Science.gov

Sample records for acoustics temporal patterns

  1. In-Situ Optical and Acoustical Measurements of the Buoyant Cyanobacterium P. Rubescens: Spatial and Temporal Distribution Patterns

    PubMed Central

    Hofmann, Hilmar; Peeters, Frank

    2013-01-01

    Optical (fluorescence) and acoustic in-situ techniques were tested in their ability to measure the spatial and temporal distribution of plankton in freshwater ecosystems with special emphasis on the harmful and buoyant cyanobacterium P. rubescens. Fluorescence was measured with the multi-spectral FluoroProbe (Moldaenke FluoroProbe, MFP) and a Seapoint Chlorophyll Fluorometer (SCF). In-situ measurements of the acoustic backscatter strength (ABS) were conducted with three different acoustic devices covering multiple acoustic frequencies (614 kHz ADCP, 2 MHz ADP, and 6 MHz ADV). The MFP provides a fast and reliable technique to measure fluorescence at different wavelengths in situ, which allows discriminating between P. rubescens and other phytoplankton species. All three acoustic devices are sensitive to P. rubescens even if other scatterers, e.g., zooplankton or suspended sediment, are present in the water column, because P. rubescens containing gas vesicles has a strong density difference and hence acoustic contrast to the ambient water and other scatterers. After calibration, the combination of optical and acoustical measurements not only allows qualitative and quantitative observation of P. rubescens, but also distinction between P. rubescens, other phytoplankton, and zooplankton. As the measuring devices can sample in situ at high rates they enable assessment of plankton distributions at high temporal (minutes) and spatial (decimeters) resolution or covering large temporal (seasonal) and spatial (basin scale) scales. PMID:24303028

  2. Temporal patterns in the acoustic signals of beaked whales at Cross Seamount.

    PubMed

    Johnston, D W; McDonald, M; Polovina, J; Domokos, R; Wiggins, S; Hildebrand, J

    2008-04-23

    Seamounts may influence the distribution of marine mammals through a combination of increased ocean mixing, enhanced local productivity and greater prey availability. To study the effects of seamounts on the presence and acoustic behaviour of cetaceans, we deployed a high-frequency acoustic recording package on the summit of Cross Seamount during April through October 2005. The most frequently detected cetacean vocalizations were echolocation sounds similar to those produced by ziphiid and mesoplodont beaked whales together with buzz-type signals consistent with prey-capture attempts. Beaked whale signals occurred almost entirely at night throughout the six-month deployment. Measurements of prey presence with a Simrad EK-60 fisheries acoustics echo sounder indicate that Cross Seamount may enhance local productivity in near-surface waters. Concentrations of micronekton were aggregated over the seamount in near-surface waters at night, and dense concentrations of nekton were detected across the surface of the summit. Our results suggest that seamounts may provide enhanced foraging opportunities for beaked whales during the night through a combination of increased productivity, vertical migrations by micronekton and local retention of prey. Furthermore, the summit of the seamount may act as a barrier against which whales concentrate prey. PMID:18252660

  3. Writing magnetic patterns with surface acoustic waves

    SciTech Connect

    Li, Weiyang; Buford, Benjamin; Jander, Albrecht; Dhagat, Pallavi

    2014-05-07

    A novel patterning technique that creates magnetization patterns in a continuous magnetostrictive film with surface acoustic waves is demonstrated. Patterns of 10??m wide stripes of alternating magnetization and a 3??m dot of reversed magnetization are written using standing and focusing acoustic waves, respectively. The magnetization pattern is size-tunable, erasable, and rewritable by changing the magnetic field and acoustic power. This versatility, along with its solid-state implementation (no moving parts) and electronic control, renders it as a promising technique for application in magnetic recording, magnonic signal processing, magnetic particle manipulation, and spatial magneto-optical modulation.

  4. Diel patterns and temporal trends in spawning activities of Robust Redhorse and River Redhorse in Georgia, assessed using passive acoustic monitoring

    USGS Publications Warehouse

    Straight, Carrie A.; Jackson, C. Rhett; Freeman, Byron J.; Freeman, Mary C.

    2015-01-01

    The conservation of imperiled species depends upon understanding threats to the species at each stage of its life history. In the case of many imperiled migratory fishes, understanding how timing and environmental influences affect reproductive behavior could provide managers with information critical for species conservation. We used passive acoustic recorders to document spawning activities for two large-bodied catostomids (Robust Redhorse Moxostoma robustum in the Savannah and Broad rivers, Georgia, and River Redhorse M. carinatum in the Coosawattee River, Georgia) in relation to time of day, water temperature, discharge variation, moonlight, and weather. Robust Redhorse spawning activities in the Savannah and Broad rivers were more frequent at night or in the early morning (0100–0400 hours and 0800–1000 hours, respectively) and less frequent near midday (1300 hours). Spawning attempts in the Savannah and Broad rivers increased over a 3–4-d period and then declined. River Redhorse spawning activities in the Coosawattee River peaked on the first day of recording and declined over four subsequent days; diel patterns were less discernible, although moon illumination was positively associated with spawning rates, which was also observed for Robust Redhorses in the Savannah River. Spawning activity in the Savannah and Broad rivers was negatively associated with water temperature, and spawning activity increased in association with cloud cover in the Savannah River. A large variation in discharge was only measured in the flow-regulated Savannah River and was not associated with spawning attempts. To our knowledge, this is the first study to show diel and multiday patterns in spawning activities for anyMoxostoma species. These patterns and relationships between the environment and spawning activities could provide important information for the management of these species downstream of hydropower facilities.

  5. Transduction of temporal patterns by single neurons.

    PubMed

    Hooper, S L

    1998-12-01

    As our ability to communicate by Morse code illustrates, nervous systems can produce motor outputs, and identify sensory inputs, based on temporal patterning alone. Although this ability is central to a wide range of sensory and motor tasks, the ways in which nervous systems represent temporal patterns are not well understood. I show here that individual neurons of the lobster pyloric network can integrate rhythmic patterned input over the long times (hundreds of milliseconds) characteristic of many behaviorally relevant patterns, and that their firing delays vary as a graded function of the pattern's temporal character. These neurons directly transduce temporal patterns into a neural code, and constitute a novel biological substrate for temporal pattern detection and production. The combined activities of several such neurons can encode simple rhythmic patterns, and I provide a model illustrating how this could be achieved. PMID:10196589

  6. Analysis of temporal patterns of communication signals.

    PubMed

    Pollack, G S

    2001-12-01

    Temporal pattern is a crucial feature of communication signals, and neurons in the brains of many animals respond selectively to behaviorally relevant temporal features of sensory stimuli. Many aspects of neural function contribute to this selectivity, including membrane biophysics, channel properties, synaptic physiology and network structure. PMID:11741026

  7. MINING TEMPORAL SEQUENCES TO DISCOVER INTERESTING PATTERNS

    E-print Network

    Holder, Lawrence B.

    MINING TEMPORAL SEQUENCES TO DISCOVER INTERESTING PATTERNS Edwin O. Heierman, III, G. Michael, Texas 76019-0015 {heierman, youngbld, cook@cse.uta.edu ABSTRACT When mining temporal sequences sequences. In this paper, we present a novel data mining technique based on the Minimum Description Length

  8. Resurgence of Temporal Patterns of Responding

    ERIC Educational Resources Information Center

    Cancado, Carlos R. X.; Lattal, Kennon A.

    2011-01-01

    The resurgence of temporal patterns of key pecking by pigeons was investigated in two experiments. In Experiment 1, positively accelerated and linear patterns of responding were established on one key under a discrete-trial multiple fixed-interval variable-interval schedule. Subsequently, only responses on a second key produced reinforcers…

  9. Mining Sequential Patterns from Temporal Streaming Data

    E-print Network

    Malerba, Donato

    Mining Sequential Patterns from Temporal Streaming Data A. Marascu and F. Masseglia INRIA Sophia.Marascu,Florent.Masseglia}@sophia.inria.fr Abstract. In recent years, emerging applications introduced new con- straints for data mining methods of our knowledge, no method has been proposed for mining sequential patterns in data streams. We argue

  10. Music Perception with Temporal Cues in Acoustic and Electric Hearing

    E-print Network

    Chen, Zhongping

    - plant listeners performed similarly to the normal- hearing listeners with rate discrimination differ- plant listeners performed 5­25 percentage points poorer than the normal-hearing listeners. The nor- mal-hearingMusic Perception with Temporal Cues in Acoustic and Electric Hearing Ying-Yee Kong, Rachel Cruz, J

  11. Acoustic and Temporal Partitioning of Cicada Assemblages in City and Mountain Environments

    PubMed Central

    Shieh, Bao-Sen; Liang, Shih-Hsiung; Chiu, Yuh-Wen

    2015-01-01

    Comparing adaptations to noisy city environments with those to natural mountain environments on the community level can provide significant insights that allow an understanding of the impact of anthropogenic noise on invertebrates that employ loud calling songs for mate attraction, especially when each species has its distinct song, as in the case of cicadas. In this study, we investigated the partitioning strategy of cicada assemblages in city and mountain environments by comparing the acoustic features and calling activity patterns of each species, recorded using automated digital recording systems. Our comparison of activity patterns of seasonal and diel calling revealed that there was no significant temporal partitioning of cicada assemblages in either environment. In addition, there was no correlation between the acoustic distance based on spectral features and temporal segregation. Heterospecific spectral overlap was low in both city and mountain environments, although city and mountain cicada assemblages were subject to significantly different levels of anthropogenic or interspecific noise. Furthermore, for the common species found in both environments, the calling activity patterns at both seasonal and diel time scales were significantly consistent across sites and across environments. We suggest that the temporal calling activity is constrained by endogenous factors for each species and is less flexible in response to external factors, such as anthropogenic noise. As a result, cicada assemblages in city environments with low species diversity do not demonstrate a more significant temporal partitioning than those in mountain environments with high species diversity. PMID:25590620

  12. Auditory Temporal Pattern Discrimination and Reading Ability

    ERIC Educational Resources Information Center

    McAnally, Ken I.; Castles, Anne; Bannister, Susan

    2004-01-01

    The relation between reading ability and performance on an auditory temporal pattern discrimination task was investigated in children who were either good or delayed readers. The stimuli in the primary task consisted of sequences of tones, alternating between high and low frequencies. The threshold interstimulus interval (ISI) for discrimination…

  13. Spatio-temporal Spike Pattern Classification in Neuromorphic Systems

    E-print Network

    -temporal spike patterns, and used for decision making. Barn owls for example rely on auditory cues to capture the temporal delay in the spikes orig- inating at the two ears of the owl [8, 9]. Remarkably precise temporal

  14. Neural representation of three-dimensional acoustic space in the human temporal lobe

    PubMed Central

    Zhang, Xiaolu; Zhang, Qingtian; Hu, Xiaolin; Zhang, Bo

    2015-01-01

    Sound localization is an important function of the human brain, but the underlying cortical mechanisms remain unclear. In this study, we recorded auditory stimuli in three-dimensional space and then replayed the stimuli through earphones during functional magnetic resonance imaging (fMRI). By employing a machine learning algorithm, we successfully decoded sound location from the blood oxygenation level-dependent signals in the temporal lobe. Analysis of the data revealed that different cortical patterns were evoked by sounds from different locations. Specifically, discrimination of sound location along the abscissa axis evoked robust responses in the left posterior superior temporal gyrus (STG) and right mid-STG, discrimination along the elevation (EL) axis evoked robust responses in the left posterior middle temporal lobe (MTL) and right STG, and discrimination along the ordinate axis evoked robust responses in the left mid-MTL and right mid-STG. These results support a distributed representation of acoustic space in human cortex. PMID:25932011

  15. Structure and patterns of acoustic intensity fields

    NASA Astrophysics Data System (ADS)

    Pascal, J. C.

    Acoustic radiation and propagation are investigated theoretically, expanding and clarifying the vectorial description of energy fields developed by Pascal (1981 and 1984). The equations governing the instantaneous acoustic intensity are presented; the complex intensity concept is introduced; equations for averaged energy parameters are derived; acoustic-intensity potentials are defined; and the structures of the interference fields of two perpendicular waves and a plane wave perpendicular to a standing wave are presented graphically and discussed. It is pointed out that the reactive intensity, although it is a powerful tool for understanding the structure of acoustic fields, cannot be used directly to locate sound sources.

  16. Acoustic backscattering by Hawaiian lutjanid snappers. II. Broadband temporal and spectral structure

    E-print Network

    Benoit-Bird, Kelly J.

    Acoustic backscattering by Hawaiian lutjanid snappers. II. Broadband temporal and spectral The characteristics of acoustic echoes from six species of deep-dwelling up to 400 m Hawaiian Lujanid snappers were consistent within species and were easily distinguishable between species. © 2003 Acoustical Society

  17. Temporal Patterns of Behavior from the Scheduling of Psychology Quizzes

    ERIC Educational Resources Information Center

    Jarmolowicz, David P.; Hayashi, Yusuke; St. Peter Pipkin, Claire

    2010-01-01

    Temporal patterns of behavior have been observed in real-life performances such as bill passing in the U.S. Congress, in-class studying, and quiz taking. However, the practical utility of understanding these patterns has not been evaluated. The current study demonstrated the presence of temporal patterns of quiz taking in a university-level…

  18. A Central Pattern Generator Producing Alternative Outputs: Temporal Pattern of Premotor Activity

    E-print Network

    Calabrese, Ronald

    A Central Pattern Generator Producing Alternative Outputs: Temporal Pattern of Premotor Activity´a, and Ronald L. Calabrese. A central pattern generator producing alternative outputs: temporal pattern.2006. The central pattern generator for heartbeat in medicinal leeches constitutes seven identified pairs

  19. Scaling properties in temporal patterns of schizophrenia

    NASA Astrophysics Data System (ADS)

    Dünki, R. M.; Ambühl, B.

    1996-02-01

    Investigations into the patterns of schizophrenia reveal evidence of scaling properties in temporal behaviour. This is shown in the spectral properties of mid-range and long-range (up to two years) daily recordings from a sample of patients drawn at the therapeutic dwelling SOTERIA (Ambühl et al., in: Springer Series in Synergetics, Vol. 58, eds. Tschacher et al. (Springer, Berlin, 1992) pp. 195-203 and references therein) of the Psychiatric University Hospital in Bern. The therapeutic setting is unique in that it tries to avoid treatment by medication. Power law behaviour has been found within fractal walk analysis and Fourier spectra for the daily fluctuations. A simple dynamic principle, based on a generic intermittency model, is put in relation to these time series thus predicting an additional scaling law for the distribution P( T) of time spans T between successive hospitalizations. Testing this hypothesis with our data shows only insignificant deviations. A possible role of this dynamic principle in the risk assignment of psychotic phases is explored with the help of an example.

  20. Temporal coherence of the acoustic field forward propagated through a continental shelf with random internal waves

    E-print Network

    Gong, Zheng

    An analytical model derived from normal mode theory for the accumulated effects of range-dependent multiple forward scattering is applied to estimate the temporal coherence of the acoustic field forward propagated through ...

  1. Temporal analysis of acoustic emission from a plunged granular bed

    NASA Astrophysics Data System (ADS)

    Tsuji, Daisuke; Katsuragi, Hiroaki

    2015-10-01

    The statistical property of acoustic emission (AE) events from a plunged granular bed is analyzed by means of actual-time and natural-time analyses. These temporal analysis methods allow us to investigate the details of AE events that follow a power-law distribution. In the actual-time analysis, the calm-time distribution, and the decay of the event-occurrence density after the largest event (i.e., the Omori-Utsu law) are measured. Although the former always shows a power-law form, the latter does not always obey a power law. Markovianity of the event-occurrence process is also verified using a scaling law by assuming that both of them exhibit power laws. We find that the effective shear strain rate is a key parameter to classify the emergence rate of power-law nature and Markovianity in granular AE events. For the natural-time analysis, the existence of self-organized critical states is revealed by calculating the variance of natural time ?k, where k th natural time of N events is defined as ?k=k /N . In addition, the energy difference distribution can be fitted by a q -Gaussian form, which is also consistent with the criticality of the system.

  2. Temporal analysis of acoustic emission from a plunged granular bed

    E-print Network

    Daisuke Tsuji; Hiroaki Katsuragi

    2015-09-18

    The statistical property of acoustic emission (AE) events from a plunged granular bed is analyzed by means of actual time and natural time analyses. These temporal analysis methods allow us to investigate the details of AE events that follow a power-law distribution. In the actual time analysis, the calm time distribution and the decay of the event-occurrence density after the largest event (i.e., Omori-Utsu law) are measured. Although the former always shows a power-law form, the latter does not always obey a power law. Markovianity of the event-occurrence process is also verified using a scaling law by assuming that both of them exhibit power laws. We find that the effective shear strain rate is a key parameter to classify the emergence rate of power-law nature and Markovianity in the granular AE events. For the natural time analysis, the existence of self organized critical (SOC) states is revealed by calculating the variance of natural time $\\chi_k$, where $k$th natural time of N events is defined as $\\chi_k=k/N$. In addition, the energy difference distribution can be fitted by a $q$-Gaussian form, which is also consistent with the criticality of the system.

  3. Temporal analysis of acoustic emission from a plunged granular bed.

    PubMed

    Tsuji, Daisuke; Katsuragi, Hiroaki

    2015-10-01

    The statistical property of acoustic emission (AE) events from a plunged granular bed is analyzed by means of actual-time and natural-time analyses. These temporal analysis methods allow us to investigate the details of AE events that follow a power-law distribution. In the actual-time analysis, the calm-time distribution, and the decay of the event-occurrence density after the largest event (i.e., the Omori-Utsu law) are measured. Although the former always shows a power-law form, the latter does not always obey a power law. Markovianity of the event-occurrence process is also verified using a scaling law by assuming that both of them exhibit power laws. We find that the effective shear strain rate is a key parameter to classify the emergence rate of power-law nature and Markovianity in granular AE events. For the natural-time analysis, the existence of self-organized critical states is revealed by calculating the variance of natural time ?_{k}, where kth natural time of N events is defined as ?_{k}=k/N. In addition, the energy difference distribution can be fitted by a q-Gaussian form, which is also consistent with the criticality of the system. PMID:26565229

  4. Significance of temporal and spectral acoustic cues for sexual recognition in Xenopus laevis

    E-print Network

    Kelley, Darcy B.

    recognition and for spectral acoustic cues in conveying female attractiveness in X. laevis. Keywords: inter-sexualSignificance of temporal and spectral acoustic cues for sexual recognition in Xenopus laevis Cle As in many anurans, males of the totally aquatic species, Xenopus laevis, advertise their sexual receptivity

  5. Coding of multisensory temporal patterns in human superior temporal sulcus

    PubMed Central

    Noesselt, Tömme; Bergmann, Daniel; Heinze, Hans-Jochen; Münte, Thomas; Spence, Charles

    2012-01-01

    Philosophers, psychologists, and neuroscientists have long been interested in how the temporal aspects of perception are represented in the brain. In the present study, we investigated the neural basis of the temporal perception of synchrony/asynchrony for audiovisual speech stimuli using functional magnetic resonance imaging (fMRI). Subjects judged the temporal relation of (a)synchronous audiovisual speech streams, and indicated any changes in their perception of the stimuli over time. Differential hemodynamic responses for synchronous versus asynchronous stimuli were observed in the multisensory superior temporal sulcus complex (mSTS-c) and prefrontal cortex. Within mSTS-c we found adjacent regions expressing an enhanced BOLD-response to the different physical (a)synchrony conditions. These regions were further modulated by the subjects' perceptual state. By calculating the distances between the modulated regions within mSTS-c in single-subjects we demonstrate that the “auditory leading (AL)” and “visual leading (VL) areas” lie closer to “synchrony areas” than to each other. Moreover, analysis of interregional connectivity indicates a stronger functional connection between multisensory prefrontal cortex and mSTS-c during the perception of asynchrony. Taken together, these results therefore suggest the presence of distinct sub-regions within the human STS-c for the maintenance of temporal relations for audiovisual speech stimuli plus differential functional connectivity with prefrontal regions. The respective local activity in mSTS-c is dependent both upon the physical properties of the stimuli presented and upon the subjects' perception of (a)synchrony. PMID:22973202

  6. Tunable Nanowire Patterning Using Standing Surface Acoustic Waves

    PubMed Central

    Chen, Yuchao; Ding, Xiaoyun; Lin, Sz-Chin Steven; Yang, Shikuan; Huang, Po-Hsun; Nama, Nitesh; Zhao, Yanhui; Nawaz, Ahmad Ahsan; Guo, Feng; Wang, Wei; Gu, Yeyi; Mallouk, Thomas E.; Huang, Tony Jun

    2014-01-01

    Patterning of nanowires in a controllable, tunable manner is important for the fabrication of functional nanodevices. Here we present a simple approach for tunable nanowire patterning using standing surface acoustic waves (SSAW). This technique allows for the construction of large-scale nanowire arrays with well-controlled patterning geometry and spacing within 5 seconds. In this approach, SSAWs were generated by interdigital transducers (IDTs), which induced a periodic alternating current (AC) electric field on the piezoelectric substrate and consequently patterned metallic nanowires in suspension. The patterns could be deposited onto the substrate after the liquid evaporated. By controlling the distribution of the SSAW field, metallic nanowires were assembled into different patterns including parallel and perpendicular arrays. The spacing of the nanowire arrays could be tuned by controlling the frequency of the surface acoustic waves. Additionally, we observed 3D spark-shape nanowire patterns in the SSAW field. The SSAW-based nanowire-patterning technique presented here possesses several advantages over alternative patterning approaches, including high versatility, tunability, and efficiency, making it promising for device applications. PMID:23540330

  7. Temporal feature of BOLD responses varies with temporal patterns of movement.

    PubMed

    Tomatsu, Saeka; Someya, Yoshiaki; Sung, Yul-Wan; Ogawa, Seiji; Kakei, Shinji

    2008-11-01

    Which brain sites represent the final form of motor commands that encode temporal patterns of muscle activities? Here, we show the possible brain sites which have activity equivalent to the motor commands with functional magnetic resonance imaging (fMRI). We hypothesized that short-temporal patterns of movements or stimuli are reflected in blood-oxygenation-level-dependent (BOLD) responses and we searched for regions representing the response. Participants performed two temporal patterns of tapping and/or listened to the same patterns of auditory stimuli in a 3T fMRI. The patterns were designed to have the same number (11) of events and the same duration, but different temporal distribution of events. The 11 events were divided into two parts (10 repetitive taps and one stand-alone tap) and the interval of the two parts was 3s. The two patterns had reverse order of the two parts. The results revealed that different temporal patterns of auditory stimuli were represented in different temporal features of BOLD responses in the bilateral auditory cortex, whereas different temporal patterns of tapping were reflected in contralateral primary motor cortex and the ipsilateral anterior cerebellum. In bilateral premotor cortex, supplementary motor area, visual cortex, and posterior cerebellum, task-related BOLD responses were exhibited, but their responses did not reflect the temporal patterns of the movement and/or stimuli. One possible explanation is that the neuronal activities were similar for the two patterns in these regions. The sensitivity of the BOLD response to the temporal patterns reflects local differences in functional contributions to the tasks. The present experimental design and analysis may be useful to reveal particular brain regions that participate in multiple functions. PMID:18789981

  8. 1987 WET DEPOSITION TEMPORAL AND SPATIAL PATTERNS IN NORTH AMERICA

    EPA Science Inventory

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1987 and spatial patterns for 1987. he report investigates the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate...

  9. Spatial and temporal variability of plankton stocks from acoustic backscatter intensity and direct measurements in the northeastern Gulf of Mexico 

    E-print Network

    Scott, Rebecca Lee

    2001-01-01

    To investigate the utility of Acoustic Doppler Current Profilers (ADCPs) for estimating the spatial and temporal variability of zooplankton stocks in the northeastern Gulf of Mexico, acoustic data from a moored array of ADCPs were used...

  10. TEMPORAL PATTERNS AND MODAL Johan van Benthem

    E-print Network

    Amsterdam, University of

    temporal systems' is mixing the analysis of 'logical time' with standard physical engineering techniques process theories (dynamic logic, µ­calculus, process algebra), surveyed in Colin Stirling's contribution to this issue. (Cf. also Stirling 1

  11. Finding Spatio-Temporal Patterns in Large Sensor Datasets

    ERIC Educational Resources Information Center

    McGuire, Michael Patrick

    2010-01-01

    Spatial or temporal data mining tasks are performed in the context of the relevant space, defined by a spatial neighborhood, and the relevant time period, defined by a specific time interval. Furthermore, when mining large spatio-temporal datasets, interesting patterns typically emerge where the dataset is most dynamic. This dissertation is…

  12. Spatial Patterns and Temporal Trajectories of the Bog Ground Layer

    E-print Network

    Benscoter, Brian W.

    Spatial Patterns and Temporal Trajectories of the Bog Ground Layer Along a Post-Fire Chronosequence the first comprehen- sive description of the spatio-temporal post-fire successional trajectory of the bog conditions and initiating succession. How- ever, the successional trajectory of the ground layer community

  13. Spatial and temporal variability of zooplankton off New Caledonia (Southwestern Pacific) from acoustics and net measurements

    NASA Astrophysics Data System (ADS)

    Smeti, Houssem; Pagano, Marc; Menkes, Christophe; Lebourges-Dhaussy, Anne; Hunt, Brian P. V.; Allain, Valerie; Rodier, Martine; de Boissieu, Florian; Kestenare, Elodie; Sammari, Cherif

    2015-04-01

    Spatial and temporal distribution of zooplankton off New Caledonia in the eastern Coral Sea was studied during two multidisciplinary cruises in 2011, during the cool and the hot seasons. Acoustic measurements of zooplankton were made using a shipborne acoustic Doppler current profiler (S-ADCP), a scientific echosounder and a Tracor acoustic profiling system (TAPS). Relative backscatter from ADCP was converted to biomass estimates using zooplankton weights from net-samples collected during the cruises. Zooplankton biomass was estimated using four methods: weighing, digital imaging (ZooScan), ADCP and TAPS. Significant correlations were found between the different biomass estimators and between the backscatters of the ADCP and the echosounder. There was a consistent diel pattern in ADCP derived biomass and echosounder backscatter resulting from the diel vertical migration (DVM) of zooplankton. Higher DVM amplitudes were associated with higher abundance of small zooplankton and cold waters to the south of the study area, while lower DVM amplitudes in the north were associated with warmer waters and higher abundance of large organisms. Zooplankton was largely dominated by copepods (71-73%) among which calanoids prevailed (40-42%), with Paracalanus spp. as the dominant species (16-17%). Overall, zooplankton exhibited low abundance and biomass (mean night dry biomass of 4.7 ± 2.2 mg m3 during the cool season and 2.4 ± 0.4 mg m3 during the hot season) but high richness and diversity (Shannon index ˜4). Substantially enhanced biomass and abundance appeared to be episodically associated with mesoscale features contributing to shape a rather patchy zooplankton distribution.

  14. Temporal Patterns of Communication in the Workplace

    ERIC Educational Resources Information Center

    Su, Norman Makoto

    2009-01-01

    In this dissertation, we report on results of an in-depth observational study to understand the temporal dimension of communication in the workplace. By employing the "shadowing" method for in situ to-the-second data gathering of information workers' behaviors, we gained a detailed snapshot of informants' workdays, "warts and all." Our…

  15. Spatial, Temporal and Spatio-Temporal Patterns of Maritime Piracy

    PubMed Central

    Marchione, Elio

    2013-01-01

    Objectives: To examine patterns in the timing and location of incidents of maritime piracy to see whether, like many urban crimes, attacks cluster in space and time. Methods: Data for all incidents of maritime piracy worldwide recorded by the National Geospatial Intelligence Agency are analyzed using time-series models and methods originally developed to detect disease contagion. Results: At the macro level, analyses suggest that incidents of pirate attacks are concentrated in five subregions of the earth’s oceans and that the time series for these different subregions differ. At the micro level, analyses suggest that for the last 16 years (or more), pirate attacks appear to cluster in space and time suggesting that patterns are not static but are also not random. Conclusions: Much like other types of crime, pirate attacks cluster in space, and following an attack at one location the risk of others at the same location or nearby is temporarily elevated. The identification of such regularities has implications for the understanding of maritime piracy and for predicting the future locations of attacks. PMID:25076796

  16. Pattern formation in a ring cavity with temporally incoherent feedback

    E-print Network

    Carmon, Tal

    Pattern formation in a ring cavity with temporally incoherent feedback Tal Schwartz, Jason W laser action. © 2004 Optical Society of America OCIS codes: 190.3100, 190.4420. 1. INTRODUCTION Many the emerging pattern is an array of solitons.2 In the past few decades, following the inven- tion of lasers

  17. Temporal Patterns in Online Food Innovation Tomasz Kusmierczyk

    E-print Network

    Nørvåg, Kjetil

    . In addition to a high correlation between online food recipe consumption and production patterns, we alsoTemporal Patterns in Online Food Innovation Tomasz Kusmierczyk NTNU Trondheim, Norway tomaszku@idi.ntnu.no ABSTRACT Since innovation plays an important role in the context of food, as evident in how successful

  18. T-Patterns Revisited: Mining for Temporal Patterns in Sensor Data

    PubMed Central

    Salah, Albert Ali; Pauwels, Eric; Tavenard, Romain; Gevers, Theo

    2010-01-01

    The trend to use large amounts of simple sensors as opposed to a few complex sensors to monitor places and systems creates a need for temporal pattern mining algorithms to work on such data. The methods that try to discover re-usable and interpretable patterns in temporal event data have several shortcomings. We contrast several recent approaches to the problem, and extend the T-Pattern algorithm, which was previously applied for detection of sequential patterns in behavioural sciences. The temporal complexity of the T-pattern approach is prohibitive in the scenarios we consider. We remedy this with a statistical model to obtain a fast and robust algorithm to find patterns in temporal data. We test our algorithm on a recent database collected with passive infrared sensors with millions of events. PMID:22163613

  19. Analysis of brain patterns using temporal measures

    SciTech Connect

    Georgopoulos, Apostolos

    2015-08-11

    A set of brain data representing a time series of neurophysiologic activity acquired by spatially distributed sensors arranged to detect neural signaling of a brain (such as by the use of magnetoencephalography) is obtained. The set of brain data is processed to obtain a dynamic brain model based on a set of statistically-independent temporal measures, such as partial cross correlations, among groupings of different time series within the set of brain data. The dynamic brain model represents interactions between neural populations of the brain occurring close in time, such as with zero lag, for example. The dynamic brain model can be analyzed to obtain the neurophysiologic assessment of the brain. Data processing techniques may be used to assess structural or neurochemical brain pathologies.

  20. Thermal Acoustic Waves from Wall with Temporal Temperature Change

    NASA Astrophysics Data System (ADS)

    Sakaguchi, G.; Tsukamoto, M.; Sakurai, A.

    2011-05-01

    Although phenomenon of thermo-acoustic wave has been known for many years in some familiar experiences such as "singing flame" from Bunsen burner, recent trends of utilizing it for the industrial applications urge the understandings of basic details of the phenomenon itself. Here we consider, in this connection, the problem of acoustic wave generation from a particular heat source of solid wall whose temperature changes with time and the phenomenon of temperature change by standing wave oscillating in closed tube. For these we set a hollow tube whose temperature at its one end wall changes with time, and compute flow field inside using the molecular kinetic model, which is found to be more convenient for the boundary value fitting than the ordinary acoustic theory system to this problem. In practice, we use the Boltzmann equation with the BGK approximation, and compute two cases above in monotonic and sinusoidal temperature changes with time. Results of both cases show propagating density wave from the wall almost in acoustic velocity to the first case and the temperature decreases in average to the second case.

  1. The patterning mechanism of carbon nanotubes using surface acoustic waves: the acoustic radiation effect or the dielectrophoretic effect

    NASA Astrophysics Data System (ADS)

    Ma, Zhichao; Guo, Jinhong; Liu, Yan Jun; Ai, Ye

    2015-08-01

    In this study, we present a simple technique capable of assembling and patterning suspended CNTs using a standing surface acoustic wave (SSAW) field. Individual CNTs could be assembled into larger CNT bundles and patterned in periodic positions on a substrate surface. The mechanism of the SSAW-based patterning technique has been investigated using both numerical simulation and experimental study. It has been found that the acoustic radiation effect due to the acoustic pressure field and the dielectrophoretic (DEP) effect induced by the electric field co-existing in the patterning process however play different roles depending on the properties of the suspended particles and the suspension medium. In the SSAW-based patterning of highly conductive CNTs with high aspect ratio geometry, the positive DEP effect dominates over the acoustic radiation effect. In contrast, the acoustic radiation effect dominates over the DEP effect when manipulating less conductive, spherical or low aspect ratio particles or biological cells. These results provide a meaningful insight into the mechanism of SSAW-based patterning, which is of great help to guide the effective use of this patterning technique for various applications.In this study, we present a simple technique capable of assembling and patterning suspended CNTs using a standing surface acoustic wave (SSAW) field. Individual CNTs could be assembled into larger CNT bundles and patterned in periodic positions on a substrate surface. The mechanism of the SSAW-based patterning technique has been investigated using both numerical simulation and experimental study. It has been found that the acoustic radiation effect due to the acoustic pressure field and the dielectrophoretic (DEP) effect induced by the electric field co-existing in the patterning process however play different roles depending on the properties of the suspended particles and the suspension medium. In the SSAW-based patterning of highly conductive CNTs with high aspect ratio geometry, the positive DEP effect dominates over the acoustic radiation effect. In contrast, the acoustic radiation effect dominates over the DEP effect when manipulating less conductive, spherical or low aspect ratio particles or biological cells. These results provide a meaningful insight into the mechanism of SSAW-based patterning, which is of great help to guide the effective use of this patterning technique for various applications. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr04272k

  2. 1988 Wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Simpson, J.C.; Olsen, A.R.; Bittner, E.A.

    1992-03-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1988 and spatial patterns for 1988. It is the third in a series of reports that investigate the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. Mosaic maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1988 annual, winter, and summer periods. Temporal pattern analyses use a subset of 35 sites over a 10-year (1979--1988) period and an expanded subset of 137 sites, with greater spatial coverage, over a 7-year (1982--1988) period. The 10-year period represents the longest period with wet deposition monitoring data available that has a sufficient number of sites with data of known quality to allow a descriptive summary of annual temporal patterns. Sen's median trend estimate and Kendall's seasonal tau (KST) test are calculated for each ion species concentration and deposition at each site in both subsets.

  3. 1988 Wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Simpson, J.C.; Olsen, A.R.; Bittner, E.A.

    1992-03-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1988 and spatial patterns for 1988. It is the third in a series of reports that investigate the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. Mosaic maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1988 annual, winter, and summer periods. Temporal pattern analyses use a subset of 35 sites over a 10-year (1979--1988) period and an expanded subset of 137 sites, with greater spatial coverage, over a 7-year (1982--1988) period. The 10-year period represents the longest period with wet deposition monitoring data available that has a sufficient number of sites with data of known quality to allow a descriptive summary of annual temporal patterns. Sen`s median trend estimate and Kendall`s seasonal tau (KST) test are calculated for each ion species concentration and deposition at each site in both subsets.

  4. Crime Forecasting Using Spatio-Temporal Pattern with Ensemble Learning

    E-print Network

    Ding, Wei

    Crime Forecasting Using Spatio-Temporal Pattern with Ensemble Learning Chung-Hsien Yu1 , Wei Ding1 University Avenue, Lowell, MA 01854, USA Melissa_Morabito@uml.edu Abstract. Crime forecasting is notoriously difficult. A crime incident is a multi-dimensional complex phenomenon that is closely associated

  5. A SIMPLE HETERODYNE TEMPORAL SPECKLE-PATTERN INTERFEROMETER

    SciTech Connect

    Wong, W. O.; Gao, Z.; Lu, J.

    2010-05-28

    A common light path design of heterodyne speckle pattern interferometer based on temporal speckle pattern interferometry is proposed for non-contact, full-field and real-time continuous displacement measurement. Double frequency laser is produced by rotating a half wave plate. An experiment was carried out to measure the dynamic displacement of a cantilever plate for testing the proposed common path heterodyne speckle pattern interferometer. The accuracy of displacement measurement was checked by measuring the motion at the mid-point of the plate with a point displacement sensor.

  6. 1986 wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Olsen, A.R.

    1989-07-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1986 and spatial patterns for 1986. The report provides statistical distribution summaries of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. The data in the report are from the Acid Depositing System (ADS) for the statistical reporting of North American deposition data. Isopleth maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1986 annual, winter, and summer periods. The temporal pattern analyses use a subset of 30 sites over an 8-year (1979-1986) period and an expanded subset of 137 sites with greater spatial coverage over a 5-year (1982-1986) period. The 8-year period represents the longest period with wet deposition monitoring data unavailable that has a sufficient number of sites with data of known quality to allow a descriptive summary of annual temporal patterns. 19 refs., 105 figs., 29 tabs.

  7. Impaired extraction of speech rhythm from temporal modulation patterns in speech in developmental dyslexia

    PubMed Central

    Leong, Victoria; Goswami, Usha

    2014-01-01

    Dyslexia is associated with impaired neural representation of the sound structure of words (phonology). The “phonological deficit” in dyslexia may arise in part from impaired speech rhythm perception, thought to depend on neural oscillatory phase-locking to slow amplitude modulation (AM) patterns in the speech envelope. Speech contains AM patterns at multiple temporal rates, and these different AM rates are associated with phonological units of different grain sizes, e.g., related to stress, syllables or phonemes. Here, we assess the ability of adults with dyslexia to use speech AMs to identify rhythm patterns (RPs). We study 3 important temporal rates: “Stress” (~2 Hz), “Syllable” (~4 Hz) and “Sub-beat” (reduced syllables, ~14 Hz). 21 dyslexics and 21 controls listened to nursery rhyme sentences that had been tone-vocoded using either single AM rates from the speech envelope (Stress only, Syllable only, Sub-beat only) or pairs of AM rates (Stress + Syllable, Syllable + Sub-beat). They were asked to use the acoustic rhythm of the stimulus to identity the original nursery rhyme sentence. The data showed that dyslexics were significantly poorer at detecting rhythm compared to controls when they had to utilize multi-rate temporal information from pairs of AMs (Stress + Syllable or Syllable + Sub-beat). These data suggest that dyslexia is associated with a reduced ability to utilize AMs <20 Hz for rhythm recognition. This perceptual deficit in utilizing AM patterns in speech could be underpinned by less efficient neuronal phase alignment and cross-frequency neuronal oscillatory synchronization in dyslexia. Dyslexics' perceptual difficulties in capturing the full spectro-temporal complexity of speech over multiple timescales could contribute to the development of impaired phonological representations for words, the cognitive hallmark of dyslexia across languages. PMID:24605099

  8. Biodiversity, productivity and the temporal stability of productivity: patterns and processes

    E-print Network

    Wilsey, Brian J.

    LETTER Biodiversity, productivity and the temporal stability of productivity: patterns. Additionally, we tested whether biodiversity, productivity and temporal stability were similarly influenced that favoured unproductive species increased both biodiversity and temporal stability. Species interactions

  9. 1987 wet deposition temporal and spatial patterns in North America

    SciTech Connect

    Simpson, J.C.; Olsen, A.R.

    1990-03-01

    The focus of this report is on North American wet deposition temporal patterns from 1979 to 1987 and spatial patterns for 1987. The report investigates the patterns of annual precipitation-weighted average concentration and annual deposition for nine ion species: hydrogen, sulfate, nitrate, ammonium, calcium, chloride, sodium, potassium, and magnesium. Data are from the Acid Deposition System (ADS) for the statistical reporting of North American deposition data which includes the National Atmospheric Deposition Program/National Trends Network (NADP/NTN), the MAP3S precipitation chemistry network, the Utility Acid Precipitation Study Program (UAPSP), the Canadian Precipitation Monitoring Network (CAPMoN), and the daily and 4-weekly Acidic Precipitation in Ontario Study (APIOS-D and APIOS-C). Mosaic maps, based on surface estimation using kriging, display concentration and deposition spatial patterns of pH, hydrogen, sulfate, nitrate, ammonium, and calcium ion species for 1987 annual, winter, and summer periods. The temporal pattern analyses use a subset of 39 sites over a 9-year (1979--1987) period and an expanded subset of 140 sites with greater spatial coverage over a 6-year (1982--1987) period. 68 refs., 15 figs., 15 tabs.

  10. Acoustical Properties of Aircraft Noise Measured by Temporal and Spatial Factors

    NASA Astrophysics Data System (ADS)

    Fujii, K.; Soeta, Y.; Ando, Y.

    2001-03-01

    Acoustical properties of aircraft noise were investigated by means of temporal and spatial factors in sound fields based on the model of auditory-brain system (see reference [10]). The model consists of the autocorrelation and crosscorrelation mechanisms for sound signals arriving at two ears and the specialization of human cerebral hemisphere. There are four temporal factors extracted from the autocorrelation function (ACF): (1) sound energy ? (0); (2) effective duration of ACF, ?e; (3) delay time of the first peak, ?1; and (4) its amplitude ?1. From the interaural crosscorrelation function (IACF), three spatial factors are extracted as (1) magnitude of the interaural crosscorrelation IACC (2) interaural delay time at IACC,?IACC , and (3) width of the maximum peak of the IACF, WIACC. It is found that the acoustical properties are well represented by the factors extracted from the ACF and the IACF.

  11. Intermodal transfer in temporal discrimination. [of visual and acoustic stimuli duration

    NASA Technical Reports Server (NTRS)

    Warm, J. S.; Stutz, R. M.; Vassolo, P. A.

    1975-01-01

    This study determined if training for accuracy in temporal discrimination would transfer across sensory modalities. A fractionation method was used in which subjects bisected the durations of acoustic and visual signals at three standard intervals (6, 12, and 18 sec). Absolute error was the performance index. Half of the subjects were trained with acoustic stimuli and then tested in vision; the remainder were trained in vision and tested in audition. Similar negatively accelerated acquisition functions were noted for both modalities. Positive intermodal transfer, characterized by symmetry across modalities, was obtained at all standard durations. The results were considered to provide support for the notion that a common mechanism underlies temporal discriminations in different sensory systems.

  12. Planktivorous Fish Recognize Temporal Motion Patterns of Suspended Particles

    NASA Astrophysics Data System (ADS)

    Strickler, J. R.; Tsonis, A.

    2004-12-01

    Small planktivorous fish feed by selective captures of individual zooplankters. We realize that: 1) the predator, as well as the prey is suspended in the water column, which does not provide either with stable reference points; 2) the ambient flow field acts differently on the larger predators than on the much smaller prey; and 3) within the water column there are many suspended particles of lower nutritional value than the zooplankters represent. We investigated in the laboratory whether or not fish can distinguish between small targets moving with different swimming patterns, e.g. particles entrained passively in the ambient water flow versus entrained but actively swimming particles. We created in an aquarium computer-animated stimuli with motion patterns ranging from random to actual swimming motions of live animals. The results show that planktivorous fish can recognize temporal patterns in a visually homogeneous environment. Therefore, blue-water fish must process visual information similar to terrestrial animals processing auditory information.

  13. Recurrent Coupling Improves Discrimination of Temporal Spike Patterns

    PubMed Central

    Yuan, Chun-Wei; Leibold, Christian

    2012-01-01

    Despite the ubiquitous presence of recurrent synaptic connections in sensory neuronal systems, their general functional purpose is not well understood. A recent conceptual advance has been achieved by theories of reservoir computing in which recurrent networks have been proposed to generate short-term memory as well as to improve neuronal representation of the sensory input for subsequent computations. Here, we present a numerical study on the distinct effects of inhibitory and excitatory recurrence in a canonical linear classification task. It is found that both types of coupling improve the ability to discriminate temporal spike patterns as compared to a purely feed-forward system, although in different ways. For a large class of inhibitory networks, the network’s performance is optimal as long as a fraction of roughly 50% of neurons per stimulus is active in the resulting population code. Thereby the contribution of inactive neurons to the neural code is found to be even more informative than that of the active neurons, generating an inherent robustness of classification performance against temporal jitter of the input spikes. Excitatory couplings are found to not only produce a short-term memory buffer but also to improve linear separability of the population patterns by evoking more irregular firing as compared to the purely inhibitory case. As the excitatory connectivity becomes more sparse, firing becomes more variable, and pattern separability improves. We argue that the proposed paradigm is particularly well-suited as a conceptual framework for processing of sensory information in the auditory pathway. PMID:22586392

  14. Vehicle Speed Estimation using Acoustic Wave Patterns Volkan Cevher, Member, IEEE, Rama Chellappa, Fellow, IEEE

    E-print Network

    Cevher, Volkan

    acoustic sensor that records the vehicle's drive-by noise. The acoustic wave pattern is determined using engine RPM, the number of cylinders, and the vehicle's initial bearing, loudness and speed to form vehicles based on their axle detections by exploiting the tire noise generated by vehicles. They use signal

  15. Measurement resolution of noise directivity patterns from acoustic flight tests

    NASA Technical Reports Server (NTRS)

    Conner, David A.

    1989-01-01

    The measurement resolution of noise directivity patterns from acoustic flight tests was investigated. Directivity angle resolution is affected by the data reduction parameters, the aircraft velocity and flyover altitude, and by deviations of the aircraft from the desired flight path. Equations are developed which determine bounds for the lateral and longitudinal directivity angle resolution as a function of the nominal directivity angle. The equations are applied to a flight test data base and the effects of several flight conditions and data reduction parameters on the directivity angle resolution are presented. The maximum directivity angle resolution typically occurs when the aircraft is at or near the overhead position. In general, directivity angle resolution improves with decreasing velocity, increasing altitude, increasing sampling rate, decreasing block size, and decreasing block averages. Deviations from the desired ideal flight path will increase the resolution. For the flight experiment considered in this study, an average of two flyovers were required at each test condition to obtain an acceptable flight path. The ability of the pilot to maintain the flight track improved with decreasing altitude, decreasing velocity, and practice. Due to the prevailing wind conditions, yaw angles of as much as 20 deg were required to maintain the desired flight path.

  16. Disentangling the drivers of temporal and spatial biotic patterns

    NASA Astrophysics Data System (ADS)

    Belanger, C. L.

    2014-12-01

    Environmental changes in time and across space are multivariate, thus understanding the drivers of biotic responses to paleoclimate events requires the incorporation of multiple proxies and selection of the variables most associated with the biotic patterns. Here, two case studies, one examining paleoecological change leading into the Early Miocene warming and one examining global diversity patterns in modern bivalves, illustrate the utility of multivariate data sets for understanding biotic patterns. We create a multivariate time series of benthic foraminiferal faunal composition and environmental variables (?13C, ??13C, ?18O, ?15N, sediment grain size) from the Early Miocene Astoria Formation spanning ~18-20 mya. We then use multivariate statistics and maximum likelihood model selection to disentangle the potential drivers of the faunal changes. We find that d15N values and age are the most parsimonious correlates with major changes in foraminiferal composition, suggesting oxygenation is primarily affecting the foraminiferal community. Failure to include ?15N in the analysis still yields significant and supported relationships with ??13C, which would lead to the incorrect interpretation that the benthic foraminifera are responding primarily to organic carbon flux rather than oxygenation. Similarly, we examine the environmental factors associated with global diversity patterns. Using occurrence data for modern bivalves and a multivariate oceanographic data set, we identify the modern environmental factors most associated with diversity. However, inclusion of spatial variables in addition to environmental variables in the analysis reveals a well-supported relationship between proximity to diversity hotspots and diversity, suggesting historical processes also play a key role in diversity patterns. Because environmental variables can be coupled in time and in space, it is important to consider multiple environmental, temporal, and spatial variables, and their interactions, to disentangle the drivers of biotic patterns. Studies that incorporate multiple variables can be powerful tools for identifying the drivers of biotic patterns and projecting biotic responses to future climate changes.

  17. Finding Spatio-Temporal Patterns in Earth Science Data * Pang-Ning Tan+

    E-print Network

    Kumar, Vipin

    1 Finding Spatio-Temporal Patterns in Earth Science Data * Pang-Ning Tan+ Michael Steinbach+ Vipin-temporal patterns from Earth Science data. The data consists of time series measurements for various Earth science of the spatio-temporal issues. Earth Science data has strong seasonal components that need to be removed prior

  18. Tunable patterning of microparticles and cells using standing surface acoustic waves.

    PubMed

    Ding, Xiaoyun; Shi, Jinjie; Lin, Sz-Chin Steven; Yazdi, Shahrzad; Kiraly, Brian; Huang, Tony Jun

    2012-07-21

    We have developed an acoustic-based tunable patterning technique by which microparticles or cells can be arranged into reconfigurable patterns in microfluidic channels. In our approach, we use pairs of slanted-finger interdigital transducers (SFITs) to generate a tunable standing surface acoustic wave field, which in turn patterns microparticles or cells in one- or two-dimensional arrays inside the microfluidic channels--all without the assistance of fluidic flow. By tuning the frequency of the input signal applied to the SFITs, we have shown that the cell pattern can be controlled with tunability of up to 72%. This acoustic-based tunable patterning technique has the advantages of wide tunability, non-invasiveness, and ease of integration to lab-on-a-chip systems, and shall be valuable in many biological and colloidal studies. PMID:22648600

  19. Temporal patterns in adult salmon migration timing across southeast Alaska.

    PubMed

    Kovach, Ryan P; Ellison, Stephen C; Pyare, Sanjay; Tallmon, David A

    2015-05-01

    Pacific salmon migration timing can drive population productivity, ecosystem dynamics, and human harvest. Nevertheless, little is known about long-term variation in salmon migration timing for multiple species across broad regions. We used long-term data for five Pacific salmon species throughout rapidly warming southeast Alaska to describe long-term changes in salmon migration timing, interannual phenological synchrony, relationships between climatic variation and migratory timing, and to test whether long-term changes in migration timing are related to glaciation in headwater streams. Temporal changes in the median date of salmon migration timing varied widely across species. Most sockeye populations are migrating later over time (11 of 14), but pink, chum, and especially coho populations are migrating earlier than they did historically (16 of 19 combined). Temporal trends in duration and interannual variation in migration timing were highly variable across species and populations. The greatest temporal shifts in the median date of migration timing were correlated with decreases in the duration of migration timing, suggestive of a loss of phenotypic variation due to natural selection. Pairwise interannual correlations in migration timing varied widely but were generally positive, providing evidence for weak region-wide phenological synchrony. This synchrony is likely a function of climatic variation, as interannual variation in migration timing was related to climatic phenomenon operating at large- (Pacific decadal oscillation), moderate- (sea surface temperature), and local-scales (precipitation). Surprisingly, the presence or the absence of glaciers within a watershed was unrelated to long-term shifts in phenology. Overall, there was extensive heterogeneity in long-term patterns of migration timing throughout this climatically and geographically complex region, highlighting that future climatic change will likely have widely divergent impacts on salmon migration timing. Although salmon phenological diversity will complicate future predictions of migration timing, this variation likely acts as a major contributor to population and ecosystem resiliency in southeast Alaska. PMID:25482609

  20. Spatial and Temporal Patterns of Eastern Australia Subtropical Coral Communities

    PubMed Central

    Dalton, Steven J.; Roff, George

    2013-01-01

    Despite increases in the frequency and intensity of disturbances on coral reefs over the past few decades, the response of subtropical coral assemblages to climate change is poorly understood. To address this knowledge gap on Australian reefs and provide a baseline for future comparisons, we quantified spatial (10-100’s of kilometres) and temporal (decadal) patterns of benthic assemblages across a latitudinal gradient along the east Australian coastline (23.5° S to 31.5° S). Benthic community composition was quantified at six locations from the southern Great Barrier Reef, Queensland (Heron Reef, 23.5° S, 152° E) to northern New South Wales (31° S, 153.1° E) and at Lord Howe Island (31.5° S, 159.1° E). Our results indicate significant latitudinal differences in benthic assemblages, while community composition at some sites was more similar to those hundreds of kilometres away than to that of neighbouring reefs. A general trend was observed with decreasing cover of Acroporidae with increasing latitude, corresponding with an increasing cover of Pocilloporidae and Dendrophylliidae. Heron Reef comprised a high proportion of Acropora corals (43% total coral cover) and coralline algae (44%). In contrast, high-latitude reefs were dominated by mixed coral assemblages (0-52%) and high macroalgal cover (16-27%). Decadal comparisons of high-latitude reefs showed regional stability of benthic assemblages (9 out of 11 assemblages remained stable at > 75% similarity), during a period of warming oceans (0.15-0.24°C per decade). Such temporal stability suggests that eastern Australian subtropical communities may be more resistant than tropical reef communities that have experienced assembly shifts caused by perturbations associated with recent global climate change. Despite the clear differences in the structure of coral assemblages evident in our spatial surveys, we suggest that the temporal stability of high-latitude reefs may provide a limited refuge for tropical coral populations in an increasingly uncertain future. PMID:24058705

  1. Temporal and acoustic characteristics of Greek vowels produced by adults with cerebral palsy

    NASA Astrophysics Data System (ADS)

    Botinis, Antonis; Orfanidou, Ioanna; Fourakis, Marios; Fourakis, Marios

    2005-09-01

    The present investigation examined the temporal and spectral characteristics of Greek vowels as produced by speakers with intact (NO) versus cerebral palsy affected (CP) neuromuscular systems. Six NO and six CP native speakers of Greek produced the Greek vowels [i, e, a, o, u] in the first syllable of CVCV nonsense words in a short carrier phrase. Stress could be on either the first or second syllable. There were three female and three male speakers in each group. In terms of temporal characteristics, the results showed that: vowels produced by CP speakers were longer than vowels produced by NO speakers; stressed vowels were longer than unstressed vowels; vowels produced by female speakers were longer than vowels produced by male speakers. In terms of spectral characteristics the results showed that the vowel space of the CP speakers was smaller than that of the NO speakers. This is similar to the results recently reported by Liu et al. [J. Acoust. Soc. Am. 117, 3879-3889 (2005)] for CP speakers of Mandarin. There was also a reduction of the acoustic vowel space defined by unstressed vowels, but this reduction was much more pronounced in the vowel productions of CP speakers than NO speakers.

  2. Temporal patterns of solar eclipses on areostationary relay satellites

    NASA Astrophysics Data System (ADS)

    Romero, P.; Antolín, R.

    2014-09-01

    Mars Areostationary Relay Satellites are considered robust candidates to meet the telecommunications needs of the coming set of Mars science missions. Orbital station-keeping manoeuvres are required to compensate natural perturbations on the areostationary orbit. This paper deals on the pattern description of solar eclipses in the areostationary orbit to allow to test the constrain imposed by the impossibility to perform manoeuvres at the eclipse times. We present here the models used to characterize the two eclipse epochs around the spring and autumn equinoxes over a Martian year. In average, each eclipse season lasts 90 sols in eclipse with a daily maxima duration of about 1 h 18 min plus 2 min 54 s of penumbra. Temporal duration of solar eclipses with different values near to zero inclination and different satellite orbit nodes has been also analyzed.

  3. Spatio-Temporal Pattern of Saturn's Equatorial Oscillation

    NASA Technical Reports Server (NTRS)

    Flasar, F. M.; Schnider, P. J.; Marouf, E. A.; McGhee, C. A.; Kliore, A. J.; Rappaport, N. J.

    2010-01-01

    Recent ground-based and Cassini CIRS thermal-infrared data have characterized the spatial and temporal characteristics of an equatorial oscillation in the middle atmosphere of Saturn above the 100-mbar level. The CIRS data [I] indicated a pattern of warm and cold anomalies near the equator, stacked vertically in alternating fashion. The ground-based observations s2, although not having the altitude range or vertical resolution of the CIRS observations, covered several years and indicated an oscillation cycle of approx.15 years, roughly half of Saturn's year. In Earth's middle atmosphere, both the quasi-biennial (approx.26 months) and semi-annual equatorial oscillations have been extensively observed and studied (see e.g., [3]), These exhibit a pattern of alternating warmer and cooler zonal-mean temperatures with altitude, relative to those at subtropical latitudes. Consistent with the thermal wind equation, this is also associated with an alternating pattern of westerly and easterly zonal winds. Moreover, the pattern of winds and temperatures descends with time. Momentum deposition by damped vertically propagating waves is thought to play a key role m forcing both types of oscillation, and it can plausibly account for the descent. Here we report the direct observation of this descent in Saturn's equatorial atmosphere from Cassini radio occultation soundings in 2005 and 2009. The retrieved temperatures are consistent with a descent of 0.7 x the pressure scale height. The descent rate is related to the magnitude of the wave forcing, radiative damping, and induced meridional circulations. We discuss possible implications.

  4. Spatial and temporal patterns of hydrological extremes in Europe

    NASA Astrophysics Data System (ADS)

    Hall, Julia; Perdigão, Rui A. P.

    2015-04-01

    At a catchment scale, the hydrological characteristics of extreme events such as floods and droughts vary considerably across Europe. However, extreme events are also governed by large-scale physical processes that can influence the hydrological response of larger regions beyond catchment or national boundaries. To analyse such extreme events at a regional scale, a hydrological database for Europe, consisting of daily data from over 5000 stations, has been assembled. The database is a result of existing datasets of European coverage amended and complemented by a collaborative effort as part of a joint European flood research agreement based on the exchange of data, models, staff and expertise. The developed database allows an analysis of the influence of large scale drivers such as climate on the spatial patterns of floods and droughts across Europe. The timing of extreme events in Europe is a key variable in understanding the main processes governing flood and drought events. In this contribution, regional similarities and differences of hydrological extremes in Europe are analysed and the resulting characteristic spatio-temporal patterns of floods and droughts are presented separately and compared with one another.

  5. Theoretical Analysis of Shear Wave Interference Patterns by Means of Dynamic Acoustic Radiation Forces

    PubMed Central

    Hoyt, Kenneth

    2011-01-01

    Acoustic radiation forces associated with high intensity focused ultrasound stimulate shear wave propagation allowing shear wave speed and shear viscosity estimation of tissue structures. As wave speeds are meters per second, real time displacement tracking over an extend field-of-view using ultrasound is problematic due to very high frame rate requirements. However, two spatially separated dynamic external sources can stimulate shear wave motion leading to shear wave interference patterns. Advantages are shear waves can be imaged at lower frame rates and local interference pattern spatial properties reflect tissue’s viscoelastic properties. Here a theoretical analysis of shear wave interference patterns by means of dynamic acoustic radiation forces is detailed. Using a viscoelastic Green’s function analysis, tissue motion due to a pair of focused ultrasound beams and associated radiation forces are presented. Overall, this paper theoretically demonstrates shear wave interference patterns can be stimulated using dynamic acoustic radiation forces and tracked using conventional ultrasound imaging. PMID:21980318

  6. The Spatial and Temporal Pattern of Heavy Precipitation in Seoul

    NASA Astrophysics Data System (ADS)

    Lee, K. S.; Yu, J.; Im, J.; Jin, R.

    2014-12-01

    1.Introduction Combined with summer heavy rainfall and urbanization today's urban area face higher frequency of heavy rainfall with higher intensity in summer than before. Heavy rainfall in short time makes it low elevation area to be susceptible to more flooding than before. According to KMA it is announced as heavy rainfall warning whose precipitation amount is equal to or greater than 150mm per 12 hours. And sometimes, these rainfall events bring out severe disasters such as the case of flooding in Gangnam Station, Daechi Station and landslides which resulted in 20 person death in downtown Seoul on July 27th, 2011. Thus, the purpose of this study is to investigate the spatial and temporal pattern of heavy precipitation in Seoul. Ultimately it aims to contribute these results to the proper urban planning and management. 2. Materials and Methods In this study, the digital topograhic data and weather data in Seoul Metropolitan Area were used to figure out the spatial distribution of summer heavy rainfall. The precipitation data in summer (June to Sep.) season were used to detect the recent changes of temporal and spatial features from 1995 to 2014 (20 years) using Automatic Weather tation (AWS) data in Seoul Metropolitan Area. The precipitation amount in summer during the past 20 years has been on the rise but rainy days have barely changed?which reveals the daily precipitation intensity has increased. After deriving the characteristic of heavy rainfall, the relationship among precipitation, topography and land uses were interpreted and discussed. This study is to investigate the characteristics of flood prone area by focusing topographic and land use characteristics. Ultimately it contributes to prepare the guideline for flood preventive urban plannig.

  7. Niche Overlap and Temporal Activity Patterns of Social Wasps (Hymenoptera: Vespidae) in a Brazilian Cashew Orchard

    E-print Network

    Willig, Michael

    Niche Overlap and Temporal Activity Patterns of Social Wasps (Hymenoptera: Vespidae) in a Brazilian as a glucidic resource by wasps was quantified in an orchard to evaluate temporal overlap for a species-rich guild of social wasps and to determine if temporal partitioning within this guild reduces competition

  8. Behavioral/Systems/Cognitive Temporal-Pattern Recognition by Single Neurons in a

    E-print Network

    Behavioral/Systems/Cognitive Temporal-Pattern Recognition by Single Neurons in a Sensory Pathway these patterns is extracted by postsynaptic neurons. Similar to temporal coding by sensory neurons-cellpatchrecordingsfromELpneuronsinvivorevealedthreepatternsofinterpulseinterval(IPI)tuning:low-passneuronstuned to long intervals, high-pass neurons tuned to short intervals, and bandpass neurons tuned to intermediate

  9. The temporal pattern of vitellogenin synthesis in Drosophila grimshawi

    SciTech Connect

    Kambysellis, M.P.; Hatzopoulos, P.; Craddock, E.M. )

    1989-09-01

    The temporal pattern of protein production and, in particular, vitellogenin protein synthesis during the sexual maturation of Drosophila grimshawi females has been studied in vivo by briefly feeding the flies with 35S-methionine and 3H-amino acids. The overall level of incorporation was very low in young flies; it then progressively increased to reach a maximum with the onset of sexual maturity at 13-15 days. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analyses revealed three classes of proteins: those synthesized throughout the age spectrum, which constitute the majority of protein species; proteins synthesized primarily or only in young flies; and proteins synthesized only by the older flies. In this Drosophila species, the three vitellogenins (V1, V2, and V3) appeared to be synthesized in a two-phase pattern. In the first phase, small quantities of V1 and V2 were detected immunologically in the fat body and hemolymph of newly emerged and 1 day-old flies. These proteins did not accumulate in the hemolymph or the ovaries, apparently being unstable proteins. The second phase commenced in early vitellogenesis (7-9 days of age) with synthesis in the fat body of small quantities of V1 and V2, followed by V3 proteins. These proteins were secreted and accumulated in the hemolymph and 24 h later were found in the ovaries. Their quantities increased rapidly and a steady state of synthesis, release into the hemolymph, and uptake by the ovaries was reached by days 13-15. We have estimated that during the steady state of vitellogenin synthesis, a fly can synthesize in 24 h at least 152 micrograms of vitellogenins, which is more than 2% of its body weight, at an average rate of about 6.3 micrograms vitellogenins/h. About 2 micrograms of this are synthesized in the fat body, and about 4 micrograms in the ovaries.

  10. Characterizing temporal patterns in the swimming activity of Caenorhabditis elegans

    NASA Astrophysics Data System (ADS)

    Choi, Yeontaek; Jeon, Wonju; Kang, Seung-Ho; Lee, Sang-Hee; Chon, Tae-Soo

    2012-06-01

    The locomotion behavior of Caenorhabditis elegans has been studied extensively to understand the respective roles of neural control and biomechanics as well as the interaction between them. In the present study, we suggest a new approach to characterize the temporal patterns in the swimming behavior of the organism. The approach is based on the branching length similarity (BLS) entropy defined on a simple branching network consisting of a single node and branches. The organism's swimming activity is recorded using a charge-coupled device (CCD) camera for 3 h at a rate of 4 frames per second. In each frame, we place 13 points as nodes, those points being distributed at equal intervals along the organism's length. Thus, the organism is represented by 13 nodes and 12 edges between nodes. By using the nodes and edges, we construct two simple networks. One is formed by connecting the center point to all other points, and the other is generated from the angles between edges. The BLS entropy values are calculated as S L for the former network and S ? for the latter. We investigate the distributions of the S L and the S ? values in the phase space of S L — S ? and compare those with the values obtained from a simulated C. elegans generated by using randomly-moving chained particles along a certain angle. The comparison revealed distinctive features of the movement patterns of C. elegans during swimming activity. In addition, we briefly discuss the application of our method to bio-monitoring systems to capture behavioral changes of test organisms before and after chemical treatment at low concentrations.

  11. Innovations in motoneuron synchrony drive rapid temporal modulations in vertebrate acoustic signaling

    PubMed Central

    Chagnaud, Boris P.; Zee, Michele C.; Baker, Robert

    2012-01-01

    Rapid temporal modulation of acoustic signals among several vertebrate lineages has recently been shown to depend on the actions of superfast muscles. We hypothesized that such fast events, known to require synchronous activation of muscle fibers, would rely on motoneuronal properties adapted to generating a highly synchronous output to sonic muscles. Using intracellular in vivo recordings, we identified a suite of premotor network inputs and intrinsic motoneuronal properties synchronizing the oscillatory-like, simultaneous activation of superfast muscles at high gamma frequencies in fish. Motoneurons lacked spontaneous activity, firing synchronously only at the frequency of premotor excitatory input. Population-level motoneuronal output generated a spike-like, vocal nerve volley that directly determines muscle contraction rate and, in turn, natural call frequency. In the absence of vocal output, motoneurons showed low excitability and a weak afterhyperpolarization, leading to rapid accommodation in firing rate. By contrast, vocal activity was accompanied by a prominent afterhyperpolarization, indicating a dependency on network activity. Local injection of a GABAA receptor antagonist demonstrated the necessity of electrophysiologically and immunohistochemically confirmed inhibitory GABAergic input for motoneuronal synchrony and vocalization. Numerous transneuronally labeled motoneurons following single-cell neurobiotin injection together with electrophysiological collision experiments confirmed gap junctional coupling, known to contribute to synchronous activity in other neural networks. Motoneuronal synchrony at the premotor input frequency was maintained during differential recruitment of variably sized motoneurons. Differential motoneuron recruitment led, however, to amplitude modulation (AM) of vocal output and, hence, natural call AM. In summary, motoneuronal intrinsic properties, in particular low excitability, predisposed vocal motoneurons to the synchronizing influences of premotor inputs to translate a temporal input code into a coincident and extremely synchronous, but variable-amplitude, output code. We propose an analogous suite of neuronal properties as a key innovation underlying similarly rapid acoustic events observed among amphibians, reptiles, birds, and mammals. PMID:22423004

  12. Detection of Acoustic Temporal Fine Structure by Cochlear Implant Listeners: Behavioral Results and Computational Modeling

    PubMed Central

    Imennov, Nikita S.; Won, Jong Ho; Drennan, Ward R.; Jameyson, Elyse; Rubinstein, Jay T.

    2013-01-01

    A test of within-channel detection of acoustic temporal fine structure (aTFS) cues is presented. Eight cochlear implant listeners (CI) were asked to discriminate between two Schroeder-phase (SP) complexes using a two-alternative, forced-choice task. Because differences between the acoustic stimuli are primarily constrained to their aTFS, successful discrimination reflects a combination of the subjects’ perception of and the strategy’s ability to deliver aTFS cues. Subjects were mapped with single-channel Continuous Interleaved Sampling (CIS) and Simultaneous Analog Stimulation (SAS) strategies. To compare within- and across- channel delivery of aTFS cues, a 16-channel clinical HiRes strategy was also fitted. Throughout testing, SAS consistently outperformed the CIS strategy (p ? 0.002). For SP stimuli with F0 =50 Hz, the highest discrimination scores were achieved with the HiRes encoding, followed by scores with the SAS and the CIS strategies, respectively. At 200 Hz, single-channel SAS performed better than HiRes (p = 0.022), demonstrating that under a more challenging testing condition, discrimination performance with a single-channel analog encoding can exceed that of a 16-channel pulsatile strategy. To better understand the intermediate steps of discrimination, a biophysical model was used to examine the neural discharges evoked by the SP stimuli. Discrimination estimates calculated from simulated neural responses successfully tracked the behavioral performance trends of single-channel CI listeners. PMID:23333260

  13. Spatio-temporal patterns of precipitation in Serbia

    NASA Astrophysics Data System (ADS)

    Gocic, Milan; Trajkovic, Slavisa

    2014-08-01

    The monthly precipitation data from 29 synoptic stations for the period 1946-2012 were analyzed using a number of different multivariate statistical analysis methods to investigate the spatial variability and temporal patterns of precipitation across Serbia. R-mode principal component analysis was used to study the spatial variability of the precipitation. Three distinct sub-regions were identified by applying the agglomerative hierarchical cluster analysis to the two component scores: C1 includes the north and the northeast part of Serbia, while C2 includes the western part of Central Serbia and southwestern part of Serbia and C3 includes central, east, south and southeast part of Serbia. The analysis of the identified sub-regions indicated that the monthly and seasonal precipitation in sub-region C2 had the values above average, while C1 and C3 had the precipitation values under average. The analysis of the linear trend of the mean annual precipitation showed an increasing trend for the stations located in Serbia and three sub-regions. From the result of this analysis, one can plan land use, water resources and agricultural production in the region.

  14. The temporal patterns of disease severity and prevalence in schistosomiasis.

    PubMed

    Ciddio, Manuela; Mari, Lorenzo; Gatto, Marino; Rinaldo, Andrea; Casagrandi, Renato

    2015-03-01

    Schistosomiasis is one of the most widespread public health problems in the world. In this work, we introduce an eco-epidemiological model for its transmission and dynamics with the purpose of explaining both intra- and inter-annual fluctuations of disease severity and prevalence. The model takes the form of a system of nonlinear differential equations that incorporate biological complexity associated with schistosome's life cycle, including a prepatent period in snails (i.e., the time between initial infection and onset of infectiousness). Nonlinear analysis is used to explore the parametric conditions that produce different temporal patterns (stationary, endemic, periodic, and chaotic). For the time-invariant model, we identify a transcritical and a Hopf bifurcation in the space of the human and snail infection parameters. The first corresponds to the occurrence of an endemic equilibrium, while the latter marks the transition to interannual periodic oscillations. We then investigate a more realistic time-varying model in which fertility of the intermediate host population is assumed to seasonally vary. We show that seasonality can give rise to a cascade of period-doubling bifurcations leading to chaos for larger, though realistic, values of the amplitude of the seasonal variation of fertility. PMID:25833443

  15. The temporal patterns of disease severity and prevalence in schistosomiasis

    NASA Astrophysics Data System (ADS)

    Ciddio, Manuela; Mari, Lorenzo; Gatto, Marino; Rinaldo, Andrea; Casagrandi, Renato

    2015-03-01

    Schistosomiasis is one of the most widespread public health problems in the world. In this work, we introduce an eco-epidemiological model for its transmission and dynamics with the purpose of explaining both intra- and inter-annual fluctuations of disease severity and prevalence. The model takes the form of a system of nonlinear differential equations that incorporate biological complexity associated with schistosome's life cycle, including a prepatent period in snails (i.e., the time between initial infection and onset of infectiousness). Nonlinear analysis is used to explore the parametric conditions that produce different temporal patterns (stationary, endemic, periodic, and chaotic). For the time-invariant model, we identify a transcritical and a Hopf bifurcation in the space of the human and snail infection parameters. The first corresponds to the occurrence of an endemic equilibrium, while the latter marks the transition to interannual periodic oscillations. We then investigate a more realistic time-varying model in which fertility of the intermediate host population is assumed to seasonally vary. We show that seasonality can give rise to a cascade of period-doubling bifurcations leading to chaos for larger, though realistic, values of the amplitude of the seasonal variation of fertility.

  16. Spatial and Temporal Patterns of Global Onshore Wind Speed Distribution

    SciTech Connect

    Zhou, Yuyu; Smith, Steven J.

    2013-09-09

    Wind power, a renewable energy source, can play an important role in electrical energy generation. Information regarding wind energy potential is important both for energy related modeling and for decision-making in the policy community. While wind speed datasets with high spatial and temporal resolution are often ultimately used for detailed planning, simpler assumptions are often used in analysis work. An accurate representation of the wind speed frequency distribution is needed in order to properly characterize wind energy potential. Using a power density method, this study estimated global variation in wind parameters as fitted to a Weibull density function using NCEP/CFSR reanalysis data. The estimated Weibull distribution performs well in fitting the time series wind speed data at the global level according to R2, root mean square error, and power density error. The spatial, decadal, and seasonal patterns of wind speed distribution were then evaluated. We also analyzed the potential error in wind power estimation when a commonly assumed Rayleigh distribution (Weibull k = 2) is used. We find that the assumption of the same Weibull parameter across large regions can result in substantial errors. While large-scale wind speed data is often presented in the form of average wind speeds, these results highlight the need to also provide information on the wind speed distribution.

  17. The temporal patterns of disease severity and prevalence in schistosomiasis

    SciTech Connect

    Ciddio, Manuela; Gatto, Marino Casagrandi, Renato

    2015-03-15

    Schistosomiasis is one of the most widespread public health problems in the world. In this work, we introduce an eco-epidemiological model for its transmission and dynamics with the purpose of explaining both intra- and inter-annual fluctuations of disease severity and prevalence. The model takes the form of a system of nonlinear differential equations that incorporate biological complexity associated with schistosome's life cycle, including a prepatent period in snails (i.e., the time between initial infection and onset of infectiousness). Nonlinear analysis is used to explore the parametric conditions that produce different temporal patterns (stationary, endemic, periodic, and chaotic). For the time-invariant model, we identify a transcritical and a Hopf bifurcation in the space of the human and snail infection parameters. The first corresponds to the occurrence of an endemic equilibrium, while the latter marks the transition to interannual periodic oscillations. We then investigate a more realistic time-varying model in which fertility of the intermediate host population is assumed to seasonally vary. We show that seasonality can give rise to a cascade of period-doubling bifurcations leading to chaos for larger, though realistic, values of the amplitude of the seasonal variation of fertility.

  18. Generation of a reference radiation pattern of string instruments using automatic excitation and acoustic centering.

    PubMed

    Shabtai, Noam R; Behler, Gottfried; Vorländer, Michael

    2015-11-01

    Radiation patterns of musical instruments are important for the understanding of music perception in concert halls, and may be used to improve the plausibility of virtual acoustic systems. Many attempts have been performed to measure the spatial response of musical instruments using surrounding spherical microphone arrays with a limited number of microphones. This work presents a high-resolution spatial sampling of the radiation pattern of an electrically excited violin, and addresses technical problems that arise due to mechanical reasons of the excitation apparatus using acoustic centering. PMID:26627818

  19. Spatial and temporal patterns of subtidal and intertidal crabs excursions

    NASA Astrophysics Data System (ADS)

    Silva, A. C. F.; Boaventura, D. M.; Thompson, R. C.; Hawkins, S. J.

    2014-01-01

    Highly mobile predators such as fish and crabs are known to migrate from the subtidal zone to forage in the intertidal zone at high-tide. The extent and variation of these habitat linking movements along the vertical shore gradient have not been examined before for several species simultaneously, hence not accounting for species interactions. Here, the foraging excursions of Carcinus maenas (L.), Necora puber (Linnaeus, 1767) and Cancer pagurus (Linnaeus, 1758) were assessed in a one-year mark-recapture study on two replicated rocky shores in southwest U.K. A comparison between the abundance of individuals present on the shore at high-tide with those present in refuges exposed at low-tide indicated considerable intertidal migration by all species, showing strong linkage between subtidal and intertidal habitats. Estimates of population size based on recapture of marked individuals indicated that an average of ~ 4000 individuals combined for the three crab species, can be present on the shore during one tidal cycle. There was also a high fidelity of individuals and species to particular shore levels. Underlying mechanisms for these spatial patterns such as prey availability and agonistic interactions are discussed. Survival rates were estimated using the Cormack-Jolly-Seber model from multi-recapture analysis and found to be considerably high with a minimum of 30% for all species. Growth rates were found to vary intraspecifically with size and between seasons. Understanding the temporal and spatial variations in predation pressure by crabs on rocky shores is dependent on knowing who, when and how many of these commercially important crab species depend on intertidal foraging. Previous studies have shown that the diet of these species is strongly based on intertidal prey including key species such as limpets; hence intertidal crab migration could be associated with considerable impacts on intertidal assemblages.

  20. Temporal and spatial patterns of nitrate in a claypan soil

    SciTech Connect

    Ghidey, F.; Alberts, E.E.

    1999-03-01

    The temporal and spatial patterns of NO{sub 3}-N were studied on a 35-ha field located in the claypan soil region of north-central Missouri. Soil samples were collected from the 0- to 5-, 5- to 10-, and 10- to 15-cm depths and were analyzed for NO{sub 3}-N concentrations. Surface water samples from the field were collected for NO{sub 3}-N and NH{sub 4}-N analysis during each surface runoff event. Groundwater samples were also taken from the field well four times a year for 5 yr and analyzed for NO{sub 3}-N concentrations. The effects of topography, depth to claypan, soil pH, organic matter (OM) content, cation exchange capacity (CEC), and soil water content on the spatial distribution of NO{sub 3}-N concentration were also evaluated. Nitrate-N concentration in the 0- to 5-cm soil depth increased in the first few weeks following application, then decreased rapidly and was very low at harvest. During the study period, nitrate movement below the layer of fertilizer application was very low, and <5% of the total N applied in the soil was lost to surface runoff. Nitrate-N concentration in groundwater samples decreased by an average of 0.40 mg L{sup {minus}1} yr{sup {minus}1} from 1992 to 1996. The semivariograms did not exhibit strong spatial dependency except for the samples collected 1 and 4 wk after fertilizer applications in 1993 and 1995, respectively. Nitrate-N concentration was poorly correlated to soil water content and depth to claypan and relatively strongly correlated to elevation and soil pH.

  1. Sound temporal envelope and time-patterns of activity in the human auditory pathway : an fMRI study

    E-print Network

    Harms, Michael Patrick, 1972-

    2002-01-01

    The temporal envelope of sound strongly influences the intelligibility of speech, pattern analysis, and the grouping of sequential stimuli. This thesis examined the coding of sound temporal envelope in the time-patterns ...

  2. Acoustics and sociolinguistics: Patterns of communication in hearing impairing classrooms

    NASA Astrophysics Data System (ADS)

    McKellin, William; Shahin, Kimary; Jamieson, Janet; Hodgson, Murray; Pichora-Fuller, Kathleen

    2005-04-01

    In elementary school classes, noise during student led activities is often taken as evidence of successful interaction and learning. In this complex social environment of elementary school classrooms, acquisition of complex language and social skills-the focus of activities in early education-is expected to take place in hearing-hostile environments. Communication and language processing in these contexts requires interactive strategies, discourse forms, and syntactic structures different from the educationally desired forms used in acoustically advantageous environments. Recordings were made of the interaction of groups of students in grades 1-3, 5, and 7 during collaborative group work in their regular classrooms. Each student wore microphones at the ear level and head-mounted video cameras. Each group as a whole was also audio- and videotaped and noise level readings were recorded. Analysis of the acoustical and phonological properties of language heard by each student has demonstrated that the language variety used in these noisy and reverberant settings is similar to that of individuals with hearing impairments. This paper reports similarities between the syntactic structures and pragmatic strategies used by hearing impaired children and normally hearing children in noisy contexts. [Work supported by Peter Wall Institute for Advanced Studies, University of British Columbia.

  3. Theoretical calculation of the acoustic force on a patterned silicon wafer during megasonic cleaning

    E-print Network

    Deymier, Pierre

    Theoretical calculation of the acoustic force on a patterned silicon wafer during megasonic wafer immersed in water subjected to a megasonic beam. The method of calculation is based on a Green as a function of frequency and the angle the incident megasonic beam makes with the wafer surface

  4. Acoustic radiation patterns of mating calls of the tngara frog (Physalaemus pustuosus): Implications for multiple

    E-print Network

    Ryan, Michael J.

    Acoustic radiation patterns of mating calls of the túngara frog (Physalaemus pustuosus. In previous measurements of the horizontal directivity of mating calls of frogs, the signals were analyzed radiation of the mating calls of male túngara frogs Physalaemus pustulosus , along axes relevant to three

  5. ACOUSTIC IDENTIFICATION AND MEASUREMENT OF ACTIVITY PATTERNS OF WHITE GRUBS IN SOIL

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Activity patterns of Phyllophaga crinita (Burmeister), P. congrua (LeConte), P. crassissima (Blanchard), and Cyclocephala lurida (Bland) grubs were acoustically monitored in small pots of bluegrass, Poa arachnifera Torr, at varying and constant temperatures over multiple-day periods. Distinctive te...

  6. Acoustically Evoked Different Vibration Pattern Across the Width of the Cochlea Partition

    NASA Astrophysics Data System (ADS)

    Zha, Dingjun; Chen, Fangyi; Friderberg, Anders; Choudhury, Niloy; Nuttall, Alfred

    2011-11-01

    Using optical low coherence interferometry, the acoustically evoked vibration patterns of the basilar membrane (BM) and reticular lamina (RL) in the first turn of living guinea pigs were measured as function of the radial location. It was demonstrated that the vibration of the BM varied widely in amplitude, but little in phase across the width of the partition, while the RL had a different vibration pattern compared with the BM.

  7. Acoustic beam steering by light refraction: illustration with directivity patterns of a tilted volume photoacoustic source.

    PubMed

    Raetz, Samuel; Dehoux, Thomas; Perton, Mathieu; Audoin, Bertrand

    2013-12-01

    The symmetry of a thermoelastic source resulting from laser absorption can be broken when the direction of light propagation in an elastic half-space is inclined relatively to the surface. This leads to an asymmetry of the directivity patterns of both compressional and shear acoustic waves. In contrast to classical surface acoustic sources, the tunable volume source allows one to take advantage of the mode conversion at the surface to control the directivity of specific modes. Physical interpretations of the evolution of the directivity patterns with the increasing light angle of incidence and of the relations between the preferential directions of compressional- and shear-wave emission are proposed. In order to compare calculated directivity patterns with measurements of normal displacement amplitudes performed on plates, a procedure is proposed to transform the directivity patterns into pseudo-directivity patterns representative of the experimental conditions. The comparison of the theoretical with measured pseudo-directivity patterns demonstrates the ability to enhance bulk-wave amplitudes and to steer specific bulk acoustic modes by adequately tuning light refraction. PMID:25669249

  8. Temporal motifs reveal homophily, gender-specific patterns, and group talk in call sequences

    PubMed Central

    Kovanen, Lauri; Kaski, Kimmo; Kertész, János; Saramäki, Jari

    2013-01-01

    Recent studies on electronic communication records have shown that human communication has complex temporal structure. We study how communication patterns that involve multiple individuals are affected by attributes such as sex and age. To this end, we represent the communication records as a colored temporal network where node color is used to represent individuals’ attributes, and identify patterns known as temporal motifs. We then construct a null model for the occurrence of temporal motifs that takes into account the interaction frequencies and connectivity between nodes of different colors. This null model allows us to detect significant patterns in call sequences that cannot be observed in a static network that uses interaction frequencies as link weights. We find sex-related differences in communication patterns in a large dataset of mobile phone records and show the existence of temporal homophily, the tendency of similar individuals to participate in communication patterns beyond what would be expected on the basis of their average interaction frequencies. We also show that temporal patterns differ between dense and sparse neighborhoods in the network. Because also this result is independent of interaction frequencies, it can be seen as an extension of Granovetter’s hypothesis to temporal networks. PMID:24145424

  9. Temporal motifs reveal homophily, gender-specific patterns, and group talk in call sequences.

    PubMed

    Kovanen, Lauri; Kaski, Kimmo; Kertész, János; Saramäki, Jari

    2013-11-01

    Recent studies on electronic communication records have shown that human communication has complex temporal structure. We study how communication patterns that involve multiple individuals are affected by attributes such as sex and age. To this end, we represent the communication records as a colored temporal network where node color is used to represent individuals' attributes, and identify patterns known as temporal motifs. We then construct a null model for the occurrence of temporal motifs that takes into account the interaction frequencies and connectivity between nodes of different colors. This null model allows us to detect significant patterns in call sequences that cannot be observed in a static network that uses interaction frequencies as link weights. We find sex-related differences in communication patterns in a large dataset of mobile phone records and show the existence of temporal homophily, the tendency of similar individuals to participate in communication patterns beyond what would be expected on the basis of their average interaction frequencies. We also show that temporal patterns differ between dense and sparse neighborhoods in the network. Because also this result is independent of interaction frequencies, it can be seen as an extension of Granovetter's hypothesis to temporal networks. PMID:24145424

  10. Pattern recognition and tomography using crosswell acoustic data

    SciTech Connect

    Albright, J.N.; Terry, D.A.; Bradley, C.R.

    1985-01-01

    Measurements of the travel time of acoustic signals transmitted between wells at the Department of Energy Multi-Well Experiment site (MWX) near Rifle, Colorado, are processed and analyzed. Interpretations relevant to sand geometry and continuity have proved possible through inspection of the signal travel time plotted against the coordinates of transmitter and receiver wellbore positions, or against the depth of receiver and ray path inclination. The continuity of several sands between wells is corroborated. A major lenticular sand terminating between wells could be inferred. To explore the possible distortions in tomographic images derived from crosswell data, synthetic tomographs are constructed from computed travel times of signals transmitted through idealized models from stratigraphy thought to be present at the MWX site. The synthetic tomographs, although preserving the general character of the model stratigraphy, are distorted enough that detailed interpretations are not possible. Horizontal distortions predominate in reconstructions of flat-lying stratigraphy. 7 refs., 9 figs.

  11. A model for optimizing file access patterns using spatio-temporal parallelism

    SciTech Connect

    Boonthanome, Nouanesengsy; Patchett, John; Geveci, Berk; Ahrens, James; Bauer, Andy; Chaudhary, Aashish; Miller, Ross G.; Shipman, Galen M.; Williams, Dean N.

    2013-01-01

    For many years now, I/O read time has been recognized as the primary bottleneck for parallel visualization and analysis of large-scale data. In this paper, we introduce a model that can estimate the read time for a file stored in a parallel filesystem when given the file access pattern. Read times ultimately depend on how the file is stored and the access pattern used to read the file. The file access pattern will be dictated by the type of parallel decomposition used. We employ spatio-temporal parallelism, which combines both spatial and temporal parallelism, to provide greater flexibility to possible file access patterns. Using our model, we were able to configure the spatio-temporal parallelism to design optimized read access patterns that resulted in a speedup factor of approximately 400 over traditional file access patterns.

  12. Assessing the value of information in climber's guidebooks to derive spatio-temporal rockfall patterns

    NASA Astrophysics Data System (ADS)

    Temme, A. J. A. M.

    2012-04-01

    Rockfall rates in mountain ranges are expensive to measure over large spatial scales, mainly due to the inaccessibility of mountainous terrain. Existing methods to measure rockfall include acoustic methods (listening to the rock's impact or creation by frost weathering) , spectral methods (looking at the colour of mountain faces to determine their freshness and by extension the time since last rockfall) and volumetric methods (measuring the volume that fell). These methods, especially in combination, have allowed researchers to quantitatively derive rates (and distribution of rates over time) of rockfall for several well studied locations. However, the small spatial support of these methods means that results are only valid for small well-studied locations. This is a problem when we want to derive baseline information on rockfall rates over entire mountain chains and ranges - which is important to study their temporal distribution and their relation with climate change. This contribution explores the potential of information contained in climber's guidebooks to derive qualitative rockfall rates with large spatial and temporal coverage. Climber's guidebooks have been published since the early 1900's, giving prospective mountaineers strongly codified information about routes and conditions expected along the way. The information about the looseness of rocks, which is clearly important for climbers from a safety perspective, may also be useful to link to rockfall rates. I have used a series of guidebooks published at irregular intervals for the Bernese Oberland in Switzerland to study the change in descriptions of looseness of rocks for a number of famous climbing routes. These routes were selected because of the opportunity to complement information in guidebooks with other (visual and written) sources of information. Results indicate that descriptions of looseness of rock can be used to derive a qualitative pattern of rockfall, especially over larger spatial scales. The value of the information is also valuable as a link to temporal changes in rockfall rates, but this use is hampered by the fact that text is sometimes copied between successive guidebooks without a stringent reassessment of actual conditions on the route.

  13. Acoustic Processing of Temporally Modulated Sounds in Infants: Evidence from a Combined Near-Infrared Spectroscopy and EEG Study

    PubMed Central

    Telkemeyer, Silke; Rossi, Sonja; Nierhaus, Till; Steinbrink, Jens; Obrig, Hellmuth; Wartenburger, Isabell

    2010-01-01

    Speech perception requires rapid extraction of the linguistic content from the acoustic signal. The ability to efficiently process rapid changes in auditory information is important for decoding speech and thereby crucial during language acquisition. Investigating functional networks of speech perception in infancy might elucidate neuronal ensembles supporting perceptual abilities that gate language acquisition. Interhemispheric specializations for language have been demonstrated in infants. How these asymmetries are shaped by basic temporal acoustic properties is under debate. We recently provided evidence that newborns process non-linguistic sounds sharing temporal features with language in a differential and lateralized fashion. The present study used the same material while measuring brain responses of 6 and 3?month old infants using simultaneous recordings of electroencephalography (EEG) and near-infrared spectroscopy (NIRS). NIRS reveals that the lateralization observed in newborns remains constant over the first months of life. While fast acoustic modulations elicit bilateral neuronal activations, slow modulations lead to right-lateralized responses. Additionally, auditory-evoked potentials and oscillatory EEG responses show differential responses for fast and slow modulations indicating a sensitivity for temporal acoustic variations. Oscillatory responses reveal an effect of development, that is, 6 but not 3?month old infants show stronger theta-band desynchronization for slowly modulated sounds. Whether this developmental effect is due to increasing fine-grained perception for spectrotemporal sounds in general remains speculative. Our findings support the notion that a more general specialization for acoustic properties can be considered the basis for lateralization of speech perception. The results show that concurrent assessment of vascular based imaging and electrophysiological responses have great potential in the research on language acquisition. PMID:21716574

  14. Temporal Patterns of Medications Dispensed to Children and Adolescents in a National Insured Population

    E-print Network

    Olson, Karen L.

    This study aimed to comprehensively describe prevalence and temporal dispensing patterns for medications prescribed to children and adolescents in the United States. Participants were 1.6 million children (49% female) under ...

  15. Aligning Temporal Data by Sentinel Events: Discovering Patterns in Electronic Health Records

    E-print Network

    Shneiderman, Ben

    Aligning Temporal Data by Sentinel Events: Discovering Patterns in Electronic Health Records Taowei of validity of the data. Display of patient histories aligned on sentinel events (such as a first heart attack

  16. Speech comprehension is correlated with temporal response patterns recorded from auditory cortex

    E-print Network

    Ahissar, Ehud

    Speech comprehension is correlated with temporal response patterns recorded from auditory cortex, Hebrew University, Jerusalem 91905, Israel; ¶Department of Speech Technology, Institute for Language and Speech Processing, 15125 Maroussi, Greece; **The Keck Center for Integrative Neurosciences, University

  17. General asymmetric neutral networks and structure design by genetic algorithms: A learning rule for temporal patterns

    SciTech Connect

    Bornholdt, S.; Graudenz, D.

    1993-07-01

    A learning algorithm based on genetic algorithms for asymmetric neural networks with an arbitrary structure is presented. It is suited for the learning of temporal patterns and leads to stable neural networks with feedback.

  18. Reconstruction of Missing Data in Social Networks Based on Temporal Patterns of Interactions

    E-print Network

    Ferguson, Thomas S.

    Reconstruction of Missing Data in Social Networks Based on Temporal Patterns of Interactions Alexey in the series of interaction events between agents in a social network. We then develop a reconstruction model results to the Los Angeles gang network. Keywords: Social networks, temporal dependence of events, missing

  19. Acoustic cue selection and discrimination under degradation: differential contributions of the inferior parietal and posterior temporal cortices.

    PubMed

    Scharinger, Mathias; Henry, Molly J; Obleser, Jonas

    2015-02-01

    Auditory categorization is a vital skill for perceiving the acoustic environment. Categorization depends on the discriminability of the sensory input as well as on the ability of the listener to adaptively make use of the relevant features of the sound. Previous studies on categorization have focused either on speech sounds when studying discriminability or on visual stimuli when assessing optimal cue utilization. Here, by contrast, we examined neural sensitivity to stimulus discriminability and optimal cue utilization when categorizing novel, non-speech auditory stimuli not affected by long-term familiarity. In a functional magnetic resonance imaging (fMRI) experiment, listeners categorized sounds from two category distributions, differing along two acoustic dimensions: spectral shape and duration. By introducing spectral degradation after the first half of the experiment, we manipulated both stimulus discriminability and the relative informativeness of acoustic cues. Degradation caused an overall decrease in discriminability based on spectral shape, and therefore enhanced the informativeness of duration. A relative increase in duration-cue utilization was accompanied by increased activity in left parietal cortex. Further, discriminability modulated right planum temporale activity to a higher degree when stimuli were spectrally degraded than when they were not. These findings provide support for separable contributions of parietal and posterior temporal areas to perceptual categorization. The parietal cortex seems to support the selective utilization of informative stimulus cues, while the posterior superior temporal cortex as a primarily auditory brain area supports discriminability particularly under acoustic degradation. PMID:25481793

  20. Pattern formation on the wall of acoustically driven gas bubble

    NASA Astrophysics Data System (ADS)

    Maksimov, A. O.; Leighton, T. G.

    2012-09-01

    An air bubble driven by ultrasound can become shape-unstable through a parametric instability. Above the critical driven pressure threshold for shape oscillations, which is minimal at the resonance of the breathing (radial) mode, regular patterns of surface waves are observed on the bubble wall. The existing theoretical models for bubble dynamics cannot explain the selection in the growth of the initial fluctuation distortions and the conditions for the realization of different shape structures. The proposed explanation is based on the consideration of a three-wave resonant interaction between the distortion modes. Corrections to the dynamical equations have been derived. Steady-state solutions of these equations describe the formation of a regular structure. A basic feature of pattern formation, which is applicable for the interpretation of preferred patterns of parametrically unstable Faraday ripples on the sphere, is that these structures have symmetry of point subgroups including the symmetries of Platonic solids. Our predictions are confirmed by images of patterns observed on the bubble wall.

  1. Retrieving controlled motion parameters using two speckle pattern analysis techniques: spatiotemporal correlation and the temporal history speckle pattern.

    PubMed

    Nassif, Rana; Abou Nader, Christelle; Pellen, Fabrice; Le Brun, Guy; Abboud, Marie; Le Jeune, Bernard

    2013-11-01

    This paper presents simulation of speckle activity through controlling a moving plate. We present two procedures to extract the initial movement frequency and amplitude, either through correlation calculus or through processing the temporal history of the speckle pattern. We compare and discuss these two methods in terms of efficiency and the ability to retrieve motion parameters. The correlation technique seems to be more suitable for monitoring biospeckle activity as it provides more reliable parameter estimation than the temporal history of the speckle pattern. The evolution of temporal history of the speckle pattern parameters and their response sensibility with amplitude and frequency variations have been studied and quantified. Briers contrast appears to depend only on movement amplitude, whereas inertia moment varies with amplitude and frequency. PMID:24216659

  2. Data-Driven Rule Mining and Representation of Temporal Patterns in Physiological Sensor Data.

    PubMed

    Banaee, Hadi; Loutfi, Amy

    2015-09-01

    Mining and representation of qualitative patterns is a growing field in sensor data analytics. This paper leverages from rule mining techniques to extract and represent temporal relation of prototypical patterns in clinical data streams. The approach is fully data-driven, where the temporal rules are mined from physiological time series such as heart rate, respiration rate, and blood pressure. To validate the rules, a novel similarity method is introduced, that compares the similarity between rule sets. An additional aspect of the proposed approach has been to utilize natural language generation techniques to represent the temporal relations between patterns. In this study, the sensor data in the MIMIC online database was used for evaluation, in which the mined temporal rules as they relate to various clinical conditions (respiratory failure, angina, sepsis, …) were made explicit as a textual representation. Furthermore, it was shown that the extracted rule set for any particular clinical condition was distinct from other clinical conditions. PMID:26340684

  3. Spatial and Temporal Patterns of Tidal Dissipation in Synchronous Satellites

    NASA Technical Reports Server (NTRS)

    Bills, Bruce G.; Aharonson, Oded

    2003-01-01

    Tidal heating is an important energy source for several solar system bodies, and there is a wide-spread perception that the pattern of surface heat flow is diagnostic of internal structure. We wish to clarify that situation. Our analysis depends upon two important assumptions: First, that heat transport is dominated by conduction. Second, that the body can be modeled by a sequence of spherically symmetric layers, each with a linear visco-elastic rheology. Under these assumptions, surface heat flow patterns in tidally dominated satellites will reflect radially integrated dissipation patterns. For synchronously rotating satellites with zero obliquity, this pattern depends quite strongly on orbital eccentricity but relatively little on purely radial variations in internal structure. The total amount of heat generated within the body does depend sensitively on internal structure, but the spatial pattern is rather insensitive to structure, especially at low orbital eccentricities.

  4. Dexterous acoustic trapping and patterning of particles assisted by phononic crystal plate

    SciTech Connect

    Wang, Tian; Ke, Manzhu Xu, Shengjun; Feng, Junheng; Qiu, Chunyin; Liu, Zhengyou

    2015-04-20

    In this letter, we present experimental demonstration of multi-particles trapping and patterning by the artificially engineered acoustic field of phononic crystal plate. Polystyrene particles are precisely trapped and patterned in two dimensional arrays, for example, the square, triangular, or quasi-periodic arrays, depending on the structures of the phononic crystal plates with varying sub-wavelength holes array. Analysis shows that the enhanced acoustic radiation force, induced by the resonant transmission field highly localized near the sub-wavelength apertures, accounts for the particles self-organizing. It can be envisaged that this kind of simple design of phononic crystal plates would pave an alternative route for self-assembly of particles and may be utilized in the lab-on-a-chip devices.

  5. Seasonal forcing drives spatio-temporal pattern formation in rabies epidemics

    E-print Network

    Seasonal forcing drives spatio-temporal pattern formation in rabies epidemics Niels v. Festenberg1 of rabies dispersal. We reduce an established individual-based high- detail model down to a deterministic of epidemic wave fronts. Keywords: pattern formation, epidemics, rabies, seasonal forcing AMS classification

  6. Finding Temporal Patterns in Noisy Longitudinal Data: A Study in Diabetic

    E-print Network

    Coenen, Frans

    Finding Temporal Patterns in Noisy Longitudinal Data: A Study in Diabetic Retinopathy Vassiliki is a large longitudinal patient database collected as part of a diabetic retinopathy screening programme. The diabetic retinopathy application, the data warehousing and cleaning process, and the frequent pattern

  7. A cortex-like learning machine for temporal hierarchical pattern clustering, detection, and recognition

    E-print Network

    Rathinam, Muruhan

    network Learning machine Unsupervised learning Clustering Pattern recognition Spiking neuron Dendritic,51,5,24], associative memories [36,67,48,1,62,65], support vector machines [66,9,57], spiking neural networks [41A cortex-like learning machine for temporal hierarchical pattern clustering, detection

  8. Cultural and environmental influences on temporal-spectral development patterns of corn and soybeans

    NASA Technical Reports Server (NTRS)

    Crist, E. P.

    1982-01-01

    A technique for evaluating crop temporal-spectral development patterns is described and applied to the analysis of cropping practices and environmental conditions as they affect reflectance characteristics of corn and soybean canopies. Typical variations in field conditions are shown to exert significant influences on the spectral development patterns, and thereby to affect the separability of the two crops.

  9. Measurement of non-monotonous phase changes in temporal speckle pattern interferometry using a correlation method without a temporal carrier

    NASA Astrophysics Data System (ADS)

    Tendela, Lucas P.; Galizzi, Gustavo E.; Federico, Alejandro; Kaufmann, Guillermo H.

    2015-10-01

    Recently, a phase evaluation method was proposed to measure nanometric displacements by means of digital speckle pattern interferometry when the phase change introduced by the deformation is in the range [0,?) rad. This method is based on the evaluation of a correlation coefficient between two speckle interferograms generated by both deformation states of the object. In this paper, we present a novel technique to measure non-monotonous displacements in temporal speckle pattern interferometry using a correlation method without a temporal carrier. In this approach, the sign ambiguity is resolved automatically due to the introduction of a function that determines the correct sign of the displacement between two consecutive speckle interferograms. The rms phase errors introduced by the proposed method are determined using computer-simulated speckle interferograms. An application of the phase retrieval method to process experimental data is also presented.

  10. Temporal divergence in cropping pattern and its implications on geospatial drought assessment

    E-print Network

    Murthy, C S; Kumar, M Naresh; Roy, P S

    2015-01-01

    Time series data on cropping pattern at disaggregated level were analysed and its implications on geospatial drought assessment were demonstrated. An index of Cropping Pattern Dissimilarity (CP-DI) between a pair of years, developed in this study, proved that the cropping pattern of a year has a higher degree of similarity with that of recent past years only and tends to be dissimilar with longer time difference. The temporal divergence in cropping pattern has direct implications on geospatial approach of drought assessment, in which, time series NDVI data are compared for drought interpretation. It was found that, seasonal NDVI pro?les of drought year and normal year did not show any anomaly when the cropping patterns were dissimilar and two normal years having dissimilar cropping pattern showed different NDVI profiles. Therefore, it is suggested that such temporal comparisons of NDVI are better restricted to recent past years to achieve more objective interpretation.

  11. Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves.

    PubMed

    Collins, David J; Morahan, Belinda; Garcia-Bustos, Jose; Doerig, Christian; Plebanski, Magdalena; Neild, Adrian

    2015-01-01

    In single-cell analysis, cellular activity and parameters are assayed on an individual, rather than population-average basis. Essential to observing the activity of these cells over time is the ability to trap, pattern and retain them, for which previous single-cell-patterning work has principally made use of mechanical methods. While successful as a long-term cell-patterning strategy, these devices remain essentially single use. Here we introduce a new method for the patterning of multiple spatially separated single particles and cells using high-frequency acoustic fields with one cell per acoustic well. We characterize and demonstrate patterning for both a range of particle sizes and the capture and patterning of cells, including human lymphocytes and red blood cells infected by the malarial parasite Plasmodium falciparum. This ability is made possible by a hitherto unexplored regime where the acoustic wavelength is on the same order as the cell dimensions. PMID:26522429

  12. Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves

    NASA Astrophysics Data System (ADS)

    Collins, David J.; Morahan, Belinda; Garcia-Bustos, Jose; Doerig, Christian; Plebanski, Magdalena; Neild, Adrian

    2015-11-01

    In single-cell analysis, cellular activity and parameters are assayed on an individual, rather than population-average basis. Essential to observing the activity of these cells over time is the ability to trap, pattern and retain them, for which previous single-cell-patterning work has principally made use of mechanical methods. While successful as a long-term cell-patterning strategy, these devices remain essentially single use. Here we introduce a new method for the patterning of multiple spatially separated single particles and cells using high-frequency acoustic fields with one cell per acoustic well. We characterize and demonstrate patterning for both a range of particle sizes and the capture and patterning of cells, including human lymphocytes and red blood cells infected by the malarial parasite Plasmodium falciparum. This ability is made possible by a hitherto unexplored regime where the acoustic wavelength is on the same order as the cell dimensions.

  13. Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves

    PubMed Central

    Collins, David J.; Morahan, Belinda; Garcia-Bustos, Jose; Doerig, Christian; Plebanski, Magdalena; Neild, Adrian

    2015-01-01

    In single-cell analysis, cellular activity and parameters are assayed on an individual, rather than population-average basis. Essential to observing the activity of these cells over time is the ability to trap, pattern and retain them, for which previous single-cell-patterning work has principally made use of mechanical methods. While successful as a long-term cell-patterning strategy, these devices remain essentially single use. Here we introduce a new method for the patterning of multiple spatially separated single particles and cells using high-frequency acoustic fields with one cell per acoustic well. We characterize and demonstrate patterning for both a range of particle sizes and the capture and patterning of cells, including human lymphocytes and red blood cells infected by the malarial parasite Plasmodium falciparum. This ability is made possible by a hitherto unexplored regime where the acoustic wavelength is on the same order as the cell dimensions. PMID:26522429

  14. Patterns of altered functional connectivity in mesial temporal lobe epilepsy

    PubMed Central

    Pittau, Francesca; Grova, Christophe; Moeller, Friederike; Dubeau, François; Gotman, Jean

    2013-01-01

    Summary Purpose In mesial temporal lobe epilepsy (MTLE) the epileptogenic area is confined to the mesial temporal lobe, but other cortical and subcortical areas are also affected and cognitive and psychiatric impairments are usually documented. Functional connectivity methods are based on the correlation of the blood oxygen level dependent (BOLD) signal between brain regions, which exhibit consistent and reproducible functional networks from resting state data. The aim of this study is to compare functional connectivity of patients with MTLE during the interictal period with healthy subjects. We hypothesize that patients show reduced functional connectivity compared to controls, the interest being to determine which regions show this reduction. Methods We selected electroencephalography–functional magnetic resonance imaging (EEG-fMRI) resting state data without EEG spikes from 16 patients with right and 7 patients with left MTLE. EEG-fMRI resting state data of 23 healthy subjects matched for age, sex, and manual preference were selected as controls. Four volumes of interest in the left and right amygdalae and hippocampi (LA, RA, LH, and RH) were manually segmented in the anatomic MRI of each subject. The averaged BOLD time course within each volume of interest was used to detect brain regions with BOLD signal correlated with it. Group differences between patients and controls were estimated. Key Findings In patients with right MTLE, group difference functional connectivity maps (RMTLE – controls) showed for RA and RH decreased connectivity with the brain areas of the default mode network (DMN), the ventromesial limbic prefrontal regions, and contralateral mesial temporal structures; and for LA and LH, decreased connectivity with DMN and contralateral hippocampus. Additional decreased connectivity was found between LA and pons and between LH and ventromesial limbic prefrontal structures. In patients with left MTLE, functional connectivity maps (LMTLE – controls) showed for LA and LH decreased connectivity with DMN, contralateral hippocampus, and bilateral ventromesial limbic prefrontal regions; no change in connectivity was detected for RA; and for RH, there was decreased connectivity with DMN, bilateral ventromesial limbic prefrontal regions, and contralateral amygdala and hippocampus. Significance In unilateral MTLE, amygdala and hippocampus on the affected and to a lesser extent on the healthy side are less connected, and are also less connected with the dopaminergic mesolimbic and the DMNs. Changes in functional connectivity between mesial temporal lobe structures and these structures may explain cognitive and psychiatric impairments often found in patients with MTLE. PMID:22578020

  15. Acoustic correlates of English rhythmic patterns for American versus Japanese speakers.

    PubMed

    Mori, Yoko; Hori, Tomoko; Erickson, Donna

    2014-01-01

    This study investigates acoustic correlates of English rhythmic patterns for 20 American English speakers (AS) and 42 Japanese learners of English (JS). The results indicate that for AS in an English sentence where monosyllabic content and function words alternate, the vowels in content words are over twice as long as those in function words, resulting in alternating long-short vowels. In contrast, the JS show no stress-related duration control and realize a similar rhythmic pattern mostly through recursive high-low fundamental frequency (F0). In a sentence with a sequence of content words in which 4 stressed syllables occur successively, the AS show recursion of strong-weak syllables by means of F0, intensity and first formant, whereas JS show inconsistent stress patterns. These results indicate that the AS apply different strategies for implementing rhythmic alternation depending on sentence stress patterns, and these strategies are different from those of JS. PMID:25227394

  16. Learning Temporal Patterns of Risk in a Predator-Diverse Environment

    PubMed Central

    Bosiger, Yoland J.; Lonnstedt, Oona M.; McCormick, Mark I.; Ferrari, Maud C. O.

    2012-01-01

    Predation plays a major role in shaping prey behaviour. Temporal patterns of predation risk have been shown to drive daily activity and foraging patterns in prey. Yet the ability to respond to temporal patterns of predation risk in environments inhabited by highly diverse predator communities, such as rainforests and coral reefs, has received surprisingly little attention. In this study, we investigated whether juvenile marine fish, Pomacentrus moluccensis (lemon damselfish), have the ability to learn to adjust the intensity of their antipredator response to match the daily temporal patterns of predation risk they experience. Groups of lemon damselfish were exposed to one of two predictable temporal risk patterns for six days. “Morning risk” treatment prey were exposed to the odour of Cephalopholis cyanostigma (rockcod) paired with conspecific chemical alarm cues (simulating a rockcod present and feeding) during the morning, and rockcod odour only in the evening (simulating a rockcod present but not feeding). “Evening risk” treatment prey had the two stimuli presented to them in the opposite order. When tested individually for their response to rockcod odour alone, lemon damselfish from the morning risk treatment responded with a greater antipredator response intensity in the morning than in the evening. In contrast, those lemon damselfish previously exposed to the evening risk treatment subsequently responded with a greater antipredator response when tested in the evening. The results of this experiment demonstrate that P. moluccensis have the ability to learn temporal patterns of predation risk and can adjust their foraging patterns to match the threat posed by predators at a given time of day. Our results provide the first experimental demonstration of a mechanism by which prey in a complex, multi-predator environment can learn and respond to daily patterns of predation risk. PMID:22493699

  17. Effective beam pattern of the Blainville's beaked whale (Mesoplodon densirostris) and implications for passive acoustic monitoring.

    PubMed

    Shaffer, Jessica Ward; Moretti, David; Jarvis, Susan; Tyack, Peter; Johnson, Mark

    2013-03-01

    The presence of beaked whales in mass-strandings coincident with navy maneuvers has prompted the development of methods to detect these cryptic animals. Blainville's beaked whales, Mesoplodon densirostris, produce distinctive echolocation clicks during long foraging dives making passive acoustic detection a possibility. However, performance of passive acoustic monitoring depends upon the source level, beam pattern, and clicking behavior of the whales. In this study, clicks recorded from Digital acoustic Tags (DTags) attached to four M. densirostris were linked to simultaneous recordings from an 82-hydrophone bottom-mounted array to derive the source level and beam pattern of the clicks, as steps towards estimating their detectability. The mean estimated on-axis apparent source level for the four whales was 201 dBrms97. The mean 3?dB beamwidth and directivity index, estimated from sequences of clicks directed towards the far-field hydrophones, were 13° and 23?dB, respectively. While searching for prey, Blainville's beaked whales scan their heads horizontally at a mean rate of 3.6°/s over an angular range of some +/-10°. Thus, while the DI indicates a narrow beam, the area of ensonification over a complete foraging dive is large given the combined effects of body and head movements associated with foraging. PMID:23464046

  18. Temporal patterns of gene expression during calyx of held development.

    PubMed

    Kolson, Douglas R; Wan, Jun; Wu, Jonathan; Dehoff, Marlin; Brandebura, Ashley N; Qian, Jiang; Mathers, Peter H; Spirou, George A

    2016-02-01

    Relating changes in gene expression to discrete developmental events remains an elusive challenge in neuroscience, in part because most neural territories are comprised of multiple cell types that mature over extended periods of time. The medial nucleus of the trapezoid body (MNTB) is an attractive vertebrate model system that contains a nearly homogeneous population of neurons, which are innervated by large glutamatergic nerve terminals called calyces of Held (CH). Key steps in maturation of CHs and MNTB neurons, including CH growth and competition, occur very quickly for most cells between postnatal days (P)2 and P6. Therefore, we characterized genome-wide changes in this system, with dense temporal sampling during the first postnatal week. We identified 541 genes whose expression changed significantly between P0-6 and clustered them into eight groups based on temporal expression profiles. Candidate genes from each of the eight profile groups were validated in separate samples by qPCR. Our tissue sample permitted comparison of known glial and neuronal transcripts and revealed that monotonically increasing or decreasing expression profiles tended to be associated with glia and neurons, respectively. Gene ontology revealed enrichment of genes involved in axon pathfinding, cell differentiation, cell adhesion and extracellular matrix. The latter category included elements of perineuronal nets, a prominent feature of MNTB neurons that is morphologically distinct by P6, when CH growth and competition are resolved onto nearly all MNTB neurons. These results provide a genetic framework for investigation of general mechanisms responsible for nerve terminal growth and maturation. © 2015 Wiley Periodicals, Inc. Develop Neurobiol 76: 166-189, 2016. PMID:26014473

  19. Detecting spatial and temporal patterns of aboveground production in a tallgrass prairie using remotely sensed data

    SciTech Connect

    Su, Haiping; Krummel, J.R.; Briggs, J.M.; Knapp, A.K.; Blair, J.M.

    1996-05-01

    Spatial and temporal patterns of aboveground production is a tallgrass prairie ecosystem constitute one of the important spatial components associated with ecological processes and biophysical resources (e.g. water and nutrients). This study addresses the effects of disturbance, topography, and climate on the spatial and temporal patterns of North American tallgrass prairie at a landscape level by using high resolution satellite data. Spatial heterogeneity derived from the satellite data was related to the impacts of the disturbance of fire and grazing, topographical gradient, and amount of precipitation during the growing season. The result suggests that ecological processes and biophysical resources can be quantified with high resolution satellite data for tallgrass prairie management.

  20. Temporal Patterns in Seawater Quality from Dredging in Tropical Environments.

    PubMed

    Jones, Ross; Fisher, Rebecca; Stark, Clair; Ridd, Peter

    2015-01-01

    Maintenance and capital dredging represents a potential risk to tropical environments, especially in turbidity-sensitive environments such as coral reefs. There is little detailed, published observational time-series data that quantifies how dredging affects seawater quality conditions temporally and spatially. This information is needed to test realistic exposure scenarios to better understand the seawater-quality implications of dredging and ultimately to better predict and manage impacts of future projects. Using data from three recent major capital dredging programs in North Western Australia, the extent and duration of natural (baseline) and dredging-related turbidity events are described over periods ranging from hours to weeks. Very close to dredging i.e. <500 m distance, a characteristic features of these particular case studies was high temporal variability. Over several hours suspended sediment concentrations (SSCs) can range from 100-500 mg L-1. Less turbid conditions (10-80 mg L-1) can persist over several days but over longer periods (weeks to months) averages were <10 mg L-1. During turbidity events all benthic light was sometimes extinguished, even in the shallow reefal environment, however a much more common feature was very low light 'caliginous' or daytime twilight periods. Compared to pre-dredging conditions, dredging increased the intensity, duration and frequency of the turbidity events by 10-, 5- and 3-fold respectively (at sites <500 m from dredging). However, when averaged across the entire dredging period of 80-180 weeks, turbidity values only increased by 2-3 fold above pre-dredging levels. Similarly, the upper percentile values (e.g., P99, P95) of seawater quality parameters can be highly elevated over short periods, but converge to values only marginally above baseline states over longer periods. Dredging in these studies altered the overall probability density distribution, increasing the frequency of extreme values. As such, attempts to understand the potential biological impacts must consider impacts across telescoping-time frames and changes to extreme conditions in addition to comparing central tendency (mean/median). An analysis technique to capture the entire range of likely conditions over time-frames from hours to weeks is described using a running means/percentile approach. PMID:26444284

  1. Temporal Patterns in Seawater Quality from Dredging in Tropical Environments

    PubMed Central

    Jones, Ross; Fisher, Rebecca; Stark, Clair; Ridd, Peter

    2015-01-01

    Maintenance and capital dredging represents a potential risk to tropical environments, especially in turbidity-sensitive environments such as coral reefs. There is little detailed, published observational time-series data that quantifies how dredging affects seawater quality conditions temporally and spatially. This information is needed to test realistic exposure scenarios to better understand the seawater-quality implications of dredging and ultimately to better predict and manage impacts of future projects. Using data from three recent major capital dredging programs in North Western Australia, the extent and duration of natural (baseline) and dredging-related turbidity events are described over periods ranging from hours to weeks. Very close to dredging i.e. <500 m distance, a characteristic features of these particular case studies was high temporal variability. Over several hours suspended sediment concentrations (SSCs) can range from 100–500 mg L-1. Less turbid conditions (10–80 mg L-1) can persist over several days but over longer periods (weeks to months) averages were <10 mg L-1. During turbidity events all benthic light was sometimes extinguished, even in the shallow reefal environment, however a much more common feature was very low light ‘caliginous’ or daytime twilight periods. Compared to pre-dredging conditions, dredging increased the intensity, duration and frequency of the turbidity events by 10-, 5- and 3-fold respectively (at sites <500 m from dredging). However, when averaged across the entire dredging period of 80–180 weeks, turbidity values only increased by 2–3 fold above pre-dredging levels. Similarly, the upper percentile values (e.g., P99, P95) of seawater quality parameters can be highly elevated over short periods, but converge to values only marginally above baseline states over longer periods. Dredging in these studies altered the overall probability density distribution, increasing the frequency of extreme values. As such, attempts to understand the potential biological impacts must consider impacts across telescoping-time frames and changes to extreme conditions in addition to comparing central tendency (mean/median). An analysis technique to capture the entire range of likely conditions over time-frames from hours to weeks is described using a running means/percentile approach. PMID:26444284

  2. Acoustics

    NASA Technical Reports Server (NTRS)

    Goodman, Jerry R.; Grosveld, Ferdinand

    2007-01-01

    The acoustics environment in space operations is important to maintain at manageable levels so that the crewperson can remain safe, functional, effective, and reasonably comfortable. High acoustic levels can produce temporary or permanent hearing loss, or cause other physiological symptoms such as auditory pain, headaches, discomfort, strain in the vocal cords, or fatigue. Noise is defined as undesirable sound. Excessive noise may result in psychological effects such as irritability, inability to concentrate, decrease in productivity, annoyance, errors in judgment, and distraction. A noisy environment can also result in the inability to sleep, or sleep well. Elevated noise levels can affect the ability to communicate, understand what is being said, hear what is going on in the environment, degrade crew performance and operations, and create habitability concerns. Superfluous noise emissions can also create the inability to hear alarms or other important auditory cues such as an equipment malfunctioning. Recent space flight experience, evaluations of the requirements in crew habitable areas, and lessons learned (Goodman 2003; Allen and Goodman 2003; Pilkinton 2003; Grosveld et al. 2003) show the importance of maintaining an acceptable acoustics environment. This is best accomplished by having a high-quality set of limits/requirements early in the program, the "designing in" of acoustics in the development of hardware and systems, and by monitoring, testing and verifying the levels to ensure that they are acceptable.

  3. Temporal and spatial patterns of suicides in Stockholm's subway stations.

    PubMed

    Uittenbogaard, Adriaan; Ceccato, Vania

    2015-08-01

    This paper investigates the potential temporal and spatial variations of suicides in subway stations in Stockholm, Sweden. The study also assesses whether the variation in suicide rates is related to the station environments by controlling for each station's location and a number of contextual factors using regression models and geographical information systems (GIS). Data on accidents are used as references for the analysis of suicides. Findings show that suicides tend to occur during the day and in the spring. They are concentrated in the main transportation hubs but, interestingly, during off-peak hours. However, the highest rates of suicides per passenger are found in Stockholm's subway stations located in the Southern outskirts. More than half of the variation in suicide rates is associated with stations that have walls between the two sides of the platform but still allow some visibility from passers-by. The surrounding environment and socioeconomic context show little effect on suicide rates, but stations embedded in areas with high drug-related crime rates tend to show higher suicide rates. PMID:25958035

  4. AN ACOUSTIC FRONT-END USING WARPED FREQUENCY AND TEMPORAL RESOLUTIONS

    E-print Network

    is found in the human ear. It is well-known that when the human ear performs fre- quency analysis. The wavelet-transform based acoustic front-ends [7, 81 utilize this property of human ear to some extent

  5. Time Curves: Folding Time to Visualize Patterns of Temporal Evolution in Data.

    PubMed

    Bach, Benjamin; Shi, Conglei; Heulot, Nicolas; Madhyastha, Tara; Grabowski, Tom; Dragicevic, Pierre

    2016-01-01

    We introduce time curves as a general approach for visualizing patterns of evolution in temporal data. Examples of such patterns include slow and regular progressions, large sudden changes, and reversals to previous states. These patterns can be of interest in a range of domains, such as collaborative document editing, dynamic network analysis, and video analysis. Time curves employ the metaphor of folding a timeline visualization into itself so as to bring similar time points close to each other. This metaphor can be applied to any dataset where a similarity metric between temporal snapshots can be defined, thus it is largely datatype-agnostic. We illustrate how time curves can visually reveal informative patterns in a range of different datasets. PMID:26529718

  6. Spatio-temporal expression patterns of anterior Hox genes during Nile tilapia (Oreochromis niloticus) embryonic development.

    PubMed

    Lyon, R Stewart; Davis, Adam; Scemama, Jean-Luc

    2013-01-01

    Hox genes encode transcription factors that function to pattern regional tissue identities along the anterior-posterior axis during animal embryonic development. Divergent nested Hox gene expression patterns within the posterior pharyngeal arches may play an important role in patterning morphological variation in the pharyngeal jaw apparatus (PJA) between evolutionarily divergent teleost fishes. Recent gene expression studies have shown the expression patterns from all Hox paralog group (PG) 2-6 genes in the posterior pharyngeal arches (PAs) for the Japanese medaka (Oryzias latipes) and from most genes of these PGs for the Nile tilapia (Oreochromis niloticus). While several orthologous Hox genes exhibit divergent spatial and temporal expression patterns between these two teleost species in the posterior PAs, several tilapia Hox gene expression patterns from PG3-6 must be documented for a full comparative study. Here we present the spatio-temporal expression patterns of hoxb3b, c3a, b4a, a5a, b5a, b5b, b6a and b6b in the neural tube and posterior PAs of the Nile tilapia. We show that several of these tilapia Hox genes exhibit divergent expression patterns in the posterior PAs from their medaka orthologs. We also compare these gene expression patterns to orthologs in other gnathostome vertebrates, including the dogfish shark. PMID:23376031

  7. Imaging of a patterned and buried molecular layer by coherent acoustic phonon spectroscopy

    NASA Astrophysics Data System (ADS)

    Hettich, Mike; Jacob, Karl; Ristow, Oliver; He, Chuan; Mayer, Jan; Schubert, Martin; Gusev, Vitalyi; Bruchhausen, Axel; Dekorsy, Thomas

    2012-11-01

    A molecular layer of aminopropyltriethoxysilane is patterned with a focused ion beam and subsequently covered by a gold film. The gold-polymer-substrate structures are afterwards imaged by ultrafast coherent acoustic phonon spectroscopy in reflection geometry. We demonstrate that the lateral structure of the covered polymer layer can be detected via the damping time of the vibrational mode of the gold film. Furthermore, we utilize Brillouin oscillations originating from the silicon substrate to map the structures and to estimate the molecular layer thickness.

  8. Magnetic hysteresis and magnetic flux patterns measured by acoustically stimulated electromagnetic response in a steel plate

    NASA Astrophysics Data System (ADS)

    Yamada, Hisato; Watanabe, Kakeru; Ikushima, Kenji

    2015-08-01

    Magnetic hysteresis loops are measured by ultrasonic techniques and used in visualizing the magnetic-flux distribution in a steel plate. The piezomagnetic coefficient determines the amplitude of acoustically stimulated electromagnetic (ASEM) fields, yielding the hysteresis behavior of the intensity of the ASEM response. By utilizing the high correspondence of the ASEM response to the magnetic-flux density, we image the specific spatial patterns of the flux density formed by an artificial defect in a steel plate specimen. Magnetic-flux probing by ultrasonic waves is thus shown to be a viable method of nondestructive material inspection.

  9. Comparison of temporal and spectral scattering methods using acoustically large breast models derived from magnetic resonance images

    PubMed Central

    Hesford, Andrew J.; Tillett, Jason C.; Astheimer, Jeffrey P.; Waag, Robert C.

    2014-01-01

    Accurate and efficient modeling of ultrasound propagation through realistic tissue models is important to many aspects of clinical ultrasound imaging. Simplified problems with known solutions are often used to study and validate numerical methods. Greater confidence in a time-domain k-space method and a frequency-domain fast multipole method is established in this paper by analyzing results for realistic models of the human breast. Models of breast tissue were produced by segmenting magnetic resonance images of ex vivo specimens into seven distinct tissue types. After confirming with histologic analysis by pathologists that the model structures mimicked in vivo breast, the tissue types were mapped to variations in sound speed and acoustic absorption. Calculations of acoustic scattering by the resulting model were performed on massively parallel supercomputer clusters using parallel implementations of the k-space method and the fast multipole method. The efficient use of these resources was confirmed by parallel efficiency and scalability studies using large-scale, realistic tissue models. Comparisons between the temporal and spectral results were performed in representative planes by Fourier transforming the temporal results. An RMS field error less than 3% throughout the model volume confirms the accuracy of the methods for modeling ultrasound propagation through human breast. PMID:25096103

  10. Variation in monsoon precipitation drives spatial and temporal patterns of Larrea tridentata growth in the

    E-print Network

    Variation in monsoon precipitation drives spatial and temporal patterns of Larrea tridentata growth of monsoon rainfall and local rates of water infiltration. The relationship between growth and precipitation that influence infiltration and water availability following monsoon storms. 5. Overall, the strong, nonlinear

  11. Spatio-temporal patterns in obsidian consumption in the Southern Nasca Region, Peru

    E-print Network

    Spatio-temporal patterns in obsidian consumption in the Southern Nasca Region, Peru Jelmer W Accepted 10 November 2009 Keywords: Obsidian Exchange Mobility Provenance analysis Nasca Peru a b s t r a c t Geochemical data from 426 obsidian artifacts collected from a range of sites in the Southern Nasca Region (SNR

  12. Dose and Temporal Pattern of Estrogen Exposure Determines Neuroprotective Outcome in Hippocampal

    E-print Network

    Brinton, Roberta Diaz

    Dose and Temporal Pattern of Estrogen Exposure Determines Neuroprotective Outcome in Hippocampal Sciences Center, Los Angeles, California 90089-9121 To address controversies of estrogen therapy, in vitro neurodegen- erative insults and the use of estrogen therapy to prevent vs. treat Alzheimer's disease

  13. TOOLS FOR PRESENTING SPATIAL AND TEMPORAL PATTERNS OF ENVIRONMENTAL MONITORING DATA

    EPA Science Inventory

    The EPA Health Effects Research Laboratory has developed this data presentation tool for use with a variety of types of data which may contain spatial and temporal patterns of interest. he technology links mainframe computing power to the new generation of "desktop publishing" ha...

  14. Spatio-temporal patterns of tree establishment are indicative of biotic interactions during early invasion

    E-print Network

    Kurapov, Alexander

    ., Fort Collins, CO 80526, USA e-mail: j9rice@hotmail.com C. B. Halpern School of Environmental and Forest. For the primary species, Abies grandis and Pinus contorta, we correlated age structures (unimodal in both species rapid conversion to woodland or forest. In combination, analyses of spatial and temporal patterns

  15. Temporal patterns of mosquito landing on human hosts: implications for detection, monitoring, and vector control

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Temporal patterns of landing activity on a human host by female Anopheles quadrimaculatus, Culex nigripalpus, Cx. quinquefasciatus, Ochlerotatus triseriatus and Aedes albopictus varied significantly throughout the diel period and with respect to time of collection within a 15 minute observation peri...

  16. Temporal patterns of happiness and information in a global social network: Hedonometrics and Twitter

    E-print Network

    Danforth, Chris

    Temporal patterns of happiness and information in a global social network: Hedonometrics, VT, 05401 (Dated: December 9, 2011) Individual happiness is a fundamental societal metric. Normally measured through self-report, happiness has often been indirectly characterized and overshadowed by more

  17. Spatio-temporal patterns in pelvic reduction in threespine stickleback (Gasterosteus aculeatus L.)

    E-print Network

    Bernatchez, Louis

    Spatio-temporal patterns in pelvic reduction in threespine stickleback (Gasterosteus aculeatus L threespine stickleback (Gasterosteus aculeatus L.). Places and times: Two representative ancestral marine.) in Lake Storvatnet Tom Klepaker 1 , Kjartan Østbye 2,3 , Louis Bernatchez 4 and L. Asbjørn Vøllestad 2 1

  18. A circuit model of the temporal pattern generator of Caenorhabditis egg-laying behavior

    E-print Network

    Schafer, William R.

    A circuit model of the temporal pattern generator of Caenorhabditis egg-laying behavior stochastic equations can be used to simulate the time course of egg-laying according to our circuit model: p0 of egg-laying events. 1 #12;2 PARAMETERS 2 2 Parameters The constant probability p0 characterizes

  19. Analyzing Temporal API Usage Patterns Gias Uddin, Barthelemy Dagenais, and Martin P. Robillard

    E-print Network

    Robillard, Martin

    Analyzing Temporal API Usage Patterns Gias Uddin, Barth´el´emy Dagenais, and Martin P. Robillard}@cs.mcgill.ca Abstract--Software reuse through Application Programming Interfaces (APIs) is an integral part of software development. As developers write client programs, their understanding and usage of APIs change over time. Can

  20. TEMPORAL AND SPATIAL PATTERNS OF METHANE EMISSIONS FROM A RESERVOIR DRAINING AN AGRICULTURAL WATERSHED (abstract)

    EPA Science Inventory

    We used multiple approaches to characterize temporal and spatial patterns in methane (CH4) emissions from a mid-latitude reservoir (William H. Harsha Lake, Ohio, USA) draining an agricultural watershed. Weekly to monthly monitoring at six sites in the reservoir during a 13 month...

  1. TEMPORAL AND SPATIAL PATTERNS OF METHANE EMISSIONS FROM A RESERVOIR DRAINING AN AGRICULTURAL WATERSHED

    EPA Science Inventory

    We used multiple approaches to characterize temporal and spatial patterns in methane (CH4) emissions from a mid-latitude reservoir (William H. Harsha Lake, Ohio, USA) draining an agricultural watershed. Weekly to monthly monitoring at six sites in the reservoir during a 13 month...

  2. EFFECTS OF HABITAT CONVERSION ON TEMPORAL ACTIVITY PATTERNS OF PHYLLOSTOMID BATS IN

    E-print Network

    Willig, Michael

    EFFECTS OF HABITAT CONVERSION ON TEMPORAL ACTIVITY PATTERNS OF PHYLLOSTOMID BATS IN LOWLAND into responses to disturbance that have conservation or management implications. Because many neotropical bats of frugivorous bats in lowland tropical rain forest of Iquitos, Peru´. Season had little effect on activity

  3. Discovering temporal patterns of differential gene expression in microarray time series

    E-print Network

    Edinburgh, University of

    measurement in each condition. Recent advances in microarray technology and falling costs have ledDiscovering temporal patterns of differential gene expression in microarray time series Oliver of Cambridge Abstract: A wealth of time series of microarray measurements have become available over recent

  4. Temporal Patterns of Nectar and Pollen Production in Aralia Hispida: Implications for Reproductive Success

    E-print Network

    Thomson, James D.

    Temporal Patterns of Nectar and Pollen Production in Aralia Hispida: Implications for Reproductive AND POLLEN PRODUCTION IN ARALIA HISPIDA: IMPLICATIONS FOR REPRODUCTIVE SUCCESS' JAMESD. THOMSONBrook,New York11794 USA Abstract. Large plants of Aralia hispida present their pollen and nectar in hundreds

  5. Temporal comparison of Broad-Complex expression during eggshell-appendage patterning and morphogenesis in two

    E-print Network

    Borenstein, Elhanan

    Temporal comparison of Broad-Complex expression during eggshell-appendage patterning and morphogenesis in two Drosophila species with different eggshell-appendage numbers Karen E. James, Celeste A in eggshell-appendage number--from as few as one to as many as nine, depending on the species. Appendage

  6. Auditory Temporal Pattern Perception in 6- and 12-Month-Old Infants.

    ERIC Educational Resources Information Center

    Morrongiello, Barbara A.

    1984-01-01

    A go/no-go conditioned head-turn paradigm was used to examine the abilities of 6- and 12-month-olds to discriminate changes in temporal grouping and their perception of absolute and relative timing information when listening to patterns of white-noise bursts. (Author/RH)

  7. Temporal trajectories of phosphorus and pedo-patterns mapped in Water Conservation Area 2, Everglades, Florida, USA

    E-print Network

    Grunwald, Sabine

    Temporal trajectories of phosphorus and pedo-patterns mapped in Water Conservation Area 2 present two types of temporal trajectories that document change in soil phosphorus (P) and pedo relationships between floc/soil TP temporal trajectories and vegetation, and (iv) describe change in pedo

  8. Temporal pattern of incorporation of /sup 3/H precursors into pituitary glycoproteins and their subsequent release

    SciTech Connect

    Grotjan, H.E. Jr.

    1982-04-01

    The temporal pattern of incorporation of various /sup 3/H precursors into glycoproteins by rat anterior pituitaries incubated in vitro and the release of /sup 3/H-glycoproteins was examined. (/sup 3/H)Leucine incorporation was linear with respect to time and (/sup 3/H)leucine-containing macromolecules appeared in the media in about 1 hr. The temporal pattern of (/sup 3/H)mannose incorporation and release was similar. (/sup 3/H)Galactose and (/sup 3/H)fucose were incorporated after apparent time of delays of approximately 15 min and soon thereafter (20-25 min) appeared in the medium in /sup 3/H-glycoproteins. Thus, these precursors appear to be added as terminal residues. (/sup 3/H)Glucosamine exhibited a pattern intermediate between (/sup 3/H)leucine and (/sup 3/H)fucose whereas (/sup 3/H)GlcNAc appeared to be incorporated as a terminal residue.

  9. Problems Associated with Statistical Pattern Recognition of Acoustic Emission Signals in a Compact Tension Fatigue Specimen

    NASA Technical Reports Server (NTRS)

    Hinton, Yolanda L.

    1999-01-01

    Acoustic emission (AE) data were acquired during fatigue testing of an aluminum 2024-T4 compact tension specimen using a commercially available AE system. AE signals from crack extension were identified and separated from noise spikes, signals that reflected from the specimen edges, and signals that saturated the instrumentation. A commercially available software package was used to train a statistical pattern recognition system to classify the signals. The software trained a network to recognize signals with a 91-percent accuracy when compared with the researcher's interpretation of the data. Reasons for the discrepancies are examined and it is postulated that additional preprocessing of the AE data to focus on the extensional wave mode and eliminate other effects before training the pattern recognition system will result in increased accuracy.

  10. Spatial-temporally resolved high-frequency surface acoustic waves on silicon investigated by femtosecond spectroscopy

    NASA Astrophysics Data System (ADS)

    Schubert, Martin; Grossmann, Martin; Ristow, Oliver; Hettich, Mike; Bruchhausen, Axel; Barretto, Elaine C. S.; Scheer, Elke; Gusev, Vitalyi; Dekorsy, Thomas

    2012-07-01

    Various types of surface acoustic waves are generated by femtosecond pulses on bulk silicon with aluminium stripe transducers. Rayleigh and leaky longitudinal surface acoustic wave modes are detected in the time domain for various propagation distances. The modes are identified by measuring on various pitches and comparing the spectra with finite element calculations. The lifetimes of the modes are determined quantitatively by spatially separating pump and probe beam, showing a significant difference in the lifetimes of both modes. We were able to excite and measure Rayleigh modes with frequencies of up to 90 GHz using a 100 nm period grating.

  11. Explicit modeling of temporal dynamics within musical signals for acoustical unit similarity

    E-print Network

    Richard, Gaël

    : Audio similarity Timbre modeling Audio analysis Temporal dynamics a b s t r a c t Timbre is a major cue for the human auditory system to recognize musical sounds. To describe timbre, the temporal dynamics reserved. 1. Introduction The timbre, along with the perceived loudness, pitch, and dura- tion

  12. Discrimination of acoustic patterns in rats using the water T-maze

    PubMed Central

    de la Mora, Daniela M.; Toro, Juan M.

    2014-01-01

    The extraction of abstract rules and their generalization to new items has been proposed to be at the heart of higher cognitive functions such as language. Research with animals has shown that various species can extract rather complex patterns from the input, as well as establish abstract same/different relations. However, much of these findings have been observed after extensive training procedures. Here, we tested rats’ capacity to discriminate and generalize tone triplets that entailed a repetition from triplets that followed an ordinal, non-repeating pattern following a relatively short discrimination training procedure in a water T-maze. Our findings demonstrate that, under this procedure and after only 12 sessions, rats can learn to discriminate both patterns when a reliable difference in pitch variations is present across them (Experiment 1). When differences in pitch are eliminated (Experiment 2), no discrimination between patterns is found. Results suggest a procedure based on a water T-maze might be used to explore discrimination of acoustic patterns in rodents. PMID:25729120

  13. Characterizing spatial and temporal patterns of intermittent rivers

    NASA Astrophysics Data System (ADS)

    de Vries, Stefan B.; Hoeve, Jasper; Sauquet, Eric; Leigh, Catherine; Bonada, Núria; Fike, Kimberly; Dahm, Clifford; Booij, Martijn J.; Datry, Thibault

    2015-04-01

    Intermittent rivers (IRs) support high biodiversity due to their dynamic alternations between terrestrial and aquatic phases. They represent a large proportion of the river network. However the current knowledge on these ecosystems is limited. The international research project "Intermittent River Biodiversity Analysis and Synthesis" (IRBAS, www.irbas.fr) aims to collect and analyze data on IR biodiversity from France, Spain, North America and Australia. These activities ultimately should help in identifying relationships between flow regime components and ecological responses. The IRBAS project will provide guidelines for policy-makers and resource managers for effective water and habitat management, restoration and preservation. This work examines one of the aspects in the IRBAS project: studying the large-scale spatial distribution of IRs as well as the year-to-year variability of zero-flow events. IRs were described by two variables: the frequency of periods without flow (FREQ) per time period (months or years) and the total number of zero-flow days (DUR) in a specified time window (month or year). Daily discharge data from more than 1700 gauging stations with no significant human influence on flow were collected from France, Spain, Australia and conterminous United States. A minimum length of 30 years of data starting from 1970 was required with less than 5% of missing data. Climate data for France and Australia were also collected. A classification of perennial versus intermittent rivers was defined, with 455 stations out of the 1684 considered "intermittent", i.e. the gauging station records had, on average, at least 5 zero-flow days per year. The analysis of the subset of IRs showed that: - Greater than 50% of the IRs in the database is located in Australia, where only 35% of the stations are considered perennial. In Spain the proportion of IRs reaches 25%. The proportion of intermittent rivers in France (7%) is certainly underestimated as a consequence of the monitoring strategy, i.e. gauging stations have been primarily installed to measure perennial flows of medium size basins and most of the IRs remain ungauged. This is also true in the US where ~ 7% of the current and historical gage network is on intermittent rivers. - Intermittence of rivers demonstrates high seasonality which varies from one country to another. - Links between climate variability and intermittence are not straightforward. No relation was found between annual DUR and annual precipitation in France whereas DUR was significantly correlated with precipitation in Australia. Potential evapotranspiration was correlated with DUR for France, but not for Australia, where the results were more obscure. - No spatially coherent trends in flow intermittence were identified in Spain, France or the USA. Significant trends according to the Mann Kendall test were found in Australia and results suggest trends in yearly DUR consistent with observed changes in rainfall in Western Australia during the last few decades. The El Nino cycle is one of the possible sources of variability in intermittency patterns.

  14. Temporal Feeding Pattern May Influence Reproduction Efficiency, the Example of Breeding Mares

    PubMed Central

    Benhajali, Haifa; Ezzaouia, Mohammed; Lunel, Christophe; Charfi, Faouzia; Hausberger, Martine

    2013-01-01

    Discomfort in farm animals may be induced by inappropriate types or timing of food supplies. Thus, time restriction of meals and lack of roughage have been shown to be one source of emergence of oral stereotypies and abnormal behaviour in horses which have evolved to eat high-fibre diets in small amounts over long periods of time. This feeding pattern is often altered in domestic environment where horses are often fed low fibre meals that can be rapidly consumed. This study aimed at determining the effect of the temporal pattern of feeding on reproductive efficiency of breeding mares, One hundred Arab breeding mares were divided into two groups that differed only in the temporal pattern of roughage availability: only at night for the standard feeding pattern group (SFP mares), night and day for the “continuous feeding” group (CF mares). The total amount of roughage provided was the same as the CF mares received half of the hay during the day while in paddock (haynets). Mares were tested for oestrus detection by teasing with one stallion and were then examined clinically by rectal palpations and ultrasound before being mated naturally or inseminated by fresh or frozen semen. Multivariate logistic regression was used to analyse data. The treatment affected significantly the reproductive efficiency of the mares with fewer oestrus abnormalities (p?=?0.0002) and more fertility (p?=?0.024) in CF mares (conception rate?=?81% versus 55% in SFP mares). Ensuring semi-continous feeding by providing roughage may be a way of fulfilling the basic physiological needs of the horses' digestive system, reducing stress and associated inhibitors of reproduction. To our knowledge, this study provides the first evidence of an impact of temporal feeding patterns on reproductive success in a Mammal. Temporal patterns of feeding may be a major and underestimated factor in breeding. PMID:24098636

  15. Temporal and Spatial Patterns of Habitat Use by Juveniles of a Small Coastal Shark (Mustelus lenticulatus) in an Estuarine Nursery

    PubMed Central

    Francis, Malcolm P.

    2013-01-01

    Juvenile rig (Mustelus lenticulatus) were internally tagged with acoustic transmitters and tracked with acoustic receivers deployed throughout two arms of Porirua Harbour, a small (7 km2) estuary in New Zealand. Ten rig were tracked for up to four months during summer–autumn to determine their spatial and temporal use of the habitat. The overall goal was to estimate the size of Marine Protected Areas required to protect rig nursery areas from direct human impacts. Rig showed clear site preferences, but those preferences varied among rig and over time. They spent most of their time in large basins and on shallow sand and mud flats around the margins, and avoided deep channels. Habitat range increased during autumn for many of the rig. Only one shark spent time in both harbour arms, indicating that there was little movement between the two. Rig home ranges were 2–7 km2, suggesting that an effective MPA would need to cover the entire Porirua Harbour. They moved to outer harbour sites following some high river flow rates, and most left the harbour permanently during or soon after a river spike, suggesting that they were avoiding low salinity water. Rig showed strong diel movements during summer, although the diel pattern weakened in autumn. Persistent use of the same day and night sites indicates that diel movements are directed rather than random. Further research is required to determine the sizes of rig home ranges in larger harbours where nursery habitat is more extensive. Marine Protected Areas do not control land-based impacts such as accelerated sedimentation and heavy metal pollution, so integration of marine and terrestrial management tools across a range of government agencies is essential to fully protect nursery areas. PMID:23437298

  16. Different Temporal Patterns of Specific and General Autobiographical Memories across the Lifespan in Alzheimer's Disease

    PubMed Central

    Philippi, Nathalie; Rousseau, François; Noblet, Vincent; Botzung, Anne; Després, Olivier; Cretin, Benjamin; Kremer, Stéphane; Blanc, Frédéric; Manning, Liliann

    2015-01-01

    We compared specific (i.e., associated with a unique time and space) and general (i.e., extended or repeated events) autobiographical memories (AbM) in Alzheimer's disease (AD). The comparison aims at investigating the relationship between these two components of AbM across the lifespan and the volume of cerebral regions of interest within the temporal lobe. We hypothesized that the ability to elicit specific memories would correlate with hippocampal volume, whereas evoking general memories would be related to lateral temporal lobe. AbM was assessed using the modified Crovitz test in 18 patients with early AD and 18 matched controls. The proportions of total memories—supposed to reflect the ability to produce general memories—and specific memories retrieved were compared between AD patients and controls. Correlations to MRI volumes of temporal cortex were tested. We found different temporal patterns for specific and general memories in AD patients, with (i) relatively spared general memories, according to a temporal gradient that preserved remote memories, predominantly associated with right lateral temporal cortex volume. (ii) Conversely, the retrieval of specific AbMs was impaired for all life periods and correlated with bilateral hippocampal volumes. Our results highlight a shift from an initially episodic to a semantic nature of AbMs during AD, where the abstracted form of memories remains. PMID:26175549

  17. Emergence of striation patterns in acoustic signals reflected from dynamic surface waves.

    PubMed

    Choo, Youngmin; Seong, Woojae; Song, Heechun

    2014-09-01

    A striation pattern can emerge in high-frequency acoustic signals interacting with dynamic surface waves. The striation pattern is analyzed using a ray tracing algorithm for both a sinusoidal and a rough surface. With a source or receiver close to the surface, it is found that part of the surface on either side of the specular reflection point can be illuminated by rays, resulting in time-varying later arrivals in channel impulse response that form the striation pattern. In contrast to wave focusing associated with surface wave crests, the striation occurs due to reflection off convex sections around troughs. Simulations with a sinusoidal surface show both an upward (advancing) and downward (retreating) striation patterns that depend on the surface-wave traveling direction and the location of the illuminated area. In addition, the striation length is determined mainly by the depth of the source or receiver, whichever is closer in range to the illuminated region. Even with a rough surface, the striation emerges in both directions. However, broadband (7-13?kHz) simulations in shallow water indicate that the longer striation in one direction is likely pronounced against a quiet noise background, as observed from at-sea experimental data. PMID:25190380

  18. Exploratory Analysis of Spatial-Temporal Patterns of Air Pollution in the City

    NASA Astrophysics Data System (ADS)

    Champendal, Alexandre; Kanevski, Mikhail; Huguenot, Pierre-Emmanuel; Golay, Jean

    2013-04-01

    Air pollution in the city is an important problem influencing environment, well-being of society, economy, management of urban zones, etc. The problem is extremely difficult due to a very complex distribution of the pollution sources, morphology of the city and dispersion processes leading to multivariate nature of the phenomena and high local spatial-temporal variability. The task of understanding, modelling and prediction of spatial-temporal patterns of air pollution in urban zones is an interesting and challenging topic having many research axes from science-based modelling to geostatistics and data mining. The present research mainly deals with a comprehensive exploratory analysis of spatial-temporal air pollution data using statistical, geostatistical and machine learning tools. This analysis helps to 1) understand and model spatial-temporal correlations using variography, 2) explore the temporal evolution of spatial correlation matrix; 3) analyse and visualize an interconnection between measurement stations using network science tools; 4) quantify the availability and predictability of structured patterns. The real data case study deals with spatial-temporal air pollution data of canton Geneva (2002-2011). Carbon dioxide (NO2) have caught our attention. It has effects on health: nitrogen dioxide can irritate the lungs, effects on plants; NO2 contributes to the phenomenon of acid rain. The negative effects of nitrogen dioxides on plants are reducing the growth, production and pesticide resistance. And finally the effects on materials: nitrogen dioxides increase the corrosion. Well-defined patterns of spatial-temporal correlations were detected. The analysis and visualization of spatial correlation matrix for 91 stations were carried out using the network science tools and high levels of clustering were revealed. Moving Window Correlation Matrix and Spatio-temporal variography methods were applied to define and explore the dynamic of our data. More than just exploratory of data analysis, this study brings to front the high complexity of air pollution in the city. This approach allowed the definition, parameterisation and analysis of the air pollution data in the city with the future goal of integrating this knowledge in the development of different models of air pollution diffusion. Keywords: space-time environmental data, variography, moving window correlation matrix, network science

  19. Reliability of spatial and temporal patterns of C. finmarchicus inferred from the CPR survey

    NASA Astrophysics Data System (ADS)

    Hélaouët, Pierre; Beaugrand, Grégory; Reygondeau, Gabriel

    2016-01-01

    The Continuous Plankton Recorder (CPR) survey has collected plankton since 1958 in the North Atlantic Ocean and its adjacent seas. Among all species recorded by the CPR, Calanus finmarchicus has probably been the most investigated species because of its ecological importance for the temperate and subpolar regions of the North Atlantic Ocean. However, abundances of C. finmarchicus assessed from the CPR survey have been rarely compared to more traditional sampling methodologies. In this study, we examine and compare spatial (surface and vertical) and temporal (diel and seasonal) patterns in the abundance of C. finmarchicus with another sampling technique in the gulf of Maine. Our results provide evidence that the CPR survey not only gives internally consistent time series of C. finmarchicus, but also an accurate representation of both spatial (surface and vertical) and temporal (diel and seasonal) patterns.

  20. Monitoring temporal patterns of vertical hyporheic flux via distributed temperature sensors

    NASA Astrophysics Data System (ADS)

    Su, X.; Shu, L.; Li, W.; Lu, C.; Zhu, J.; Wu, G.; Wang, X.; Wang, G.

    2015-05-01

    Hyporheic exchange is of great significance for evaluating and developing water resources, as well as protecting ecosystem health. Temperature monitoring is one of the powerful tools for recognizing the hyporheic flux with high precision, low cost and great convenience. The streambed temperature at different depths (0 to 1.00 m), and the air and stream water temperatures at Dawen River, Jining City, were monitored using distributed temperature sensors (DTS). The temperature series were used to estimate the hyporheic flux through the analytical solution of the governing one-dimensional heat transport equation. The temporal patterns of flux along the vertical profile were analysed. The results indicated that surface water and air temperatures fluctuated approximately sinusoidally, and the groundwater temperature was relatively stable over time. The hyporheic flux at different depths showed different temporal patterns. Moreover, the dynamic curves of hyporheic flux were depth-dependent and probably controlled by the stream water level and groundwater field.

  1. Automatic classification of acetowhite temporal patterns to identify precursor lesions of cervical cancer

    NASA Astrophysics Data System (ADS)

    Gutiérrez-Fragoso, K.; Acosta-Mesa, H. G.; Cruz-Ramírez, N.; Hernández-Jiménez, R.

    2013-12-01

    Cervical cancer has remained, until now, as a serious public health problem in developing countries. The most common method of screening is the Pap test or cytology. When abnormalities are reported in the result, the patient is referred to a dysplasia clinic for colposcopy. During this test, a solution of acetic acid is applied, which produces a color change in the tissue and is known as acetowhitening phenomenon. This reaction aims to obtaining a sample of tissue and its histological analysis let to establish a final diagnosis. During the colposcopy test, digital images can be acquired to analyze the behavior of the acetowhitening reaction from a temporal approach. In this way, we try to identify precursor lesions of cervical cancer through a process of automatic classification of acetowhite temporal patterns. In this paper, we present the performance analysis of three classification methods: kNN, Naïve Bayes and C4.5. The results showed that there is similarity between some acetowhite temporal patterns of normal and abnormal tissues. Therefore we conclude that it is not sufficient to only consider the temporal dynamic of the acetowhitening reaction to establish a diagnosis by an automatic method. Information from cytologic, colposcopic and histopathologic disciplines should be integrated as well.

  2. The mechanisms of spatial and temporal patterning of cell-edge dynamics.

    PubMed

    Verkhovsky, Alexander B

    2015-10-01

    Adherent cells migrate and change their shape by means of protrusion and retraction at their edges. When and where these activities occur defines the shape of the cell and the way it moves. Despite a great deal of knowledge about the structural organization, components, and biochemical reactions involved in protrusion and retraction, the origins of their spatial and temporal patterns are still poorly understood. Chemical signaling circuitry is believed to be an important source of patterning, but recent studies highlighted mechanisms based on physical forces, motion, and mechanical feedback. PMID:26432504

  3. Insights into temporal patterns of hospital patient safety from routinely collected electronic data

    PubMed Central

    2015-01-01

    Background The last two decades have seen an unprecedented growth in initiatives aimed to improve patient safety. For the most part, however, evidence of their impact remains controversial. At the same time, the healthcare industry has experienced an also unprecedented growth in the amount and variety of available electronic data. Methods In this paper, we provide a review of the use of routinely collected electronic data in the identification, analysis and surveillance of temporal patterns of patient safety. Results Two important temporal patterns of the safety of hospitalised patients were identified and discussed: long-term trends related to changes in clinical practice and healthcare policy; and shorter term patterns related to variations in workforce and resources. We found that consistency in reporting is intrinsically related to availability of large-scale, fit-for-purpose data. Consistent reported trends of patient harms included an increase in the incidence of post-operative sepsis and a decrease in central-line associated bloodstream infections. Improvement in the treatment of specific diseases, such as cardiac conditions, has also been demonstrated. Linkage of hospital data with other datasets provides essential temporal information about errors, as well as information about unsuspected system deficiencies. It has played an important role in the measurement and analysis of the effects of off-hours hospital operation. Conclusions Measuring temporal patterns of patient safety is still inadequate with electronic health records not yet playing an important role. Patient safety interventions should not be implemented without a strategy for continuous monitoring of their effect. PMID:25870757

  4. Transient dynamics and rhythm coordination of inferior olive spatio-temporal patterns.

    PubMed

    Latorre, Roberto; Aguirre, Carlos; Rabinovich, Mikhail I; Varona, Pablo

    2013-01-01

    The inferior olive (IO) is a neural network belonging to the olivo-cerebellar system whose neurons are coupled with electrical synapses and display subthreshold oscillations and spiking activity. The IO is frequently proposed as the generator of timing signals to the cerebellum. Electrophysiological and imaging recordings show that the IO network generates complex spatio-temporal patterns. The generation and modulation of coherent spiking activity in the IO is one key issue in cerebellar research. In this work, we build a large scale IO network model of electrically coupled conductance-based neurons to study the emerging spatio-temporal patterns of its transient neuronal activity. Our modeling reproduces and helps to understand important phenomena observed in IO in vitro and in vivo experiments, and draws new predictions regarding the computational properties of this network and the associated cerebellar circuits. The main factors studied governing the collective dynamics of the IO network were: the degree of electrical coupling, the extent of the electrotonic connections, the presence of stimuli or regions with different excitability levels and the modulatory effect of an inhibitory loop (IL). The spatio-temporal patterns were analyzed using a discrete wavelet transform to provide a quantitative characterization. Our results show that the electrotonic coupling produces quasi-synchronized subthreshold oscillations over a wide dynamical range. The synchronized oscillatory activity plays the role of a timer for a coordinated representation of spiking rhythms with different frequencies. The encoding and coexistence of several coordinated rhythms is related to the different clusterization and coherence of transient spatio-temporal patterns in the network, where the spiking activity is commensurate with the quasi-synchronized subthreshold oscillations. In the presence of stimuli, different rhythms are encoded in the spiking activity of the IO neurons that nevertheless remains constrained to a commensurate value of the subthreshold frequency. The stimuli induced spatio-temporal patterns can reverberate for long periods, which contributes to the computational properties of the IO. We also show that the presence of regions with different excitability levels creates sinks and sources of coordinated activity which shape the propagation of spike wave fronts. These results can be generalized beyond IO studies, as the control of wave pattern propagation is a highly relevant problem in the context of normal and pathological states in neural systems (e.g., related to tremor, migraine, epilepsy) where the study of the modulation of activity sinks and sources can have a potential large impact. PMID:24046731

  5. Temporal and spatial patterns of diarrhoea in the Mekong Delta area, Vietnam.

    PubMed

    Phung, D; Huang, C; Rutherford, S; Chu, C; Wang, X; Nguyen, M; Nguyen, N H; DO, C M; Nguyen, T H

    2015-12-01

    This study examined the temporal and spatial patterns of diarrhoea in relation to hydro-meteorological factors in the Mekong Delta area in Vietnam. A time-series design was applied to examine the temporal pattern of the climate-diarrhoea relationship using Poisson regression models. Spatial analysis was applied to examine the spatial clusters of diarrhoea using Global Moran's I and local indicators of spatial autocorrelation (LISA). The temporal pattern showed that the highest peak of diarrhoea was from weeks 30-42 corresponding to August-October annually. A 1 cm increase in river water level at a lag of 1 week was associated with a small [0·07%, 95% confidence interval (CI) 0·01-0·1] increase in the diarrhoeal rate. A 1 °C increase in temperature at lag of 2 and 4 weeks was associated with a 1·5% (95% CI 0·3-2·7) and 1·1% (95% CI 0·1-2·3) increase in diarrhoeal risk, respectively. Relative humidity and diarrhoeal risk were in nonlinear relationship. The spatial analysis showed significant clustering of diarrhoea, and the LISA map shows three multi-centred diarrhoeal clusters and three single-centred clusters in the research location. The findings suggest that climatic conditions projected to be associated with climate change have important implication for human health impact in the Mekong Delta region. PMID:25876699

  6. Stress patterns in Dutch (compound) adjectives: acoustic measurements and perception data.

    PubMed

    van Heuven, V J

    1987-01-01

    Under the so-called culminative definition of stress, present-day linguists hold the view that within one word or larger domain only one syllable can bear the stress. This is in contrast with the classical (British-English) phonetic tradition which allows the occurrence of two strong stresses within certain words, which are then called 'double-stressed'. Moreover, precisely the class of double-stressed words was said to be subject to rhythmic variation (or 'stress clash'). The present paper purports to find acoustic and perceptual evidence that may allow us to choose between these competing proposals, comparing the behaviour of Dutch adjectives with canonically rising, falling, and double-stress patterns, in spoken contexts that should bear out the predicted rhythmic changes in double-stressed words. Our results argue against a strictly culminative definition of stress. PMID:3588687

  7. Acoustic Emission Patterns and the Transition to Ductility in Sub-Micron Scale Laboratory Earthquakes

    NASA Astrophysics Data System (ADS)

    Ghaffari, H.; Xia, K.; Young, R.

    2013-12-01

    We report observation of a transition from the brittle to ductile regime in precursor events from different rock materials (Granite, Sandstone, Basalt, and Gypsum) and Polymers (PMMA, PTFE and CR-39). Acoustic emission patterns associated with sub-micron scale laboratory earthquakes are mapped into network parameter spaces (functional damage networks). The sub-classes hold nearly constant timescales, indicating dependency of the sub-phases on the mechanism governing the previous evolutionary phase, i.e., deformation and failure of asperities. Based on our findings, we propose that the signature of the non-linear elastic zone around a crack tip is mapped into the details of the evolutionary phases, supporting the formation of a strongly weak zone in the vicinity of crack tips. Moreover, we recognize sub-micron to micron ruptures with signatures of 'stiffening' in the deformation phase of acoustic-waveforms. We propose that the latter rupture fronts carry critical rupture extensions, including possible dislocations faster than the shear wave speed. Using 'template super-shear waveforms' and their network characteristics, we show that the acoustic emission signals are possible super-shear or intersonic events. Ref. [1] Ghaffari, H. O., and R. P. Young. "Acoustic-Friction Networks and the Evolution of Precursor Rupture Fronts in Laboratory Earthquakes." Nature Scientific reports 3 (2013). [2] Xia, Kaiwen, Ares J. Rosakis, and Hiroo Kanamori. "Laboratory earthquakes: The sub-Rayleigh-to-supershear rupture transition." Science 303.5665 (2004): 1859-1861. [3] Mello, M., et al. "Identifying the unique ground motion signatures of supershear earthquakes: Theory and experiments." Tectonophysics 493.3 (2010): 297-326. [4] Gumbsch, Peter, and Huajian Gao. "Dislocations faster than the speed of sound." Science 283.5404 (1999): 965-968. [5] Livne, Ariel, et al. "The near-tip fields of fast cracks." Science 327.5971 (2010): 1359-1363. [6] Rycroft, Chris H., and Eran Bouchbinder. "Fracture Toughness of Metallic Glasses: Annealing-Induced Embrittlement." Physical review letters 109.19 (2012): 194301. [7] Buehler, Markus J., Farid F. Abraham, and Huajian Gao. "Hyperelasticity governs dynamic fracture at a critical length scale." Nature 426.6963 (2003): 141-146.

  8. Spatio-Temporal Patterns of Barmah Forest Virus Disease in Queensland, Australia

    PubMed Central

    Naish, Suchithra; Hu, Wenbiao; Mengersen, Kerrie; Tong, Shilu

    2011-01-01

    Background Barmah Forest virus (BFV) disease is a common and wide-spread mosquito-borne disease in Australia. This study investigated the spatio-temporal patterns of BFV disease in Queensland, Australia using geographical information system (GIS) tools and geostatistical analysis. Methods/Principal Findings We calculated the incidence rates and standardised incidence rates of BFV disease. Moran's I statistic was used to assess the spatial autocorrelation of BFV incidences. Spatial dynamics of BFV disease was examined using semi-variogram analysis. Interpolation techniques were applied to visualise and display the spatial distribution of BFV disease in statistical local areas (SLAs) throughout Queensland. Mapping of BFV disease by SLAs reveals the presence of substantial spatio-temporal variation over time. Statistically significant differences in BFV incidence rates were identified among age groups (?2?=?7587, df?=?7327,p<0.01). There was a significant positive spatial autocorrelation of BFV incidence for all four periods, with the Moran's I statistic ranging from 0.1506 to 0.2901 (p<0.01). Semi-variogram analysis and smoothed maps created from interpolation techniques indicate that the pattern of spatial autocorrelation was not homogeneous across the state. Conclusions/Significance This is the first study to examine spatial and temporal variation in the incidence rates of BFV disease across Queensland using GIS and geostatistics. The BFV transmission varied with age and gender, which may be due to exposure rates or behavioural risk factors. There are differences in the spatio-temporal patterns of BFV disease which may be related to local socio-ecological and environmental factors. These research findings may have implications in the BFV disease control and prevention programs in Queensland. PMID:22022430

  9. Temporal variability of thermal refuges and water temperature patterns in an Atlantic salmon river

    NASA Astrophysics Data System (ADS)

    Dugdale, S.; Bergeron, N.; St-Hilaire, A.

    2013-12-01

    River basins in northern latitudes are predicted to experience increased water temperatures under future climate change. This will have a negative impact on most salmonid populations which are highly intolerant of temperatures in excess of 23° C. In response to summer heat stress, salmonids thermoregulate in discrete units of cold water. Termed thermal refuges, these are of great significance to the ability of salmon and trout to survive increased water temperatures. Although previous research has documented links between the spatial patterns of thermal refuges and salmonid distribution and behaviour, the temporal variability of these cold water units has never been studied. In this investigation, airborne thermal infrared (TIR) imagery acquired six times between 2009 and 2011 was used to characterise temporal variability of thermal refuges and broader scale patterns of water temperature in the Rivière Ouelle, an Atlantic salmon river in Québec, Canada. Thermal refuges detected from TIR imagery were classified into a series of categories, revealing notable inter-survey variability between the absolute counts of each refuge type. Broader-scale longitudinal temperature profiles of river temperature were also extracted. Temporal variability in the absolute counts of lateral groundwater seeps (the most frequently observed thermal refuge class) was shown to correlate strongly with long duration hydrometeorological metrics such as seasonal mean discharge (R2 = 0.94, p < 0.01). Conversely, thermal refuges resulting from cold water tributaries were more temporally stable. Downstream temperature complexity was shown to correlate best with short duration metrics such as cumulative precipitation depth within a 5-day period prior to each survey (R2 = 0.90, p < 0.01). This study is the first of its kind to link thermal refuge dynamics and water temperature patterns to hydrometeorological conditions and may offer valuable insights into how changing hydrometeorological regimes could influence these important cold water units in the future.

  10. Detection of Anoplophora glabripennis (Coleoptera: Cerambycidae) larvae in different host trees and tissues by automated analyses of sound-impulse frequency and temporal patterns.

    PubMed

    Mankin, R W; Smith, M T; Tropp, J M; Atkinson, E B; Jong, D Y

    2008-06-01

    Anoplophora glabripennis (Motschulsky) (Coleoptera: Cerambycidae), an invasive pest quarantined in the United States, is difficult to detect because the larvae feed unseen inside trees. Acoustic technology has potential for reducing costs and hazards of tree inspection, but development of practical methods for acoustic detection requires the solution of technical problems involving transmission of resonant frequencies in wood and high background noise levels in the urban environments where most infestations have occurred. A study was conducted to characterize sounds from larvae of different ages in cambium, sapwood, and heartwood of bolts from three host tree species. Larval sounds in all of the tested trees and tissues consisted primarily of trains of brief, 3-10-ms impulses. There were no major differences in the spectral or temporal pattern characteristics of signals produced by larvae of different ages in each tissue, but larval sounds in sapwood often had fewer spectral peaks than sounds in cambium and heartwood. A large fraction, but not all background sounds could be discriminated from larval sounds by automated spectral analyses. In 3-min recordings from infested bolts, trains containing impulses in patterns called bursts occurred frequently, featuring 7-49 impulses separated by small intervals. Bursts were rarely detected in uninfested bolts. The occurrence of bursts was found to predict infestations more accurately than previously used automated spectral analyses alone. Bursts and other features of sounds that are identifiable by automated techniques may ultimately lead to improved pest detection applications and new insight into pest behavior. PMID:18613585

  11. Similarity breeds proximity: pattern similarity within and across contexts is related to later mnemonic judgments of temporal proximity.

    PubMed

    Ezzyat, Youssef; Davachi, Lila

    2014-03-01

    Experiences unfold over time, but little is known about the mechanisms that support the formation of coherent episodic memories for temporally extended events. Recent work in animals has provided evidence for signals in hippocampus that could link events across temporal gaps; however, it is unknown whether and how such signals might be related to later memory for temporal information in humans. We measured patterns of fMRI BOLD activity as people encoded items that were separated in time and manipulated the presence of shared or distinct context across items. We found that hippocampal pattern similarity in the BOLD response across trials predicted later temporal memory decisions when context changed. By contrast, pattern similarity in lateral occipital cortex was related to memory only when context remained stable. These data provide evidence in humans that representational stability in hippocampus across time may be a mechanism for temporal memory organization. PMID:24607235

  12. Microscopic theory of spatial-temporal congested traffic patterns at highway bottlenecks

    NASA Astrophysics Data System (ADS)

    Kerner, Boris S.; Klenov, Sergey L.

    2003-09-01

    A microscopic theory of spatial-temporal congested traffic patterns at highway bottlenecks due to on-ramps, merge bottlenecks (a reduction of highway lanes), and off-ramps is presented. The basic postulate of three-phase traffic theory is used, which claims that homogeneous (in space and time) model solutions (steady states) of synchronized flow cover a two dimensional region in the flow-density plane [B. S. Kerner, Phys. Rev. Lett. 81, 3797 (1998); Trans. Res. Rec. 1678, 160 (1999)]. Phase transitions leading to diverse congested patterns, pattern evolution, and pattern nonlinear features have been found. Diagrams of congested patterns, i.e., regions of the pattern emergence dependent on traffic demand, have been derived. Diverse effects of metastability with respect to the pattern formation have been found. The microscopic theory allows us to explain the main empirical pattern features at on-ramps and off-ramps which have recently been found [B. S. Kerner, Phys. Rev. E 65, 046138 (2002)]. (i) Rather than moving jams, synchronized flow first occurs at bottlenecks if the flow rate is slowly increasing. Wide moving jams can spontaneously occur only in synchronized flow. (ii) General patterns (GP) and synchronized flow patterns (SP) can spontaneously emerge at the bottlenecks. There can be the widening SP (WSP), the moving SP (MSP), and the localized SP. (iii) At on-ramps cases of “weak” and “strong” congestion should be distinguished. In contrast to weak congestion, under strong congestion the flow rate in synchronized flow in GP reaches a limit flow rate, the frequency of the moving jam emergence reaches a maximum, i.e., the GP characteristics under strong congestion do not depend on traffic demand. (iv) At the off-ramp GP with weak congestion occur. (v) A study of the pattern formation on a highway with two bottlenecks shows that diverse expanded patterns can occur, which cover both bottlenecks. SP first emerged at the downstream bottleneck can be caught at the upstream bottleneck (the catch effect). MSP, WSP, or wide moving jams first emerged at the downstream bottleneck induce diverse patterns at the upstream bottleneck. The onset of congestion at the upstream bottleneck can lead to an intensification of congestion at the downstream bottleneck. This causes a change in the pattern type and/or the pattern features.

  13. Controls of initial topography on temporal and spatial patterns of glacial erosion

    NASA Astrophysics Data System (ADS)

    Pedersen, Vivi K.; Huismans, Ritske S.; Herman, Frédéric; Egholm, David L.

    2014-10-01

    Here we investigate the influence of initial pre-glacial topography on spatial and temporal patterns of glacial erosion using numerical surface process modelling, including a higher order ice sheet model. First, we consider glacier dynamics when simulating glaciation in two real landscapes, representing plateau-type topography (southeast Australia) and characteristic steady-state fluvial topography (southern Taiwan). We find that the different initial landscape configurations result in distinctly different ice configurations and patterns of basal sliding. The sliding patterns are controlled by ice configuration and the resulting basal shear stresses and by the thermal properties at the base of the ice. We then investigate how these characteristic patterns of basal sliding control glacial erosion and long-term landscape evolution using synthetic representations of the two landscapes. The two landscape configurations result in markedly different spatial and temporal patterns of glacial erosion. However, the resulting landscapes may have similar morphology, irrespective of initial landscapes and glacial erosion patterns being significantly different. The numerical experiments also suggest that, in addition to basal temperature, basal shear stress is important in restricting long-term glacial erosion, which is relevant for the preservation of landforms during glaciations. Specifically, pre-glacial landforms may be eroded although they are initially protected by cold-based ice, when the ice configuration promotes significant basal shear stress (glacial erosion) at the edge of a plateau-like landscape. In contrast, pre-glacial landforms may be preserved irrespective of the ice being warm-based, when low gradients in the ice surface act to limit basal shear stress.

  14. Identification of neural firing patterns, frequency and temporal coding mechanisms in individual aortic baroreceptors

    PubMed Central

    Gu, Huaguang; Pan, Baobao

    2015-01-01

    In rabbit depressor nerve fibers, an on-off firing pattern, period-1 firing, and integer multiple firing with quiescent state were observed as the static pressure level was increased. A bursting pattern with bursts at the systolic phase of blood pressure, continuous firing, and bursting with burst at diastolic phase and quiescent state at systolic phase were observed as the mean level of the dynamic blood pressure was increased. For both static and dynamic pressures, the firing frequency of the first two firing patterns increased and of the last firing pattern decreased due to the quiescent state. If the quiescent state is disregarded, the spike frequency becomes an increasing trend. The instantaneous spike frequency of the systolic phase bursting, continuous firing, and diastolic phase bursting can reflect the temporal process of the systolic phase, whole procedure, and diastolic phase of the dynamic blood pressure signal, respectively. With increasing the static current corresponding to pressure level, the deterministic Hodgkin-Huxley (HH) model manifests a process from a resting state first to period-1 firing via a subcritical Hopf bifurcation and then to a resting state via a supercritical Hopf bifurcation, and the firing frequency increases. The on-off firing and integer multiple firing were here identified as noise-induced firing patterns near the subcritical and supercritical Hopf bifurcation points, respectively, using the stochastic HH model. The systolic phase bursting and diastolic phase bursting were identified as pressure-induced firings near the subcritical and supercritical Hopf bifurcation points, respectively, using an HH model with a dynamic signal. The firing, spike frequency, and instantaneous spike frequency observed in the experiment were simulated and explained using HH models. The results illustrate the dynamics of different firing patterns and the frequency and temporal coding mechanisms of aortic baroreceptor. PMID:26379539

  15. Are obsidian subsources meaningful units of analysis?: temporal and spatial patterning of subsources in the Coso Volcanic Field,

    E-print Network

    Are obsidian subsources meaningful units of analysis?: temporal and spatial patterning Archaeologists frequently assign artifacts to chemically discrete subsignatures of major obsidian sources. While reserved. Keywords: Obsidian fingerprinting; Intra-source variability; Coso Volcanic Field; California

  16. Spatial and temporal patterns of pesticide use on California almonds and associated risks to the surrounding environment

    E-print Network

    Zhang, Minghua

    Spatial and temporal patterns of pesticide use on California almonds and associated risks/risk in California almonds were studied. · Use intensities of insecticides/fungicides/herbicides showed latitudinal xxxx Keywords: Pesticide Environmental risk Pest management Regulation Almond California Various

  17. TEMPORAL PATTERNS IN THREE-DIMENSIONAL STRUCTURE AND ACTIVITY OF SCHOOLS OF THE ATLANTIC SILVERSIDE 'MENIDIA MENIDIA'

    EPA Science Inventory

    Temporal patterns in the structure and activity of schools of the Atlantic silverside Menidia menidia were investigated under laboratory conditions using a new computerized video technique for three-dimensional analysis. Fish were collected by seining at Middle Bridge, Pettaquans...

  18. Spatio-temporal patterns of leptospirosis in Thailand: is flooding a risk factor?

    PubMed

    Suwanpakdee, S; Kaewkungwal, J; White, L J; Asensio, N; Ratanakorn, P; Singhasivanon, P; Day, N P J; Pan-Ngum, W

    2015-07-01

    We studied the temporal and spatial patterns of leptospirosis, its association with flooding and animal census data in Thailand. Flood data from 2010 to 2012 were extracted from spatial information taken from satellite images. The incidence rate ratio (IRR) was used to determine the relationship between spatio-temporal flooding patterns and the number of human leptospirosis cases. In addition, the area of flood coverage, duration of waterlogging, time lags between flood events, and a number of potential animal reservoirs were considered in a sub-analysis. There was no significant temporal trend of leptospirosis over the study period. Statistical analysis showed an inconsistent relationship between IRR and flooding across years and regions. Spatially, leptospirosis occurred repeatedly and predominantly in northeastern Thailand. Our findings suggest that flooding is less influential in leptospirosis transmission than previously assumed. High incidence of the disease in the northeastern region is explained by the fact that agriculture and animal farming are important economic activities in this area. The periodic rise and fall of reported leptospirosis cases over time might be explained by seasonal exposure from rice farming activities performed during the rainy season when flood events often occur. We conclude that leptospirosis remains an occupational disease in Thailand. PMID:25778527

  19. Spatio-Temporal Pattern Analysis for Regional Climate Change Using Mathematical Morphology

    NASA Astrophysics Data System (ADS)

    Das, M.; Ghosh, S. K.

    2015-07-01

    Of late, significant changes in climate with their grave consequences have posed great challenges on humankind. Thus, the detection and assessment of climatic changes on a regional scale is gaining importance, since it helps to adopt adequate mitigation and adaptation measures. In this paper, we have presented a novel approach for detecting spatio-temporal pattern of regional climate change by exploiting the theory of mathematical morphology. At first, the various climatic zones in the region have been identified by using multifractal cross-correlation analysis (MF-DXA) of different climate variables of interest. Then, the directional granulometry with four different structuring elements has been studied to detect the temporal changes in spatial distribution of the identified climatic zones in the region and further insights have been drawn with respect to morphological uncertainty index and Hurst exponent. The approach has been evaluated with the daily time series data of land surface temperature (LST) and precipitation rate, collected from Microsoft Research - Fetch Climate Explorer, to analyze the spatio-temporal climatic pattern-change in the Eastern and North-Eastern regions of India throughout four quarters of the 20th century.

  20. Bayesian finite Markov mixture model for temporal multi-tissue polygenic patterns.

    PubMed

    Liang, Yulan; Kelemen, Arpad

    2009-02-01

    Finite mixture models can provide the insights about behavioral patterns as a source of heterogeneity of the various dynamics of time course gene expression data by reducing the high dimensionality and making clear the major components of the underlying structure of the data in terms of the unobservable latent variables. The latent structure of the dynamic transition process of gene expression changes over time can be represented by Markov processes. This paper addresses key problems in the analysis of large gene expression data sets that describe systemic temporal response cascades and dynamic changes to therapeutic doses in multiple tissues, such as liver, skeletal muscle, and kidney from the same animals. Bayesian Finite Markov Mixture Model with a Dirichlet Prior is developed for the identifications of differentially expressed time related genes and dynamic clusters. Deviance information criterion is applied to determine the number of components for model comparisons and selections. The proposed Bayesian models are applied to multiple tissue polygenetic temporal gene expression data and compared to a Bayesian model-based clustering method, named CAGED. Results show that our proposed Bayesian Finite Markov Mixture model can well capture the dynamic changes and patterns for irregular complex temporal data. PMID:19197952

  1. Comparison of real-time phase-reconstruction methods in temporal speckle-pattern interferometry.

    PubMed

    Etchepareborda, Pablo; Bianchetti, Arturo; Veiras, Francisco E; Vadnjal, Ana Laura; Federico, Alejandro; Kaufmann, Guillermo H

    2015-09-01

    Three real-time methods for object-phase recovery are implemented and compared in temporal speckle-pattern interferometry. Empirical mode and intrinsic time-scale decompositions are used and compared as real-time nonstationary and nonlinear filtering techniques for the extraction of the spatio-temporal evolution of the object phase. The proposed real-time methods avoid the application of the Hilbert transform and improve the accuracy of the measurement by filtering under-modulated pixels using Delaunay triangulation. The performance of the proposed methods is evaluated by comparing phase-recovery accuracy and computation time by means of numerical simulations and experimental data obtained from common and simultaneous ?/2 phase-shifting heterodyne interferometry. PMID:26368890

  2. Visual Map Development Depends On The Temporal Pattern of Binocular Activity in Mice

    PubMed Central

    Zhang, Jiayi; Ackman, James; Xu, Hong-Ping; Crair, Michael C.

    2011-01-01

    Binocular competition is thought to drive eye-specific segregation in the developing visual system, potentially through Hebbian synaptic learning rules that are sensitive to correlations in afferent activity. Altering retinal activity can disrupt eye-specific segregation, but little is known about the temporal features of binocular activity that modulate visual map development. We used optogenetic techniques to directly manipulate retinal activity in vivo and identified a critical period before eye opening in mice when specific binocular features of retinal activity drive visual map development. Synchronous activation of both eyes disrupted segregation, whereas asynchronous stimulation enhanced segregation. The optogenetic stimulus applied was spatially homogenous, and accordingly retinotopy of ipsilateral projections was dramatically perturbed, but contralateral retinotopy was unaffected or even improved. These results provide direct evidence that the synchrony and precise temporal pattern of binocular retinal activity during a critical period in development regulates eye-specific segregation and retinotopy in the developing visual system. PMID:22179110

  3. Heterogeneity in hotspots: spatio-temporal patterns in neglected parasitic diseases.

    PubMed

    Lal, A; Hales, S

    2015-02-01

    Cryptosporidiosis and giardiasis have been recognized by the WHO as 'Neglected Diseases'. Minimal attention has been paid to the spatial and temporal distribution of disease incidence patterns. Using disease notification data, we detected spatio-temporal clusters of cryptosporidiosis and giardiasis across three time periods: (i) 1997-2000, (ii) 2001-2004, (iii) 2005-2008. There was substantial variation in the geographical location and timing of recurrent cryptosporidiosis and giardiasis clusters. Statistically significant (P < 0·05) giardiasis clusters tended to occur in predominantly urban areas with little apparent seasonal influence, while statistically significant cryptosporidiosis clusters were detected in spring, in areas with high livestock land use. The location and timing of cryptosporidiosis clusters suggest an influence of livestock production practices, while urban exposures and host behaviour are likely to influence giardiasis clusters. This approach provides a resource-efficient method for public health authorities to prioritize future research needs and areas for intervention. PMID:24819745

  4. Spatial and Temporal Patterns of Carbon Storage in Forest Ecosystems on Hainan Island, Southern China

    PubMed Central

    Tang, Xuli; Zhang, Qianmei; Wang, Dong; Yuan, Lianlian; Chen, Xubing

    2014-01-01

    Spatial and temporal patterns of carbon (C) storage in forest ecosystems significantly affect the terrestrial C budget, but such patterns are unclear in the forests in Hainan Province, the largest tropical island in China. Here, we estimated the spatial and temporal patterns of C storage from 1993–2008 in Hainan's forest ecosystems by combining our measured data with four consecutive national forest inventories data. Forest coverage increased from 20.7% in the 1950s to 56.4% in the 2010s. The average C density of 163.7 Mg C/ha in Hainan's forest ecosystems in this study was slightly higher than that of China's mainland forests, but was remarkably lower than that in the tropical forests worldwide. Total forest ecosystem C storage in Hainan increased from 109.51 Tg in 1993 to 279.17 Tg in 2008. Soil C accounted for more than 70% of total forest ecosystem C. The spatial distribution of forest C storage in Hainan was uneven, reflecting differences in land use change and forest management. The potential carbon sequestration of forest ecosystems was 77.3 Tg C if all forested lands were restored to natural tropical forests. To increase the C sequestration potential on Hainan Island, future forest management should focus on the conservation of natural forests, selection of tree species, planting of understory species, and implementation of sustainable practices. PMID:25229628

  5. The impact of spatial and temporal patterns on multi-cellular behavior

    NASA Astrophysics Data System (ADS)

    Nikolic, Djordje L.

    What makes a fruit fly a fruit fly? Essentially this question stems from one of the most fascinating problems in biology: how a single cell (fertilized egg) can give rise to a fully grown animal. To be able to answer this question, the importance to how spatial and temporal patterns of gene and protein expression influence the development of an organism must be understood. After all, fruit fly larvae are segmented, while fertilized eggs are not. Pattern formation is fundamental to establishing this organization of the developing embryo with the ultimate goal being the precise arrangements of specialized cells and tissues within each organ in an adult organism. The research presented here showcases the examples of studies that assess the impact spatial and temporal protein patterns have on the behavior of a collection of cells. By introducing new experimental, non-traditional techniques we developed model systems that allowed us to examine the dependence of the strength of adhesion of cells on the protein organization on sub-cellular, micron length scales, and to investigate how epithelial cell sheets coordinate their migration incorporating individual cell locomotion, molecular signal propagation and different boundary conditions. The first part of this dissertation presents a photolithography-based silanization patterning technique that allowed us to homogeneously pattern large areas with high precision. This method is then applied to organizing cell adhesion-promoting proteins on surfaces for the purposes of studying and manipulating cell behavior. We show how the strength of adhesion is dependent on high local density of an adhesive extracellular matrix protein fibronectin. The varied appeal of this technique is exhibited by showing its applicability to pattern stretched DNA, too. The second part of this dissertation focuses on the impact of spatial and temporal propagation of a molecular signal (ERK 1/2 MAPK) in migrating epithelial sheets during wound healing. By tracking the motion of individual cells within the sheet under the three constructed conditions, we show how the dynamics of the individual cells' motion is responsible for the coordinated migration of the sheet in accordance with the activation of ERK 1/2 MAPK.

  6. Temporally shaped femtosecond laser pulses as direct patterning method for dielectric materials in nanophotonic applications

    NASA Astrophysics Data System (ADS)

    Meinl, Tamara; Götte, Nadine; Khan, Yousuf; Kusserow, Thomas; Sarpe, Cristian; Köhler, Jens; Wollenhaupt, Matthias; Senftleben, Arne; Baumert, Thomas; Hillmer, Harmut

    2014-05-01

    We present a direct patterning method of dielectric materials via temporally shaped femtosecond laser pulses. A thinfilm waveguide with a 2D periodic pattern of photonic crystals with circular base elements is investigated. We use dielectrics since they are transparent especially in the visible spectral range, but also in UV and near infrared range. Thus, they are very suitable as optical filters in the very same spectral region. Since structuring of non-conductive dielectric materials suffers from charging, the implementation of laser processing as patterning method instead of conventional processing techniques like electron beam lithography or focused ion beams is a very attractive alternative. Despite a low refractive index contrast, we show by numerical results that normal incident of light to the plane of periodicity couples to a waveguide mode and can excite Fano resonances. That makes the device extremely interesting as narrow-band optical filter. Applications of optical filters in the visible and UV range require fabrication of photonic crystal structures in the sub-100 nm range. Temporally shaped femtosecond laser pulses are applied as a novel method for very high precision laser processing of wide band gap materials to create photonic crystal structures in dielectrics. Shaping temporally asymmetric pulse trains enable the production of structures well below the diffraction limit.1 We combine this process with deposition of a high refractive index layer to achieve the targeted resonant waveguide structure. Additionally, we focus on the rim formation arising by laser processing since this is an important issue for fabrication of photonic crystal arrays with small lattice constants.

  7. Global Spatio-temporal Patterns of Influenza in the Post-pandemic Era

    PubMed Central

    He, Daihai; Lui, Roger; Wang, Lin; Tse, Chi Kong; Yang, Lin; Stone, Lewi

    2015-01-01

    We study the global spatio-temporal patterns of influenza dynamics. This is achieved by analysing and modelling weekly laboratory confirmed cases of influenza A and B from 138 countries between January 2006 and January 2015. The data were obtained from FluNet, the surveillance network compiled by the the World Health Organization. We report a pattern of skip-and-resurgence behavior between the years 2011 and 2013 for influenza H1N1pdm, the strain responsible for the 2009 pandemic, in Europe and Eastern Asia. In particular, the expected H1N1pdm epidemic outbreak in 2011/12 failed to occur (or “skipped”) in many countries across the globe, although an outbreak occurred in the following year. We also report a pattern of well-synchronized wave of H1N1pdm in early 2011 in the Northern Hemisphere countries, and a pattern of replacement of strain H1N1pre by H1N1pdm between the 2009 and 2012 influenza seasons. Using both a statistical and a mechanistic mathematical model, and through fitting the data of 108 countries, we discuss the mechanisms that are likely to generate these events taking into account the role of multi-strain dynamics. A basic understanding of these patterns has important public health implications and scientific significance. PMID:26046930

  8. Global Spatio-temporal Patterns of Influenza in the Post-pandemic Era

    NASA Astrophysics Data System (ADS)

    He, Daihai; Lui, Roger; Wang, Lin; Tse, Chi Kong; Yang, Lin; Stone, Lewi

    2015-06-01

    We study the global spatio-temporal patterns of influenza dynamics. This is achieved by analysing and modelling weekly laboratory confirmed cases of influenza A and B from 138 countries between January 2006 and January 2015. The data were obtained from FluNet, the surveillance network compiled by the the World Health Organization. We report a pattern of skip-and-resurgence behavior between the years 2011 and 2013 for influenza H1N1pdm, the strain responsible for the 2009 pandemic, in Europe and Eastern Asia. In particular, the expected H1N1pdm epidemic outbreak in 2011/12 failed to occur (or “skipped”) in many countries across the globe, although an outbreak occurred in the following year. We also report a pattern of well-synchronized wave of H1N1pdm in early 2011 in the Northern Hemisphere countries, and a pattern of replacement of strain H1N1pre by H1N1pdm between the 2009 and 2012 influenza seasons. Using both a statistical and a mechanistic mathematical model, and through fitting the data of 108 countries, we discuss the mechanisms that are likely to generate these events taking into account the role of multi-strain dynamics. A basic understanding of these patterns has important public health implications and scientific significance.

  9. A polarized digital shearing speckle pattern interferometry system based on temporal wavelet transformation.

    PubMed

    Feng, Ziang; Gao, Zhan; Zhang, Xiaoqiong; Wang, Shengjia; Yang, Dong; Yuan, Hao; Qin, Jie

    2015-09-01

    Digital shearing speckle pattern interferometry (DSSPI) has been recognized as a practical tool in testing strain. The DSSPI system which is based on temporal analysis is attractive because of its ability to measure strain dynamically. In this paper, such a DSSPI system with Wollaston prism has been built. The principles and system arrangement are described and the preliminary experimental result of the displacement-derivative test of an aluminum plate is shown with the wavelet transformation method and the Fourier transformation method. The simulations have been conducted with the finite element method. The comparison of the results shows that quantitative measurement of displacement-derivative has been realized. PMID:26429424

  10. A polarized digital shearing speckle pattern interferometry system based on temporal wavelet transformation

    NASA Astrophysics Data System (ADS)

    Feng, Ziang; Gao, Zhan; Zhang, Xiaoqiong; Wang, Shengjia; Yang, Dong; Yuan, Hao; Qin, Jie

    2015-09-01

    Digital shearing speckle pattern interferometry (DSSPI) has been recognized as a practical tool in testing strain. The DSSPI system which is based on temporal analysis is attractive because of its ability to measure strain dynamically. In this paper, such a DSSPI system with Wollaston prism has been built. The principles and system arrangement are described and the preliminary experimental result of the displacement-derivative test of an aluminum plate is shown with the wavelet transformation method and the Fourier transformation method. The simulations have been conducted with the finite element method. The comparison of the results shows that quantitative measurement of displacement-derivative has been realized.

  11. Spatial and temporal patterns of dengue in Guangdong province of China.

    PubMed

    Wang, Chenggang; Yang, Weizhong; Fan, Jingchun; Wang, Furong; Jiang, Baofa; Liu, Qiyong

    2015-03-01

    The aim of the study was to describe the spatial and temporal patterns of dengue in Guangdong for 1978 to 2010. Time series analysis was performed using data on annual dengue incidence in Guangdong province for 1978-2010. Annual average dengue incidences for each city were mapped for 4 periods by using the geographical information system (GIS). Hot spot analysis was used to identify spatial patterns of dengue cases for 2005-2010 by using the CrimeStat III software. The incidence of dengue in Guangdong province had fallen steadily from 1978 to 2010. The time series was a random sequence without regularity and with no fixed cycle. The geographic range of dengue fever had expanded from 1978 to 2010. Cases were mostly concentrated in Zhanjiang and the developed regions of Pearl River Delta and Shantou. PMID:23467628

  12. Temporal patterns of happiness and information in a global social network: Hedonometrics and Twitter

    E-print Network

    Dodds, Peter Sheridan; Kloumann, Isabel M; Bliss, Catherine A; Danforth, Christopher M

    2011-01-01

    Individual happiness is a fundamental societal metric. Normally measured through self-report, happiness has often been indirectly characterized and overshadowed by more readily quantifiable economic indicators, such as gross domestic product. Here, we use a real-time, remote-sensing, non-invasive, text-based approach---a kind of hedonometer---to uncover collective dynamical patterns of happiness levels expressed by over 50 million users in the online, global social network Twitter. With a data set comprising nearly 2.8 billion expressions involving more than 28 billion words, we explore temporal variations in happiness, as well as information levels, over time scales of hours, days, and months. Among many observations, we find a steady global happiness level, evidence of universal weekly and daily patterns of happiness and information, and that happiness and information levels are generally uncorrelated. We also extract and analyse a collection of happiness and information trends based on keywords, showing th...

  13. Spatio-temporal EEG power spectral patterns during a short daytime nap.

    PubMed

    Luo, Z; Honda, K; Inoué, S

    2001-06-01

    This is an approach to investigate topographic changes in electroencephalographic (EEG) spectral power during pre- and post-nap wakefulness as well as stages 1 (S1) and 2 (S2) NREM sleep in 12 subjects. Delta- and theta-band power significantly increased in the frontal and central regions during S1 and S2 with an increase in inter- and intra-hemispheric correlations. Beta-band power significantly increased in the frontal, central and parietal regions during S2 with an increase in interhemispheric correlation. In contrast, alpha-band power significantly decreased in the parietal-occipital regions during S1 and S2 with a decrease in interhemispheric correlation. Thus, daytime nap modulated spatio-temporal patterns of EEG power spectral patterns in wide scalp regions. PMID:11422838

  14. Altered temporal patterns of anxiety in aged and amyloid precursor protein (APP) transgenic mice

    PubMed Central

    Bedrosian, Tracy A.; Herring, Kamillya L.; Weil, Zachary M.; Nelson, Randy J.

    2011-01-01

    Both normal aging and dementia are associated with dysregulation of the biological clock, which contributes to disrupted circadian organization of physiology and behavior. Diminished circadian organization in conjunction with the loss of cholinergic input to the cortex likely contributes to impaired cognition and behavior. One especially notable and relatively common circadian disturbance among the aged is “sundowning syndrome,” which is characterized by exacerbated anxiety, agitation, locomotor activity, and delirium during the hours before bedtime. Sundowning has been reported in both dementia patients and cognitively intact elderly individuals living in institutions; however, little is known about temporal patterns in anxiety and agitation, and the neurobiological basis of these rhythms remains unspecified. In the present study, we explored the diurnal pattern of anxiety-like behavior in aged and amyloid precursor protein (APP) transgenic mice. We then attempted to treat the observed behavioral disturbances in the aged mice using chronic nightly melatonin treatment. Finally, we tested the hypothesis that time-of-day differences in acetylcholinesterase and choline acetyltransferase expression and general neuronal activation (i.e., c-Fos expression) coincide with the behavioral symptoms. Our results show a temporal pattern of anxiety-like behavior that emerges in elderly mice. This behavioral pattern coincides with elevated locomotor activity relative to adult mice near the end of the dark phase, and with time-dependent changes in basal forebrain acetylcholinesterase expression. Transgenic APP mice show a similar behavioral phenomenon that is not observed among age-matched wild-type mice. These results may have useful applications to the study and treatment of age- and dementia-related circadian behavioral disturbances, namely, sundowning syndrome. PMID:21709248

  15. Measuring the scaling properties of temporal and spatial patterns: from the human eye to the foraging albatross

    E-print Network

    Taylor, Richard

    Measuring the scaling properties of temporal and spatial patterns: from the human eye, we will move on to a physical system ­ movements of the human eye as a person looks at patterns projected on a screen. The human eye is chosen because it highlights the challenges of interpreting real

  16. Gender Differences in Speech Temporal Patterns Detected Using Lagged Co-Occurrence Text-Analysis of Personal Narratives

    ERIC Educational Resources Information Center

    Cohen, Shuki J.

    2009-01-01

    This paper describes a novel methodology for the detection of speech patterns. Lagged co-occurrence analysis (LCA) utilizes the likelihood that a target word will be uttered in a certain position after a trigger word. Using this methodology, it is possible to uncover a statistically significant repetitive temporal patterns of word use, compared to…

  17. Evaluation of the Temporal Acoustic Window for Transcranial Doppler in a Multi-Ethnic Population in Brazil.

    PubMed

    Bazan, Rodrigo; Braga, Gabriel Pereira; Luvizutto, Gustavo José; Hueb, João Carlos; Hokama, Newton Key; Zanati Bazan, Silméia Garcia; de Carvalho Nunes, Hélio Rubens; Leite, João Pereira; Pontes-Neto, Octávio Marques

    2015-08-01

    The aim of this study was to relate the presence of a temporal acoustic window (TAW) to the variables sex, age and race. This observational study was conducted in patients under etiologic investigation after stroke, sickle-cell anemia and hospitalization in an intensive therapy neurologic unit. TAW presence was confirmed by bilateral assessment by two neurologists via transcranial Doppler (TCD). Multiple logistic regression was performed to explain the presence of the window as a function of sex, age and race. In 20% of the 262 patients evaluated, a TAW was not present. The incidence of TAW presence was greater in men (odds ratio [OR] = 5.4, 95% confidence interval [CI] = 2.5-11.7, p < 0.01); lower with increased age (OR = 0.9, 95% CI = 0.92-0.97, p < 0.01); and lower among those of African and Asian descent (OR = 0.32, 95% CI = 0.14-0.70, p = 0.005). On the basis of the results, more men than women had TAWs, and the decrease in TAWs was associated with increased age and African or Asian descent. PMID:25964064

  18. Spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks (Invited)

    NASA Astrophysics Data System (ADS)

    McGlynn, B. L.; Nippgen, F.; Jencso, K. G.; Emanuel, R. E.

    2013-12-01

    Congress enacted the Clean Water Act (CWA) 'to restore and maintain the chemical, physical, and biological integrity of the Nation's waters'. A recent Supreme Court decision further described protection for waters with 'a significant nexus to navigable waters" if they are in the same watershed and have an effect on the chemical, physical, or biological integrity of traditional navigable waters or interstate waters that is more than 'speculative or insubstantial.' Evolving interpretation of the CWA and 'significant nexus' (connectivity) requires investigation and understanding of the spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks that mediate streamflow magnitude and composition. While hydrologic connectivity is a continuum, strong non-linearities including the shift from unsaturated to saturated flow conditions lead to threshold or transient connectivity behavior and orders of magnitude changes in flow velocities and source water compositions. Here we illustrate the spatial and temporal dynamics of hydrologic connectivity between upland landscapes and stream networks that provide direct and proximate links between streamflow composition and its watershed sources. We suggest that adjacency alone does not determine influence on hydrologic response and streamwater composition and that new understanding and communication of the temporal and spatial dynamics of watershed connectivity are required to address urgent needs at the interface of the CWA, science, and society.

  19. Spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks

    NASA Astrophysics Data System (ADS)

    McGlynn, B. L.; Jencso, K. G.; Nippgen, F.; Emanuel, R. E.; Marshall, L. A.; Gooseff, M. N.

    2012-12-01

    Congress enacted the Clean Water Act (CWA) "to restore and maintain the chemical, physical, and biological integrity of the Nation's waters". A recent Supreme Court decision further described protection for waters with "a significant nexus to navigable waters" if they are in the same watershed and have an effect on the chemical, physical, or biological integrity of traditional navigable waters or interstate waters that is more than "speculative or insubstantial." Evolving interpretation of the CWA and "significant nexus" (connectivity) requires investigation and understanding of the spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks that mediate streamflow magnitude and composition. While, hydrologic connectivity is a continuum, strong non-linearities including the shift from unsaturated to saturated flow conditions lead to threshold or transient connectivity behavior and orders of magnitude changes in flow velocities. Here we illustrate the spatial and temporal dynamics of hydrologic connectivity between upland landscapes and stream networks that provide direct and proximate links between streamflow composition and its watershed sources. New understanding and communication of the temporal and spatial scales of watershed connectivity are required to address urgent needs at the interface of the CWA, science, and society.

  20. Spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks (Invited)

    NASA Astrophysics Data System (ADS)

    Ma, L.; Qi, Z.; Helmers, M. J.; Ahuja, L. R.; Malone, R. W.

    2011-12-01

    Congress enacted the Clean Water Act (CWA) 'to restore and maintain the chemical, physical, and biological integrity of the Nation's waters'. A recent Supreme Court decision further described protection for waters with 'a significant nexus to navigable waters" if they are in the same watershed and have an effect on the chemical, physical, or biological integrity of traditional navigable waters or interstate waters that is more than 'speculative or insubstantial.' Evolving interpretation of the CWA and 'significant nexus' (connectivity) requires investigation and understanding of the spatial and temporal patterns of hydrologic connectivity between upland landscapes and stream networks that mediate streamflow magnitude and composition. While hydrologic connectivity is a continuum, strong non-linearities including the shift from unsaturated to saturated flow conditions lead to threshold or transient connectivity behavior and orders of magnitude changes in flow velocities and source water compositions. Here we illustrate the spatial and temporal dynamics of hydrologic connectivity between upland landscapes and stream networks that provide direct and proximate links between streamflow composition and its watershed sources. We suggest that adjacency alone does not determine influence on hydrologic response and streamwater composition and that new understanding and communication of the temporal and spatial dynamics of watershed connectivity are required to address urgent needs at the interface of the CWA, science, and society.

  1. Self-Organization of Spatio-Temporal Hierarchy via Learning of Dynamic Visual Image Patterns on Action Sequences

    PubMed Central

    Jung, Minju; Hwang, Jungsik; Tani, Jun

    2015-01-01

    It is well known that the visual cortex efficiently processes high-dimensional spatial information by using a hierarchical structure. Recently, computational models that were inspired by the spatial hierarchy of the visual cortex have shown remarkable performance in image recognition. Up to now, however, most biological and computational modeling studies have mainly focused on the spatial domain and do not discuss temporal domain processing of the visual cortex. Several studies on the visual cortex and other brain areas associated with motor control support that the brain also uses its hierarchical structure as a processing mechanism for temporal information. Based on the success of previous computational models using spatial hierarchy and temporal hierarchy observed in the brain, the current report introduces a novel neural network model for the recognition of dynamic visual image patterns based solely on the learning of exemplars. This model is characterized by the application of both spatial and temporal constraints on local neural activities, resulting in the self-organization of a spatio-temporal hierarchy necessary for the recognition of complex dynamic visual image patterns. The evaluation with the Weizmann dataset in recognition of a set of prototypical human movement patterns showed that the proposed model is significantly robust in recognizing dynamically occluded visual patterns compared to other baseline models. Furthermore, an evaluation test for the recognition of concatenated sequences of those prototypical movement patterns indicated that the model is endowed with a remarkable capability for the contextual recognition of long-range dynamic visual image patterns. PMID:26147887

  2. Changes in temporal acuity with age and with hearing impairment in the mouse: A study of the acoustic startle reflex

    E-print Network

    Makous, Walter

    of the acoustic startle reflex and its inhibition by brief decrements in noise level James R. Ison, Punit Agrawal inhibition of the acoustic startle reflex ASR increased with gap depth GD: 10­40 dB in 70 dB SPL noise inhibits the acoustic startle reflex ASR if it is presented immediately before the noise burst that nor

  3. Population dynamics of wetland fishes: Spatio-temporal patterns synchronized by hydrological disturbance?

    USGS Publications Warehouse

    Ruetz, C. R., III; Trexler, J.C.; Jordan, F.; Loftus, W.F.; Perry, S.A.

    2005-01-01

    1. Drought is a natural disturbance that can cause widespread mortality of aquatic organisms in wetlands. We hypothesized that seasonal drying of marsh surfaces (i.e. hydrological disturbance) shapes spatio-temporal patterns of fish populations. 2. We tested whether population dynamics of fishes were synchronized by hydrological disturbance (Moran effect) or distance separating study sites (dispersal). Spatio-temporal patterns were examined in local populations of five abundant species at 17 sites (sampled five times per year from 1996 to 2001) in a large oligotrophic wetland. 3. Fish densities differed significantly across spatio-temporal scales for all species. For all species except eastern mosquitofish (Gambusia holbrooki), a significant portion of spatio-temporal variation in density was attributed to drying events (used as a covariate). 4. We observed three patterns of response to hydrological disturbance. Densities of bluefin killifish (Lucania goodei), least killifish (Heterandria formosa), and golden top-minnow (Fundulus chrysotus) were usually lowest after a dry down and recovered slowly. Eastern mosquitofish showed no distinct response to marsh drying (i.e. they recovered quickly). Flagfish (Jordanella floridae) density was often highest after a dry down and then declined. Population growth after a dry down was often asymptotic for bluefin killifish and golden topminnow, with greatest asymptotic density and longest time to recovery at sites that dried infrequently. 5. Fish population dynamics were synchronized by hydrological disturbance (independent of distance) and distance separating study sites (independent of hydrological disturbance). Our ability to separate the relative importance of the Moran effect from dispersal was strengthened by a weak association between hydrological synchrony and distance among study sites. Dispersal was the primary mechanism for synchronous population dynamics of flagfish, whereas hydrological disturbance was the primary mechanism for synchronous population dynamics of the other species examined. 6. Species varied in the relative role of the Moran effect and dispersal in homogenizing their population dynamics, probably as a function of life history and ability to exploit dry-season refugia. ?? 2005 British Ecological Society.

  4. Spatial and temporal patterns in modeled particle transport to estuarine habitat with comparisons to larval fish settlement patterns

    NASA Astrophysics Data System (ADS)

    Brown, C. A.; Jackson, G. A.; Holt, S. A.; Holt, G. J.

    2005-07-01

    Larval fish settlement in estuarine nursery areas is the end result of numerous biological and physical processes. We used a numerical circulation model coupled to a particle transport model to examine the role that physics play in determining settlement patterns of red drum larvae ( Sciaenops ocellatus) in nursery habitat along the Texas coast. We examined supply at various spatial scales (supply to inlet, bays, and individual settlement sites). Temporal patterns in larval settlement in Aransas Bay, Texas, are correlated with several indices of modeled particle supply (number of particles inside the bays, integrated particle input to Lydia Ann Channel, and cumulative number of competent particles in Lydia Ann Channel). High abundances of recently settled red drum in Aransas Bay result from a combination of high larval input, limited habitat for settlement, and proximity of habitat to the inlet. In contrast, larval settlement in Corpus Christi and Redfish Bays does not appear to be related to modeled measures of larval supply. Modeled particle supply at the bay-scale suggests that difference in the abundance of recently settled red drum between the bays may be related to larval supply normalized by the amount available settlement habitat within the bay.

  5. Hyperpigmentation in North Sea dab Limanda limanda. I. Spatial and temporal patterns and host effects.

    PubMed

    Grütjen, F; Lang, T; Feist, S; Bruno, D; Noguera, P; Wosniok, W

    2013-03-13

    Hyperpigmentation is a term describing a specific pigment anomaly affecting common dab Limanda limanda in the North Sea and, less frequently, in adjacent areas, e.g. the English Channel, Irish and Celtic Seas, western Baltic Sea and Icelandic waters. Other North Sea flatfish species are also affected, but at a markedly lower prevalence. The condition is characterised by the occurrence of varying degrees of green to black patchy pigment spots in the skin of the upper (ocular) body side and pearly-white pigment spots in the skin of the lower (abocular) body side. In the course of fish disease monitoring programmes carried out by Germany and the UK (England and Scotland), a pronounced spatial pattern of hyperpigmentation has been detected in the North Sea. An increase in prevalence has been recorded in almost all North Sea areas studied in the past 2 decades. The prevalence recorded in hot spot areas of the condition increased from 5 to >40% between 1988 and 2009. Analysis of the German data indicates that the prevalence and intensity (degree of discolouration) of hyperpigmentation increase with size and age, indicating a temporal progression of the condition with size and age. Intense hyperpigmentation is associated with increased growth (length) and decreased condition factor. Potential causes of the condition (UV-B radiation nutrition, water temperature increase, demographic changes) and, in particular, of the spatial/temporal patterns recorded as well as the relationship to host-specific factors (sex, age, length, growth, condition factor) are discussed. PMID:23482381

  6. Temporal patterns of genetic and phenotypic variation in the epidemiologically important drone fly, Eristalis tenax.

    PubMed

    Francuski, Lj; Mati?, I; Ludoški, J; Milankov, V

    2011-06-01

    Eristalis tenax L. (Diptera: Syrphidae) is commonly known as the drone fly (adult) or rat-tailed maggot (immature). Both adults and immature stages are identified as potential mechanical vectors of mycobacterial pathogens, and early-stage maggots cause accidental myiasis. We compared four samples from Mount Fruška Gora, Serbia, with the aim of obtaining insights into the temporal variations and sexual dimorphism in the species. This integrative approach was based on allozyme loci, morphometric wing parameters (shape and size) and abdominal colour patterns. Consistent sexual dimorphism was observed, indicating that male specimens had lighter abdomens and smaller and narrower wings than females. The distribution of genetic diversity at polymorphic loci indicated genetic divergence among collection dates. Landmark-based geometric morphometrics revealed, contrary to the lack of divergence in wing size, significant wing shape variation throughout the year. In addition, temporal changes in the frequencies of the abdominal patterns observed are likely to relate to the biology of the species and ecological factors in the locality. Hence, the present study expands our knowledge of the genetic diversity and phenotypic plasticity of E. tenax. The quantification of such variability represents a step towards the evaluation of the adaptive potential of this species of medical and epidemiological importance. PMID:21414022

  7. Spatial and temporal patterns of enzootic raccoon rabies adjusted for multiple covariates

    PubMed Central

    Recuenco, Sergio; Eidson, Millicent; Kulldorff, Martin; Johnson, Glen; Cherry, Bryan

    2007-01-01

    Background With the objective of identifying spatial and temporal patterns of enzootic raccoon variant rabies, a spatial scan statistic was utilized to search for significant terrestrial rabies clusters by year in New York State in 1997–2003. Cluster analyses were unadjusted for other factors, adjusted for covariates, and adjusted for covariates and large scale geographic variation (LSGV). Adjustments were intended to identify the unusual aggregations of cases given the expected distribution based on the observed locations. Results Statistically significant clusters were identified particularly in the Albany, Finger Lakes, and South Hudson areas. The clusters were generally persistent in the Albany area, but demonstrated cyclical changes in rabies activity every few years in the other areas. Cluster adjustments allowed the discussion of possible causes for the high risk raccoon rabies areas identified. Conclusion This study analyzed raccoon variant rabies spatial and temporal patterns in New York that have not been previously described at a focal (census tract) level. Comparisons across the type of spatial analysis performed with various degrees of adjustment allow consideration of the potential influence of geographical factors for raccoon rabies and possible reasons for the highest risk areas (statistically significant clusters). PMID:17428324

  8. Temporal patterns of human behaviour: are there signs of deterministic 1/ f scaling?

    NASA Astrophysics Data System (ADS)

    Dünki, Rudolf M.; Keller, Elvira; Meier, Peter F.; Ambühl, Brigitte

    2000-02-01

    Temporal patterns apparently exhibiting scaling properties may originate either from fractal stochastic processes or from causal (i.e., deterministic) dynamics. In general, the distinction between the possible two origins remains a non-trivial task. This holds especially for the interpretation of properties derived from temporal patterns of various types of human behaviour, which were reported repeatedly. We propose here a computational scheme based on a generic intermittency model to test predictability (thus determinism) of a part of a time series with knowledge gathered from another part. The method is applied onto psychodynamic time series related to turns from non-psychosis to psychosis. A nonrandom correlation ( ?=0.76) between prediction and real outcome is found. Our scheme thus provides a particular kind of fractal risk-assessment for this possibly deterministic process. We briefly discuss possible implications of these findings to evaluate the risk to undergo a state transition, in our case a patients risk to enter a next psychotic state. We further point to some problems concerning data sample pecularities and equivalence between data and model setup.

  9. Coexistence of productive and non-productive populations by fluctuation-driven spatio-temporal patterns.

    PubMed

    Behar, Hilla; Brenner, Naama; Louzoun, Yoram

    2014-09-01

    Cooperative interactions, their stability and evolution, provide an interesting context in which to study the interface between cellular and population levels of organization. Here we study a public goods model relevant to microorganism populations actively extracting a growth resource from their environment. Cells can display one of two phenotypes - a productive phenotype that extracts the resources at a cost, and a non-productive phenotype that only consumes the same resource. Both proliferate and are free to move by diffusion; growth rate and diffusion coefficient depend only weakly phenotype. We analyze the continuous differential equation model as well as simulate stochastically the full dynamics. We find that the two sub-populations, which cannot coexist in a well-mixed environment, develop spatio-temporal patterns that enable long-term coexistence in the shared environment. These patterns are purely fluctuation-driven, as the corresponding continuous spatial system does not display Turing instability. The average stability of coexistence patterns derives from a dynamic mechanism in which the producing sub-population equilibrates with the environmental resource and holds it close to an extinction transition of the other sub-population, causing it to constantly hover around this transition. Thus the ecological interactions support a mechanism reminiscent of self-organized criticality; power-law distributions and long-range correlations are found. The results are discussed in the context of general pattern formation and critical behavior in ecology as well as in an experimental context. PMID:25058368

  10. Temporal Links in Daily Activity Patterns between Coral Reef Predators and Their Prey

    PubMed Central

    Bosiger, Yoland J.; McCormick, Mark I.

    2014-01-01

    Few studies have documented the activity patterns of both predators and their common prey over 24 h diel cycles. This study documents the temporal periodicity of two common resident predators of juvenile reef fishes, Cephalopholis cyanostigma (rockcod) and Pseudochromis fuscus (dottyback) and compares these to the activity and foraging pattern of a common prey species, juvenile Pomacentrus moluccensis (lemon damselfish). Detailed observations of activity in the field and using 24 h infrared video in the laboratory revealed that the two predators had very different activity patterns. C. cyanostigma was active over the whole 24 h period, with a peak in feeding strikes at dusk and increased activity at both dawn and dusk, while P. fuscus was not active at night and had its highest strike rates at midday. The activity and foraging pattern of P. moluccensis directly opposes that of C. cyanostigma with individuals reducing strike rate and intraspecific aggression at both dawn and dusk, and reducing distance from shelter and boldness at dusk only. Juveniles examined were just outside the size-selection window of P. fuscus. We suggest that the relatively predictable diel behaviour of coral reef predators results from physiological factors such as visual sensory abilities, circadian rhythmicity, variation in hunting profitability, and predation risk at different times of the day. Our study suggests that the diel periodicity of P. moluccensis behaviour may represent a response to increased predation risk at times when both the ability to efficiently capture food and visually detect predators is reduced. PMID:25354096

  11. Himalayan glaciers: understanding contrasting patterns of glacier behavior using multi-temporal satellite imagery

    NASA Astrophysics Data System (ADS)

    Racoviteanu, A.

    2014-12-01

    High rates of glacier retreat for the last decades are often reported, and believed to be induced by 20th century climate changes. However, regional glacier fluctuations are complex, and depend on a combination of climate and local topography. Furthermore, in ares such as the Hindu-Kush Himalaya, there are concerns about warming, decreasing monsoon precipitation and their impact on local glacier regimes. Currently, the challenge is in understanding the magnitude of feedbacks between large-scale climate forcing and small-scale glacier behavior. Spatio-temporal patterns of glacier distribution are still llimited in some areas of the high Hindu-Kush Himalaya, but multi-temporal satellite imagery has helped fill spatial and temporal gaps in regional glacier parameters in the last decade. Here I present a synopsis of the behavior of glaciers across the Himalaya, following a west to east gradient. In particular, I focus on spatial patterns of glacier parameters in the eastern Himalaya, which I investigate at multi-spatial scales using remote sensing data from declassified Corona, ASTER, Landsat ETM+, Quickbird and Worldview2 sensors. I also present the use of high-resolution imagery, including texture and thermal analysis for mapping glacier features at small scale, which are particularly useful in understanding surface trends of debris-covered glaciers, which are prevalent in the Himalaya. I compare and contrast spatial patterns of glacier area and élévation changes in the monsoon-influenced eastern Himalaya (the Everest region in the Nepal Himalaya and Sikkim in the Indian Himalaya) with other observations from the dry western Indian Himalaya (Ladakh and Lahul-Spiti), both field measurements and remote sensing-based. In the eastern Himalaya, results point to glacier area change of -0.24 % ± 0.08% per year from the 1960's to the 2006's, with a higher rate of retreat in the last decade (-0.43% /yr). Debris-covered glacier tongues show thinning trends of -30.8 m± 39 m on average over the last four decades, similar to other studies in the same climatic area. However, at small scales, the behavior of glaciers is highly heterogenous, with contrasting patterns of thickening glacier termini versus retreating nad thinning glacier tongues.

  12. A review on the temporal pattern of deer-vehicle accidents: impact of seasonal, diurnal and lunar effects in cervids.

    PubMed

    Steiner, Wolfgang; Leisch, Friedrich; Hackländer, Klaus

    2014-05-01

    The increasing number of deer-vehicle-accidents (DVAs) and the resulting economic costs have promoted numerous studies on behavioural and environmental factors which may contribute to the quantity, spatiotemporal distribution and characteristics of DVAs. Contrary to the spatial pattern of DVAs, data of their temporal pattern is scarce and difficult to obtain because of insufficient accuracy in available datasets, missing standardization in data aquisition, legal terms and low reporting rates to authorities. Literature of deer-traffic collisions on roads and railways is reviewed to examine current understanding of DVA temporal trends. Seasonal, diurnal and lunar peak accident periods are identified for deer, although seasonal pattern are not consistent among and within species or regions and data on effects of lunar cycles on DVAs is almost non-existent. Cluster analysis of seasonal DVA data shows nine distinct clusters of different seasonal DVA pattern for cervid species within the reviewed literature. Studies analyzing the relationship between time-related traffic predictors and DVAs yield mixed results. Despite the seasonal dissimilarity, diurnal DVA pattern are comparatively constant in deer, resulting in pronounced DVA peaks during the hours of dusk and dawn frequently described as bimodal crepuscular pattern. Behavioural aspects in activity seem to have the highest impact in DVAs temporal trends. Differences and variations are related to habitat-, climatic- and traffic characteristics as well as effects of predation, hunting and disturbance. Knowledge of detailed temporal DVA pattern is essential for prevention management as well as for the application and evaluation of mitigation measures. PMID:24549035

  13. [Spatial and temporal patterns of stream fish assemblages in the Qiupu Headwaters National Wetland Park].

    PubMed

    Wang, Wen-Jian; Chu, Ling; Si, Chun; Zhu, Ren; Chen, Wen-Hao; Chen, Fang-Ming; Yan, Yun-Zhi

    2013-08-01

    Identifying and clarifying how stream fish assemblage patterns vary spatially and temporally are basic measures for the conservation and management of fish species. Based on data collected from 24 wadeable reaches within the Qiupu Headwaters National Wetland Park between May and October 2012, we examined the spatial and temporal patterns of the assemblage structures and diversities, collecting a total of 29 fish species belonging to four orders and ten families. The results of our survey showed influences of local habitat and tributary spatial position variables on fish assemblages. Fish diversity showed significant variations across stream-orders and seasons, which were higher in the second-order streams than in first-order streams and higher in October than in May. Habitat factors such as substrate coarseness and heterogeneity, water temperature and water depth, as well as tributary position factor-link, showed significant effects on fish diversity. Fish assemblages fitted the nested pattern that upstream assemblages presented as a nested subset of downstream assemblages. Fish assemblage structures did not vary significantly across seasons but did across stream-orders; fish assemblages between first- and second-order streams showed significant differences despite some overlap. These spatial differences mainly resulted from spatial variations of the relative abundance of Cobitis rarus, Ctenogobius sp., Zacco platypus, Phoxinus oxycephalus, Rhodeus ocellatus and Vanmanenia stenosoma, among which P. oxycephalus had higher abundance in first-order than in second-order streams but the other five species were more abundant in second-order streams. Fish assemblage structures were significantly related to substrate heterogeneity, water depth, stream order, link and C-link. PMID:23913894

  14. Seasonal and temporal patterns of NDMA formation potentials in surface waters.

    PubMed

    Uzun, Habibullah; Kim, Daekyun; Karanfil, Tanju

    2015-02-01

    The seasonal and temporal patterns of N-nitrosodimethylamine (NDMA) formation potentials (FPs) were examined with water samples collected monthly for 21 month period in 12 surface waters. This long term study allowed monitoring the patterns of NDMA FPs under dynamic weather conditions (e.g., rainy and dry periods) covering several seasons. Anthropogenically impacted waters which were determined by high sucralose levels (>100 ng/L) had higher NDMA FPs than limited impacted sources (<100 ng/L). In most sources, NDMA FP showed more variability in spring months, while seasonal mean values remained relatively consistent. The study also showed that watershed characteristics played an important role in the seasonal and temporal patterns. In the two dam-controlled river systems (SW A and G), the NDMA FP levels at the downstream sampling locations were controlled by the NDMA levels in the dams independent of either the increases in discharge rates due to water releases from the dams prior to or during the heavy rain events or intermittent high NDMA FP levels observed at the upstream of dams. The large reservoirs and impoundments on rivers examined in this study appeared serving as an equalization basin for NDMA precursors. On the other hand, in a river without an upstream reservoir (SW E), the NDMA levels were influenced by the ratio of an upstream wastewater treatment plant (WWTP) effluent discharge to the river discharge rate. The impact of WWTP effluent decreased during the high river flow periods due to rain events. Linear regression with independent variables DOC, DON, and sucralose yielded poor correlations with NDMA FP (R(2) < 0.27). Multiple linear regression analysis using DOC and log [sucralose] yielded a better correlation with NDMA FP (R(2) = 0.53). PMID:25481075

  15. Optimization of the temporal pattern of radiation: An IMRT based study

    SciTech Connect

    Altman, Michael B.; Chmura, Steven J.; Deasy, Joseph O.; Roeske, John C. . E-mail: roeske@rover.uchicago.edu

    2006-11-01

    Purpose: To investigate how the temporal pattern of dose applied during a single-intensity modulated radiation therapy (IMRT) fraction can be arranged to maximize or minimize cell kill. Methods and Materials: Using the linear-quadratic repair-time model and a simplified IMRT delivery pattern model, the surviving fraction of cells for a single fraction was calculated for all permutations of the dose delivery pattern for an array of clinically based IMRT cases. Maximization of cell kill was achieved by concentrating the highest doses in the middle of a fraction, while minimization was achieved by spreading the highest doses between the beginning and end. The percent difference between maximum and minimum cell kill (%Diff{sub min/max}) and the difference between maximum and minimum total doses normalized to 2 Gy/fx ({delta}NTD{sub 2Gy}) was calculated for varying fraction durations (T), {alpha}/{beta} ratios, and doses/fx. Results: %Diff{sub min/max} and {delta}NTD{sub 2Gy} both increased with increasing T and with decreasing {alpha}/{beta}. The largest increases occurred with dose/fx. With {alpha}/{beta} = 3 Gy and 30 min/fx, %Diff{sub min/max} ranged from 2.7-5.3% for 2 Gy/fx to 48.6-74.1% for 10 Gy/fx, whereas {delta}NTD{sub 2Gy} ranged from 1.2 Gy-2.4 Gy for 30 fractions of 2 Gy/fx to 2.3-4.8 Gy for 2 fractions of 10.84 Gy/fx. Using {alpha}/{beta} = 1.5 Gy, an analysis of prostate hypofractionation schemes yielded differences in clinical outcome based on the pattern of applied dose ranging from 3.2%-6.1% of the treated population. Conclusions: Rearrangement of the temporal pattern of dose for a single IMRT fraction could be used to optimize cell kill and to directly, though modestly, affect treatment outcome.

  16. Spatial and temporal patterns of seagrass habitat use by fishes at the Ryukyu Islands, Japan

    NASA Astrophysics Data System (ADS)

    Nakamura, Yohei; Tsuchiya, Makoto

    2008-01-01

    To investigate whether or not regional-temporal patterns of seagrass habitat use by fishes existed at the Ryukyu Islands (southern Japan), visual surveys were conducted in seagrass beds and adjacent coral reefs in northern, central, and southern Ryukyu Islands, in November 2004, and May, August, and November 2005, the northern region having less extensive seagrass beds compared with the central and southern regions. During the study period, the seagrass beds were utilized primarily by 31 species, the densities of some of the latter differing significantly among regions. With the exception of Apogonidae and Holocentridae, all species were diurnal and could be divided into 6 groups based on seagrass habitat use patterns; (1) permanent residents A (10 species, e.g. Stethojulis strigiventer), juveniles and adults living in seagrass beds as well as other habitats; (2) permanent residents B (5 species, e.g. Calotomus spinidens), juveniles and adults living only or mainly in seagrass beds; (3) seasonal residents A (4 species, e.g. Cheilodipterus quinquelineatus), juveniles living in seagrass beds as well as other habitats; (4) seasonal residents B (6 species, e.g. Lethrinus atkinsoni), juveniles living only or mainly in seagrass beds; (5) transients (5 species, e.g. Parupeneus indicus), occurring in seagrass beds in the course of foraging over a variety of habitats; and (6) casual species (1 species, Acanthurus blochii), occurring only occasionally in seagrass beds. Regarding temporal differences, juvenile densities in each group were high in May and August compared with November in each region, whereas adult densities did not differ drastically in each month. For regional differences, juvenile and adult densities of permanent residents A and B were higher in the southern and central regions than in the northern region. Moreover, some seasonal residents showed possible ontogenetic habitat shift from seagrass beds to coral reefs in each region. These results indicated that seagrass habitat use patterns by fishes changed temporally and regionally and there may be habitat connectivity between seagrass beds and coral reefs via ontogenetic migration in the Ryukyu Islands.

  17. User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm.

    PubMed

    Bourobou, Serge Thomas Mickala; Yoo, Younghwan

    2015-01-01

    This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things) based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen's temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home. PMID:26007738

  18. User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm

    PubMed Central

    Bourobou, Serge Thomas Mickala; Yoo, Younghwan

    2015-01-01

    This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things) based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen’s temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home. PMID:26007738

  19. Temporal and spatial patterns of mass flowerings on the Malay Peninsula.

    PubMed

    Numata, Shinya; Yasuda, Masatoshi; Okuda, Toshinori; Kachi, Naoki; Noor, Nur Supandi Md

    2003-07-01

    We propose a hypothesis to explain the temporal and spatial patterns of mass flowerings in dipterocarp tree species on the Malay Peninsula. The literature on these mass flowerings reveals that during 1980-2002 at least 11 flowerings occurred at irregular intervals of 1-6 yr in a lowland rain forest. Five of them were typical mass flowerings-a high density of flowering trees and the characteristic sequential flowering of Shorea species. The 11 flowerings were classified into two flowering times: spring and autumn. There is evidence that low temperature and drought triggered the flowerings. Therefore, the seasonality of mass flowerings is characterized by the annual patterns of rainfall and low temperature. In addition, changes in El Niño-Southern Oscillation (ENSO) may play important roles in determining the supra-annual occurrence of mass flowerings. Flowering surveys on the Malay Peninsula implied that regions with spring or autumn mass flowerings corresponded geographically to those regions that had one cool season (December-February) or two (December-February and June-August), respectively. This finding anticipates the seasonal pattern and geographical distribution of mass flowerings on the Malay Peninsula. PMID:21659201

  20. The spatial and temporal distributions of arthropods in forest canopies: uniting disparate patterns with hypotheses for specialisation.

    PubMed

    Wardhaugh, Carl W

    2014-11-01

    Arguably the majority of species on Earth utilise tropical rainforest canopies, and much progress has been made in describing arboreal assemblages, especially for arthropods. The most commonly described patterns for tropical rainforest insect communities are host specificity, spatial specialisation (predominantly vertical stratification), and temporal changes in abundance (seasonality and circadian rhythms). Here I review the recurrent results with respect to each of these patterns and discuss the evolutionary selective forces that have generated them in an attempt to unite these patterns in a holistic evolutionary framework. I propose that species can be quantified along a generalist-specialist scale not only with respect to host specificity, but also other spatial and temporal distribution patterns, where specialisation is a function of the extent of activity across space and time for particular species. When all of these distribution patterns are viewed through the paradigm of specialisation, hypotheses that have been proposed to explain the evolution of host specificity can also be applied to explain the generation and maintenance of other spatial and temporal distribution patterns. The main driver for most spatial and temporal distribution patterns is resource availability. Generally, the distribution of insects follows that of the resources they exploit, which are spatially stratified and vary temporally in availability. Physiological adaptations are primarily important for host specificity, where nutritional and chemical variation among host plants in particular, but also certain prey species and fungi, influence host range. Physiological tolerances of abiotic conditions are also important for explaining the spatial and temporal distributions of some insect species, especially in drier forest environments where desiccation is an ever-present threat. However, it is likely that for most species in moist tropical rainforests, abiotic conditions are valuable indicators of resource availability, rather than physiologically limiting factors. Overall, each distribution pattern is influenced by the same evolutionary forces, but at differing intensities. Consequently, each pattern is linked and not mutually exclusive of the other distribution patterns. Most studies have examined each of these patterns in isolation. Future work should focus on examining the evolutionary drivers of these patterns in concert. Only then can the relative strength of resource availability and distribution, host defensive phenotypes, and biotic and abiotic interactions on insect distribution patterns be determined. PMID:24581118

  1. Buoyancy characteristics of the bloater (Coregonus hoyi) in relation to patterns of vertical migration and acoustic backscattering

    USGS Publications Warehouse

    Fleischer, Guy W.; TeWinkel, Leslie M.

    1998-01-01

    Acoustic studies in Lake Michigan found that bloaters (Coregonus hoyi) were less reflective per size than the other major pelagic species. This difference in in situ acoustic backscattering could indicate that the deep-water bloaters have compressed swimbladders for much of their vertical range with related implications on buoyancy. To test this hypothesis, the buoyancy characteristics of bloaters were determined with fish placed in a cage that was lowered to bottom and monitored with an underwater camera. We found bloaters were positively buoyant near surface, neutrally buoyant at intermediate strata, and negatively buoyant near bottom. This pattern was consistent for the range of depths bloaters occur. The depth of neutral buoyancy (near the 50-n strata) corresponds with the maximum extent of vertical migration for bloaters observed in acoustic surveys. Fish below this depth would be negatively buoyant which supports our contention that bloaters deeper in the water column have compressed swimbladders. Understanding the buoyancy characteristics of pelagic fishes will help to predict the effects of vertical migration on target strength measurement and confirms the use of acoustics as a tool to identify and quantify the ecological phenomenon of vertical migration.

  2. Behavioral and physiological correlates of temporal pitch perception in electric and acoustic hearing

    PubMed Central

    Carlyon, Robert P.; Mahendran, Suresh; Deeks, John M.; Long, Christopher J.; Axon, Patrick; Baguley, David; Bleeck, Stefan; Winter, Ian M.

    2008-01-01

    In the “4-6” condition of experiment 1, normal-hearing (NH) listeners compared the pitch of a bandpass-filtered pulse train, whose inter-pulse intervals (IPIs) alternated between 4 and 6 ms, to that of isochronous pulse trains. Consistent with previous results obtained at a lower signal level, the pitch of the 4-6 stimulus corresponded to that of an isochronous pulse train having a period of 5.7 ms – longer than the mean IPI of 5 ms. In other conditions the IPI alternated between 3.5-5.5 ms and 4.5-6.5 ms. Experiment 2 was similar but presented electric pulse trains to one channel of a CI. In both cases, as overall IPI increased, the pitch of the alternating-interval stimulus approached that of an isochronous train having a period equal to the mean IPI. Experiment 3 measured compound action potentials (CAPs) to alternating-interval stimuli in guinea pigs and in NH listeners. The CAPs to pulses occurring after 4-ms intervals were smaller than responses to pulses occurring after 6-ms intervals, resulting in a modulated pattern that was independent of overall level. The results are compared to the predictions of a simple model incorporating auditory-nerve (AN) refractoriness, and where pitch is estimated from 1st-order intervals in the AN response. PMID:18247900

  3. Monitoring, analyzing and simulating of spatial-temporal changes of landscape pattern over mining area

    NASA Astrophysics Data System (ADS)

    Liu, Pei; Han, Ruimei; Wang, Shuangting

    2014-11-01

    According to the merits of remotely sensed data in depicting regional land cover and Land changes, multi- objective information processing is employed to remote sensing images to analyze and simulate land cover in mining areas. In this paper, multi-temporal remotely sensed data were selected to monitor the pattern, distri- bution and trend of LUCC and predict its impacts on ecological environment and human settlement in mining area. The monitor, analysis and simulation of LUCC in this coal mining areas are divided into five steps. The are information integration of optical and SAR data, LULC types extraction with SVM classifier, LULC trends simulation with CA Markov model, landscape temporal changes monitoring and analysis with confusion matrixes and landscape indices. The results demonstrate that the improved data fusion algorithm could make full use of information extracted from optical and SAR data; SVM classifier has an efficient and stable ability to obtain land cover maps, which could provide a good basis for both land cover change analysis and trend simulation; CA Markov model is able to predict LULC trends with good performance, and it is an effective way to integrate remotely sensed data with spatial-temporal model for analysis of land use / cover change and corresponding environmental impacts in mining area. Confusion matrixes are combined with landscape indices to evaluation and analysis show that, there was a sustained downward trend in agricultural land and bare land, but a continues growth trend tendency in water body, forest and other lands, and building area showing a wave like change, first increased and then decreased; mining landscape has undergone a from small to large and large to small process of fragmentation, agricultural land is the strongest influenced landscape type in this area, and human activities are the primary cause, so the problem should be pay more attentions by government and other organizations.

  4. Wildlife in the Matrix: Spatio-Temporal Patterns of Herbivore Occurrence in Karnataka, India.

    PubMed

    Karanth, Krithi K

    2016-01-01

    Wildlife reserves are becoming increasingly isolated from the surrounding human-dominated landscapes particularly in Asia. It is imperative to understand how species are distributed spatially and temporally in and outside reserves, and what factors influence their occurrence. This study surveyed 7500 km(2) landscape surrounding five reserves in the Western Ghats to examine patterns of occurrence of five herbivores: elephant, gaur, sambar, chital, and pig. Species distributions are modeled spatio-temporally using an occupancy approach. Trained field teams conducted 3860 interview-based occupancy surveys in a 10-km buffer surrounding these five reserves in 2012. I found gaur and wild pig to be the least and most wide-ranging species, respectively. Elephant and chital exhibit seasonal differences in spatial distribution unlike the other three species. As predicted, distance to reserve, the reserve itself, and forest cover were associated with higher occupancy of all species, and higher densities of people negatively influenced occurrence of all species. Park management, species protection, and conflict mitigation efforts in this landscape need to incorporate temporal and spatial understanding of species distributions. All species are known crop raiders and conflict prone locations with resources (such as water and forage) have to be monitored and managed carefully. Wildlife reserves and adjacent areas are critical for long-term persistence and habitat use for all five herbivores and must be monitored to ensure wildlife can move freely. Such a large-scale approach to map and monitor species distributions can be adapted to other landscapes to identify and monitor critical habitats shared by people and wildlife. PMID:26319143

  5. Investigation of damage mechanisms of composite materials: Multivariable analysis based on temporal and wavelet features extracted from acoustic emission signals

    NASA Astrophysics Data System (ADS)

    Marec, A.; Thomas, J. H.; Guerjouma, R. El; Berbaoui, R.

    A procedure for the investigation of damage development and time-tofailure mechanisms within composite materials based on the analysis of the signals of acoustic emission (AE) is presented. An unsupervised automatic classification is proposed for the clustering of the monitored AE events in order to identify the different damage mechanisms and the most critical damage sources in composite materials. Thus, pattern recognition analyses (fuzzy C-means clustering) associated with a principal component analysis are used for the classification. A cluster analysis of AE data is achieved and the resulting clusters are correlated to the damage mechanisms of the material under investigation. After being validated on model samples composed of unidirectional fiber-matrix composites, this method is applied to actual composites such as polymer concretes. Furthermore, AE signals generated by heterogeneous materials are not stationary. Thus, timescale methods (continuous and discrete wavelet transforms) are used to determine new relevant descriptors to be introduced in the classification process in order to improve the characterization and the discrimination of the damage mechanisms. They provide a better discrimination of damage mechanisms of composite materials such as cross-ply composites than some time-based descriptors.

  6. SWI/SNF complex prevents lineage reversion and induces temporal patterning in neural stem cells.

    PubMed

    Eroglu, Elif; Burkard, Thomas R; Jiang, Yanrui; Saini, Nidhi; Homem, Catarina C F; Reichert, Heinrich; Knoblich, Juergen A

    2014-03-13

    Members of the SWI/SNF chromatin-remodeling complex are among the most frequently mutated genes in human cancer, but how they suppress tumorigenesis is currently unclear. Here, we use Drosophila neuroblasts to demonstrate that the SWI/SNF component Osa (ARID1) prevents tumorigenesis by ensuring correct lineage progression in stem cell lineages. We show that Osa induces a transcriptional program in the transit-amplifying population that initiates temporal patterning, limits self-renewal, and prevents dedifferentiation. We identify the Prdm protein Hamlet as a key component of this program. Hamlet is directly induced by Osa and regulates the progression of progenitors through distinct transcriptional states to limit the number of transit-amplifying divisions. Our data provide a mechanistic explanation for the widespread tumor suppressor activity of SWI/SNF. Because the Hamlet homologs Evi1 and Prdm16 are frequently mutated in cancer, this mechanism could well be conserved in human stem cell lineages. PAPERCLIP: PMID:24630726

  7. Soil moisture spatial and temporal patterns from a wireless sensor network test bed

    NASA Astrophysics Data System (ADS)

    Villalba, G.; Davis, T. W.; Liang, X.

    2014-12-01

    The dynamics of water movement through vegetated porous media is a complex problem with large variabilities over differing temporal and spatial scales. This study examines a multi-year wireless sensor network (WSN) collecting shallow subsurface (10 and 30 cm) soil moisture content and soil water potential. The study site, located at the Audubon Society of Western Pennsylvania's Beechwood Farms Nature Reserve, is one of the longest running WSNs of its kind. Despite the noisy nature of the collected data (e.g., in comparison to traditional data logger methods), the WSN, consisting of over 50 nodes with more than 100 sensors, provides critical information regarding catchment-scale spatiotemporal patterns of soil moisture and soil water potential within a forested hill-sloped region of southwestern Pennsylvania.

  8. Temporal patterns of emergency calls of a metropolitan city in China

    NASA Astrophysics Data System (ADS)

    Wang, Wenjun; Yuan, Ning; Pan, Lin; Jiao, Pengfei; Dai, Weidi; Xue, Guixiang; Liu, Dong

    2015-10-01

    Quantitative understanding of human communication behavior, one of the fundamental human activities, is of great value in many practical problems, ranging from urban planning to emergency management. Most of the recent studies have focused on human communication under normal situations. Here, we study the temporal patterns of emergency calls, which is a special kind of human communication activity under emergency circumstances, by analyzing a dataset of emergency call records that collected from a metropolitan city in China during a five year period. We find that most individuals rarely make emergency calls. The distribution of inter-call durations decays as double power law along with an exponential tail. We also discover that, comparing with the normal communication activities, the activity of calling the emergency number shows more significant characteristics of burstiness and memory. We further demonstrate that the behavior of calling the emergency number when people encounter extreme events could be explained by an event-driven memory process.

  9. Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation

    NASA Astrophysics Data System (ADS)

    Busemeyer, Lucas; Ruckelshausen, Arno; Möller, Kim; Melchinger, Albrecht E.; Alheit, Katharina V.; Maurer, Hans Peter; Hahn, Volker; Weissmann, Elmar A.; Reif, Jochen C.; Würschum, Tobias

    2013-08-01

    To extend agricultural productivity by knowledge-based breeding and tailor varieties adapted to specific environmental conditions, it is imperative to improve our ability to assess the dynamic changes of the phenome of crops under field conditions. To this end, we have developed a precision phenotyping platform that combines various sensors for a non-invasive, high-throughput and high-dimensional phenotyping of small grain cereals. This platform yielded high prediction accuracies and heritabilities for biomass of triticale. Genetic variation for biomass accumulation was dissected with 647 doubled haploid lines derived from four families. Employing a genome-wide association mapping approach, two major quantitative trait loci (QTL) for biomass were identified and the genetic architecture of biomass accumulation was found to be characterized by dynamic temporal patterns. Our findings highlight the potential of precision phenotyping to assess the dynamic genetics of complex traits, especially those not amenable to traditional phenotyping.

  10. Differentiation of bacterial colonies and temporal growth patterns using hyperspectral imaging

    NASA Astrophysics Data System (ADS)

    Mehrübeoglu, Mehrube; Buck, Gregory W.; Livingston, Daniel W.

    2014-09-01

    Detection and identification of bacteria are important for health and safety. Hyperspectral imaging offers the potential to capture unique spectral patterns and spatial information from bacteria which can then be used to detect and differentiate bacterial species. Here, hyperspectral imaging has been used to characterize different bacterial colonies and investigate their growth over time. Six bacterial species (Pseudomonas fluorescens, Escherichia coli, Serratia marcescens, Salmonella enterica, Staphylococcus aureus, Enterobacter aerogenes) were grown on tryptic soy agar plates. Hyperspectral data were acquired immediately after, 24 hours after, and 96 hours after incubation. Spectral signatures from bacterial colonies demonstrated repeatable measurements for five out of six species. Spatial variations as well as changes in spectral signatures were observed across temporal measurements within and among species at multiple wavelengths due to strengthening or weakening reflectance signals from growing bacterial colonies based on their pigmentation. Between-class differences and within-class similarities were the most prominent in hyperspectral data collected 96 hours after incubation.

  11. Extraordinary acoustic transmission based on source pattern enhancement and reconstruction by metal cylinder structure

    NASA Astrophysics Data System (ADS)

    Xia, Jian-ping; Sun, Hong-xiang; Yuan, Shou-qi; Zhang, Shu-yi

    2015-10-01

    We report extraordinary acoustic transmission through a simple metal cylinder structure immersed in water. This exotic phenomenon stems from the enhancement and reconstruction of the incident source induced by the cylinder, which is essentially distinct from the mechanisms described in previous studies. The extraordinary acoustic transmission is closely related to the inner radius and acoustic impedance of the cylinder. More importantly, the waveforms of the transmitted waves remain unchanged, and the propagation directions of the transmitted waves can be manipulated by adjusting the position of the incident source. Our finding should have an impact on ultrasonic applications.

  12. Defining high-flow seasons using temporal streamflow patterns from a global model

    NASA Astrophysics Data System (ADS)

    Lee, D.; Ward, P.; Block, P.

    2015-11-01

    Globally, flood catastrophes lead all natural hazards in terms of impacts on society, causing billions of dollars of damages annually. Here, a novel approach to defining high-flow seasons (3-month) globally is presented by identifying temporal patterns of streamflow. The main high-flow season is identified using a volume-based threshold technique and the PCR-GLOBWB model. In comparison with observations, 40 % (50 %) of locations at a station (sub-basin) scale have identical peak months and 81 % (89 %) are within 1 month, indicating fair agreement between modeled and observed high-flow seasons. Minor high-flow seasons are also defined for bi-modal flow regimes. Identified major and minor high-flow seasons together are found to well represent actual flood records from the Dartmouth Flood Observatory, further substantiating the model's ability to reproduce the appropriate high-flow season. These high-spatial-resolution high-flow seasons and associated performance metrics allow for an improved understanding of temporal characterization of streamflow and flood potential, causation, and management. This is especially attractive for regions with limited observations and/or little capacity to develop early warning flood systems.

  13. A method for analyzing temporal patterns of variability of a time series from Poincare plots.

    PubMed

    Fishman, Mikkel; Jacono, Frank J; Park, Soojin; Jamasebi, Reza; Thungtong, Anurak; Loparo, Kenneth A; Dick, Thomas E

    2012-07-01

    The Poincaré plot is a popular two-dimensional, time series analysis tool because of its intuitive display of dynamic system behavior. Poincaré plots have been used to visualize heart rate and respiratory pattern variabilities. However, conventional quantitative analysis relies primarily on statistical measurements of the cumulative distribution of points, making it difficult to interpret irregular or complex plots. Moreover, the plots are constructed to reflect highly correlated regions of the time series, reducing the amount of nonlinear information that is presented and thereby hiding potentially relevant features. We propose temporal Poincaré variability (TPV), a novel analysis methodology that uses standard techniques to quantify the temporal distribution of points and to detect nonlinear sources responsible for physiological variability. In addition, the analysis is applied across multiple time delays, yielding a richer insight into system dynamics than the traditional circle return plot. The method is applied to data sets of R-R intervals and to synthetic point process data extracted from the Lorenz time series. The results demonstrate that TPV complements the traditional analysis and can be applied more generally, including Poincaré plots with multiple clusters, and more consistently than the conventional measures and can address questions regarding potential structure underlying the variability of a data set. PMID:22556398

  14. Remote sensing captures varying temporal patterns of vegetation between human-altered and natural landscapes

    PubMed Central

    Roderick, George K.

    2015-01-01

    Global change has led to shifts in phenology, potentially disrupting species interactions such as plant–pollinator relationships. Advances in remote sensing techniques allow one to detect vegetation phenological diversity between different land use types, but it is not clear how this translates to other communities in the ecosystem. Here, we investigated the phenological diversity of the vegetation across a human-altered landscape including urban, agricultural, and natural land use types. We found that the patterns of change in the vegetation indices (EVI and NDVI) of human-altered landscapes are out of synchronization with the phenology in neighboring natural California grassland habitat. Comparing these findings to a spatio-temporal pollinator distribution dataset, EVI and NDVI were significant predictors of total bee abundance, a relationship that improved with time lags. This evidence supports the importance of differences in temporal dynamics between land use types. These findings also highlight the potential to utilize remote sensing data to make predictions for components of biodiversity that have tight vegetation associations, such as pollinators. PMID:26290795

  15. Effects of subsampling of passive acoustic recordings on acoustic metrics.

    PubMed

    Thomisch, Karolin; Boebel, Olaf; Zitterbart, Daniel P; Samaran, Flore; Van Parijs, Sofie; Van Opzeeland, Ilse

    2015-07-01

    Passive acoustic monitoring is an important tool in marine mammal studies. However, logistics and finances frequently constrain the number and servicing schedules of acoustic recorders, requiring a trade-off between deployment periods and sampling continuity, i.e., the implementation of a subsampling scheme. Optimizing such schemes to each project's specific research questions is desirable. This study investigates the impact of subsampling on the accuracy of two common metrics, acoustic presence and call rate, for different vocalization patterns (regimes) of baleen whales: (1) variable vocal activity, (2) vocalizations organized in song bouts, and (3) vocal activity with diel patterns. To this end, above metrics are compared for continuous and subsampled data subject to different sampling strategies, covering duty cycles between 50% and 2%. The results show that a reduction of the duty cycle impacts negatively on the accuracy of both acoustic presence and call rate estimates. For a given duty cycle, frequent short listening periods improve accuracy of daily acoustic presence estimates over few long listening periods. Overall, subsampling effects are most pronounced for low and/or temporally clustered vocal activity. These findings illustrate the importance of informed decisions when applying subsampling strategies to passive acoustic recordings or analyses for a given target species. PMID:26233026

  16. Electrophysiological evidence for a defect in the processing of temporal sound patterns in multiple sclerosis

    PubMed Central

    Jones, S; Sprague, L; Vaz, P

    2002-01-01

    Objectives: To assess the processing of spectrotemporal sound patterns in multiple sclerosis by using auditory evoked potentials (AEPs) to complex harmonic tones. Methods: 22 patients with definite multiple sclerosis but mild disability and no auditory complaints were compared with 15 normal controls. Short latency AEPs were recorded using standard methods. Long latency AEPs were recorded to synthesised musical instrument tones, at onset every two seconds, at abrupt frequency changes every two seconds, and at the end of a two second period of 16/s frequency changes. The subjects were inattentive but awake, reading irrelevant material. Results: Short latency AEPs were abnormal in only 4 of 22 patients, whereas long latency AEPs were abnormal to one or more stimuli in 17 of 22. No significant latency prolongation was seen in response to onset and infrequent frequency changes (P1, N1, P2) but the potentials at the end of 16/s frequency modulations, particularly the P2 peaking approximately 200 ms after the next expected change, were significantly delayed. Conclusion: The delayed responses appear to be a mild disorder in the processing of change in temporal sound patterns. The delay may be conceived of as extra time taken to compare the incoming sound with the contents of a temporally ordered sensory memory store (the long auditory store or echoic memory), which generates a response when the next expected frequency change fails to occur. The defect cannot be ascribed to lesions of the afferent pathways and so may be due to disseminated brain lesions visible or invisible on magnetic resonance imaging. PMID:12397152

  17. Spatial and temporal statistical analysis of bycatch data: Patterns of sea turtle bycatch in the North Atlantic

    USGS Publications Warehouse

    Gardner, B.; Sullivan, P.J.; Morreale, S.J.; Epperly, S.P.

    2008-01-01

    Loggerhead (Caretta caretta) and leatherback (Dermochelys coriacea) sea turtle distributions and movements in offshore waters of the western North Atlantic are not well understood despite continued efforts to monitor, survey, and observe them. Loggerhead and leatherback sea turtles are listed as endangered by the World Conservation Union, and thus anthropogenic mortality of these species, including fishing, is of elevated interest. This study quantifies spatial and temporal patterns of sea turtle bycatch distributions to identify potential processes influencing their locations. A Ripley's K function analysis was employed on the NOAA Fisheries Atlantic Pelagic Longline Observer Program data to determine spatial, temporal, and spatio-temporal patterns of sea turtle bycatch distributions within the pattern of the pelagic fishery distribution. Results indicate that loggerhead and leatherback sea turtle catch distributions change seasonally, with patterns of spatial clustering appearing from July through October. The results from the space-time analysis indicate that sea turtle catch distributions are related on a relatively fine scale (30-200 km and 1-5 days). The use of spatial and temporal point pattern analysis, particularly K function analysis, is a novel way to examine bycatch data and can be used to inform fishing practices such that fishing could still occur while minimizing sea turtle bycatch. ?? 2008 NRC.

  18. Using dynamic Brownian bridge movement modelling to measure temporal patterns of habitat selection.

    PubMed

    Byrne, Michael E; Clint McCoy, J; Hinton, Joseph W; Chamberlain, Michael J; Collier, Bret A

    2014-09-01

    Accurately describing animal space use is vital to understanding how wildlife use habitat. Improvements in GPS technology continue to facilitate collection of telemetry data at high spatial and temporal resolutions. Application of the recently introduced dynamic Brownian bridge movement model (dBBMM) to such data is promising as the method explicitly incorporates the behavioural heterogeneity of a movement path into the estimated utilization distribution (UD). Utilization distributions defining space use are normally estimated for time-scales ranging from weeks to months, obscuring much of the fine-scale information available from high-volume GPS data sets. By accounting for movement heterogeneity, the dBBMM provides a rigorous, behaviourally based estimate of space use between each set of relocations. Focusing on UDs generated between individual sets of locations allows us to quantify fine-scale circadian variation in habitat use. We used the dBBMM to estimate UDs bounding individual time steps for three terrestrial species with different life histories to illustrate how the method can be used to identify fine-scale variations in habitat use. We also demonstrate how dBBMMs can be used to characterize circadian patterns of habitat selection and link fine-scale patterns of habitat use to behaviour. We observed circadian patterns of habitat use that varied seasonally for a white-tailed deer (Odocoileus virginianus) and coyote (Canis latrans). We found seasonal patterns in selection by the white-tailed deer and were able to link use of conifer forests and agricultural fields to behavioural state of the coyote. Additionally, we were able to quantify the date in which a Rio Grande wild turkey (Meleagris gallopavo intermedia) initiated laying as well as when during the day, she was most likely to visit the nest site to deposit eggs. The ability to quantify circadian patterns of habitat use may have important implications for research and management of wildlife. Additionally, the ability to link such patterns to behaviour may aid in the development of mechanistic models of habitat selection. PMID:24460723

  19. Temporal, spatial, and between-host comparisons of patterns of parasitism in lake zooplankton.

    PubMed

    Duffy, Meghan A; Cáceres, Carla E; Hall, Spencer R; Tessier, Alan J; Ives, Anthony R

    2010-11-01

    In nature, multiple parasite species infect multiple host species and are influenced by processes operating across different spatial and temporal scales. Data sets incorporating these complexities offer exciting opportunities to examine factors that shape epidemics. We present a method using generalized linear mixed models in a multilevel modeling framework to analyze patterns of variances and correlations in binomially distributed prevalence data. We then apply it to a multi-lake, multiyear data set involving two Daphnia host species and nine microparasite species. We found that the largest source of variation in parasite prevalence was the species identities of host-parasite pairs, indicating strong host-parasite specificity. Within host-parasite combinations, spatial variation (among lakes) exceeded interannual variation. This suggests that factors promoting differences among lakes (e.g., habitat characteristics and species interactions) better explain variation in peak infection prevalence in our data set than factors driving differences among years (e.g., climate). Prevalences of parasites in D. dentifera were more positively correlated than those for D. pulicaria, suggesting that similar factors influenced epidemic size among parasites in D. dentifera. Overall, this study demonstrates a method for parsing patterns of variation and covariation in infection prevalence data, providing greater insight into the relative importance of different underlying drivers of parasitism. PMID:21141193

  20. Spatial and temporal patterns of micropollutants upstream and downstream of 24 WWTPs across Switzerland

    NASA Astrophysics Data System (ADS)

    Spycher, Barbara; Deuber, Fabian; Kistler, David; Burdon, Frank; Reyes, Marta; Alder, Alfredo C.; Joss, Adriano; Eggen, Rik; Singer, Heinz; Stamm, Christian

    2015-04-01

    Treated wastewater is an important source of micropollutants in many streams. These chemicals consist of very diverse set of compounds that may vary in space and time. In order to improve our understanding of such spatio-temporal patterns of micropollutants in surface waters, we compared upstream and downstream locations at 24 sites across the Swiss Plateau and Jura (12 sites in the 2013 campaign, 12 sites during the 2014 campaign). Each site represents the most upstream treatment plant in the corresponding catchment. This survey is part of the interdisciplinary, Eawag-wide research project EcoImpact that aims at elucidating the ecological effects of micropollutants on stream ecosystems. In 2013, a broad analytical screening was applied to samples collected during winter (January) and summer conditions (June). Based in these results, the bi-monthly samples obtained in 2014 were analysed for a set of about 60 selected organic micropollutants and 10 heavy metals. The screening results demonstrate that generally pharmaceuticals, artificial sweeteners and corrosion inhibitors make up the largest part of the organic micropollutants. Pesticides including biocides and plant protection products are also regularly found but at lower concentrations. This presentation will analyse the variability of the micropollutant patterns across the different sites and how upstream conditions and the wastewater composition changes with season.

  1. Does Sex Matter? Temporal and Spatial Patterns of Cougar-Human Conflict in British Columbia

    PubMed Central

    Teichman, Kristine J.; Cristescu, Bogdan; Nielsen, Scott E.

    2013-01-01

    Wildlife-human conflicts occur wherever large carnivores overlap human inhabited areas. Conflict mitigation can be facilitated by understanding long-term dynamics and examining sex-structured conflict patterns. Predicting areas with high probability of conflict helps focus management strategies in order to proactively decrease carnivore mortality. We investigated the importance of cougar (Puma concolor) habitat, human landscape characteristics and the combination of habitat and human features on the temporal and spatial patterns of cougar-human conflicts in British Columbia. Conflicts (n?=?1,727; 1978–2007) involved similar numbers of male and female cougars with conflict rate decreasing over the past decade. Conflicts were concentrated within the southern part of the province with the most conflicts per unit area occurring on Vancouver Island. For both sexes, the most supported spatial models for the most recent (1998–2007) conflicts contained both human and habitat variables. Conflicts were more likely to occur close to roads, at intermediate elevations and far from the northern edge of the cougar distribution range in British Columbia. Male cougar conflicts were more likely to occur in areas of intermediate human density. Unlike cougar conflicts in other regions, cattle density was not a significant predictor of conflict location. With human populations expanding, conflicts are expected to increase. Conservation tools, such as the maps predicting conflict hotspots from this study, can help focus management efforts to decrease carnivore-human conflict. PMID:24040312

  2. Contributions of human hippocampal subfields to spatial and temporal pattern separation

    PubMed Central

    Azab, Marwa; Stark, Shauna M.; Stark, Craig E.L.

    2014-01-01

    We sought to explore the roles of the hippocampal subregions and adjacent medial temporal lobe regions in pattern separation and any differential contributions based on sequential or spatial information. Young adults performed an incidental encoding task on a sequence of four objects presented on the screen in one of 8 locations while we collected high-resolution functional MRI brain scans. We employed 5 trials of interest: first presentations, exact repetitions, lures in which the same objects were repeated in different locations (spatial lures), lures in which the same objects were presented in a different sequential order (sequential lures), and lures in which both the spatial location and sequence were changed (both lures). We found no evidence for spatial or sequential specialization in the hippocampal subfields, consistent with the hypothesis that the dentate gyrus acts as a universal pattern separator. Likewise, we did not observe specialization for the perirhinal or parahippocampal cortices for spatial or sequential information, though both regions show evidence for associative processing in this task. PMID:24167043

  3. Understanding flood-induced water chemistry variability extracting temporal patterns with the LDA method

    NASA Astrophysics Data System (ADS)

    Aubert, A. H.; Tavenard, R.; Emonet, R.; De Lavenne, A.; Malinowski, S.; Guyet, T.; Quiniou, R.; Odobez, J.; Merot, P.; Gascuel-odoux, C.

    2013-12-01

    Studying floods has been a major issue in hydrological research for years, both in quantitative and qualitative hydrology. Stream chemistry is a mix of solutes, often used as tracers, as they originate from various sources in the catchment and reach the stream by various flow pathways. Previous studies (for instance (1)) hypothesized that stream chemistry reaction to a rainfall event is not unique but varies seasonally, and according to the yearly meteorological conditions. Identifying a typology of flood temporal chemical patterns is a way to better understand catchment processes at the flood and seasonal time scale. We applied a probabilistic model (Latent Dirichlet Allocation or LDA (2)) mining recurrent sequential patterns from a dataset of floods. A set of 472 floods was automatically extracted from a daily 12-year long record of nitrate, dissolved organic carbon, sulfate and chloride concentrations. Rainfall, discharge, water table depth and temperature are also considered. Data comes from a long-term hydrological observatory (AgrHys, western France) located at Kervidy-Naizin. From each flood, a document has been generated that is made of a set of "hydrological words". Each hydrological word corresponds to a measurement: it is a triplet made of the considered variable, the time at which the measurement is made (relative to the beginning of the flood), and its magnitude (that can be low, medium or high). The documents and the number of pattern to be mined are used as input data to the LDA algorithm. LDA relies on spotting co-occurrences (as an alternative to the more traditional study of correlation) between words that appear within the flood documents. It has two nice properties that are its ability to easily deal with missing data and its additive property that allows a document to be seen as a mixture of several flood patterns. The output of LDA is a set of patterns easily represented in graphics. These patterns correspond to typical reactions to rainfall events. The patterns themselves are carefully studied, as well as their repartition along the year and along the 12 years of the dataset. We would recommend the use of such model to any study based on patterns or signature extraction. It could be well suited to compare different geographical locations and analyzing the resulting different pattern distributions. (1) Aubert, A.H., Gascuel-Odoux, C., Gruau, G., Akkal, N., Faucheux, M., Fauvel, Y., Grimaldi, C., Hamon, Y., Jaffrezic, A., Lecoz Boutnik, M., Molenat, J., Petitjean, P., Ruiz, L., Merot, Ph. (2013), Solute transport dynamics in small, shallow groundwater-dominated agricultural catchments: insights from a high-frequency, multisolute 10 yr-long monitoring study. Hydrol. Earth Syst. Sci., 17(4): 1379-1391. (2) Aubert, A.H., Tavenard, R, Emonet, R., de Lavenne, A., Malinowski, S., Guyet, T., Quiniou, R., Odobez, J.-M., Merot, Ph., Gascuel-Odoux, C., submitted to WRR. Clustering with a probabilistic method newly applied in hydrology: application on flood events from water quality time-series.

  4. Temporal pattern and effect of sex on lipopolysaccharide-induced stress hormone and cytokine response in pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The temporal pattern and gender effect of immune and stress hormone responses to a lipopolysaccharide (LPS) challenge were assessed using a pig model. Secretion of the pro-inflammatory cytokines tumor necrosis factor (TNF)-alpha, interleukin (IL)-1beta and IL-6 increased in a time-dependent manner f...

  5. Different Phases of Long-Term Memory Require Distinct Temporal Patterns of PKA Activity after Single-Trial Classical Conditioning

    ERIC Educational Resources Information Center

    Michel, Maximilian; Kemenes, Ildiko; Muller, Uli; Kemenes, Gyorgy

    2008-01-01

    The cAMP-dependent protein kinase (PKA) is known to play a critical role in both transcription-independent short-term or intermediate-term memory and transcription-dependent long-term memory (LTM). Although distinct phases of LTM already have been demonstrated in some systems, it is not known whether these phases require distinct temporal patterns

  6. DATA-DRIVEN DISCOVERY OF TEMPORAL AND GEOSPATIAL PATTERNS OF DISEASE TRANSMISSION: WEST NILE VIRUS IN MARYLAND

    EPA Science Inventory

    The necessity of rapid response to a developing disease outbreak often precludes systematic investigation of the mechanisms and patterns (temporal and geospatial) of spread. In order to deploy the most rapid response possible, we must exploit existing data to its maximum extent....

  7. Water quality in the Fort Cobb Watershed, USA: Spatial and temporal patterns of dissolved P stream concentrations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dissolved phosphorus (P) has often been identified as the nutrient of concern in lakes, reservoirs and streams especially where there is evidence of eutrophication. The objective of this work is to identify spatial and temporal patterns in dissolved P [soluble reactive P (SRP) and bioavailable P (B...

  8. Spatio-Temporal Asynchronous Co-Occurrence Pattern for Big Climate Data towards Long-Lead Flood Prediction

    E-print Network

    Ding, Wei

    Spatio-Temporal Asynchronous Co-Occurrence Pattern for Big Climate Data towards Long-Lead Flood floods 5 to 15 days in advance. Current simulation models forecasting heavy precipitation, a major factor related with flood occurrences, are computationally ex- pensive and limited by their error amplification

  9. Temporal pattern and effect of sex on lipopolysaccharide-induced stress hormone and cytokine response in pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The temporal pattern and gender effect on immune and stress hormone responses to a lipopolysaccharide (LPS) challenge was assessed using a pig model. Secretion of the proinflammatory cytokines tumor necrosis factor (TNF)-alpha, interleukin-1 (IL-1) beta and IL-6 increased (P < 0.05) in a time-depend...

  10. Acoustic telemetry reveals large-scale migration patterns of walleye in Lake Huron.

    PubMed

    Hayden, Todd A; Holbrook, Christopher M; Fielder, David G; Vandergoot, Christopher S; Bergstedt, Roger A; Dettmers, John M; Krueger, Charles C; Cooke, Steven J

    2014-01-01

    Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n = 199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n = 140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron. PMID:25506913

  11. Acoustic Telemetry Reveals Large-Scale Migration Patterns of Walleye in Lake Huron

    PubMed Central

    Hayden, Todd A.; Holbrook, Christopher M.; Fielder, David G.; Vandergoot, Christopher S.; Bergstedt, Roger A.; Dettmers, John M.; Krueger, Charles C.; Cooke, Steven J.

    2014-01-01

    Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n?=?199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n?=?140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron. PMID:25506913

  12. Acoustic telemetry reveals large-scale migration patterns of walleye in Lake Huron

    USGS Publications Warehouse

    Hayden, Todd A.; Holbrook, Christopher; Fielder, David G.; Vandergoot, Christopher S.; Bergstedt, Roger A.; Dettmers, John M.; Krueger, Charles C.; Cooke, Steven J.

    2014-01-01

    Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n?=?199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n?=?140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron.

  13. Patterns of Occurrence and Marine Mammal Acoustic Behavior in Relation to Navy Sonar Activity Off Jacksonville, Florida.

    PubMed

    Oswald, Julie N; Norris, Thomas F; Yack, Tina M; Ferguson, Elizabeth L; Kumar, Anurag; Nissen, Jene; Bell, Joel

    2016-01-01

    Passive acoustic data collected from marine autonomous recording units deployed off Jacksonville, FL (from 13 September to 8 October 2009 and 3 December 2009 to 8 January 2010), were analyzed for detection of cetaceans and Navy sonar. Cetaceans detected included Balaenoptera acutorostrata, Eubalaena glacialis, B. borealis, Physeter macrocephalus, blackfish, and delphinids. E. glacialis were detected at shallow and, somewhat unexpectedly, deep sites. P. macrocephalus were characterized by a strong diel pattern. B. acutorostrata showed the strongest relationship between sonar activity and vocal behavior. These results provide a preliminary assessment of cetacean occurrence off Jacksonville and new insights on vocal responses to sonar. PMID:26611034

  14. Mining Spatial-Temporal Patterns and Structural Sparsity for Human Motion Data Denoising.

    PubMed

    Feng, Yinfu; Ji, Mingming; Xiao, Jun; Yang, Xiaosong; Zhang, Jian J; Zhuang, Yueting; Li, Xuelong

    2015-12-01

    Motion capture is an important technique with a wide range of applications in areas such as computer vision, computer animation, film production, and medical rehabilitation. Even with the professional motion capture systems, the acquired raw data mostly contain inevitable noises and outliers. To denoise the data, numerous methods have been developed, while this problem still remains a challenge due to the high complexity of human motion and the diversity of real-life situations. In this paper, we propose a data-driven-based robust human motion denoising approach by mining the spatial-temporal patterns and the structural sparsity embedded in motion data. We first replace the regularly used entire pose model with a much fine-grained partlet model as feature representation to exploit the abundant local body part posture and movement similarities. Then, a robust dictionary learning algorithm is proposed to learn multiple compact and representative motion dictionaries from the training data in parallel. Finally, we reformulate the human motion denoising problem as a robust structured sparse coding problem in which both the noise distribution information and the temporal smoothness property of human motion have been jointly taken into account. Compared with several state-of-the-art motion denoising methods on both the synthetic and real noisy motion data, our method consistently yields better performance than its counterparts. The outputs of our approach are much more stable than that of the others. In addition, it is much easier to setup the training dataset of our method than that of the other data-driven-based methods. PMID:25561602

  15. Temporal and spatial patterns of Bartonella infection in black-tailed prairie dogs (Cynomys ludovicianus).

    PubMed

    Bai, Ying; Kosoy, M Y; Ray, C; Brinkerhoff, R J; Collinge, S K

    2008-08-01

    We describe the temporal dynamics and spatial distribution of Bartonella in black-tailed prairie dogs (Cynomys ludovicianus) based on a longitudinal study conducted in 20 black-tailed prairie dog (BTPD) colonies in Boulder County, CO from 2003 to 2005. Bartonella infection was widely distributed in all colonies with an overall prevalence of 23.1%, but varied by colony from 4.8% to 42.5% and by year from 9.1 to 39.0%, with a marked increase in Bartonella activity in 2005. Levels of bacteremia varied from 40 to 12,000 colony forming units (CFU) per milliliter of BTPD blood, but were highly skewed with a median of 240 CFU. Bartonella infection rates were unimodal with respect to BTPD body mass, first increasing among growing juveniles, then declining among adults. Infection rates exhibited a sigmoidal response to body mass, such that 700g may prove to be a useful threshold value to evaluate the likelihood of Bartonella infection in BTPDs. Bartonella prevalence increased throughout the testing season for each year, as newly emerged juveniles developed bacteremia. Data from recaptured animals suggest that Bartonella infections did not persist in individual BTPDs, which may explain the relatively low prevalence of Bartonella in BTPDs compared to other rodent species. No association was found between Bartonella prevalence and host population density. Prevalence did not differ between males and females. The spatio-temporal pattern of Bartonella infection among colonies suggests epizootic spread from northern to central and southern portions of the study area. The potential significance of the BTPD-associated Bartonella for public health needs to be further investigated. PMID:18176820

  16. Interpreting the spatio-temporal patterns of sea turtle strandings: Going with the flow

    USGS Publications Warehouse

    Hart, K.M.; Mooreside, P.; Crowder, L.B.

    2006-01-01

    Knowledge of the spatial and temporal distribution of specific mortality sources is crucial for management of species that are vulnerable to human interactions. Beachcast carcasses represent an unknown fraction of at-sea mortalities. While a variety of physical (e.g., water temperature) and biological (e.g., decomposition) factors as well as the distribution of animals and their mortality sources likely affect the probability of carcass stranding, physical oceanography plays a major role in where and when carcasses strand. Here, we evaluate the influence of nearshore physical oceanographic and wind regimes on sea turtle strandings to decipher seasonal trends and make qualitative predictions about stranding patterns along oceanfront beaches. We use results from oceanic drift-bottle experiments to check our predictions and provide an upper limit on stranding proportions. We compare predicted current regimes from a 3D physical oceanographic model to spatial and temporal locations of both sea turtle carcass strandings and drift bottle landfalls. Drift bottle return rates suggest an upper limit for the proportion of sea turtle carcasses that strand (about 20%). In the South Atlantic Bight, seasonal development of along-shelf flow coincides with increased numbers of strandings of both turtles and drift bottles in late spring and early summer. The model also predicts net offshore flow of surface waters during winter - the season with the fewest relative strandings. The drift bottle data provide a reasonable upper bound on how likely carcasses are to reach land from points offshore and bound the general timeframe for stranding post-mortem (< two weeks). Our findings suggest that marine turtle strandings follow a seasonal regime predictable from physical oceanography and mimicked by drift bottle experiments. Managers can use these findings to reevaluate incidental strandings limits and fishery takes for both nearshore and offshore mortality sources. ?? 2005 Elsevier Ltd. All rights reserved.

  17. Novel approaches in Extended Principal Components Analysis to compare spatio-temporal patterns among multiple image time series

    NASA Astrophysics Data System (ADS)

    Neeti, N.; Eastman, R.

    2012-12-01

    Extended Principal Components Analysis (EPCA) aims to examine the patterns of variability shared among multiple image time series. Conventionally, this is done by virtually extending the spatial dimension of the time series by spatially concatenating the different time series and then performing S-mode PCA. In S-mode analysis, samples in space are the statistical variables and samples in time are the statistical observations. This paper introduces the concept of temporal concatenation of multiple image time series to perform EPCA. EPCA can also be done with T-mode orientation in which samples in time are the statistical variables and samples in space are the statistical observations. This leads to a total of four orientations in which EPCA can be carried out. This research explores these four orientations and their implications in investigating spatio-temporal relationships among multiple time series. This research demonstrates that EPCA carried out with temporal concatenation of the multiple time series with T-mode (tT) is able to identify similar spatial patterns among multiple time series. The conventional S-mode EPCA with spatial concatenation (sS) identifies similar temporal patterns among multiple time series. The other two modes, namely T-mode with spatial concatenation (sT) and S-mode with temporal concatenation (tS), are able to identify patterns which share consistent temporal phase relationships and consistent spatial phase relationships with each other, respectively. In a case study using three sets of precipitation time series data from GPCP, CMAP and NCEP-DOE, the results show that examination of all four modes provides an effective basis comparison of the series.

  18. Multivariate data-driven modelling and pattern recognition for damage detection and identification for acoustic emission and acousto-ultrasonics

    NASA Astrophysics Data System (ADS)

    Torres-Arredondo, M.-A.; Tibaduiza, D.-A.; McGugan, M.; Toftegaard, H.; Borum, K.-K.; Mujica, L. E.; Rodellar, J.; Fritzen, C.-P.

    2013-10-01

    Different methods are commonly used for non-destructive testing in structures; among others, acoustic emission and ultrasonic inspections are widely used to assess structures. The research presented in this paper is motivated by the need to improve the inspection capabilities and reliability of structural health monitoring (SHM) systems based on ultrasonic guided waves with focus on the acoustic emission and acousto-ultrasonics techniques. The use of a guided wave based approach is driven by the fact that these waves are able to propagate over relatively long distances, and interact sensitively and uniquely with different types of defect. Special attention is paid here to the development of efficient SHM methodologies. This requires robust signal processing techniques for the correct interpretation of the complex ultrasonic waves. Therefore, a variety of existing algorithms for signal processing and pattern recognition are evaluated and integrated into the different proposed methodologies. As a contribution to solve the problem, this paper presents results in damage detection and classification using a methodology based on hierarchical nonlinear principal component analysis, square prediction measurements and self-organizing maps, which are applied to data from acoustic emission tests and acousto-ultrasonic inspections. At the end, the efficiency of these methodologies is experimentally evaluated in diverse anisotropic composite structures.

  19. Spatio-Temporal Migration Patterns of Pacific Salmon Smolts in Rivers and Coastal Marine Waters

    PubMed Central

    Melnychuk, Michael C.; Welch, David W.; Walters, Carl J.

    2010-01-01

    Background Migrations allow animals to find food resources, rearing habitats, or mates, but often impose considerable predation risk. Several behavioural strategies may reduce this risk, including faster travel speed and taking routes with shorter total distance. Descriptions of the natural range of variation in migration strategies among individuals and populations is necessary before the ecological consequences of such variation can be established. Methodology/Principal Findings Movements of tagged juvenile coho, steelhead, sockeye, and Chinook salmon were quantified using a large-scale acoustic tracking array in southern British Columbia, Canada. Smolts from 13 watersheds (49 watershed/species/year combinations) were tagged between 2004–2008 and combined into a mixed-effects model analysis of travel speed. During the downstream migration, steelhead were slower on average than other species, possibly related to freshwater residualization. During the migration through the Strait of Georgia, coho were slower than steelhead and sockeye, likely related to some degree of inshore summer residency. Hatchery-reared smolts were slower than wild smolts during the downstream migration, but after ocean entry, average speeds were similar. In small rivers, downstream travel speed increased with body length, but in the larger Fraser River and during the coastal migration, average speed was independent of body length. Smolts leaving rivers located towards the northern end of the Strait of Georgia ecosystem migrated strictly northwards after ocean entry, but those from rivers towards the southern end displayed split-route migration patterns within populations, with some moving southward. Conclusions/Significance Our results reveal a tremendous diversity of behavioural migration strategies used by juvenile salmon, across species, rearing histories, and habitats, as well as within individual populations. During the downstream migration, factors that had strong effects on travel speeds included species, wild or hatchery-rearing history, watershed size and, in smaller rivers, body length. During the coastal migration, travel speeds were only strongly affected by species differences. PMID:20886121

  20. Temporal-Spatial Pattern of Carbon Stocks in Forest Ecosystems in Shaanxi, Northwest China.

    PubMed

    Cui, Gaoyang; Chen, Yunming; Cao, Yang

    2015-01-01

    The precise and accurate quantitative evaluation of the temporal and spatial pattern of carbon (C) storage in forest ecosystems is critical for understanding the role of forests in the global terrestrial C cycle and is essential for formulating forest management policies to combat climate change. In this study, we examined the C dynamics of forest ecosystems in Shaanxi, northwest China, based on four forest inventories (1989-1993, 1994-1998, 1999-2003, and 2004-2008) and field-sampling measurements (2012). The results indicate that the total C storage of forest ecosystems in Shaanxi increased by approximately 29.3%, from 611.72 Tg in 1993 to 790.75 Tg in 2008, partially as a result of ecological restoration projects. The spatial pattern of C storage in forest ecosystems mainly exhibited a latitude-zonal distribution across the province, increasing from north (high latitude) to south (low latitude) generally, which signifies the effect of environmental conditions, chiefly water and heat related factors, on forest growth and C sequestration. In addition, different data sources and estimation methods had a significant effect on the results obtained, with the C stocks in 2008 being considerably overestimated (864.55 Tg) and slightly underestimated (778.07 Tg) when measured using the mean C density method and integrated method, respectively. Overall, our results demonstrated that the forest ecosystem in Shaanxi acted as a C sink over the last few decades. However, further studies should be carried out with a focus on adaption of plants to environmental factors along with forest management for vegetation restoration to maximize the C sequestration potential and to better cope with climate change. PMID:26353011

  1. Capturing spatial and temporal patterns of widespread, extreme flooding across Europe

    NASA Astrophysics Data System (ADS)

    Busby, Kathryn; Raven, Emma; Liu, Ye

    2013-04-01

    Statistical characterisation of physical hazards is an integral part of probabilistic catastrophe models used by the reinsurance industry to estimate losses from large scale events. Extreme flood events are not restricted by country boundaries which poses an issue for reinsurance companies as their exposures often extend beyond them. We discuss challenges and solutions that allow us to appropriately capture the spatial and temporal dependence of extreme hydrological events on a continental-scale, which in turn enables us to generate an industry-standard stochastic event set for estimating financial losses for widespread flooding. By presenting our event set methodology, we focus on explaining how extreme value theory (EVT) and dependence modelling are used to account for short, inconsistent hydrological data from different countries, and how to make appropriate statistical decisions that best characterise the nature of flooding across Europe. The consistency of input data is of vital importance when identifying historical flood patterns. Collating data from numerous sources inherently causes inconsistencies and we demonstrate our robust approach to assessing the data and refining it to compile a single consistent dataset. This dataset is then extrapolated using a parameterised EVT distribution to estimate extremes. Our method then captures the dependence of flood events across countries using an advanced multivariate extreme value model. Throughout, important statistical decisions are explored including: (1) distribution choice; (2) the threshold to apply for extracting extreme data points; (3) a regional analysis; (4) the definition of a flood event, which is often linked with reinsurance industry's hour's clause; and (5) handling of missing values. Finally, having modelled the historical patterns of flooding across Europe, we sample from this model to generate our stochastic event set comprising of thousands of events over thousands of years. We then briefly illustrate how this is applied within a probabilistic model to estimate catastrophic loss curves used by the reinsurance industry.

  2. Convergence and Divergence in the Evolution of Cat Skulls: Temporal and Spatial Patterns of Morphological Diversity

    PubMed Central

    Sakamoto, Manabu; Ruta, Marcello

    2012-01-01

    Background Studies of biological shape evolution are greatly enhanced when framed in a phylogenetic perspective. Inclusion of fossils amplifies the scope of macroevolutionary research, offers a deep-time perspective on tempo and mode of radiations, and elucidates life-trait changes. We explore the evolution of skull shape in felids (cats) through morphometric analyses of linear variables, phylogenetic comparative methods, and a new cladistic study of saber-toothed cats. Methodology/Principal Findings A new phylogenetic analysis supports the monophyly of saber-toothed cats (Machairodontinae) exclusive of Felinae and some basal felids, but does not support the monophyly of various saber-toothed tribes and genera. We quantified skull shape variation in 34 extant and 18 extinct species using size-adjusted linear variables. These distinguish taxonomic group membership with high accuracy. Patterns of morphospace occupation are consistent with previous analyses, for example, in showing a size gradient along the primary axis of shape variation and a separation between large and small-medium cats. By combining the new phylogeny with a molecular tree of extant Felinae, we built a chronophylomorphospace (a phylogeny superimposed onto a two-dimensional morphospace through time). The evolutionary history of cats was characterized by two major episodes of morphological divergence, one marking the separation between saber-toothed and modern cats, the other marking the split between large and small-medium cats. Conclusions/Significance Ancestors of large cats in the ‘Panthera’ lineage tend to occupy, at a much later stage, morphospace regions previously occupied by saber-toothed cats. The latter radiated out into new morphospace regions peripheral to those of extant large cats. The separation between large and small-medium cats was marked by considerable morphologically divergent trajectories early in feline evolution. A chronophylomorphospace has wider applications in reconstructing temporal transitions across two-dimensional trait spaces, can be used in ecophenotypical and functional diversity studies, and may reveal novel patterns of morphospace occupation. PMID:22792186

  3. Temporal Dynamics of Sodic Playa Salt Crust Patterns: Implications for Aeolian Dust Emission Potential

    NASA Astrophysics Data System (ADS)

    Nield, J. M.; King, J.; Bryant, R. G.; Wiggs, G.; Eckardt, F. D.; Thomas, D. S.; Washington, R.

    2013-12-01

    Salt pans (or playas) are common in arid environments and can be major sources of windblown mineral dust, but there are uncertainties associated with their dust emission potential. These landforms typically form crusts which modify both their erosivity and erodibility by limiting sediment availability, modifying surface and aerodynamic roughness and limiting evaporation rates and sediment production. Here we show the relationship between seasonal surface moisture change and crust pattern development based on both remote-sensing and field surface and atmospheric measurements. We use high resolution (sub-cm) terrestrial laser scanning (TLS; ground-based lidar) surveys over weekly, monthly and annual timescales to accurately characterise crustal ridge thrusting and collapse. This can be as much as 2 mm/day on fresh pan areas that have recently been reset by flooding. Over a two month period, this ridge growth can change aerodynamic roughness length values by 6.5 mm. At the same time, crack densities across the surface increase and this raises the availability of erodible fluffy, low density dust source sediment stored below the crust layer. Ridge spaces are defined in the early stages of crust development, as identified by Fourier Transform analysis, but wider wavelengths become more pronounced over time. We present a conceptual model accounting for the driving forces (subsurface, surface and atmospheric moisture) and feedbacks between these and surface shape that lead to crust pattern trajectories between highly emissive degraded surfaces and less emissive ridged or continuous crusts. These findings improve our understanding of temporal changes in dust availability and supply from playa source regions.

  4. Prevalence and temporal pattern of hospital readmissions for patients with type I and type II diabetes

    PubMed Central

    Liu, Xiaoqian; Liu, Yuanyuan; Lv, Yuanjun; Li, Changping; Cui, Zhuang; Ma, Jun

    2015-01-01

    Objective Repeated hospitalisation for patients is common and costly, yet partly preventable. However, we know little about readmissions for patients with diabetes in China. The current study aims to assess the frequency and temporal pattern of and risk factors for all-cause readmission among hospitalised patients with diabetes in Tianjin, China. Method This retrospective, cohort analysis used the Tianjin Basic Medical Insurance Register System data of 2011. The patterns of and the reasons for all-cause readmissions for patients with diabetes were described. The differences of readmission-free survival (RFS) between newly and previously diagnosed patients were compared. Time-dependent Cox models were established to identify the risk factors for readmission at different time intervals after discharge. Results Readmission rates were approximately 30%, with the most common diagnoses of cerebral infarction (for type I) or diabetes (for type II) for patients with diabetes. The majority of patients were readmitted to the hospital after more than 90?days, followed by 8–30?days (all p=0.002). Approximately 37.2% and 42.8% of readmitted patients with type I and type II diabetes were diagnosed previously, and the RFS rates for previously diagnosed patients were significantly lower than for newly diagnosed patients at any time interval after discharge. Prior history of diabetes (all p<0.05), length of stay (all p<0.01) and reimbursement ratio (90% vs >92%, all p<0.0002) were consistently associated with the RFS for patients readmitted to the hospital at <7, 8–30, 31–60 and 61–90?days. Conclusions Hospital readmissions among patients with diabetes were affected by the diagnosis status. Patient characteristics and the quality of healthcare might regulate short-interval and long-interval hospital readmission, respectively, after discharge. PMID:26525716

  5. Spatio-Temporal Expression Patterns of Arabidopsis thaliana and Medicago truncatula Defensin-Like Genes

    PubMed Central

    Nallu, Sumitha; Wang, Lin; Botanga, Christopher J.; Gomez, S. Karen; Costa, Liliana M.; Harrison, Maria J.; Samac, Deborah A.; Glazebrook, Jane; Katagiri, Fumiaki; Gutierrez-Marcos, Jose F.; VandenBosch, Kathryn A.

    2013-01-01

    Plant genomes contain several hundred defensin-like (DEFL) genes that encode short cysteine-rich proteins resembling defensins, which are well known antimicrobial polypeptides. Little is known about the expression patterns or functions of many DEFLs because most were discovered recently and hence are not well represented on standard microarrays. We designed a custom Affymetrix chip consisting of probe sets for 317 and 684 DEFLs from Arabidopsis thaliana and Medicago truncatula, respectively for cataloging DEFL expression in a variety of plant organs at different developmental stages and during symbiotic and pathogenic associations. The microarray analysis provided evidence for the transcription of 71% and 90% of the DEFLs identified in Arabidopsis and Medicago, respectively, including many of the recently annotated DEFL genes that previously lacked expression information. Both model plants contain a subset of DEFLs specifically expressed in seeds or fruits. A few DEFLs, including some plant defensins, were significantly up-regulated in Arabidopsis leaves inoculated with Alternaria brassicicola or Pseudomonas syringae pathogens. Among these, some were dependent on jasmonic acid signaling or were associated with specific types of immune responses. There were notable differences in DEFL gene expression patterns between Arabidopsis and Medicago, as the majority of Arabidopsis DEFLs were expressed in inflorescences, while only a few exhibited root-enhanced expression. By contrast, Medicago DEFLs were most prominently expressed in nitrogen-fixing root nodules. Thus, our data document salient differences in DEFL temporal and spatial expression between Arabidopsis and Medicago, suggesting distinct signaling routes and distinct roles for these proteins in the two plant species. PMID:23527067

  6. Temporal-Spatial Pattern of Carbon Stocks in Forest Ecosystems in Shaanxi, Northwest China

    PubMed Central

    Cui, Gaoyang; Chen, Yunming; Cao, Yang

    2015-01-01

    The precise and accurate quantitative evaluation of the temporal and spatial pattern of carbon (C) storage in forest ecosystems is critical for understanding the role of forests in the global terrestrial C cycle and is essential for formulating forest management policies to combat climate change. In this study, we examined the C dynamics of forest ecosystems in Shaanxi, northwest China, based on four forest inventories (1989–1993, 1994–1998, 1999–2003, and 2004–2008) and field-sampling measurements (2012). The results indicate that the total C storage of forest ecosystems in Shaanxi increased by approximately 29.3%, from 611.72 Tg in 1993 to 790.75 Tg in 2008, partially as a result of ecological restoration projects. The spatial pattern of C storage in forest ecosystems mainly exhibited a latitude-zonal distribution across the province, increasing from north (high latitude) to south (low latitude) generally, which signifies the effect of environmental conditions, chiefly water and heat related factors, on forest growth and C sequestration. In addition, different data sources and estimation methods had a significant effect on the results obtained, with the C stocks in 2008 being considerably overestimated (864.55 Tg) and slightly underestimated (778.07 Tg) when measured using the mean C density method and integrated method, respectively. Overall, our results demonstrated that the forest ecosystem in Shaanxi acted as a C sink over the last few decades. However, further studies should be carried out with a focus on adaption of plants to environmental factors along with forest management for vegetation restoration to maximize the C sequestration potential and to better cope with climate change. PMID:26353011

  7. CLASSIFICATION OF FOOD KERNELS WITH IMPACT ACOUSTICS TIME-1 FREQUENCY PATTERNS2

    E-print Network

    Minnesota, University of

    13 signals for detecting hazelnuts with cracked shells and damaged wheat kernels. The impact acoustic%, 82% and22 94%, respectively. For the cracked undamaged shell hazelnut separation, the overall in hazelnut production. Environmental conditions and processing procedures may decrease39 nut quality

  8. Acoustic Modal Patterns and Striations (AMPS) experiment G-325, Norfolk Public Schools

    NASA Technical Reports Server (NTRS)

    Young, Joy W.

    1995-01-01

    This paper will describe how high school students with the guidance of volunteer mentors were able to successfully complete an acoustics space experiment. Some of the NORSTAR program strategies used to effectively accomplish this goal will be discussed. The experiment and present status of results will be explained.

  9. Automated pattern analysis: A newsilent partner in insect acoustic detection studies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This seminar reviews methods that have been developed for automated analysis of field-collected sounds used to estimate pest populations and guide insect pest management decisions. Several examples are presented of successful usage of acoustic technology to map insect distributions in field environ...

  10. Hierarchical Bayesian modeling of spatio-temporal patterns of lung cancer incidence risk in Georgia, USA: 2000-2007

    NASA Astrophysics Data System (ADS)

    Yin, Ping; Mu, Lan; Madden, Marguerite; Vena, John E.

    2014-10-01

    Lung cancer is the second most commonly diagnosed cancer in both men and women in Georgia, USA. However, the spatio-temporal patterns of lung cancer risk in Georgia have not been fully studied. Hierarchical Bayesian models are used here to explore the spatio-temporal patterns of lung cancer incidence risk by race and gender in Georgia for the period of 2000-2007. With the census tract level as the spatial scale and the 2-year period aggregation as the temporal scale, we compare a total of seven Bayesian spatio-temporal models including two under a separate modeling framework and five under a joint modeling framework. One joint model outperforms others based on the deviance information criterion. Results show that the northwest region of Georgia has consistently high lung cancer incidence risk for all population groups during the study period. In addition, there are inverse relationships between the socioeconomic status and the lung cancer incidence risk among all Georgian population groups, and the relationships in males are stronger than those in females. By mapping more reliable variations in lung cancer incidence risk at a relatively fine spatio-temporal scale for different Georgian population groups, our study aims to better support healthcare performance assessment, etiological hypothesis generation, and health policy making.

  11. We'll Meet Again: Revealing Distributional and Temporal Patterns of Social Contact

    PubMed Central

    Pachur, Thorsten; Schooler, Lael J.; Stevens, Jeffrey R.

    2014-01-01

    What are the dynamics and regularities underlying social contact, and how can contact with the people in one's social network be predicted? In order to characterize distributional and temporal patterns underlying contact probability, we asked 40 participants to keep a diary of their social contacts for 100 consecutive days. Using a memory framework previously used to study environmental regularities, we predicted that the probability of future contact would follow in systematic ways from the frequency, recency, and spacing of previous contact. The distribution of contact probability across the members of a person's social network was highly skewed, following an exponential function. As predicted, it emerged that future contact scaled linearly with frequency of past contact, proportionally to a power function with recency of past contact, and differentially according to the spacing of past contact. These relations emerged across different contact media and irrespective of whether the participant initiated or received contact. We discuss how the identification of these regularities might inspire more realistic analyses of behavior in social networks (e.g., attitude formation, cooperation). PMID:24475073

  12. Temporal patterns of infiltration into a water repellent soil under field conditions

    NASA Astrophysics Data System (ADS)

    Ward, Phil; Roper, Margaret; Micin, Shayne; Jongepier, Ramona

    2014-05-01

    Water repellency causes substantial economic losses for farmers in southern Australia through impacts on crop growth and weed germination. However, recent research has demonstrated that laboratory measurements of water repellency may not be a reliable indicator of the severity of symptoms experienced in the field. In particular, crop residue retention and minimal soil disturbance led to increased water repellency, but was also associated with higher soil water contents measured at strategic times of the year. Little is known about the temporal patterns of soil water storage close to the soil surface in a water repellent sand. In this research we measured soil water content at a depth of 0.05 m at 15-minute intervals from June 2011 to October 2012, under various treatment combinations of residue retention and soil disturbance. Measurements were made in both 'crop row' and 'crop inter-row' positions. For a rainfall event (9.2 mm) in March 2012, prior to crop seeding, plots previously established with no-till absorbed significantly more water (increase in soil water content of 0.074 v/v) than plots conventionally cultivated (0.038 v/v). In June 2012 (12.6 mm), 4 weeks after crop seeding, tillage was again significant, and there was a significant interaction between tillage and 'row' or 'inter-row' position. These results demonstrate the importance of crop management in modifying the response of water repellent soils to rainfall in the field.

  13. Long-period seismic events with strikingly regular temporal patterns on Katla volcano's south flank (Iceland)

    E-print Network

    Sgattoni, Giulia; Guðmundsson, Ólafur; Einarsson, Páll; Tryggvason, Ari; Lund, Björn; Lucchi, Federico

    2015-01-01

    Katla is a threatening volcano in Iceland, partly covered by the M\\'yrdalsj\\"okull ice cap. The volcano has a large caldera with several active geothermal areas. A peculiar cluster of long-period seismic events started on Katla's south flank in July 2011, during an unrest episode in the caldera that culminated in a glacier outburst. The seismic events were tightly clustered at shallow depth in the Gvendarfell area, 4 km south of the caldera, under a small glacier stream on the southern margin of M\\'yrdalsj\\"okull. No seismic events were known to have occurred in this area before. The most striking feature of this seismic cluster is its temporal pattern, characterized by regular intervals between repeating seismic events, modulated by a seasonal variation. Remarkable is also the stability of both the time and waveform features over a long time period, around 3.5 years. No comparable examples have been found in the literature. Both volcanic and glacial processes can produce similar waveforms and therefore have ...

  14. Spatio-temporal pattern analysis of urban thermal environment of different types of cities

    NASA Astrophysics Data System (ADS)

    Liu, Yang; Liu, Huanjun; Zhang, Yuanzhi; Zhang, Xinle; Zang, Hongting; Hu, Wen

    2014-03-01

    Cities with different functions show variable thermal patterns. This study directs at horizontal contrasting the heat island effect of cities and towns in the same latitude. The data source was Landsat TM, by which the thermal infrared bands is used with the algorithm of ARTIS inversion of Heilongjiang Province to acquire the surface temperature of Ha-Qi different types of cities in 1995(1989), 2006 and 2010. In this paper we analyzed the land surface temperature(LST) of temporal, spatial and regional. The results show that a high zone is mainly centralized in the old city and industrial zone. Impervious surface increase leads to temperature rise. Relatively high and low zone fluctuation is due to human activities influence. Climate is one of the key factors to affect the LST, such as precipitation and drought. Through the analysis of urban thermal environment, the process of urbanization can be monitored, to provide accurate information for the quality evaluation of urban thermal environment and heat source survey.

  15. We'll meet again: revealing distributional and temporal patterns of social contact.

    PubMed

    Pachur, Thorsten; Schooler, Lael J; Stevens, Jeffrey R

    2014-01-01

    What are the dynamics and regularities underlying social contact, and how can contact with the people in one's social network be predicted? In order to characterize distributional and temporal patterns underlying contact probability, we asked 40 participants to keep a diary of their social contacts for 100 consecutive days. Using a memory framework previously used to study environmental regularities, we predicted that the probability of future contact would follow in systematic ways from the frequency, recency, and spacing of previous contact. The distribution of contact probability across the members of a person's social network was highly skewed, following an exponential function. As predicted, it emerged that future contact scaled linearly with frequency of past contact, proportionally to a power function with recency of past contact, and differentially according to the spacing of past contact. These relations emerged across different contact media and irrespective of whether the participant initiated or received contact. We discuss how the identification of these regularities might inspire more realistic analyses of behavior in social networks (e.g., attitude formation, cooperation). PMID:24475073

  16. Multi-Voxel Pattern Analysis of Noun and Verb Differences in Ventral Temporal Cortex Marked Revision

    PubMed Central

    Boylan, Christine; Trueswell, John C.; Thompson-Schill, Sharon L.

    2014-01-01

    Recent evidence suggests a probabilistic relationship exists between the phonological/orthographic form of a word and its lexical-syntactic category (specifically nouns vs. verbs) such that syntactic prediction may elicit form-based estimates in sensory cortex. We tested this hypothesis by conducting multi-voxel pattern analysis (MVPA) of fMRI data from early visual cortex (EVC), left ventral temporal (VT) cortex, and a subregion of the latter - the left mid fusiform gyrus (mid FG), sometimes called the “visual word form area.” Crucially, we examined only those volumes sampled when subjects were predicting, but not viewing, nouns and verbs. This allowed us to investigate prediction effects in visual areas without any bottom-up orthographic input. We found that voxels in VT and mid FG, but not in EVC, were able to classify noun-predictive trials vs. verb-predictive trials in sentence contexts, suggesting that sentence-level predictions are sufficient to generate word form-based estimates in visual areas. PMID:25156159

  17. Temporal patterns in the intertidal faunal community at the mouth of a tropical estuary.

    PubMed

    Lacerda, C H F; Barletta, M; Dantas, D V

    2014-11-01

    The use of intertidal sandy beaches by fish and macrocrustaceans was studied at different temporal scales at the mouth of a tropical estuary. Samples were taken along the lunar and diel cycles in the late dry and rainy seasons. Fish assemblage (number of species, density and biomass), crustaceans and wrack biomass, showed significant interactions among all studied factors, and the combination of moon phase and diel cycle, resulting in different patterns of environmental variables (depth, water temperature and dissolved oxygen), affected habitat use by the different species. Variances in faunal community were detected between seasons, stimulated by salinity fluctuations from freshwater input during the rainy season. These differences suggest an important cycling of habitats and an increase in connectivity between adjacent habitats (estuary and coastal waters). Moreover, the results showed that this intertidal sandy beach also provides an alternative nursery and protected shallow-water area for the initial development phase of many marine and estuarine species. In addition, this intertidal habitat plays an important role in the maintenance of the ecological functioning of the estuarine-coastal ecosystem continuum. PMID:25315884

  18. The use of satellite data for monitoring temporal and spatial patterns of fire: a comprehensive review

    NASA Astrophysics Data System (ADS)

    Lasaponara, R.

    2009-04-01

    Remotely sensed (RS) data can fruitfully support both research activities and operative monitoring of fire at different temporal and spatial scales with a synoptic view and cost effective technologies. "The contribution of remote sensing (RS) to forest fires may be grouped in three categories, according to the three phases of fire management: (i) risk estimation (before fire), (ii) detection (during fire) and (iii) assessment (after fire)" Chuvieco (2006). Relating each phase, wide research activities have been conducted over the years. (i) Risk estimation (before fire) has been mainly based on the use of RS data for (i) monitoring vegetation stress and assessing variations in vegetation moisture content, (ii) fuel type mapping, at different temporal and spatial scales from global, regional down to a local scale (using AVHRR, MODIS, TM, ASTER, Quickbird images and airborne hyperspectral and LIDAR data). Danger estimation has been mainly based on the use of AVHRR (onborad NOAA), MODIS (onboard TERRA and AQUA), VEGETATION (onboard SPOT) due to the technical characteristics (i.e. spectral, spatial and temporal resolution). Nevertheless microwave data have been also used for vegetation monitoring. (ii) Detection: identification of active fires, estimation of fire radiative energy and fire emission. AVHRR was one of the first satellite sensors used for setting up fire detection algorithms. The availbility of MODIS allowed us to obtain global fire products free downloaded from NASA web site. Sensors onboard geostationary satellite platforms, such as GOES, SEVIRI, have been used for fire detection, to obtain a high temporal resolution (at around 15 minutes) monitoring of active fires. (iii) Post fire damage assessment includes: burnt area mapping, fire emission, fire severity, vegetation recovery, fire resilience estimation, and, more recently, fire regime characterization. Chuvieco E. L. Giglio, C. Justice, 2008 Global charactrerization of fire activity: toward defining fire regimes from Earth observation data Global Change Biology vo. 14. doi: 10.1111/j.1365-2486.2008.01585.x 1-15, Chuvieco E., P. Englefield, Alexander P. Trishchenko, Yi Luo Generation of long time series of burn area maps of the boreal forest from NOAA-AVHRR composite data. Remote Sensing of Environment, Volume 112, Issue 5, 15 May 2008, Pages 2381-2396 Chuvieco Emilio 2006, Remote Sensing of Forest Fires: Current limitations and future prospects in Observing Land from Space: Science, Customers and Technology, Advances in Global Change Research Vol. 4 pp 47-51 De Santis A., E. Chuvieco Burn severity estimation from remotely sensed data: Performance of simulation versus empirical models, Remote Sensing of Environment, Volume 108, Issue 4, 29 June 2007, Pages 422-435. De Santis A., E. Chuvieco, Patrick J. Vaughan, Short-term assessment of burn severity using the inversion of PROSPECT and GeoSail models, Remote Sensing of Environment, Volume 113, Issue 1, 15 January 2009, Pages 126-136 García M., E. Chuvieco, H. Nieto, I. Aguado Combining AVHRR and meteorological data for estimating live fuel moisture content Remote Sensing of Environment, Volume 112, Issue 9, 15 September 2008, Pages 3618-3627 Ichoku C., L. Giglio, M. J. Wooster, L. A. Remer Global characterization of biomass-burning patterns using satellite measurements of fire radiative energy. Remote Sensing of Environment, Volume 112, Issue 6, 16 June 2008, Pages 2950-2962. Lasaponara R. and Lanorte, On the capability of satellite VHR QuickBird data for fuel type characterization in fragmented landscape Ecological Modelling Volume 204, Issues 1-2, 24 May 2007, Pages 79-84 Lasaponara R., A. Lanorte, S. Pignatti,2006 Multiscale fuel type mapping in fragmented ecosystems: preliminary results from Hyperspectral MIVIS and Multispectral Landsat TM data, Int. J. Remote Sens., vol. 27 (3) pp. 587-593. Lasaponara R., V. Cuomo, M. F. Macchiato, and T. Simoniello, 2003 .A self-adaptive algorithm based on AVHRR multitemporal data analysis for small active fire detection.n International Journal of Remote Sen

  19. Medio-Frontal and Anterior Temporal abnormalities in children with attention deficit hyperactivity disorder (ADHD) during an acoustic antisaccade task as revealed by electro-cortical source reconstruction

    PubMed Central

    2011-01-01

    Background Attention Deficit Hyperactivity Disorder (ADHD) is one of the most prevalent disorders in children and adolescence. Impulsivity is one of three core symptoms and likely associated with inhibition difficulties. To date the neural correlate of the antisaccade task, a test of response inhibition, has not been studied in children with (or without) ADHD. Methods Antisaccade responses to visual and acoustic cues were examined in nine unmedicated boys with ADHD (mean age 122.44 ± 20.81 months) and 14 healthy control children (mean age 115.64 ± 22.87 months, three girls) while an electroencephalogram (EEG) was recorded. Brain activity before saccade onset was reconstructed using a 23-source-montage. Results When cues were acoustic, children with ADHD had a higher source activity than control children in Medio-Frontal Cortex (MFC) between -230 and -120 ms and in the left-hemispheric Temporal Anterior Cortex (TAC) between -112 and 0 ms before saccade onset, despite both groups performing similarly behaviourally (antisaccades errors and saccade latency). When visual cues were used EEG-activity preceding antisaccades did not differ between groups. Conclusion Children with ADHD exhibit altered functioning of the TAC and MFC during an antisaccade task elicited by acoustic cues. Children with ADHD need more source activation to reach the same behavioural level as control children. PMID:21226906

  20. Discovering temporal patterns in water quality time series, focusing on floods with the LDA method

    NASA Astrophysics Data System (ADS)

    Hélène Aubert, Alice; Tavenard, Romain; Emonet, Rémi; Malinowski, Simon; Guyet, Thomas; Quiniou, René; Odobez, Jean-Marc; Gascuel-Odoux, Chantal

    2013-04-01

    Studying floods has been a major issue in hydrological research for years. It is often done in terms of water quantity but it is also of interest in terms of water quality. Stream chemistry is a mix of solutes. They originate from various sources in the catchment, reach the stream by various flow pathways and are transformed by biogeochemical reactions at different locations. Therefore, we hypothesized that reaction of the stream chemistry to a rainfall event is not unique but varies according to the season (1), and the global meteorological conditions of the year (2). Identifying a typology of temporal chemical patterns of reaction to a rainfall event is a way to better understand catchment processes at the flood time scale. To answer this issue, we applied a probabilistic model (Latent Dirichlet Allocation or LDA (3)) mining recurrent sequential patterns to a dataset of floods. The dataset is 12 years long and daily recorded. It gathers a broad range of parameters from which we selected rainfall, discharge, water table depth, temperature as well as nitrate, dissolved organic carbon, sulphate and chloride concentrations. It comes from a long-term hydrological observatory (AgrHys, western France) located at Kervidy-Naizin. A set of 472 floods was automatically extracted (4). From each flood, a document has been generated that is made of a set of "hydrological words". Each hydrological word corresponds to a measurement: it is a triplet made of the considered variable, the time at which the measurement is made (relative to the beginning of the flood), and its magnitude (that can be low, medium or high). The documents are used as input data to the LDA algorithm. LDA relies on spotting co-occurrences (as an alternative to the more traditional study of correlation) between words that appear within the flood documents. It has two nice properties that are its ability to easily deal with missing data and its additive property that allows a document to be seen as a mixture of several flood patterns. The output of LDA is a set of patterns that can easily be represented in graphics. These patterns correspond to typical reactions to rainfall events. The patterns themselves are carefully studied, as well as their repartition along the year and along the 12 years of the dataset. The novelties are fourfold. First, as a methodological point of view, we learn that hydrological data can be analyzed with this LDA model giving a typology of a multivariate chemical signature of floods. Second, we outline that chemistry parameters are sufficient to obtain meaningful patterns. There is no need to include hydro-meteorological parameters to define the patterns. However, hydro-meteorological parameters are useful to understand the processes leading to these patterns. Third, our hypothesis of seasonal specific reaction to rainfall is verified, moreover detailed; so is our hypothesis of different reactions to rainfall for years with different hydro-meteorological conditions. Fourth, this method allows the consideration of overlapping floods that are usually not studied. We would recommend the use of such model to study chemical reactions of stream after rainfall events, or more broadly after any hydrological events. The typology that has been provided by this method is a kind of bar code of water chemistry during floods. It could be well suited to compare different geographical locations by using the same patterns and analysing the resulting different pattern distributions. (1) Aubert, A.H. et al., 2012. The chemical signature of a livestock farming catchment: synthesis from a high-frequency multi-element long term monitoring. HESSD, 9(8): 9715 - 9741. (2) Aubert, A.H., Gascuel-Odoux, C., Merot, P., 2013. Annual hysteresis of water quality: A method to analyse the effect of intra- and inter-annual climatic conditions. Journal of Hydrology, 478(0): 29-39. (3) Blei, D. M.; Ng, A. Y.; Jordan, M. I., 2003. Latent Dirichlet allocation. Journal of Machine Learning Research, 3(4-5): 993-1022. (4) de Lavenne, A., Cudennec, C., Streamflow velocity

  1. Spatio-Temporal Pattern and Socio-Economic Factors of Bacillary Dysentery at County Level in Sichuan Province, China

    PubMed Central

    Ma, Yue; Zhang, Tao; Liu, Lei; Lv, Qiang; Yin, Fei

    2015-01-01

    Bacillary dysentery (BD) remains a big public health problem in China. Effective spatio-temporal monitoring of BD incidence is important for successful implementation of control and prevention measures. This study aimed to examine the spatio-temporal pattern of BD and analyze socio-economic factors that may affect BD incidence in Sichuan province, China. Firstly, we used space-time scan statistic to detect the high risk spatio-temporal clusters in each year. Then, bivariate spatial correlation and Bayesian spatio-temporal model were utilized to examine the associations between the socio-economic factors and BD incidence. Spatio-temporal clusters of BD were mainly located in the northern-southern belt of the midwest area of Sichuan province. The proportion of primary industry, the proportion of rural population and the rates of BD incidence show statistically significant positive correlation. The proportion of secondary industry, proportion of tertiary Industry, number of beds in hospitals per thousand persons, medical and technical personnel per thousand persons, per capital GDP and the rate of BD incidence show statistically significant negative correlation. The best fitting spatio-temporal model showed that medical and technical personnel per thousand persons and per capital GDP were significantly negative related to the risk of BD. PMID:26469274

  2. Spatio-Temporal Pattern and Socio-Economic Factors of Bacillary Dysentery at County Level in Sichuan Province, China.

    PubMed

    Ma, Yue; Zhang, Tao; Liu, Lei; Lv, Qiang; Yin, Fei

    2015-01-01

    Bacillary dysentery (BD) remains a big public health problem in China. Effective spatio-temporal monitoring of BD incidence is important for successful implementation of control and prevention measures. This study aimed to examine the spatio-temporal pattern of BD and analyze socio-economic factors that may affect BD incidence in Sichuan province, China. Firstly, we used space-time scan statistic to detect the high risk spatio-temporal clusters in each year. Then, bivariate spatial correlation and Bayesian spatio-temporal model were utilized to examine the associations between the socio-economic factors and BD incidence. Spatio-temporal clusters of BD were mainly located in the northern-southern belt of the midwest area of Sichuan province. The proportion of primary industry, the proportion of rural population and the rates of BD incidence show statistically significant positive correlation. The proportion of secondary industry, proportion of tertiary Industry, number of beds in hospitals per thousand persons, medical and technical personnel per thousand persons, per capital GDP and the rate of BD incidence show statistically significant negative correlation. The best fitting spatio-temporal model showed that medical and technical personnel per thousand persons and per capital GDP were significantly negative related to the risk of BD. PMID:26469274

  3. A generic regional spatio-temporal co-occurrence pattern mining model: a case study for air pollution

    NASA Astrophysics Data System (ADS)

    Akbari, Mohammad; Samadzadegan, Farhad; Weibel, Robert

    2015-07-01

    Spatio-temporal co-occurrence patterns represent subsets of object types which are located together in both space and time. Existing algorithms for co-occurrence pattern mining cannot handle complex applications such as air pollution in several ways. First, the existing models assume that spatial relationships between objects are explicitly represented in the input data, while the new method allows extracting implicitly contained spatial relationships algorithmically. Second, instead of extracting co-occurrence patterns of only point data, the proposed method deals with different feature types that is with point, line and polygon data. Thus, it becomes relevant for a wider range of real applications. Third, it also allows mining a spatio-temporal co-occurrence pattern simultaneously in space and time so that it illustrates the evolution of patterns over space and time. Furthermore, the proposed algorithm uses a Voronoi tessellation to improve efficiency. To evaluate the proposed method, it was applied on a real case study for air pollution where the objective is to find correspondences of air pollution with other parameters which affect this phenomenon. The results of evaluation confirm not only the capability of this method for co-occurrence pattern mining of complex applications, but also it exhibits an efficient computational performance.

  4. Geospatial and temporal patterns of annual cholera outbreaks in Matlab, Bangladesh

    NASA Astrophysics Data System (ADS)

    Majumder, M. S.; de Klerk, K.; Meyers, D.

    2012-12-01

    Cholera is a waterborne diarrheal disease endemic to Bangladesh, resulting in 1 million diagnoses annually. Such disease burden results in incalculable lost wages and treatment expenses, taken from the pockets of an already impoverished society. Two seasonally correlated outbreaks of cholera occur in Bangladesh every year. In the spring and early summer, the Bay of Bengal - which serves as a natural reservoir for the cholera bacteria - flows inland, causing the first outbreak amongst coastal communities. Waste containing the cholera bacteria enters the sewage system and remains untreated due to poor water and sanitation infrastructure. Therefore, during the following monsoon season, flooding of cholera-contaminated sewage into drinking water sources results in a second outbreak. Though considered common knowledge among local populations, this geographic and temporal progression has not been empirically verified in the current literature. The aim of our ongoing study is to systematically analyze the seasonal trajectory of endemic cholera in Bangladesh. This paper discusses the results obtained from a comprehensive survey of available cholera data from the International Centre of Diarrheal Disease Research, Bangladesh (ICDDR,B) in Matlab, Bangladesh. Matlab thana is a near-coastal community that consists of 142 villages. Monsoon season takes place from June through October. Due to its proximity to the Meghna River, which opens into the Bay of Bengal, the area experiences significant flooding during these months. Using 10 years of geographically referenced cholera data, cases were plotted in time and space. Preliminary patterns suggest that villages closer to the Meghna River experience the majority of the area's cholera outbreaks and that case count is highest in late spring and late fall. April/May and November/December represent 25% and 23% of total annual case counts respectively. Moreover, villages further from the coastline demonstrate 57% higher relative prevalence in fall than in the spring. Such initial results demonstrate great promise in advancing our present knowledge of endemic cholera in Bangladesh. By improving our understanding of cholera proliferating in time and space, disease mitigation resources can be distributed to the most susceptible areas when they need them most. The next step forward for our ongoing study involves the use of mobile health (mHealth) case surveillance and cloud computing for real-time geographic and temporal cholera data acquisition.

  5. Spatial and Temporal Pattern of Rift Valley Fever Outbreaks in Tanzania; 1930 to 2007

    PubMed Central

    Sindato, Calvin; Karimuribo, Esron D.; Pfeiffer, Dirk U.; Mboera, Leonard E. G.; Kivaria, Fredrick; Dautu, George; Bernard, Bett; Paweska, Janusz T.

    2014-01-01

    Background Rift Valley fever (RVF)-like disease was first reported in Tanzania more than eight decades ago and the last large outbreak of the disease occurred in 2006–07. This study investigates the spatial and temporal pattern of RVF outbreaks in Tanzania over the past 80 years in order to guide prevention and control strategies. Materials and Methods A retrospective study was carried out based on disease reporting data from Tanzania at district or village level. The data were sourced from the Ministries responsible for livestock and human health, Tanzania Meteorological Agency and research institutions involved in RVF surveillance and diagnosis. The spatial distribution of outbreaks was mapped using ArcGIS 10. The space-time permutation model was applied to identify clusters of cases, and a multivariable logistic regression model was used to identify risk factors associated with the occurrence of outbreaks in the district. Principal Findings RVF outbreaks were reported between December and June in 1930, 1947, 1957, 1960, 1963, 1968, 1977–79, 1989, 1997–98 and 2006–07 in 39.2% of the districts in Tanzania. There was statistically significant spatio-temporal clustering of outbreaks. RVF occurrence was associated with the eastern Rift Valley ecosystem (OR?=?6.14, CI: 1.96, 19.28), total amount of rainfall of >405.4 mm (OR?=?12.36, CI: 3.06, 49.88), soil texture (clay [OR?=?8.76, CI: 2.52, 30.50], and loam [OR?=?8.79, CI: 2.04, 37.82]). Conclusion/Significance RVF outbreaks were found to be distributed heterogeneously and transmission dynamics appeared to vary between areas. The sequence of outbreak waves, continuously cover more parts of the country. Whenever infection has been introduced into an area, it is likely to be involved in future outbreaks. The cases were more likely to be reported from the eastern Rift Valley than from the western Rift Valley ecosystem and from areas with clay and loam rather than sandy soil texture. PMID:24586433

  6. [Spatial and temporal variation patterns in aquatic macroinvertebrates of Tecocomulco Lake, Hidalgo (México)].

    PubMed

    Rico-Sánchez, Axel Eduardo; Rodríguez-Romero, Alexis Joseph; López-López, Eugenia; Sedeño-Díaz, Jacinto Elías

    2014-04-01

    Lake Tecocomulco, Hidalgo, is a relic of the ancient lakes ofAnahuac, important for the conservation of resident and migratory birds. However, the composition of aquatic macroinvertebrates is unknown; this is an important gap in conservation as they play an important role in the food web. This study analyzed the spatial and temporal variations in macroinvertebrate assemblages and their relationship with habitat characteristics. We carried out four monitoring campaigns covering the rainy and dry seasons. The monitoring was conducted at six study sites (four in the littoral zone and two in the middle part of the lake), environmental factors were recorded at each study site, water samples were collected for their physical and chemical analysis and aquatic macroinvertebrates were collected. A principal component analysis (PCA) was used to group study sites based on physical and chemical characteristics. Richness of taxa was analysed with rarefaction. We assessed the importance value index of each taxon (considering their frequency of occurrence and abundance). Similarity analyzes were performed between study sites and similarity of taxa with indices of Jaccard and Bray-Curtis, respectively. We performed a canonical correspondence analysis (CCA) between environmental factors and macroinvertebrate taxa. The PCA showed a marked seasonal variation represented by warm periods, with high values of conductivity, alkalinity, hardness, sulfates, and macronutrients (N and P) and the cold period with low values. We found a total of 26 taxa of aquatic macroinvertebrates and the highest richness was found in August. The Jaccard similarity analysis found differences between the littoral area and the limnetic zone, which differ also in the composition of macrophytes. The littoral zone had the highest taxa richness of macroinvertebrates and macrophytes, while the lowest diversity was found in the offshore zone. The CCA related physicochemical characteristics of the water body with macroinvertebrate taxa showing the influence of both physicochemical characteristics and the composition of macrophytes in the spatio-temporal patterns of aquatic macroinvertebrates in the lake. The dominance of Corixidae highlights a strong grazing activity in the lake and in turn suggests an important amount of food available for higher trophic levels. Our study shows that the macroinvertebrates of Tecocomulco Lake have spatial and seasonal variations that are related to both environmental and biotic factors with groups being dominant. PMID:25189071

  7. Spatial-temporal patterns in Mediterranean carnivore road casualties: Consequences for mitigation

    USGS Publications Warehouse

    Grilo, C.; Bissonette, J.A.; Santos-Reis, M.

    2009-01-01

    Many carnivores have been seriously impacted by the expansion of transportation systems and networks; however we know little about carnivore response to the extent and magnitude of road mortality, or which age classes may be disproportionately impacted. Recent research has demonstrated that wildlife-vehicle-collisions (WVC) involving carnivores are modulated by temporal and spatial factors. Thus, we investigated road mortality on a guild of small and medium-sized carnivores in southern Portugal using road-kill data obtained from a systematic 36 months monitoring period along highways (260 km) and national roads (314 km) by addressing the following questions: (a) which species and age class are most vulnerable to WVC? (b) are there temporal and/or spatial patterns in road-kill? and (c) which life-history and/or spatial factors influence the likelihood of collisions? We recorded a total of 806 carnivore casualties, which represented an average of 47 ind./100 km/year. Red fox and stone marten had the highest mortality rates. Our findings highlight three key messages: (1) the majority of road-killed individuals were adults of common species; (2) all carnivores, except genets, were more vulnerable during specific life-history phenological periods: higher casualties were observed when red fox and stone marten were provisioning young, Eurasian badger casualties occurred more frequently during dispersal, and higher Egyptian mongoose mortality occurred during the breeding period; and (3) modeling demonstrated that favorable habitat, curves in the road, and low human disturbance were major contributors to the deadliest road segments. Red fox carcasses were more likely to be found on road sections with passages distant from urban areas. Conversely, stone marten mortalities were found more often on national roads with high of cork oak woodland cover; Egyptian mongoose and genet road-kills were found more often on road segments close to curves. Based on our results, two key mitigation measures should help to reduce WVC in Portugal. The first involves the improvement of existing crossings with buried and small mesh size fence to guide the individuals towards to the passages, in road segments with high traffic volume (>1200 vehicles/night) and located in preferred carnivore habitats. The second mitigation involves cutting or removal of dense vegetation in verges of road segments with curves to aid motorists in seeing animals about to cross. ?? 2008 Elsevier Ltd.

  8. Soft computing analysis of the possible correlation between temporal and energy release patterns in seismic activity

    NASA Astrophysics Data System (ADS)

    Konstantaras, Anthony; Katsifarakis, Emmanouil; Artzouxaltzis, Xristos; Makris, John; Vallianatos, Filippos; Varley, Martin

    2010-05-01

    This paper is a preliminary investigation of the possible correlation of temporal and energy release patterns of seismic activity involving the preparation processes of consecutive sizeable seismic events [1,2]. The background idea is that during periods of low-level seismic activity, stress processes in the crust accumulate energy at the seismogenic area whilst larger seismic events act as a decongesting mechanism releasing considerable energy [3,4]. A dynamic algorithm is being developed aiming to identify and cluster pre- and post- seismic events to the main earthquake following on research carried out by Zubkov [5] and Dobrovolsky [6,7]. This clustering technique along with energy release equations dependent on Richter's scale [8,9] allow for an estimate to be drawn regarding the amount of the energy being released by the seismic sequence. The above approach is being implemented as a monitoring tool to investigate the behaviour of the underlying energy management system by introducing this information to various neural [10,11] and soft computing models [1,12,13,14]. The incorporation of intelligent systems aims towards the detection and simulation of the possible relationship between energy release patterns and time-intervals among consecutive sizeable earthquakes [1,15]. Anticipated successful training of the imported intelligent systems may result in a real-time, on-line processing methodology [1,16] capable to dynamically approximate the time-interval between the latest and the next forthcoming sizeable seismic event by monitoring the energy release process in a specific seismogenic area. Indexing terms: pattern recognition, long-term earthquake precursors, neural networks, soft computing, earthquake occurrence intervals References [1] Konstantaras A., Vallianatos F., Varley M.R. and Makris J. P.: ‘Soft computing modelling of seismicity in the southern Hellenic arc', IEEE Geoscience and Remote Sensing Letters, vol. 5 (3), pp. 323-327, 2008 [2] Eneva M. and Ben-Zion Y.: ‘Techniques and parameters to analyze seismicity patterns associated with large earthquakes', Geophysics Res., vol. 102, pp. 17785-17795, 1997a [3] Habermann R. E.: ‘Precursory seismic quiescence: past, present and future', Pure Applied Geophysics, vol. 126, pp. 279-318, 1988 [4] Matthews M. V. and Reasenberg P. A.: ‘Statistical methods for investigating quiescence and other temporal seismicity patterns', Pure Applied Geophysics, vol. 126, pp. 357-372, 1988 [5] Zubkov S. I.: ‘The appearance times of earthquake precursors', Izv. Akad. Nauk SSSR Fiz. Zemli (Solid Earth), No. 5, pp. 87-91, 1987 [6] Dobrovolsky I. P., Zubkov S. I. and Miachkin V. I.: ‘Estimation of the size of earthquake preparation zones', Pageoph, vol. 117, pp. 1025-1044, 1979 [7] Dobrovolsky I. P., Gershenzon N. I. And Gokhberg M. B.: ‘Theory of electrokinetic effects occurring at the final stage in the preparation of a tectonic earthquake', Physics of the Earth and Planetary Interiors, vol. 57, pp. 144-156, 1989 [8] Richter C. F.: ‘Elementary Seismology', W.H.Freeman and Co., San Francisco, 1958 [9] Choy G. L. and Boatwright J. L.: ‘Global patterns of radiated seismic energy and apparent stress', Journal of Geophysical Research, vol. 84 (B5), pp. 2348-2350, 1995 [10] Haykin S.: ‘Neural Networks', 2nd Edition, Prentice Hall, 1999 [11] Jang J., Sun T. and Mizutany E.: ‘Neuro-fuzzy and soft computing', Prentice Hall, Upper Saddle River, NJ, 1997 [12] Konstantaras A., Varley M.R., Vallianatos F., Collins G. and Holifield P.: ‘Detection of weak seismo-electric signals upon the recordings of the electrotelluric field by means of neuron-fuzzy technology', IEEE Geoscience and Remote Sensing Letters, vol. 4 (1), 2007 [13] Konstantaras A., Varley M.R., Vallianatos F., Collins G. and Holifield P.: ‘Neuro-fuzzy prediction-based adaptive filtering applied to severely distorted magnetic field recordings', IEEE Geoscience and Remote Sensing Letters, vol. 3 (4), 2006 [14] Maravelakis E., Bilalis N., Keith J. and Antoniadis A.: ‘Measuring and Benchmarking the Innovativene

  9. Sequence-based mapping approach to spatio-temporal snow patterns from MODIS time-series applied to Scotland

    NASA Astrophysics Data System (ADS)

    Poggio, Laura; Gimona, Alessandro

    2015-02-01

    Snow cover and its monitoring are important because of the impact on important environmental variables, hydrological circulation and ecosystem services. For regional snow cover mapping and monitoring, the MODIS satellite sensors are particularly appealing. However cloud presence is an important limiting factor. This study addressed the problem of cloud cover for time-series in a boreal-Atlantic region where melting and re-covering of snow often do not follow the usual alpine-like patterns. A key requirement in this context was to apply improved methods to deal with the high cloud cover and the irregular spatio-temporal snow occurrence, through exploitation of space-time correlation of pixel values. The information contained in snow presence sequences was then used to derive summary indices to describe the time series patterns. Finally it was tested whether the derived indices can be considered an accurate summary of the snow presence data by establishing and evaluating their statistical relations with morphology and the landscape. The proposed cloud filling method had a good agreement (between 80 and 99%) with validation data even with a large number of pixels missing. The sequence analysis algorithm proposed takes into account the position of the states to fully consider the temporal dimension, i.e. the order in which a certain state appears in an image sequence compared to its neighbourhoods. The indices that were derived from the sequence of snow presence proved useful for describing the general spatio-temporal patterns of snow in Scotland as they were well related (more than 60% of explained deviance) with environmental information such as morphology supporting their use as a summary of snow patterns over time. The use of the derived indices is an advantage because of data reduction, easier interpretability and capture of sequence position-wise information (e.g. importance of short term fall/melt cycles). The derived seven clusters took into account the temporal patterns of the snow presence and they were well separated both spatially and according to the snow patterns and the environmental information. In conclusion, the use of sequences proved useful for analysing different spatio-temporal patterns of snow that could be related to other environmental information to characterize snow regimes regions in Scotland and to be integrated with ground measures for further hydrological and climatological analysis as baseline data for climate change models.

  10. Spatio-Temporal Patterns of Schistosomiasis Japonica in Lake and Marshland Areas in China: The Effect of Snail Habitats

    PubMed Central

    Hu, Yi; Gao, Jie; Chi, Meina; Luo, Can; Lynn, Henry; Sun, Liqian; Tao, Bo; Wang, Decheng; Zhang, Zhijie; Jiang, Qingwu

    2014-01-01

    The progress of the integrated control policy for schistosomiasis implemented since 2005 in China, which is aiming at reducing the roles of bovines and humans as infection sources, may be challenged by persistent presence of infected snails in lake and marshland areas. Based on annual parasitologic data for schistosomiasis during 2004–2011 in Xingzi County, a spatio-temporal kriging model was used to investigate the spatio-temporal pattern of schistosomiasis risk. Results showed that environmental factors related to snail habitats can explain the spatio-temporal variation of schistosomiasis. Predictive maps of schistosomiasis risk illustrated that clusters of the disease fluctuated during 2004–2008; there was an extensive outbreak in 2008 and attenuated disease occurrences afterwards. An area with an annually constant cluster of schistosomiasis was identified. Our study suggests that targeting snail habitats located within high-risk areas for schistosomiasis would be an economic and sustainable way of schistosomiasis control in the future. PMID:24980498

  11. Analysis and Monitoring of the Spatio-temporal Aerosol Patterns over Bangladesh

    NASA Astrophysics Data System (ADS)

    Mamun, M.; Islam, M.

    2012-12-01

    Nowadays climate change is the burning issue and atmospheric aerosols are vital parameter of the global climate system. So, atmospheric aerosols are one of the hot topics for present scientific research. Most remote sensing methods retrieve aerosol optical depth (AOD) to assess the aerosols and their various effects on environmental and climate system. However, there is lack of studies dealing with monitoring of aerosol patterns over Bangladesh. In this research, we have analyzed the spatial and temporal variations in aerosol load over Bangladesh, using MODerate resolution Imaging Spectroradiometer (MODIS) Level 3 remote sensing data. A Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) model was used to generate a backward trajectory in order to identify the origins of air masses, with the aim of understanding these spatial and temporal variabilities in aerosol concentrations. During the last decade, AODs have increased across Bangladesh and revealed a higher AOD concentration in western part but a much cleaner environment in eastern part. An assessment of monthly mean variations in AOD has exhibited maximum AODs in June and minimum AODs in October. Looking over seasonal variations during the last decade over Bangladesh showed maximum AOD values during the summer, while minimum AOD values showed during the post monsoon also an evidence of a decreasing AOD trend showed during the monsoon can be owing to an increase in monsoonal rainfall in Bangladesh, while all other seasons showed increasing trends. Northwestern part of Bangladesh has showed at the top of AOD concentration in winter season during the year 2010. Dense fog activities in northern part of Bangladesh may be the causes of this high AOD distribution. We also documented, the regional AOD variations over seven different divisions of Bangladesh, for which Dhaka and Sylhet divisions showed decreasing trends where all others showed increasing trends. Annual mean AODs have highest levels in Rajshahi and Khulna and lowest level in Sylhet. Back trajectory analysis indicates that Bangladesh is mainly affected by the pollutions and desert dust of India combining with sea salt particles blown from the Arabian Sea. The sources of air masses were arriving at lower altitudes (500m, 1500m) mainly in western India and Indian subcontinent but higher altitude (2500m) air masses were loading especially in winter season from far western regions, such as Europe and various sub-Sahara region of Africa. However, an exceptional result was observed in post monsoon of 2010 that different flow patterns of air masses were observed that the air masses were arriving in Sylhet from southeast in the direction, the sources of air masses were in coastal region of Thailand and the boarder region of Myanmar and China. The air masses were arriving at several divisions in different seasons from different distances and directions owing to the variations of wind velocities and wind directions. These studies become important and useful to proceed about climate change in Bangladesh. However, more and more studies are required to understand about atmospheric aerosol properties and their climate impacts.

  12. Temporal and spatial paleoproductivity patterns associated with Eastern Mediterranean sapropels: paleoceanographic significance.

    NASA Astrophysics Data System (ADS)

    Gallego-Torres, D.; Martinez-Ruiz, F.; Meyers, P. A.; Paytan, A.; Jimenez-Espejo, F. J.; Ortega-Huertas, M.

    2007-12-01

    Deposition of Eastern Mediterranean sapropels has been discussed in terms of enhanced primary productivity and/or preferential preservation due to anoxic conditions in the deep basin. However, formation of these organic enriched layers is not homogeneous across the basin and through time, and temporal and spatial patterns can be observed in organic carbon concentrations and depositional conditions. We used a transect of ODP sites in the Eastern Mediterranean for the study of such variations, covering the area of major influence of the European continent and incoming waters from the Western Mediterranean basin (Ionian basin, Site 964), a region of influence of the Nile River (Levantine basin, Site 967), the central region of the basin with minor continental influence (Mediterranean Ridge, Site 969), and shallower bathymetries (Eratosthenes Seamount, Site 966). A set of paleoproductivity related proxies has been applied in order to reconstruct the paleoceanographic conditions that led to the formation of sapropels. As a whole, sapropel formation corresponds to wetter periods occurring during precessional minima and appears associated to increased productivity, evidenced by Ba/Al, and TOC-Ba mass accumulation rates maxima. ?13C data indicate intensified carbon fixation during organic carbon entrapment in sediment, where as low ?15N values provide evidence of nitrogen fixation through cyanobacteria activity as a source of increased primary and export productivity. This overwhelming export productivity led to the depletion of deep water dissolved oxygen, thus improving organic matter preservation. The above mentioned proxies show that sapropels represent periods of high productivity in an otherwise oligotrophic basin. This productivity was initiated and sustained by a change in bacterial community to nitrogen-fixing organism favored by intensified continental drainage and nutrient input. In agreement to this observation, sapropel onset generally occurred earlier in the Levantine basin, directly influenced by variations in the Nile River discharge, and progressively spread toward the western part of the basin. Thus, this change in paleoceanographic conditions is ultimately climatically driven and the evolution of the regional climate affects the intensity of the sapropel formation for the last 3 My. Intensified productivity and enhanced preservation is observed during sapropel deposition from the middle Pliocene until the lower Pleistocene. Productivity maxima occur during the late Pleistocene, coinciding with highest recorded sedimentary rate, and a relatively weak increase is observed during the deposition of the Holocene sapropel. This pattern implies that the rates of deep-water ventilation and of continental erosion generally increased in the eastern Mediterranean region as climate cooled since the mid-Pliocene.

  13. Temporal patterns of nitrogen leakage from mid-Appalachian forested watersheds: Role of insect defoliation

    NASA Astrophysics Data System (ADS)

    Eshleman, Keith N.; Morgan, Raymond P.; Webb, James R.; Deviney, Frank A.; Galloway, James N.

    1998-08-01

    Fluxes of dissolved nitrogen (N) as nitrate from forested watersheds in the mid-Appalachian region have important water quality ramifications for small acid-sensitive streams and for downstream receiving waters such as the Chesapeake Bay. Previous studies of N leakage have suggested that annual dissolved N fluxes from small watersheds can vary by several orders of magnitude and may be increasing as second-growth forests gradually become N saturated from the accrual of atmospheric N loadings. In this study, we examined the temporal (intra-annual and interannual) variability in dissolved nitrate fluxes from five small (area < 15 km2) forested watersheds in the mid-Appalachian region from 1988 to 1995. At all sites, nitrate concentrations were observed to increase dramatically during storm flow events, with nitric acid contributing significantly to depressions in pH and acid-neutralizing capacity; annual nitrate fluxes were dominated by high-discharge periods. Interannually, the fluxes at each site varied by 1-2 orders of magnitude, but the patterns of N leakage displayed considerable synchrony with outbreaks of gypsy moth caterpillar defoliation that began in the late 1980s and early 1990s in this region. N leakage from forested watersheds apparently lagged the initial defoliation by several months to perhaps a year or more. Defoliation outbreaks by the gypsy moth caterpillar (or other herbivorous pests) thus provide an alternative explanation of N leakage from forest ecosystems. Poorly documented insect defoliations, rather than premature N saturation of intact forest ecosystems, need to be considered as a possible explanation of N leakage from forested watersheds in the mid-Appalachian region and elsewhere.

  14. Spatial and temporal patterns of dissolved organic matter optical properties across large rivers in Africa

    NASA Astrophysics Data System (ADS)

    Lambert, Thibault; Darchambeau, François; Vieira Borges, Alberto; Alhou, Bassirou; Mbega, Jean-Daniel; Teodoru, Cristian; Marwick, Trent Richard; Bouillon, Steven

    2014-05-01

    Tropical rivers have disproportionally high carbon transport and outgassing compared to temperate and Arctic rivers. Yet the cycling of dissolved organic matter (DOM) within these systems is still poorly studied with the exception of the Amazon basin. The chromophoric or colored dissolved organic matter (CDOM) is the fraction of DOM that absorbs ultraviolet and visible light. As the biochemical nature of DOM (and CDOM) defines its optical properties, optical measurements are particularly useful to assess the composition of DOM in freshwater and hence can be applied as proxies for assessments of DOM sources and its biogeochemical role. However, less is known on how specific optical characteristics can be applied as proxies and how these proxies vary from one system to another. In this study we compared concentrations and stable isotopic signature of dissolved organic carbon with optical properties of DOM from diverse tropical river systems across the African continent including the Congo basin, the Zambezi basin, the Ogooué basin and the Niger basin. These major rivers of the African continent were monitored for long period (from 1-3 years) at biweekly frequency. This large dataset allowed us to compare the spatial and temporal patterns of DOM quality along various environmental gradients, including hydrology, river size, terrestrial vegetation and connectivity to terrestrial inputs. The optical proxies presented and discussed in this study include absorption coefficients a(?) at different wavelength (254, 300, 350 and 440 nm), spectral slopes (S275-295and S350-400), the spectral slope ratio (SR=S275-295:S350-400) and the a(250):a(365) ratio.

  15. Analysis of Spatio-Temporal Patterns of Leaf Area Index in Different Forest Types of India Using High Temporal Remote Sensing Data

    NASA Astrophysics Data System (ADS)

    Chhabra, A.; Panigrahy, S.

    2011-08-01

    Knowledge of temporal variations of Leaf Area Index (LAI) aids in understanding the climate-vegetation interaction of different vegetative systems. This information is amenable from high temporal remote sensing data. India has around 78.37 million hectare, accounting for 23.84% of the geographic area of the country under forest/tree cover. India has a diverse set of vegetation types ranging from tropical evergreen to dry deciduous. We present a detailed spatio-temporal and inter-seasonal analysis of LAI patterns in different forest types of India using MODIS 8-day composites global LAI/fPAR product for the year 2005 at 1-km spatial resolution. A forest cover mask was generated using SPOT 1-km landuse/landcover classification over the Indian region. The range of estimated LAI varied from 0.1-6.9 among the different forest types. Maximum LAI was observed in tropical evergreen forests in North-Eastern region and Western Ghats. Low LAI was observed in Central Indian region due to predominance of dry deciduous forests. The spatial patterns of seasonal variations detected that for most of the forest types, the peak LAI values were observed during September and October months of the autumn season in contrast to minimum LAI during summer season. The mean LAI and standard deviation for each 8-day LAI composite were also computed and mean monthly LAI profiles were derived for each forest type classified on the basis of their geographical locations. These results are useful indicators for detailed understanding of phenological sequence and may also serve as important inputs for deriving bioclimatic indices for different forest types of India.

  16. Temporal stability of estimated soil water flux patterns across agricultural fields

    Technology Transfer Automated Retrieval System (TEKTRAN)

    When a field or a small watershed is repeatedly surveyed for soil water content, sites often can be spotted where soil is consistently wetter or consistently dryer than average across the study area. This phenomenon has been called time stability, temporal stability, temporal persistence, or rank st...

  17. Understanding spatio-temporal mobility patterns for seniors, child/student and adult using smart card data

    NASA Astrophysics Data System (ADS)

    Huang, X.; Tan, J.

    2014-11-01

    Commutes in urban areas create interesting travel patterns that are often stored in regional transportation databases. These patterns can vary based on the day of the week, the time of the day, and commuter type. This study proposes methods to detect underlying spatio-temporal variability among three groups of commuters (senior citizens, child/students, and adults) using data mining and spatial analytics. Data from over 36 million individual trip records collected over one week (March 2012) on the Singapore bus and Mass Rapid Transit (MRT) system by the fare collection system were used. Analyses of such data are important for transportation and landuse designers and contribute to a better understanding of urban dynamics. Specifically, descriptive statistics, network analysis, and spatial analysis methods are presented. Descriptive variables were proposed such as density and duration to detect temporal features of people. A directed weighted graph G ≡ (N , L, W) was defined to analyze the global network properties of every pair of the transportation link in the city during an average workday for all three categories. Besides, spatial interpolation and spatial statistic tools were used to transform the discrete network nodes into structured human movement landscape to understand the role of transportation systems in urban areas. The travel behaviour of the three categories follows a certain degree of temporal and spatial universality but also displays unique patterns within their own specialties. Each category is characterized by their different peak hours, commute distances, and specific locations for travel on weekdays.

  18. Spatio-temporal distribution patterns of the epibenthic community in the coastal waters of Suriname

    NASA Astrophysics Data System (ADS)

    Willems, Tomas; De Backer, Annelies; Wan Tong You, Kenneth; Vincx, Magda; Hostens, Kris

    2015-10-01

    This study aimed to characterize the spatio-temporal patterns of the epibenthic community in the coastal waters of Suriname. Data were collected on a (bi)monthly basis in 2012-2013 at 15 locations in the shallow (<40 m) coastal area, revealing three spatially distinct species assemblages, related to clear gradients in some environmental parameters. A species-poor coastal assemblage was discerned within the muddy, turbid-water zone (6-20 m depth), dominated by Atlantic seabob shrimp Xiphopenaeus kroyeri (Crustacea: Penaeoidea). Near the 30 m isobath, sediments were much coarser (median grain size on average 345±103 ?m vs. 128±53 ?m in the coastal assemblage) and water transparency was much higher (on average 7.6±3.5 m vs. 2.4±2.1 m in the coastal assemblage). In this zone, a diverse offshore assemblage was found, characterized by brittle stars (mainly Ophioderma brevispina and Ophiolepis elegans) and a variety of crabs, sea stars and hermit crabs. In between both zones, a transition assemblage was noted, with epibenthic species typically found in either the coastal or offshore assemblages, but mainly characterized by the absence of X. kroyeri. Although the epibenthic community was primarily structured in an on-offshore gradient related to depth, sediment grain size and sediment total organic carbon content, a longitudinal (west-east) gradient was apparent as well. The zones in the eastern part of the Suriname coastal shelf seemed to be more widely stretched along the on-offshore gradient. Although clear seasonal differences were noted in the environmental characteristics (e.g. dry vs. rainy season), this was not reflected in the epibenthic community structure. X. kroyeri reached very high densities (up to 1383 ind 1000 m-²) in the shallow coastal waters of Suriname. As X. kroyeri is increasingly exploited throughout its range, the current study provides the ecological context for its presence and abundance, which is crucial for an ecosystem approach and the sustainable management of this commercially important species and its habitat.

  19. Spatial-temporal excess mortality patterns of the 1918–1919 influenza pandemic in Spain

    PubMed Central

    2014-01-01

    Background The impact of socio-demographic factors and baseline health on the mortality burden of seasonal and pandemic influenza remains debated. Here we analyzed the spatial-temporal mortality patterns of the 1918 influenza pandemic in Spain, one of the countries of Europe that experienced the highest mortality burden. Methods We analyzed monthly death rates from respiratory diseases and all-causes across 49 provinces of Spain, including the Canary and Balearic Islands, during the period January-1915 to June-1919. We estimated the influenza-related excess death rates and risk of death relative to baseline mortality by pandemic wave and province. We then explored the association between pandemic excess mortality rates and health and socio-demographic factors, which included population size and age structure, population density, infant mortality rates, baseline death rates, and urbanization. Results Our analysis revealed high geographic heterogeneity in pandemic mortality impact. We identified 3 pandemic waves of varying timing and intensity covering the period from Jan-1918 to Jun-1919, with the highest pandemic-related excess mortality rates occurring during the months of October-November 1918 across all Spanish provinces. Cumulative excess mortality rates followed a south–north gradient after controlling for demographic factors, with the North experiencing highest excess mortality rates. A model that included latitude, population density, and the proportion of children living in provinces explained about 40% of the geographic variability in cumulative excess death rates during 1918–19, but different factors explained mortality variation in each wave. Conclusions A substantial fraction of the variability in excess mortality rates across Spanish provinces remained unexplained, which suggests that other unidentified factors such as comorbidities, climate and background immunity may have affected the 1918–19 pandemic mortality rates. Further archeo-epidemiological research should concentrate on identifying settings with combined availability of local historical mortality records and information on the prevalence of underlying risk factors, or patient-level clinical data, to further clarify the drivers of 1918 pandemic influenza mortality. PMID:24996457

  20. Spatio-temporal Patterns and Landscape-Associated Risk of Buruli Ulcer in Akonolinga, Cameroon

    PubMed Central

    Landier, Jordi; Gaudart, Jean; Carolan, Kevin; Lo Seen, Danny; Guégan, Jean-François; Eyangoh, Sara; Fontanet, Arnaud; Texier, Gaëtan

    2014-01-01

    Background Buruli ulcer (BU) is an extensively damaging skin infection caused by Mycobacterium ulcerans, whose transmission mode is still unknown. The focal distribution of BU and the absence of interpersonal transmission suggest a major role of environmental factors, which remain unidentified. This study provides the first description of the spatio-temporal variations of BU in an endemic African region, in Akonolinga, Cameroon. We quantify landscape-associated risk of BU, and reveal local patterns of endemicity. Methodology/Principal Findings From January 2002 to May 2012, 787 new BU cases were recorded in 154 villages of the district of Akonolinga. Incidence per village ranged from 0 (n?=?59 villages) to 10.4 cases/1000 person.years (py); median incidence was 0.4 cases/1,000py. Villages neighbouring the Nyong River flood plain near Akonolinga town were identified as the highest risk zone using the SPODT algorithm. We found a decreasing risk with increasing distance to the Nyong and identified 4 time phases with changes in spatial distribution. We classified the villages into 8 groups according to landscape characteristics using principal component analysis and hierarchical clustering. We estimated the incidence ratio (IR) associated with each landscape using a generalised linear model. BU risk was highest in landscapes with abundant wetlands, especially cultivated ones (IR?=?15.7, 95% confidence interval [95%CI]?=?15.7[4.2–59.2]), and lowest in reference landscape where primary and secondary forest cover was abundant. In intermediate-risk landscapes, risk decreased with agriculture pressure (from IR[95%CI]?=?7.9[2.2–28.8] to 2.0[0.6–6.6]). We identified landscapes where endemicity was stable and landscapes where incidence increased with time. Conclusion/Significance Our study on the largest series of BU cases recorded in a single endemic region illustrates the local evolution of BU and identifies the Nyong River as the major driver of BU incidence. Local differences along the river are explained by wetland abundance and human modification of the environment. PMID:25188464

  1. Analyzing spatial-temporal patterns of motor vehicle crashes using GIS: a case study in Dallas 

    E-print Network

    Lu, Bing

    2003-01-01

    This paper uses GIS to analyze the characteristics of temporal and spatial distributions of motor vehicle crashes. These characteristics include that traffic accidents are most likely to occur in the afternoon "rush hour" ...

  2. Unsupervised Hebbian learning by recurrent multilayer neural networks for temporal hierarchical pattern recognition

    E-print Network

    Rathinam, Muruhan

    ­unsupervised learning; learning machine; recurrent neural network; Hebbian learning; multilayer neural networkUnsupervised Hebbian learning by recurrent multilayer neural networks for temporal hierarchical learning are two essential features of biological neural networks. An arti...cial recurrent multilayer

  3. Numerical Study of the Complex Temporal Pattern of Spontaneous Oscillation in Bullfrog Saccular Hair Cells

    NASA Astrophysics Data System (ADS)

    Roongthumskul, Yuttana; Fredrickson-Hemsing, Lea; Kao, Albert; Bozovic, Dolores

    2011-11-01

    Hair bundles of the bullfrog sacculus display spontaneous oscillations that show complex temporal profiles. Quiescent intervals are typically interspersed with oscillations, analogous to bursting behavior observed in neural systems. By introducing slow calcium dynamics into the theoretical model of bundle mechanics, we reproduce numerically the multi-mode oscillations and explore the effects of internal parameters on the temporal profiles and the frequency tuning of their linear response functions. We also study the effects of mechanical overstimulation on the oscillatory behavior.

  4. Spatial and temporal patterns of CO[subscript 2] and CH[subscript 4] fluxes in China's croplands in response to multifactor environmental changes

    E-print Network

    REN, WEI

    The spatial and temporal patterns of CO[subscript 2] and CH[subscript 4] fluxes in China's croplands were investigated and attributed to multifactor environmental changes using the agricultural module of the Dynamic Land ...

  5. Restoration of Central Programmed Movement Pattern by Temporal Electrical Stimulation-Assisted Training in Patients with Spinal Cerebellar Atrophy

    PubMed Central

    Huang, Ying-Zu; Chang, Yao-Shun; Hsu, Miao-Ju; Wong, Alice M. K.; Chang, Ya-Ju

    2015-01-01

    Disrupted triphasic electromyography (EMG) patterns of agonist and antagonist muscle pairs during fast goal-directed movements have been found in patients with hypermetria. Since peripheral electrical stimulation (ES) and motor training may modulate motor cortical excitability through plasticity mechanisms, we aimed to investigate whether temporal ES-assisted movement training could influence premovement cortical excitability and alleviate hypermetria in patients with spinal cerebellar ataxia (SCA). The EMG of the agonist extensor carpi radialis muscle and antagonist flexor carpi radialis muscle, premovement motor evoked potentials (MEPs) of the flexor carpi radialis muscle, and the constant and variable errors of movements were assessed before and after 4 weeks of ES-assisted fast goal-directed wrist extension training in the training group and of general health education in the control group. After training, the premovement MEPs of the antagonist muscle were facilitated at 50?ms before the onset of movement. In addition, the EMG onset latency of the antagonist muscle shifted earlier and the constant error decreased significantly. In summary, temporal ES-assisted training alleviated hypermetria by restoring antagonist premovement and temporal triphasic EMG patterns in SCA patients. This technique may be applied to treat hypermetria in cerebellar disorders. (This trial is registered with NCT01983670.) PMID:26417459

  6. Seasonal suspended particles distribution patterns in Western South Yellow Sea based on Acoustic Doppler Current Profiler observation

    NASA Astrophysics Data System (ADS)

    Li, Jianchao; Li, Guangxue; Xu, Jishang; Qiao, Lulu; Dong, Ping; Ding, Dong; Liu, Shidong; Sun, Pingkuo

    2015-06-01

    An Acoustic Doppler Current Profiler (ADCP) observation site was set up in the Western South Yellow Sea from 2012 to 2013 to study the local suspended particle matters (SPM) distribution pattern. The SPM concentration could be semi-quantitatively represented by backscatter intensity (Sv), converted by the echo intensity (EI) of ADCP. Results show two types of SPM in the water column: the quasi-biological SPM and quasi-mineral SPM. The quasi-biological SPM mainly exists in summer half year and is concentrated above the thermocline. It has periodically diurnal variations with high concentration at night and low concentration in the daytime. The quasi-mineral SPM is located in lower part of the water column, with similar relation to monthly tidal current variation all year round. However, the daily quasi-mineral SPM distribution patterns vary between summer and winter half year. The sunlight is thought to be the origin factor leading to the diurnally vertical motion of the biological features, which might cause the diurnal Sv variation. Unlike in winter half year when tidal current is relatively single driving force of the monthly SPM pattern, the high speed current near the thermocline is also responsible for the concentration of quasi-mineral SPM in summer half year. The sediment input difference between summer and winter half year contribute to the varied daily variation of quasi-mineral SPM with re-suspended SPM in winter and sediments from Yellow Sea Mud Area (YSMA) in summer. The seasonal variations in hydrodynamics, water structure and heavy-wind incidents are the primary factors influencing the differential seasonal SPM distribution patterns.

  7. Complex temporal and spatial patterns in nonequilibrium processes. Final report, December 1, 1987--November 30, 1992

    SciTech Connect

    Not Available

    1992-12-31

    Dynamical systems methods have been used to study bifurcations and pattern formation in nonequilibrium systems. Accomplishments during this period include: information-theoretic methods for analyzing chaos, chemical reactors for studying sustained reaction-diffusion patterns, a reactor exploiting pattern formation to extract short- lived intermediate species, observation of bifurcation from periodic to quasiperiodic rotating chemical spiral patterns, observation of a Turing bifurcation (transition from uniform state to a stationary chemical pattern), method for extracting noise strength in ramped convection, self-similar fractal structure of Zn clusters in electrodeposition, and dynamical instability in crack propagation.

  8. Temporal motifs reveal collaboration patterns in online task-oriented networks

    NASA Astrophysics Data System (ADS)

    Xuan, Qi; Fang, Huiting; Fu, Chenbo; Filkov, Vladimir

    2015-05-01

    Real networks feature layers of interactions and complexity. In them, different types of nodes can interact with each other via a variety of events. Examples of this complexity are task-oriented social networks (TOSNs), where teams of people share tasks towards creating a quality artifact, such as academic research papers or software development in commercial or open source environments. Accomplishing those tasks involves both work, e.g., writing the papers or code, and communication, to discuss and coordinate. Taking into account the different types of activities and how they alternate over time can result in much more precise understanding of the TOSNs behaviors and outcomes. That calls for modeling techniques that can accommodate both node and link heterogeneity as well as temporal change. In this paper, we report on methodology for finding temporal motifs in TOSNs, limited to a system of two people and an artifact. We apply the methods to publicly available data of TOSNs from 31 Open Source Software projects. We find that these temporal motifs are enriched in the observed data. When applied to software development outcome, temporal motifs reveal a distinct dependency between collaboration and communication in the code writing process. Moreover, we show that models based on temporal motifs can be used to more precisely relate both individual developer centrality and team cohesion to programmer productivity than models based on aggregated TOSNs.

  9. Temporal motifs reveal collaboration patterns in online task-oriented networks.

    PubMed

    Xuan, Qi; Fang, Huiting; Fu, Chenbo; Filkov, Vladimir

    2015-05-01

    Real networks feature layers of interactions and complexity. In them, different types of nodes can interact with each other via a variety of events. Examples of this complexity are task-oriented social networks (TOSNs), where teams of people share tasks towards creating a quality artifact, such as academic research papers or software development in commercial or open source environments. Accomplishing those tasks involves both work, e.g., writing the papers or code, and communication, to discuss and coordinate. Taking into account the different types of activities and how they alternate over time can result in much more precise understanding of the TOSNs behaviors and outcomes. That calls for modeling techniques that can accommodate both node and link heterogeneity as well as temporal change. In this paper, we report on methodology for finding temporal motifs in TOSNs, limited to a system of two people and an artifact. We apply the methods to publicly available data of TOSNs from 31 Open Source Software projects. We find that these temporal motifs are enriched in the observed data. When applied to software development outcome, temporal motifs reveal a distinct dependency between collaboration and communication in the code writing process. Moreover, we show that models based on temporal motifs can be used to more precisely relate both individual developer centrality and team cohesion to programmer productivity than models based on aggregated TOSNs. PMID:26066218

  10. Spatial and temporal patterns of endocrine active chemicals in small streams indicate differential exposure to aquatic organisms

    USGS Publications Warehouse

    Lee, K.E.; Barber, L.B.; Schoenfuss, H.L.

    2014-01-01

    Alkylphenolic chemicals (APCs) and hormones were measured six times from February through October 2007 in three Minnesota streams receiving wastewater to identify spatial and temporal patterns in concentrations and in estrogen equivalency. Fish were collected once during the study to evaluate endpoints indicative of endocrine disruption. The most commonly detected APCs were 4-tert-octylphenol and 4-nonylphenol and the most commonly detected hormones were estrone and androstenedione. Chemical concentrations were greatest for nonylphenol ethoxycarboxylates (NPECs) (5,000-140,000 ng/l), followed by 4-nonlylphenol and 4-nonylphenolethoxylates (50-880 ng/l), 4-tert-octylphenol and 4-tert-octylphenolethoxylates with concentrations as great as 130 ng/l, and hormones (0.1-54 ng/l). Patterns in chemicals and estrogen equivalency indicated that wastewater effluent is a pathway of APCs and hormones to downstream locations in this study. However, upstream contributions can be equally or more important indicating alternative sources. This study indicates that aquatic organisms experience both spatially and temporally variable exposures in the number of compounds, total concentrations, and estrogenicity. This variability was evident in fish collected from the three rivers as no clear upstream to downstream pattern of endocrine disruption endpoints emerged.

  11. Spatial and temporal patterns of chronic wasting disease: Fine-scale mapping of a wildlife epidemic in Wisconsin

    USGS Publications Warehouse

    Osnas, E.E.; Heisey, D.M.; Rolley, R.E.; Samuel, M.D.

    2009-01-01

    Emerging infectious diseases threaten wildlife populations and human health. Understanding the spatial distributions of these new diseases is important for disease management and policy makers; however, the data are complicated by heterogeneities across host classes, sampling variance, sampling biases, and the space-time epidemic process. Ignoring these issues can lead to false conclusions or obscure important patterns in the data, such as spatial variation in disease prevalence. Here, we applied hierarchical Bayesian disease mapping methods to account for risk factors and to estimate spatial and temporal patterns of infection by chronic wasting disease (CWD) in white-tailed deer (Odocoileus virginianus) of Wisconsin, USA. We found significant heterogeneities for infection due to age, sex, and spatial location. Infection probability increased with age for all young deer, increased with age faster for young males, and then declined for some older animals, as expected from disease-associated mortality and age-related changes in infection risk. We found that disease prevalence was clustered in a central location, as expected under a simple spatial epidemic process where disease prevalence should increase with time and expand spatially. However, we could not detect any consistent temporal or spatiotemporal trends in CWD prevalence. Estimates of the temporal trend indicated that prevalence may have decreased or increased with nearly equal posterior probability, and the model without temporal or spatiotemporal effects was nearly equivalent to models with these effects based on deviance information criteria. For maximum interpretability of the role of location as a disease risk factor, we used the technique of direct standardization for prevalence mapping, which we develop and describe. These mapping results allow disease management actions to be employed with reference to the estimated spatial distribution of the disease and to those host classes most at risk. Future wildlife epidemiology studies should employ hierarchical Bayesian methods to smooth estimated quantities across space and time, account for heterogeneities, and then report disease rates based on an appropriate standardization. ?? 2009 by the Ecological Society of America.

  12. Spatial and temporal patterns of porcine reproductive and respiratory syndrome virus (PRRSV) genotypes in Ontario, Canada, 2004–2007

    PubMed Central

    2014-01-01

    Background The spread of PRRSV among pig herds has been investigated experimentally, but few observational studies have investigated this subject. Because PRRSV is endemic and live modified vaccines are used in Ontario, the spatial and temporal distributions of 6 PRRSV genotypes were investigated in the province during the period from 2004–2007. The purpose was to find evidence of spread of PRRSV genotypes and determine if spread could be attributed to supplier or ownership connections between herds. Sequence information from PRRSV ORF5 and related source-herd demographic information were obtained from diagnostic submissions to the Animal Health Laboratory, University of Guelph. Results A spatial cluster that could not be attributed to supplier or ownership connections among herds in the cluster was detected for RFLP type 1-3-4. Because of genetic dissimilarity among members of the cluster, it was considered to be a result of past spread of the RFLP type. A spatio-temporal cluster detected for RFLP type 1-18-4 was attributed to a shared gilt supplier among the herds in the cluster. Significant spatio-temporal patterns detected for RFLP type 2-5-2, which is considered to be a vaccine-type virus were most likely due to grouping of herds in an ownership that used the corresponding vaccine. Clustering within herd-ownership was a risk factor for presence of five of the six genotypes investigated in the present study. Conclusions Although the literature indicates that PRRSV can spread via aerosol between pig herds, the present study found no strong evidence of this occurring in Ontario. The evidence pointed toward transmission of PRRSV occurring in this population by common sources of animals or similarity of herd ownership, which is a proxy measure for other connections between herds. It is also apparent that the recognition and testing of these connections between herds is a necessary part of interpreting spatio-temporal patterns of PRRSV genotypes. PMID:24708804

  13. Spatial and temporal patterns of chronic wasting disease: fine-scale mapping of a wildlife epidemic in Wisconsin.

    PubMed

    Osnas, Erik E; Heisey, Dennis M; Rolley, Robert E; Samuel, Michael D

    2009-07-01

    Emerging infectious diseases threaten wildlife populations and human health. Understanding the spatial distributions of these new diseases is important for disease management and policy makers; however, the data are complicated by heterogeneities across host classes, sampling variance, sampling biases, and the space-time epidemic process. Ignoring these issues can lead to false conclusions or obscure important patterns in the data, such as spatial variation in disease prevalence. Here, we applied hierarchical Bayesian disease mapping methods to account for risk factors and to estimate spatial and temporal patterns of infection by chronic wasting disease (CWD) in white-tailed deer (Odocoileus virginianus) of Wisconsin, U.S.A. We found significant heterogeneities for infection due to age, sex, and spatial location. Infection probability increased with age for all young deer, increased with age faster for young males, and then declined for some older animals, as expected from disease-associated mortality and age-related changes in infection risk. We found that disease prevalence was clustered in a central location, as expected under a simple spatial epidemic process where disease prevalence should increase with time and expand spatially. However, we could not detect any consistent temporal or spatiotemporal trends in CWD prevalence. Estimates of the temporal trend indicated that prevalence may have decreased or increased with nearly equal posterior probability, and the model without temporal or spatiotemporal effects was nearly equivalent to models with these effects based on deviance information criteria. For maximum interpretability of the role of location as a disease risk factor, we used the technique of direct standardization for prevalence mapping, which we develop and describe. These mapping results allow disease management actions to be employed with reference to the estimated spatial distribution of the disease and to those host classes most at risk. Future wildlife epidemiology studies should employ hierarchical Bayesian methods to smooth estimated quantities across space and time, account for heterogeneities, and then report disease rates based on an appropriate standardization. PMID:19688937

  14. Temporal Patterns of Ant Diversity across a Mountain with Climatically Contrasting Aspects in the Tropics of Africa

    PubMed Central

    Munyai, Thinandavha Caswell; Foord, Stefan Hendrik

    2015-01-01

    Factors that drive species richness over space and time are still poorly understood and are often context specific. Identifying these drivers for ant diversity has become particularly relevant within the context of contemporary global change events. We report on a long-term bi-annual (wet and dry seasons), standardized sampling of epigeal ants over a five year period on the mesic and arid aspects of an inselberg (Soutpansberg Mountain Range) in the tropics of Africa. We detail seasonal, annual and long-term trends of species density, test the relative contribution of geometric constraints, energy, available area, climate, local environmental variables, time, and space in explaining ant species density patterns through Generalized Linear Mixed Models (GLMM) where replicates were included as random factors to account for temporal pseudo-replication. Seasonal patterns were very variable and we found evidence of decreased seasonal variation in species density with increased elevation. The extent and significance of a decrease in species density with increased elevation varied with season. Annual patterns point to an increase in ant diversity over time. Ant density patterns were positively correlated with mean monthly temperature but geometric constraints dominated model performance while soil characteristics were minor correlates. These drivers and correlates accounted for all the spatio-temporal variability in the database. Ant diversity was therefore mainly determined by geometric constraints and temperature while soil characteristics (clay and carbon content) accounted for smaller but significant amounts of variation. This study documents the role of season, elevation and their interaction in affecting ant species densities while highlighting the importance of neutral processes and temperature in driving these patterns. PMID:25774670

  15. Temporal patterns of ant diversity across a mountain with climatically contrasting aspects in the tropics of Africa.

    PubMed

    Munyai, Thinandavha Caswell; Foord, Stefan Hendrik

    2015-01-01

    Factors that drive species richness over space and time are still poorly understood and are often context specific. Identifying these drivers for ant diversity has become particularly relevant within the context of contemporary global change events. We report on a long-term bi-annual (wet and dry seasons), standardized sampling of epigeal ants over a five year period on the mesic and arid aspects of an inselberg (Soutpansberg Mountain Range) in the tropics of Africa. We detail seasonal, annual and long-term trends of species density, test the relative contribution of geometric constraints, energy, available area, climate, local environmental variables, time, and space in explaining ant species density patterns through Generalized Linear Mixed Models (GLMM) where replicates were included as random factors to account for temporal pseudo-replication. Seasonal patterns were very variable and we found evidence of decreased seasonal variation in species density with increased elevation. The extent and significance of a decrease in species density with increased elevation varied with season. Annual patterns point to an increase in ant diversity over time. Ant density patterns were positively correlated with mean monthly temperature but geometric constraints dominated model performance while soil characteristics were minor correlates. These drivers and correlates accounted for all the spatio-temporal variability in the database. Ant diversity was therefore mainly determined by geometric constraints and temperature while soil characteristics (clay and carbon content) accounted for smaller but significant amounts of variation. This study documents the role of season, elevation and their interaction in affecting ant species densities while highlighting the importance of neutral processes and temperature in driving these patterns. PMID:25774670

  16. Temporal stability of soil water contents as affected by weather patterns: a simulation study.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Temporal stability of soil water content (TS SWC) is a natural phenomenon that recently attracts attention and finds multiple applications. Large variations in the interannual and interseasonal TS SWC have been encountered among locations studied by various authors. The objective of this work was ...

  17. TEMPORAL GENE INDUCTION PATTERNS IN SHEEPSHEAD MINNOWS EXPOSED TO 17-ESTRADIOL

    EPA Science Inventory

    Gene arrays provide a powerful method to examine changes in gene expression in fish due to chemical exposures in the environment. In this study, we expanded an existing gene array for sheepshead minnows (Cyprinodon variegatus) (SHM) and used it to examine temporal changes in gene...

  18. Detecting Temporal Pattern and Cluster Changes in Social Networks: A study focusing UK

    E-print Network

    Coenen, Frans

    as a social network with additional spatial and temporal information. The paper firstly proposes a trend** *Department of Computer Science, University of Liverpool, L69 3BX Liverpool +44 (0)151 795 4275 puteri@liverpool.ac.uk frans@liverpool.ac.uk **School of Veterinary Science, University of Liverpool and National Center

  19. SPATIAL AND TEMPORAL PATTERNS IN MERCURY CONTAMINATION IN SEDIMENTS OF THE LAURENTIAL GREAT LAKES

    EPA Science Inventory

    Data from recent sediment surveys have been collated and mapped in order to determine the spatial distribution of mercury in sediments across the entire Great Lakes basin. Information from historical surveys has also been collated in order to evaluate temporal trends. Lake Huron ...

  20. Temporal stability of soil water content and soil water flux patterns across agricultural fields

    Technology Transfer Automated Retrieval System (TEKTRAN)

    When an agricultural field is repeatedly surveyed for soil water content, sites often can be spotted where soil is consistently wetter or consistently dryer than average across the study area. Temporal stability presents significant interest for upscaling observed soil water content, improving soil ...

  1. Clusters of Temporal Discordances Reveal Distinct Embryonic Patterning Mechanisms in Drosophila and Anopheles

    PubMed Central

    Papatsenko, Dmitri; Levine, Michael; Goltsev, Yury

    2011-01-01

    Evolutionary innovations can be driven by spatial and temporal changes in gene expression. Several such differences have been documented in the embryos of lower and higher Diptera. One example is the reduction of the ancient extraembryonic envelope composed of amnion and serosa as seen in mosquitoes to the single amnioserosa of fruit flies. We used transcriptional datasets collected during the embryonic development of the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae, to search for whole-genome changes in gene expression underlying differences in their respective embryonic morphologies. We found that many orthologous gene pairs could be clustered based on the presence of coincident discordances in their temporal expression profiles. One such cluster contained genes expressed specifically in the mosquito serosa. As shown previously, this cluster is redeployed later in development at the time of cuticle synthesis. In addition, there is a striking difference in the temporal expression of a subset of maternal genes. Specifically, maternal transcripts that exhibit a sharp reduction at the time of the maternal-zygotic transition in Drosophila display sustained expression in the Anopheles embryo. We propose that gene clustering by local temporal discordance can be used for the de novo identification of the gene batteries underlying morphological diversity. PMID:21283609

  2. Investigating univariate temporal patterns for intrinsic connectivity networks based on complexity and low-frequency oscillation: a test-retest reliability study.

    PubMed

    Wang, X; Jiao, Y; Tang, T; Wang, H; Lu, Z

    2013-12-19

    Intrinsic connectivity networks (ICNs) are composed of spatial components and time courses. The spatial components of ICNs were discovered with moderate-to-high reliability. So far as we know, few studies focused on the reliability of the temporal patterns for ICNs based their individual time courses. The goals of this study were twofold: to investigate the test-retest reliability of temporal patterns for ICNs, and to analyze these informative univariate metrics. Additionally, a correlation analysis was performed to enhance interpretability. Our study included three datasets: (a) short- and long-term scans, (b) multi-band echo-planar imaging (mEPI), and (c) eyes open or closed. Using dual regression, we obtained the time courses of ICNs for each subject. To produce temporal patterns for ICNs, we applied two categories of univariate metrics: network-wise complexity and network-wise low-frequency oscillation. Furthermore, we validated the test-retest reliability for each metric. The network-wise temporal patterns for most ICNs (especially for default mode network, DMN) exhibited moderate-to-high reliability and reproducibility under different scan conditions. Network-wise complexity for DMN exhibited fair reliability (ICC<0.5) based on eyes-closed sessions. Specially, our results supported that mEPI could be a useful method with high reliability and reproducibility. In addition, these temporal patterns were with physiological meanings, and certain temporal patterns were correlated to the node strength of the corresponding ICN. Overall, network-wise temporal patterns of ICNs were reliable and informative and could be complementary to spatial patterns of ICNs for further study. PMID:24042040

  3. Passive Acoustic Monitoring the Diel, Lunar, Seasonal and Tidal Patterns in the Biosonar Activity of the Indo-Pacific Humpback Dolphins (Sousa chinensis) in the Pearl River Estuary, China

    PubMed Central

    Wang, Zhi-Tao; Nachtigall, Paul E.; Akamatsu, Tomonari; Wang, Ke-Xiong; Wu, Yu-Ping; Liu, Jian-Chang; Duan, Guo-Qin; Cao, Han-Jiang; Wang, Ding

    2015-01-01

    A growing demand for sustainable energy has led to an increase in construction of offshore windfarms. Guishan windmill farm will be constructed in the Pearl River Estuary, China, which sustains the world’s largest known population of Indo-Pacific humpback dolphins (Sousa chinensis). Dolphin conservation is an urgent issue in this region. By using passive acoustic monitoring, a baseline distribution of data on this species in the Pearl River Estuary during pre-construction period had been collected. Dolphin biosonar detection and its diel, lunar, seasonal and tidal patterns were examined using a Generalized Linear Model. Significant higher echolocation detections at night than during the day, in winter-spring than in summer-autumn, at high tide than at flood tide were recognized. Significant higher echolocation detections during the new moon were recognized at night time. The diel, lunar and seasonal patterns for the echolocation encounter duration also significantly varied. These patterns could be due to the spatial-temporal variability of dolphin prey and illumination conditions. The baseline information will be useful for driving further effective action on the conservation of this species and in facilitating later assessments of the effects of the offshore windfarm on the dolphins by comparing the baseline to post construction and post mitigation efforts. PMID:26580966

  4. Passive Acoustic Monitoring the Diel, Lunar, Seasonal and Tidal Patterns in the Biosonar Activity of the Indo-Pacific Humpback Dolphins (Sousa chinensis) in the Pearl River Estuary, China.

    PubMed

    Wang, Zhi-Tao; Nachtigall, Paul E; Akamatsu, Tomonari; Wang, Ke-Xiong; Wu, Yu-Ping; Liu, Jian-Chang; Duan, Guo-Qin; Cao, Han-Jiang; Wang, Ding

    2015-01-01

    A growing demand for sustainable energy has led to an increase in construction of offshore windfarms. Guishan windmill farm will be constructed in the Pearl River Estuary, China, which sustains the world's largest known population of Indo-Pacific humpback dolphins (Sousa chinensis). Dolphin conservation is an urgent issue in this region. By using passive acoustic monitoring, a baseline distribution of data on this species in the Pearl River Estuary during pre-construction period had been collected. Dolphin biosonar detection and its diel, lunar, seasonal and tidal patterns were examined using a Generalized Linear Model. Significant higher echolocation detections at night than during the day, in winter-spring than in summer-autumn, at high tide than at flood tide were recognized. Significant higher echolocation detections during the new moon were recognized at night time. The diel, lunar and seasonal patterns for the echolocation encounter duration also significantly varied. These patterns could be due to the spatial-temporal variability of dolphin prey and illumination conditions. The baseline information will be useful for driving further effective action on the conservation of this species and in facilitating later assessments of the effects of the offshore windfarm on the dolphins by comparing the baseline to post construction and post mitigation efforts. PMID:26580966

  5. Temporal classification of Drosophila segmentation gene expression patterns by the multi-valued neural

    E-print Network

    Aizenberg, Igor

    the establishment of the body pattern over time in Drosophila embryos, we have developed automated methods for detecting the age of an embryo on the basis of knowledge about its gene expression patterns. In this paper of an embryo, fields of initially uniform cells become determined to follow diverse developmental pathways

  6. Complex temporal and spatial patterns in nonequilibrium processes. Progress report, December 1, 1987--November 30, 1992

    SciTech Connect

    Swinney, H.L.

    1992-10-01

    We have used dynamical systems methods to study and characterize bifurcations and pattern formation in a variety of nonequilibrium systems. In this paper we describe our work on dynamical systems, chemical oscillations and chaos, chemical spatial patterns, instabilities in fluid dynamics, electrodeposition clusters, the ballast resistor, and crack propagation.

  7. A Model-Based Analysis of Chemical and Temporal Patterns of Cuticular Hydrocarbons in Male Drosophila melanogaster

    PubMed Central

    Kent, Clement; Azanchi, Reza; Smith, Ben; Chu, Adrienne; Levine, Joel

    2007-01-01

    Drosophila Cuticular Hydrocarbons (CH) influence courtship behaviour, mating, aggregation, oviposition, and resistance to desiccation. We measured levels of 24 different CH compounds of individual male D. melanogaster hourly under a variety of environmental (LD/DD) conditions. Using a model-based analysis of CH variation, we developed an improved normalization method for CH data, and show that CH compounds have reproducible cyclic within-day temporal patterns of expression which differ between LD and DD conditions. Multivariate clustering of expression patterns identified 5 clusters of co-expressed compounds with common chemical characteristics. Turnover rate estimates suggest CH production may be a significant metabolic cost. Male cuticular hydrocarbon expression is a dynamic trait influenced by light and time of day; since abundant hydrocarbons affect male sexual behavior, males may present different pheromonal profiles at different times and under different conditions. PMID:17896002

  8. Complex temporal patterns in molecular dynamics: A direct measure of the phase-space exploration by the trajectory at macroscopic time scales

    E-print Network

    Nerukh, Dmitry

    Complex temporal patterns in molecular dynamics: A direct measure of the phase-space exploration how the trajectory explores the phase space and independent from the particular molecular signal used in liquids form complex patterns in the phase space. Because of the system's high dimensionality defined

  9. Temporal patterns in the upstream migration of European glass eels ( Anguilla anguilla) at the Couesnon estuarine dam

    NASA Astrophysics Data System (ADS)

    Laffaille, P.; Caraguel, J.-M.; Legault, A.

    2007-06-01

    The temporal migration patterns of European glass eel Anguilla anguilla at the Couesnon estuarine dam (Mont-Saint-Michel Bay, France) were examined in winter and spring 2004 and 2005. The dam which is located close to the river mouth constitutes a major obstacle for upstream-migrating glass eels. The migration was observed at different temporal scales, from within individual tides to complete tidal cycles between successive spring tides. The maximum number of glass eels arrived downstream of the dam at the beginning and in the middle of the flood tide. Glass eels migrated through the dam openings preferentially from the middle of the flood to the beginning of the ebb tide. Eel densities were highest during the second tide of each tide cycle that arrived at the estuarine dam and when the difference in water level between upstream and downstream of the dam was greatest, particularly at the end of the flood. Analysis of the influence of each environmental factor provided a good prediction of the glass eel recruitment peaks and, therefore, of the most favourable temporal windows for their migration. The water level and temperature were the most important environmental factors. These results provide the information needed for a dam-management program that is compatible with glass eel migration.

  10. Temporal variability of remotely sensed suspended sediment and sea surface temperature patterns in Mobile Bay, Alabama

    USGS Publications Warehouse

    Rucker, J.B.; Stumpf, R.P.; Schroeder, W.W.

    1990-01-01

    Distribution patterns of suspended sediments and sea surface temperatures in, Mobile Bay were derived from algorithms using digital data from the visible, near infrared, and infrared channels of the Advanced Very High Resolution Radiometer (AVHRR) on the NOAA-TIROS-N satellite. Closely spaced AVHRR scenes for January 20, 24, and 29, 1982, were compared with available environmental information taken during the same period. A complex interaction between river discharge, winds, and astronomical tides controlled the distribution patterns of suspended sediments. These same variables, coupled with air temperatures, also governed the distribution patterns of sea surface temperatures. ?? 1990 Estuarine Research Federation.

  11. Spatial and temporal patterns in Cimex lectularius (Hemiptera: Cimicidae) reporting in Philadelphia, PA.

    PubMed

    Mabud, Tarub S; Barbarin, Alexis M; Barbu, Corentin M; Levy, Katelyn H; Edinger, Jason; Levy, Michael Z

    2014-01-01

    We analyzed a comprehensive telephone log of pest infestation reports to assess the spatial and temporal trends in Cimex lectularius L. (bed bug) reporting throughout Philadelphia, PA. Citywide spatial analyses of reports from September 2011 to June 2012 revealed several statistically significant bed bug hotspots. However, these were small and diffuse. Temporal analyses of reports from December 2008 to May 2011 detected prominent seasonality in bed bug reporting, peaking in August and reaching a nadir in February each year. Controlling for seasonal cycling, the number of bed bug reports in Philadelphia increased steadily at a rate of approximately 4.5% per month (or 69.45% per year) from December 2008 to May 2011. While it may be difficult to spatially target citywide bed bug control measures because of the insects' widespread migration, interventions informed by seasonal trends may enhance efforts to curb the recent increases in urban bed bug populations. PMID:24605452

  12. Spatio-temporal pattern of viral meningitis in Michigan, 1993-2001

    NASA Astrophysics Data System (ADS)

    Greene, Sharon K.; Schmidt, Mark A.; Stobierski, Mary Grace; Wilson, Mark L.

    2005-05-01

    To characterize Michigan's high viral meningitis incidence rates, 8,803 cases from 1993-2001 were analyzed for standard epidemiological indices, geographic distribution, and spatio-temporal clusters. Blacks and infants were found to be high-risk groups. Annual seasonality and interannual variability in epidemic magnitude were apparent. Cases were concentrated in southern Michigan, and cumulative incidence was correlated with population density at the county level (r=0.45, p<0.001). Kulldorff's Scan test identified the occurrence of spatio-temporal clusters in Lower Michigan during July-October 1998 and 2001 (p=0.01). More extensive data on cases, laboratory isolates, sociodemographics, and environmental exposures should improve detection and enhance the effectiveness of a Space-Time Information System aimed at prevention.

  13. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition

    NASA Astrophysics Data System (ADS)

    Li, Yongfu; Chen, Na; Harmon, Mark E.; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A.; Mao, Jingdong

    2015-10-01

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11?litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced 13C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species.

  14. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition

    PubMed Central

    Li, Yongfu; Chen, Na; Harmon, Mark E.; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A.; Mao, Jingdong

    2015-01-01

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11?litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced 13C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species. PMID:26515033

  15. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition.

    PubMed

    Li, Yongfu; Chen, Na; Harmon, Mark E; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A; Mao, Jingdong

    2015-01-01

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11?litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced (13)C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species. PMID:26515033

  16. The Transcriptional Repressor MYB2 Regulates Both Spatial and Temporal Patterns of Proanthocyandin and Anthocyanin Pigmentation in Medicago truncatula.

    PubMed

    Jun, Ji Hyung; Liu, Chenggang; Xiao, Xirong; Dixon, Richard A

    2015-10-01

    Accumulation of anthocyanins and proanthocyanidins (PAs) is limited to specific cell types and developmental stages, but little is known about how antagonistically acting transcriptional regulators work together to determine temporal and spatial patterning of pigmentation at the cellular level, especially for PAs. Here, we characterize MYB2, a transcriptional repressor regulating both anthocyanin and PA biosynthesis in the model legume Medicago truncatula. MYB2 was strongly upregulated by MYB5, a major regulator of PA biosynthesis in M. truncatula and a component of MYB-basic helix loop helix-WD40 (MBW) activator complexes. Overexpression of MYB2 abolished anthocyanin and PA accumulation in M. truncatula hairy roots and Arabidopsis thaliana seeds, respectively. Anthocyanin deposition was expanded in myb2 mutant seedlings and flowers accompanied by increased anthocyanin content. PA mainly accumulated in the epidermal layer derived from the outer integument in the M. truncatula seed coat, starting from the hilum area. The area of PA accumulation and ANTHOCYANIDIN REDUCTASE expression was expanded into the seed body at the early stage of seed development in the myb2 mutant. Genetic, biochemical, and cell biological evidence suggests that MYB2 functions as part of a multidimensional regulatory network to define the temporal and spatial pattern of anthocyanin and PA accumulation linked to developmental processes. PMID:26410301

  17. Temporal Patterns and Environmental Correlates of Macroinvertebrate Communities in Temporary Streams

    PubMed Central

    Botwe, Paul K.; Barmuta, Leon A.; Magierowski, Regina; McEvoy, Paul; Goonan, Peter; Carver, Scott

    2015-01-01

    Temporary streams are characterised by short periods of seasonal or annual stream flow after which streams contract into waterholes or pools of varying hydrological connectivity and permanence. Although these streams are widespread globally, temporal variability of their ecology is understudied, and understanding the processes that structure community composition in these systems is vital for predicting and managing the consequences of anthropogenic impacts. We used multivariate and univariate approaches to investigate temporal variability in macroinvertebrate compositional data from 13 years of sampling across multiple sites from autumn and spring, in South Australia, the driest state in the driest inhabited continent in the world. We examined the potential of land-use, geographic and environmental variables to predict the temporal variability in macroinvertebrate assemblages, and also identified indicator taxa, that is, those highly correlated with the most significantly associated physical variables. Temporal trajectories of macroinvertebrate communities varied within site in both seasons and across years. A combination of land-use, geographic and environmental variables accounted for 24% of the variation in community structure in autumn and 27% in spring. In autumn, community composition among sites were more closely clustered together relative to spring suggesting that communities were more similar in autumn than in spring. In both seasons, community structure was most strongly correlated with conductivity and latitude, and community structure was more associated with cover by agriculture than urban land-use. Maintaining temporary streams will require improved catchment management aimed at sustaining seasonal flows and critical refuge habitats, while also limiting the damaging effects from increased agriculture and urban developments. PMID:26556711

  18. Two distinct modes of forebrain circuit dynamics underlie temporal patterning in the vocalizations of young songbirds

    PubMed Central

    Aronov, Dmitriy; Veit, Lena; Goldberg, Jesse H.; Fee, Michale S.

    2011-01-01

    Accurate timing is a critical aspect of motor control, yet the temporal structure of many mature behaviors emerges during learning from highly variable exploratory actions. How does a developing brain acquire the precise control of timing in behavioral sequences? To investigate the development of timing, we analyzed the songs of young juvenile zebra finches. These highly variable vocalizations, akin to human babbling, gradually develop into temporally-stereotyped adult songs. We find that the durations of syllables and silences in juvenile singing are formed by a mixture of two distinct modes of timing – a random mode producing broadly-distributed durations early in development, and a stereotyped mode underlying the gradual emergence of stereotyped durations. Using lesions, inactivations, and localized brain cooling we investigated the roles of neural dynamics within two premotor cortical areas in the production of these temporal modes. We find that LMAN (lateral magnocellular nucleus of the nidopallium) is required specifically for the generation of the random mode of timing, and that mild cooling of LMAN causes an increase in the durations produced by this mode. On the contrary, HVC (used as a proper name) is required specifically for producing the stereotyped mode of timing, and its cooling causes a slowing of all stereotyped components. These results show that two neural pathways contribute to the timing of juvenile songs, and suggest an interesting organization in the forebrain, whereby different brain areas are specialized for the production of distinct forms of neural dynamics. PMID:22072687

  19. Patterns and scales of connectivity: temporal stability and variation within a marine metapopulation.

    PubMed

    Le Corie, Nicolas; Johnson, Ladd E; Smith, Geneviéve K; Guichard, Frédéric

    2015-08-01

    Because many marine invertebrates have a dispersive planktonic phase, the spatial scale of demographic, connectivity among local populations remains a key, but elusive, parameter driving population and metapopulation dynamics. However, temporal variation in the scale of connectivity remains largely undocumented, despite its recognized importance for predicting population responses to environmental changes. To assess the temporal stability of metapopulation connectivity, we conducted a large-scale survey of a blue mussel (Mytilus spp.) metapopulation for five years along a 100-km section of coastline of the Gaspé Peninsula, Québec, Canada. For each year, we estimated the scale of demographic coupling among 27-29 sites within our study region, using the spatial cross-covariance between adult abundance and recruit density across sites. Despite large interannual variability in overall recruit abundance, our analysis revealed stationary spatial distributions of adult and recruit abundance. More importantly, our analysis revealed a consistent demographic coupling among populations at a distance ranging from 12 to 24 km in all but one of the five years studied. The scale of connectivity in this system is thus temporally stable, but can occasionally show irregular fluctuations, and our results provide evidence in support of the integration of time-varying connectivity to marine metapopulation and reserve network theories. PMID:26405749

  20. A Multi-temporal MODIS Based Platform to Analyze Suspended Sediment Distribution Patterns in the Amazon River

    NASA Astrophysics Data System (ADS)

    Park, E.; Latrubesse, E. M.

    2014-12-01

    Patterns of surface sediment concentration distribution in rivers are significant for understanding the broad ranges of fluvial environmental systems. In the case of the Amazon Basin, complexity in sediment pattern distribution is affected by the anabranching channel pattern of the Amazon River, inputs from tributaries (some of which are among the largest rivers on earth) and the existence of huge and complex floodplains. This study presents a remote sensing based platform that aims to improve the understanding of the patterns of sediment distributions over the Amazon River by estimating surface sediment concentration. Field acquired surface sediment concentration data were supplied from three gauging stations representing the upstream, midstream and downstream sections of the Amazon River from 2000 to 2010 and calibrated with over 1,300 MODIS daily surface reflectance images. Robust empirical models were derived (0.63temporal variability of surface sediments in the Amazon River Basin, the largest and the most complex river system on earth.

  1. A circuit model of the temporal pattern generator of Caenorhabditis egg-laying behavior

    E-print Network

    Zhang, Mi; Schafer, William R.; Breitling, Rainer

    2010-06-07

    for the time constant of the inactive phase. Together they form an integrated circuit that drives the clustered egg-laying pattern. Conclusions The detailed predictions derived from this model can now be tested by straightforward validation experiments....

  2. Temporal Motifs

    NASA Astrophysics Data System (ADS)

    Kovanen, Lauri; Karsai, Márton; Kaski, Kimmo; Kertész, János; Saramäki, Jari

    We discuss the temporal motifs approach that is aimed at detecting significant, intrinsically dynamic, mesoscopic structures and patterns in temporal networks, which cannot be seen in static or aggregated networks. Such patterns involve several nodes and their timed contacts. The approach consists of three phases: (1) identifying temporal subgraphs, (2) assigning the subgraphs to equivalence classes, and (3) assessing the relevance, surprise and significance of class-wise counts against some reference. We discuss these phases in detail, and apply the presented method to a temporal network of mobile telephone calls.

  3. A smart sensor system for trace organic vapor detection using a temperature-controlled array of surface acoustic wave vapor sensors, automated preconcentrator tubes, and pattern recognition

    SciTech Connect

    Grate, J.W.; Rose-Pehrsson, S.L.; Klusty, M.; Wohltjen, H.

    1993-05-01

    A smart sensor system for the detection, of toxic organophosphorus and toxic organosulfur vapors at trace concentrations has been designed, fabricated, and tested against a wide variety of vapor challenges. The key features of the system are: An array of four surface acoustic wave (SAW) vapor sensors, temperature control of the vapor sensors, the use of pattern recognition to analyze the sensor data, and an automated sampling system including thermally-desorbed preconcentrator tubes (PCTs).

  4. Acoustic Analyses and Intelligibility Assessments of Timing Patterns Among Chinese English Learners with Different Dialect Backgrounds.

    PubMed

    Chen, Hsueh Chu

    2015-12-01

    This paper includes two interrelated studies. The first production study investigates the timing patterns of English as spoken by Chinese learners with different dialect backgrounds. The second comprehension study explores native and non-native speakers' assessments of the intelligibility of Chinese-accented English, and examines the effects of the listeners' language backgrounds on their perceptions of Chinese-accented English. The results showed that the Hong Kong (HK) group performed better in unstressed syllable duration compared with the Taiwan (TW) and Beijing (BJ) groups. The results also revealed that all six listener groups achieved at least 78 % intelligibility, with the native speaker accent achieving the highest rating, followed by the HK, TW, and BJ accents. A shared first language (L1) background may have little or no impact on intelligibility. The speech properties might prevail over the shared L1 effect. All listeners perceived inappropriate word-stress shift and consonant cluster simplifications to be the most unintelligible features. PMID:25194949

  5. Spatial and temporal patterns of carabid activity-density in cereals do not explain levels of predation on weed seeds.

    PubMed

    Saska, P; van der Werf, W; de Vries, E; Westerman, P R

    2008-04-01

    Seed predation is an important component of seed mortality of weeds in agro-ecosystems, but the agronomic use and management of this natural weed suppression is hampered by a lack of insight in the underlying ecological processes. In this paper, we investigate whether and how spatial and temporal variation in activity-density of granivorous ground beetles (Coleoptera: Carabidae) results in a corresponding pattern of seed predation. Activity-density of carabids was measured by using pitfall traps in two organic winter wheat fields from March to July 2004. Predation of seeds (Capsella bursa-pastoris, Lamium amplexicaule, Poa annua and Stellaria media) was assessed using seed cards at the same sites and times. As measured by pitfall traps, carabids were the dominant group of insects that had access to the seed cards. In the field, predation of the four different species of seed was in the order: C. bursa-pastoris>P. annua>S. media>L. amplexicaule; and this order of preference was confirmed in the laboratory using the dominant species of carabid. On average, seed predation was higher in the field interior compared to the edge, whereas catches of carabids were highest near the edge. Weeks with elevated seed predation did not concur with high activity-density of carabids. Thus, patterns of spatial and temporal variation in seed predation were not matched by similar patterns in the abundance of granivorous carabid beetles. The lack of correspondence is ascribed to effects of confounding factors, such as weather, the background density of seeds, the composition of the carabid community, and the phenology and physiological state of the beetles. Our results show that differences in seed loss among weed species may be predicted from laboratory trials on preference. However, predator activity-density, as measured in pitfall traps, is an insufficient predictor of seed predation over time and space within a field. PMID:18076785

  6. Factors controlling the long-term temporal and spatial patterns of nitrate-nitrogen export in a dairy farming watershed.

    PubMed

    Jiang, Rui; Wang, Chun-ying; Hatano, Ryusuke; Kuramochi, Kanta; Hayakawa, Atsushi; Woli, Krishna P

    2015-04-01

    It is difficult to investigate the factors that control the riverine nitrate-nitrogen (NO3--N) export in a watershed which gains or losses groundwater. To control the NO3--N contamination in these watersheds, it is necessary to investigate the factors that are related to the export of NO3--N that is only produced by the watershed itself. This study was conducted in the Shibetsu watershed located in eastern Hokkaido, Japan, which gains external groundwater contribution (EXT) and 34% of the annual NO3--N loading occurs through EXT. The riverine NO3--N exports from 1980 to 2009 were simulated by the SWAT model, and the factors controlling the temporal and spatial patterns of NO3--N exports were investigated without considering the EXT. The results show that hydrological events control NO3--N export at the seasonal scale, while the hydrological and biogeochemical processes are likely to control NO3--N export at the annual scale. There was an integrated effect among the land use, topography, and soil type related to denitrification process, that regulated the spatial patterns of NO3--N export. The spatial distribution of NO3--N export from hydrologic response units (HRUs) identified the agricultural areas with surplus N that are vulnerable to nitrate contamination. A new standard for the N fertilizer application rate including manure application should be given to control riverine NO3--N export. This study demonstrates that applying the SWAT model is an appropriate method to determine the temporal and spatial patterns of NO3--N export from the watershed which includes EXT and to identify the crucial pollution areas within a watershed in which the management practices can be improved to more effectively control NO3--N export to water bodies. PMID:25805369

  7. Mountain chickadees from different elevations sing different songs: acoustic adaptation, temporal drift or signal of local adaptation?

    PubMed Central

    Branch, Carrie L.; Pravosudov, Vladimir V.

    2015-01-01

    Song in songbirds is widely thought to function in mate choice and male–male competition. Song is also phenotypically plastic and typically learned from local adults; therefore, it varies across geographical space and can serve as a cue for an individual's location of origin, with females commonly preferring males from their respective location. Geographical variation in song dialect may reflect acoustic adaptation to different environments and/or serve as a signal of local adaptation. In montane environments, environmental differences can occur over an elevation gradient, favouring local adaptations across small spatial scales. We tested whether food caching mountain chickadees, known to exhibit elevation-related differences in food caching intensity, spatial memory and the hippocampus, also sing different dialects despite continuous distribution and close proximity. Male songs were collected from high and low elevations at two different mountains (separated by 35 km) to test whether song differs between elevations and/or between adjacent populations at each mountain. Song structure varied significantly between high and low elevation adjacent populations from the same mountain and between populations from different mountains at the same elevations, despite a continuous distribution across each mountain slope. These results suggest that elevation-related differences in song structure in chickadees might serve as a signal for local adaptation. PMID:26064641

  8. Steady locomotion in dogs: temporal and associated spatial coordination patterns and the effect of speed.

    PubMed

    Maes, Ludovic D; Herbin, Marc; Hackert, Rémi; Bels, Vincent L; Abourachid, Anick

    2008-01-01

    Only a few studies on quadrupedal locomotion have investigated symmetrical and asymmetrical gaits in the same framework because the mechanisms underlying these two types of gait seem to be different and it took a long time to identify a common set of parameters for their simultaneous study. Moreover, despite the clear importance of the spatial dimension in animal locomotion, the relationship between temporal and spatial limb coordination has never been quantified before. We used anteroposterior sequence (APS) analysis to analyse 486 sequences from five malinois (Belgian shepherd) dogs moving at a large range of speeds (from 0.4 to 10.0 m s(-1)) to compare symmetrical and asymmetrical gaits through kinematic and limb coordination parameters. Considerable continuity was observed in cycle characteristics, from walk to rotary gallop, but at very high speeds an increase in swing duration reflected the use of sagittal flexibility of the vertebral axis to increase speed. This change occurred after the contribution of the increase in stride length had become the main element driving the increase in speed - i.e. when the dogs had adopted asymmetrical gaits. As the left and right limbs of a pair are linked to the same rigid structure, spatial coordination within pairs of limbs reflected the temporal coordination within pairs of limbs whatever the speed. By contrast, the relationship between the temporal and spatial coordination between pairs of limb was found to depend on speed and trunk length. For trot and rotary gallop, this relationship was thought also to depend on the additional action of trunk flexion and leg angle at footfall. PMID:18083742

  9. Spatio-temporal Averaging of Removal Rate constants in River Networks: Is there an Emergent Pattern?

    NASA Astrophysics Data System (ADS)

    Basu, N. B.; Rao, P. C.; Zanardo, S.; Donner, S. D.; Ye, S.; Sivapalan, M.

    2009-12-01

    Scaling of nutrient loads across river networks is a function of complex interactions between hydrologic and biogeochemical processes that modulate the contaminant input signals from the hillslope via aggregation and attenuation in a converging network. We examined the inter-annual variability in stream nutrient delivery ratio (NDR) as moderated by the coupling between hydrologic and biogeochemical processes across the climate-landscape continuum. Experimental and modeling studies at the reach scale suggest an inverse dependence of the biogeochemical cycling rate constant (k; T-1) on the stream stage (h, L). This inverse function was implemented in the THMB large-scale hydrology and biogeochemistry model to describe nutrient processing at the reach scale, and simulate nitrogen export across Mississippi Basin. The spatio-temporally averaged reaction rate (kavg) constant from THMB exhibited similar inverse dependence on the stage at the outlet of large basins (~50,000 km2). Such emergent k-h dependence is hypothesized to be indicative of fractal scaling behavior of in-stream biogeochemical processing. Two parsimonious models were developed to scale up from the reach-scale to watershed scale, and explore the spatio-temporal averaging within the network under diverse climate forcing conditions. The first model was derived from THREW, and was enhanced by adding a two-compartment biogeochemical reaction module. The second model used the inverse k-h dependence at the daily time scale, without invoking the two-compartment model, similar to that used in the basin-scale model. Preliminary analyses indicated that temporal averaging decreased the exponent of the k-h relationship at smaller spatial scales (e.g., first- or second- order watersheds); however, the relationship converged towards the reach-scale dependence function at larger scales. The average k value at the smaller scales, and the trajectory of convergence, is a function of climatic (e.g., rainfall frequency,depth) and geomorphic (e.g., network structure, channel dimensions) controls. The reach-scale k-h relationship thus acts as an “attractor” for the entire system, such that at larger spatial scales an effective k, derived solely from the mean stage at the watershed outlet, is adequate to describe nutrient processing within the entire network. Implications of this unique spatio-temporal averaging behavior on the development of predictive models that describe nutrient loads in catchments across scales are discussed.

  10. Decoupled temporal patterns of evolution and ecology in two post-Paleozoic clades

    NASA Technical Reports Server (NTRS)

    McKinney, F. K.; Lidgard, S.; Sepkoski, J. J. Jr; Taylor, P. D.

    1998-01-01

    Counts of taxonomic diversity are the prevailing standards for documenting large-scale patterns of evolution in the fossil record. However, the secular pattern of relative ecological importance between the bryozoan clades Cyclostomata and Cheilostomata is not reflected fully in compilations of generic diversity or within-fauna species richness, and the delayed ecological recovery of the Cheilostomata after the mass extinction at the Cretaceous-Tertiary boundary is missed entirely. These observations demonstrate that evolutionary success and ecological dominance can be decoupled and profoundly different, even over tens of millions of years.

  11. Decoupled temporal patterns of evolution and ecology in two post-Paleozoic clades.

    PubMed

    McKinney, F K; Lidgard, S; Sepkoski, J J; Taylor, P D

    1998-08-01

    Counts of taxonomic diversity are the prevailing standards for documenting large-scale patterns of evolution in the fossil record. However, the secular pattern of relative ecological importance between the bryozoan clades Cyclostomata and Cheilostomata is not reflected fully in compilations of generic diversity or within-fauna species richness, and the delayed ecological recovery of the Cheilostomata after the mass extinction at the Cretaceous-Tertiary boundary is missed entirely. These observations demonstrate that evolutionary success and ecological dominance can be decoupled and profoundly different, even over tens of millions of years. PMID:9694648

  12. Patterns of life in temporal data: indexing and hashing for fast and relevant data retrieval

    NASA Astrophysics Data System (ADS)

    Jacobsen, Matthew; Levchuk, Georgiy; Weston, Mark; Roberts, Jennifer

    2014-05-01

    As datasets with time-series records, such as computer logs or financial transactions, grow larger, indexing solutions are needed that can efficiently filter out irrelevant records while retrieving most of relevant ones. These methods must capture essential temporal properties present in the data, and provide a scalable way to generate the index and update it as the new records are presented. Current time-series analysis and indexing methods are insufficient, because the fixed features they rely on capture only limited periodicity in time-series data and become brittle when the time-series encode heterogeneous temporal behaviors and are noisy and incomplete. New indexing solutions must not only cluster the data, but also infer the meaningful characteristics and present them to the users to improve their understanding of the data. In this paper, we develop an indexing procedure based on typical latent behaviors within the time series. Our method (1) converts the data to a quantized format, (2) learns identifying behaviors generating the data, and (3) produces an index for the time series based on these behaviors. The method is found to outperform standard approaches to time series indexing in terms of recall and precision for varying degrees of data noise.

  13. Identification of Damaged Wheat Kernels and Cracked-Shell Hazelnuts with Impact Acoustics Time-Frequency Patterns

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A new adaptive time-frequency (t-f) analysis and classification procedure is applied to impact acoustic signals for detecting hazelnuts with cracked shells and three types of damaged wheat kernels. Kernels were dropped onto a steel plate, and the resulting impact acoustic signals were recorded with ...

  14. Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant genomes typically contain several hundred defensin-like (DEFL) genes that encode short proteins resembling defensins, which are antimicrobial polypeptides. Little is known about the expression patterns of DEFL genes because most were recently discovered and many are not well represented on sta...

  15. Temporal pattern of the stress hormone and cytokine response in pigs following a lipopolysaccharide (LPS) challenge

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study assessed the pattern of immune and stress response following a LPS challenge. Crossbred pigs (n=28 pigs, 2 males and 2 females from 7 litters) were obtained at weaning (21 to 28 d of age). Pigs were transferred to a climate controlled facility, placed into individual pens and allowed ad l...

  16. Global Climate Patterns to Model the Spatial and Temporal Distribution of Vector-Borne Diseases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Global climate patterns, such as the El Niño/Southern Oscillation (ENSO), have been shown to have an impact on vector-borne infectious disease outbreaks. In October 2006 the Climate Prediction Center of the National Oceanic and Atmospheric Administration (NOAA/CPC) issued an unscheduled El Niño advi...

  17. How Temporal and Spatial Aspects of Presenting Visualizations Affect Learning about Locomotion Patterns

    ERIC Educational Resources Information Center

    Imhof, Birgit; Scheiter, Katharina; Edelmann, Jorg; Gerjets, Peter

    2012-01-01

    Two studies investigated the effectiveness of dynamic and static visualizations for a perceptual learning task (locomotion pattern classification). In Study 1, seventy-five students viewed either dynamic, static-sequential, or static-simultaneous visualizations. For tasks of intermediate difficulty, dynamic visualizations led to better…

  18. Spatial and Temporal Patterns of Mercury Accumulation in Lacustrine Sediments Across the Laurentian Great Lakes Region

    EPA Science Inventory

    Data from 103 sediment cores from the Great Lakes and inland lakes of the Great Lakes airshed were compiled to examine and provide a synthesis of patterns of historical and recent changes in mercury (Hg) deposition. Limited data from the lower Laurentian Great Lakes shows a lega...

  19. SPATIAL AND TEMPORAL PATTERNS OF MAIZE WEEVIL PRE-HARVEST INFESTATION IN CORN FIELDS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Three corn fields were sampled continuously for 6- or 8-wks to determine the invasion patterns of the maize weevil, Sitophilus zeamais Motschulsky (Coleoptera: Curculionidae), infestation. The weekly samplings started when the kernel moisture level was about 30%. The weevil infestation levels vari...

  20. An analytical framework for quantifying and testing patterns of temporal dynamics in social networks

    E-print Network

    Wright, Timothy F.

    to understanding how relationships form and change over time but are rarely studied explicitly in animal groups in animal groups. Social network approaches are useful in describing association patterns and provide from experimentally formed captive groups of monk parakeets, Myiopsitta monachus, to both evaluate our

  1. Spatial-temporal change in precipitation patterns based on the cloud model across the Wei River Basin, China

    NASA Astrophysics Data System (ADS)

    Huang, Shengzhi; Hou, Beibei; Chang, Jianxia; Huang, Qiang; Chen, Yutong

    2015-04-01

    It is of significant importance to investigate the spatial-temporal change in precipitation patterns due to its great effects on droughts, floods, soil erosion and water resource management. A complete investigation of precipitation structure and its distribution pattern based on daily precipitation covering 1960-2005 at 21 meteorological stations in the Wei River Basin has been performed. In order to comprehensively and objectively describe the changing pattern of precipitation, the cloud model is employed to quantitatively analyse the average, uniformity and stability of precipitation. Results indicate the following: (1) the occurrence of different precipitation durations exhibits a positive exponential curve with the decrease in precipitation durations, and 1-3-day events are the predominant precipitation events which have an increasing trend; (2) precipitation and its non-uniformity is increasingly reducing, while its stability increases initially then decreases; (3) mean precipitation reduces from southeast to northwest, and the precipitation of the Guanzhong Plain has a low uniformity and stability due to its location and increasingly intensifying human activities. The cloud model provides a new idea and quantitative measure for the evaluation of the uniformity and stability of precipitation.

  2. Temporal lobe sulcal pattern and the bony impressions in the middle cranial fossa: the case of the el Sidrón (Spain) neandertal sample.

    PubMed

    Rosas, Antonio; Peña-Melián, Angel; García-Tabernero, Antonio; Bastir, Markus; De La Rasilla, Marco

    2014-12-01

    Correspondence between temporal lobe sulcal pattern and bony impressions on the middle cranial fossae (MCF) was analyzed. MCF bone remains (SD-359, SD-315, and SD-1219) from the El Sidrón (Spain) neandertal site are analyzed in this context. Direct comparison of the soft and hard tissues from the same individual was studied by means of: 1) dissection of two human heads; 2) optic (white light) surface scans; 3) computed tomography and magnetic resonance of the same head. The inferior temporal sulcus and gyrus are the features most strongly influencing MCF bone surface. The Superior temporal sulcus and middle temporal and fusiform gyri also leave imprints. Temporal lobe form differs between Homo sapiens and neandertals. A wider and larger post-arcuate fossa (posterior limit of Brodmann area 20 and the anterior portion of area 37) is present in modern humans as compared to neandertals. However other traits of the MCF surface are similar in these two large-brained human groups. A conspicuous variation is appreciated in the more vertical location of the inferior temporal gyrus in H. sapiens. In parallel, structures of the lower surface of the temporal lobe are more sagittally orientated. Grooves accommodating the fusiform and the lower temporal sulci become grossly parallel to the temporal squama. These differences can be understood within the context of a supero-lateral deployment of the lobe in H. sapiens, a pattern previously identified (Bastir et al., Nat Commun 2 (2011) 588-595). Regarding dural sinus pattern, a higher incidence of petrosquamous sinus is detected in neandertal samples. PMID:24943273

  3. Is the Cell Nucleus a Necessary Component in Precise Temporal Patterning?

    PubMed Central

    Albert, Jaroslav; Rooman, Marianne

    2015-01-01

    One of the functions of the cell nucleus is to help regulate gene expression by controlling molecular traffic across the nuclear envelope. Here we investigate, via stochastic simulation, what effects, if any, does segregation of a system into the nuclear and cytoplasmic compartments have on the stochastic properties of a motif with a negative feedback. One of the effects of the nuclear barrier is to delay the nuclear protein concentration, allowing it to behave in a switch-like manner. We found that this delay, defined as the time for the nuclear protein concentration to reach a certain threshold, has an extremely narrow distribution. To show this, we considered two models. In the first one, the proteins could diffuse freely from cytoplasm to nucleus (simple model); and in the second one, the proteins required assistance from a special class of proteins called importins. For each model, we generated fifty parameter sets, chosen such that the temporal profiles they effectuated were very similar, and whose average threshold time was approximately 150 minutes. The standard deviation of the threshold times computed over one hundred realizations were found to be between 1.8 and 7.16 minutes across both models. To see whether a genetic motif in a prokaryotic cell can achieve this degree of precision, we also simulated five variations on the coherent feed-forward motif (CFFM), three of which contained a negative feedback. We found that the performance of these motifs was nowhere near as impressive as the one found in the eukaryotic cell; the best standard deviation was 6.6 minutes. We argue that the significance of these results, the fact and necessity of spatio-temporal precision in the developmental stages of eukaryotes, and the absence of such a precision in prokaryotes, all suggest that the nucleus has evolved, in part, under the selective pressure to achieve highly predictable phenotypes. PMID:26226505

  4. Modeling and Statistical Analysis of the Spatio-Temporal Patterns of Seasonal Influenza in Israel

    PubMed Central

    Katriel, Guy; Yaari, Rami; Roll, Uri; Stone, Lewi

    2012-01-01

    Background Seasonal influenza outbreaks are a serious burden for public health worldwide and cause morbidity to millions of people each year. In the temperate zone influenza is predominantly seasonal, with epidemics occurring every winter, but the severity of the outbreaks vary substantially between years. In this study we used a highly detailed database, which gave us both temporal and spatial information of influenza dynamics in Israel in the years 1998–2009. We use a discrete-time stochastic epidemic SIR model to find estimates and credible confidence intervals of key epidemiological parameters. Findings Despite the biological complexity of the disease we found that a simple SIR-type model can be fitted successfully to the seasonal influenza data. This was true at both the national levels and at the scale of single cities.The effective reproductive number Re varies between the different years both nationally and among Israeli cities. However, we did not find differences in Re between different Israeli cities within a year. Re was positively correlated to the strength of the spatial synchronization in Israel. For those years in which the disease was more “infectious”, then outbreaks in different cities tended to occur with smaller time lags. Our spatial analysis demonstrates that both the timing and the strength of the outbreak within a year are highly synchronized between the Israeli cities. We extend the spatial analysis to demonstrate the existence of high synchrony between Israeli and French influenza outbreaks. Conclusions The data analysis combined with mathematical modeling provided a better understanding of the spatio-temporal and synchronization dynamics of influenza in Israel and between Israel and France. Altogether, we show that despite major differences in demography and weather conditions intra-annual influenza epidemics are tightly synchronized in both their timing and magnitude, while they may vary greatly between years. The predominance of a similar main strain of influenza, combined with population mixing serve to enhance local and global influenza synchronization within an influenza season. PMID:23056192

  5. Discovering and Predicting Temporal Patterns of WiFi-interactive Social Populations

    E-print Network

    Li, Xiang; Vasilakos, Athanasios V

    2014-01-01

    Extensive efforts have been devoted to characterizing the rich connectivity patterns among the nodes (components) of such complex networks (systems), and in the course of development of research in this area, people have been prompted to address on a fundamental question: How does the fascinating yet complex topological features of a network affect or determine the collective behavior and performance of the networked system? While elegant attempts to address this core issue have been made, for example, from the viewpoints of synchronization, epidemics, evolutionary cooperation, and the control of complex networks, theoretically or empirically, this widely concerned key question still remains open in the newly emergent field of network science. Such fruitful advances also push the desire to understand (mobile) social networks and characterize human social populations with the interdependent collective dynamics as well as the behavioral patterns. Nowadays, a great deal of digital technologies are unobtrusively ...

  6. Temporal and spatial patterning of transgene expression by near-infrared irradiation

    PubMed Central

    Gomez, Leyre; Lopez, Daniel; Arruebo, Manuel; Wilson, Christopher G; Franceschi, Renny T.; Voellmy, Richard; Santamaria, Jesus; Vilaboa, Nuria

    2014-01-01

    We investigated whether near-infrared (NIR) light could be employed for patterning transgene expression in plasmonic cell constructs. Hollow gold nanoparticles with a plasmon surface band absorption peaking at ~750 nm, a wavelength within the so called “tissue optical window”, were used as fillers in fibrin-based hydrogels. These composites, which efficiently transduce NIR photon energy into heat, were loaded with genetically-modified cells that harbor a heat-activated and ligand-dependent gene switch for regulating transgene expression. NIR laser irradiation in the presence of ligand triggered 3-dimensional patterns of transgene expression faithfully matching the illuminated areas of plasmonic cell constructs. This noninvasive technology was proven useful for remotely controlling in vivo the spatiotemporal bioavailability of transgenic vascular endothelial growth factor. The combination of spatial control by means of NIR irradiation along with safe and timed transgene induction presents a high application potential for engineering tissues in regenerative medicine scenarios. PMID:24957294

  7. Temporal and spatial patterning of transgene expression by near-infrared irradiation.

    PubMed

    Martin-Saavedra, Francisco M; Cebrian, Virginia; Gomez, Leyre; Lopez, Daniel; Arruebo, Manuel; Wilson, Christopher G; Franceschi, Renny T; Voellmy, Richard; Santamaria, Jesus; Vilaboa, Nuria

    2014-09-01

    We investigated whether near-infrared (NIR) light could be employed for patterning transgene expression in plasmonic cell constructs. Hollow gold nanoparticles with a plasmon surface band absorption peaking at ?750 nm, a wavelength within the so called "tissue optical window", were used as fillers in fibrin-based hydrogels. These composites, which efficiently transduce NIR photon energy into heat, were loaded with genetically-modified cells that harbor a heat-activated and ligand-dependent gene switch for regulating transgene expression. NIR laser irradiation in the presence of ligand triggered 3-dimensional patterns of transgene expression faithfully matching the illuminated areas of plasmonic cell constructs. This non-invasive technology was proven useful for remotely controlling in vivo the spatiotemporal bioavailability of transgenic vascular endothelial growth factor. The combination of spatial control by means of NIR irradiation along with safe and timed transgene induction presents a high application potential for engineering tissues in regenerative medicine scenarios. PMID:24957294

  8. Temporal patterns of diversity: Assessing the biotic and abiotic controls on ant assemblages

    USGS Publications Warehouse

    Dunn, R.R.; Parker, C.R.; Sanders, N.J.

    2007-01-01

    In this study, we use 12 months of data from 11 ant assemblages to test whether seasonal variation in ant diversity is governed by either the structuring influences of interspecific competition or environmental conditions. Because the importance of competition might vary along environmental gradients, we also test whether the signature of competition depends on elevation. We find little evidence that competition structures the seasonal patterns of activity in the ant assemblages considered, but find support for the effects of temperature on seasonal patterns of diversity, especially at low-elevation sites. Although, in general, both competition and the environment interact to structure ant assemblages, our results suggest that environmental conditions are the primary force structuring the seasonal activity of the ant assemblages studied here. ?? 2007 The Linnean Society of London.

  9. Spatio-temporal complexity of electroconvection patterns in nematic liquid crystals

    E-print Network

    Alexei Krekhov; Bernd Dressel; Werner Pesch; Vladimir Delev; Eduard Batyrshin

    2015-10-14

    We investigate a number of complex patterns driven by the electro-convection instability in a planarly aligned layer of a nematic liquid crystal. They are traced back to various secondary instabilities of the ideal roll patterns bifurcating at onset of convection, whereby the basic nemato-hydrodynamic equations are solved by common Galerkin expansion methods. Alternatively these equations are systematically approximated by a set of coupled amplitude equations. They describe slow modulations of the convection roll amplitudes, which are coupled to a flow field component with finite vorticity perpendicular to the layer and to a quasi-homogeneous in-plane rotation of the director. It is demonstrated that the Galerkin stability diagram of the convection rolls is well reproduced by the corresponding one based on the amplitude equations. The main purpose of the paper is, however, to demonstrate that their direct numerical simulations match surprisingly well new experiments, which serves as a convincing test of our theoretical approach.

  10. Spatial pattern and temporal dynamics of northern bobwhite abundance and agricultural landuse, and potential casual factors 

    E-print Network

    Okay, Atiye Zeynep

    2006-04-12

    detrimental impact on NBW abundance and its habitats (Giuliano and Lutz 1993, Giuliano et al. 1999, Lusk et al. 2002). Extensive drought events can potentially have a significant impact on regional patterns of NBW abundance, especially in semi-arid regions... (Guthery et al 1988, Koerth and Guthery 1991, Giuliano and Lutz 1993). Errington 21 (1935) declared that the drought that occurred in southern Iowa in 1934 resulted in eradication of the entire year?s hatch. According to Rosene (1969) the summer...

  11. Mercury concentrations in Atlantic bottlenose dolphins (Tursiops truncatus) inhabiting the Indian River Lagoon, Florida: Patterns of spatial and temporal distribution.

    PubMed

    Schaefer, Adam M; Titcomb, Elizabeth Murdoch; Fair, Patricia A; Stavros, Hui-Chen W; Mazzoil, Marilyn; Bossart, Gregory D; Reif, John S

    2015-08-15

    Bottlenose dolphins (Tursiops truncatus) inhabiting the Indian River Lagoon, FL (IRL) have tissue mercury concentrations among the highest reported worldwide. Analysis of total mercury (THg) concentrations in blood collected between 2003 and 2012 showed a significant linear decrease over time (p=0.04). Significant differences in the spatial distribution of THg in resident IRL dolphins were also observed with a general gradient in concentration from north to south. Evaluation of local biogeochemistry and accumulation of mercury in prey species is needed to better understand factors influencing the distribution of Hg in the apex predator. Analyses of temporal and spatial patterns of exposure to THg in this sentinel species may have implications for both ecosystem and public health in the region. PMID:26119626

  12. Lead spatio-temporal pattern identification in urban microenvironments using moss bags and the Kohonen self-organizing maps

    NASA Astrophysics Data System (ADS)

    Deljanin, Isidora; Antanasijevi?, Davor; Vukovi?, Gordana; Uroševi?, Mira Ani?i?; Tomaševi?, Milica; Peri?-Gruji?, Aleksandra; Risti?, Mirjana

    2015-09-01

    The first investigation of the use of the Kohonen self-organizing map (SOM) which includes lead concentration and its isotopic composition in moss bags to assess the spatial and temporal patterns of lead in the urban microenvironments is presented in this paper. The moss bags experiment was carried out during 2011 in the city tunnel in Belgrade, as well as in street canyons at different heights (4, 8 and 16 m) and in public garages. The moss bags were exposed for 5 and 10 weeks. The results revealed that the 10 weeks period represents suitable exposure time in screening Pb isotopic composition in active biomonitoring analysis. The obtained results showed that the SOM analysis, by recognizing slight differences among moss samples regarding exposure time, horizontal and vertical spatial distribution, with both, contribution of stable lead isotopes and Pb concentration, could be recommended in biomonitoring analysis of lead distribution in urban microenvironments.

  13. Predicting New Target Conditions for Drug Retesting Using Temporal Patterns in Clinical Trials: A Proof of Concept

    PubMed Central

    He, Zhe; Weng, Chunhua

    2015-01-01

    Drug discovery is costly and time-consuming. Efficient drug repurposing promises to accelerate drug discovery with reduced cost. However, most successful repurposing cases so far have been achieved by serendipity. There is a need for more efficient computational methods for predicting new indications for existing drugs. This paper conducts a retrospective analysis of the temporal patterns of drug intervention trials for every drug in a pair of different conditions in ClinicalTrials.gov, including 550 drugs used for 451 conditions between 2003 and 2013. We found that drugs are often targeted towards conditions that are related by similar or identical eligibility criteria. We demonstrated the preliminary feasibility of predicting new target conditions for drug retesting among conditions with similar aggregated clinical trial eligibility criteria and confirmed this hypothesis using evidence from the literature. PMID:26306283

  14. Temporal patterns in coral reef, seagrass and mangrove communities from Chengue bay CARICOMP site (Colombia): 1993-2008.

    PubMed

    Rodríguez-Ramírez, Alberto; Garzón-Ferreira, Jaime; Batista-Morales, Angélica; Gil, Diego L; Gómez-López, Diana Isabel; Gómez-Campo, Kelly; López-Londoño, Tomás; Navas-Camacho, Raúl; Reyes-Nivia, María Catalina; Vega-Sequeda, Johanna

    2010-10-01

    Few monitoring programs have simultaneously assessed the dynamics of linked marine ecosystems (coral reefs, seagrass beds and mangroves) to document their temporal and spatial variability. Based on CARICOMP protocol we evaluated permanent stations in coral reefs, seagrass beds and mangroves from 1993 to 2008 in Chengue Bay at the Tayrona Natural Park, Colombian Caribbean. Overall, the studied ecosystems showed a remarkable stability pattern over the monitoring period. While there were annual variations in coral reefs (coral cover) and mangroves (litterfall) caused by hurricane Lenny in 1999, particular trends in seagrass (leaf area index and leaf productivity) appear to reflect the natural variability in this ecosystem. We suggest that monitoring sites at the three marine ecosystems had in general a healthy development in the last 16 years. Our results are critical to locally improve the management strategies (Tayrona Natural Park) and to understand the long-term dynamics of closely associated marine ecosystems in the Caribbean. PMID:21299095

  15. Spatial and Temporal Patterns of Deforestation in Rio Cajarí Extrative Reserve, Amapá, Brazil

    PubMed Central

    Funi, Claudia; Paese, Adriana

    2012-01-01

    The Rio Cajarí Extractive Reserve (RCER) is a sustainable use protected area located in Southern Amapá state, Brazil. This protected area is home to traditional agro-extractive families, but has been increasingly invaded by commercial agriculture producers. In this work, we test the hypothesis that the RCER implementation has distinctly affected spatial patterns of deforestation and rates of bare soil and secondary forest formation by the social groups occupying the protected area and its surrounding area. Detailed maps of vegetation cover and deforestation were elaborated, based on Landsat TM images from 1991, 1998, 2007 and 2008 and Linear Spectral Mixture Models. Based on an extensive fieldwork, patches were classified according to the agents causing deforestation and characterized with ten explanatory variables. A discriminant function analysis was used to identify homogeneous groups based on the data. Results show increased rates and distinct spatial patterns of deforestation by three groups: extractivists, non traditional commercial agriculture producers, and a less representative group constituted of miners, cattle and timber producers. In all analyzed dates, clearings by the extrativist community presented the highest total area and smaller average sizes and were located in close proximity to villages. Deforestation patches by the non-traditional group were exclusively associated with ombrophilous forests; these presented higher average sizes and proximity indexes, and showed increased aggregation and large cluster formation. No significant differences were observed in deforestation patterns by the three groups inside or outside the reserve. PMID:23284806

  16. Spatial and temporal patterns of stranded intertidal marine debris: is there a picture of global change?

    PubMed

    Browne, Mark Anthony; Chapman, M Gee; Thompson, Richard C; Amaral Zettler, Linda A; Jambeck, Jenna; Mallos, Nicholas J

    2015-06-16

    Floating and stranded marine debris is widespread. Increasing sea levels and altered rainfall, solar radiation, wind speed, waves, and oceanic currents associated with climatic change are likely to transfer more debris from coastal cities into marine and coastal habitats. Marine debris causes economic and ecological impacts, but understanding the scope of these requires quantitative information on spatial patterns and trends in the amounts and types of debris at a global scale. There are very few large-scale programs to measure debris, but many peer-reviewed and published scientific studies of marine debris describe local patterns. Unfortunately, methods of defining debris, sampling, and interpreting patterns in space or time vary considerably among studies, yet if data could be synthesized across studies, a global picture of the problem may be avaliable. We analyzed 104 published scientific papers on marine debris in order to determine how to evaluate this. Although many studies were well designed to answer specific questions, definitions of what constitutes marine debris, the methods used to measure, and the scale of the scope of the studies means that no general picture can emerge from this wealth of data. These problems are detailed to guide future studies and guidelines provided to enable the collection of more comparable data to better manage this growing problem. PMID:25938368

  17. Modeling self-organized spatio-temporal patterns of PIP3 and PTEN during spontaneous cell polarization

    NASA Astrophysics Data System (ADS)

    Knoch, Fabian; Tarantola, Marco; Bodenschatz, Eberhard; Rappel, Wouter-Jan

    2014-08-01

    During spontaneous cell polarization of Dictyostelium discoideum cells, phosphatidylinositol (3,4,5)-triphoshpate (PIP3) and PTEN (phosphatase tensin homolog) have been identified as key signaling molecules which govern the process of polarization in a self-organized manner. Recent experiments have quantified the spatio-temporal dynamics of these signaling components. Surprisingly, it was found that membrane-bound PTEN can be either in a high or low state, that PIP3 waves were initiated in areas lacking PTEN through an excitable mechanism, and that PIP3 was degraded even though the PTEN concentration remained low. Here we develop a reaction-diffusion model that aims to explain these experimental findings. Our model contains bistable dynamics for PTEN, excitable dynamics for PIP3, and postulates the existence of two species of PTEN with different dephosphorylation rates. We show that our model is able to produce results that are in good qualitative agreement with the experiments, suggesting that our reaction-diffusion model underlies the self-organized spatio-temporal patterns observed in experiments.

  18. SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos.

    PubMed

    Cicin-Sain, Damjan; Pulido, Antonio Hermoso; Crombach, Anton; Wotton, Karl R; Jiménez-Guri, Eva; Taly, Jean-François; Roma, Guglielmo; Jaeger, Johannes

    2015-01-01

    We present SuperFly (http://superfly.crg.eu), a relational database for quantified spatio-temporal expression data of segmentation genes during early development in different species of dipteran insects (flies, midges and mosquitoes). SuperFly has a special focus on emerging non-drosophilid model systems. The database currently includes data of high spatio-temporal resolution for three species: the vinegar fly Drosophila melanogaster, the scuttle fly Megaselia abdita and the moth midge Clogmia albipunctata. At this point, SuperFly covers up to 9 genes and 16 time points per species, with a total of 1823 individual embryos. It provides an intuitive web interface, enabling the user to query and access original embryo images, quantified expression profiles, extracted positions of expression boundaries and integrated datasets, plus metadata and intermediate processing steps. SuperFly is a valuable new resource for the quantitative comparative study of gene expression patterns across dipteran species. Moreover, it provides an interesting test set for systems biologists interested in fitting mathematical gene network models to data. Both of these aspects are essential ingredients for progress toward a more quantitative and mechanistic understanding of developmental evolution. PMID:25404137

  19. Spatio-Temporal Patterns of Beaked Whale Echolocation Signals in the North Pacific

    PubMed Central

    Baumann-Pickering, Simone; Roch, Marie A.; Brownell Jr, Robert L.; Simonis, Anne E.; McDonald, Mark A.; Solsona-Berga, Alba; Oleson, Erin M.; Wiggins, Sean M.; Hildebrand, John A.

    2014-01-01

    At least ten species of beaked whales inhabit the North Pacific, but little is known about their abundance, ecology, and behavior, as they are elusive and difficult to distinguish visually at sea. Six of these species produce known species-specific frequency modulated (FM) echolocation pulses: Baird’s, Blainville’s, Cuvier’s, Deraniyagala’s, Longman’s, and Stejneger’s beaked whales. Additionally, one described FM pulse (BWC) from Cross Seamount, Hawai’i, and three unknown FM pulse types (BW40, BW43, BW70) have been identified from almost 11 cumulative years of autonomous recordings at 24 sites throughout the North Pacific. Most sites had a dominant FM pulse type with other types being either absent or limited. There was not a strong seasonal influence on the occurrence of these signals at any site, but longer time series may reveal smaller, consistent fluctuations. Only the species producing BWC signals, detected throughout the Pacific Islands region, consistently showed a diel cycle with nocturnal foraging. By comparing stranding and sighting information with acoustic findings, we hypothesize that BWC signals are produced by ginkgo-toothed beaked whales. BW43 signal encounters were restricted to Southern California and may be produced by Perrin’s beaked whale, known only from Californian waters. BW70 signals were detected in the southern Gulf of California, which is prime habitat for Pygmy beaked whales. Hubb’s beaked whale may have produced the BW40 signals encountered off central and southern California; however, these signals were also recorded off Pearl and Hermes Reef and Wake Atoll, which are well south of their known range. PMID:24465877

  20. Catchment controls on soil moisture dynamics: from site-specific hysteresis in event responses to temporal stability of patterns

    NASA Astrophysics Data System (ADS)

    Hassler, Sibylle K.; Weiler, Markus; Blume, Theresa

    2015-04-01

    Understanding soil moisture dynamics is a prerequisite for predicting hydrological response at the hillslope and catchment scale. Soil moisture is not only determined by its input characteristics such as rainfall, its redistribution by vegetation and evapotranspiration. Catchment characteristics resulting from the interplay of geology, topography, land cover and associated soil hydraulic properties also affect the distribution, storage and transport of water in the vadose zone. Successful process predictions and appropriate hydrological model structures thus rely on a good representation of soil moisture patterns and dynamics and benefit from insights into their dependence on catchment characteristics. In a unique measurement setup at the CAOS hydrological observatory in Luxemburg (http://www.caos-project.de) we record hydro-meteorological variables at 45 sensor cluster sites. These sites are distributed across the mesoscale Attert catchment and cover three different geological units (schist, marls and sandstone), two types of land use (forest and grassland), different topographical positions (up- and downslope with north- and south-facing aspects as well as plateau and floodplain locations). At each sensor cluster, each covering approximately an area of 30 m², soil moisture is measured in three profiles at three different depths, in piezometers groundwater levels are recorded, and rain gauges collect throughfall or gross precipitation. At near-stream locations we also measure stream water levels. This extensive sensor network enables us to study the influence of geology, land use and topography on soil moisture dynamics. In this study we focus on short-term hysteretic responses related to individual rainfall events and on longer-term temporal stability of soil moisture patterns. Similarities in the hysteresis loops of rainfall/soil moisture, soil moisture/groundwater levels and soil moisture/stream water levels can give some indication of the dominant catchment controls on storage and flow path activation. Examining the temporal stability of soil moisture patterns then helps to estimate the importance of these plot- and hillslope-scale hydrological processes on catchment-scale longer-term soil moisture dynamics. First results of the event-based analyses indicate differences in thresholds of the soil moisture response to rainfall events as an effect of land use. These thresholds are also dependent on the actual soil moisture state and rainfall event characteristics. Longer-term soil moisture patterns seem to be affected by both land use and topographic controls. Further should enable a more comprehensive assessment of the catchment controls on soil moisture.

  1. Effect of temporally patterned TNF-? delivery on in vitro osteogenic differentiation of mesenchymal stem cells cultured on biodegradable polymer scaffolds.

    PubMed

    Mountziaris, Paschalia M; Dennis Lehman, E; Mountziaris, Ioannis; Sing, David C; Kasper, F Kurtis; Mikos, Antonios G

    2013-01-01

    Recent insight into the critical role of pro-inflammatory cytokines, particularly tumor necrosis factor-? (TNF-?), in bone regeneration has heralded a new direction in the design of tissue engineering constructs. Previous studies have demonstrated that continuous delivery of 50?ng/ml TNF-? to mesenchymal stem cells (MSCs) cultured on three-dimensional (3D) biodegradable electrospun poly(?-caprolactone) (PCL) microfiber meshes stimulates mineralized matrix deposition, a marker of osteogenic differentiation. Since TNF-? exhibits a biphasic pattern of expression following bone fracture in vivo, this study aimed to investigate the effects of temporal patterns of TNF-? delivery on in vitro osteogenic differentiation of MSCs cultured on 3D electrospun PCL scaffolds. MSCs were cultured for 16?days and exposed to continuous, early, intermediate, or late TNF-? delivery. To further elucidate the effects of TNF-? on osteogenic differentiation, the study design included MSCs precultured both in the presence and absence of typically required osteogenic supplement dexamethasone. Mineralized matrix deposition was not observed in constructs with dexamethasone-naïve MSCs, suggesting that TNF-? is not sufficient to trigger in vitro osteogenic differentiation of MSCs. For MSCs precultured with dexamethasone, TNF-? suppressed alkaline phosphatase activity, an early marker of osteogenic differentiation, and stimulated mineralized matrix deposition, a late stage marker of MSC osteogenic differentiation. By elucidating the impact of temporal variations in TNF-? delivery on MSC osteogenic differentiation, our results offer insight into the regenerative mechanism of TNF-? and provide the design parameters for a novel tissue engineering strategy that rationally controls TNF-? signaling to stimulate bone regeneration. PMID:23746285

  2. Daily temporal patterns of heroin and cocaine use and craving: relationship with business hours regardless of actual employment status.

    PubMed

    Phillips, Karran A; Epstein, David H; Preston, Kenzie L

    2013-10-01

    Real-time monitoring of behavior using Ecological Momentary Assessment (EMA) has provided detailed data about daily temporal patterns of craving and use in cigarette smokers. We have collected similar data from a sample of cocaine and heroin users. Here we analyzed it in the context of its relationship with a societal construct of daily temporal organization: 9-to-5 business hours. In a 28-week prospective study, 112 methadone-maintained polydrug-abusing individuals initiated an electronic-diary entry and provided data each time they used cocaine, heroin, or both during weeks 4 to 28. EMA data were collected for 10,781 person-days and included: 663 cocaine-craving events, 710 cocaine-use events, 288 heroin-craving events, 66 heroin-use events, 630 craving-both-drugs events, and 282 use-of-both-drugs events. At baseline, 34% of the participants reported full-time employment in the preceding 3-year period. Most participants' current employment status fluctuated throughout the study. In a generalized linear mixed model (SAS Proc Glimmix), cocaine use varied by time of day relative to business hours (p<0.0001) and there was a significant interaction between Day of the Week and Time Relative to Business Hours (p<0.002) regardless of current work status. Cocaine craving also varied by time of day relative to business hours (p<0.0001), however, there was no significant interaction between Day of the Week and Time Relative to Business Hours (p=.57). Heroin craving and use were mostly reported during business hours, but data were sparse. Cocaine craving is most frequent during business hours while cocaine use is more frequent after business hours. Cocaine use during business hours, but not craving, seems suppressed on most weekdays, but not weekends, suggesting that societal conventions reflected in business hours influence drug-use patterns even in individuals whose daily schedules are not necessarily dictated by employment during conventional business hours. PMID:23770647

  3. Temporal patterns among meiofauna and macrofauna taxa related to changes in sediment geochemistry at an abyssal NE Atlantic site

    NASA Astrophysics Data System (ADS)

    Galéron, J.; Sibuet, M.; Vanreusel, A.; Mackenzie, K.; Gooday, A. J.; Dinet, A.; Wolff, G. A.

    Two major size classes of the sediment community, meiofauna and macrofauna, and four classes of lipid compounds, fatty acids, alkanes, alcohols and sterols, were investigated using multicorer and USNEL boxcorer samples, collected during six cruises over a two year period (September 1996 to September-October 1998), at the Porcupine Abyssal Plain (? 48° 50?N 16° 30?W, 4850 m depth) within the framework of the MAST 3 BENGAL project. This site was known to be subject to seasonality in the input of organic matter to the seafloor. Results are given for each faunal size class in terms of taxonomic structure at the level of phylum, class or order, depending on the taxon, and for the dominant faunal components in terms of density and vertical distribution. For each lipid compound class, results are given in concentration and vertical distribution. The taxonomic structure of each size class did not change within the study period. Total meiofaunal and macrofaunal densities were particularly high, probably reflecting the high quantity and quality of organic matter inputs to the site. The dominant components of the two size classes presented different temporal patterns in their responses to changes in their environment. Populations of meiofaunal species, a foraminiferan and an opheliid polychaete, which inhabit the surface or sub-surface of sediment and feed on phytodetritus, responded with a rapid increase in abundance to a pulse of organic input in summer 1996. The macrofaunal polychaetes showed a lagged response to the same event by slowly increasing in density. Other components of the sediment community, that can live deeper in the sediment, moved down the sediment column, in response to 1) the impoverishment and bioturbation of the surface layer, and 2) the downward mixing of organic matter in the sediment by larger organisms. In this study, different temporal patterns were demonstrated for the first time in different size classes of the sediment community, and in the biological and environmental parameters that were studied simultaneously.

  4. Multielemental analysis of tree rings: temporal accumulation patterns and relationships with air pollution

    SciTech Connect

    Baes, C.F. III; McLaughlin, S.B.

    1983-01-01

    Short-leaf pine (Pinus echinata) tree rings collected in East Tennessee showed steadily increasing concentrations of Al, Cd, Cu, Fe, Mn, Mo, Ti, and Zn over the past 20 to 25 years. In part, these increasing concentrations result from recent declines in tree growth rate, but when corrected for variations in growth rate, annual accumulations of many of these metals in xylem tissue has increased in recent years. The largest concentration increases with time were observed in rings from trees downwind of the 1200 MW(e) generating Kingston steam plant, which burns 4 x 10/sup 9/ kg coal per year. Trace metals concentrations in cambial tissues were found to be as high as ten times those in the most recently formed xylem, and concentrations of Al, Cd, Mn, and Zn are near levels that have been associated with toxic effects when found in above-ground tissues of herbaceous plants. In trees sampled in the Great Smoky Mountains National Park (GSMNP) there was a period of suppressed growth and increased iron concentration in rings formed between 1863 and 1912. During this time period 88 km upwind, smelting of iron and copper sulfide ores was occurring at the Copper Basin (Copperhill), near Ducktown, Tennessee. Associated with this smelting were large uncontrolled releases of SO/sub 2/ which killed all vegetation within 20 km of the Copper Basin. The patterns of growth suppression and iron accumulation observed in the GSMNP trees correspond remarkably well to the initiation of smelting operations in 1854, maximum uncontrolled SO/sub 2/ emissions in 1895, and the reduction in SO/sub 2/ emissions mandated by the US Supreme Court in 1908. This historical pattern and the widespread occurrence of similar patterns of growth suppression and increased iron concentrations in tree rings since the late 1950s provide strong inferential evidence of tree response to SO/sub 2/ deposition. 36 references, 3 figures, 1 table.

  5. Spatial and temporal patterns of apparent electrical conductivity: DUALEM vs. Veris sensors for monitoring soil properties.

    PubMed

    Serrano, João; Shahidian, Shakib; Silva, José Marques da

    2014-01-01

    The main objective of this study was to compare two apparent soil electrical conductivity (ECa) sensors (Veris 2000 XA and DUALEM 1S) for mapping variability of soil properties in a Mediterranean shallow soil. This study also aims at studying the effect of soil cover vegetation on the ECa measurement by the two types of sensors. The study was based on two surveys carried out under two very different situations: in February of 2012, with low soil moisture content (SMC) and with high and differentiated vegetation development (non grazed pasture), and in February of 2013, with high SMC and with short and relatively homogeneous vegetation development (grazed pasture). The greater temporal stability of Veris sensor, despite the wide variation in the SMC and vegetation ground cover indicates the suitability of using this sensor for monitoring soil properties in permanent pastures. The survey carried out with the DUALEM sensor in 2012 might have been affected by the presence of a 0.20 m vegetation layer at the soil surface, masking the soil properties. These differences should be considered in the selection of ECa sensing systems for a particular application. PMID:24915182

  6. Assessing the temporal stability of spatial patterns of soil apparent electrical conductivity using geophysical methods

    NASA Astrophysics Data System (ADS)

    De Caires, Sunshine A.; Wuddivira, Mark N.; Bekele, Isaac

    2014-10-01

    Cocoa remains in the same field for decades, resulting in plantations dominated with aging trees growing on variable and depleted soils. We determined the spatio-temporal variability of key soil properties in a (5.81 ha) field from the International Cocoa Genebank, Trinidad using geophysical methods. Multi-year (2008-2009) measurements of apparent electrical conductivity at 0-0.75 m (shallow) and 0.75-1.5 m (deep) were conducted. Apparent electrical conductivity at deep and shallow gave the strongest linear correlation with clay-silt content (R = 0.67 and R = 0.78, respectively) and soil solution electrical conductivity (R = 0.76 and R = 0.60, respectively). Spearman rank correlation coefficients ranged between 0.89-0.97 and 0.81- 0.95 for apparent electrical conductivity at deep and shallow, respectively, signifying a strong linear dependence between measurement days. Thus, in the humid tropics, cocoa fields with thick organic litter layer and relatively dense understory cover, experience minimal fluctuations in transient properties of soil water and temperature at the topsoil resulting in similarly stable apparent electrical conductivity at shallow and deep. Therefore, apparent electrical conductivity at shallow, which covers the depth where cocoa feeder roots concentrate, can be used as a fertility indicator and to develop soil zones for efficient application of inputs and management of cocoa fields.

  7. Spatial and Temporal Patterns of Apparent Electrical Conductivity: DUALEM vs. Veris Sensors for Monitoring Soil Properties

    PubMed Central

    Serrano, João; Shahidian, Shakib; da Silva, José Marques

    2014-01-01

    The main objective of this study was to compare two apparent soil electrical conductivity (ECa) sensors (Veris 2000 XA and DUALEM 1S) for mapping variability of soil properties in a Mediterranean shallow soil. This study also aims at studying the effect of soil cover vegetation on the ECa measurement by the two types of sensors. The study was based on two surveys carried out under two very different situations: in February of 2012, with low soil moisture content (SMC) and with high and differentiated vegetation development (non grazed pasture), and in February of 2013, with high SMC and with short and relatively homogeneous vegetation development (grazed pasture). The greater temporal stability of Veris sensor, despite the wide variation in the SMC and vegetation ground cover indicates the suitability of using this sensor for monitoring soil properties in permanent pastures. The survey carried out with the DUALEM sensor in 2012 might have been affected by the presence of a 0.20 m vegetation layer at the soil surface, masking the soil properties. These differences should be considered in the selection of ECa sensing systems for a particular application. PMID:24915182

  8. Temporal Patterns of Happiness and Information in a Global Social Network: Hedonometrics and Twitter

    PubMed Central

    Dodds, Peter Sheridan; Harris, Kameron Decker; Kloumann, Isabel M.; Bliss, Catherine A.; Danforth, Christopher M.

    2011-01-01

    Individual happiness is a fundamental societal metric. Normally measured through self-report, happiness has often been indirectly characterized and overshadowed by more readily quantifiable economic indicators such as gross domestic product. Here, we examine expressions made on the online, global microblog and social networking service Twitter, uncovering and explaining temporal variations in happiness and information levels over timescales ranging from hours to years. Our data set comprises over 46 billion words contained in nearly 4.6 billion expressions posted over a 33 month span by over 63 million unique users. In measuring happiness, we construct a tunable, real-time, remote-sensing, and non-invasive, text-based hedonometer. In building our metric, made available with this paper, we conducted a survey to obtain happiness evaluations of over 10,000 individual words, representing a tenfold size improvement over similar existing word sets. Rather than being ad hoc, our word list is chosen solely by frequency of usage, and we show how a highly robust and tunable metric can be constructed and defended. PMID:22163266

  9. Spatio-temporal patterns of stratification on the Northwest Atlantic shelf

    NASA Astrophysics Data System (ADS)

    Li, Yun; Fratantoni, Paula S.; Chen, Changsheng; Hare, Jonathan A.; Sun, Yunfang; Beardsley, Robert C.; Ji, Rubao

    2015-05-01

    A spatially explicit stratification climatology is constructed for the Northwest Atlantic continental shelf using daily averaged hydrographic fields from a 33-year high-resolution, data-assimilated reanalysis dataset. The high-resolution climatology reveals considerable spatio-temporal heterogeneity in seasonal variability with strong interplay between thermal and haline processes. Regional differences in the magnitude and phasing of the seasonal cycle feature earlier development/breakdown in the Middle Atlantic Bight (MAB) and larger peaks on the shelf than in the Gulf of Maine (GoM). The relative contribution of the thermal and haline components to the overall stratification is quantified using a novel diagram composed of two key ratios. The first relates the vertical temperature gradient to the vertical salinity gradient, and the second relates the thermal expansion coefficient to the haline contraction coefficient. Two distinct regimes are identified: the MAB region is thermally-dominated through a larger portion of the year, whereas the Nova Scotian Shelf and the eastern GoM have a tendency towards haline control during the year. The timing of peak stratification and the beginning/end of thermally-positive and thermally-dominant states are examined. Their spatial distributions indicate a prominent latitudinal shift and regionality, having implications for the seasonal cycle of ecosystem dynamics and its interannual variability.

  10. Macroinvertebrates Associated With Dikes in the Mississippi River: Spatial and Temporal Patterns

    NASA Astrophysics Data System (ADS)

    Battle, J.; Jackson, J. K.; Sweeney, B. W.

    2005-05-01

    Fine sediments and rocky substrates are dominant benthic macroinvertebrate habitats in the Mississippi River. We sampled macroinvertebrates in fine sediments downstream of wing dikes on four occasions and on rocks upstream of wing dikes on two occasions. We identified 65 taxa in the fine sediments and 50 taxa on the rocks, with only 26 taxa found in both habitats. Presumably, assemblage differences reflect flow and substrate differences. Assemblages in both habitats exhibited considerable temporal variability. Macroinvertebrate densities in the fine sediments ranged from 3737 to 8706 individuals m-2 y-1, with oligochaetes representing 77-92% of total density. Macroinvertebrate density on the rocks ranged from 57,770 to 162,966 individuals m-2 y-1, with hydropsychid caddisflies (Hydropsyche bidens/orris and Potamyia flava) representing 82-97% of total density. A literature survey found that macroinvertebrate assemblages in large rivers of the Mississippi River Basin (e.g., Upper and Lower Mississippi, Illinois, Ohio, and Missouri Rivers) tend to be dominated by a few taxa. Because of this, we believe that traditional approaches to describing community structure (e.g., species richness, relative abundance) in biological assessments may be insensitive to subtle differences among large river faunas.

  11. Spatio-temporal patterns of pesticide residues in the Turia and Júcar Rivers (Spain).

    PubMed

    Ccanccapa, Alexander; Masiá, Ana; Andreu, Vicente; Picó, Yolanda

    2016-01-01

    A study was conducted on the occurrence of 50 pesticides in water and sediments of Turia and Júcar Rivers (Valencian Community, Eastern Spain) for a period of two consecutive years each, 2010/2011 and 2012/2013, respectively to assess the contribution of agriculture and urban activities on pesticide pollution. The results showed that mean concentrations of pesticides ranged from temporal variations also indicated a strong relation of pesticide concentrations with hydrology, the higher the river flow, the higher number and frequency of pesticides but at lower concentrations. On the contrary, at lower river flows higher pesticide concentrations were detected. The risk assessment for aquatic biota pointed out that organophosphorus and fungicides are a threat to fish and daphnia and herbicides and fungicides are hazards for algae. Thus, the strict control of pesticide concentrations is important to preserve the aquatic ecosystems health. PMID:26118860

  12. Spatial and temporal pattern of erosion in the Three Rivers Region, southeastern Tibet

    NASA Astrophysics Data System (ADS)

    Yang, Rong; Fellin, Maria Giuditta; Herman, Frédéric; Willett, Sean D.; Wang, Wei; Maden, Colin

    2016-01-01

    Convergence and collision between India and Eurasia have produced the Tibetan Plateau, which stands 5 km high over a region of 3 million km2. Its southeastern margin lies in the restraining bend between the Sichuan basin and the Eastern Himalayan Syntaxis. In this region three parallel rivers, the Salween, the Mekong and the Yangtze, carve gorges up to 3 km deep. Along the longitudinal profiles, large-scale knickzones, defined by very high steepness, correspond to the gorges of the Salween and Mekong. The Yangtze, instead, has a nearly linear profile upstream from its first big bend. New low-temperature thermochronometric data reveal a complex pattern of erosion in the Three Rivers Region. From the Salween in the west to the Yangtze in the east the magnitude and rate of erosion decrease. From south-to-north erosion rates exhibit variable gradients in space and time. Along the Salween and the Mekong a northward increase of erosion rate is followed by a decrease with additional distance to the north. Variations of erosion rate in time are characterized by a deceleration along the Salween and a general deceleration with local acceleration along the Mekong. This pattern, together with river profile analysis, is best explained by active coupling between tectonics and river incision related to the indentation and northward migration of the corner of the Indian continent.

  13. Temporal dynamics of salt crust patterns on a sodic playa: implications for aerodynamic roughness and dust emission potential

    NASA Astrophysics Data System (ADS)

    Nield, Joanna; Bryant, Robert; Wiggs, Giles; King, James; Thomas, David; Eckardt, Frank; Washington, Richard

    2015-04-01

    Salt pans (or playas) are common in arid environments and can be major sources of windblown mineral dust, but there are uncertainties associated with their dust emission potential. These landforms typically form crusts which modify both their erosivity and erodibility by limiting sediment availability, modifying surface and aerodynamic roughness and limiting evaporation rates and sediment production. Here we show the relationship between seasonal surface moisture change and crust pattern development on part of the Makgadikgadi Pans of Botswana (a Southern Hemisphere playa that emits significant dust), based on both remote-sensing and field surface and atmospheric measurements. We use high resolution (sub-cm) terrestrial laser scanning (TLS) surveys over weekly, monthly and annual timescales to accurately characterise crustal ridge thrusting and collapse. Ridge development can change surface topography as much as 30 mm/week on fresh pan areas that have recently been reset by flooding. The corresponding change aerodynamic roughness can be as much as 3 mm/week. At the same time, crack densities across the surface increase and this raises the availability of erodible fluffy, low density dust source sediment stored below the crust layer. We present a conceptual model accounting for the driving forces (subsurface, surface and atmospheric moisture) and feedbacks between these and surface shape that lead to crust pattern trajectories between highly emissive degraded surfaces and less emissive ridged or continuous crusts. These findings improve our understanding of temporal changes in dust availability and supply from playa source regions.

  14. Spatial and temporal patterns of stink bugs (Hemiptera: Pentatomidae) in wheat.

    PubMed

    Reay-Jones, F P F

    2010-06-01

    A 2-yr study was conducted in South Carolina wheat fields to describe spatial and temporal dynamics of stink bugs sampled with sweep nets. In 2008, the main phytophagous species were Euschistus servus (Say) (35.8, 36.7%), Oebalus pugnax (F.) (35.0, 6.0%), Nezara viridula L., (15.2, 46.3%), and Thyanta custator (F.) (14.0, 10.5%) for adults and nymphs, respectively. In 2009, the main phytophagous species were O. pugnax (39.8, 37.8%), E. servus (38.4, 30.0%), N. viridula (14.6, 29.5%), and T. custator (6.8, 2.8%). chi(2) goodness-of-fit tests indicated that all species (both adults and nymphs) had observed distributions that did not match the Poisson distribution. Indices of dispersion (I(D )) across sampling dates were significantly >1 for all species and life stages, also suggesting a nonrandom distribution. Slopes of Taylor's power law were significantly greater (P < 0.05) than a value of 1 for only adult O. pugnax and nymph T. custator. Coefficients beta of patchiness regressions were significantly >1 in all cases except for E. servus adults and T. custator nymphs. The inverted distance weighted interpolation method showed considerable levels of spatial variability in densities within fields. Sampling along the edge of fields showed a significant distance from field border effect (P < 0.05) on all adults in both years except for N. viridula. High densities in wheat adjacent to a susceptible crop such as corn suggests that localized control methods in wheat may be effective in mitigation of stink bugs and damage in corn. PMID:20550810

  15. Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.

    PubMed

    Klatt, Christian G; Liu, Zhenfeng; Ludwig, Marcus; Kühl, Michael; Jensen, Sheila I; Bryant, Donald A; Ward, David M

    2013-09-01

    Filamentous anoxygenic phototrophs (FAPs) are abundant members of microbial mat communities inhabiting neutral and alkaline geothermal springs. Natural populations of FAPs related to Chloroflexus spp. and Roseiflexus spp. have been well characterized in Mushroom Spring, where they occur with unicellular cyanobacteria related to Synechococcus spp. strains A and B'. Metatranscriptomic sequencing was applied to the microbial community to determine how FAPs regulate their gene expression in response to fluctuating environmental conditions and resource availability over a diel period. Transcripts for genes involved in the biosynthesis of bacteriochlorophylls (BChls) and photosynthetic reaction centers were much more abundant at night. Both Roseiflexus spp. and Chloroflexus spp. expressed key genes involved in the 3-hydroxypropionate (3-OHP) carbon dioxide fixation bi-cycle during the day, when these FAPs have been thought to perform primarily photoheterotrophic and/or aerobic chemoorganotrophic metabolism. The expression of genes for the synthesis and degradation of storage polymers, including glycogen, polyhydroxyalkanoates and wax esters, suggests that FAPs produce and utilize these compounds at different times during the diel cycle. We summarize these results in a proposed conceptual model for temporal changes in central carbon metabolism and energy production of FAPs living in a natural environment. The model proposes that, at night, Chloroflexus spp. and Roseiflexus spp. synthesize BChl, components of the photosynthetic apparatus, polyhydroxyalkanoates and wax esters in concert with fermentation of glycogen. It further proposes that, in daytime, polyhydroxyalkanoates and wax esters are degraded and used as carbon and electron reserves to support photomixotrophy via the 3-OHP bi-cycle. PMID:23575369

  16. Space Technology 5 Observations of Short-Period ULF Waves: Temporal and Spatial Patterns

    NASA Astrophysics Data System (ADS)

    Westerman, A.; Otto, N.; Engebretson, M.; Slavin, J.; Le, G.; Strangeway, R.

    2007-05-01

    The three microsatellites that comprise the Space Technology 5 (ST5) mission were launched into a dawn-dusk, 300 x 4500 km sun-synchronous orbit in a "pearls-on-a-string" configuration, with spacings ranging from >5000 km down to under 50 km. Fluxgate magnetometers on board each spacecraft collected vector magnetic field data from March 26 through June 30, 2006. In this study we present the first results of a survey of ULF waves in the Pc 1-2 frequency range, with a total of 105 events, recorded by these spacecraft. Waves in the middle magnetosphere (L from 4 to 7) were observed to have a nearly uniform diurnal occurrence rate. At higher latitudes (L > 7) occurrence was maximum in the dawn-noon sector, consistent with stimulation by magnetospheric compressions. Only five wave events were observed at L < 4. The temporal occurrence distribution roughly followed the occurrence of Pc 1-2 activity recorded at Halley, Antarctica (L = 4.5), in that the number and intensity of events was increased during magnetospheric compressions, during the recovery phase of magnetic storms, and during one extended interval of disturbed but only modestly negative Dst. Somewhat surprisingly, only eight events were observed by all three spacecraft as they passed over similar L shells, and only 14 events, including two each on three days, were observed by two spacecraft. Nearly all of these events occurred during storm recovery. We interpret the lack of more multi-spacecraft observations as indicating the highly localized nature of regions in the magnetosphere that become unstable to electromagnetic ion cyclotron instabilities.

  17. Spatial and temporal patterns of air concentrations of mercury in Western North America 1998-present

    NASA Astrophysics Data System (ADS)

    Weiss-Penzias, P. S.; Eckley, C.; Parsons, M.; Gustin, M. S.; Jaffe, D. A.; Morris, K.; Obrist, D.; Mintz, R.; Steffen, A.; Cole, A. S.; Perry, K. D.; Rothenberg, S. E.; Gay, D.; Schmeltz, D.

    2013-12-01

    The Western North America Mercury Synthesis (WNAMS) is a collaborative effort to integrate information on mercury (Hg) emissions, transport and deposition, as well as methyl mercury (MeHg) production, bioaccumulation, and risk across the Western U.S., Canada, and Mexico. Air concentrations of Hg which include gaseous elemental (GEM), gaseous oxidized (GOM) and particulate (PBM) taken with the Tekran system since 1998, were evaluated with the goal of identifying spatial and temporal trends as well as information on sources, sinks, and processes. Twenty-eight sites spanning the region from the Yukon to Southern California and east to Utah have records of GEM, while GOM and PBM were measured at 13 and 10 sites respectively. The mean concentration of GEM across all sites was 1.55 ng m-3 and ranged between 1.22 and 2.55 ng m-3 at Whistler, British Columbia and Wells, Nevada, respectively. In general the sites in the desert areas of Nevada, Idaho and Utah had the highest GEM concentrations, probably due to local geogenic sources. Despite uncertainties associated with GOM and PBM measurements there were some observed trends. Mean GOM concentrations were generally correlated with site elevation, being highest at Great Basin National Park, Nevada (63 pg m-3, 2080 m asl) and lowest at Elkhorn Slough, California (< 1 pg m-3, 20 m asl). Diel variations of GEM were consistent with midday maxima morning minima at most sites except for the aforementioned desert areas which had nighttime maxima and afternoon minima. GOM displayed afternoon maxima at all sites except mountain/ridge-top sites which showed nighttime maxima. Out of six sites with > 5 years of GEM measurements, five sites displayed negative trends in annually averaged concentrations ranging from 0.02 to 0.05 ng m-3 y-1.

  18. Ozone in Rural Nevada: Investigating spatio-temporal patterns and source regions contributing to elevated concentrations

    NASA Astrophysics Data System (ADS)

    Fine, Rebekka

    In 1993, an ozone (O3) monitoring site was established at Great Basin National Park (GBNP), located in rural eastern Nevada. Analyses of data from this site indicate that compliance with a revised National Ambient Air Quality Standard (NAAQS) ?70 ppb will be challenging. With the exception of GBNP, ambient O3 monitoring has been limited to the areas in and around the 3 urban areas of Nevada. The objectives of the research presented here were to (1) characterize spatial and temporal trends in ambient O 3 across rural Nevada, and (2) identify source regions contributing to elevated O3 in rural Nevada. To pursue these objectives, a network of 13 monitoring sites was established throughout rural Nevada over a period ranging from July 2011 to June 2014. Data from 6 sites during the first 2 years of measurement indicate that maximum MDA8 O3 ranged from 68 to 80 ppb. Ambient O3 measured at GBNP was significantly higher than that measured at other rural Nevada sites. Back trajectory analyses, vertical profile measurements from aircrafts and sondes, statistical analyses, as well as results of regional and global models were employed to identify sources contributing to elevated O3. Our analyses indicate that regional and global sources contribute to O3 at surface sites throughout rural Nevada and that the high elevation and complex terrain make the State ideally situated to intercept air from the free troposphere and thus, pollution derived from complex sources included long-range transport, stratospheric intrusions, and regional emissions. Our data suggest that regional and global cooperation will be necessary to comply with a revised NAAQS in rural Nevada.

  19. Multispecies spawning sites for fishes on a low-latitude coral reef: spatial and temporal patterns.

    PubMed

    Claydon, J A B; McCormick, M I; Jones, G P

    2014-04-01

    Spawning sites used by one or more species were located by intensively searching nearshore coral reefs of Kimbe Bay (New Britain, Papua New Guinea). Once identified, the spawning sites were surveyed repeatedly within fixed 5?m radius circular areas, for ?>?2000 h of observations ranging from before dawn to after dusk spanning 190 days between July 2001 and May 2004. A total of 38 spawning sites were identified on the seven study reefs distributed at an average of one site every 60?m of reef edge. Pelagic spawning was observed in 41 fish species from six families. On three intensively studied reefs, all 17 spawning sites identified were used by at least three species, with a maximum of 30 different species observed spawning at a single site. Spawning was observed during every month of the study, on all days of the lunar month, at all states of the tide and at most hours of the day studied. Nevertheless, the majority of species were observed spawning on proportionately more days from December to April, on more days around the new moon and in association with higher tides. The strongest temporal association, however, was with species-specific diel spawning times spanning?

  20. Spatio-temporal patterns of radon along the western fault of the Dead Sea Transform, NW Dead Sea

    NASA Astrophysics Data System (ADS)

    Steinitz, Gideon; Piatibratova, Oksana

    2014-05-01

    An extensive and strong radon anomaly is developed along the western boundary fault of the Dead Sea Transform in the NW sector of the Dead Sea. The anomaly, extending 15-20 km north-south, is developed in the gravel to the east and adjacent to the exposed boundary fault. The highest radon values occur in proximity to the fault scarp composed of Mesozoic carbonates. Using gamma and alpha detectors radon (Rn-222) is measured in the gravel at several sites, at depths of 1.5 -3 meters, at a time resolution of <1 hour. Relative to the main tectonic element these sites are located at a) on-fault positions, in the range of 1-30 meters to the east of the fault scarp, and b) off-fault positions located 600 and 800 meters east of the fault. The large variability of radon encountered entails systematic spatial and temporal patterns. Prominent signals occur in the annual and daily periodicity bands, as well as non-periodic multi-day variations (2-20 days). A multi-year trend is indicated at one site. Modulations occur among the different signal types. The annual variation influences the multi-day and the daily signals, and the multi-day variation is modulating the daily signal. The overall variation patterns as well modulations between types of signals differ among sites. These are manifested primarily as dissimilar temporal variation patterns that occur at on-fault and off-fault sites. On-fault sites exhibit very prominent annual variations and relatively weak signals in the daily band. Off-fault sites exhibit mild to weak annual variation and relatively intense signals in the diurnal band. Within the diurnal periodicity band the relative amplitude of the S1 and S2 periodicities differs among the on- and off-fault sites. Decomposition of the signal types and inter-site comparison shows that: a) significantly different signal patterns occur perpendicular to the fault trace, at on- and off-fault positions which are several hundred meters apart; b) similar patterns, especially of the multi-day signals, are observed from sites 3 to15 km apart at on-fault positions. Bearing in mind that: a) semi-confined conditions exists at 2.5-3 meter depth; b) the uniformity of the host rock (gravel) at the sites; c) the uniformity of the local climatic conditions, and d) the similar emplacement of the sensors - it is concluded that: 1) the patterns and their modulations are similar to those encountered in experimental simulations using radon within confined volumes; 2) above surface atmospheric influences can be excluded as drivers of the signals; 3) a remote above surface influence probably drives the periodic components of nuclear radiation from radon in the annual and diurnal bands; 4) the latter signals as well as the multi-day signals are modified and inter-modulated by near field geological (static) and geophysical (dynamic) influences. So far the nature of these near field influences is unidentified. Still systematically different influences are operating at on-fault versus off-fault positions. If verified then a new aspect in geodynamic research is implied.

  1. Temporal patterns of methane emissions from wetland rice fields treated by different modes of N application

    NASA Astrophysics Data System (ADS)

    Wassmann, R.; Neue, H. U.; Lantin, R. S.; Aduna, J. B.; Alberto, M. C. R.; Andales, M. J.; Tan, M. J.; van der Gon, H. A. C. Denier; Hoffmann, H.; Papen, H.; Rennenberg, H.; Seiler, W.

    1994-08-01

    Methane emission rates from wetland rice fields were determined in Los Baños (Philippines) using an automatic system that allows continuous measurements over time. Methane emission was monitored in an irrigated Aquandic Epiaqualf planted to rice cultivar IR72. Urea fertilizer was applied using four modes: (1) broadcast 10 days after transplanting, (2) broadcast at transplanting, (3) broadcast and incorporated at final harrowing, and (4) deep placement as sulfur-coated granules. The treatments were laid out in a randomized complete block design with four replicates. Measurements were done in the 1991 wet season, 1992 dry season (four treatments), and the 1992 wet season (only treatment 3). Methane emission rates from the experimental plots showed pronounced seasonal and diel variations. The diel pattern of methane emission rates followed a consistent pattern, with highest rates observed in the early afternoon and lowest rates in the early morning. Methane emission rate was generally highest at the ripening stage. The average methane emission rate during the 1992 dry season (190 mg CH4 m-2 d-1) exceeded the average flux rates of the 1992 wet season (79 mg CH4 m-2 d-1) by a factor of 2.4. The total methane emitted from these flooded rice fields amounted to 19 g CH4 m-2 in the dry season with rice yields of 5.2-6.3 t ha-1 and 7 g CH4 m-2 in the wet season with rice yields of 2.4-3.3 t ha-1 regardless of the mode of N application. Significant amounts corresponding to 20% of the methane released under waterlogged conditions were released when the soil was drained after harvest. Emission rates increased sharply when the floodwater receded and macropores started to drain. Emission of methane stopped only when the soil became fully aerated.

  2. Hyperbaric oxygenation alters temporal expression pattern of superoxide dismutase 2 after cortical stab injury in rats

    PubMed Central

    Parabucki, Ana B.; Boži?, Iva D.; Bjelobaba, Ivana M.; Lavrnja, Irena C.; Brki?, Predrag D.; Jovanovi?, Tomislav S.; Savi?, Danijela Z.; Stojiljkovi?, Mirjana B.; Pekovi?, Sanja M.

    2012-01-01

    Aim To evaluate the effect of hyperbaric oxygen therapy (HBOT) on superoxide dismutase 2 (SOD2) expression pattern after the cortical stab injury (CSI). Methods CSI was performed on 88 male Wistar rats, divided into control, sham, lesioned, and HBO groups. HBOT protocol was the following: pressure applied was 2.5 absolute atmospheres, for 60 minutes, once a day for consecutive 3 or 10 days.? The pattern of SOD2 expression and cellular localization was analyzed using real-time polymerase chain reaction, Western blot, and double-label fluorescence immunohistochemistry. Neurons undergoing degeneration were visualized with Fluoro-Jade®B. Results CSI induced significant transient increase in SOD2 protein levels at day 3 post injury, which was followed by a reduction toward control levels at post-injury day 10. At the same time points, mRNA levels for SOD2 in the injured cortex were down-regulated. Exposure to HBO for 3 days considerably down-regulated SOD2 protein levels in the injured cortex, while after 10 days of HBOT an up-regulation of SOD2 was observed. HBOT significantly increased mRNA levels for SOD2 at both time points compared to the corresponding L group, but they were still lower than in controls. Double immunofluorescence staining revealed that 3 days after CSI, up-regulation of SOD2 was mostly due to an increased expression in reactive astrocytes surrounding the lesion site. HBOT attenuated SOD2 expression both in neuronal and astroglial cells. Fluoro-Jade®B labeling showed that HBOT significantly decreased the number of degenerating neurons in the injured cortex. Conclusion HBOT alters SOD2 protein and mRNA levels after brain injury in a time-dependent manner. PMID:23275324

  3. Genetic evidence reveals temporal change in hybridization patterns in a wild baboon population.

    PubMed

    Tung, J; Charpentier, M J E; Garfield, D A; Altmann, J; Alberts, S C

    2008-04-01

    The process and consequences of hybridization are of interest to evolutionary biologists because of the importance of hybridization in understanding reproductive isolation, speciation, and the influence of introgression on population genetic structure. Recent studies of hybridization have been enhanced by the advent of sensitive, genetic marker-based techniques for inferring the degree of admixture occurring within individuals. Here we present a genetic marker-based analysis of hybridization in a large-bodied, long-lived mammal over multiple generations. We analysed patterns of hybridization between yellow baboons (Papio cynocephalus) and anubis baboons (Papio anubis) in a well-studied natural population in Amboseli National Park, Kenya, using genetic samples from 450 individuals born over the last 36 years. We assigned genetic hybrid scores based on genotypes at 14 microsatellite loci using the clustering algorithm implemented in STRUCTURE 2.0, and assessed the robustness of these scores by comparison to pedigree information and through simulation. The genetic hybrid scores showed generally good agreement with previous morphological assessments of hybridity, but suggest that genetic methods may be more sensitive for identification of low levels of hybridity. The results of our analysis indicate that the proportion of hybrids in the Amboseli population has grown over time, but that the average proportion of anubis ancestry within hybrids is gradually decreasing. We argue that these patterns are probably a result of both selective and nonselective processes, including differences in the timing of life-history events for hybrid males relative to yellow baboon males, and stochasticity in long-distance dispersal from the source anubis population into Amboseli. PMID:18363664

  4. Classifying acoustic signals into phoneme categories: average and dyslexic readers make use of complex dynamical patterns and multifractal scaling properties of the speech signal

    PubMed Central

    2015-01-01

    Several competing aetiologies of developmental dyslexia suggest that the problems with acquiring literacy skills are causally entailed by low-level auditory and/or speech perception processes. The purpose of this study is to evaluate the diverging claims about the specific deficient peceptual processes under conditions of strong inference. Theoretically relevant acoustic features were extracted from a set of artificial speech stimuli that lie on a /bAk/-/dAk/ continuum. The features were tested on their ability to enable a simple classifier (Quadratic Discriminant Analysis) to reproduce the observed classification performance of average and dyslexic readers in a speech perception experiment. The ‘classical’ features examined were based on component process accounts of developmental dyslexia such as the supposed deficit in Envelope Rise Time detection and the deficit in the detection of rapid changes in the distribution of energy in the frequency spectrum (formant transitions). Studies examining these temporal processing deficit hypotheses do not employ measures that quantify the temporal dynamics of stimuli. It is shown that measures based on quantification of the dynamics of complex, interaction-dominant systems (Recurrence Quantification Analysis and the multifractal spectrum) enable QDA to classify the stimuli almost identically as observed in dyslexic and average reading participants. It seems unlikely that participants used any of the features that are traditionally associated with accounts of (impaired) speech perception. The nature of the variables quantifying the temporal dynamics of the speech stimuli imply that the classification of speech stimuli cannot be regarded as a linear aggregate of component processes that each parse the acoustic signal independent of one another, as is assumed by the ‘classical’ aetiologies of developmental dyslexia. It is suggested that the results imply that the differences in speech perception performance between average and dyslexic readers represent a scaled continuum rather than being caused by a specific deficient component. PMID:25834769

  5. Genetic evidence for spatio-temporal changes in the dispersal patterns of two sympatric African colobine monkeys.

    PubMed

    Minhós, Tania; Nixon, Elizabeth; Sousa, Cláudia; Vicente, Luis M; da Silva, Maria Ferreira; Sá, Rui; Bruford, Michael W

    2013-03-01

    Western black-and-white colobus and Temmink's red colobus are two forest-dependent African primates with similar ecological requirements, often found in sympatry. Their most striking difference lies in their social system: black-and-white colobus live in small groups with mainly male-mediated dispersal but where females can also disperse, whereas red colobus live in larger groups with males described as philopatric. To investigate whether genetic evidence supports the reported patterns of dispersal based on observational data, we examined eight black-and-white and six red colobus social groups from Cantanhez National Park, Guinea-Bissau. Microsatellite markers revealed a lack of sex-biased dispersal for black-and-white colobus. Gene flow, mainly mediated by females, better explained the genetic patterns found in red colobus, with some evidence for less extensive male dispersal. In contrast to the microsatellite data, low mitochondrial diversity for the black-and-white colobus suggests that historical and/or long-range male-mediated gene flow might have been favored. In red colobus, the co-existence of three divergent mitochondrial haplogroups suggests that the Cantanhez population contains a secondary contact zone between divergent lineages that evolved in allopatry. Female-biased dispersal in this species may be a major factor contributing to the colonization by such differentiated mitochondrial lineages in the region. Overall, we find evidence for a spatio-temporal change in the dispersal patterns of the colobus monkeys of Cantanhez, with mitochondrial DNA indicating dispersal by mainly a single sex and microsatellite data suggesting that recently both sexes appear to be dispersing within the population. PMID:23359253

  6. Passive acoustic monitoring of the temporal variability of odontocete tonal sounds from a long-term marine observatory.

    PubMed

    Lin, Tzu-Hao; Yu, Hsin-Yi; Chen, Chi-Fang; Chou, Lien-Siang

    2015-01-01

    The developments of marine observatories and automatic sound detection algorithms have facilitated the long-term monitoring of multiple species of odontocetes. Although classification remains difficult, information on tonal sound in odontocetes (i.e., toothed whales, including dolphins and porpoises) can provide insights into the species composition and group behavior of these species. However, the approach to measure whistle contour parameters for detecting the variability of odontocete vocal behavior may be biased when the signal-to-noise ratio is low. Thus, methods for analyzing the whistle usage of an entire group are necessary. In this study, a local-max detector was used to detect burst pulses and representative frequencies of whistles within 4.5-48 kHz. Whistle contours were extracted and classified using an unsupervised method. Whistle characteristics and usage pattern were quantified based on the distribution of representative frequencies and the composition of whistle repertoires. Based on the one year recordings collected from the Marine Cable Hosted Observatory off northeastern Taiwan, odontocete burst pulses and whistles were primarily detected during the nighttime, especially after sunset. Whistle usage during the nighttime was more complex, and whistles with higher frequency were mainly detected during summer and fall. According to the multivariate analysis, the diurnal variation of whistle usage was primarily related to the change of mode frequency, diversity of representative frequency, and sequence complexity. The seasonal variation of whistle usage involved the previous three parameters, in addition to the diversity of whistle clusters. Our results indicated that the species and behavioral composition of the local odontocete community may vary among seasonal and diurnal cycles. The current monitoring platform facilitates the evaluation of whistle usage based on group behavior and provides feature vectors for species and behavioral classification in future studies. PMID:25923338

  7. Passive Acoustic Monitoring of the Temporal Variability of Odontocete Tonal Sounds from a Long-Term Marine Observatory

    PubMed Central

    Lin, Tzu-Hao; Yu, Hsin-Yi; Chen, Chi-Fang; Chou, Lien-Siang

    2015-01-01

    The developments of marine observatories and automatic sound detection algorithms have facilitated the long-term monitoring of multiple species of odontocetes. Although classification remains difficult, information on tonal sound in odontocetes (i.e., toothed whales, including dolphins and porpoises) can provide insights into the species composition and group behavior of these species. However, the approach to measure whistle contour parameters for detecting the variability of odontocete vocal behavior may be biased when the signal-to-noise ratio is low. Thus, methods for analyzing the whistle usage of an entire group are necessary. In this study, a local-max detector was used to detect burst pulses and representative frequencies of whistles within 4.5–48 kHz. Whistle contours were extracted and classified using an unsupervised method. Whistle characteristics and usage pattern were quantified based on the distribution of representative frequencies and the composition of whistle repertoires. Based on the one year recordings collected from the Marine Cable Hosted Observatory off northeastern Taiwan, odontocete burst pulses and whistles were primarily detected during the nighttime, especially after sunset. Whistle usage during the nighttime was more complex, and whistles with higher frequency were mainly detected during summer and fall. According to the multivariate analysis, the diurnal variation of whistle usage was primarily related to the change of mode frequency, diversity of representative frequency, and sequence complexity. The seasonal variation of whistle usage involved the previous three parameters, in addition to the diversity of whistle clusters. Our results indicated that the species and behavioral composition of the local odontocete community may vary among seasonal and diurnal cycles. The current monitoring platform facilitates the evaluation of whistle usage based on group behavior and provides feature vectors for species and behavioral classification in future studies. PMID:25923338

  8. Downward biogenic fluxes in the SW Black Sea: dynamics of their compositional and temporal patterns

    NASA Astrophysics Data System (ADS)

    Bouloubassi, I.; Gogou, A.; Stavrakakis, S.; Sanchez-Vidal, A.; Grégoire, M.

    2012-04-01

    In the Black Sea, downward fluxes of biogenic elements in the water column were monitored during a 1 yr (2007-2008) sediment trap deployment in the SW basin (at 1000 and 2000 m water depth) aiming at appraising their amplitude, seasonal variability and prime controlling factors, and thus better assessing the biogeochemical functioning of this environment. Particulate organic carbon (POC) and carbonate fluxes display a strong seasonal pattern, with peak values in late autumn (POC) and early summer (carbonates). Mean POC fluxes at 1000 and 2000 m were 11.3 and 6 mg/m2/d, respectively, corresponding to 1.8 and 1 % of the estimated primary production. We used source-specific lipid biomarkers in order to determine the major phytoplankton contributors to the biogenic fluxes, as well as terrestrial organic inputs, and to shed light into the composition and variability of the biological system. These molecular data clearly demonstrate that diatoms (in particular Rhizosolenia species) are foremost drivers of the peak POC flux in late autumn. As expected, diatom productivity is also closely related with the patterns of the export opal fluxes. Furthermore, biomarkers document a major bloom of Emiliania Huxleyi in late spring/early summer, likely sustained by riverine nutrient inputs and/or regenerated nutrients. However, POC export is less strong during the coccolithophorid bloom. In contract, this bloom controls the unique peak value of carbonate flux. Dinoflagellate-specific biomarkers reveal a less prominent seasonal pattern, with higher values in late autumn and summer. In all the aforementioned periods biomarker tracers also evidence that zooplankton (and its fecal pellets) are important constituents of the export POC flux. As for the terrestrial inputs, they are mostly characterized by a high peak in late spring/early summer, when enhanced riverine discharges occur. Our findings demonstrate that the export of biogenic elements is closely linked to the structure of the biological system. The latter is largely controlled by hydrological features (physical forcing). The absence of a "typical" spring bloom, in line with historical data since the mid 90's, reflects the impact of warming and associated limited nutrient supply into surface waters due to weaker mixing during mild winters. Instead, diatoms bloom rather in autumn with a strong phase in November. Increased stratification with a shallow mixing zone and most favorable light and temperature conditions lead to a strong coccolithophorid bloom in early summer (overlooked by satellite Chl assessments). We further compare our findings with available in-situ and satellite data and with a coupled physical-biogeochemical model in order to progress in our understanding of the dynamics of export biogenic fluxes in the Black Sea and its links with the biological community structure, the biogeochemical functioning of the Black Sea system and environmental changes.

  9. Efficient Spatio-Temporal Local Binary Patterns for Spontaneous Facial Micro-Expression Recognition

    PubMed Central

    Wang, Yandan; See, John; Phan, Raphael C.-W.; Oh, Yee-Hui

    2015-01-01

    Micro-expression recognition is still in the preliminary stage, owing much to the numerous difficulties faced in the development of datasets. Since micro-expression is an important affective clue for clinical diagnosis and deceit analysis, much effort has gone into the creation of these datasets for research purposes. There are currently two publicly available spontaneous micro-expression datasets—SMIC and CASME II, both with baseline results released using the widely used dynamic texture descriptor LBP-TOP for feature extraction. Although LBP-TOP is popular and widely used, it is still not compact enough. In this paper, we draw further inspiration from the concept of LBP-TOP that considers three orthogonal planes by proposing two efficient approaches for feature extraction. The compact robust form described by the proposed LBP-Six Intersection Points (SIP) and a super-compact LBP-Three Mean Orthogonal Planes (MOP) not only preserves the essential patterns, but also reduces the redundancy that affects the discriminality of the encoded features. Through a comprehensive set of experiments, we demonstrate the strengths of our approaches in terms of recognition accuracy and efficiency. PMID:25993498

  10. Spatial and temporal patterns of paleoglaciation across eastern Tibet and Central Asia

    NASA Astrophysics Data System (ADS)

    Stroeven, Arjen P.

    2015-04-01

    Cosmogenic nuclide dating has emerged as a key tool in reconstructing the timing and impacts of past glaciation. Dates from glacial deposits such as moraines and erratics typically provide constraints on the minimum ages of glacial stages. As an international team, we are reconstructing glacial histories of several areas in Central Asia, including parts of the eastern Tibetan Plateau and along the Tian Shan, Altai and Kunlun Mountains. Results to date show significant variations in the timing and extent of glaciation, including areas in the southeast Tibetan Plateau and Tian Shan with extensive valley and small polythermal ice cap glaciation during the global last glacial maximum, in contrast to areas in central and northeast Tibetan Plateau that had very limited valley glacier expansion during the global last glacial maximum. Polythermal ice cap glaciation is inferred for the Haizi Shan area in the southeast Tibetan Plateau on the basis of patterns of glacial and relict landforms, as well as only partial resetting of ages on some erosional features. Numerical modelling attempting to simulate mapped and dated paleoglacial extents predicts limited cooling to attain former maximum glacier extents.

  11. Efficient spatio-temporal local binary patterns for spontaneous facial micro-expression recognition.

    PubMed

    Wang, Yandan; See, John; Phan, Raphael C-W; Oh, Yee-Hui

    2015-01-01

    Micro-expression recognition is still in the preliminary stage, owing much to the numerous difficulties faced in the development of datasets. Since micro-expression is an important affective clue for clinical diagnosis and deceit analysis, much effort has gone into the creation of these datasets for research purposes. There are currently two publicly available spontaneous micro-expression datasets--SMIC and CASME II, both with baseline results released using the widely used dynamic texture descriptor LBP-TOP for feature extraction. Although LBP-TOP is popular and widely used, it is still not compact enough. In this paper, we draw further inspiration from the concept of LBP-TOP that considers three orthogonal planes by proposing two efficient approaches for feature extraction. The compact robust form described by the proposed LBP-Six Intersection Points (SIP) and a super-compact LBP-Three Mean Orthogonal Planes (MOP) not only preserves the essential patterns, but also reduces the redundancy that affects the discriminality of the encoded features. Through a comprehensive set of experiments, we demonstrate the strengths of our approaches in terms of recognition accuracy and efficiency. PMID:25993498

  12. Temporal patterns of cortical proliferation of glial cell populations after traumatic brain injury in mice

    PubMed Central

    Susarla, Bala T.S.; Villapol, Sonia; Yi, Jae-Hyuk; Geller, Herbert M.; Symes, Aviva J.

    2014-01-01

    TBI (traumatic brain injury) triggers an inflammatory cascade, gliosis and cell proliferation following cell death in the pericontusional area and surrounding the site of injury. In order to better understand the proliferative response following CCI (controlled cortical impact) injury, we systematically analyzed the phenotype of dividing cells at several time points post-lesion. C57BL/6 mice were subjected to mild to moderate CCI over the left sensory motor cortex. At different time points following injury, mice were injected with BrdU (bromodeoxyuridine) four times at 3-h intervals and then killed. The greatest number of proliferating cells in the pericontusional region was detected at 3 dpi (days post-injury). At 1 dpi, NG2+ cells were the most proliferative population, and at 3 and 7 dpi the Iba-1+ microglial cells were proliferating more. A smaller, but significant number of GFAP+ (glial fibrillary acidic protein) astrocytes proliferated at all three time points. Interestingly, at 3 dpi we found a small number of proliferating neuroblasts [DCX+ (doublecortin)] in the injured cortex. To determine the cell fate of proliferative cells, mice were injected four times with BrdU at 3 dpi and killed at 28 dpi. Approximately 70% of proliferative cells observed at 28 dpi were GFAP+ astrocytes. In conclusion, our data suggest that the specific glial cell types respond differentially to injury, suggesting that each cell type responds to a specific pattern of growth factor stimulation at each time point after injury. PMID:24670035

  13. Eolian sediment responses to late Quaternary climate changes: Temporal and spatial patterns in the Sahara

    USGS Publications Warehouse

    Swezey, C.

    2001-01-01

    This paper presents a compilation of eolian-based records of late Quaternary climate changes in the Sahara. Although the data are relatively sparse, when viewed as a whole, they reveal a general pattern of widespread eolian sediment mobilization prior to 11,000 cal. years BP, eolian sediment stabilization from 11,000 to 5000 cal. years BP, and a return to widespread eolian sediment mobilization after 5000 cal. years BP. Furthermore, an eolian-based record from southern Tunisia reveals the existence of millennial-scale changes in eolian sediment behavior. These millennial-scale variations provide examples of eolian sediment responses to climate changes at a scale intermediate between seasonal and orbital ('Milankovitch') changes, and they are also coincident with abrupt atmospheric and oceanic changes. The general synchroneity of the eolian stratigraphic records and their coincidence with various oceanic and atmospheric changes suggest that global forcing mechanisms have influenced late Quaternary eolian sediment behavior in the Sahara. ?? 2001 Elsevier Science B.V.

  14. Using soil seed banks to assess temporal patterns of genetic variation in invasive plant populations

    PubMed Central

    Fennell, Mark; Gallagher, Tommy; Vintro, Luis Leon; Osborne, Bruce

    2014-01-01

    Most research on the genetics of invasive plant species has focused on analyzing spatial differences among existing populations. Using a long-established Gunnera tinctoria population from Ireland, we evaluated the potential of using plants derived from seeds associated with different soil layers to track genetic variation through time. This species and site were chosen because (1) G. tinctoria produces a large and persistent seed bank; (2) it has been present in this locality, Sraheens, for ?90 years; (3) the soil is largely undisturbed; and (4) the soil's age can be reliably determined radiometrically at different depths. Amplified fragment length polymorphic markers (AFLPs) were used to assess differences in the genetic structure of 75 individuals sampled from both the standing population and from four soil layers, which spanned 18 cm (estimated at ?90 years based on 210Pb and 137Cs dating). While there are difficulties in interpreting such data, including accounting for the effects of selection, seed loss, and seed migration, a clear pattern of lower total allele counts, percentage polymorphic loci, and genetic diversity was observed in deeper soils. The greatest percentage increase in the measured genetic variables occurred prior to the shift from the lag to the exponential range expansion phases and may be of adaptive significance. These findings highlight that seed banks in areas with long-established invasive populations can contain valuable genetic information relating to invasion processes and as such, should not be overlooked. PMID:24967082

  15. Salmon Migration Patterns Revealed the Temporal and Spatial Fluctuations of the Radiocesium Levels in Terrestrial and Ocean Environments

    PubMed Central

    Arai, Takaomi

    2014-01-01

    The disabling of the Fukushima Daiichi Nuclear Power Plant (F1NPP) resulted in the release of radionuclides, including 134Cs and 137Cs, into the air and the ocean. The unpredicted nuclear accident is of global concern for human health and the ecosystem. Although investigations of radionuclides in environments were performed shortly after the accident started, the temporal and spatial impacts and fluctuations on the releasing radionuclides to natural environment remain unclear. I focused on salmon, which migrate from inland to the open ocean globally, to reveal the three-year (May 2011 to February 2014) fluctuations and accumulations of 134Cs and 137Cs from terrestrial to open ocean environments after the F1NPP accident. The 134Cs and 137Cs concentrations in six salmonids exhibited lower temporal variations for three years after the F1NPP accident, suggesting that these radionuclides are widely distributed and these radionuclides remain in the natural environment globally with less convergence. The accumulation patterns were significantly different among the different salmon species. Fluvial (freshwater residence) type salmons exhibited significantly higher accumulation in 134Cs (25.3–40.2 Bq kg?1 in mean) and 137Cs (41.4–51.7 Bq kg?1 in mean) than did the anadromous (sea-run) type salmons (0.64–8.03 Bq kg?1 in mean 134Cs and 0.42–10.2 Bq kg?1 in mean 137Cs) suggesting widespread contamination in terrestrial environments versus the coastal and open ocean environments. Salmonids are the most highly migratory animals and are characterised by their strong tendency to return home to their natal site for reproduction. Salmonids have a potential to be a good indicator as an effective monitoring animal. PMID:24964195

  16. Salmon migration patterns revealed the temporal and spatial fluctuations of the radiocesium levels in terrestrial and ocean environments.

    PubMed

    Arai, Takaomi

    2014-01-01

    The disabling of the Fukushima Daiichi Nuclear Power Plant (F1NPP) resulted in the release of radionuclides, including 134Cs and 137Cs, into the air and the ocean. The unpredicted nuclear accident is of global concern for human health and the ecosystem. Although investigations of radionuclides in environments were performed shortly after the accident started, the temporal and spatial impacts and fluctuations on the releasing radionuclides to natural environment remain unclear. I focused on salmon, which migrate from inland to the open ocean globally, to reveal the three-year (May 2011 to February 2014) fluctuations and accumulations of 134Cs and 137Cs from terrestrial to open ocean environments after the F1NPP accident. The 134Cs and 137Cs concentrations in six salmonids exhibited lower temporal variations for three years after the F1NPP accident, suggesting that these radionuclides are widely distributed and these radionuclides remain in the natural environment globally with less convergence. The accumulation patterns were significantly different among the different salmon species. Fluvial (freshwater residence) type salmons exhibited significantly higher accumulation in 134Cs (25.3-40.2 Bq kg(-1) in mean) and 137Cs (41.4-51.7 Bq kg(-1) in mean) than did the anadromous (sea-run) type salmons (0.64-8.03 Bq kg(-1) in mean 134Cs and 0.42-10.2 Bq kg(-1) in mean 137Cs) suggesting widespread contamination in terrestrial environments versus the coastal and open ocean environments. Salmonids are the most highly migratory animals and are characterised by their strong tendency to return home to their natal site for reproduction. Salmonids have a potential to be a good indicator as an effective monitoring animal. PMID:24964195

  17. Long-Term Citizen-Collected Data Reveal Geographical Patterns and Temporal Trends in Lake Water Clarity

    PubMed Central

    Lottig, Noah R.; Wagner, Tyler; Norton Henry, Emily; Spence Cheruvelil, Kendra; Webster, Katherine E.; Downing, John A.; Stow, Craig A.

    2014-01-01

    We compiled a lake-water clarity database using publically available, citizen volunteer observations made between 1938 and 2012 across eight states in the Upper Midwest, USA. Our objectives were to determine (1) whether temporal trends in lake-water clarity existed across this large geographic area and (2) whether trends were related to the lake-specific characteristics of latitude, lake size, or time period the lake was monitored. Our database consisted of >140,000 individual Secchi observations from 3,251 lakes that we summarized per lake-year, resulting in 21,020 summer averages. Using Bayesian hierarchical modeling, we found approximately a 1% per year increase in water clarity (quantified as Secchi depth) for the entire population of lakes. On an individual lake basis, 7% of lakes showed increased water clarity and 4% showed decreased clarity. Trend direction and strength were related to latitude and median sample date. Lakes in the southern part of our study-region had lower average annual summer water clarity, more negative long-term trends, and greater inter-annual variability in water clarity compared to northern lakes. Increasing trends were strongest for lakes with median sample dates earlier in the period of record (1938–2012). Our ability to identify specific mechanisms for these trends is currently hampered by the lack of a large, multi-thematic database of variables that drive water clarity (e.g., climate, land use/cover). Our results demonstrate, however, that citizen science can provide the critical monitoring data needed to address environmental questions at large spatial and long temporal scales. Collaborations among citizens, research scientists, and government agencies may be important for developing the data sources and analytical tools necessary to move toward an understanding of the factors influencing macro-scale patterns such as those shown here for lake water clarity. PMID:24788722

  18. The spatial and temporal patterning of the deep crust and implications for the process of melt extraction.

    PubMed

    Brown, Michael

    2010-01-13

    Volumetrically significant melt production requires crustal temperatures above approximately 800 °C. At the grain scale, the former presence of melt may be inferred based on various microstructures, particularly pseudomorphs of melt pores and grain-boundary melt films. In residual migmatites and granulites, evidence of melt-extraction pathways at outcrop scale is recorded by crystallized products of melt (leucosome) and residual material from which melt has drained (melanosome). These features form networks or arrays that potentially demonstrate the temporal and spatial relations between deformation and melting. As melt volume increases at sites of initial melting, the feedback between deformation and melting creates a dynamic rheological environment owing to localization and strain-rate weakening. With increasing temperature, melt volume increases to the melt connectivity transition, in the range of 2-7 vol% melt, at which point melt may escape in the first of several melt-loss events, where each event represents a batch of melt that left the source and ascended higher in the crust. Each contributing process has characteristic length and time scales, and it is the nonlinear interactions and feedback relations among them that give rise to the dissipative structures and episodicity of melt-extraction events that are recorded as variations in the spatial and temporal patterning of the crust. Focused melt flow occurs by dilatant shear failure of low-melt fraction rocks creating melt-flow networks that allow accumulation and storage of melt, and form the link for melt flow from grain boundaries to veins allowing drainage to crustal-scale ascent conduits. Preliminary indications suggest that anatectic systems are strongly self-organized from the bottom up, becoming more ordered by decreasing the number and increasing the width of ascent conduits from the anatectic zone through the overlying subsolidus crust to the ductile-to-brittle transition zone, where the melt accumulates in plutons. PMID:19948543

  19. Spatio-temporal patterns of mass fluxes of micropollutants in Swiss rivers of catchments with different land use

    NASA Astrophysics Data System (ADS)

    Stamm, Christian; van der Voet, Jürgen; Singer, Heinz

    2010-05-01

    It is known from many studies that a large number of micropollutants like pesticides, household products or pharmaceuticals can be found in water bodies. However, there is a general lack of systematic monitoring data that allow for distinguishing between possible sources, detecting temporal trends, or evaluating effects of possible mitigation measures. Including micropollutants in existing monitoring programs is not a trivial task for several reasons (e.g., sorption to sampling equipment, hydrolysis, detection limits etc.). Here, we present systematic concentration and load data for 12 substances (7 pesticides and/or biocides, 3 pharmaceuticals, and 2 anti-corrosives) obtained from a one-year sampling campaign within the "National Long-term Surveillance of Swiss Rivers" (NADUF) programme. Six (partially) nested sampling stations were selected to monitor these compounds in weekly or bi-weekly, flow-proportional samples over one year. Due to the high sensitivity of the LC-MSMS method all compounds could be quantified in almost all samples. Only at the reference site without any effluent from waste water treatment plants and hardly any arable farming, the concentrations were always below the limits of detection of a few ng/L. At all other sites, concentrations generally ranged between 10 and 200 ng/L. Only, the anticorrosive agent benzotriazole often exceeded 1000 ng/L. According to the use of the compounds, different temporal load patterns can be expected. In general, the data confirmed these patterns with almost constant loads of pharmaceuticals at most sites, increased herbicides loads during the periods of agricultural use and positive correlations with discharge year round for biocides used in material protection. However, at some sites the expectations were not met for all compounds. The pain-killer diclofenac for example showed strongly declining loads during the summer months at sites influenced by lake water. This compound is not stable in the epilimnion of lakes, where it has a residence time of several weeks, while it flows through the river system within a few days. This example illustrates how compound properties, season and spatial location may interact and control the occurrence of micropollutants in a stream. The spatial nesting of study catchments made it possible to check the data for plausibility and consistency: we present data on cumulative mass balances downstream and test whether the load development along the river network corresponds to the spatial distribution of possible compound sources (e.g., acreage of arable fields, number of inhabitants etc.). Overall, the data show that monitoring of micropollutants may be achieved even without changing an existing monitoring programme. However, given the generally low concentrations in the composite samples of the NADUF programme compounds with lower use and/or lower stability may fall below the limit of reliable quantification or even detection. A proper interpretation of the data relies on additional (spatio-temporal) information like land use data or precipitation patterns.

  20. Acoustic neuroma

    MedlinePLUS

    Vestibular schwannoma; Tumor - acoustic; Cerebellopontine angle tumor; Angle tumor ... Acoustic neuromas have been linked with the genetic disorder neurofibromatosis type 2 (NF2). Acoustic neuromas are uncommon.

  1. Spatio-temporal patterns of brain activity distinguish strategies of multiple-object tracking.

    PubMed

    Merkel, Christian; Stoppel, Christian M; Hillyard, Steven A; Heinze, Hans-Jochen; Hopf, Jens-Max; Schoenfeld, Mircea Ariel

    2014-01-01

    Human observers can readily track up to four independently moving items simultaneously, even in the presence of moving distractors. Here we combined EEG and magnetoencephalography recordings to investigate the neural processes underlying this remarkable capability. Participants were instructed to track four of eight independently moving items for 3 sec. When the movement ceased a probe stimulus consisting of four items with a higher luminance was presented. The location of the probe items could correspond fully, partly, or not at all with the tracked items. Participants reported whether the probe items fully matched the tracked items or not. About half of the participants showed slower RTs and higher error rates with increasing correspondence between tracked items and the probe. The other half, however, showed faster RTs and lower error rates when the probe fully matched the tracked items. This latter behavioral pattern was associated with enhanced probe-evoked neural activity that was localized to the lateral occipital cortex in the time range 170-210 msec. This enhanced response in the object-selective lateral occipital cortex suggested that these participants performed the tracking task by visualizing the overall shape configuration defined by the vertices of the tracked items, thereby producing a behavioral advantage on full-match trials. In a later time range (270-310 msec) probe-evoked neural activity increased monotonically as a function of decreasing target-probe correspondence in all participants. This later modulation, localized to superior parietal cortex, was proposed to reflect the degree of mismatch between the probe and the automatically formed visual STM representation of the tracked items. PMID:23915053

  2. Spatio-temporal patterns of velopharyngeal action in phonetic and phonological nasalization.

    PubMed

    Solé, M J

    1995-01-01

    The aim of this paper is to differentiate between effects of phonetic implementation and effects of phonological structure in the adjustment of articulatory trajectories to varying speech rate. Cross-linguistic data on coarticulatory nasalization of vowels preceding a nasal consonant at different speech rates were analyzed in American English and Spanish. The two languages show different patterns of timing, magnitude, duration, and velocity of velopharyngeal movements. In Spanish the velocity of velar port (VP) opening and closing gestures is not affected by differences in speech rate, which suggests that these trajectories reflect the default articulatory movements automatically implemented by the phonetic component. In American English, VP closing velocity is not affected by speech rate whereas opening velocity adjusts to variations in speech rate to ensure vowel nasalization across rates. The careful regulation of VP opening velocity suggests that it is centrally controlled. Interarticulatory timing data support this interpretation: In Spanish, vowels are oral for most of their duration; onset of VP opening is timed relative to the following nasal consonant and peak VP size occurs at nasal consonant onset across rates, which suggests that the motor commands for opening the velar port are part of the instructions for the nasal consonant. In American English, on the other hand, VP opening onset coincides with vowel onset and peak VP size occurs in the middle of the vowel across rates, which indicates that opening movements are part of the programming instructions for the vowel. It is argued that, in Spanish, vowels followed by a nasal consonant are targeted as oral and are nasalized as a result of a coarticulatory effect, whereas, in American English, vowels are targeted as nasalized as a result of a phonological rule. PMID:7651051

  3. Drivers and feedbacks in spatial and temporal patterning of hydrology and vegetation in the Everglades wetlands

    NASA Astrophysics Data System (ADS)

    Miralles-Wilhelm, F.; Foti, R.; Rinaldo, A.; Rodriguez-Iturbe, I.; Del Jesus, M.

    2013-05-01

    Hosting a large variety of vegetal and animal species, many of which rare or endangered, wetlands are among the most rich and vulnerable ecosystems in the world. Throughout the past century, the growing climatic impact and the increasing anthropogenic pressure have seriously threatened their natural equilibrium and substantially deteriorated their ecosystems. For fragility, biodiversity and extension, the Everglades is probably one of the most iconic wetlands in the world. After decades of land seizing and exploitation following the southward march of development in Florida, awareness of the importance of the Everglades wetlands has recently risen, bringing it to the center of one of the largest and most ambitious restoration projects ever attempted. Wetlands equilibrium and biodiversity are crucially linked to the hydrologic regime. In the Everglades, hydroperiods (i.e. percent of time a site is inundated) exert a critical control in the creation of habitat niches for different plant species. However, the feedbacks between the hydrologic signature and the plant dynamics that ultimately yield the observed spatial vegetation patterns are unknown. We identify both the main hydrologic and local drivers of the vegetation species spatial configuration and use them within a robust modeling framework able to reproduce the vegetation structures currently observed in the Everglades. By including both exogenous (i.e. hydrologic) and endogenous (i.e. local interactions) forcings, we are able to describe the mechanisms yielding to the observed power law behavior of the cluster size distribution of vegetation species. Since power law clustering is often associated with self-organization and systems near critical transitions, these findings can be successfully used to quantitatively assess the impact of potential climatic shifts and the effect of habitat loss or deterioration due to human activity, and can assist policy makers in identifying case-specific ecosystems restoration and preservation measures.

  4. Temporal patterns of inputs to cerebellum necessary and sufficient for trace eyelid conditioning.

    PubMed

    Kalmbach, Brian E; Ohyama, Tatsuya; Mauk, Michael D

    2010-08-01

    Trace eyelid conditioning is a form of associative learning that requires several forebrain structures and cerebellum. Previous work suggests that at least two conditioned stimulus (CS)-driven signals are available to the cerebellum via mossy fiber inputs during trace conditioning: one driven by and terminating with the tone and a second driven by medial prefrontal cortex (mPFC) that persists through the stimulus-free trace interval to overlap in time with the unconditioned stimulus (US). We used electric stimulation of mossy fibers to determine whether this pattern of dual inputs is necessary and sufficient for cerebellar learning to express normal trace eyelid responses. We find that presenting the cerebellum with one input that mimics persistent activity observed in mPFC and the lateral pontine nuclei during trace eyelid conditioning and another that mimics tone-elicited mossy fiber activity is sufficient to produce responses whose properties quantitatively match trace eyelid responses using a tone. Probe trials with each input delivered separately provide evidence that the cerebellum learns to respond to the mPFC-like input (that overlaps with the US) and learns to suppress responding to the tone-like input (that does not). This contributes to precisely timed responses and the well-documented influence of tone offset on the timing of trace responses. Computer simulations suggest that the underlying cerebellar mechanisms involve activation of different subsets of granule cells during the tone and during the stimulus-free trace interval. These results indicate that tone-driven and mPFC-like inputs are necessary and sufficient for the cerebellum to learn well-timed trace conditioned responses. PMID:20484534

  5. Inducible Defenses Stay Up Late: Temporal Patterns of Immune Gene Expression in Tenebrio molitor

    PubMed Central

    Johnston, Paul R; Makarova, Olga; Rolff, Jens

    2014-01-01

    The course of microbial infection in insects is shaped by a two-stage process of immune defense. Constitutive defenses, such as engulfment and melanization, act immediately and are followed by inducible defenses, archetypically the production of antimicrobial peptides, which eliminate or suppress the remaining microbes. By applying RNAseq across a 7-day time course, we sought to characterize the long-lasting immune response to bacterial challenge in the mealworm beetle Tenebrio molitor, a model for the biochemistry of insect immunity and persistent bacterial infection. By annotating a hybrid de novo assembly of RNAseq data, we were able to identify putative orthologs for the majority of components of the conserved insect immune system. Compared with Tribolium castaneum, the most closely related species with a reference genome sequence and a manually curated immune system annotation, the T. molitor immune gene count was lower, with lineage-specific expansions of genes encoding serine proteases and their countervailing inhibitors accounting for the majority of the deficit. Quantitative mapping of RNAseq reads to the reference assembly showed that expression of genes with predicted functions in cellular immunity, wound healing, melanization, and the production of reactive oxygen species was transiently induced immediately after immune challenge. In contrast, expression of genes encoding antimicrobial peptides or components of the Toll signaling pathway and iron sequestration response remained elevated for at least 7 days. Numerous genes involved in metabolism and nutrient storage were repressed, indicating a possible cost of immune induction. Strikingly, the expression of almost all antibacterial peptides followed the same pattern of long-lasting induction, regardless of their spectra of activity, signaling possible interactive roles in vivo. PMID:24318927

  6. Carbon Exports to the Gulf of Maine: Temporal Variations of Spatial Patterns from Hours to Years

    NASA Astrophysics Data System (ADS)

    Roesler, C. S.; Camill, P.; Huntington, T. G.; Drapeau, S.; Bourakovsky, A.; Lichter, J.

    2014-12-01

    The export of terrestrial carbon into the coastal waters of the Gulf of Maine was investigated from an extended field program that spanned three years and sampled four of the largest Maine and New Brunswick watersheds. Monthly observations of optical, biogeochemical and water quality parameters were collected at 67 stations during ice-free conditions. Optical proxies for biogeochemical properties were quantified with the emphasis on investigating three pools of organic carbon: algal carbon from chlorophyll fluorescence, particulate organic carbon from particle backscattering, and dissolved organic carbon from fluorescent dissolved organic matter. These proxies remained statistically robust throughout the sampling period and between watersheds. Seasonal and interannual patterns in the carbon pools varied predictably with latitude, land cover and discharge. Monthly observations indicated that dissolved organic carbon dominated total carbon export and further, that its concentration exhibited a strong coherence with river discharge, particularly the fall discharge peak. Watersheds with significant wetland were associated with the highest dissolved organic carbon concentrations over other land coverage types. While algal carbon from riverine primary production is not significant in terms of carbon export, it does significantly reduce the inorganic nutrient flux from rivers to coastal waters. Non-algal particulate organic carbon was the smallest component with isolated tributaries contributing non-negligible contributions to total organic carbon flux. In situ optical sensors deployed at the mouths of each river yielded hourly estimates of organic carbon concentration and export allowing elucidation of the variability in flux dynamics such as a hysteresis in the relationship between carbon concentration and river discharge that was not observed on weekly or monthly sampling regimes. Such observations are used to improve modeled estimates of annual carbon export.

  7. Phenological series in Bologna (Northern Italy): temporal trends and spatial pattern of greening

    NASA Astrophysics Data System (ADS)

    Puppi, Giovanna; Zanotti, Anna Letizia

    2010-05-01

    In Europe, in the last thirty years, the onset of spring has advanced (Estrella et al. 2009 Clim Res. 39). However the phenological shifts vary from one country to another and long time series are scanty in Southern Europe (Pe?uelas et. al. 2002, Glob. Change Biol.; ?repinšek et Kajfež 2003, Ann.Ser.Hist.Nat.13): for this reason we analyzed the data on leafing of some woody species recorded during the last 3 decades (1977-2009) in the city of Bologna (Emilia-Romagna, Northern Italy) and in several hillside stations in the neighbourhood of the town. As BGS index, the average day of "first leaf unfolding" (GFI=V4, BBCH=11) of a group of common woody species was chosen: the BGS days were analysed in relation with time and temperature changes. The BGS happens on average at the end of March. The species observed display a negative trend along the period (about 2 days of advance per decade) and the BGS days show a significant correlation with the mean temperature of the period January-March (about 3 and a half days of earlier start per degree of increasing temperature). Since an increase in winter temperatures has been predicted in the Emilia-Romagna region in the next decades (Tomozeiu et al. 2007, Theor. Appl. Climatol. 90), the growing season in our region is probably going to extend. Phenological spatial patterns of the neighbourhood of the city are also analysed: greening generally starts on southfacing hills between 100 and 300 m asl.

  8. Temporal patterns in the structure of macrobenthic communities of an Australian estuary

    NASA Astrophysics Data System (ADS)

    Rainer, Sebastian

    1981-12-01

    The benthic fauna of a small estuary was examined to test hypotheses about community structure and environmental stress (foreign, or natural but excessive, perturbations in the environment). Quantitative samples were collected at approximately 2-month intervals over 18 months from Cabbage Tree Basin, Port Hacking, New South Wales. The sites sampled ranged from the intertidal to a central basin subject to deoxygenation of the bottom water. The species composition of the intertidal and shallow-water sites was more stable than that of the deeper sites, due to the presence of short-lived opportunistic species at the deeper sites after periods of deoxygenation. There were no obvious changes in species composition associated with temperature minima or maxima. No changes directly associated with reduced salinity after rainfall were found, although heavy rainfall prior to the sampling period may have reduced the number of species at some sites. The stable community structure and species composition at the intertidal and shallow-water sites indicated that greater environmental harshness does not necessarily imply less faunal stability. Differences in diversity among these sites were interpreted as evidence that biological accommodation was responsible for a reduction in diversity from values predicted by the neutral model. At a deeper site, diversity was close to neutral model predictions. It is suggested that the ecotone point in a stressed community may be characterized by diversity values that are in agreement with neutral model predictions. The statistical properties of the measures of diversity and evenness were not important for their interpretation. Biomass-based measures indicated patterns that were often different from frequency-based measures.

  9. Spatio-temporal patterns of distribution of West Nile virus vectors in eastern Piedmont Region, Italy

    PubMed Central

    2011-01-01

    Background West Nile Virus (WNV) transmission in Italy was first reported in 1998 as an equine outbreak near the swamps of Padule di Fucecchio, Tuscany. No other cases were identified during the following decade until 2008, when horse and human outbreaks were reported in Emilia Romagna, North Italy. Since then, WNV outbreaks have occurred annually, spreading from their initial northern foci throughout the country. Following the outbreak in 1998 the Italian public health authority defined a surveillance plan to detect WNV circulation in birds, horses and mosquitoes. By applying spatial statistical analysis (spatial point pattern analysis) and models (Bayesian GLMM models) to a longitudinal dataset on the abundance of the three putative WNV vectors [Ochlerotatus caspius (Pallas 1771), Culex pipiens (Linnaeus 1758) and Culex modestus (Ficalbi 1890)] in eastern Piedmont, we quantified their abundance and distribution in space and time and generated prediction maps outlining the areas with the highest vector productivity and potential for WNV introduction and amplification. Results The highest abundance and significant spatial clusters of Oc. caspius and Cx. modestus were in proximity to rice fields, and for Cx. pipiens, in proximity to highly populated urban areas. The GLMM model showed the importance of weather conditions and environmental factors in predicting mosquito abundance. Distance from the preferential breeding sites and elevation were negatively associated with the number of collected mosquitoes. The Normalized Difference Vegetation Index (NDVI) was positively correlated with mosquito abundance in rice fields (Oc. caspius and Cx. modestus). Based on the best models, we developed prediction maps for the year 2010 outlining the areas where high abundance of vectors could favour the introduction and amplification of WNV. Conclusions Our findings provide useful information for surveillance activities aiming to identify locations where the potential for WNV introduction and local transmission are highest. Such information can be used by vector control offices to stratify control interventions in areas prone to the invasion of WNV and other mosquito-transmitted pathogens. PMID:22152822

  10. Temporal and spatial patterns of microbial community biomass and composition in the Southern California Current Ecosystem

    NASA Astrophysics Data System (ADS)

    Taylor, Andrew G.; Landry, Michael R.; Selph, Karen E.; Wokuluk, John J.

    2015-02-01

    As part of the California Current Ecosystem Long Term Ecological Research (CCE-LTER) Program, samples for epifluorescence microscopy and flow cytometry (FCM) were collected at ten 'cardinal' stations on the California Cooperative Oceanic Fisheries Investigations (CalCOFI) grid during 25 quarterly cruises from 2004 to 2010 to investigate the biomass, composition and size-structure of microbial communities within the southern CCE. Based on our results, we divided the region into offshore, and inshore northern and southern zones. Mixed-layer phytoplankton communities in the offshore had lower biomass (16±2 ?g C L-1; all errors represent the 95% confidence interval), smaller size-class cells and biomass was more stable over seasonal cycles. Offshore phytoplankton biomass peaked during the winter months. Mixed-layer phytoplankton communities in the northern and southern inshore zones had higher biomass (78±22 and 32±9 ?g C L-1, respectively), larger size-class cells and stronger seasonal biomass patterns. Inshore communities were often dominated by micro-size (20-200 ?m) diatoms; however, autotrophic dinoflagellates dominated during late 2005 to early 2006, corresponding to a year of delayed upwelling in the northern CCE. Biomass trends in mid and deep euphotic zone samples were similar to those seen in the mixed-layer, but with declining biomass with depth, especially for larger size classes in the inshore regions. Mixed-layer ratios of autotrophic carbon to chlorophyll a (AC:Chl a) had a mean value of 51.5±5.3. Variability of nitracline depth, bin-averaged AC:Chl a in the mixed-layer ranged from 40 to 80 and from 22 to 35 for the deep euphotic zone, both with significant positive relationships to nitracline depth. Total living microbial carbon, including auto- and heterotrophs, consistently comprised about half of particulate organic carbon (POC).

  11. Spontaneous switching among multiple spatio-temporal patterns in three-oscillator systems constructed with oscillatory cells of true slime mold

    NASA Astrophysics Data System (ADS)

    Takamatsu, Atsuko

    2006-11-01

    Three-oscillator systems with plasmodia of true slime mold, Physarum polycephalum, which is an oscillatory amoeba-like unicellular organism, were experimentally constructed and their spatio-temporal patterns were investigated. Three typical spatio-temporal patterns were found: rotation ( R), partial in-phase ( PI), and partial anti-phase with double frequency ( PA). In pattern R, phase differences between adjacent oscillators were almost 120 ?. In pattern PI, two oscillators were in-phase and the third oscillator showed anti-phase against the two oscillators. In pattern PA, two oscillators showed anti-phase and the third oscillator showed frequency doubling oscillation with small amplitude. Actually each pattern is not perfectly stable but quasi-stable. Interestingly, the system shows spontaneous switching among the multiple quasi-stable patterns. Statistical analyses revealed a characteristic in the residence time of each pattern: the histograms seem to have Gamma-like distribution form but with a sharp peak and a tail on the side of long period. That suggests the attractor of this system has complex structure composed of at least three types of sub-attractors: a “Gamma attractor”-involved with several Poisson processes, a “deterministic attractor”-the residence time is deterministic, and a “stable attractor”-each pattern is stable. When the coupling strength was small, only the Gamma attractor was observed and switching behavior among patterns R, PI, and PA almost always via an asynchronous pattern named O. A conjecture is as follows: Internal/external noise exposes each pattern of R, PI, and PA coexisting around bifurcation points: That is observed as the Gamma attractor. As coupling strength increases, the deterministic attractor appears then followed by the stable attractor, always accompanied with the Gamma attractor. Switching behavior could be caused by regular existence of the Gamma attractor.

  12. Spatial Distribution and Temporal Patterns of Cassin’s Auklet Foraging and Their Euphausiid Prey in a Variable Ocean Environment

    PubMed Central

    Manugian, Suzanne; Elliott, Meredith L.; Bradley, Russ; Howar, Julie; Karnovsky, Nina; Saenz, Benjamin; Studwell, Anna; Warzybok, Pete; Nur, Nadav; Jahncke, Jaime

    2015-01-01

    Krill (Euphausiids) play a vital ecosystem role in many of the world’s most productive marine regions, providing an important trophic linkage. We introduce a robust modeling approach to link Cassin’s auklet (Ptychoramphus aleuticus) abundance and distribution to large-scale and local oceanic and atmospheric conditions and relate these patterns to similarly modeled distributions of an important prey resource, krill. We carried out at-sea strip transect bird surveys and hydroacoustic assessments of euphausiids (2004–2013). Data informed separate, spatially-explicit predictive models of Cassin’s auklet abundance (zero-inflated negative binomial regression) and krill biomass (two-part model) based on these surveys. We established the type of prey responsible for acoustic backscatter by conducting net tows of the upper 50 m during surveys. We determined the types of prey fed to Cassin’s auklet chicks by collecting diet samples from provisioning adults. Using time-depth-recorders, we found Cassin’s auklets utilized consistent areas in the upper water column, less than 30 m, where krill could be found (99.5% of dives were less than 30 m). Birds primarily preyed upon two species of euphausiids, Euphausia pacifica and Thysanoessa spinifera, which were available in the upper water column. Cassin’s auklet abundance was best predicted by both large scale and localized oceanic processes (upwelling) while krill biomass was best predicted by local factors (temperature, salinity, and fluorescence) and both large scale and localized oceanic processes (upwelling). Models predicted varying krill and bird distribution by month and year. Our work informs the use of Cassin’s auklet as a valuable indicator or krill abundance and distribution and strengthens our understanding of the link between Cassin’s auklet and its primary prey. We expect future increases in frequency and magnitude of anomalous ocean conditions will result in decreased availability of krill leading to declines in the Farallon Islands population of Cassin’s auklets. PMID:26629818

  13. Assessment of spatial and temporal patterns of green and blue water flows in inland river basins in Northwest China

    NASA Astrophysics Data System (ADS)

    Zang, C. F.; Liu, J.; van der Velde, M.; Kraxner, F.

    2012-03-01

    In arid and semi-arid regions freshwater resources have become scarcer with increasing demands from socio-economic development and population growth. Until recently, water research and management in these has mainly focused on blue water but ignored green water. Here we report on spatial and temporal patterns of both blue and green water flows simulated by the Soil and Water Assessment Tool (SWAT) for the Heihe river basin, the second largest inland river basin in Northwest China. Calibration and validation at two hydrological stations show good performance of the SWAT model in modelling hydrological processes. The total green and blue water flows were 22.09 billion m3 in the 2000s for the Heihe river basin. Blue water flows are larger in upstream sub-basins than in downstream sub-basins mainly due to high precipitation and large areas of glaciers in upstream. Green water flows are distributed more homogeneously among different sub-basins. The green water coefficient was 88.0% in the 2000s for the entire river basin, varying from around 80-90% in up- and mid-stream sub-basins to above 95% in downstream sub-basins. This is much higher than reported green water coefficient in many other river basins. The spatial patterns of green water coefficient were closely linked to dominant land covers (e.g. glaciers in upstream and desert in downstream) and climate conditions (e.g. high precipitation in upstream and low precipitation in downstream). There are no clear consistent historical trends of change in green and blue water flows and green water coefficient at both the river basin and sub-basin levels. This study provides insights into green and blue water endowments for the entire Heihe river basin at sub-basin level. The results are helpful for formulating reasonable water policies to improve water resources management in the inland river basins of China.

  14. Identification of Temporal and Region-Specific Myocardial Gene Expression Patterns in Response to Infarction in Swine

    PubMed Central

    Nonell, Lara; Puigdecanet, Eulàlia; Astier, Laura; Solé, Francesc; Bayes-Genis, Antoni

    2013-01-01

    Molecular mechanisms associated with pathophysiological changes in ventricular remodelling due to myocardial infarction (MI) remain poorly understood. We analyzed changes in gene expression by microarray technology in porcine myocardial tissue at 1, 4, and 6 weeks post-MI. MI was induced by coronary artery ligation in 9 female pigs (30–40 kg). Animals were randomly sacrificed at 1, 4, or 6 weeks post-MI (n?=?3 per group) and 3 healthy animals were also included as control group. Total RNA from myocardial samples was hybridized to GeneChip® Porcine Genome Arrays. Functional analysis was obtained with the Ingenuity Pathway Analysis (IPA) online tool. Validation of microarray data was performed by quantitative real-time PCR (qRT-PCR). More than 8,000 different probe sets showed altered expression in the remodelling myocardium at 1, 4, or 6 weeks post-MI. Ninety-seven percent of altered transcripts were detected in the infarct core and 255 probe sets were differentially expressed in the remote myocardium. Functional analysis revealed 28 genes de-regulated in the remote myocardial region in at least one of the three temporal analyzed stages, including genes associated with heart failure (HF), systemic sclerosis and coronary artery disease. In the infarct core tissue, eight major time-dependent gene expression patterns were recognized among 4,221 probe sets commonly altered over time. Altered gene expression of ACVR2B, BID, BMP2, BMPR1A, LMNA, NFKBIA, SMAD1, TGFB3, TNFRSF1A, and TP53 were further validated. The clustering of similar expression patterns for gene products with related function revealed molecular footprints, some of them described for the first time, which elucidate changes in biological processes at different stages after MI. PMID:23372767

  15. Patterns of Spatial and Temporal Distribution of Humpback Whales at the Southern Limit of the Southeast Pacific Breeding Area

    PubMed Central

    Guidino, Chiara; Llapapasca, Miguel A.; Silva, Sebastian; Alcorta, Belen; Pacheco, Aldo S.

    2014-01-01

    Understanding the patterns of spatial and temporal distribution in threshold habitats of highly migratory and endangered species is important for understanding their habitat requirements and recovery trends. Herein, we present new data about the distribution of humpback whales (Megaptera novaeangliae) in neritic waters off the northern coast of Peru: an area that constitutes a transitional path from cold, upwelling waters to warm equatorial waters where the breeding habitat is located. Data was collected during four consecutive austral winter/spring seasons from 2010 to 2013, using whale-watching boats as platforms for research. A total of 1048 whales distributed between 487 groups were sighted. The spatial distribution of humpbacks resembled the characteristic segregation of whale groups according to their size/age class and social context in breeding habitats; mother and calf pairs were present in very shallow waters close to the coast, while dyads, trios or more whales were widely distributed from shallow to moderate depths over the continental shelf break. Sea surface temperatures (range: 18.2–25.9°C) in coastal waters were slightly colder than those closer to the oceanic realm, likely due to the influence of cold upwelled waters from the Humboldt Current system. Our results provide new evidence of the southward extension of the breeding region of humpback whales in the Southeast Pacific. Integrating this information with the knowledge from the rest of the breeding region and foraging grounds would enhance our current understanding of population dynamics and recovery trends of this species. PMID:25391137

  16. Granger causality analysis reveals distinct spatio-temporal connectivity patterns in motor and perceptual visuo-spatial working memory

    PubMed Central

    Protopapa, Foteini; Siettos, Constantinos I.; Evdokimidis, Ioannis; Smyrnis, Nikolaos

    2014-01-01

    We employed spectral Granger causality analysis on a full set of 56 electroencephalographic recordings acquired during the execution of either a 2D movement pointing or a perceptual (yes/no) change detection task with memory and non-memory conditions. On the basis of network characteristics across frequency bands, we provide evidence for the full dissociation of the corresponding cognitive processes. Movement-memory trial types exhibited higher degree nodes during the first 2 s of the delay period, mainly at central, left frontal and right-parietal areas. Change detection-memory trial types resulted in a three-peak temporal pattern of the total degree with higher degree nodes emerging mainly at central, right frontal, and occipital areas. Functional connectivity networks resulting from non-memory trial types were characterized by more sparse structures for both tasks. The movement-memory trial types encompassed an apparent coarse flow from frontal to parietal areas while the opposite flow from occipital, parietal to central and frontal areas was evident for the change detection-memory trial types. The differences among tasks and conditions were more profound in ? (8–12 Hz) and ? (12–30 Hz) and less in ? (30–45 Hz) band. Our results favor the hypothesis which considers spatial working memory as a by-product of specific mental processes that engages common brain areas under different network organizations. PMID:25431557

  17. A temporal assessment of vehicle use patterns and their impact on the provision of vehicle-to-grid services

    NASA Astrophysics Data System (ADS)

    Harris, Chioke B.; Webber, Michael E.

    2012-09-01

    With the emerging nationwide availability of battery electric vehicles (BEVs) at prices attainable for many consumers, electric utilities, system operators and researchers have been investigating the impact of this new source of energy demand. The presence of BEVs on the electric grid might offer benefits equivalent to dedicated utility-scale energy storage systems by leveraging vehicles’ grid-connected energy storage through vehicle-to-grid (V2G) enabled infrastructure. It is, however, unclear whether BEVs will be available to provide needed grid services when those services are in highest demand. In this work, a set of GPS vehicle travel data from the Puget Sound Regional Council (PSRC) is analyzed to assess temporal patterns in vehicle use. These results show that vehicle use does not vary significantly across months, but differs noticeably between weekdays and weekends, such that averaging the data together could lead to erroneous V2G modeling results. Combination of these trends with wind generation and electricity demand data from the Electric Reliability Council of Texas (ERCOT) indicates that BEV availability does not align well with electricity demand and wind generation during the summer months, limiting the quantity of ancillary services that could be provided with V2G. Vehicle availability aligns best between the hours of 9 pm and 8 am during cooler months of the year, when electricity demand is bimodal and brackets the hours of highest vehicle use.

  18. Temporal, Spatial, and Diurnal Patterns in Avian Activity at the Shuttle Landing Facility, John F. Kennedy Space Center, Florida, USA

    NASA Technical Reports Server (NTRS)

    Larson, Vickie L.; Rowe, Sean P.; Breininger, David R.

    1997-01-01

    Spatial and temporal patterns in bird abundance within the five-mile airspace at the Shuttle Landing Facility (SLF) on John F. Kennedy Space Center (KSC), Florida, USA were investigated for purposes of quantifying Bird Aircraft Strike Hazards (BASH). The airspace is surrounded by the Merritt Island National Wildlife Refuge (MINWR) which provides habitat for approximately 331 resident and migratory bird species. Potential bird strike hazards were greatest around sunrise and sunset for most avian taxonomic groups, including wading birds, most raptors, pelicans, gulls/terns, shorebirds, and passerines. Turkey Vultures and Black Vultures were identified as a primary threat to aircraft operations and were represented in 33% of the samples. Diurnal vulture activity varied seasonally with the development of air thermals in the airspace surrounding the SLF. Variation in the presence and abundance of migratory species was shown for American Robins, swallows, and several species of shorebirds. Analyses of bird activities provides for planning of avionics operations during periods of low-dsk and allows for risk minimization measures during periods of high-risk.

  19. Perfusion patterns in postictal 99mTc-HMPAO SPECT after coregistration with MRI in patients with mesial temporal lobe epilepsy

    PubMed Central

    Hogan, R; Cook, M.; Binns, D.; Desmond, P.; Kilpatrick, C.; Murrie, V.; Morris, K.

    1997-01-01

    OBJECTIVES—To assess patterns of postictal cerebral blood flow in the mesial temporal lobe by coregistration of postictal 99mTc-HMPAO SPECT with MRI in patients with confirmed mesial temporal lobe epilepsy.?METHODS—Ten postictal and interictal 99mTc-HMPAO SPECT scans were coregistered with MRI in 10 patients with confirmed mesial temporal lobe epilepsy. Volumetric tracings of the hippocampus and amygdala from the MRI were superimposed on the postictal and interictal SPECT. Asymmetries in hippocampal and amygdala SPECT signal were then calculated using the equation:? % Asymmetry =100 × (right ? left) / (right + left)/2.?RESULTS—In the postictal studies, quantitative measurements of amygdala SPECT intensities were greatest on the side of seizure onset in all cases, with an average % asymmetry of 11.1, range 5.2-21.9.Hippocampal intensities were greatest on the side of seizure onset in six studies, with an average % asymmetry of 9.6, range 4.7-12.0.In four scans the hippocampal intensities were less on the side of seizure onset, with an average % asymmetry of 10.2, range 5.7-15.5.There was no localising quantitative pattern in interictal studies.?CONCLUSIONS—Postictal SPECT shows distinctive perfusion patterns when coregistered with MRI, which assist in lateralisation of temporal lobe seizures. Hyperperfusion in the region of the amygdala is more consistently lateralising than hyperperfusion in the region of the hippocampus in postictal studies.?? PMID:9285464

  20. Mean, variance, and temporal coherence of the 3D acoustic field forward propagated through random inhomogeneities in continental-shelf and deep ocean waveguides

    E-print Network

    Chen, Tianrun

    2009-01-01

    When an acoustic field propagates through a multimodal waveguide, the effect of variations in medium properties induced by 3D random inhomogeneities accumulates by multiple forward scattering over range. This causes ...

  1. Observing and predicting the spatial-temporal pattern of runoff generation processes from the watershed to the regional scale

    NASA Astrophysics Data System (ADS)

    Weiler, M.

    2012-12-01

    Runoff generation processes are the key to understand and predict watershed dynamics and behaviour under current as well as under changing conditions. A variety of approaches have been developed to observe these processes at the plot scale (e.g. infiltration and sprinkling experiments), the hillslope scale (soil moisture and piezometer networks and trenching) and the watershed scale (hydrograph separation with stable isotopes and natural tracers). However, predicting the four major runoff generation mechanisms (infiltration excess, saturation excess, subsurface flow and deep percolation) without detailed observation in ungauged watershed is still a challenge, but a prerequisite to track water flow pathways and to make adequate prediction for hydrological extremes. Methods have been developed to map dominant runoff generation processes in the field and with digital maps, however, these methods are often static and do not consider the temporal dynamics of runoff generation processes frequently observed with the various experimental approaches. The recently developed parsimonious rainfall-runoff model DROGen can bridge the gap between across spatial scales in ungauged watersheds since parameters are not calibrated. The model incorporates high-resolution GIS data (1m resolution DEM, land-use, impervious surfaces), hydro-geological and pedological data as well as information about the effect of macropores and preferential flow pathways on runoff generation processes with a comprehensive knowledge base from various field observations and experiments. The model was applied to over 6500 meso-scale watershed in the State of Baden-Württemberg in Germany and 15 gauged watersheds were selected for detailed model evaluation. The evaluation was done with field-mapping of runoff generation processes for direct comparison with the simulated pattern of runoff processes for different types of precipitation (high intensity and short duration / low intensity and long duration) and benchmarking of several observed floods in these watersheds. The simulated patterns were analysed in more detail to gain a better understanding of the initial conditions (soil moisture) and different precipitation events and to derive scaling relationships. The model DROGen is different from many other model approaches not only with respect to spatial resolution and model calibration, but in particular by incorporating a detailed understanding of hydrological processes, obtained from many experimental studies on runoff generation at the plot and hillslope scale worldwide.

  2. Spatio-temporal variability of dry and wet periods in mainland Portugal and its relationships with teleconnection patterns

    NASA Astrophysics Data System (ADS)

    Espírito Santo, Fátima; de Lima, Isabel P.; Silva, Álvaro; Pires, Vanda; de Lima, João L. M. P.

    2014-05-01

    Large-scale atmospheric circulation patterns and their persistence are known to drive inter-annual variability of precipitation in Europe, although depending on geographical location; this includes precipitation extremes and their trends. The vast range of time and space scales involved leads sometimes to precipitation deficits and surpluses which might affect in a different way the society, the environment and the economy at the local and regional scales, depending on specific conditions. In addition, changes in the climate are expected to affect the occurrence of extreme weather and climate events that might influence significantly the distribution, availability and sustainability of regional water resources. The location of mainland Portugal on the Northeast Atlantic region, in South-western Europe, together with other geographical features, makes this territory vulnerable to extreme dry/wet hydro-meteorological events, driven by the strong variability in precipitation. In our study we discuss, for this territory, the relation between the spatio-temporal variability in those events, including their persistence at different scales, and the variability in several modes of low frequency variability; special attention is dedicated to the North Atlantic Oscillation (NAO) and Scandinavian pattern (SCAND). Some of these dry/wet episodes affect different aspects of the hydrologic cycle and are likely to lead to drought and soil wetness/saturation conditions that can enhance flood events. Such episodes were categorized here using the Standardized Precipitation Index (SPI), which was calculated at short (3 and 6-month) and long (12 and 24-month) time scales from monthly precipitation data recorded in the 1941-2012 period (72 years) at 50 precipitation stations scattered across the study area. Moreover, because SPI is a normalized index, it is also suitable to provide spatial representations of these conditions, allowing the comparison between areas within the same region. Thus, indices were interpolated for the whole territory using deterministic and geostatistical methods, and the zonal statistics results were mapped; the spatial interpolation, analysis and mapping were implemented in ArcGIS. Results confirm that the precipitation in this region is strongly influenced by the NAO and SCAND, in particular in the wettest months. Moreover, the annual SPI shows a significant increase in the extent of dry extremes and a non-significant decrease in the extent of wet extremes. For shorter time scales, the behaviour depends on the season. We discuss the observed SPI trends and the uncertainties for the precipitation regime in the southern and western parts of the Iberian Peninsula, which includes mainland Portugal. Results underline potential applications of SPI for water resources management, which is discussed in the context of the regional hydrological conditions and increasing demand for water for different uses.

  3. Incorporating NDVI in a gravity model setting to describe spatio-temporal patterns of Lyme borreliosis incidence

    NASA Astrophysics Data System (ADS)

    Barrios, J. M.; Verstraeten, W. W.; Farifteh, J.; Maes, P.; Aerts, J. M.; Coppin, P.

    2012-04-01

    Lyme borreliosis (LB) is the most common tick-borne disease in Europe and incidence growth has been reported in several European countries during the last decade. LB is caused by the bacterium Borrelia burgdorferi and the main vector of this pathogen in Europe is the tick Ixodes ricinus. LB incidence and spatial spread is greatly dependent on environmental conditions impacting habitat, demography and trophic interactions of ticks and the wide range of organisms ticks parasite. The landscape configuration is also a major determinant of tick habitat conditions and -very important- of the fashion and intensity of human interaction with vegetated areas, i.e. human exposure to the pathogen. Hence, spatial notions as distance and adjacency between urban and vegetated environments are related to human exposure to tick bites and, thus, to risk. This work tested the adequacy of a gravity model setting to model the observed spatio-temporal pattern of LB as a function of location and size of urban and vegetated areas and the seasonal and annual change in the vegetation dynamics as expressed by MODIS NDVI. Opting for this approach implies an analogy with Newton's law of universal gravitation in which the attraction forces between two bodies are directly proportional to the bodies mass and inversely proportional to distance. Similar implementations have proven useful in fields like trade modeling, health care service planning, disease mapping among other. In our implementation, the size of human settlements and vegetated systems and the distance separating these landscape elements are considered the 'bodies'; and the 'attraction' between them is an indicator of exposure to pathogen. A novel element of this implementation is the incorporation of NDVI to account for the seasonal and annual variation in risk. The importance of incorporating this indicator of vegetation activity resides in the fact that alterations of LB incidence pattern observed the last decade have been ascribed to changes in vector habitat induced by a changing climate. Hence, the incorporation of dynamic covariates in epidemiologic modelling schemes is necessary. Preliminary results of this on-going analysis reveal the great potential of this modeling approach to base the incorporation of remotely sensed information of the environment in monitoring shrinkages and expansions of risk zones in this - and probably other - vector-borne disease.

  4. Finite element model of surface acoustic wave method for mechanical characterization of patterned thin films of the ultra-large scaled integrated interconnect.

    PubMed

    Xiao, Xia; Shan, Xingmeng; Tao, Ye; Sun, Yuan; Kikkawa, Takamaro

    2013-02-01

    Surface acoustic waves (SAWs) technique is a promising method to determine the mechanical properties of thin low dielectric constant (low-k) dielectrics by matching the experimental dispersion curve with the theoretical dispersion curves. However, it is difficult to calculate the dispersion curves when SAWs propagate along patterned structure. In this paper, finite element method (FEM) is applied to obtain the numerical dispersion results of SAWs propagating on patterned film. Periodic boundary condition and plane-strain model is used to improve the computation speed. Four structures of bulk silicon, single layered low-k film, two layered Cu and SiO2 film, and patterned film, are simulated in this paper. The dispersion curves of single low-k films derived from the FEM simulation agree very well with those calculated by traditional method, which verifies the correct employment of the FEM approach. Dispersion curves of two patterned film structure of Cu and SiO2 with difference metal wire width are obtained. Effective Young's moduli are achieved by fitting the FEM simulated results with those of traditional theoretical calculation through least square error method. PMID:23646690

  5. Reconstructing spatial and temporal patterns of soil formation in an anthropogenic drift sand area in Northeastern Germany

    NASA Astrophysics Data System (ADS)

    Schneider, Anna; Hirsch, Florian; Raab, Thomas; Wechler, Klaus-Peter

    2015-04-01

    On the sandy deposits of the Weichselian glaciation, soils developed during periods of landscape stability are often conserved under windblown sand. The relatively diverse morphology of dune areas and the possibilities for dating the accumulation of windblown sediment offer good opportunities to improve the understanding of spatial and temporal patterns of soil formation. However, a mapping of the buried soils and surfaces is often limited to single outcrops. In the forefield of the open-cast mine Cottbus-Nord, archaeological excavations in an about 10 ha dune and drift sand area revealed widespread buried soils, mainly podzols, of different characteristics. Archaeological findings give evidence for the age of the buried surfaces. The densely spaced excavation trenches allow for reconstructing the distribution of fossil and recent soils in a high spatial resolution. We created and analyzed digital models of the recent surface and the buried soils using a combination of methods: To characterize the recent ground surface, we used microdrone-based photogrammetry, LIDAR-based elevation data and GPS. To create a digital model of the palaeosurface and the distribution of fossil soils, we used soil and sedimentological mapping along excavation trenches, mapping of the elevation of excavated palaeosurfaces, and prospection of the fossil soils by Ground Penetrating Radar. Our studies reveal a high vertical and horizontal heterogeneity of soils, with varying thicknesses of eluvial and illuvial horizons and varying degrees of organic compound and sesquioxide accumulation. First results reflect several phases of landscape development: i) the formation of a Late Pleistocene soil on fluvio-eolian deposits, ii) a fossilization by eolian sands which underwent intensive podsolization, and iii) a land use-induced eolian remobilization of the sands. The soil characteristics' spatial distribution in relation to surface morphology indicates a high relevance of lateral leachate transport, even along very low gradients.

  6. Assessing the regional spatio-temporal pattern of water stress: A case study in Zhangye City of China

    NASA Astrophysics Data System (ADS)

    Zhang, Qian; Liu, Bing; Zhang, Weige; Jin, Gui; Li, Zhaohua

    Water scarcity and stress have attracted increasing attention as water has become increasingly regarded as one of the most critical resources in the world's sustainable development. The Water Poverty Index (WPI), an interdisciplinary but straightforward measure that considers water availability from both the bio-geophysical perspective and the socio-economic perspective of people's capacity to access water, has been successfully applied at national, regional, and local levels around the world. However, the general assessment of water stress at a macro level over only a snapshot limits the understanding of the geographic differences in and dynamics of water stress; this will, in turn, mislead decision-makers and may result in improper water strategies being implemented. In addition, to date, the typologies and trajectories of water stress have been underexplored. To fill this knowledge gap, we examine the spatio-temporal patterns, trajectories, and typologies of water stress using an adapted WPI for six counties in Zhangye City, which lies within an arid region of China, in order to provide policy priorities for each county. The results of our assessment indicate that water stress has become more severe over time (2005-2011) in most of the counties in Zhangye City. The results also show a distinct spatial variation in water scarcity and stress. Specifically, the results for Shandan county reflect its progressive policies on water access and management, and this county is regarded as engaging in good water governance. In contrast, Ganzhou district has faced more severe water pressure and is regarded as practicing poor water governance. Typology results show that each county faces its own particular challenges and opportunities in the context of water scarcity and stress. In addition, the trajectory map reveals that none of the counties has shown substantial improvement in both water access and management, a finding that should draw decision-makers' close attention.

  7. Distribution of Escherichia coli in a coastal lagoon (Venice, Italy): Temporal patterns, genetic diversity and the role of tidal forcing.

    PubMed

    Perini, L; Quero, G M; Serrano García, E; Luna, G M

    2015-12-15

    Despite its worldwide importance as fecal indicator in aquatic systems, little is known about the diversity of Escherichia coli in the environment and the factors driving its spatial distribution. The city of Venice (Italy), lying at the forefront of a large European lagoon, is an ideal site to study the mechanisms driving the fate of fecal bacteria, due to the huge fluxes of tourists, the city's unique architecture (causing poor efficiency of sewages treatment), and the long branching network of canals crossing the city. We summarize the results of a multi-year investigation to study the temporal dynamics of E. coli around the city, describe the population structure (by assigning isolates to their phylogenetic group) and the genotypic diversity, and explore the role of environmental factors in determining its variability. E. coli abundance in water was highly variable, ranging from being undetectable up to 10(4) Colony Forming Units (CFU) per 100 ml. Abundance did not display significant relationships with the water physico-chemical variables. The analysis of the population structure showed the presence of all known phylogroups, including extra-intestinal and potentially pathogenic ones. The genotypic diversity was very high, as likely consequence of the heterogeneous input of fecal bacteria from the city, and showed site-specific patterns. Intensive sampling during the tidal fluctuations highlighted the prominent role of tides, rather than environmental variables, as source of spatial variation, with a more evident influence in water than sediments. These results, the first providing information on the genetic properties, spatial heterogeneity and influence of tides on E. coli populations around Venice, have implications to manage the fecal pollution, and the associated waterborne disease risks, in coastal cities lying in front of lagoons and semi-enclosed basins. PMID:26402879

  8. Spatial and temporal expression patterns of diverse Pin-II proteinase inhibitor genes in Capsicum annuum Linn.

    PubMed

    Tamhane, Vaijayanti A; Giri, Ashok P; Kumar, Pavan; Gupta, Vidya S

    2009-08-01

    Pin-II type proteinase inhibitor (PI) genes were cloned from fruit and stem tissues of Capsicum annuum L. var Phule Jyoti using primers designed from reported CanPI gene sequence (AF039398). In total, 21 novel CanPIs, members of the Pin-II PI family, were identified in the study, with three isoforms of 1-inhibitory repeat domain (IRD), eight isoforms of 2-IRD, three isoforms of 3-IRD, five isoforms of 4-IRD and two partial CanPI sequences. Most of the sequences showed variation (2 to 20%) in the deduced AA sequences which were pronounced close to the reactive site loop. Expression patterns of CanPIs in the fruit and stem tissues of mature C. annuum plants were shown to vary qualitatively and quantitatively using semi-quantitative RT-PCR expression analysis. In the fruit tissue, CanPIs with different IRDs (from 1 to 4) were expressed simultaneously. In stem tissue, 1- and 2-IRD CanPIs were strongly expressed along moderate expression of 3- and 4-IRD genes. Analysis of CanPI protein activity showed a range of active forms across the tissues. CanPI expression was differentially up-regulated upon wounding and insect attack. Although infestation by aphids (Myzus persicae) and lepidopteran pests (Spodoptera litura) specifically induced 4-IRD CanPIs, virus-infected leaves did not affect CanPI expression. Analysis of CanPI protein activity indicated that the up-regulation in CanPI expression was not always correlated with increase in PI activity. Our results demonstrated that CanPI expression is regulated spatially, temporally as well as qualitatively and quantitatively. PMID:19393726

  9. Temporal and spatial patterns of endogenous danger signal expression after wound healing and in response to lymphedema

    PubMed Central

    Zampell, Jamie C.; Yan, Alan; Avraham, Tomer; Andrade, Victor; Malliaris, Stephanie; Aschen, Seth; Rockson, Stanley G.

    2011-01-01

    While acute tissue injury potently induces endogenous danger signal expression, the role of these molecules in chronic wound healing and lymphedema is undefined. The purpose of this study was to determine the spatial and temporal expression patterns of the endogenous danger signals high-mobility group box 1 (HMGB1) and heat shock protein (HSP)70 during wound healing and chronic lymphatic fluid stasis. In a surgical mouse tail model of tissue injury and lymphedema, HMGB1 and HSP70 expression occurred along a spatial gradient relative to the site of injury, with peak expression at the wound and greater than twofold reduced expression within 5 mm (P < 0.05). Expression primarily occurred in cells native to injured tissue. In particular, HMGB1 was highly expressed by lymphatic endothelial cells (>40% positivity; twofold increase in chronic inflammation, P < 0.001). We found similar findings using a peritoneal inflammation model. Interestingly, upregulation of HMGB1 (2.2-fold), HSP70 (1.4-fold), and nuclear factor (NF)-?? activation persisted at least 6 wk postoperatively only in lymphedematous tissues. Similarly, we found upregulation of endogenous danger signals in soft tissue of the arm after axillary lymphadenectomy in a mouse model and in matched biopsy samples obtained from patients with secondary lymphedema comparing normal to lymphedematous arms (2.4-fold increased HMGB1, 1.9-fold increased HSP70; P < 0.01). Finally, HMGB1 blockade significantly reduced inflammatory lymphangiogenesis within inflamed draining lymph nodes (35% reduction, P < 0.01). In conclusion, HMGB1 and HSP70 are expressed along spatial gradients and upregulated in chronic lymphatic fluid stasis. Furthermore, acute expression of endogenous danger signals may play a role in inflammatory lymphangiogenesis. PMID:21248077

  10. Spatial and Temporal Patterns in Fish Assemblages Following an Artificially Extended Floodplain Inundation Event, Northern Murray-Darling Basin, Australia

    NASA Astrophysics Data System (ADS)

    Rolls, Robert J.; Wilson, G. Glenn

    2010-04-01

    Water extraction from dryland rivers is often associated with declines in the health of river and floodplain ecosystems due to reduced flooding frequency and extent of floodplain inundation. Following moderate flooding in early 2008 in the Narran River, Murray-Darling Basin, Australia, 10,423 ML of water was purchased from agricultural water users and delivered to the river to prolong inundation of its terminal lake system to improve the recruitment success of colonial waterbirds that had started breeding in response to the initial flooding. This study examined the spatial and temporal patterns of fish assemblages in river and floodplain habitats over eight months following flooding to assess the possible ecological benefits of flood extension. Although the abundances of most fish species were greater in river channel habitats, the fish assemblage used floodplain habitats when inundated. Young-of-the-year (4-12 months age) golden perch ( Macquaria ambigua) and bony bream ( Nematalosa erebi) were consistently sampled in floodplain sites when inundated, suggesting that the floodplain provides rearing habitat for these species. Significant differences in the abundances of fish populations between reaches upstream and downstream of a weir in the main river channel indicates that the effectiveness of the environmental water release was limited by restricted connectivity within the broader catchment. Although the seasonal timing of flood extension may have coincided with sub-optimal primary production, the use of the environmental water purchase is likely to have promoted recruitment of fish populations by providing greater access to floodplain nursery habitats, thereby improving the ability to persist during years of little or no flow.

  11. Spatial and temporal patterns of recent and future climate extremes in the Eastern Mediterranean and Middle East region

    NASA Astrophysics Data System (ADS)

    Kostopoulou, E.; Giannakopoulos, C.; Hatzaki, M.; Karali, A.; Hadjinicolaou, P.; Lelieveld, J.; Lange, M. A.

    2013-09-01

    Recent and future changes in temperature and precipitation climate extremes are estimated using the Hadley Centre PRECIS climate model for the Eastern Mediterranean and Middle East region. The area of interest is considered vulnerable to extreme climate events as there is evidence for a temperature rise while precipitation tends to decline, suggesting likely effects on vital socioeconomic sectors in the region. Observations have been obtained for the recent period (1961-1990) and used to evaluate the model output. The spatial distribution of recent temporal trends in temperature indicates strong increasing in minimum temperature over the eastern Balkan Peninsula, Turkey and the Arabian Peninsula. The rate of warming reaches 0.4-0.5 °C decade-1 in a large part of the domain, while warming is expected to be strongest in summer (0.6-0.7 °C decade-1) in the E-Balkans and W-Turkey. The trends in annual and summer maximum temperature are estimated at approximately 0.5 and 0.6 °C decade-1. Recent estimates do not indicate statistically significant trends in precipitation except for individual sub-regions. Results indicate a future warming trend for the study area over the last 30 yr of the 21st century. Trends are estimated to be positive and statistically significant in nearly the entire region. The annual trend patterns for both minimum and maximum temperature show warming rates of approximately 0.4-0.6 °C decade-1, with pronounced warming over the Middle Eastern countries. Summer temperatures reveal a gradual warming (0.5-0.9 °C decade-1) over much of the region. The model projects drying trends by 5-30% in annual precipitation towards the end of the 21st century, with the number of wet days decreasing at the rate of 10-30 days yr-1, while heavy precipitation is likely to decrease in the high-elevation areas by 15 days yr-1.

  12. Spatio-temporal patterns of recent and future climate extremes in the eastern Mediterranean and Middle East region

    NASA Astrophysics Data System (ADS)

    Kostopoulou, E.; Giannakopoulos, C.; Hatzaki, M.; Karali, A.; Hadjinicolaou, P.; Lelieveld, J.; Lange, M. A.

    2014-06-01

    Recent and future changes in temperature and precipitation climate extremes are estimated using the Hadley Centre PRECIS ("Providing REgional Climates for Impacts Studies") climate model for the eastern Mediterranean and Middle East region. The area of interest is considered vulnerable to extreme climate events as there is evidence for a temperature rise while precipitation tends to decline, suggesting likely effects on vital socioeconomic sectors in the region. Observations have been obtained for the recent period (1961-1990) and used to evaluate the model output. The spatial distribution of recent temporal trends in temperature indicates strong increasing in minimum temperature over the eastern Balkan Peninsula, Turkey and the Arabian Peninsula. The rate of warming reaches 0.4-0.5 °C decade-1 in a large part of the domain, while warming is expected to be strongest in summer (0.6-0.7 °C decade-1) in the eastern Balkans and western Turkey. The trends in annual and summer maximum temperature are estimated at approximately 0.5 and 0.6 °C decade-1 respectively. Recent estimates do not indicate statistically significant trends in precipitation except for individual sub-regions. Results indicate a future warming trend for the study area over the last 30 years of the 21st century. Trends are estimated to be positive and statistically significant in nearly the entire region. The annual trend patterns for both minimum and maximum temperature show warming rates of approximately 0.4-0.6 °C decade-1, with pronounced warming over the Middle Eastern countries. Summer temperatures reveal a gradual warming (0.5-0.9 °C decade-1) over much of the region. The model projects drying trends by 5-30% in annual precipitation towards the end of the 21st century, with the number of wet days decreasing at the rate of 10-30 days year-1, while heavy precipitation is likely to decrease in the high-elevation areas by 15 days year-1.

  13. Quantifying Spatio-Temporal Change Of Urban Land Cover/Use And Landscape Pattern Using BJ1 And CBERS Remote Sensing Images: A Case Study Of Shanghai

    NASA Astrophysics Data System (ADS)

    Xia, Junshi; Du, Peijun; Liu, Pei; Shan, Dandan; Ban, Yifang

    2010-10-01

    The overall objective of this research is to investigate the effectiveness of BJ-1 and CBERS remote sensing images for monitoring and modeling the spatial-temporal pattern change in Shanghai city. In this study, a scene of BJ-1 and two scenes of CBERS 01/02 images were used as the data sources. Comparing the accuracy of maximum likelihood classifier (MLC) and support vector machine (SVM) with two different kernel functions, the highest one in each temporal was chosen to analyze the typical ground objects and landscape pattern change. Gradient and direction characteristic analysis were also applied to calculate the degree and direction of urban growth. We selected some human and natural indicators from the Shanghai Statistical Yearbook to analyze the driving force of Shanghai. The results indicated that urbanization in Shanghai tended to be marginalization. And the urban growth has occurred in the NE-E and SE-S direction regions (Pudong New Area and Sanlin Area).

  14. An observational study of the temporal and spatial patterns of Marek's-disease-associated leukosis condemnation of young chickens in the United States of America.

    PubMed

    Kennedy, David A; Dunn, John R; Dunn, Patricia A; Read, Andrew F

    2015-07-01

    Marek's disease, a disease primarily affecting immature chickens, is a worldwide problem that has on at least three occasions threatened the poultry industry in the United States. A rich dataset to study the epidemiology of this disease is available because the United States Department of Agriculture has required mandatory inspections of all commercially sold poultry of significant scale since the mid-20th century with over 99% of all chickens inspected. This dataset includes monthly totals aggregated by state since 1961 of the number of "young chickens" inspected and the number with "leukosis", a condemnation category that is almost always associated with Marek's disease in this category of birds. The objective of this study was to analyze temporal and spatial patterns in this condemnation data to gain insight into the ecology and epidemiology of the causative virus. We extracted visual patterns in the data using seasonal trend decomposition, and we tested for statistical significance using extended linear modeling techniques. The analysis confirmed previous findings that there are differences in leukosis condemnation rates between states, across years, and within years. The analysis also revealed several patterns not previously highlighted, including spatial and temporal autocorrelations in leukosis condemnation, changes to the amplitude of seasonality over time, and increasing within-year variation in condemnation rate over time. These patterns suggest that locally shared farm practices, virus transmission between farms, or viral persistence may be important to understanding the dynamics of the disease. We also discuss the plausibility of other potential explanations for these patterns. PMID:25998661

  15. An auditory feature detection circuit for sound pattern recognition

    PubMed Central

    Schöneich, Stefan; Kostarakos, Konstantinos; Hedwig, Berthold

    2015-01-01

    From human language to birdsong and the chirps of insects, acoustic communication is based on amplitude and frequency modulation of sound signals. Whereas frequency processing starts at the level of the hearing organs, temporal features of the sound amplitude such as rhythms or pulse rates require processing by central auditory neurons. Besides several theoretical concepts, brain circuits that detect temporal features of a sound signal are poorly understood. We focused on acoustically communicating field crickets and show how five neurons in the brain of females form an auditory feature detector circuit for the pulse pattern of the male calling song. The processing is based on a coincidence detector mechanism that selectively responds when a direct neural response and an intrinsically delayed response to the sound pulses coincide. This circuit provides the basis for auditory mate recognition in field crickets and reveals a principal mechanism of sensory processing underlying the perception of temporal patterns. PMID:26601259

  16. Animal-Borne Acoustic Transceivers Reveal Patterns of at-Sea Associations in an Upper-Trophic Level Predator

    PubMed Central

    Lidgard, Damian C.; Bowen, W. Don; Jonsen, Ian D.; Iverson, Sara J.

    2012-01-01

    Satellite telemetry data have substantially increased our understanding of habitat use and foraging behaviour of upper-trophic marine predators, but fall short of providing an understanding of their social behaviour. We sought to determine whether novel acoustic and archival GPS data could be used to examine at-sea associations among grey seals (Halichoerus grypus) during the fall foraging period. Fifteen grey seals from Sable Island, Canada were deployed with Vemco Mobile Transceivers and Satellite-GPS transmitters in October 2009, 13 of which were recaptured and units retrieved 79±2.3 days later during the following breeding season, December 2009–January 2010. An association between two individuals was defined as a cluster of acoustic detections where the time between detections was <30 min. Bathymetry, travel rate, and behavioural state (slow and fast movement) were determined for each GPS archival point (3.7±0.1 locations recorded per hour). Behavioural state was estimated using a hidden Markov model. All seals had been involved in associations with other instrumented seals while at sea, with a total of 1,872 acoustic detections recorded in 201 associations. The median number of detections per association was 3 (range: 1–151) and the median duration of an association was 0.17 h (range: <0.1–11.3 h). Linear mixed-effects models showed that associations occurred when seals were exhibiting slow movement (0.24±0.01 ms?1) on shallow (53.4±3.7 m) offshore banks where dominant prey is known to occur. These results suggest the occurrence of short-term associations among multiple individuals at foraging grounds and provide new insights into the foraging ecology of this upper-trophic marine predator. PMID:23155435

  17. Acoustic stratigraphy of Bear Lake, Utah-Idaho: late Quaternary sedimentation patterns in a simple half-graben

    USGS Publications Warehouse

    Colman, Steven M.

    2006-01-01

    A 277-km network of high-resolution seismic-reflection profiles, supplemented with a sidescan-sonar mosaic of the lake floor, was collected in Bear Lake, Utah–Idaho, in order to explore the sedimentary framework of the lake's paleoclimate record. The acoustic stratigraphy is tied to a 120 m deep, continuously cored drill hole in the lake. Based on the age model for the drill core, the oldest continuously mapped acoustic reflector in the data set has an age of about 100 ka, although older sediments were locally imaged. The acoustic stratigraphy of the sediments below the lake indicates that the basin developed primarily as a simple half-graben, with a steep normal-fault margin on the east and a flexural margin on the west. As expected for a basin controlled by a listric master fault, seismic reflections steepen and diverge toward the fault, bounding eastward-thickening sediment wedges. Secondary normal faults west of the master fault were imaged beneath the lake and many of these faults show progressively increasing offset with depth and age. Several faults cut the youngest sediments in the lake as well as the modern lake floor. The relative simplicity of the sedimentary sequence is interrupted in the northwestern part of the basin by a unit that is interpreted as a large (4 × 10 km) paleodelta of the Bear River. The delta overlies a horizon with an age of about 97 ka, outcrops at the lake floor and is onlapped by much of the uppermost sequence of lake sediments. A feature interpreted as a wave-cut bench occurs in many places on the western side of the lake. The base of this bench occurs at a depth (22–24 m) similar to that (20–25 m) of the distal surface of the paleodelta. Pinch-outs of sedimentary units are common in relatively shallow water on the gentle western margin of the basin and little Holocene sediment has accumulated in water depths of less than 30 m. On the steep eastern margin of the basin, sediments commonly onlap the hanging wall of the East Bear Lake Fault. However, no major erosional or depositional features suggestive of shoreline processes were observed on acoustic profiles in water deeper than about 20–25 m.

  18. Primate Drum Kit: A System for Studying Acoustic Pattern Production by Non-Human Primates Using Acceleration and Strain Sensors

    PubMed Central

    Ravignani, Andrea; Olivera, Vicente Matellán; Gingras, Bruno; Hofer, Riccardo; Hernández, Carlos Rodríguez; Sonnweber, Ruth-Sophie; Fitch, W. Tecumseh

    2013-01-01

    The possibility of achieving experimentally controlled, non-vocal acoustic production in non-human primates is a key step to enable the testing of a number of hypotheses on primate behavior and cognition. However, no device or solution is currently available, with the use of sensors in non-human animals being almost exclusively devoted to applications in food industry and animal surveillance. Specifically, no device exists which simultaneously allows: (i) spontaneous production of sound or music by non-human animals via object manipulation, (ii) systematical recording of data sensed from these movements, (iii) the possibility to alter the acoustic feedback properties of the object using remote control. We present two prototypes we developed for application with chimpanzees (Pan troglodytes) which, while fulfilling the aforementioned requirements, allow to arbitrarily associate sounds to physical object movements. The prototypes differ in sensing technology, costs, intended use and construction requirements. One prototype uses four piezoelectric elements embedded between layers of Plexiglas and foam. Strain data is sent to a computer running Python through an Arduino board. A second prototype consists in a modified Wii Remote contained in a gum toy. Acceleration data is sent via Bluetooth to a computer running Max/MSP. We successfully pilot tested the first device with a group of chimpanzees. We foresee using these devices for a range of cognitive experiments. PMID:23912427

  19. Primate drum kit: a system for studying acoustic pattern production by non-human primates using acceleration and strain sensors.

    PubMed

    Ravignani, Andrea; Matellán Olivera, Vicente; Gingras, Bruno; Hofer, Riccardo; Rodríguez Hernández, Carlos; Sonnweber, Ruth-Sophie; Fitch, W Tecumseh

    2013-01-01

    The possibility of achieving experimentally controlled, non-vocal acoustic production in non-human primates is a key step to enable the testing of a number of hypotheses on primate behavior and cognition. However, no device or solution is currently available, with the use of sensors in non-human animals being almost exclusively devoted to applications in food industry and animal surveillance. Specifically, no device exists which simultaneously allows: (i) spontaneous production of sound or music by non-human animals via object manipulation, (ii) systematical recording of data sensed from these movements, (iii) the possibility to alter the acoustic feedback properties of the object using remote control. We present two prototypes we developed for application with chimpanzees (Pan troglodytes) which, while fulfilling the aforementioned requirements, allow to arbitrarily associate sounds to physical object movements. The prototypes differ in sensing technology, costs, intended use and construction requirements. One prototype uses four piezoelectric elements embedded between layers of Plexiglas and foam. Strain data is sent to a computer running Python through an Arduino board. A second prototype consists in a modified Wii Remote contained in a gum toy. Acceleration data is sent via Bluetooth to a computer running Max/MSP. We successfully pilot tested the first device with a group of chimpanzees. We foresee using these devices for a range of cognitive experiments. PMID:23912427

  20. Spatio-temporal patterns in vegetation start of season across the island of Ireland using the MERIS Global Vegetation Index

    NASA Astrophysics Data System (ADS)

    O'Connor, Brian; Dwyer, Edward; Cawkwell, Fiona; Eklundh, Lars

    2012-03-01

    Spring phenophases such as the beginning of leaf unfolding, measured in the Irish gardens of the International Phenological Garden (IPG) network, indicate an earlier spring occurrence hence a longer growing season. However, these measurements are limited to selected species of trees at a few point locations in the southern half of the country. The aim of this study was to develop a methodology, based on satellite remote sensing, to measure the vegetation start of season (SOS) across the whole island of Ireland on an annual basis, complementary to existing ground-based methods. The SOS metric was extracted for each year in a 7-year time series of 10-day composited, 1.2 km reduced resolution MERIS Global Vegetation Index (MGVI) data from 2003 to 2009, based on curve fitting, using the time series analysis software, TIMESAT. Spatio-temporal variability in the SOS was detected across the island on an annual basis and highlighted in a series of anomaly images showing variation from the 7-year mean SOS. The 2006 SOS was late across the island while there were strong geographical gradients to the SOS anomalies in 2009 when it occurred later in the south and earlier in the north. There was a mix of early and late anomaly values throughout the country in the other years. Qualitatively, the spatial patterns in the timing of the SOS were related to the distribution of landcover types as indicated by the CORINE Land Cover map (CLC). Three statistically separable groups of CLC classes were derived from differences in the SOS, namely agricultural and forest land cover types, peat bogs, and natural and semi-natural vegetation types. These groups demonstrated that vegetation in cultivated areas like pastures has a significantly earlier SOS than in areas of unmanaged vegetation such as peat bogs. An initial climate analysis indicated that an anomalously cold winter and spring in 2005/2006 delayed the 2006 SOS countrywide; while a cold winter followed by a mild spring in 2009 caused considerable spatial variability in the 2009 SOS across the country, ranging from later SOS in the south to early SOS in the north. This study has demonstrated the utility of 10-day MGVI composites for derivation of an SOS metric which can be used as an indicator of spatial variability in vegetation seasonality and has highlighted how SOS varies according to landcover type. The availability of longer time series in the future will allow more focused studies on the sensitivity of the SOS metric to changes in climate as well as short term weather events.

  1. Environmental surveillance of norovirus in Argentina revealed distinct viral diversity patterns, seasonality and spatio-temporal diffusion processes.

    PubMed

    Fernández, María D Blanco; Torres, Carolina; Poma, Hugo R; Riviello-López, Gabriela; Martínez, Laura C; Cisterna, Daniel M; Rajal, Verónica B; Nates, Silvia V; Mbayed, Viviana A

    2012-10-15

    Norovirus (NoV) contamination was evaluated in five rivers of Argentina between 2005 and 2011. NoV was present in all sampled rivers, with distinct NoV patterns in waters impacted by different-sized communities. In rivers affected by medium-sized populations (Salta and Córdoba cities) only one or two genotypes were present, GII.4 being the main one, with winter seasonality. In contrast, in the much more heavily populated area of Buenos Aires city the prevalent GII.4 was accompanied by several additional genotypes (GII.4, GII.b, GII.2, GII.7, GII.17, GII.e and GII.g) and one ungenotyped GII NoV, with no clear seasonality. GII.4 2006b was the main variant detected (60.9%). Phylogeographic and phylodynamic analyses performed in region D of the VP1 gene showed a most recent common ancestor in 2002 and a substitution rate of 3.7×10(-3) substitutions per site per year (HPD95%=2.3×10(-3)-5.2×10(-3)) for this variant still involving a significant population size with a slight decrease since 2008. The spatio-temporal diffusion analysis proposed Europe as an intermediate path between the American Continent and the rest of the World for NoV dissemination. Given the importance of NoV as a cause of epidemic gastroenteritis and the likelihood of its environmental transmission, the results of this work should increase public and institutional awareness of the health risk involved in sewage discharges into the environment. Environmental surveillance of enteric viruses could be a very useful tool not only to prevent waterborne outbreaks, but also to describe the epidemiology of the viruses. The detailed analysis of the viral genomes disposed into the environment contributed to the characterization of the dissemination, diversity and seasonality of NoV in its natural host population. In future studies, environmental surveillance and molecular analysis should be complemented with a quantitative viral risk assessment for estimating the disease burden from viruses in the environment. PMID:22944218

  2. Three-Dimensional and Multi-Temporal Dune-Field Pattern Analysis in the Olympia Undae Dune Field, Mars 

    E-print Network

    Middlebrook, William David

    2015-07-14

    Fields of sand dunes are ubiquitous in the north polar region of Mars and provide a record of sand transport processes influenced by Mars’ polar climate. Spatial and temporal variations in dunes, ripples, coarse-grained ripples, and exposed dune...

  3. TEMPORAL PATTERNS OF AIRBORNE PESTICIDES IN THE HABITATE OF THE MOUNTAIN YELLOW-LEGGED FROG IN THE SOUTHERN SIERRA NEVADA

    EPA Science Inventory

    Airborne agricultural pesticides from the Central Valley of California have been implicated as a possible cause for recent, dramatic population declines of several amphibian species in remote mountain locations. To determine the temporal variation of pesticide levels in the habit...

  4. Speech-clarity judgments of hearing-aid-processed speech in noise: differing polar patterns and acoustic environments.

    PubMed

    Amlani, Amyn M; Rakerd, Brad; Punch, Jerry L

    2006-06-01

    This investigation assessed the extent to which listeners' preferences for hearing aid microphone polar patterns vary across listening environments, and whether normal-hearing and inexperienced and experienced hearing-impaired listeners differ in such preferences. Paired-comparison judgments of speech clarity (i.e. subjective speech intelligibility) were made monaurally for recordings of speech in noise processed by a commercially available hearing aid programmed with an omnidirectional and two directional polar patterns (cardioid and hypercardioid). Testing environments included a sound-treated room, a living room, and a classroom. Polar-pattern preferences were highly reliable and agreed closely across all three groups of listeners. All groups preferred listening in the sound-treated room over listening in the living room, and preferred listening in the living room over listening in the classroom. Each group preferred the directional patterns to the omnidirectional pattern in all room conditions. We observed no differences in preference judgments between the two directional patterns or between hearing-impaired listeners' extent of amplification experience. Overall, findings indicate that listeners perceived qualitative benefits from microphones having directional polar patterns. PMID:16777778

  5. Farey sequences of spatiotemporal patterns in video feedback B. Essevaz-Roulet,1

    E-print Network

    Wesfreid, José Eduardo

    , the coupling mechanism diffu- sive or nonlocal, with specified long range correlation and nonlinear saturation. These patterns are very similar to the spatial transverse modes obtained in other optical devices such as lasers kind of temporal delayed physical information of acoustic or hydrodynamic nature. In laser physics

  6. Selective attention to temporal features on nested time scales.

    PubMed

    Henry, Molly J; Herrmann, Björn; Obleser, Jonas

    2015-02-01

    Meaningful auditory stimuli such as speech and music often vary simultaneously along multiple time scales. Thus, listeners must selectively attend to, and selectively ignore, separate but intertwined temporal features. The current study aimed to identify and characterize the neural network specifically involved in this feature-selective attention to time. We used a novel paradigm where listeners judged either the duration or modulation rate of auditory stimuli, and in which the stimulation, working memory demands, response requirements, and task difficulty were held constant. A first analysis identified all brain regions where individual brain activation patterns were correlated with individual behavioral performance patterns, which thus supported temporal judgments generically. A second analysis then isolated those brain regions that specifically regulated selective attention to temporal features: Neural responses in a bilateral fronto-parietal network including insular cortex and basal ganglia decreased with degree of change of the attended temporal feature. Critically, response patterns in these regions were inverted when the task required selectively ignoring this feature. The results demonstrate how the neural analysis of complex acoustic stimuli with multiple temporal features depends on a fronto-parietal network that simultaneously regulates the selective gain for attended and ignored temporal features. PMID:23978652

  7. Phase measurement in temporal speckle pattern interferometry signals presenting low-modulated regions by means of the bidimensional empirical mode decomposition

    SciTech Connect

    Bernini, Maria Belen; Federico, Alejandro; Kaufmann, Guillermo H.

    2011-02-10

    We propose a phase measurement technique to retrieve optical phase distributions coded in noisy temporal speckle pattern interferometry signals presenting regions of adjacent low-modulated pixels, which is based on the bidimensional empirical mode decomposition and the Hilbert transform. It is shown that this approach can effectively remove noise and minimize the influence of large sets of adjacent nonmodulated pixels located in the time series of speckle interferograms. The performance of the phase retrieval approach is analyzed using computer-simulated speckle interferograms modulated with a temporal carrier. The results are also compared with those given by a technique based on the one-dimensional empirical mode decomposition. The advantages and limitations of the proposed approach are finally discussed.

  8. Patterns in Temporal Variability of Temperature, Oxygen and pH along an Environmental Gradient in a Coral Reef

    PubMed Central

    Guadayol, Òscar; Silbiger, Nyssa J.; Donahue, Megan J.; Thomas, Florence I. M.

    2014-01-01

    Spatial and temporal environmental variability are important drivers of ecological processes at all scales. As new tools allow the in situ exploration of individual responses to fluctuations, ecologically meaningful ways of characterizing environmental variability at organism scales are needed. We investigated the fine-scale spatial heterogeneity of high-frequency temporal variability in temperature, dissolved oxygen concentration, and pH experienced by benthic organisms in a shallow coastal coral reef. We used a spatio-temporal sampling design, consisting of 21 short-term time-series located along a reef flat-to-reef slope transect, coupled to a long-term station monitoring water column changes. Spectral analyses revealed sharp gradients in variance decomposed by frequency, as well as differences between physically-driven and biologically-reactive parameters. These results highlight the importance of environmental variance at organismal scales and present a new sampling scheme for exploring this variability in situ. PMID:24416364

  9. An observational study of the temporal and spatial patterns of Marek’s-disease-associated leukosis condemnation of young chickens in the United States of America

    PubMed Central

    Dunn, John R.; Dunn, Patricia A.; Read, Andrew F.

    2015-01-01

    Marek’s disease, a disease primarily affecting immature chickens, is a worldwide problem that has on at least three occasions threatened the poultry industry in the United States. A rich dataset to study the epidemiology of this disease is available because the United States Department of Agriculture has required mandatory inspections of all commercially sold poultry of significant scale since the mid-20th century with over 99% of all chickens inspected. This dataset includes monthly totals aggregated by state since 1961 of the number of “young chickens” inspected and the number with “leukosis”, a condemnation category that is almost always associated with Marek’s disease in this category of birds. The objective of this study was to analyze temporal and spatial patterns in this condemnation data to gain insight into the ecology and epidemiology of the causative virus. We extracted visual patterns in the data using seasonal trend decomposition, and we tested for statistical significance using extended linear modeling techniques. The analysis confirmed previous findings that there are differences in leukosis condemnation rates between states, across years, and within years. The analysis also revealed several patterns not previously highlighted, including spatial and temporal autocorrelations in leukosis condemnation, changes to the amplitude of seasonality over time, and increasing within-year variation in condemnation rate over time. These patterns suggest that locally shared farm practices, virus transmission between farms, or viral persistence may be important to understanding the dynamics of the disease. We also discuss the plausibility of other potential explanations for these patterns. PMID:25998661

  10. ELECTROMAGNETISM, OPTICS, ACOUSTICS, HEAT TRANSFER, CLASSICAL MECHANICS, AND FLUID DYNAMICS: Effect of Viscosities on Mixing in A Patterned Micro Mixer

    NASA Astrophysics Data System (ADS)

    Hua, Shuo; Liu, Yang; Xu, You-Sheng

    2010-05-01

    The effect of viscosity and viscosity difference and boundary patterned slip on mixing in a micro mixer has been numerically studied using lattice Boltzmann method (LBM). The slip and no-slip ratio is not constant and varies irregularly, and viscosity is altered by changing the relaxation time in LBE equation. The slip boundary condition is simulated by specular reflection boundary and the no-slip boundary condition is simulated by bounce back boundary. It has been found that it is feasible to optimize the micro mixer design by combining the viscosity effect and boundary patterned ratio altogether.

  11. Time-resolved coherent X-ray diffraction imaging of surface acoustic waves

    PubMed Central

    Nicolas, Jan-David; Reusch, Tobias; Osterhoff, Markus; Sprung, Michael; Schülein, Florian J. R.; Krenner, Hubert J.; Wixforth, Achim; Salditt, Tim

    2014-01-01

    Time-resolved coherent X-ray diffraction experiments of standing surface acoustic waves, illuminated under grazing incidence by a nanofocused synchrotron beam, are reported. The data have been recorded in stroboscopic mode at controlled and varied phase between the acoustic frequency generator and the synchrotron bunch train. At each time delay (phase angle), the coherent far-field diffraction pattern in the small-angle regime is inverted by an iterative algorithm to yield the local instantaneous surface height profile along the optical axis. The results show that periodic nanoscale dynamics can be imaged at high temporal resolution in the range of 50?ps (pulse length). PMID:25294979

  12. Evaluation of spatial and temporal patterns of insect damage and aflatoxin level in the pre-harvest corn fields to improve management tactics.

    PubMed

    Ni, Xinzhi; Wilson, Jeffrey P; Toews, Michael D; Buntin, G David; Lee, R Dewey; Li, Xin; Lei, Zhongren; He, Kanglai; Xu, Wenwei; Li, Xianchun; Huffaker, Alisa; Schmelz, Eric A

    2014-10-01

    Spatial and temporal patterns of insect damage in relation to aflatoxin contamination in a corn field with plants of uniform genetic background are not well understood. After previous examination of spatial patterns of insect damage and aflatoxin in pre-harvest corn fields, we further examined both spatial and temporal patterns of cob- and kernel-feeding insect damage, and aflatoxin level with two samplings at pre-harvest in 2008 and 2009. The feeding damage by each of the ear/kernel-feeding insects (i.e., corn earworm/fall armyworm damage on the silk/cob, and discoloration of corn kernels by stink bugs) and maize weevil population were assessed at each grid point with five ears. Sampling data showed a field edge effect in both insect damage and aflatoxin contamination in both years. Maize weevils tended toward an aggregated distribution more frequently than either corn earworm or stink bug damage in both years. The frequency of detecting aggregated distribution for aflatoxin level was less than any of the insect damage assessments. Stink bug damage and maize weevil number were more closely associated with aflatoxin level than was corn earworm damage. In addition, the indices of spatial-temporal association (?) demonstrated that the number of maize weevils was associated between the first (4 weeks pre-harvest) and second (1 week pre-harvest) samplings in both years on all fields. In contrast, corn earworm damage between the first and second samplings from the field on the Belflower Farm, and aflatoxin level and corn earworm damage from the field on the Lang Farm were dissociated in 2009. PMID:23956115

  13. Influence of throughfall spatial and temporal patterns on soil moisture variability under Downy oak and Scots pine stands in Mediterranean conditions

    NASA Astrophysics Data System (ADS)

    Llorens, Pilar; Garcia-Estringana, Pablo; Cayuela, Carles; Latron, Jérôme; Molina, Antonio; Gallart, Francesc

    2015-04-01

    Temporal and spatial variability of throughfall and stemflow patterns, due to differences in forest structure and seasonality of Mediterranean climate, may lead to significant changes in the volume of water that locally reaches the soil, with a potential effect on groundwater recharge and on hydrological response of forested hillslopes. Two forest stands in Mediterranean climatic conditions were studied to explore the role of vegetation on the temporal and spatial redistribution of rainfall. One is a Downy oak forest (Quercus pubescens) and the other is a Scots pine forest (Pinus sylvestris), both located in the Vallcebre research catchments (NE Spain, 42° 12'N, 1° 49'E). These plots are representative of Mediterranean mountain areas with spontaneous afforestation by Scots pine as a consequence of the abandonment of agricultural terraces, formerly covered by Downy oaks. The monitoring design of each plot consists of 20 automatic rain recorders to measuring throughfall, 7 stemflow rings connected to tipping-buckets and 40 automatic soil moisture probes. All data were recorded each 5 min. Bulk rainfall and meteorological conditions above both forest covers were also recorded, and canopy cover and biometric characteristics of the plots were measured. Results indicate a marked temporal stability of throughfall in both stands, and a lower persistence of spatial patterns in the leafless period than in the leafed one in the oaks stand. Moreover, in the oaks plot the ranks of gauges in the leafed and leafless periods were not significantly correlated, indicating different wet and dry hotspots in each season. The spatial distribution of throughfall varied significantly depending on rainfall volume, with small events having larger variability, whereas large events tended to homogenize the relative differences in point throughfall. Soil water content spatial variability increased with increasing soil water content, but direct dependence of soil water content variability on throughfall patterns is difficult to establish.

  14. Time-warp invariant pattern detection with bursting neurons

    NASA Astrophysics Data System (ADS)

    Gollisch, Tim

    2008-01-01

    Sound patterns are defined by the temporal relations of their constituents, individual acoustic cues. Auditory systems need to extract these temporal relations to detect or classify sounds. In various cases, ranging from human speech to communication signals of grasshoppers, this pattern detection has been found to display invariance to temporal stretching or compression of the sound signal ('linear time-warp invariance'). In this work, a four-neuron network model is introduced, designed to solve such a detection task for the example of grasshopper courtship songs. As an essential ingredient, the network contains neurons with intrinsic bursting dynamics, which allow them to encode durations between acoustic events in short, rapid sequences of spikes. As shown by analytical calculations and computer simulations, these neuronal dynamics result in a powerful mechanism for temporal integration. Finally, the network reads out the encoded temporal information by detecting equal activity of two such bursting neurons. This leads to the recognition of rhythmic patterns independent of temporal stretching or compression.

  15. A concave-patterned TiN/PECVD-Si3N4?/TiN diaphragm MEMS acoustic sensor based on a polyimide sacrificial layer

    NASA Astrophysics Data System (ADS)

    Lee, Jaewoo; Jeon, J. H.; Je, C. H.; Kim, Y.-G.; Lee, S. Q.; Yang, W. S.; Lee, J. S.; Lee, S.-G.

    2015-12-01

    In this paper, we present a concave-patterned TiN/PECVD-Si3N4?/TiN diaphragm micro-electro-mechanical system (MEMS) acoustic sensor based on a polyimide sacrificial layer. The use of the spin-coated polyimide eliminates the additional Al pad process of conventional device fabrication due to simple O2 ashing to release the sacrificial layer, simplifying the photolithography process. Also, to adjust the acoustic sensor for a bottom-ported package, its diaphragm was implemented to be placed over the back-plate. The TiN/PECVD-Si3N4/TiN multi-layer diaphragm was formed with the stress controllability of PECVD-Si3N4 from???162?MPa to??+109?MPa. Furthermore, a parallel-plate capacitance model on the basis of an approximately linearized electric field method (ALEM) is proposed to evaluate the capacitance of two plates. The modelled capacitance showed less than 3.7% error in FEM simulation, demonstrating the validity of the proposed model. At a zero-bias voltage, the effective intrinsic and parasitic capacitances in the active area were 1.656 pF and 0.388 pF, respectively. Moreover, with a pull-in analytical model by using ALEM, the effective tensile stress for the diaphragm was extracted to??+31.5?MPa, where the pull-in voltage was 10.7?V. In succession, the dynamic response for the open-circuit sensitivity was modelled with an equivalent circuit model based on lumped parameters. The measured open-circuit sensitivity of???45.1 dBV Pa?1 at 1?kHz with a bias of 9.6?V was only slightly different from the modelled sensitivity of???45.0 dBV Pa?1. Thus, these results demonstrate that the proposed sensor is suitable for a front-end voice capture module.

  16. PRIMATES,39(4): 505--518, October 1998 505 Buttress Drumming by Wild Chimpanzees: Temporal Patterning,

    E-print Network

    PRIMATES,39(4): 505--518, October 1998 505 Buttress Drumming by Wild Chimpanzees: Temporal ABSTRACT. Wild chimpanzees (Pan troglodytes) generate low-frequency sounds that are audible to humans from," the species-specific long-distance vocalization. Individual differences in male chimpanzee (Pt. verus

  17. Spatial and temporal patterns of polycyclic aromatic hydrocarbons (PAHs) in eggs of a coastal bird from northwestern Iberia after a major oil spill.

    PubMed

    Vidal, María; Domínguez, Jesús; Luís, Antonio

    2011-06-01

    This study investigated the spatial and temporal patterns of polycyclic aromatic hydrocarbons (PAHs) in kentish plover (Charadrius alexandrinus) eggs after a major oil spill (Prestige, November 2002) in northwest Iberia. We analysed a total of 77 eggs from 10 breeding localities of the Iberian Atlantic coast, 9 located along the Galician coast (NW Spain) and one in the Ria de Aveiro (Portugal). General linear mixed models did not show a significant effect of the area on the total PAH levels and on each compound, probably due to the spread of pollution caused by the Prestige ship and the industrial and harbour pollutions of the Ria de Aveiro (Portugal). In contrast, the PAH levels were significantly affected by year. The PAH levels decreased from 2004 to 2006 but strongly increase and showed a different pattern of PAH accumulation in 2007. These results may be due to tetra- and pentacyclic compounds from forest fires that occurred during summer 2006. PMID:21482431

  18. Innovative sensing techniques and data analysis for characterizing the spatial and temporal dynamics of soil moisture patterns at the hillslope scale

    NASA Astrophysics Data System (ADS)

    Martini, Edoardo; Wollschläger, Ute; Kögler, Simon; Behrens, Thorsten; Dietrich, Peter; Reinstorf, Frido; Schmidt, Karsten; Weiler, Markus; Werban, Ulrike; Zacharias, Steffen

    2015-04-01

    Soil moisture plays a critical role in every hydrological or meteorological model; nevertheless, it is still a great challenge to provide adequate information on soil moisture distribution beyond the point scale. Mobile geophysical methods such as electromagnetic induction (EMI) have been widely used for mapping soil water content at the field scale with high spatial resolution. Recent advances in wireless sensor technology allow monitoring of soil moisture dynamics with high temporal resolution at varying scales. The objective of this study was to characterize the spatio-temporal pattern of soil moisture at the hillslope scale and infer the controlling hydrological processes, integrating well established and innovative sensing techniques, as well as new statistical methods. We combined soil hydrological and pedological expertise with geophysical measurements and methods from digital soil mapping for designing the monitoring setup of a wireless sensor network for a grassland hillslope in the Schäfertal catchment, Central Germany. At the same site, we measured soil apparent electrical conductivity (ECa) using EMI devices. Hypothesizing a wet and a dry soil moisture state to be characteristic of the spatial pattern of soil moisture, we tested a new method of analysis based on the Spearman rank correlation coefficient for describing the spatial and temporal evolution of such patterns. Based on this approach, we described the persistence and switching mechanisms of the two characteristic states, inferring the local properties that control the observed spatial patterns and the hydrological processes driving the transitions. The method showed to provide valuable insight into the persistence of characteristic states of soil moisture and the mechanisms of transition, and to be suitable for highlighting events for which specific hydrological processes occurred. The spatial organization of soil moisture was observed to be controlled by different processes in different soil horizons, with time-varying contribution, and the topsoil's moisture does not mirror processes that take place within the soil profile. The EMI investigation at the Schäfertal site appears to be suitable for mapping soil moisture at times when local soil properties control the spatial distribution of soil moisture, but not when topography has a major control on such pattern. The results will help to improve conceptual understanding for hydrological model studies at similar or smaller scales, and to transfer observation concepts and process understanding to larger or less instrumented areas.

  19. Study of acoustic correlates associate with emotional speech

    NASA Astrophysics Data System (ADS)

    Yildirim, Serdar; Lee, Sungbok; Lee, Chul Min; Bulut, Murtaza; Busso, Carlos; Kazemzadeh, Ebrahim; Narayanan, Shrikanth

    2004-10-01

    This study investigates the acoustic characteristics of four different emotions expressed in speech. The aim is to obtain detailed acoustic knowledge on how a speech signal is modulated by changes from neutral to a certain emotional state. Such knowledge is necessary for automatic emotion recognition and classification and emotional speech synthesis. Speech data obtained from two semi-professional actresses are analyzed and compared. Each subject produces 211 sentences with four different emotions; neutral, sad, angry, happy. We analyze changes in temporal and acoustic parameters such as magnitude and variability of segmental duration, fundamental frequency and the first three formant frequencies as a function of emotion. Acoustic differences among the emotions are also explored with mutual information computation, multidimensional scaling and acoustic likelihood comparison with normal speech. Results indicate that speech associated with anger and happiness is characterized by longer duration, shorter interword silence, higher pitch and rms energy with wider ranges. Sadness is distinguished from other emotions by lower rms energy and longer interword silence. Interestingly, the difference in formant pattern between [happiness/anger] and [neutral/sadness] are better reflected in back vowels such as /a/(/father/) than in front vowels. Detailed results on intra- and interspeaker variability will be reported.

  20. Temporal Pattern of Online Communication Spike Trains in Spreading a Scientific Rumor: How Often, Who Interacts with Whom?

    NASA Astrophysics Data System (ADS)

    Sanli, Ceyda; Lambiotte, Renaud

    2015-09-01

    We study complex time series (spike trains) of online user communication while spreading messages about the discovery of the Higgs boson in Twitter. We focus on online social interactions among users such as retweet, mention, and reply, and construct different types of active (performing an action) and passive (receiving an action) spike trains for each user. The spike trains are analyzed by means of local variation, to quantify the temporal behavior of active and passive users, as a function of their activity and popularity. We show that the active spike trains are bursty, independently of their activation frequency. For passive spike trains, in contrast, the local variation of popular users presents uncorrelated (Poisson random) dynamics. We further characterize the correlations of the local variation in different interactions. We obtain high values of correlation, and thus consistent temporal behavior, between retweets and mentions, but only for popular users, indicating that creating online attention suggests an alignment in the dynamics of the two interactions.

  1. Predictors of temporal patterns of psychiatric distress during 10 years following the nuclear accident at Three Mile Island.

    PubMed

    Dew, M A; Bromet, E J

    1993-04-01

    The present study examines psychiatric symptom levels during a 10-year period in a community sample of mothers of young children. All were identified in the early aftermath of the 1979 Three Mile Island nuclear accident, and followed through the accident's 1989 anniversary. Cluster analysis was used to identify long-term distress profiles during the study period; women's temporal profiles were found to be either (a) stable and at low, clinically nonsignificant levels of distress across all measurement points or (b) at consistently elevated, clinically significant levels that varied with the timing of postaccident events such as the restart of the undamaged reactor and the 10th anniversary. Subsequent multivariate analyses indicated that preaccident characteristics, as well as parameters reflecting respondents' initial involvement with, and reactions to the accident, were important for distinguishing between women within the two temporal profile groups. Implications of the results for both policy formulation and continued research on significant environmental stressors is discussed. PMID:8511662

  2. The Transcriptional Repressor MYB2 Regulates Both Spatial and Temporal Patterns of Proanthocyandin and Anthocyanin Pigmentation in Medicago truncatula[OPEN

    PubMed Central

    2015-01-01

    Accumulation of anthocyanins and proanthocyanidins (PAs) is limited to specific cell types and developmental stages, but little is known about how antagonistically acting transcriptional regulators work together to determine temporal and spatial patterning of pigmentation at the cellular level, especially for PAs. Here, we characterize MYB2, a transcriptional repressor regulating both anthocyanin and PA biosynthesis in the model legume Medicago truncatula. MYB2 was strongly upregulated by MYB5, a major regulator of PA biosynthesis in M. truncatula and a component of MYB-basic helix loop helix-WD40 (MBW) activator complexes. Overexpression of MYB2 abolished anthocyanin and PA accumulation in M. truncatula hairy roots and Arabidopsis thaliana seeds, respectively. Anthocyanin deposition was expanded in myb2 mutant seedlings and flowers accompanied by increased anthocyanin content. PA mainly accumulated in the epidermal layer derived from the outer integument in the M. truncatula seed coat, starting from the hilum area. The area of PA accumulation and ANTHOCYANIDIN REDUCTASE expression was expanded into the seed body at the early stage of seed development in the myb2 mutant. Genetic, biochemical, and cell biological evidence suggests that MYB2 functions as part of a multidimensional regulatory network to define the temporal and spatial pattern of anthocyanin and PA accumulation linked to developmental processes. PMID:26410301

  3. Modeling the influence of hydrological processes on spatial and temporal patterns of CO{sub 2} soil efflux from an arctic tundra catchment

    SciTech Connect

    Ostendorf, B.

    1996-08-01

    Spatial and temporal patterns of CO{sub 2} efflux from arctic tundra soils are examined with three, linked simulation models at a 2.2-km{sup 2} catchment. The model complex runs on a 20*20 m grid and a temporal resolution of 1 h over one growing season. TOPMODEL is used to predict the dynamics of the water balance and spatial pattern of water table. A canopy model (GAS-FLUX) is used to predict moss and vascular plant transpiration rates. Soil respiration is computed form an empirical regression model incorporating the effects of soil temperature and depth to the water table. Soil efflux in the riparian zones of 60 g C m{sup {minus}2} compares to 119 g C m{sup {minus}2} in the hillslopes indicating large spatial differences. An increase of air temperature and solar radiation or a decrease of precipitation increase soil respiration. The results indicate a tight connection between water and carbon cycles at the catchment scale. Keeping all other conditions constant, a seasonal increase of transpiration rates by 10% increases soil respiration by 5% or 4.6 g Cm{sup {minus}2}. Data deficiencies and suggestions for future modeling are discussed. 40 refs., 8 figs.

  4. Assessment of long-range correlation in animal behavior time series: The temporal pattern of locomotor activity of Japanese quail (Coturnix coturnix) and mosquito larva (Culex quinquefasciatus)

    NASA Astrophysics Data System (ADS)

    Kembro, Jackelyn M.; Flesia, Ana Georgina; Gleiser, Raquel M.; Perillo, María A.; Marin, Raul H.

    2013-12-01

    Detrended Fluctuation Analysis (DFA) is a method that has been frequently used to determine the presence of long-range correlations in human and animal behaviors. However, according to previous authors using statistical model systems, in order to correctly use DFA different aspects should be taken into account such as: (1) the establishment by hypothesis testing of the absence of short term correlation, (2) an accurate estimation of a straight line in the log-log plot of the fluctuation function, (3) the elimination of artificial crossovers in the fluctuation function, and (4) the length of the time series. Taking into consideration these factors, herein we evaluated the presence of long-range correlation in the temporal pattern of locomotor activity of Japanese quail (Coturnix coturnix) and mosquito larva (Culex quinquefasciatus). In our study, modeling the data with the general autoregressive integrated moving average (ARFIMA) model, we rejected the hypothesis of short-range correlations (d=0) in all cases. We also observed that DFA was able to distinguish between the artificial crossover observed in the temporal pattern of locomotion of Japanese quail and the crossovers in the correlation behavior observed in mosquito larvae locomotion. Although the test duration can slightly influence the parameter estimation, no qualitative differences were observed between different test durations.

  5. Spatio-temporal patterns and source apportionment of pollution in Qiantang River (China) using neural-based modeling and multivariate statistical techniques

    NASA Astrophysics Data System (ADS)

    Su, Shiliang; Zhi, Junjun; Lou, Liping; Huang, Fang; Chen, Xia; Wu, Jiaping

    Characterizing the spatio-temporal patterns and apportioning the pollution sources of water bodies are important for the management and protection of water resources. The main objective of this study is to describe the dynamics of water quality and provide references for improving river pollution control practices. Comprehensive application of neural-based modeling and different multivariate methods was used to evaluate the spatio-temporal patterns and source apportionment of pollution in Qiantang River, China. Measurement data were obtained and pretreated for 13 variables from 41 monitoring sites for the period of 2001-2004. A self-organizing map classified the 41 monitoring sites into three groups (Group A, B and C), representing different pollution characteristics. Four significant parameters (dissolved oxygen, biochemical oxygen demand, total phosphorus and total lead) were identified by discriminant analysis for distinguishing variations of different years, with about 80% correct assignment for temporal variation. Rotated principal component analysis (PCA) identified four potential pollution sources for Group A (domestic sewage and agricultural pollution, industrial wastewater pollution, mineral weathering, vehicle exhaust and sand mining), five for Group B (heavy metal pollution, agricultural runoff, vehicle exhaust and sand mining, mineral weathering, chemical plants discharge) and another five for Group C (vehicle exhaust and sand mining, chemical plants discharge, soil weathering, biochemical pollution, mineral weathering). The identified potential pollution sources explained 75.6% of the total variances for Group A, 75.0% for Group B and 80.0% for Group C, respectively. Receptor-based source apportionment was applied to further estimate source contributions for each pollution variable in the three groups, which facilitated and supported the PCA results. These results could assist managers to develop optimal strategies and determine priorities for river pollution control and effective water resources management.

  6. Temporal Trends and Pattern Changes of Short- and Medium-Chain Chlorinated Paraffins in Marine Mammals from the South China Sea over the Past Decade.

    PubMed

    Zeng, Lixi; Lam, James C W; Wang, Yawei; Jiang, Guibin; Lam, Paul K S

    2015-10-01

    Temporal trends of short- (SCCPs) and medium-chain chlorinated paraffins (MCCPs) were examined in blubber samples of 50 finless porpoises (Neophocaena phocaenoides) and 25 Indo-Pacific humpback dolphins (Sousa chinensis) collected from the South China Sea between 2004 and 2014. Elevated levels of SCCPs and MCCPs were detected in all blubber samples of both cetacean species. Concentrations of SCCPs ranged from 280 to 3900 ng·g(-1) dry weight (dw) in porpoises and from 430 to 9100 ng·g(-1) dw in dolphins, while concentrations of MCCPs ranged from 320 to 8600 ng·g(-1) dw in porpoises and from 530 to 23?000 ng·g(-1) dw in dolphins. Significantly higher concentrations were present in dolphins than porpoises due to their exposure levels in their living habitats. Strongly linear correlations existed between SCCPs and MCCPs, but there were no significant concentration differences between the genders of the two cetacean species in the same sampling year. Significantly temporal increasing trends of ?SCCPs and ?MCCPs have been observed in both porpoise and dolphin samples over the past decade, which reflect the influence of histories of production and usage on the bioaccumulation of CPs in marine mammals in China. An apparent temporal shift trend from SCCPs to MCCPs was also observed in CP accumulation profiles. Complex environmental fractionation from localized sources in the study region via atmospheric transport, oceanic/offshore water transport, and trophic transfer have resulted in different CP accumulation levels and homologue patterns in the two cetacean species. This is the first report of systematic temporal trends of SCCPs and MCCPs in marine mammals. PMID:26335162

  7. Validation and Simulation of ARES I Scale Model Acoustic Test -1- Pathfinder Development

    NASA Technical Reports Server (NTRS)

    Putnam, G. C.

    2011-01-01

    The Ares I Scale Model Acoustics Test (ASMAT) is a series of live-fire tests of scaled rocket motors meant to simulate the conditions of the Ares I launch configuration. These tests have provided a well documented set of high fidelity measurements useful for validation including data taken over a range of test conditions and containing ph