, Lowell L

    2005-11-01

    The Big Bend Regional Aerosol and Visibility Observational (BRAVO) field study was conducted from July to October 1999 and was followed by several years of modeling and data analyses to examine the causes of haze at Big Bend National Park TX (BBNP). During BRAVO, daily speciated fine (diameter <2.5 microm) particulate concentrations were measured at 37 sites throughout Texas. At the primary receptor site, K-Bar Ranch, there were many additional measurements including a "high-sensitivity" version of the 24-hr fine particulate elemental data. The spatial, temporal, and interspecies patterns in these data are examined here to qualitatively investigate source regions and source types influencing the fine particulate concentrations in Texas with an emphasis on sources of sulfates, the largest contributor to fine mass and light extinction. Peak values of particulate sulfur (S) varied spatially and seasonally. Maximum S was in Northeast Texas during the summer, whereas peak S at BBNP was in the fall. Sulfate acidity at BBNP also varied by month. Sources of Se were evident in Northeast Texas and from the Carbón I and II plants. High S episodes at BBNP during BRAVO had several different trace element characteristics. Carbon concentrations at BBNP during BRAVO were probably mostly urban-related, with arrival from the Houston area likely. The Houston artificial tracer released during the second half of BRAVO was highly correlated with some carbon fractions. There was evidence of the influence of African dust at sites throughout Texas during the summer. Patterns in several trace elements were also examined. Vanadium was associated with air masses from Mexico. Lead concentrations in southern Texas have dropped dramatically over the past several years. PMID:16350362

  5. Automated swimming activity monitor for examining temporal patterns of toxicant effects on individual Daphnia magna.

    PubMed

    Bahrndorff, Simon; Michaelsen, Thomas Yssing; Jensen, Anne; Marcussen, Laurits Faarup; Nielsen, Majken Elley; Roslev, Peter

    2016-07-01

    Aquatic pollutants are often biologically active at low concentrations and impact on biota in combination with other abiotic stressors. Traditional toxicity tests may not detect these effects, and there is a need for sensitive high-throughput methods for detecting sublethal effects. We have evaluated an automated infra-red (IR) light-based monitor for recording the swimming activity of Daphnia magna to establish temporal patterns of toxicant effects on an individual level. Activity was recorded for 48 h and the sensitivity of the monitor was evaluated by exposing D. magna to the reference chemicals K2 Cr2 O7 at 15, 20 and 25 °C and 2,4-dichlorophenol at 20 °C. Significant effects (P < 0.001) of toxicant concentrations, exposure time and incubation temperatures were observed. At 15 °C, the swimming activity remained unchanged for 48 h at sublethal concentrations of K2 Cr2 O7 whereas activity at 20 and 25 °C was more biphasic with decreases in activity occurring after 12-18 h. A similar biphasic pattern was observed after 2,4-dichlorophenol exposure at 20 °C. EC50 values for 2,4-dichlorophenol and K2 Cr2 O7 determined from automated recording of swimming activity showed increasing toxicity with time corresponding to decreases in EC50 of 0.03-0.07 mg l(-1) h(-1) . EC50 values determined after 48 h were comparable or lower than EC50 values based on visual inspection according to ISO 6341. The results demonstrated that the swimming activity monitor is capable of detecting sublethal behavioural effects that are toxicant and temperature dependent. The method allows EC values to be established at different time points and can serve as a high-throughput screening tool in toxicity testing. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26198804

  6. Multivariate pattern analysis reveals anatomical connectivity differences between the left and right mesial temporal lobe epilepsy

    PubMed Central

    Fang, Peng; An, Jie; Zeng, Ling-Li; Shen, Hui; Chen, Fanglin; Wang, Wensheng; Qiu, Shijun; Hu, Dewen

    2015-01-01

    Previous studies have demonstrated differences of clinical signs and functional brain network organizations between the left and right mesial temporal lobe epilepsy (mTLE), but the anatomical connectivity differences underlying functional variance between the left and right mTLE remain uncharacterized. We examined 43 (22 left, 21 right) mTLE patients with hippocampal sclerosis and 39 healthy controls using diffusion tensor imaging. After the whole-brain anatomical networks were constructed for each subject, multivariate pattern analysis was applied to classify the left mTLE from the right mTLE and extract the anatomical connectivity differences between the left and right mTLE patients. The classification results reveal 93.0% accuracy for the left mTLE versus the right mTLE, 93.4% accuracy for the left mTLE versus controls and 90.0% accuracy for the right mTLE versus controls. Compared with the right mTLE, the left mTLE exhibited a different connectivity pattern in the cortical-limbic network and cerebellum. The majority of the most discriminating anatomical connections were located within or across the cortical-limbic network and cerebellum, thereby indicating that these disease-related anatomical network alterations may give rise to a portion of the complex of emotional and memory deficit between the left and right mTLE. Moreover, the orbitofrontal gyrus, cingulate cortex, hippocampus and parahippocampal gyrus, which exhibit high discriminative power in classification, may play critical roles in the pathophysiology of mTLE. The current study demonstrated that anatomical connectivity differences between the left mTLE and the right mTLE may have the potential to serve as a neuroimaging biomarker to guide personalized diagnosis of the left and right mTLE. PMID:25844312

  7. Spatial and temporal patterns of micropollutants in streams and effluent of 24 WWTPs across Switzerland

    NASA Astrophysics Data System (ADS)

    Schönenberger, Urs; Spycher, Barbara; Kistler, David; Burdon, Frank; Reyes, Marta; Eggen, Rik; Joss, Adriano; Singer, Heinz; Stamm, Christian

    2016-04-01

    Treated municipal wastewater is an important source of micropollutants entering the environment. Micropollutants are a diverse range of chemicals of which concentrations vary strongly in space and time. To better quantitatively understand the spatio-temporal patterns of micropollutants in streams, we compared upstream and downstream locations at 24 wastewater treatment plants (WWTPs) across the Swiss Plateau and Jura regions. Each site represents the most upstream treatment plant in the corresponding catchment. In 2013, a broad analytical screening was applied to samples collected at 12 sites during winter (January) and summer conditions (June). Based in these results, the bi-monthly samples obtained in 2014 at 12 additional sites were analysed for a group of approximately 60 selected organic micropollutants. The screening results demonstrate that generally, pharmaceuticals, artificial sweeteners and corrosion inhibitors make up the largest share of the organic micropollutants in wastewater. Pesticides including biocides and plant protection products are also regularly found, but at lower concentrations. The opposite holds true for the concentration variability: pesticides vary the most across time and space, while pharmaceuticals exhibit more stable concentrations. Heavy metals fluctuate to a similar degree as pharmaceuticals. Principal component analyses suggest that pesticide and pharmaceutical levels at both upstream locations and in the wastewater vary independently of each other. At the upstream locations, the pesticide levels increased with the proportion of arable land in the watershed, whilst decreasing with greater cover of pasture and forest. Interestingly, the same patterns hold true for the composition of wastewater when considering land use in the catchments of the WWTPs. This suggests that pesticide-intensive agricultural crops not only impact surface water quality via diffuse pollution but also increase levels of pesticides in wastewater discharged

  8. Spatial, temporal, and interspecies patterns in fine particulate matter in Texas

    SciTech Connect

    Kristi A. Gebhart; William C. Malm; Lowell L. Ashbaugh

    2005-11-01

    The Big Bend Regional Aerosol and Visibility Observational (BRAVO) field study was conducted from July to October 1999 and was followed by several years of modeling and data analyses to examine the causes of haze at Big Bend National Park TX (BBNP). During BRAVO, daily speciated fine (diameter <2.5 {mu}m) particulate concentrations were measured at 37 sites throughout Texas. At the primary receptor site, K-Bar Ranch, there were many additional measurements including a 'high-sensitivity' version of the 24-hr fine particulate elemental data. The spatial, temporal, and interspecies patterns in these data are examined here to qualitatively investigate source regions and source types influencing the fine particulate concentrations in Texas with an emphasis on sources of sulfates, the largest contributor to fine mass and light extinction. Peak values of particulate sulfur (S) varied spatially and seasonally. Maximum S was in Northeast Texas during the summer, whereas peak S at BBNP was in the fall. Sulfate acidity at BBNP also varied by month. Sources of Se were evident in Northeast Texas and from the Carbon I and II coal-fired plants. High S episodes at BBNP during BRAVO had several different trace element characteristics. Carbon concentrations at BBNP during BRAVO were probably mostly urban-related, with arrival from the Houston area likely. The Houston artificial tracer released during the second half of BRAVO was highly correlated with some carbon fractions. There was evidence of the influence of African dust at sites throughout Texas during the summer. Patterns in several trace elements were also examined. Vanadium was associated with air masses from Mexico. Lead concentrations in southern Texas have dropped dramatically over the past several years. 23 refs., 9 figs., 2 tabs.

  9. Spatial and Temporal Patterns of SMAP Brightness Temperatures for Use in Level 1 TB Characterization

    NASA Astrophysics Data System (ADS)

    Kim, E. J.

    2015-12-01

    1. IntroductionThe recent launch of NASA's Soil Moisture Active Passive (SMAP) mission [Entekhabi, et al] has opened the door to improved brightness temperature (TB) calibration of satellite L-band microwave radiometers, through the use of SMAP's lower noise performance and better immunity to man-made interference (vs. ESA's Soil Moisture Ocean Salinity (SMOS) mission [Kerr, et al]), better spatial resolution (vs. NASA's Aquarius sea surface salinity mission [Le Vine, et al]), and cleaner antenna pattern (vs. SMOS). All three radiometers use/used large homogeneous places on Earth's surface as calibration targets—parts of the ocean, Antarctica, and tropical forests. Despite the recent loss of Aquarius data, there is still hope for creating a longer-term L-band data set that spans the timeframe of all 3 missions. 2. Description of Analyses and Expected Results In this paper, we analyze SMAP brightness temperature data to quantify the spatial and temporal characteristics of external target areas in the oceans, Antarctica, forests, and other areas. Existing analyses have examined these targets in terms of averages, standard deviations, and other basic statistics (for Aquarius & SMOS as well). This paper will approach the problem from a signal processing perspective. Coupled with the use of SMAP's novel RFI-mitigated TBs, and the aforementioned lower noise and cleaner antenna pattern, it is expected that of the 3 L-band missions, SMAP should do the best job of characterizing such external targets. The resulting conclusions should be useful to extract the best possible TB calibration from all 3 missions, helping to inter-compare the TB from the 3 missions, and to eventually inter-calibrate the TBs into a single long-term dataset.

  10. Temporal-Spatial Pattern of Carbon Stocks in Forest Ecosystems in Shaanxi, Northwest China.

    PubMed

    Cui, Gaoyang; Chen, Yunming; Cao, Yang

    2015-01-01

    The precise and accurate quantitative evaluation of the temporal and spatial pattern of carbon (C) storage in forest ecosystems is critical for understanding the role of forests in the global terrestrial C cycle and is essential for formulating forest management policies to combat climate change. In this study, we examined the C dynamics of forest ecosystems in Shaanxi, northwest China, based on four forest inventories (1989-1993, 1994-1998, 1999-2003, and 2004-2008) and field-sampling measurements (2012). The results indicate that the total C storage of forest ecosystems in Shaanxi increased by approximately 29.3%, from 611.72 Tg in 1993 to 790.75 Tg in 2008, partially as a result of ecological restoration projects. The spatial pattern of C storage in forest ecosystems mainly exhibited a latitude-zonal distribution across the province, increasing from north (high latitude) to south (low latitude) generally, which signifies the effect of environmental conditions, chiefly water and heat related factors, on forest growth and C sequestration. In addition, different data sources and estimation methods had a significant effect on the results obtained, with the C stocks in 2008 being considerably overestimated (864.55 Tg) and slightly underestimated (778.07 Tg) when measured using the mean C density method and integrated method, respectively. Overall, our results demonstrated that the forest ecosystem in Shaanxi acted as a C sink over the last few decades. However, further studies should be carried out with a focus on adaption of plants to environmental factors along with forest management for vegetation restoration to maximize the C sequestration potential and to better cope with climate change. PMID:26353011

  11. Convergence and Divergence in the Evolution of Cat Skulls: Temporal and Spatial Patterns of Morphological Diversity

    PubMed Central

    Sakamoto, Manabu; Ruta, Marcello

    2012-01-01

    reconstructing temporal transitions across two-dimensional trait spaces, can be used in ecophenotypical and functional diversity studies, and may reveal novel patterns of morphospace occupation. PMID:22792186

  12. Prevalence and temporal pattern of hospital readmissions for patients with type I and type II diabetes

    PubMed Central

    Liu, Xiaoqian; Liu, Yuanyuan; Lv, Yuanjun; Li, Changping; Cui, Zhuang; Ma, Jun

    2015-01-01

    Objective Repeated hospitalisation for patients is common and costly, yet partly preventable. However, we know little about readmissions for patients with diabetes in China. The current study aims to assess the frequency and temporal pattern of and risk factors for all-cause readmission among hospitalised patients with diabetes in Tianjin, China. Method This retrospective, cohort analysis used the Tianjin Basic Medical Insurance Register System data of 2011. The patterns of and the reasons for all-cause readmissions for patients with diabetes were described. The differences of readmission-free survival (RFS) between newly and previously diagnosed patients were compared. Time-dependent Cox models were established to identify the risk factors for readmission at different time intervals after discharge. Results Readmission rates were approximately 30%, with the most common diagnoses of cerebral infarction (for type I) or diabetes (for type II) for patients with diabetes. The majority of patients were readmitted to the hospital after more than 90 days, followed by 8–30 days (all p=0.002). Approximately 37.2% and 42.8% of readmitted patients with type I and type II diabetes were diagnosed previously, and the RFS rates for previously diagnosed patients were significantly lower than for newly diagnosed patients at any time interval after discharge. Prior history of diabetes (all p<0.05), length of stay (all p<0.01) and reimbursement ratio (90% vs >92%, all p<0.0002) were consistently associated with the RFS for patients readmitted to the hospital at <7, 8–30, 31–60 and 61–90 days. Conclusions Hospital readmissions among patients with diabetes were affected by the diagnosis status. Patient characteristics and the quality of healthcare might regulate short-interval and long-interval hospital readmission, respectively, after discharge. PMID:26525716

  13. Characterization of spatial and temporal expression pattern of SCG10 during zebrafish development

    PubMed Central

    Burzynski, Grzegorz M.; Delalande, Jean-Marie; Shepherd, Iain

    2009-01-01

    SCG10 (Superior Cervical Ganglia 10, STMN2) is a member of the stathmin family of proteins. Stathmins regulate microtubule dynamics by inhibiting polymerization and promoting their depolymerization. SCG10 is believed to be a neuronal-specific stathmin that is enriched in the growth cones of developing neurons and plays a role in regulating neurite outgrowth. In all species examined so far, SCG10 is expressed in both the CNS and PNS. We have cloned two zebrafish SCG10 homologues and have determined the temporal and spatial expression pattern of both of these genes by RT-PCR and in situ hybridization. RT-PCR shows that both transcripts are expressed maternally and zygotically through at least 5 days. In situ hybridization analysis reveals that both SCG10 orthologues have dynamic, spatial expression patterns that are nearly identical to each other. Initially, these orthologues are expressed in discrete areas of the forebrain, midbrain, and hindbrain, as well as in the anterior and posterior lateral line ganglia and transiently in the spinal cord Rohon-Beard neurons. From 48hpf onwards, the level of expression of both genes increases and becomes mainly restricted to the anterior CNS (the forebrain region, retina, optic tectum and hindbrain), and to the cranial ganglia. From 72 to 96 hpf, SCG10 genes are also expressed in the developing neurons in the gut and in the surrounding intestinal mesenchyme. Our results provide a starting point for future studies that will investigate the in vivo function of SCG10 orthologues in zebrafish neural development. PMID:19272335

  14. Capturing spatial and temporal patterns of widespread, extreme flooding across Europe

    NASA Astrophysics Data System (ADS)

    Busby, Kathryn; Raven, Emma; Liu, Ye

    2013-04-01

    Statistical characterisation of physical hazards is an integral part of probabilistic catastrophe models used by the reinsurance industry to estimate losses from large scale events. Extreme flood events are not restricted by country boundaries which poses an issue for reinsurance companies as their exposures often extend beyond them. We discuss challenges and solutions that allow us to appropriately capture the spatial and temporal dependence of extreme hydrological events on a continental-scale, which in turn enables us to generate an industry-standard stochastic event set for estimating financial losses for widespread flooding. By presenting our event set methodology, we focus on explaining how extreme value theory (EVT) and dependence modelling are used to account for short, inconsistent hydrological data from different countries, and how to make appropriate statistical decisions that best characterise the nature of flooding across Europe. The consistency of input data is of vital importance when identifying historical flood patterns. Collating data from numerous sources inherently causes inconsistencies and we demonstrate our robust approach to assessing the data and refining it to compile a single consistent dataset. This dataset is then extrapolated using a parameterised EVT distribution to estimate extremes. Our method then captures the dependence of flood events across countries using an advanced multivariate extreme value model. Throughout, important statistical decisions are explored including: (1) distribution choice; (2) the threshold to apply for extracting extreme data points; (3) a regional analysis; (4) the definition of a flood event, which is often linked with reinsurance industry's hour's clause; and (5) handling of missing values. Finally, having modelled the historical patterns of flooding across Europe, we sample from this model to generate our stochastic event set comprising of thousands of events over thousands of years. We then briefly

  15. Spatio-Temporal Expression Patterns of Arabidopsis thaliana and Medicago truncatula Defensin-Like Genes

    PubMed Central

    Nallu, Sumitha; Wang, Lin; Botanga, Christopher J.; Gomez, S. Karen; Costa, Liliana M.; Harrison, Maria J.; Samac, Deborah A.; Glazebrook, Jane; Katagiri, Fumiaki; Gutierrez-Marcos, Jose F.; VandenBosch, Kathryn A.

    2013-01-01

    Plant genomes contain several hundred defensin-like (DEFL) genes that encode short cysteine-rich proteins resembling defensins, which are well known antimicrobial polypeptides. Little is known about the expression patterns or functions of many DEFLs because most were discovered recently and hence are not well represented on standard microarrays. We designed a custom Affymetrix chip consisting of probe sets for 317 and 684 DEFLs from Arabidopsis thaliana and Medicago truncatula, respectively for cataloging DEFL expression in a variety of plant organs at different developmental stages and during symbiotic and pathogenic associations. The microarray analysis provided evidence for the transcription of 71% and 90% of the DEFLs identified in Arabidopsis and Medicago, respectively, including many of the recently annotated DEFL genes that previously lacked expression information. Both model plants contain a subset of DEFLs specifically expressed in seeds or fruits. A few DEFLs, including some plant defensins, were significantly up-regulated in Arabidopsis leaves inoculated with Alternaria brassicicola or Pseudomonas syringae pathogens. Among these, some were dependent on jasmonic acid signaling or were associated with specific types of immune responses. There were notable differences in DEFL gene expression patterns between Arabidopsis and Medicago, as the majority of Arabidopsis DEFLs were expressed in inflorescences, while only a few exhibited root-enhanced expression. By contrast, Medicago DEFLs were most prominently expressed in nitrogen-fixing root nodules. Thus, our data document salient differences in DEFL temporal and spatial expression between Arabidopsis and Medicago, suggesting distinct signaling routes and distinct roles for these proteins in the two plant species. PMID:23527067

  16. Temporal Dynamics of Sodic Playa Salt Crust Patterns: Implications for Aeolian Dust Emission Potential

    NASA Astrophysics Data System (ADS)

    Nield, J. M.; King, J.; Bryant, R. G.; Wiggs, G.; Eckardt, F. D.; Thomas, D. S.; Washington, R.

    2013-12-01

    Salt pans (or playas) are common in arid environments and can be major sources of windblown mineral dust, but there are uncertainties associated with their dust emission potential. These landforms typically form crusts which modify both their erosivity and erodibility by limiting sediment availability, modifying surface and aerodynamic roughness and limiting evaporation rates and sediment production. Here we show the relationship between seasonal surface moisture change and crust pattern development based on both remote-sensing and field surface and atmospheric measurements. We use high resolution (sub-cm) terrestrial laser scanning (TLS; ground-based lidar) surveys over weekly, monthly and annual timescales to accurately characterise crustal ridge thrusting and collapse. This can be as much as 2 mm/day on fresh pan areas that have recently been reset by flooding. Over a two month period, this ridge growth can change aerodynamic roughness length values by 6.5 mm. At the same time, crack densities across the surface increase and this raises the availability of erodible fluffy, low density dust source sediment stored below the crust layer. Ridge spaces are defined in the early stages of crust development, as identified by Fourier Transform analysis, but wider wavelengths become more pronounced over time. We present a conceptual model accounting for the driving forces (subsurface, surface and atmospheric moisture) and feedbacks between these and surface shape that lead to crust pattern trajectories between highly emissive degraded surfaces and less emissive ridged or continuous crusts. These findings improve our understanding of temporal changes in dust availability and supply from playa source regions.

  17. Temporal-Spatial Pattern of Carbon Stocks in Forest Ecosystems in Shaanxi, Northwest China

    PubMed Central

    Cui, Gaoyang; Chen, Yunming; Cao, Yang

    2015-01-01

    The precise and accurate quantitative evaluation of the temporal and spatial pattern of carbon (C) storage in forest ecosystems is critical for understanding the role of forests in the global terrestrial C cycle and is essential for formulating forest management policies to combat climate change. In this study, we examined the C dynamics of forest ecosystems in Shaanxi, northwest China, based on four forest inventories (1989–1993, 1994–1998, 1999–2003, and 2004–2008) and field-sampling measurements (2012). The results indicate that the total C storage of forest ecosystems in Shaanxi increased by approximately 29.3%, from 611.72 Tg in 1993 to 790.75 Tg in 2008, partially as a result of ecological restoration projects. The spatial pattern of C storage in forest ecosystems mainly exhibited a latitude-zonal distribution across the province, increasing from north (high latitude) to south (low latitude) generally, which signifies the effect of environmental conditions, chiefly water and heat related factors, on forest growth and C sequestration. In addition, different data sources and estimation methods had a significant effect on the results obtained, with the C stocks in 2008 being considerably overestimated (864.55 Tg) and slightly underestimated (778.07 Tg) when measured using the mean C density method and integrated method, respectively. Overall, our results demonstrated that the forest ecosystem in Shaanxi acted as a C sink over the last few decades. However, further studies should be carried out with a focus on adaption of plants to environmental factors along with forest management for vegetation restoration to maximize the C sequestration potential and to better cope with climate change. PMID:26353011

  18. Inferring the Spatio-temporal Patterns of Dengue Transmission from Surveillance Data in Guangzhou, China

    PubMed Central

    Liu, Jiming; Tan, Qi; Shi, Benyun

    2016-01-01

    Background Dengue is a serious vector-borne disease, and incidence rates have significantly increased during the past few years, particularly in 2014 in Guangzhou. The current situation is more complicated, due to various factors such as climate warming, urbanization, population increase, and human mobility. The purpose of this study is to detect dengue transmission patterns and identify the disease dispersion dynamics in Guangzhou, China. Methodology We conducted surveys in 12 districts of Guangzhou, and collected daily data of Breteau index (BI) and reported cases between September and November 2014 from the public health authority reports. Based on the available data and the Ross-Macdonald theory, we propose a dengue transmission model that systematically integrates entomologic, demographic, and environmental information. In this model, we use (1) BI data and geographic variables to evaluate the spatial heterogeneities of Aedes mosquitoes, (2) a radiation model to simulate the daily mobility of humans, and (3) a Markov chain Monte Carlo (MCMC) method to estimate the model parameters. Results/Conclusions By implementing our proposed model, we can (1) estimate the incidence rates of dengue, and trace the infection time and locations, (2) assess risk factors and evaluate the infection threat in a city, and (3) evaluate the primary diffusion process in different districts. From the results, we can see that dengue infections exhibited a spatial and temporal variation during 2014 in Guangzhou. We find that urbanization, vector activities, and human behavior play significant roles in shaping the dengue outbreak and the patterns of its spread. This study offers useful information on dengue dynamics, which can help policy makers improve control and prevention measures. PMID:27105350

  19. Multivariate pattern analysis reveals anatomical connectivity differences between the left and right mesial temporal lobe epilepsy.

    PubMed

    Fang, Peng; An, Jie; Zeng, Ling-Li; Shen, Hui; Chen, Fanglin; Wang, Wensheng; Qiu, Shijun; Hu, Dewen

    2015-01-01

    Previous studies have demonstrated differences of clinical signs and functional brain network organizations between the left and right mesial temporal lobe epilepsy (mTLE), but the anatomical connectivity differences underlying functional variance between the left and right mTLE remain uncharacterized. We examined 43 (22 left, 21 right) mTLE patients with hippocampal sclerosis and 39 healthy controls using diffusion tensor imaging. After the whole-brain anatomical networks were constructed for each subject, multivariate pattern analysis was applied to classify the left mTLE from the right mTLE and extract the anatomical connectivity differences between the left and right mTLE patients. The classification results reveal 93.0% accuracy for the left mTLE versus the right mTLE, 93.4% accuracy for the left mTLE versus controls and 90.0% accuracy for the right mTLE versus controls. Compared with the right mTLE, the left mTLE exhibited a different connectivity pattern in the cortical-limbic network and cerebellum. The majority of the most discriminating anatomical connections were located within or across the cortical-limbic network and cerebellum, thereby indicating that these disease-related anatomical network alterations may give rise to a portion of the complex of emotional and memory deficit between the left and right mTLE. Moreover, the orbitofrontal gyrus, cingulate cortex, hippocampus and parahippocampal gyrus, which exhibit high discriminative power in classification, may play critical roles in the pathophysiology of mTLE. The current study demonstrated that anatomical connectivity differences between the left mTLE and the right mTLE may have the potential to serve as a neuroimaging biomarker to guide personalized diagnosis of the left and right mTLE. PMID:25844312

  20. Neuromolecular Imaging Shows Temporal Synchrony Patterns between Serotonin and Movement within Neuronal Motor Circuits in the Brain

    PubMed Central

    Broderick, Patricia A.

    2013-01-01

    The present discourse links the electrical and chemical properties of the brain with neurotransmitters and movement behaviors to further elucidate strategies to diagnose and treat brain disease. Neuromolecular imaging (NMI), based on electrochemical principles, is used to detect serotonin in nerve terminals (dorsal and ventral striata) and somatodendrites (ventral tegmentum) of reward/motor mesocorticolimbic and nigrostriatal brain circuits. Neuronal release of serotonin is detected at the same time and in the same animal, freely moving and unrestrained, while open-field behaviors are monitored via infrared photobeams. The purpose is to emphasize the unique ability of NMI and the BRODERICK PROBE® biosensors to empirically image a pattern of temporal synchrony, previously reported, for example, in Aplysia using central pattern generators (CPGs), serotonin and cerebral peptide-2. Temporal synchrony is reviewed within the context of the literature on central pattern generators, neurotransmitters and movement disorders. Specifically, temporal synchrony data are derived from studies on psychostimulant behavior with and without cocaine while at the same time and continuously, serotonin release in motor neurons within basal ganglia, is detected. The results show that temporal synchrony between the neurotransmitter, serotonin and natural movement occurs when the brain is NOT injured via, e.g., trauma, addictive drugs or psychiatric illness. In striking contrast, in the case of serotonin and cocaine-induced psychostimulant behavior, a different form of synchrony and also asynchrony can occur. Thus, the known dysfunctional movement behavior produced by cocaine may well be related to the loss of temporal synchrony, the loss of the ability to match serotonin in brain with motor activity. The empirical study of temporal synchrony patterns in humans and animals may be more relevant to the dynamics of motor circuits and movement behaviors than are studies of static parameters

  1. Novel approaches in Extended Principal Components Analysis to compare spatio-temporal patterns among multiple image time series

    NASA Astrophysics Data System (ADS)

    Neeti, N.; Eastman, R.

    2012-12-01

    Extended Principal Components Analysis (EPCA) aims to examine the patterns of variability shared among multiple image time series. Conventionally, this is done by virtually extending the spatial dimension of the time series by spatially concatenating the different time series and then performing S-mode PCA. In S-mode analysis, samples in space are the statistical variables and samples in time are the statistical observations. This paper introduces the concept of temporal concatenation of multiple image time series to perform EPCA. EPCA can also be done with T-mode orientation in which samples in time are the statistical variables and samples in space are the statistical observations. This leads to a total of four orientations in which EPCA can be carried out. This research explores these four orientations and their implications in investigating spatio-temporal relationships among multiple time series. This research demonstrates that EPCA carried out with temporal concatenation of the multiple time series with T-mode (tT) is able to identify similar spatial patterns among multiple time series. The conventional S-mode EPCA with spatial concatenation (sS) identifies similar temporal patterns among multiple time series. The other two modes, namely T-mode with spatial concatenation (sT) and S-mode with temporal concatenation (tS), are able to identify patterns which share consistent temporal phase relationships and consistent spatial phase relationships with each other, respectively. In a case study using three sets of precipitation time series data from GPCP, CMAP and NCEP-DOE, the results show that examination of all four modes provides an effective basis comparison of the series.

  2. Spatial and temporal variability of subsurface flow patterns at the hillslope scale: an experimental analysis

    NASA Astrophysics Data System (ADS)

    Penna, Daniele; Hopp, Luisa; Dalla Fontana, Giancarlo; Borga, Marco

    2014-05-01

    Despite the importance of subsurface flow in regulating catchment runoff and slope stability, the dominant controls on the spatial and temporal variability of subsurface flow patterns on hillslopes of headwater catchments are still poorly understood. In this work, we used groundwater data from spatially distributed piezometric wells on two alpine hillslopes to investigate the main factors controlling the water table response to precipitation. Particularly, we tested the following hypotheses: i) piezometric response triggering is jointly controlled by antecedent moisture condition and rainfall depth; ii) contrasting hillslope topographic features affect the magnitude and dynamics of piezometric response, and iii) soil depth controls the timing of piezometric response. Two steep hillslopes of similar size, soil properties and vegetation cover but contrasting topography (divergent-convex and relatively planar morphology) in the 0.14 km2 Bridge Creek Catchment (Dolomites, Central-Eastern Italian Alps) were instrumented with 24 piezometric wells, ranging in depth between 0.7 m and 1.5 m from the soil surface. The analysis was conducted for 63 rainfall-runoff events selected over three years in the snow-free months. Results show that piezometric response, although very variable both in space and in time, was clearly distinct for events that occurred during wet or dry conditions, distinguished on the basis of a threshold relation between stormflow and an index combining antecedent soil moisture and rainfall depth. Correlation analysis based on two metrics of transient water table response (percentage of well activation and piezometric peak) revealed that antecedent soil water content alone was the poorest predictor of piezometric response whereas the highest degree of variance was explained by the combination of rainfall and antecedent soil moisture. Hillslope topography played a significant role on water table peak only for the site characterized by an overall convex

  3. Multi-Voxel Pattern Analysis of Noun and Verb Differences in Ventral Temporal Cortex Marked Revision

    PubMed Central

    Boylan, Christine; Trueswell, John C.; Thompson-Schill, Sharon L.

    2014-01-01

    Recent evidence suggests a probabilistic relationship exists between the phonological/orthographic form of a word and its lexical-syntactic category (specifically nouns vs. verbs) such that syntactic prediction may elicit form-based estimates in sensory cortex. We tested this hypothesis by conducting multi-voxel pattern analysis (MVPA) of fMRI data from early visual cortex (EVC), left ventral temporal (VT) cortex, and a subregion of the latter - the left mid fusiform gyrus (mid FG), sometimes called the “visual word form area.” Crucially, we examined only those volumes sampled when subjects were predicting, but not viewing, nouns and verbs. This allowed us to investigate prediction effects in visual areas without any bottom-up orthographic input. We found that voxels in VT and mid FG, but not in EVC, were able to classify noun-predictive trials vs. verb-predictive trials in sentence contexts, suggesting that sentence-level predictions are sufficient to generate word form-based estimates in visual areas. PMID:25156159

  4. Different Temporal and Spatial Gene Expression Patterns Occur during Anther Development.

    PubMed Central

    Koltunow, AM; Truettner, J; Cox, KH; Wallroth, M; Goldberg, RB

    1990-01-01

    We studied the temporal and spatial regulation of three mRNA sequence sets that are present exclusively, or at elevated levels, in the tobacco anther. One mRNA set accumulates in the tapetum and decays as the tapetum degenerates later in anther development. The second mRNA set accumulates after the tapetal-specific mRNAs, is localized within the stomium and connective, and also decays as these cell types degenerate during anther maturation. The third mRNA sequence set persists throughout anther development and is localized within most anther tissues. A tapetal-specific gene, designated as TA29, was isolated from a tobacco genome library. Runoff transcription studies and experiments with chimeric [beta]-glucuronidase and diphtheria toxin A-chain genes showed that the TA29 gene is regulated primarily at the transcriptional level and that a 122-base pair 5[prime] region can program the tapetal-specific expression pattern. Destruction of the tapetum by the cytotoxic gene had no effect on the differentiation and/or function of surrounding sporophytic tissues but led to the production of male-sterile plants. Together, our studies show that several independent gene expression programs occur during anther development and that these programs correlate with the differentiated state of specific anther cell types. PMID:12354953

  5. Spatio-temporal pattern analysis of urban thermal environment of different types of cities

    NASA Astrophysics Data System (ADS)

    Liu, Yang; Liu, Huanjun; Zhang, Yuanzhi; Zhang, Xinle; Zang, Hongting; Hu, Wen

    2014-03-01

    Cities with different functions show variable thermal patterns. This study directs at horizontal contrasting the heat island effect of cities and towns in the same latitude. The data source was Landsat TM, by which the thermal infrared bands is used with the algorithm of ARTIS inversion of Heilongjiang Province to acquire the surface temperature of Ha-Qi different types of cities in 1995(1989), 2006 and 2010. In this paper we analyzed the land surface temperature(LST) of temporal, spatial and regional. The results show that a high zone is mainly centralized in the old city and industrial zone. Impervious surface increase leads to temperature rise. Relatively high and low zone fluctuation is due to human activities influence. Climate is one of the key factors to affect the LST, such as precipitation and drought. Through the analysis of urban thermal environment, the process of urbanization can be monitored, to provide accurate information for the quality evaluation of urban thermal environment and heat source survey.

  6. Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing.

    PubMed

    Li, Guosheng; Wang, Dongfang; Yang, Ruolin; Logan, Kyle; Chen, Hao; Zhang, Shanshan; Skaggs, Megan I; Lloyd, Alan; Burnett, William J; Laurie, John D; Hunter, Brenda G; Dannenhoffer, Joanne M; Larkins, Brian A; Drews, Gary N; Wang, Xiangfeng; Yadegari, Ramin

    2014-05-27

    Endosperm is a filial structure resulting from a second fertilization event in angiosperms. As an absorptive storage organ, endosperm plays an essential role in support of embryo development and seedling germination. The accumulation of carbohydrate and protein storage products in cereal endosperm provides humanity with a major portion of its food, feed, and renewable resources. Little is known regarding the regulatory gene networks controlling endosperm proliferation and differentiation. As a first step toward understanding these networks, we profiled all mRNAs in the maize kernel and endosperm at eight successive stages during the first 12 d after pollination. Analysis of these gene sets identified temporal programs of gene expression, including hundreds of transcription-factor genes. We found a close correlation of the sequentially expressed gene sets with distinct cellular and metabolic programs in distinct compartments of the developing endosperm. The results constitute a preliminary atlas of spatiotemporal patterns of endosperm gene expression in support of future efforts for understanding the underlying mechanisms that control seed yield and quality. PMID:24821765

  7. Temporal patterns in the intertidal faunal community at the mouth of a tropical estuary.

    PubMed

    Lacerda, C H F; Barletta, M; Dantas, D V

    2014-11-01

    The use of intertidal sandy beaches by fish and macrocrustaceans was studied at different temporal scales at the mouth of a tropical estuary. Samples were taken along the lunar and diel cycles in the late dry and rainy seasons. Fish assemblage (number of species, density and biomass), crustaceans and wrack biomass, showed significant interactions among all studied factors, and the combination of moon phase and diel cycle, resulting in different patterns of environmental variables (depth, water temperature and dissolved oxygen), affected habitat use by the different species. Variances in faunal community were detected between seasons, stimulated by salinity fluctuations from freshwater input during the rainy season. These differences suggest an important cycling of habitats and an increase in connectivity between adjacent habitats (estuary and coastal waters). Moreover, the results showed that this intertidal sandy beach also provides an alternative nursery and protected shallow-water area for the initial development phase of many marine and estuarine species. In addition, this intertidal habitat plays an important role in the maintenance of the ecological functioning of the estuarine-coastal ecosystem continuum. PMID:25315884

  8. Temporal and spatial patterns of anthropogenic disturbance at McMurdo Station, Antarctica

    NASA Astrophysics Data System (ADS)

    Kennicutt, Mahlon C., II; Klein, Andrew; Montagna, Paul; Sweet, Stephen; Wade, Terry; Palmer, Terence; Sericano, Jose; Denoux, Guy

    2010-07-01

    Human visitations to Antarctica have increased in recent decades, raising concerns about preserving the continent's environmental quality. To understand the spatial and temporal patterns of anthropogenic disturbances at the largest scientific station in Antarctica, McMurdo Station, a long-term monitoring program has been implemented. Results from the first nine years (1999-2007) of monitoring are reported. Most physical disturbance of land surfaces occurred prior to 1970 during initial establishment of the station. Hydrocarbons from fuel and anthropogenic metals occur in patches of tens to hundreds of square meters in areas of fuel usage and storage. Most soil contaminant concentrations are not expected to elicit biological responses. Past disposal practices have contaminated marine sediments with polychlorinated biphenyls (PCBs), petroleum hydrocarbons, and metals in close proximity to the station that often exceed concentrations expected to elicit biological responses. Chemical contamination and organic enrichment reduced marine benthic ecological integrity within a few hundred meters offshore of the station. Contaminants were detected in marine benthic organisms confirming bioavailability and uptake. PCBs in sediments are similar to suspected source materials, indicating minimal microbial degradation decades after release. Anthropogenic disturbance of the marine environment is likely to persist for decades. A number of monitoring design elements, indicators and methodologies used in temperate climates were effective and provide guidance for monitoring programs elsewhere in Antarctica.

  9. Temporal patterns of infiltration into a water repellent soil under field conditions

    NASA Astrophysics Data System (ADS)

    Ward, Phil; Roper, Margaret; Micin, Shayne; Jongepier, Ramona

    2014-05-01

    Water repellency causes substantial economic losses for farmers in southern Australia through impacts on crop growth and weed germination. However, recent research has demonstrated that laboratory measurements of water repellency may not be a reliable indicator of the severity of symptoms experienced in the field. In particular, crop residue retention and minimal soil disturbance led to increased water repellency, but was also associated with higher soil water contents measured at strategic times of the year. Little is known about the temporal patterns of soil water storage close to the soil surface in a water repellent sand. In this research we measured soil water content at a depth of 0.05 m at 15-minute intervals from June 2011 to October 2012, under various treatment combinations of residue retention and soil disturbance. Measurements were made in both 'crop row' and 'crop inter-row' positions. For a rainfall event (9.2 mm) in March 2012, prior to crop seeding, plots previously established with no-till absorbed significantly more water (increase in soil water content of 0.074 v/v) than plots conventionally cultivated (0.038 v/v). In June 2012 (12.6 mm), 4 weeks after crop seeding, tillage was again significant, and there was a significant interaction between tillage and 'row' or 'inter-row' position. These results demonstrate the importance of crop management in modifying the response of water repellent soils to rainfall in the field.

  10. Temporal-spatial patterns of wetlands changes in China and driving force analysis

    NASA Astrophysics Data System (ADS)

    Zhang, Shuwen; Zhang, Yangzhen; Chen, Jing; Zhang, Yanhong; Gao, Zhiqiang

    2004-11-01

    Wetlands are special ecosystem lying between the terrestrial and open-water areas. Similar to forest, grass, and ocean ecosystems, wetlands take parts in protecting environments and exploring resources. In China, wetlands are undergoing significant degradation that is caused by both natural processes and human activities. In order to know the details of wetlands change so as to take suitable actions to protect wetlands, Landsat TM/ETM images are used as main data sets. Accessorial data such as topography map and China mire map are also used. In this paper, wetlands are defined as swamplands, potholes, wet meadow, riverine, lacurtrine. Three periods (1990a, 1995a, 2000a) data of wetlands in china are extracted from TM through the interactive interpretation. Applying spatial analysis function of GIS technology and statistics methods, the spatial distribution pattern and temporal changes are studied. The research results show that, during the 10 years from 1990 to 2000, wetlands area decreased largely, and spatial difference is notable. Finally, the driving forces resulting in mires changes are analyzed.

  11. Temporal-Spatial Neural Activation Patterns Linked to Perceptual Encoding of Emotional Salience

    PubMed Central

    Todd, Rebecca M.; Taylor, Margot J.; Robertson, Amanda; Cassel, Daniel B.; Doesberg, Sam M.; Lee, Daniel H.; Shek, Pang N.; Pang, Elizabeth W.

    2014-01-01

    It is well known that we continuously filter incoming sensory information, selectively allocating attention to what is important while suppressing distracting or irrelevant information. Yet questions remain about spatiotemporal patterns of neural processes underlying attentional biases toward emotionally significant aspects of the world. One index of affectively biased attention is an emotional variant of an attentional blink (AB) paradigm, which reveals enhanced perceptual encoding for emotionally salient over neutral stimuli under conditions of limited executive attention. The present study took advantage of the high spatial and temporal resolution of magnetoencephalography (MEG) to investigate neural activation related to emotional and neutral targets in an AB task. MEG data were collected while participants performed a rapid stimulus visual presentation task in which two target stimuli were embedded in a stream of distractor words. The first target (T1) was a number and the second (T2) either an emotionally salient or neutral word. Behavioural results replicated previous findings of greater accuracy for emotionally salient than neutral T2 words. MEG source analyses showed that activation in orbitofrontal cortex, characterized by greater power in the theta and alpha bands, and dorsolateral prefrontal activation were associated with successful perceptual encoding of emotionally salient relative to neutral words. These effects were observed between 250 and 550 ms, latencies associated with discrimination of perceived from unperceived stimuli. These data suggest that important nodes of both emotional salience and frontoparietal executive systems are associated with the emotional modulation of the attentional blink. PMID:24727751

  12. Temporal Patterns in Bivalve Excurrent Flow Under Varying Ambient Flow Conditions

    NASA Astrophysics Data System (ADS)

    Delavan, S. K.; Webster, D. R.

    2008-11-01

    The predator-prey relationship between blue crabs (Callinectes sapidus) and bivalve clams (Mercenaria mercenaria) is mediated by the transport of metabolites released by the prey (clams) and transported downstream as a passive scalar. This study focuses on how the prey behavior contributes to the information available within the odorant plume. Clams may modify factors such as excurrent flux, flow unsteadiness, and siphon height and diameter. A Particle Image Velocimetry (PIV) system has been used to quantify the temporal patterns in the excurrent jet of the bivalve siphon under varying ambient flow conditions. According to a spectral analysis of siphon excurrent velocity time records, there is a low frequency periodic component that could contribute to the mixing of clam metabolites through the generation of persistent jet vorticies. Also, fractal analysis of the velocity time records shows that as the ambient velocity increases the excurrent velocity becomes more correlated and less random. These results suggest that for high ambient flow a low frequency periodicity may be sufficient to promote the mixing and dilution of metabolites. In contrast, for low ambient flow more random siphon excurrent velocity may be required to reduce the amount of information available to predators in the downstream odorant plume.

  13. Patterns of spatial and temporal distribution of the asparagus miner (Diptera: Agromyzidae): implications for management.

    PubMed

    Morrison, William R; Szendrei, Zsofia

    2013-06-01

    The asparagus miner is an obligatory feeder on asparagus and a putative vector for pathogenic fungi implicated in the early decline of asparagus fields. To date, the distribution of the asparagus miner over space and time is poorly understood. Our study evaluated the spatial and temporal pattern of adult asparagus miners in commercial asparagus fields in Michigan in 2011 and 2012. We sampled adults and damage weekly during the growing season using yellow sticky traps outside, at the edge, and inside commercial fields. Yellow sticky traps at each trapping location were placed at the canopy and ground level to determine vertical distribution of adults. During the first generation, adults were more evenly distributed throughout the field. In the second generation, adults were more commonly found on the edge of the field. Overall, there was a greater percent of mining damage near the edge of the field. Additionally, three times as many asparagus miners were found in the canopy compared with ground-level traps. There were 12 times as many asparagus miner adults on edges bordered by another asparagus field than on ones bordered by forest. Taken together, our results indicate that while asparagus miner management in the beginning of the growing season should focus on the entire field, in the latter half of the season, growers could save money and resources by targeting miner adults at the edges of fields. Finally, conserving the remaining naturally forested landscape and planting borders of trees may help ameliorate pest pressure in asparagus fields. PMID:23865186

  14. Temporal pattern of suicide risk in young individuals with early psychosis.

    PubMed

    Fedyszyn, Izabela E; Robinson, Jo; Matyas, Thomas; Harris, Meredith G; Paxton, Susan J

    2010-01-30

    Individuals with a first episode of psychotic illness are known to be at high risk of suicide, yet little is understood about the timing of risk in this critical period. The present study aimed to examine the temporal pattern of suicide risk in patients with early psychosis (EP) and to determine whether discrete periods of significantly elevated risk can be identified up to 24 months after commencing treatment. Suicidality ratings collected each month as part of patient routine assessment at the Early Psychosis Prevention and Intervention Centre (EPPIC) were retrieved from the service database for patients treated between December 2002 and December 2005 (N=696). Time-series analysis was performed on suicide risk estimated from the aggregated data of 94 individuals who met the study inclusion criteria. Suicide risk was highest in the first month of treatment, decreasing rapidly over the next 6 months and declining slightly thereafter. A power function adequately described this curvilinear trend. Fluctuations around the trend were unpredictable, except for a mild tendency to reverse from month to month, and did not reach statistical significance. The findings suggest limited scope for preventative interventions driven by chronology alone. Intensive routine suicide screening across the course of treatment may facilitate identification and early management of EP patients at suicide risk. PMID:19962766

  15. Fish in a ring: spatio-temporal pattern formation in one-dimensional animal groups

    PubMed Central

    Abaid, Nicole; Porfiri, Maurizio

    2010-01-01

    In this work, we study the collective behaviour of fish shoals in annular domains. Shoal mates are modelled as self-propelled particles moving on a discrete lattice. Collective decision-making is determined by information exchange among neighbours. Neighbourhoods are specified using the perceptual limit and numerosity of fish. Fish self-propulsion and obedience to group decisions are described through random variables. Spatio-temporal schooling patterns are measured using coarse observables adapted from the literature on coupled oscillator networks and features of the time-varying network describing the fish-to-fish information exchange. Experiments on zebrafish schooling in an annular tank are used to validate the model. Effects of group size and obedience parameter on coarse observables and network features are explored to understand the implications of perceptual numerosity and spatial density on fish schooling. The proposed model is also compared with a more traditional metric model, in which the numerosity constraint is released and fish interactions depend only on physical configurations. Comparison shows that the topological regime on which the proposed model is constructed allows for interpreting characteristic behaviours observed in the experimental study that are not captured by the metric model. PMID:20413559

  16. CT Scans in Young People in Great Britain: Temporal and Descriptive Patterns, 1993–2002

    PubMed Central

    Pearce, Mark S.; Salotti, Jane A.; Howe, Nicola L.; McHugh, Kieran; Kim, Kwang Pyo; Lee, Choonsik; Craft, Alan W.; Berrington de Gonzaléz, Amy; Parker, Louise

    2012-01-01

    Background. Although using computed tomography (CT) can be greatly beneficial, the associated relatively high radiation doses have led to growing concerns in relation to potential associations with risk of future cancer. Very little has been published regarding the trends of CT use in young people. Therefore, our objective was to assess temporal and other patterns in CT usage among patients aged under 22 years in Great Britain from 1993 to 2002. Methods. Electronic data were obtained from the Radiology Information Systems of 81 hospital trusts within Great Britain. All included patients were aged under 22 years and examined using CT between 1993 and 2002, with accessible radiology records. Results. The number of CT examinations doubled over the study period. While increases in numbers of recorded examinations were seen across all age groups, the greatest increases were in the older patients, most notably those aged 15–19 years of age. Sixty percent of CT examinations were of the head, with the percentages varying with calendar year and patient age. Conclusions. In contrast to previous data from the North of England, the doubling of CT use was not accompanied by an increase in numbers of multiple examinations to the same individual. PMID:22792457

  17. The use of satellite data for monitoring temporal and spatial patterns of fire: a comprehensive review

    NASA Astrophysics Data System (ADS)

    Lasaponara, R.

    2009-04-01

    Remotely sensed (RS) data can fruitfully support both research activities and operative monitoring of fire at different temporal and spatial scales with a synoptic view and cost effective technologies. "The contribution of remote sensing (RS) to forest fires may be grouped in three categories, according to the three phases of fire management: (i) risk estimation (before fire), (ii) detection (during fire) and (iii) assessment (after fire)" Chuvieco (2006). Relating each phase, wide research activities have been conducted over the years. (i) Risk estimation (before fire) has been mainly based on the use of RS data for (i) monitoring vegetation stress and assessing variations in vegetation moisture content, (ii) fuel type mapping, at different temporal and spatial scales from global, regional down to a local scale (using AVHRR, MODIS, TM, ASTER, Quickbird images and airborne hyperspectral and LIDAR data). Danger estimation has been mainly based on the use of AVHRR (onborad NOAA), MODIS (onboard TERRA and AQUA), VEGETATION (onboard SPOT) due to the technical characteristics (i.e. spectral, spatial and temporal resolution). Nevertheless microwave data have been also used for vegetation monitoring. (ii) Detection: identification of active fires, estimation of fire radiative energy and fire emission. AVHRR was one of the first satellite sensors used for setting up fire detection algorithms. The availbility of MODIS allowed us to obtain global fire products free downloaded from NASA web site. Sensors onboard geostationary satellite platforms, such as GOES, SEVIRI, have been used for fire detection, to obtain a high temporal resolution (at around 15 minutes) monitoring of active fires. (iii) Post fire damage assessment includes: burnt area mapping, fire emission, fire severity, vegetation recovery, fire resilience estimation, and, more recently, fire regime characterization. Chuvieco E. L. Giglio, C. Justice, 2008 Global charactrerization of fire activity: toward defining

  18. Temporal Patterns of Larval Fish Occurrence in a Large Subtropical River

    PubMed Central

    Shuai, Fangmin; Li, Xinhui; Li, Yuefei; Li, Jie; Yang, Jiping; Lek, Sovan

    2016-01-01

    Knowledge of temporal patterns of larval fish occurrence is limited in south China, despite its ecological importance. This research examines the annual and seasonal patterns of fish larval presence in the large subtropical Pearl River. Data is based on samples collected every two days, from 2006 to 2013. In total, 45 taxa representing 13 families and eight orders were sampled. The dominant larval family was Cyprinidae, accounting for 27 taxa. Squaliobarbus curriculus was the most abundant species, followed by Megalobrama terminalis, Xenocypris davidi, Cirrhinus molitorella, Hemiculter leuscisculus and Squalidus argentatus. Fish larvae abundances varied significantly throughout the seasons (multivariate analyses: Cluster, SIMPROF and ANOSIM). The greatest numbers occurred between May and September, peaking from June through August, which corresponds to the reproductive season. In this study, redundancy analysis was used to describe the relationship between fish larval abundance and associated environmental factors. Mean water temperature, river discharge, atmospheric pressure, maximum temperature and precipitation play important roles in larval occurrence patterns. According to seasonal variations, fish larvae occurrence is mainly affected by water temperature. It was also noted that the occurrence of Salanx reevesii and Cyprinus carpio larvae is associated with higher dissolved oxygen (DO) concentrations, higher atmospheric pressure and lower water temperatures which occur in the spring. On the other hand, M. terminalis, X. davidi, and C. molitorella are associated with high precipitation, high river discharge, low atmospheric pressure and low DO concentrations which featured during the summer months. S. curriculus also peaks in the summer and is associated with peak water temperatures and minimum NH3–N concentrations. Rhinogobius giurinus occur when higher atmospheric pressure, lower precipitation and lower river discharges occur in the autumn. Dominant fish

  19. Temporal Patterns of Larval Fish Occurrence in a Large Subtropical River.

    PubMed

    Shuai, Fangmin; Li, Xinhui; Li, Yuefei; Li, Jie; Yang, Jiping; Lek, Sovan

    2016-01-01

    Knowledge of temporal patterns of larval fish occurrence is limited in south China, despite its ecological importance. This research examines the annual and seasonal patterns of fish larval presence in the large subtropical Pearl River. Data is based on samples collected every two days, from 2006 to 2013. In total, 45 taxa representing 13 families and eight orders were sampled. The dominant larval family was Cyprinidae, accounting for 27 taxa. Squaliobarbus curriculus was the most abundant species, followed by Megalobrama terminalis, Xenocypris davidi, Cirrhinus molitorella, Hemiculter leuscisculus and Squalidus argentatus. Fish larvae abundances varied significantly throughout the seasons (multivariate analyses: Cluster, SIMPROF and ANOSIM). The greatest numbers occurred between May and September, peaking from June through August, which corresponds to the reproductive season. In this study, redundancy analysis was used to describe the relationship between fish larval abundance and associated environmental factors. Mean water temperature, river discharge, atmospheric pressure, maximum temperature and precipitation play important roles in larval occurrence patterns. According to seasonal variations, fish larvae occurrence is mainly affected by water temperature. It was also noted that the occurrence of Salanx reevesii and Cyprinus carpio larvae is associated with higher dissolved oxygen (DO) concentrations, higher atmospheric pressure and lower water temperatures which occur in the spring. On the other hand, M. terminalis, X. davidi, and C. molitorella are associated with high precipitation, high river discharge, low atmospheric pressure and low DO concentrations which featured during the summer months. S. curriculus also peaks in the summer and is associated with peak water temperatures and minimum NH3-N concentrations. Rhinogobius giurinus occur when higher atmospheric pressure, lower precipitation and lower river discharges occur in the autumn. Dominant fish

  20. Discovering temporal patterns in water quality time series, focusing on floods with the LDA method

    NASA Astrophysics Data System (ADS)

    Hélène Aubert, Alice; Tavenard, Romain; Emonet, Rémi; Malinowski, Simon; Guyet, Thomas; Quiniou, René; Odobez, Jean-Marc; Gascuel-Odoux, Chantal

    2013-04-01

    Studying floods has been a major issue in hydrological research for years. It is often done in terms of water quantity but it is also of interest in terms of water quality. Stream chemistry is a mix of solutes. They originate from various sources in the catchment, reach the stream by various flow pathways and are transformed by biogeochemical reactions at different locations. Therefore, we hypothesized that reaction of the stream chemistry to a rainfall event is not unique but varies according to the season (1), and the global meteorological conditions of the year (2). Identifying a typology of temporal chemical patterns of reaction to a rainfall event is a way to better understand catchment processes at the flood time scale. To answer this issue, we applied a probabilistic model (Latent Dirichlet Allocation or LDA (3)) mining recurrent sequential patterns to a dataset of floods. The dataset is 12 years long and daily recorded. It gathers a broad range of parameters from which we selected rainfall, discharge, water table depth, temperature as well as nitrate, dissolved organic carbon, sulphate and chloride concentrations. It comes from a long-term hydrological observatory (AgrHys, western France) located at Kervidy-Naizin. A set of 472 floods was automatically extracted (4). From each flood, a document has been generated that is made of a set of "hydrological words". Each hydrological word corresponds to a measurement: it is a triplet made of the considered variable, the time at which the measurement is made (relative to the beginning of the flood), and its magnitude (that can be low, medium or high). The documents are used as input data to the LDA algorithm. LDA relies on spotting co-occurrences (as an alternative to the more traditional study of correlation) between words that appear within the flood documents. It has two nice properties that are its ability to easily deal with missing data and its additive property that allows a document to be seen as a mixture

  1. Geospatial and temporal patterns of annual cholera outbreaks in Matlab, Bangladesh

    NASA Astrophysics Data System (ADS)

    Majumder, M. S.; de Klerk, K.; Meyers, D.

    2012-12-01

    Cholera is a waterborne diarrheal disease endemic to Bangladesh, resulting in 1 million diagnoses annually. Such disease burden results in incalculable lost wages and treatment expenses, taken from the pockets of an already impoverished society. Two seasonally correlated outbreaks of cholera occur in Bangladesh every year. In the spring and early summer, the Bay of Bengal - which serves as a natural reservoir for the cholera bacteria - flows inland, causing the first outbreak amongst coastal communities. Waste containing the cholera bacteria enters the sewage system and remains untreated due to poor water and sanitation infrastructure. Therefore, during the following monsoon season, flooding of cholera-contaminated sewage into drinking water sources results in a second outbreak. Though considered common knowledge among local populations, this geographic and temporal progression has not been empirically verified in the current literature. The aim of our ongoing study is to systematically analyze the seasonal trajectory of endemic cholera in Bangladesh. This paper discusses the results obtained from a comprehensive survey of available cholera data from the International Centre of Diarrheal Disease Research, Bangladesh (ICDDR,B) in Matlab, Bangladesh. Matlab thana is a near-coastal community that consists of 142 villages. Monsoon season takes place from June through October. Due to its proximity to the Meghna River, which opens into the Bay of Bengal, the area experiences significant flooding during these months. Using 10 years of geographically referenced cholera data, cases were plotted in time and space. Preliminary patterns suggest that villages closer to the Meghna River experience the majority of the area's cholera outbreaks and that case count is highest in late spring and late fall. April/May and November/December represent 25% and 23% of total annual case counts respectively. Moreover, villages further from the coastline demonstrate 57% higher relative

  2. Spatial and Temporal Pattern of Rift Valley Fever Outbreaks in Tanzania; 1930 to 2007

    PubMed Central

    Sindato, Calvin; Karimuribo, Esron D.; Pfeiffer, Dirk U.; Mboera, Leonard E. G.; Kivaria, Fredrick; Dautu, George; Bernard, Bett; Paweska, Janusz T.

    2014-01-01

    Background Rift Valley fever (RVF)-like disease was first reported in Tanzania more than eight decades ago and the last large outbreak of the disease occurred in 2006–07. This study investigates the spatial and temporal pattern of RVF outbreaks in Tanzania over the past 80 years in order to guide prevention and control strategies. Materials and Methods A retrospective study was carried out based on disease reporting data from Tanzania at district or village level. The data were sourced from the Ministries responsible for livestock and human health, Tanzania Meteorological Agency and research institutions involved in RVF surveillance and diagnosis. The spatial distribution of outbreaks was mapped using ArcGIS 10. The space-time permutation model was applied to identify clusters of cases, and a multivariable logistic regression model was used to identify risk factors associated with the occurrence of outbreaks in the district. Principal Findings RVF outbreaks were reported between December and June in 1930, 1947, 1957, 1960, 1963, 1968, 1977–79, 1989, 1997–98 and 2006–07 in 39.2% of the districts in Tanzania. There was statistically significant spatio-temporal clustering of outbreaks. RVF occurrence was associated with the eastern Rift Valley ecosystem (OR = 6.14, CI: 1.96, 19.28), total amount of rainfall of >405.4 mm (OR = 12.36, CI: 3.06, 49.88), soil texture (clay [OR = 8.76, CI: 2.52, 30.50], and loam [OR = 8.79, CI: 2.04, 37.82]). Conclusion/Significance RVF outbreaks were found to be distributed heterogeneously and transmission dynamics appeared to vary between areas. The sequence of outbreak waves, continuously cover more parts of the country. Whenever infection has been introduced into an area, it is likely to be involved in future outbreaks. The cases were more likely to be reported from the eastern Rift Valley than from the western Rift Valley ecosystem and from areas with clay and loam rather than sandy soil texture. PMID:24586433

  3. Spatial-temporal patterns in Mediterranean carnivore road casualties: Consequences for mitigation

    USGS Publications Warehouse

    Grilo, C.; Bissonette, J.A.; Santos-Reis, M.

    2009-01-01

    Many carnivores have been seriously impacted by the expansion of transportation systems and networks; however we know little about carnivore response to the extent and magnitude of road mortality, or which age classes may be disproportionately impacted. Recent research has demonstrated that wildlife-vehicle-collisions (WVC) involving carnivores are modulated by temporal and spatial factors. Thus, we investigated road mortality on a guild of small and medium-sized carnivores in southern Portugal using road-kill data obtained from a systematic 36 months monitoring period along highways (260 km) and national roads (314 km) by addressing the following questions: (a) which species and age class are most vulnerable to WVC? (b) are there temporal and/or spatial patterns in road-kill? and (c) which life-history and/or spatial factors influence the likelihood of collisions? We recorded a total of 806 carnivore casualties, which represented an average of 47 ind./100 km/year. Red fox and stone marten had the highest mortality rates. Our findings highlight three key messages: (1) the majority of road-killed individuals were adults of common species; (2) all carnivores, except genets, were more vulnerable during specific life-history phenological periods: higher casualties were observed when red fox and stone marten were provisioning young, Eurasian badger casualties occurred more frequently during dispersal, and higher Egyptian mongoose mortality occurred during the breeding period; and (3) modeling demonstrated that favorable habitat, curves in the road, and low human disturbance were major contributors to the deadliest road segments. Red fox carcasses were more likely to be found on road sections with passages distant from urban areas. Conversely, stone marten mortalities were found more often on national roads with high of cork oak woodland cover; Egyptian mongoose and genet road-kills were found more often on road segments close to curves. Based on our results, two key

  4. Hierarchical Bayesian modeling of spatio-temporal patterns of lung cancer incidence risk in Georgia, USA: 2000-2007

    NASA Astrophysics Data System (ADS)

    Yin, Ping; Mu, Lan; Madden, Marguerite; Vena, John E.

    2014-10-01

    Lung cancer is the second most commonly diagnosed cancer in both men and women in Georgia, USA. However, the spatio-temporal patterns of lung cancer risk in Georgia have not been fully studied. Hierarchical Bayesian models are used here to explore the spatio-temporal patterns of lung cancer incidence risk by race and gender in Georgia for the period of 2000-2007. With the census tract level as the spatial scale and the 2-year period aggregation as the temporal scale, we compare a total of seven Bayesian spatio-temporal models including two under a separate modeling framework and five under a joint modeling framework. One joint model outperforms others based on the deviance information criterion. Results show that the northwest region of Georgia has consistently high lung cancer incidence risk for all population groups during the study period. In addition, there are inverse relationships between the socioeconomic status and the lung cancer incidence risk among all Georgian population groups, and the relationships in males are stronger than those in females. By mapping more reliable variations in lung cancer incidence risk at a relatively fine spatio-temporal scale for different Georgian population groups, our study aims to better support healthcare performance assessment, etiological hypothesis generation, and health policy making.

  5. Age-related changes in trunk neuromuscular activation patterns during a controlled functional transfer task include amplitude and temporal synergies.

    PubMed

    Quirk, D Adam; Hubley-Kozey, Cheryl L

    2014-12-01

    While healthy aging is associated with physiological changes that can impair control of trunk motion, few studies examine how spinal muscle responses change with increasing age. This study examined whether older (over 65 years) compared to younger (20-45 years) adults had higher overall amplitude and altered temporal recruitment patterns of trunk musculature when performing a functional transfer task. Surface electromyograms from twelve bilateral trunk muscle (24) sites were analyzed using principal component analysis, extracting amplitude and temporal features (PCs) from electromyographic waveforms. Two PCs explained 96% of the waveform variance. Three factor ANOVA models tested main effects (group, muscle and reach) and interactions for PC scores. Significant (p<.0125) group interactions were found for all PC scores. Post hoc analysis revealed that relative to younger adults, older adults recruited higher agonist and antagonistic activity, demonstrated continuous activation levels in specific muscle sites despite changing external moments, and had altered temporal synergies within abdominal and back musculature. In summary both older and younger adults recruit highly organized activation patterns in response to changing external moments. Differences in temporal trunk musculature recruitment patterns suggest that older adults experience different dynamic spinal stiffness and loading compared to younger adults during a functional lifting task. PMID:25457424

  6. Soft computing analysis of the possible correlation between temporal and energy release patterns in seismic activity

    NASA Astrophysics Data System (ADS)

    Konstantaras, Anthony; Katsifarakis, Emmanouil; Artzouxaltzis, Xristos; Makris, John; Vallianatos, Filippos; Varley, Martin

    2010-05-01

    This paper is a preliminary investigation of the possible correlation of temporal and energy release patterns of seismic activity involving the preparation processes of consecutive sizeable seismic events [1,2]. The background idea is that during periods of low-level seismic activity, stress processes in the crust accumulate energy at the seismogenic area whilst larger seismic events act as a decongesting mechanism releasing considerable energy [3,4]. A dynamic algorithm is being developed aiming to identify and cluster pre- and post- seismic events to the main earthquake following on research carried out by Zubkov [5] and Dobrovolsky [6,7]. This clustering technique along with energy release equations dependent on Richter's scale [8,9] allow for an estimate to be drawn regarding the amount of the energy being released by the seismic sequence. The above approach is being implemented as a monitoring tool to investigate the behaviour of the underlying energy management system by introducing this information to various neural [10,11] and soft computing models [1,12,13,14]. The incorporation of intelligent systems aims towards the detection and simulation of the possible relationship between energy release patterns and time-intervals among consecutive sizeable earthquakes [1,15]. Anticipated successful training of the imported intelligent systems may result in a real-time, on-line processing methodology [1,16] capable to dynamically approximate the time-interval between the latest and the next forthcoming sizeable seismic event by monitoring the energy release process in a specific seismogenic area. Indexing terms: pattern recognition, long-term earthquake precursors, neural networks, soft computing, earthquake occurrence intervals References [1] Konstantaras A., Vallianatos F., Varley M.R. and Makris J. P.: ‘Soft computing modelling of seismicity in the southern Hellenic arc', IEEE Geoscience and Remote Sensing Letters, vol. 5 (3), pp. 323-327, 2008 [2] Eneva M. and

  7. Soft computing analysis of the possible correlation between temporal and energy release patterns in seismic activity

    NASA Astrophysics Data System (ADS)

    Konstantaras, Anthony; Katsifarakis, Emmanouil; Artzouxaltzis, Xristos; Makris, John; Vallianatos, Filippos; Varley, Martin

    2010-05-01

    This paper is a preliminary investigation of the possible correlation of temporal and energy release patterns of seismic activity involving the preparation processes of consecutive sizeable seismic events [1,2]. The background idea is that during periods of low-level seismic activity, stress processes in the crust accumulate energy at the seismogenic area whilst larger seismic events act as a decongesting mechanism releasing considerable energy [3,4]. A dynamic algorithm is being developed aiming to identify and cluster pre- and post- seismic events to the main earthquake following on research carried out by Zubkov [5] and Dobrovolsky [6,7]. This clustering technique along with energy release equations dependent on Richter's scale [8,9] allow for an estimate to be drawn regarding the amount of the energy being released by the seismic sequence. The above approach is being implemented as a monitoring tool to investigate the behaviour of the underlying energy management system by introducing this information to various neural [10,11] and soft computing models [1,12,13,14]. The incorporation of intelligent systems aims towards the detection and simulation of the possible relationship between energy release patterns and time-intervals among consecutive sizeable earthquakes [1,15]. Anticipated successful training of the imported intelligent systems may result in a real-time, on-line processing methodology [1,16] capable to dynamically approximate the time-interval between the latest and the next forthcoming sizeable seismic event by monitoring the energy release process in a specific seismogenic area. Indexing terms: pattern recognition, long-term earthquake precursors, neural networks, soft computing, earthquake occurrence intervals References [1] Konstantaras A., Vallianatos F., Varley M.R. and Makris J. P.: ‘Soft computing modelling of seismicity in the southern Hellenic arc', IEEE Geoscience and Remote Sensing Letters, vol. 5 (3), pp. 323-327, 2008 [2] Eneva M. and

  8. Spatio-Temporal Pattern and Socio-Economic Factors of Bacillary Dysentery at County Level in Sichuan Province, China.

    PubMed

    Ma, Yue; Zhang, Tao; Liu, Lei; Lv, Qiang; Yin, Fei

    2015-01-01

    Bacillary dysentery (BD) remains a big public health problem in China. Effective spatio-temporal monitoring of BD incidence is important for successful implementation of control and prevention measures. This study aimed to examine the spatio-temporal pattern of BD and analyze socio-economic factors that may affect BD incidence in Sichuan province, China. Firstly, we used space-time scan statistic to detect the high risk spatio-temporal clusters in each year. Then, bivariate spatial correlation and Bayesian spatio-temporal model were utilized to examine the associations between the socio-economic factors and BD incidence. Spatio-temporal clusters of BD were mainly located in the northern-southern belt of the midwest area of Sichuan province. The proportion of primary industry, the proportion of rural population and the rates of BD incidence show statistically significant positive correlation. The proportion of secondary industry, proportion of tertiary Industry, number of beds in hospitals per thousand persons, medical and technical personnel per thousand persons, per capital GDP and the rate of BD incidence show statistically significant negative correlation. The best fitting spatio-temporal model showed that medical and technical personnel per thousand persons and per capital GDP were significantly negative related to the risk of BD. PMID:26469274

  9. Spatio-Temporal Pattern and Socio-Economic Factors of Bacillary Dysentery at County Level in Sichuan Province, China

    PubMed Central

    Ma, Yue; Zhang, Tao; Liu, Lei; Lv, Qiang; Yin, Fei

    2015-01-01

    Bacillary dysentery (BD) remains a big public health problem in China. Effective spatio-temporal monitoring of BD incidence is important for successful implementation of control and prevention measures. This study aimed to examine the spatio-temporal pattern of BD and analyze socio-economic factors that may affect BD incidence in Sichuan province, China. Firstly, we used space-time scan statistic to detect the high risk spatio-temporal clusters in each year. Then, bivariate spatial correlation and Bayesian spatio-temporal model were utilized to examine the associations between the socio-economic factors and BD incidence. Spatio-temporal clusters of BD were mainly located in the northern-southern belt of the midwest area of Sichuan province. The proportion of primary industry, the proportion of rural population and the rates of BD incidence show statistically significant positive correlation. The proportion of secondary industry, proportion of tertiary Industry, number of beds in hospitals per thousand persons, medical and technical personnel per thousand persons, per capital GDP and the rate of BD incidence show statistically significant negative correlation. The best fitting spatio-temporal model showed that medical and technical personnel per thousand persons and per capital GDP were significantly negative related to the risk of BD. PMID:26469274

  10. The use of satellite data for monitoring temporal and spatial patterns of fire: a comprehensive review

    NASA Astrophysics Data System (ADS)

    Lasaponara, R.

    2009-04-01

    Remotely sensed (RS) data can fruitfully support both research activities and operative monitoring of fire at different temporal and spatial scales with a synoptic view and cost effective technologies. "The contribution of remote sensing (RS) to forest fires may be grouped in three categories, according to the three phases of fire management: (i) risk estimation (before fire), (ii) detection (during fire) and (iii) assessment (after fire)" Chuvieco (2006). Relating each phase, wide research activities have been conducted over the years. (i) Risk estimation (before fire) has been mainly based on the use of RS data for (i) monitoring vegetation stress and assessing variations in vegetation moisture content, (ii) fuel type mapping, at different temporal and spatial scales from global, regional down to a local scale (using AVHRR, MODIS, TM, ASTER, Quickbird images and airborne hyperspectral and LIDAR data). Danger estimation has been mainly based on the use of AVHRR (onborad NOAA), MODIS (onboard TERRA and AQUA), VEGETATION (onboard SPOT) due to the technical characteristics (i.e. spectral, spatial and temporal resolution). Nevertheless microwave data have been also used for vegetation monitoring. (ii) Detection: identification of active fires, estimation of fire radiative energy and fire emission. AVHRR was one of the first satellite sensors used for setting up fire detection algorithms. The availbility of MODIS allowed us to obtain global fire products free downloaded from NASA web site. Sensors onboard geostationary satellite platforms, such as GOES, SEVIRI, have been used for fire detection, to obtain a high temporal resolution (at around 15 minutes) monitoring of active fires. (iii) Post fire damage assessment includes: burnt area mapping, fire emission, fire severity, vegetation recovery, fire resilience estimation, and, more recently, fire regime characterization. Chuvieco E. L. Giglio, C. Justice, 2008 Global charactrerization of fire activity: toward defining

  11. Using Conditional Analysis to Investigate Spatial and Temporal patterns in Upland Rainfall

    NASA Astrophysics Data System (ADS)

    Sakamoto Ferranti, Emma Jayne; Whyatt, James Duncan; Timmis, Roger James

    2010-05-01

    The seasonality and characteristics of rainfall in the UK are altering under a changing climate. Summer rainfall is generally decreasing whereas winter rainfall is increasing, particularly in northern and western areas (Maraun et al., 2008) and recent research suggests these rainfall increases are amplified in upland areas (Burt and Ferranti, 2010). Conditional analysis has been used to investigate these rainfall patterns in Cumbria, an upland area in northwest England. Cumbria was selected as an example of a topographically diverse mid-latitude region that has a predominately maritime and westerly-defined climate. Moreover it has a dense network of more than 400 rain gauges that have operated for periods between 1900 and present day. Cumbria has experienced unprecedented flooding in the past decade and understanding the spatial and temporal changes in this and other upland regions is important for water resource and ecosystem management. The conditional analysis method examines the spatial and temporal variations in rainfall under different synoptic conditions and in different geographic sub-regions (Ferranti et al., 2009). A daily synoptic typing scheme, the Lamb Weather Catalogue, was applied to classify rainfall into different weather types, for example: south-westerly, westerly, easterly or cyclonic. Topographic descriptors developed using GIS were used to classify rain gauges into 6 directionally-dependant geographic sub-regions: coastal, windward-lowland, windward-upland, leeward-upland, leeward-lowland, secondary upland. Combining these classification methods enabled seasonal rainfall climatologies to be produced for specific weather types and sub-regions. Winter rainfall climatologies were constructed for all 6 sub-regions for 3 weather types - south-westerly (SW), westerly (W), and cyclonic (C); these weather types contribute more than 50% of total winter rainfall. The frequency of wet-days (>0.3mm), the total winter rainfall and the average wet day

  12. Spatial and Temporal Patterns of Global NDVI Trends: Correlations with Climate and Human Factors

    NASA Astrophysics Data System (ADS)

    LIU, Y.; Li, S.

    2015-12-01

    Abstract: Changes in vegetation activity are driven by multiple natural and anthropogenic factors, which can be reflected by Normalized Difference Vegetation Index (NDVI) derived from satellite. In this paper, NDVI trends from 1982 to 2012 are first estimated by the Theil-Sen median slope method to explore their spatial and temporal patterns. Then the impact of climate variables and human activity on the observed NDVI trends is analyzed. Our results show on average NDVI increased by 0.46×10-3 per year from 1982 to 2012 globally with decadal variations. For most regions of the world, a greening (increasing) - browning(decreasing) - greening (G-B-G) trend is observed over the periods 1982-2004, 1995-2004, and 2005-2012, respectively. A positive partial correlation of NDVI and temperature is observed in the first period but it decreases and occasionally becomes negative in the following periods, especially in the Humid Temperate and Dry Domain Regions. This suggests a weakened effect of temperature on vegetation growth. Precipitation, on the other hand, is found to have a positive impact on the NDVI trend. This effect becomes stronger in the third period of 1995-2004, especially in the Dry Domain Region. Anthropogenic effects and human activities, derived here from the Human Footprint Dataset and the associated Human Influence Index (HII), have varied impacts on the magnitude (absolute value) of the NDVI trends across continents. Significant positive effects are found in Asia, Africa, and Europe, suggesting that intensive human activity could accelerate the change in NDVI and vegetation. A more accurate attribution of vegetation change to specific climatic and anthropogenic factors is instrumental to understand vegetation dynamics and requires further research.

  13. Temporal patterns of nitrogen leakage from mid-Appalachian forested watersheds: Role of insect defoliation

    NASA Astrophysics Data System (ADS)

    Eshleman, Keith N.; Morgan, Raymond P.; Webb, James R.; Deviney, Frank A.; Galloway, James N.

    1998-08-01

    Fluxes of dissolved nitrogen (N) as nitrate from forested watersheds in the mid-Appalachian region have important water quality ramifications for small acid-sensitive streams and for downstream receiving waters such as the Chesapeake Bay. Previous studies of N leakage have suggested that annual dissolved N fluxes from small watersheds can vary by several orders of magnitude and may be increasing as second-growth forests gradually become N saturated from the accrual of atmospheric N loadings. In this study, we examined the temporal (intra-annual and interannual) variability in dissolved nitrate fluxes from five small (area < 15 km2) forested watersheds in the mid-Appalachian region from 1988 to 1995. At all sites, nitrate concentrations were observed to increase dramatically during storm flow events, with nitric acid contributing significantly to depressions in pH and acid-neutralizing capacity; annual nitrate fluxes were dominated by high-discharge periods. Interannually, the fluxes at each site varied by 1-2 orders of magnitude, but the patterns of N leakage displayed considerable synchrony with outbreaks of gypsy moth caterpillar defoliation that began in the late 1980s and early 1990s in this region. N leakage from forested watersheds apparently lagged the initial defoliation by several months to perhaps a year or more. Defoliation outbreaks by the gypsy moth caterpillar (or other herbivorous pests) thus provide an alternative explanation of N leakage from forest ecosystems. Poorly documented insect defoliations, rather than premature N saturation of intact forest ecosystems, need to be considered as a possible explanation of N leakage from forested watersheds in the mid-Appalachian region and elsewhere.

  14. Spatial and Temporal Patterns of Soil Organic Carbon in Mangrove Forest Ecosystems (Invited)

    NASA Astrophysics Data System (ADS)

    McKee, K. L.

    2010-12-01

    Wetlands are recognized as potentially important carbon sinks, but few studies have focused on tropical and sub-tropical systems that accumulate organic carbon. Soil organic carbon (SOC) density was analyzed in multiple mangrove forests, representing 30 geographic locations and six forest types (total of 230 study plots overall). SOC density varied from 0.002 to 0.1 g cm-3, with an overall average of 0.019 and 0.058 g cm-3 in mineral and organic soils, respectively. Sites spanned a latitudinal range from 37° S to 29° N, and carbon density was correlated with average annual temperature. However, high variation in SOC density within latitude indicated additional influences. At a regional scale, SOC density varied with forest type and generally increased with hydrologic energy. At a site in Panama, SOC density varied spatially with soil pore space, which influenced bulk density and soil temperature—indicating an influence of compaction and/or degree of decomposition. Carbon sequestration rates estimated from surface accretion of organic C were similar in organic (216 g C m-2 yr-1) and mineral (145 g C m-2 yr-1) soil types, but varied across geographic locations (41 to 591 g C m-2 yr-1). Subsurface inputs of carbon, which were estimated using measured rates of root matter accumulation and root carbon content, averaged 121 g m-2 yr-1, but exceeded 400 g m-2 yr-1 at several sites. Depths of mangrove peat varied across sites from < 1 m to over 10 m, indicating the potentially large carbon stores that can develop under certain conditions. Rates of carbon accretion at a site in Belize have varied from 90 to 300 g C m-2 yr-1 over 8000 yr. These patterns indicate spatial and temporal variability in SOC and suggest multiple controls on rates of carbon accumulation in mangrove ecosystems.

  15. Long-period seismic events with strikingly regular temporal patterns on Katla volcano's south flank (Iceland)

    NASA Astrophysics Data System (ADS)

    Sgattoni, Giulia; Jeddi, Zeinab; Gudmundsson, Ólafur; Einarsson, Páll; Tryggvason, Ari; Lund, Björn; Lucchi, Federico

    2016-09-01

    Katla is a threatening volcano in Iceland, partly covered by the Mýrdalsjökull ice cap. The volcano has a large caldera with several active geothermal areas. A peculiar cluster of long-period seismic events started on Katla's south flank in July 2011, during an unrest episode in the caldera that culminated in a glacier outburst. The seismic events were tightly clustered at shallow depth in the Gvendarfell area, 4 km south of the caldera, under a small glacier stream at the southern margin of Mýrdalsjökull. No seismic events were known to have occurred in this area before. The most striking feature of this seismic cluster is its temporal pattern, characterized by regular intervals between repeating seismic events, modulated by a seasonal variation. Remarkable is also the stability of both the time and waveform features over a long time period, around 3.5 years. We have not found any comparable examples in the literature. Both volcanic and glacial processes can produce similar waveforms and therefore have to be considered as potential seismic sources. Discerning between these two causes is critical for monitoring glacier-clad volcanoes and has been controversial at Katla. For this new seismic cluster on the south flank, we regard volcano-related processes as more likely than glacial ones for the following reasons: 1) the seismic activity started during an unrest episode involving sudden melting of the glacier and a jökulhlaup; 2) the glacier stream is small and stagnant; 3) the seismicity remains regular and stable for years; 4) there is no apparent correlation with short-term weather changes, such as rainstorms. We suggest that a small, shallow hydrothermal system was activated on Katla's south flank in 2011, either by a minor magmatic injection or by changes of permeability in a local crack system.

  16. Systematic temporal patterns in the relationship between housing development and forest bird biodiversity.

    PubMed

    Pidgeon, Anna M; Flather, Curtis H; Radeloff, Volker C; Lepczyk, Christopher A; Keuler, Nicholas S; Wood, Eric M; Stewart, Susan I; Hammer, Roger B

    2014-10-01

    As people encroach increasingly on natural areas, one question is how this affects avian biodiversity. The answer to this is partly scale-dependent. At broad scales, human populations and biodiversity concentrate in the same areas and are positively associated, but at local scales people and biodiversity are negatively associated with biodiversity. We investigated whether there is also a systematic temporal trend in the relationship between bird biodiversity and housing development. We used linear regression to examine associations between forest bird species richness and housing growth in the conterminous United States over 30 years. Our data sources were the North American Breeding Bird Survey and the 2000 decennial U.S. Census. In the 9 largest forested ecoregions, housing density increased continually over time. Across the conterminous United States, the association between bird species richness and housing density was positive for virtually all guilds except ground nesting birds. We found a systematic trajectory of declining bird species richness as housing increased through time. In more recently developed ecoregions, where housing density was still low, the association with bird species richness was neutral or positive. In ecoregions that were developed earlier and where housing density was highest, the association of housing density with bird species richness for most guilds was negative and grew stronger with advancing decades. We propose that in general the relationship between human settlement and biodiversity over time unfolds as a 2-phase process. The first phase is apparently innocuous; associations are positive due to coincidence of low-density housing with high biodiversity. The second phase is highly detrimental to biodiversity, and increases in housing density are associated with biodiversity losses. The long-term effect on biodiversity depends on the final housing density. This general pattern can help unify our understanding of the relationship

  17. Temporal and spatial paleoproductivity patterns associated with Eastern Mediterranean sapropels: paleoceanographic significance.

    NASA Astrophysics Data System (ADS)

    Gallego-Torres, D.; Martinez-Ruiz, F.; Meyers, P. A.; Paytan, A.; Jimenez-Espejo, F. J.; Ortega-Huertas, M.

    2007-12-01

    Deposition of Eastern Mediterranean sapropels has been discussed in terms of enhanced primary productivity and/or preferential preservation due to anoxic conditions in the deep basin. However, formation of these organic enriched layers is not homogeneous across the basin and through time, and temporal and spatial patterns can be observed in organic carbon concentrations and depositional conditions. We used a transect of ODP sites in the Eastern Mediterranean for the study of such variations, covering the area of major influence of the European continent and incoming waters from the Western Mediterranean basin (Ionian basin, Site 964), a region of influence of the Nile River (Levantine basin, Site 967), the central region of the basin with minor continental influence (Mediterranean Ridge, Site 969), and shallower bathymetries (Eratosthenes Seamount, Site 966). A set of paleoproductivity related proxies has been applied in order to reconstruct the paleoceanographic conditions that led to the formation of sapropels. As a whole, sapropel formation corresponds to wetter periods occurring during precessional minima and appears associated to increased productivity, evidenced by Ba/Al, and TOC-Ba mass accumulation rates maxima. δ13C data indicate intensified carbon fixation during organic carbon entrapment in sediment, where as low δ15N values provide evidence of nitrogen fixation through cyanobacteria activity as a source of increased primary and export productivity. This overwhelming export productivity led to the depletion of deep water dissolved oxygen, thus improving organic matter preservation. The above mentioned proxies show that sapropels represent periods of high productivity in an otherwise oligotrophic basin. This productivity was initiated and sustained by a change in bacterial community to nitrogen-fixing organism favored by intensified continental drainage and nutrient input. In agreement to this observation, sapropel onset generally occurred earlier in

  18. Spatial-Temporal Patterns of Viral Amplification and Interference Initiated by a Single Infected Cell

    PubMed Central

    Akpinar, Fulya; Inankur, Bahar

    2016-01-01

    ABSTRACT When viruses infect their host cells, they can make defective virus-like particles along with intact virus. Cells coinfected with virus and defective particles often exhibit interference with virus growth caused by the competition for resources by defective genomes. Recent reports of the coexistence and cotransmission of such defective interfering particles (DIPs) in vivo, across epidemiological length and time scales, suggest a role in viral pathogenesis, but it is not known how DIPs impact infection spread, even under controlled culture conditions. Using fluorescence microscopy, we quantified coinfections of vesicular stomatitis virus (VSV) expressing a fluorescent reporter protein and its DIPs on BHK-21 host cell monolayers. We found that viral gene expression was more delayed, infections spread more slowly, and patterns of spread became more “patchy” with higher DIP inputs to the initial cell. To examine how infection spread might depend on the behavior of the initial coinfected cell, we built a computational model, adapting a cellular automaton (CA) approach to incorporate kinetic data on virus growth for the first time. Specifically, changes in observed patterns of infection spread could be directly linked to previous high-throughput single-cell measures of virus-DIP coinfection. The CA model also provided testable hypotheses on the spatial-temporal distribution of the DIPs, which remain governed by their predator-prey interaction. More generally, this work offers a data-driven computational modeling approach for better understanding of how single infected cells impact the multiround spread of virus infections across cell populations. IMPORTANCE Defective interfering particles (DIPs) compete with intact virus, depleting host cell resources that are essential for virus growth and infection spread. However, it is not known how such competition, strong or weak, ultimately affects the way in which infections spread and cause disease. In this study

  19. A generic regional spatio-temporal co-occurrence pattern mining model: a case study for air pollution

    NASA Astrophysics Data System (ADS)

    Akbari, Mohammad; Samadzadegan, Farhad; Weibel, Robert

    2015-07-01

    Spatio-temporal co-occurrence patterns represent subsets of object types which are located together in both space and time. Existing algorithms for co-occurrence pattern mining cannot handle complex applications such as air pollution in several ways. First, the existing models assume that spatial relationships between objects are explicitly represented in the input data, while the new method allows extracting implicitly contained spatial relationships algorithmically. Second, instead of extracting co-occurrence patterns of only point data, the proposed method deals with different feature types that is with point, line and polygon data. Thus, it becomes relevant for a wider range of real applications. Third, it also allows mining a spatio-temporal co-occurrence pattern simultaneously in space and time so that it illustrates the evolution of patterns over space and time. Furthermore, the proposed algorithm uses a Voronoi tessellation to improve efficiency. To evaluate the proposed method, it was applied on a real case study for air pollution where the objective is to find correspondences of air pollution with other parameters which affect this phenomenon. The results of evaluation confirm not only the capability of this method for co-occurrence pattern mining of complex applications, but also it exhibits an efficient computational performance.

  20. The acoustic salience of prosody trumps infants' acquired knowledge of language-specific prosodic patterns

    PubMed Central

    Hawthorne, Kara; Mazuka, Reiko; Gerken, LouAnn

    2015-01-01

    There is mounting evidence that prosody facilitates grouping the speech stream into syntactically-relevant units (e.g., Hawthorne & Gerken, 2014; Soderstrom, Kemler Nelson, & Jusczyk, 2005). We ask whether prosody's role in syntax acquisition relates to its general acoustic salience or to the learner's acquired knowledge of correlations between prosody and syntax in her native language. English- and Japanese-acquiring 19-month-olds listened to sentences from an artificial grammar with non-native prosody (Japanese or English, respectively), then were tested on their ability to recognize prosodically-marked constituents when the constituents had moved to a new position in the sentence. Both groups were able to use non-native prosody to parse speech into cohesive, reorderable, syntactic constituent-like units. Comparison with Hawthorne & Gerken (2014), in which English-acquiring infants were tested on sentences with English prosody, suggests that 19-month-olds are equally adept at using native and non-native prosody for at least some types of learning tasks and, therefore, that prosody is useful in early syntactic segmentation because of its acoustic salience. PMID:25870497

  1. Temporal Variability and Stability in Infant-Directed Sung Speech: Evidence for Language-Specific Patterns

    ERIC Educational Resources Information Center

    Falk, Simone

    2011-01-01

    In this paper, sung speech is used as a methodological tool to explore temporal variability in the timing of word-internal consonants and vowels. It is hypothesized that temporal variability/stability becomes clearer under the varying rhythmical conditions induced by song. This is explored cross-linguistically in German--a language that exhibits a…

  2. Temporal stability of estimated soil water flux patterns across agricultural fields

    Technology Transfer Automated Retrieval System (TEKTRAN)

    When a field or a small watershed is repeatedly surveyed for soil water content, sites often can be spotted where soil is consistently wetter or consistently dryer than average across the study area. This phenomenon has been called time stability, temporal stability, temporal persistence, or rank st...

  3. Spatio-temporal patterns of schistosomiasis japonica in lake and marshland areas in China: the effect of snail habitats.

    PubMed

    Hu, Yi; Gao, Jie; Chi, Meina; Luo, Can; Lynn, Henry; Sun, Liqian; Tao, Bo; Wang, Decheng; Zhang, Zhijie; Jiang, Qingwu

    2014-09-01

    The progress of the integrated control policy for schistosomiasis implemented since 2005 in China, which is aiming at reducing the roles of bovines and humans as infection sources, may be challenged by persistent presence of infected snails in lake and marshland areas. Based on annual parasitologic data for schistosomiasis during 2004-2011 in Xingzi County, a spatio-temporal kriging model was used to investigate the spatio-temporal pattern of schistosomiasis risk. Results showed that environmental factors related to snail habitats can explain the spatio-temporal variation of schistosomiasis. Predictive maps of schistosomiasis risk illustrated that clusters of the disease fluctuated during 2004-2008; there was an extensive outbreak in 2008 and attenuated disease occurrences afterwards. An area with an annually constant cluster of schistosomiasis was identified. Our study suggests that targeting snail habitats located within high-risk areas for schistosomiasis would be an economic and sustainable way of schistosomiasis control in the future. PMID:24980498

  4. Spatio-Temporal Patterns of Schistosomiasis Japonica in Lake and Marshland Areas in China: The Effect of Snail Habitats

    PubMed Central

    Hu, Yi; Gao, Jie; Chi, Meina; Luo, Can; Lynn, Henry; Sun, Liqian; Tao, Bo; Wang, Decheng; Zhang, Zhijie; Jiang, Qingwu

    2014-01-01

    The progress of the integrated control policy for schistosomiasis implemented since 2005 in China, which is aiming at reducing the roles of bovines and humans as infection sources, may be challenged by persistent presence of infected snails in lake and marshland areas. Based on annual parasitologic data for schistosomiasis during 2004–2011 in Xingzi County, a spatio-temporal kriging model was used to investigate the spatio-temporal pattern of schistosomiasis risk. Results showed that environmental factors related to snail habitats can explain the spatio-temporal variation of schistosomiasis. Predictive maps of schistosomiasis risk illustrated that clusters of the disease fluctuated during 2004–2008; there was an extensive outbreak in 2008 and attenuated disease occurrences afterwards. An area with an annually constant cluster of schistosomiasis was identified. Our study suggests that targeting snail habitats located within high-risk areas for schistosomiasis would be an economic and sustainable way of schistosomiasis control in the future. PMID:24980498

  5. Application of pattern recognition techniques to the identification of aerospace acoustic sources

    NASA Technical Reports Server (NTRS)

    Fuller, Chris R.; Obrien, Walter F.; Cabell, Randolph H.

    1988-01-01

    A pattern recognition system was developed that successfully recognizes simulated spectra of five different types of transportation noise sources. The system generates hyperplanes during a training stage to separate the classes and correctly classify unknown patterns in classification mode. A feature selector in the system reduces a large number of features to a smaller optimal set, maximizing performance and minimizing computation.

  6. Microbial respiration and root respiration follow divergent seasonal and diel temporal patterns in a temperate forest

    NASA Astrophysics Data System (ADS)

    Davidson, E. A.; Savage, K. E.; Tang, J.

    2010-12-01

    Soil respiration is often related to empirical measurements of soil temperature and water content, as if it were a single process that responds uniformly to these environmental drivers. However, we know that root and microbial processes both contribute to CO2 production within the soil, and the roots are connected to aboveground plant tissues, which may, in turn, be responding to other environmental cues. Trenched plots provide a method to separate these two processes, where only microbial respiration (Rm) occurs in the trenched plots that have had roots excluded, total soil respiration (Rt) occurs in untrenched reference plots, and root respiration (Rr) is inferred by the difference between the two treatments. Like all methods, this one has potential artifacts that may render the quantification of Rr uncertain, but the method is likely to demonstrate the phenology of Rr and its impact on diel and seasonal temporal patterns of Rt. We deployed three automated soil respiration chambers in both control and trenched plots at the Harvard Forest in central Massachusetts. Soil CO2 efflux was measured every half hour for each chamber from day-of-year 112 to 304, 2009 (with some data gaps in the intervening period due to equipment failure). For the combined measurement period, mean daily soil respiration and mean daily flux amplitude were significantly higher in the reference plots compared to the trenched plots. The peak flux also occurred about 2 hours later in the evening in the reference plots compared to the trenched plots. Breaking this period down into four seasonal windows (spring, early summer, late summer, and autumn), the mean daily flux was significantly higher in the reference plot for all seasons, the higher daily amplitude was significant only during the early summer, and the delay in peak emissions was significant during early and late summer. While roots were contributing to soil respiration in all measurement periods, their largest effect on daily mean

  7. Spatio-temporal patterns in land use and management affecting surface runoff response of agricultural catchments—A review

    NASA Astrophysics Data System (ADS)

    Fiener, P.; Auerswald, K.; Van Oost, K.

    2011-05-01

    Surface runoff and associated erosion processes adversely affect soil and surface water quality. There is increasing evidence that a sound understanding of spatial-temporal dynamics of land use and management are crucial to understanding surface runoff processes and underpinning mitigation strategies. In this review, we synthesise the effects of (1) temporal patterns of land management of individual fields, and (2) spatio-temporal interaction of several fields within catchments by applying semivariance analysis, which allows the extent and range of the different patterns to be compared. Consistent effects of management on the temporal dynamics of surface runoff of individual fields can be identified, some of which have been incorporated into small-scale hydrological models. In contrast, the effects of patchiness, the spatial organisation of patches with different soil hydrological properties, and the effects of linear landscape structures are less well understood and are rarely incorporated in models. The main challenge for quantifying these effects arises from temporal changes within individual patches, where the largest contrasts usually occur in mid-summer and cause a seasonally varying effect of patchiness on the overall catchment response. Some studies indicate that increasing agricultural patchiness, due to decreasing field sizes, reduces the catchment-scale response to rainfall, especially in cases of Hortonian runoff. Linear structures associated with patchiness of fields (e.g. field borders, ditches, and ephemeral gullies) may either increase or decrease the hydraulic connectivity within a catchment. The largest gap in research relates to the effects and temporal variation of patch interaction, the influence of the spatial organisation of patches and the interaction with linear structures. In view of the substantial changes in the structure of agricultural landscapes occurring throughout the world, it is necessary to improve our knowledge of the influence

  8. Using Conditional Analysis to Investigate Spatial and Temporal patterns in Upland Rainfall

    NASA Astrophysics Data System (ADS)

    Sakamoto Ferranti, Emma Jayne; Whyatt, James Duncan; Timmis, Roger James

    2010-05-01

    The seasonality and characteristics of rainfall in the UK are altering under a changing climate. Summer rainfall is generally decreasing whereas winter rainfall is increasing, particularly in northern and western areas (Maraun et al., 2008) and recent research suggests these rainfall increases are amplified in upland areas (Burt and Ferranti, 2010). Conditional analysis has been used to investigate these rainfall patterns in Cumbria, an upland area in northwest England. Cumbria was selected as an example of a topographically diverse mid-latitude region that has a predominately maritime and westerly-defined climate. Moreover it has a dense network of more than 400 rain gauges that have operated for periods between 1900 and present day. Cumbria has experienced unprecedented flooding in the past decade and understanding the spatial and temporal changes in this and other upland regions is important for water resource and ecosystem management. The conditional analysis method examines the spatial and temporal variations in rainfall under different synoptic conditions and in different geographic sub-regions (Ferranti et al., 2009). A daily synoptic typing scheme, the Lamb Weather Catalogue, was applied to classify rainfall into different weather types, for example: south-westerly, westerly, easterly or cyclonic. Topographic descriptors developed using GIS were used to classify rain gauges into 6 directionally-dependant geographic sub-regions: coastal, windward-lowland, windward-upland, leeward-upland, leeward-lowland, secondary upland. Combining these classification methods enabled seasonal rainfall climatologies to be produced for specific weather types and sub-regions. Winter rainfall climatologies were constructed for all 6 sub-regions for 3 weather types - south-westerly (SW), westerly (W), and cyclonic (C); these weather types contribute more than 50% of total winter rainfall. The frequency of wet-days (>0.3mm), the total winter rainfall and the average wet day

  9. Temporal patterns and selectivity in the unitary responses of olfactory receptors in the tiger salamander to odor stimulation.

    PubMed

    Baylin, F

    1979-07-01

    Temporal patterns and selectivity in unitary responses of 100 single olfactory receptors in the tiger salamander to odor stimulation were investigated. An olfactometer which permitted control of stimulus concentration, duration, and flow rate was calibrated with a gas chromatograph. Stimulus pulses were monitored by recording the electroolfactogram from the surface of the olfactory epithelium. Both diphasic and triphasic spikes were recorded extracellularly. No discernible differences in types of responses, reproducibility of responses, and cross-unit distribution of spontaneous rates distinguished diphasic from triphasic units. The cross-unit selectivity in responses to the seven olfactory stimulants used and the range of odorant concentrations which effectively evoked these responses suggest variations in types and number of types of receptive sites on each cell. Temporal patterns in the unitary responses were generally less complex than those observed in the olfactory bulb. Phasic stimulations evoked phasic patterns. Tonic stimulations evoked phasic/tonic patterns. Occasionally poststimulus depressions or elevations in firing rates were observed. The nature of these patterns varied somewhat with odorant concentration for a particular unit. PMID:479819

  10. Associative-memory representations emerge as shared spatial patterns of theta activity spanning the primate temporal cortex.

    PubMed

    Nakahara, Kiyoshi; Adachi, Ken; Kawasaki, Keisuke; Matsuo, Takeshi; Sawahata, Hirohito; Majima, Kei; Takeda, Masaki; Sugiyama, Sayaka; Nakata, Ryota; Iijima, Atsuhiko; Tanigawa, Hisashi; Suzuki, Takafumi; Kamitani, Yukiyasu; Hasegawa, Isao

    2016-01-01

    Highly localized neuronal spikes in primate temporal cortex can encode associative memory; however, whether memory formation involves area-wide reorganization of ensemble activity, which often accompanies rhythmicity, or just local microcircuit-level plasticity, remains elusive. Using high-density electrocorticography, we capture local-field potentials spanning the monkey temporal lobes, and show that the visual pair-association (PA) memory is encoded in spatial patterns of theta activity in areas TE, 36, and, partially, in the parahippocampal cortex, but not in the entorhinal cortex. The theta patterns elicited by learned paired associates are distinct between pairs, but similar within pairs. This pattern similarity, emerging through novel PA learning, allows a machine-learning decoder trained on theta patterns elicited by a particular visual item to correctly predict the identity of those elicited by its paired associate. Our results suggest that the formation and sharing of widespread cortical theta patterns via learning-induced reorganization are involved in the mechanisms of associative memory representation. PMID:27282247

  11. Associative-memory representations emerge as shared spatial patterns of theta activity spanning the primate temporal cortex

    PubMed Central

    Nakahara, Kiyoshi; Adachi, Ken; Kawasaki, Keisuke; Matsuo, Takeshi; Sawahata, Hirohito; Majima, Kei; Takeda, Masaki; Sugiyama, Sayaka; Nakata, Ryota; Iijima, Atsuhiko; Tanigawa, Hisashi; Suzuki, Takafumi; Kamitani, Yukiyasu; Hasegawa, Isao

    2016-01-01

    Highly localized neuronal spikes in primate temporal cortex can encode associative memory; however, whether memory formation involves area-wide reorganization of ensemble activity, which often accompanies rhythmicity, or just local microcircuit-level plasticity, remains elusive. Using high-density electrocorticography, we capture local-field potentials spanning the monkey temporal lobes, and show that the visual pair-association (PA) memory is encoded in spatial patterns of theta activity in areas TE, 36, and, partially, in the parahippocampal cortex, but not in the entorhinal cortex. The theta patterns elicited by learned paired associates are distinct between pairs, but similar within pairs. This pattern similarity, emerging through novel PA learning, allows a machine-learning decoder trained on theta patterns elicited by a particular visual item to correctly predict the identity of those elicited by its paired associate. Our results suggest that the formation and sharing of widespread cortical theta patterns via learning-induced reorganization are involved in the mechanisms of associative memory representation. PMID:27282247

  12. Depth Depending Pattern Recognition (DDPR) - a tool for visualization of spatial and temporal similarities of properties in sediment cores

    NASA Astrophysics Data System (ADS)

    Büttner, Olaf; Baborowski, Martina

    2013-04-01

    Depth Depending Pattern Recognition (DDPR) is a new simple tool for the visualization of spatial and temporal similarities of measured parameters in a set of sediment cores. It was developed to support the multivariate analysis of data of sediment cores taken in a still water area of the River Elbe [1]. The idea behind is the assumption that correlations in spatial or temporal distributions of environmental parameters can be visualized by different ways and that a distance between two patterns can be defined with mathematical methods. So the similarity of two patterns can be quantified and assessed by a catalog of subjective rules. Generally, defining one reference pattern, the computation of a distance matrix for different parameter distributions is easily possible. Consequently, the three main steps of the algorithm are a) the creation of the pattern from the measurements, b) the definition of the distance calculation and c) the interpretation and assessment of the distance matrix. The method can be used in addition to classical uni- or multivariate statistical methods like regression analysis, principal component analysis, correlation analysis etc. DDPR supports hypothesis testing and explanation of relationships. In the poster DDPR is explained and the method is presented for two examples, an artificial one and one with data from sediment cores. Reference [1] Baborowski M., Büttner O., Morgenstern P., Jancke T., Westrich B. (2012) Spatial variability of metal pollution in groyne fields of the Middle Elbe - Implications for sediment monitoring, Environmental Pollution, 167,115-123

  13. Understanding spatio-temporal mobility patterns for seniors, child/student and adult using smart card data

    NASA Astrophysics Data System (ADS)

    Huang, X.; Tan, J.

    2014-11-01

    Commutes in urban areas create interesting travel patterns that are often stored in regional transportation databases. These patterns can vary based on the day of the week, the time of the day, and commuter type. This study proposes methods to detect underlying spatio-temporal variability among three groups of commuters (senior citizens, child/students, and adults) using data mining and spatial analytics. Data from over 36 million individual trip records collected over one week (March 2012) on the Singapore bus and Mass Rapid Transit (MRT) system by the fare collection system were used. Analyses of such data are important for transportation and landuse designers and contribute to a better understanding of urban dynamics. Specifically, descriptive statistics, network analysis, and spatial analysis methods are presented. Descriptive variables were proposed such as density and duration to detect temporal features of people. A directed weighted graph G ≡ (N , L, W) was defined to analyze the global network properties of every pair of the transportation link in the city during an average workday for all three categories. Besides, spatial interpolation and spatial statistic tools were used to transform the discrete network nodes into structured human movement landscape to understand the role of transportation systems in urban areas. The travel behaviour of the three categories follows a certain degree of temporal and spatial universality but also displays unique patterns within their own specialties. Each category is characterized by their different peak hours, commute distances, and specific locations for travel on weekdays.

  14. Spatio-temporal Patterns and Landscape-Associated Risk of Buruli Ulcer in Akonolinga, Cameroon

    PubMed Central

    Landier, Jordi; Gaudart, Jean; Carolan, Kevin; Lo Seen, Danny; Guégan, Jean-François; Eyangoh, Sara; Fontanet, Arnaud; Texier, Gaëtan

    2014-01-01

    Background Buruli ulcer (BU) is an extensively damaging skin infection caused by Mycobacterium ulcerans, whose transmission mode is still unknown. The focal distribution of BU and the absence of interpersonal transmission suggest a major role of environmental factors, which remain unidentified. This study provides the first description of the spatio-temporal variations of BU in an endemic African region, in Akonolinga, Cameroon. We quantify landscape-associated risk of BU, and reveal local patterns of endemicity. Methodology/Principal Findings From January 2002 to May 2012, 787 new BU cases were recorded in 154 villages of the district of Akonolinga. Incidence per village ranged from 0 (n = 59 villages) to 10.4 cases/1000 person.years (py); median incidence was 0.4 cases/1,000py. Villages neighbouring the Nyong River flood plain near Akonolinga town were identified as the highest risk zone using the SPODT algorithm. We found a decreasing risk with increasing distance to the Nyong and identified 4 time phases with changes in spatial distribution. We classified the villages into 8 groups according to landscape characteristics using principal component analysis and hierarchical clustering. We estimated the incidence ratio (IR) associated with each landscape using a generalised linear model. BU risk was highest in landscapes with abundant wetlands, especially cultivated ones (IR = 15.7, 95% confidence interval [95%CI] = 15.7[4.2–59.2]), and lowest in reference landscape where primary and secondary forest cover was abundant. In intermediate-risk landscapes, risk decreased with agriculture pressure (from IR[95%CI] = 7.9[2.2–28.8] to 2.0[0.6–6.6]). We identified landscapes where endemicity was stable and landscapes where incidence increased with time. Conclusion/Significance Our study on the largest series of BU cases recorded in a single endemic region illustrates the local evolution of BU and identifies the Nyong River as the major driver of BU

  15. Spatio-Temporal Patterns of Demyelination and Remyelination in the Cuprizone Mouse Model.

    PubMed

    Tagge, Ian; O'Connor, Audrey; Chaudhary, Priya; Pollaro, Jim; Berlow, Yosef; Chalupsky, Megan; Bourdette, Dennis; Woltjer, Randy; Johnson, Mac; Rooney, William

    2016-01-01

    Cuprizone administration in mice provides a reproducible model of demyelination and spontaneous remyelination, and has been useful in understanding important aspects of human disease, including multiple sclerosis. In this study, we apply high spatial resolution quantitative MRI techniques to establish the spatio-temporal patterns of acute demyelination in C57BL/6 mice after 6 weeks of cuprizone administration, and subsequent remyelination after 6 weeks of post-cuprizone recovery. MRI measurements were complemented with Black Gold II stain for myelin and immunohistochemical stains for associated tissue changes. Gene expression was evaluated using the Allen Gene Expression Atlas. Twenty-five C57BL/6 male mice were split into control and cuprizone groups; MRI data were obtained at baseline, after 6 weeks of cuprizone, and 6 weeks post-cuprizone. High-resolution (100 μm isotropic) whole-brain coverage magnetization transfer ratio (MTR) parametric maps demonstrated concurrent caudal-to-rostral and medial-to-lateral gradients of MTR decrease within corpus callosum (CC) that correlated well with demyelination assessed histologically. Our results show that demyelination was not limited to the midsagittal line of the corpus callosum, and also that opposing gradients of demyelination occur in the lateral and medial CC. T2-weighted MRI gray/white matter contrast was strong at baseline, weak after 6 weeks of cuprizone treatment, and returned to a limited extent after recovery. MTR decreases during demyelination were observed throughout the brain, most clearly in callosal white matter. Myelin damage and repair appear to be influenced by proximity to oligodendrocyte progenitor cell populations and exhibit an inverse correlation with myelin basic protein gene expression. These findings suggest that susceptibility to injury and ability to repair vary across the brain, and whole-brain analysis is necessary to accurately characterize this model. Whole-brain parametric mapping

  16. Spatio-Temporal Patterns of Demyelination and Remyelination in the Cuprizone Mouse Model

    PubMed Central

    Tagge, Ian; O’Connor, Audrey; Chaudhary, Priya; Pollaro, Jim; Berlow, Yosef; Chalupsky, Megan; Bourdette, Dennis; Woltjer, Randy; Johnson, Mac; Rooney, William

    2016-01-01

    Cuprizone administration in mice provides a reproducible model of demyelination and spontaneous remyelination, and has been useful in understanding important aspects of human disease, including multiple sclerosis. In this study, we apply high spatial resolution quantitative MRI techniques to establish the spatio-temporal patterns of acute demyelination in C57BL/6 mice after 6 weeks of cuprizone administration, and subsequent remyelination after 6 weeks of post-cuprizone recovery. MRI measurements were complemented with Black Gold II stain for myelin and immunohistochemical stains for associated tissue changes. Gene expression was evaluated using the Allen Gene Expression Atlas. Twenty-five C57BL/6 male mice were split into control and cuprizone groups; MRI data were obtained at baseline, after 6 weeks of cuprizone, and 6 weeks post-cuprizone. High-resolution (100μm isotropic) whole-brain coverage magnetization transfer ratio (MTR) parametric maps demonstrated concurrent caudal-to-rostral and medial-to-lateral gradients of MTR decrease within corpus callosum (CC) that correlated well with demyelination assessed histologically. Our results show that demyelination was not limited to the midsagittal line of the corpus callosum, and also that opposing gradients of demyelination occur in the lateral and medial CC. T2-weighted MRI gray/white matter contrast was strong at baseline, weak after 6 weeks of cuprizone treatment, and returned to a limited extent after recovery. MTR decreases during demyelination were observed throughout the brain, most clearly in callosal white matter. Myelin damage and repair appear to be influenced by proximity to oligodendrocyte progenitor cell populations and exhibit an inverse correlation with myelin basic protein gene expression. These findings suggest that susceptibility to injury and ability to repair vary across the brain, and whole-brain analysis is necessary to accurately characterize this model. Whole-brain parametric mapping across

  17. Spatio-temporal distribution patterns of the epibenthic community in the coastal waters of Suriname

    NASA Astrophysics Data System (ADS)

    Willems, Tomas; De Backer, Annelies; Wan Tong You, Kenneth; Vincx, Magda; Hostens, Kris

    2015-10-01

    This study aimed to characterize the spatio-temporal patterns of the epibenthic community in the coastal waters of Suriname. Data were collected on a (bi)monthly basis in 2012-2013 at 15 locations in the shallow (<40 m) coastal area, revealing three spatially distinct species assemblages, related to clear gradients in some environmental parameters. A species-poor coastal assemblage was discerned within the muddy, turbid-water zone (6-20 m depth), dominated by Atlantic seabob shrimp Xiphopenaeus kroyeri (Crustacea: Penaeoidea). Near the 30 m isobath, sediments were much coarser (median grain size on average 345±103 μm vs. 128±53 μm in the coastal assemblage) and water transparency was much higher (on average 7.6±3.5 m vs. 2.4±2.1 m in the coastal assemblage). In this zone, a diverse offshore assemblage was found, characterized by brittle stars (mainly Ophioderma brevispina and Ophiolepis elegans) and a variety of crabs, sea stars and hermit crabs. In between both zones, a transition assemblage was noted, with epibenthic species typically found in either the coastal or offshore assemblages, but mainly characterized by the absence of X. kroyeri. Although the epibenthic community was primarily structured in an on-offshore gradient related to depth, sediment grain size and sediment total organic carbon content, a longitudinal (west-east) gradient was apparent as well. The zones in the eastern part of the Suriname coastal shelf seemed to be more widely stretched along the on-offshore gradient. Although clear seasonal differences were noted in the environmental characteristics (e.g. dry vs. rainy season), this was not reflected in the epibenthic community structure. X. kroyeri reached very high densities (up to 1383 ind 1000 m-²) in the shallow coastal waters of Suriname. As X. kroyeri is increasingly exploited throughout its range, the current study provides the ecological context for its presence and abundance, which is crucial for an ecosystem approach and the

  18. Spatial and temporal patterns of Pleistocene biogenic sediment accumulation in the Gulf of Alaska

    NASA Astrophysics Data System (ADS)

    Moy, C. M.; Bahlburg, H.; Childress, L. B.; Cowan, E. A.; Forwick, M.; Müller, J.; Ribeiro, F.; Ridgway, K. D.; Mix, A. C.

    2013-12-01

    Reconstructing the timing and nature of past changes in aquatic productivity in the Gulf of Alaska (GoA) can shed light on the primary processes driving biogeochemical cycling over geologic timescales. Today, Fe is an important micronutrient that limits primary productivity in surface waters beyond the continental shelf in much of the GoA. However, we have a relatively poor understanding of how Fe-delivery processes, combined with changing climate, environmental, and oceanographic conditions, interact to influence primary production over glacial-interglacial timescales. An important first step is to identify the spatial and temporal patterns of increased productivity in the sediment record. Here, we present sedimentologic and physical property data from IODP Expedition 341 and identify intervals where diatom ooze and diatom-rich mud lithofacies are prevalent during the Pleistocene. Among the Expedition 341 recovered cores, were high-recovery intervals in the outer (Site U1417) and inner (U1418) Surveyor Fan, and from a small slope basin at the edge of the continental shelf (Site U1419). In general, greenish gray diatomaceous ooze (containing >50 % diatoms in smear slides) and diatom-rich mud (>25% diatoms) is found in beds ranging in thickness from 20 to 150 cm, interbedded with gray mud that commonly contains lonestones. Ooze is occasionally found immediately overlying volcanic ash. Compared to non-biogenic mud, diatomaceous sediments are generally characterized by lower magnetic susceptibility, natural gamma ray, bulk density, and higher b* color reflectance. At Site U1417, we observe a frequent occurrence of diatomaceous ooze during the middle Pleistocene relative to the early and late Pleistocene. At Site U1418, intervals containing diatom ooze are less common than at U1417 and biogenic sediments are mainly observed within the late Pleistocene portion of the record. However, higher sedimentation rates at U1418 relative to U1417, and the co-occurrence of sand

  19. Spatio-temporal recharge patterns in a semi-arid alluvial basin with irrigated crops

    NASA Astrophysics Data System (ADS)

    Ruud, N. C.; Harter, T.; Naugle, A. W.

    2001-12-01

    Recharge in semi-arid regions with irrigated crops is predominantly driven by irrigation technology and cropping patterns, but also by the seasonal distribution of rainfall and the availability of irrigation water. A significant amount of basin recharge occurs from ephemeral streams and unlined irrigation canals. A spatially distributed, GIS-based hydrologic model of water application and water use at the land-atmosphere interface was developed to estimate transient recharge to the deep vadose zone and into the unconfined alluvial aquifer. The spatial basis for the hydrologic model are individual landuse units (diffuse recharge) and a network of streams and canals with water seepage (lineal recharge). The land-atmosphere interface and unsaturated zone model component (LAIUZ) is coupled to a surface water supply model component (SWSM) that provides surface water deliveries by district or sub-district, depending on available information. Using LAIUZ and SWSM, we investigate the regional behavior and spatio-temporal variability of deep vadose zone recharge in the 3,800 square kilometer Tule groundwater basin of the San Joaquin Valley, California. Surface water management in the topographically flat basin is divided between two dozen irrigation and water districts. All surface water is imported or is natural discharge into the basin. Groundwater extractions are managed by landowners on a field-by-field basis. Monthly varying recharge and groundwater pumping rates are computed for the hydrologic years 1970 through 2000. The average size of the GIS landuse units is 0.4 sq. kilometers. The GIS coverage distinguishes over 60 landuse types. Applied and consumptive water use are computed based on actual evapotranspiration and known irrigation or water use efficiencies for each landuse unit. Seepage from streams is computed by mass balance. The resulting model estimates of groundwater recharge and pumping are in good agreement with measured groundwater level changes for the

  20. Representation of interval timing by temporally scalable firing patterns in rat prefrontal cortex

    PubMed Central

    Xu, Min; Zhang, Si-yu; Dan, Yang; Poo, Mu-ming

    2014-01-01

    Perception of time interval on the order of seconds is an essential component of cognition, but the underlying neural mechanism remains largely unknown. In rats trained to estimate time intervals, we found that many neurons in the medial prefrontal cortex (PFC) exhibited sustained spiking activity with diverse temporal profiles of firing-rate modulation during the time-estimation period. Interestingly, in tasks involving different intervals, each neuron exhibited firing-rate modulation with the same profile that was temporally scaled by a factor linearly proportional to the instructed intervals. The behavioral variability across trials within each task also correlated with the intertrial variability of the temporal scaling factor. Local cooling of the medial PFC, which affects neural circuit dynamics, significantly delayed behavioral responses. Thus, PFC neuronal activity contributes to time perception, and temporally scalable firing-rate modulation may reflect a general mechanism for neural representation of interval timing. PMID:24367075

  1. Representation of interval timing by temporally scalable firing patterns in rat prefrontal cortex.

    PubMed

    Xu, Min; Zhang, Si-yu; Dan, Yang; Poo, Mu-ming

    2014-01-01

    Perception of time interval on the order of seconds is an essential component of cognition, but the underlying neural mechanism remains largely unknown. In rats trained to estimate time intervals, we found that many neurons in the medial prefrontal cortex (PFC) exhibited sustained spiking activity with diverse temporal profiles of firing-rate modulation during the time-estimation period. Interestingly, in tasks involving different intervals, each neuron exhibited firing-rate modulation with the same profile that was temporally scaled by a factor linearly proportional to the instructed intervals. The behavioral variability across trials within each task also correlated with the intertrial variability of the temporal scaling factor. Local cooling of the medial PFC, which affects neural circuit dynamics, significantly delayed behavioral responses. Thus, PFC neuronal activity contributes to time perception, and temporally scalable firing-rate modulation may reflect a general mechanism for neural representation of interval timing. PMID:24367075

  2. High-order space-time finite element schemes for acoustic and viscodynamic wave equations with temporal decoupling

    PubMed Central

    Banks, H T; Birch, Malcolm J; Brewin, Mark P; Greenwald, Stephen E; Hu, Shuhua; Kenz, Zackary R; Kruse, Carola; Maischak, Matthias; Shaw, Simon; Whiteman, John R

    2014-01-01

    We revisit a method originally introduced by Werder et al. (in Comput. Methods Appl. Mech. Engrg., 190:6685–6708, 2001) for temporally discontinuous Galerkin FEMs applied to a parabolic partial differential equation. In that approach, block systems arise because of the coupling of the spatial systems through inner products of the temporal basis functions. If the spatial finite element space is of dimension D and polynomials of degree r are used in time, the block system has dimension (r + 1)D and is usually regarded as being too large when r > 1. Werder et al. found that the space-time coupling matrices are diagonalizable over for r ⩽100, and this means that the time-coupled computations within a time step can actually be decoupled. By using either continuous Galerkin or spectral element methods in space, we apply this DG-in-time methodology, for the first time, to second-order wave equations including elastodynamics with and without Kelvin–Voigt and Maxwell–Zener viscoelasticity. An example set of numerical results is given to demonstrate the favourable effect on error and computational work of the moderately high-order (up to degree 7) temporal and spatio-temporal approximations, and we also touch on an application of this method to an ambitious problem related to the diagnosis of coronary artery disease. Copyright © 2014 The Authors. International Journal for Numerical Methods in Engineering published by John Wiley & Sons Ltd. PMID:25834284

  3. Numerical Study of the Complex Temporal Pattern of Spontaneous Oscillation in Bullfrog Saccular Hair Cells

    NASA Astrophysics Data System (ADS)

    Roongthumskul, Yuttana; Fredrickson-Hemsing, Lea; Kao, Albert; Bozovic, Dolores

    2011-11-01

    Hair bundles of the bullfrog sacculus display spontaneous oscillations that show complex temporal profiles. Quiescent intervals are typically interspersed with oscillations, analogous to bursting behavior observed in neural systems. By introducing slow calcium dynamics into the theoretical model of bundle mechanics, we reproduce numerically the multi-mode oscillations and explore the effects of internal parameters on the temporal profiles and the frequency tuning of their linear response functions. We also study the effects of mechanical overstimulation on the oscillatory behavior.

  4. Frequency and time pattern differences in acoustic signals produced by Prostephanus truncatus (Horn) (Coleoptera: Bostrichidae) and Sitophilus zeamais (Motschulsky) (Coleoptera: Curculionidae)in stored maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The acoustic signals emitted by the last stage larval instars and adults of Prostephanus truncatus and Sitophilus zeamais in stored maize were investigated. Analyses were performed to identify brief, 1-10-ms broadband sound impulses of five different frequency patterns produced by larvae and adults,...

  5. Spatial and temporal patterns of larval di