Protein purification and analysis: next generation Western blotting techniques.

PubMed

Mishra, Manish; Tiwari, Shuchita; Gomes, Aldrin V

2017-11-01

Western blotting is one of the most commonly used techniques in molecular biology and proteomics. Since western blotting is a multistep protocol, variations and errors can occur at any step reducing the reliability and reproducibility of this technique. Recent reports suggest that a few key steps, such as the sample preparation method, the amount and source of primary antibody used, as well as the normalization method utilized, are critical for reproducible western blot results. Areas covered: In this review, improvements in different areas of western blotting, including protein transfer and antibody validation, are summarized. The review discusses the most advanced western blotting techniques available and highlights the relationship between next generation western blotting techniques and its clinical relevance. Expert commentary: Over the last decade significant improvements have been made in creating more sensitive, automated, and advanced techniques by optimizing various aspects of the western blot protocol. New methods such as single cell-resolution western blot, capillary electrophoresis, DigiWest, automated microfluid western blotting and microchip electrophoresis have all been developed to reduce potential problems associated with the western blotting technique. Innovative developments in instrumentation and increased sensitivity for western blots offer novel possibilities for increasing the clinical implications of western blot.

Single cell–resolution western blotting

PubMed Central

Kang, Chi-Chih; Yamauchi, Kevin A; Vlassakis, Julea; Sinkala, Elly; Duncombe, Todd A; Herr, Amy E

2017-01-01

This protocol describes how to perform western blotting on individual cells to measure cell-to-cell variation in protein expression levels and protein state. like conventional western blotting, single-cell western blotting (scWB) is particularly useful for protein targets that lack selective antibodies (e.g., isoforms) and in cases in which background signal from intact cells is confounding. scWB is performed on a microdevice that comprises an array of microwells molded in a thin layer of a polyacrylamide gel (PAG). the gel layer functions as both a molecular sieving matrix during PAGE and a blotting scaffold during immunoprobing. scWB involves five main stages: (i) gravity settling of cells into microwells; (ii) chemical lysis of cells in each microwell; (iii) PAGE of each single-cell lysate; (iv) exposure of the gel to UV light to blot (immobilize) proteins to the gel matrix; and (v) in-gel immunoprobing of immobilized proteins. Multiplexing can be achieved by probing with antibody cocktails and using antibody stripping/reprobing techniques, enabling detection of 10+ proteins in each cell. We also describe microdevice fabrication for both uniform and pore-gradient microgels. to extend in-gel immunoprobing to gels of small pore size, we describe an optional gel de-cross-linking protocol for more effective introduction of antibodies into the gel layer. once the microdevice has been fabricated, the assay can be completed in 4–6 h by microfluidic novices and it generates high-selectivity, multiplexed data from single cells. the technique is relevant when direct measurement of proteins in single cells is needed, with applications spanning the fundamental biosciences to applied biomedicine. PMID:27466711

Profiling EGFR activity in head and neck squamous cell carcinoma by using a novel layered membrane Western blot technology.

PubMed

Patel, Vyomesh; Ramesh, Arun; Traicoff, June L; Baibakov, Galina; Emmert-Buck, Michael R; Gutkind, J Silvio; Knezevic, Vladimir

2005-05-01

Given the role of epidermal growth factor receptor (EGFR) in head and neck squamous cell carcinomas (HNSCC), several rational approaches have now been utilized to abrogate tyrosine kinase activity and its disengagement from downstream signal transducers. Monitoring the activity of these molecules could potentially be useful to determine not only drug efficacy but also to identify HNSCC patients most likely to benefit from this type of therapy. In this study we have used a novel high throughput multi-layered Western blotting (MLWestern) method that allows the detection of multiple proteins from a single experiment in order to characterize key components in the EGFR signaling pathway in HNSCC cells. Total and activated forms of EGFR and the downstream effectors, Erk and Akt were readily detected in HNSCC cells, where in the control cells (HaCaT) these proteins could only be detected in EGF stimulated cells. Results from conventional Western blot and MLWestern were comparable. Clustering analysis of protein expression revealed similarities in cellular response between some of the cell lines indicative of similarities in their biological response. The data indicate that MLWestern can be potentially applied to identify molecular targets that could be used for rational therapeutic intervention strategies.

[Better performance of Western blotting: quick vs slow protein transfer, blotting membranes and the visualization methods].

PubMed

Kong, Ling-Quan; Pu, Ying-Hui; Ma, Shi-Kun

2008-01-01

To study how the choices of the quick vs slow protein transfer, the blotting membranes and the visualization methods influence the performance of Western blotting. The cellular proteins were abstracted from human breast cell line MDA-MB-231 for analysis with Western blotting using quick (2 h) and slow (overnight) protein transfer, different blotting membranes (nitrocellulose, PVDF and nylon membranes) and different visualization methods (ECL and DAB). In Western blotting with slow and quick protein transfer, the prestained marker presented more distinct bands on nitrocellulose membrane than on the nylon and PVDF membranes, and the latter also showed clear bands on the back of the membrane to very likely cause confusion, which did not occur with nitrocellulose membrane. PVDF membrane allowed slightly clearer visualization of the proteins with DAB method as compared with nitrocellulose and nylon membranes, and on the latter two membranes, quick protein transfer was likely to result in somehow irregular bands in comparison with slow protein transfer. With slow protein transfer and chemiluminescence for visualization, all the 3 membranes showed clear background, while with quick protein transfer, nylon membrane gave rise to obvious background noise but the other two membranes did not. Different membranes should be selected for immunoblotting according to the actual needs of the experiment. Slow transfer of the proteins onto the membranes often has better effect than quick transfer, and enhanced chemiluminescence is superior to DAB for protein visualization and allows highly specific and sensitive analysis of the protein expressions.

A brief review of other notable protein blotting methods.

PubMed

Kurien, Biji T; Scofield, R Hal

2009-01-01

A plethora of methods have been used for transferring proteins from the gel to the membrane. These include centrifuge blotting, electroblotting of proteins to Teflon tape and membranes for N- and C-terminal sequence analysis, multiple tissue blotting, a two-step transfer of low and high molecular weight proteins, blotting of Coomassie Brilliant Blue (CBB)-stained proteins from polyacrylamide gels to transparencies, acid electroblotting onto activated glass, membrane-array method for the detection of human intestinal bacteria in fecal samples, protein microarray using a new black cellulose nitrate support, electrotransfer using square wave alternating voltage for enhanced protein recovery, polyethylene glycol-mediated significant enhancement of the immunoblotting transfer, parallel protein chemical processing before and during western blot and the molecular scanner concept, electronic western blot of matrix-assisted laser desorption/ionization (MALDI) mass spectrometry-identified polypeptides from parallel processed gel-separated proteins, semidry electroblotting of peptides and proteins from acid-urea polyacrylamide gels, transfer of silver-stained proteins from polyacrylamide gels to polyvinylidene difluoride (PVDF) membranes, and the display of K(+) channel proteins on a solid nitrocellulose support for assaying toxin binding. The quantification of proteins bound to PVDF membranes by elution of CBB, clarification of immunoblots on PVDF for transmission densitometry, gold coating of nonconductive membranes before MALDI tandem mass spectrometric analysis to prevent charging effect for analysis of peptides from PVDF membranes, and a simple method for coating native polysaccharides onto nitrocellulose are some of the methods involving either the manipulation of membranes with transferred proteins or just a passive transfer of antigens to membranes. All these methods are briefly reviewed in this chapter.

Clinical application of a rapid method using agarose gel electrophoresis and Western blotting to evaluate von Willebrand factor protease activity.

PubMed

Kirzek, D M; Rick, M E

2001-03-01

A method for evaluating the activity of the von Willebrand factor (vWF) protease is described, and a clinical application is illustrated. The procedure utilizes gel electrophoresis, Western blotting, and luminographic detection methods to evaluate the distribution of vWF multimers before and after incubation of clinical samples under conditions that favor proteolysis by this enzyme. Physiologically, the high-molecular-weight multimers of vWF are cleaved by the vWF protease under conditions of high shear stress in parts of the arterial circulation; cleavage of vWF multimers is also observed after exposure of vWF to denaturing agents in vitro and thus can serve as a laboratory test for the activity of the protease. vWF protease activity is decreased or absent in patients with thrombotic thrombocytopenic purpura due to an inhibiting autoantibody, and this leads to high levels of noncleaved vWF and to life-threatening thrombosis, thrombocytopenia and anemia. The assay evaluates the activity of the protease by assessing the cleavage of vWF multimers after patient plasmas are incubated in vitro under denaturing conditions. With the use of these electrophoresis and Western blotting techniques, patient plasmas can be rapidly assessed for the activity of the vWF protease which may aid in the treatment strategy for these patients.

The Design of a Quantitative Western Blot Experiment

PubMed Central

Taylor, Sean C.; Posch, Anton

2014-01-01

Western blotting is a technique that has been in practice for more than three decades that began as a means of detecting a protein target in a complex sample. Although there have been significant advances in both the imaging and reagent technologies to improve sensitivity, dynamic range of detection, and the applicability of multiplexed target detection, the basic technique has remained essentially unchanged. In the past, western blotting was used simply to detect a specific target protein in a complex mixture, but now journal editors and reviewers are requesting the quantitative interpretation of western blot data in terms of fold changes in protein expression between samples. The calculations are based on the differential densitometry of the associated chemiluminescent and/or fluorescent signals from the blots and this now requires a fundamental shift in the experimental methodology, acquisition, and interpretation of the data. We have recently published an updated approach to produce quantitative densitometric data from western blots (Taylor et al., 2013) and here we summarize the complete western blot workflow with a focus on sample preparation and data analysis for quantitative western blotting. PMID:24738055

Western Blotting of the Endocannabinoid System.

PubMed

Wager-Miller, Jim; Mackie, Ken

2016-01-01

Measuring expression levels of G protein-coupled receptors (GPCRs) is an important step for understanding the distribution, function, and regulation of these receptors. A common approach for detecting proteins from complex biological systems is Western blotting. In this chapter, we describe a general approach to Western blotting protein components of the endocannabinoid system using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and nitrocellulose membranes, with a focus on detecting type 1 cannabinoid (CB1) receptors. When this technique is carefully used, specifically with validation of the primary antibodies, it can provide quantitative information on protein expression levels. Additional information can also be inferred from Western blotting such as potential posttranslational modifications that can be further evaluated by specific analytical techniques.

The Dot Blot ELISA.

ERIC Educational Resources Information Center

Gerbig, Donald G., Jr.; Fenk, Christopher J.; Goodhart, Amy S.

2000-01-01

Uses two laboratory techniques, Enzyme Linked Immunosorbent Assay (ELISA) and Western Blot, to demonstrate antibody-antigen binding concepts. Includes a list of required materials and directions for the procedure, and makes suggestions for classroom applications. (Contains 13 references.) (YDS)

Lipid-binding analysis using a fat blot assay.

PubMed

Munnik, Teun; Wierzchowiecka, Magdalena

2013-01-01

Protein-lipid interactions play an important role in lipid metabolism, membrane trafficking and cell -signaling by regulating protein localization, activation, and function. The Fat Blot assay is a relatively simple and inexpensive method to examine these interactions using nitrocellulose membrane-immobilized lipids. The assay is adapted from the method by Dowler et al. (Sci STKE 129:pl6, 2002) and provides qualitative and quantitative information on the relative affinity with which a protein binds to a particular lipid. To perform a Fat Blot assay, serial dilutions of different phospholipids are spotted onto a nitrocellulose membrane. These membranes are then incubated with a lipid-binding protein possessing a GST (or other epitope) tag. The membranes are washed and the protein, which is bound to the membrane by virtue of its interaction with the lipid's head group, is detected by immunoblotting with an antibody against GST (or other epitope). The procedure only requires a few micrograms of protein and is quick, simple and cheap to perform.

Multiplexed Western Blotting Using Microchip Electrophoresis.

PubMed

Jin, Shi; Furtaw, Michael D; Chen, Huaxian; Lamb, Don T; Ferguson, Stephen A; Arvin, Natalie E; Dawod, Mohamed; Kennedy, Robert T

2016-07-05

Western blotting is a commonly used protein assay that combines the selectivity of electrophoretic separation and immunoassay. The technique is limited by long time, manual operation with mediocre reproducibility, and large sample consumption, typically 10-20 μg per assay. Western blots are also usually used to measure only one protein per assay with an additional housekeeping protein for normalization. Measurement of multiple proteins is possible; however, it requires stripping membranes of antibody and then reprobing with a second antibody. Miniaturized alternatives to Western blot based on microfluidic or capillary electrophoresis have been developed that enable higher-throughput, automation, and greater mass sensitivity. In one approach, proteins are separated by electrophoresis on a microchip that is dragged along a polyvinylidene fluoride membrane so that as proteins exit the chip they are captured on the membrane for immunoassay. In this work, we improve this method to allow multiplexed protein detection. Multiple injections made from the same sample can be deposited in separate tracks so that each is probed with a different antibody. To further enhance multiplexing capability, the electrophoresis channel dimensions were optimized for resolution while keeping separation and blotting times to less than 8 min. Using a 15 μm deep × 50 μm wide × 8.6 cm long channel, it is possible to achieve baseline resolution of proteins that differ by 5% in molecular weight, e.g., ERK1 (44 kDa) from ERK2 (42 kDa). This resolution allows similar proteins detected by cross-reactive antibodies in a single track. We demonstrate detection of 11 proteins from 9 injections from a single Jurkat cell lysate sample consisting of 400 ng of total protein using this procedure. Thus, multiplexed Western blots are possible without cumbersome stripping and reprobing steps.

A Comparison of Antibacterial Activity of Selected Thyme (Thymus) Species by Means of the Dot Blot Test with Direct Bioautographic Detection.

PubMed

Orłowska, Marta; Kowalska, Teresa; Sajewicz, Mieczysław; Jesionek, Wioleta; Choma, Irena M; Majer-Dziedzic, Barbara; Szymczak, Grażyna; Waksmundzka-Hajnos, Monika

2015-01-01

Bioautography carried out with the aid of thin-layer chromatographic adsorbents can be used to assess antibacterial activity in samples of different origin. It can either be used as a simple and cost-effective detection method applied to a developed chromatogram, or to the dot blot test performed on a chromatographic plate, where total antibacterial activity of a sample is scrutinized. It was an aim of this study to compare antibacterial activity of 18 thyme (Thymus) specimens and species (originating from the same gardening plot and harvested in the same period of time) by means of a dot blot test with direct bioautography. A two-step extraction of herbal material was applied, and at step two the polar fraction of secondary metabolites was obtained under the earlier optimized extraction conditions [methanol-water (27+73, v/v), 130°C]. This fraction was then tested for its antibacterial activity against Bacillus subtilis bacteria. It was established that all investigated extracts exhibited antibacterial activity, yet distinct differences were perceived in the size of the bacterial growth inhibition zones among the compared thyme species. Based on the results obtained, T. citriodorus "golden dwarf" (sample No. 5) and T. marschallianus (sample No. 6) were selected as promising targets for further investigations and possible inclusion in a herbal pharmacopeia, which is an essential scientific novelty of this study.

Serological investigation of enterococcal infections using western blot.

PubMed

Sulaiman, A; Rakita, R M; Arduino, R C; Patterson, J E; Steckelberg, J M; Singh, K V; Murray, B E

1996-10-01

To assess the usefulness of Western blot in the diagnosis of enterococcal infections, a pilot study was conducted with a newly developed Western blot using sera from patients with confirmed enterococcal infections. Sera from 17 of 19 patients with enterococcal endocarditis reacted strongly to enterococcal antigens on the Western blot, and most produced specific bands at molecular weights 98 kDa and 54 kDa. Sera from patients with bacteremic cholangitis and pyelonephritis reacted frequently as well, but the pattern of bands was different from that observed with endocarditis. Eighty-five percent of 26 sera tested from patients with bacteremia and associated deep-seated infections (endocarditis, cholangitis, and pyelonephritis) were positive on Western blot, compared to 30% of sera from bacteremic patients with no clinically determined deep focus of infection (p < 0.001).

Multistrip western blotting to increase quantitative data output.

PubMed

Kiyatkin, Anatoly; Aksamitiene, Edita

2009-01-01

The qualitative and quantitative measurements of protein abundance and modification states are essential in understanding their functions in diverse cellular processes. Typical western blotting, though sensitive, is prone to produce substantial errors and is not readily adapted to high-throughput technologies. Multistrip western blotting is a modified immunoblotting procedure based on simultaneous electrophoretic transfer of proteins from multiple strips of polyacrylamide gels to a single membrane sheet. In comparison with the conventional technique, Multistrip western blotting increases the data output per single blotting cycle up to tenfold, allows concurrent monitoring of up to nine different proteins from the same loading of the sample, and substantially improves the data accuracy by reducing immunoblotting-derived signal errors. This approach enables statistically reliable comparison of different or repeated sets of data, and therefore is beneficial to apply in biomedical diagnostics, systems biology, and cell signaling research.

Measurement of hygromycin B phosphotransferase activity in crude mammalian cell extracts by a simple dot-blot assay.

PubMed

Sørensen, M S; Duch, M; Paludan, K; Jørgensen, P; Pedersen, F S

1992-03-15

Hygromycin B (Hy) resistance, encoded by the prokaryotic gene hph, is commonly used as a dominant selectable marker for gene transfer experiments in mammalian cells. We describe a simple, quantitative dot-blot assay for measuring the activity in crude mammalian cell extracts of Hy phosphotransferase, the product of the hph gene. The assay shows no cross interference with substrates for neomycin phosphotransferase II, the product of the commonly used marker gene neo; hph and neo may thus be useful as a set of two non-interfering selectable marker and reporter genes for gene transfer experiments in mammalian cells.

Atlantic SSTs control regime shifts in forest fire activity of Northern Scandinavia

PubMed Central

Drobyshev, Igor; Bergeron, Yves; Vernal, Anne de; Moberg, Anders; Ali, Adam A.; Niklasson, Mats

2016-01-01

Understanding the drivers of the boreal forest fire activity is challenging due to the complexity of the interactions driving fire regimes. We analyzed drivers of forest fire activity in Northern Scandinavia (above 60 N) by combining modern and proxy data over the Holocene. The results suggest that the cold climate in northern Scandinavia was generally characterized by dry conditions favourable to periods of regionally increased fire activity. We propose that the cold conditions over the northern North Atlantic, associated with low SSTs, expansion of sea ice cover, and the southward shift in the position of the subpolar gyre, redirect southward the precipitation over Scandinavia, associated with the westerlies. This dynamics strengthens high pressure systems over Scandinavia and results in increased regional fire activity. Our study reveals a previously undocumented teleconnection between large scale climate and ocean dynamics over the North Atlantic and regional boreal forest fire activity in Northern Scandinavia. Consistency of the pattern observed annually through millennium scales suggests that a strong link between Atlantic SST and fire activity on multiple temporal scales over the entire Holocene is relevant for understanding future fire activity across the European boreal zone. PMID:26940995

Atlantic SSTs control regime shifts in forest fire activity of Northern Scandinavia

NASA Astrophysics Data System (ADS)

Drobyshev, Igor; Bergeron, Yves; Vernal, Anne De; Moberg, Anders; Ali, Adam A.; Niklasson, Mats

2016-03-01

Understanding the drivers of the boreal forest fire activity is challenging due to the complexity of the interactions driving fire regimes. We analyzed drivers of forest fire activity in Northern Scandinavia (above 60 N) by combining modern and proxy data over the Holocene. The results suggest that the cold climate in northern Scandinavia was generally characterized by dry conditions favourable to periods of regionally increased fire activity. We propose that the cold conditions over the northern North Atlantic, associated with low SSTs, expansion of sea ice cover, and the southward shift in the position of the subpolar gyre, redirect southward the precipitation over Scandinavia, associated with the westerlies. This dynamics strengthens high pressure systems over Scandinavia and results in increased regional fire activity. Our study reveals a previously undocumented teleconnection between large scale climate and ocean dynamics over the North Atlantic and regional boreal forest fire activity in Northern Scandinavia. Consistency of the pattern observed annually through millennium scales suggests that a strong link between Atlantic SST and fire activity on multiple temporal scales over the entire Holocene is relevant for understanding future fire activity across the European boreal zone.

Atlantic SSTs control regime shifts in forest fire activity of Northern Scandinavia.

PubMed

Drobyshev, Igor; Bergeron, Yves; Vernal, Anne de; Moberg, Anders; Ali, Adam A; Niklasson, Mats

2016-03-04

Understanding the drivers of the boreal forest fire activity is challenging due to the complexity of the interactions driving fire regimes. We analyzed drivers of forest fire activity in Northern Scandinavia (above 60 N) by combining modern and proxy data over the Holocene. The results suggest that the cold climate in northern Scandinavia was generally characterized by dry conditions favourable to periods of regionally increased fire activity. We propose that the cold conditions over the northern North Atlantic, associated with low SSTs, expansion of sea ice cover, and the southward shift in the position of the subpolar gyre, redirect southward the precipitation over Scandinavia, associated with the westerlies. This dynamics strengthens high pressure systems over Scandinavia and results in increased regional fire activity. Our study reveals a previously undocumented teleconnection between large scale climate and ocean dynamics over the North Atlantic and regional boreal forest fire activity in Northern Scandinavia. Consistency of the pattern observed annually through millennium scales suggests that a strong link between Atlantic SST and fire activity on multiple temporal scales over the entire Holocene is relevant for understanding future fire activity across the European boreal zone.

In vitro detection of canine distemper virus nucleic acid with a virus-specific cDNA probe by dot-blot and in situ hybridization.

PubMed

Oglesbee, M; Jackwood, D; Perrine, K; Axthelm, M; Krakowka, S; Rice, J

1986-11-01

A cDNA library was prepared from canine distemper viral (CDV) messenger RNA (mRNA) derived from Vero cells lytically infected with the Onderstepoort strain (Ond) of CDV. A 300 base pair insert was identified which, by Northern blot analysis and Sanger sequence data, was shown to be specific to the nucleocapsid gene. The nucleocapsid (NC) clone was radiolabelled with 32P using nick translation and used to detect viral RNA in both dot-blot and in situ preparations of Vero cells lytically infected with Onderstepoort CDV (Ond-CDV) and immortalized mink lung cells persistently infected with racoon origin CDV (CCL64-RCDV). Dot-blot hybridization results paralleled immunofluorescent results in the lytically infected cells. In 18 persistently infected cell lines from the RCDV-CCL64 parental stock, 13 lines were positive and two were negative on both immunofluorescence and dot-blot hybridization analysis for CDV antigen and RNA, respectively. Viral nucleic acid was detected in these persistently infected cells, where as few as 1.9% of the members of a line were positive on immunofluorescence. A dot-blot autoradiographic signal was obtained in three lines which were negative for CDV antigen. CDV RNA was detected in both lytically and persistently infected cell lines by in situ hybridization, where decreasing probe length was important in increasing the sensitivity of this assay. Viral RNA was detected in over 90% of the lytically infected cells, where only 70% were positive for viral antigen by immunofluorescence.

Western blotting using chemiluminescent substrates.

PubMed

Alegria-Schaffer, Alice

2014-01-01

Western blotting is a powerful and commonly used tool to identify and quantify a specific protein in a complex mixture (Towbin et al., 1979). The technique enables indirect detection of protein samples immobilized on a nitrocellulose or polyvinylidene fluoride (PVDF) membrane. Copyright © 2014 Elsevier Inc. All rights reserved.

Western Blot of Stained Proteins from Dried Polyacrylamide Gels

NASA Technical Reports Server (NTRS)

Gruber, Claudia; Stan-Lotter, Helga

1996-01-01

Western blotting of proteins is customarily performed following their separation on polyacrylamide gels, either prior to staining (1) or, as recently reported, following staining (2). We describe here Western blotting with stained gels, which had been dried and some of which had been stored for years. This procedure permits immunological analysis of proteins, to which antisera may have become available only later, or where the application of newly developed sensitive detection methods is desired. Once rehydration of the gels is achieved, proteins can be-transferred to blotting membranes by any appropriate protocol. Proteins stained with Coomassie Blue have to be detected with a non-chromogenic method, such as the film-based enhanced chemiluminescence (ECL)2) procedure (3). Silver stained proteins, which transfer in the colorless form, may be visualized by any detection method, although, because of the usually very low amounts of proteins, detection by ECL is preferable. Blotting of stained proteins from rehydrated gels is as rapid and as quantitative as from freshly prepared gels, in contrast to blotting from wet stained gels, which requires extensive washing and results in low transfer efficiency (2). Together with a photographic record of the gel pattern, unambiguous identification of immunoreactive proteins from complex mixtures is possible. Some further applications of this work are discussed.

Post-staining electroblotting for efficient and reliable peptide blotting.

PubMed

Lee, Der-Yen; Chang, Geen-Dong

2015-01-01

Post-staining electroblotting has been previously described to transfer Coomassie blue-stained proteins from polyacrylamide gel onto polyvinylidene difluoride (PVDF) membranes. Actually, stained peptides can also be efficiently and reliably transferred. Because of selective staining procedures for peptides and increased retention of stained peptides on the membrane, even peptides with molecular masses less than 2 kDa such as bacitracin and granuliberin R are transferred with satisfactory results. For comparison, post-staining electroblotting is about 16-fold more sensitive than the conventional electroblotting for visualization of insulin on the membrane. Therefore, the peptide blots become practicable and more accessible to further applications, e.g., blot overlay detection or immunoblotting analysis. In addition, the efficiency of peptide transfer is favorable for N-terminal sequence analysis. With this method, peptide blotting can be normalized for further analysis such as blot overlay assay, immunoblotting, and N-terminal sequencing for identification of peptide in crude or partially purified samples.

Illuminating Northern California’s Active Faults

USGS Publications Warehouse

Prentice, Carol S.; Crosby, Christopher J.; Whitehill, Caroline S.; Arrowsmith, J. Ramon; Furlong, Kevin P.; Philips, David A.

2009-01-01

Newly acquired light detection and ranging (lidar) topographic data provide a powerful community resource for the study of landforms associated with the plate boundary faults of northern California (Figure 1). In the spring of 2007, GeoEarthScope, a component of the EarthScope Facility construction project funded by the U.S. National Science Foundation, acquired approximately 2000 square kilometers of airborne lidar topographic data along major active fault zones of northern California. These data are now freely available in point cloud (x, y, z coordinate data for every laser return), digital elevation model (DEM), and KMZ (zipped Keyhole Markup Language, for use in Google EarthTM and other similar software) formats through the GEON OpenTopography Portal (http://www.OpenTopography.org/data). Importantly, vegetation can be digitally removed from lidar data, producing high-resolution images (0.5- or 1.0-meter DEMs) of the ground surface beneath forested regions that reveal landforms typically obscured by vegetation canopy (Figure 2)

Automated design of genomic Southern blot probes

PubMed Central

2010-01-01

Background Sothern blotting is a DNA analysis technique that has found widespread application in molecular biology. It has been used for gene discovery and mapping and has diagnostic and forensic applications, including mutation detection in patient samples and DNA fingerprinting in criminal investigations. Southern blotting has been employed as the definitive method for detecting transgene integration, and successful homologous recombination in gene targeting experiments. The technique employs a labeled DNA probe to detect a specific DNA sequence in a complex DNA sample that has been separated by restriction-digest and gel electrophoresis. Critically for the technique to succeed the probe must be unique to the target locus so as not to cross-hybridize to other endogenous DNA within the sample. Investigators routinely employ a manual approach to probe design. A genome browser is used to extract DNA sequence from the locus of interest, which is searched against the target genome using a BLAST-like tool. Ideally a single perfect match is obtained to the target, with little cross-reactivity caused by homologous DNA sequence present in the genome and/or repetitive and low-complexity elements in the candidate probe. This is a labor intensive process often requiring several attempts to find a suitable probe for laboratory testing. Results We have written an informatic pipeline to automatically design genomic Sothern blot probes that specifically attempts to optimize the resultant probe, employing a brute-force strategy of generating many candidate probes of acceptable length in the user-specified design window, searching all against the target genome, then scoring and ranking the candidates by uniqueness and repetitive DNA element content. Using these in silico measures we can automatically design probes that we predict to perform as well, or better, than our previous manual designs, while considerably reducing design time. We went on to experimentally validate a number

Genetic relatedness of orbiviruses by RNA-RNA blot hybridization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bodkin, D.K.

1985-01-01

RNA-RNA blot hybridization was developed in order to identify type-specific genes among double-stranded (ds) RNA viruses, to assess the genetic relatedness of dsRNA viruses and to classify new strains. Viral dsRNA segments were electrophoresed through 10% polyacrylamide gels, transferred to membranes, and hybridized to (5'/sup 32/P)-pCp labeled genomic RNA from a related strain. Hybridization was performed at 52/sup 0/C, 50% formamide, 5X SSC. Under these conditions heterologous RNA species must share greater than or equal to 74% sequence homology in order to form stable dsRNA hybrids. Cognate genes of nine members of the Palyam serogroup of orbiviruses were identified andmore » their sequence relatedness to the prototype. Palyam virus, was determined. Reciprocal blot hybridizations were performed using radiolabeled genomic RNA of all members of the Palyam serogroup. Unique and variant genes were identified by lack of cross-homology or by weak homology between segments. Since genes 2 and 6 exhibited the highest degree of sequence variability, response to the vertebrate immune system may be a major cause of sequence divergence among members of a single serogroup. Changuinola serogroup isolates were compared by dot-blot hybridization, while Colorado tick fever (CTF) serogroup isolates were compared by the RNA-RNA blot hybridization procedure described for reovirus and Palyam serogroup isolates. Preliminary blot hybridization data were also obtained on the relatedness of members of different Orbivirus serogroups.« less

Skin blotting: a noninvasive technique for evaluating physiological skin status.

PubMed

Minematsu, Takeo; Horii, Motoko; Oe, Makoto; Sugama, Junko; Mugita, Yuko; Huang, Lijuan; Nakagami, Gojiro; Sanada, Hiromi

2014-06-01

The skin performs important structural and physiological functions, and skin assessment represents an important step in identifying skin problems. Although noninvasive techniques for assessing skin status exist, no such techniques for monitoring its physiological status are available. This study aimed to develop a novel skin-assessment technique known as skin blotting, based on the leakage of secreted proteins from inside the skin following overhydration in mice. The applicability of this technique was further investigated in a clinical setting. Skin blotting involves 2 steps: collecting proteins by attaching a damp nitrocellulose membrane to the surface of the skin, and immunostaining the collected proteins. The authors implanted fluorescein-conjugated dextran (F-DEX)-containing agarose gels into mice and detected the tissue distribution of F-DEX under different blotting conditions. They also analyzed the correlations between inflammatory cytokine secretion and leakage following ultraviolet irradiation in mice and in relation to body mass index in humans. The F-DEX in mice was distributed in the deeper and shallower layers of skin and leaked through the transfollicular and transepidermal routes, respectively. Ultraviolet irradiation induced tumor necrosis factor secretion in the epidermis in mice, which was detected by skin blotting, whereas follicular tumor necrosis factor was associated with body mass index in obese human subjects. These results support the applicability of skin blotting for skin assessment. Skin blotting represents a noninvasive technique for assessing skin physiology and has potential as a predictive and diagnostic tool for skin disorders.

Human thyrotropin receptor subunits characterized by thyrotropin affinity purification and western blotting.

PubMed

Leedman, P J; Newman, J D; Harrison, L C

1989-07-01

We studied the subunit structure of the human TSH receptor in thyroid tissue from patients with Graves' disease and multinodular goiter by TSH affinity chromatography, immunoprecipitation with Graves' immunoglobulins (Igs), and a modified technique of Western blotting. Human TSH receptor-binding activity was purified about 1,270-fold by sequential affinity chromatography on wheat germ lectin-agarose and TSH-agarose. Analysis by sodium dodecyl sulfate-polyacrylamide gel electrophoresis of nonreduced affinity-purified receptors eluted in sodium dodecyl sulfate sample buffer revealed three noncovalently linked subunits of 70,000, 50,000, and 35,000 mol wt. When reduced, a major subunit of 25,000 mol wt was identified. When 3 mol/L NaCl was used to elute affinity-purified receptors only the 50,000 mol wt nonreduced subunit was detected. This subunit bound [125I]bovine TSH and was precipitated by Graves' Igs. Modifications to the conventional Western blotting technique enabled thyroglobulin components (approximately 220,000 mol wt), thyroid microsomal antigen (a doublet of approximately 110,000 mol wt), and putative TSH receptor subunits of 70,000 and 50,000 mol wt to be identified in thyroid particulate membranes by Graves' Igs. Blotting of affinity-purified receptors eluted in sodium dodecyl sulfate sample buffer revealed subunits of either 70,000 or 50,000 mol wt, with a minority of Graves' serum samples. We conclude that the nonreduced human TSH receptor is an oligomeric complex comprising three different subunits of 70,000, 50,000, and 35,000 mol wt. The reduced receptor exists as a single subunit of 25,000 mol wt, which may be disulfide linked to form the higher mol wt forms. The 70,000 and 50,000 mol wt subunits contain epitopes that bind Graves' Igs in modified Western blots, thus directly confirming that the human TSH receptor is a target for Graves' Igs.

Failure analysis of blots for diesel engine intercooler

NASA Astrophysics Data System (ADS)

Ren, Ping; Li, Zongquan; Wu, Jiangfei; Guo, Yibin; Li, Wanyou

2017-05-01

In diesel generating sets, it will lead to the abominable working condition if the fault couldn’t be recovered when the bolt of intercooler cracks. This paper aims at the fault of the blots of diesel generator intercooler and completes the analysis of the static strength and fatigue strength. Static intensity is checked considering blot preload and thermal stress. In order to obtain the thermal stress of the blot, thermodynamic of intercooler is calculated according to the measured temperature. Based on the measured vibration response and the finite element model, using dynamic load identification technique, equivalent excitation force of unit was solved. In order to obtain the force of bolt, the excitation force is loaded into the finite element model. By considering the thermal stress and preload as the average stress while the mechanical stress as the wave stress, fatigue strength analysis has been accomplished. Procedure of diagnosis is proposed in this paper. Finally, according to the result of intensity verification the fatigue failure is validation. Thereby, further studies are necessary to verification the result of the intensity analysis and put forward some improvement suggestion.

[Scientific Evaluation of Crude Drugs and Kampo Medicines Using the Eastern Blotting Method and Its Application to Biological Metabolic Studies].

PubMed

Morinaga, Osamu

2018-01-01

　The scientific evaluation of crude drugs and kampo medicines (KMs) was demonstrated using the eastern blotting method with monoclonal antibodies (MAbs) against bioactive natural compounds. Scutellariae radix is one of the most important crude drugs used in KMs. Part of its pharmaceutical properties is due to the flavone glycoside baicalin (BI). A quantitative analysis method based on eastern blotting was developed for BI using an anti-BI MAb. A rapid, simple, sensitive, specific analytical system was subsequently established for BI with the eastern blotting technique using dot-blot and chemiluminescent methods. This system was useful as a high-throughput analytical method for the determination of BI in KMs as well as HPLC and enzyme-linked immunosorbent assay systems. Furthermore, an eastern blotting method was applied to the biological metabolic study of glycyrrhizic acid (GL), the major active constituent of licorice, for investigation of metabolites of GL such as 3-monoglucuronyl-glycyrrhetinic acid (3MGA) because licorice causes pseudoaldosteronism as a side effect. This approach may make it possible to determine the pathogenic agents of licorice-induced pseudoaldosteronism.

Prolonged incubation and stacked film exposure improve sensitivity in western blotting.

PubMed

Luo, Haitao; Rankin, Gary O; Straley, Shannon; Chen, Yi Charlie

2011-01-01

Western blotting is a basic technique for protein detection. For proteins of less abundance or antibodies of poorer quality, an increased sensitivity is often desired. Although it is commonly known that higher concentrations of antibodies and prolonged film exposure times will help improve sensitivity in western blots, both measures come with their own risks, and it is often unclear to which extent these measures should be applied. We conducted time-course studies to investigate protein-antibody interactions and primary antibody-secondary antibody interactions in western blotting. We also propose a protocol of stacked film exposure and have tested it in standard curves and cancer cell samples. Our study found that protein-primary antibody interactions and primary antibody-secondary antibody interactions could take a longer time than commonly used "one hour" or "overnight", and in some cases longer than 48h, to reach its maximum binding. We also show that the modified protocol of stacked film exposure works well for both standard curves and biological samples, reaching a maximum sensitivity in western blots without blurring target signals or increasing backgrounds. In addition to regular optimization of antibody concentrations and film exposure time, a prolonged incubation with antibodies and stacked film exposure will also help improve sensitivity and reduce background in western blotting. Copyright © 2011 Elsevier Inc. All rights reserved.

Hydrothermal and tectonic activity in northern Yellowstone Lake, Wyoming

USGS Publications Warehouse

Johnson, S.Y.; Stephenson, W.J.; Morgan, L.A.; Shanks, Wayne C.; Pierce, K.L.

2003-01-01

Yellowstone National Park is the site of one of the world's largest calderas. The abundance of geothermal and tectonic activity in and around the caldera, including historic uplift and subsidence, makes it necessary to understand active geologic processes and their associated hazards. To that end, we here use an extensive grid of high-resolution seismic reflection profiles (???450 km) to document hydrothermal and tectonic features and deposits in northern Yellowstone Lake. Sublacustrine geothermal features in northern Yellowstone Lake include two of the largest known hydrothermal explosion craters, Mary Bay and Elliott's. Mary Bay explosion breccia is distributed uniformly around the crater, whereas Elliott's crater breccia has an asymmetric distribution and forms a distinctive, ???2-km-long, hummocky lobe on the lake floor. Hydrothermal vents and low-relief domes are abundant on the lake floor; their greatest abundance is in and near explosion craters and along linear fissures. Domed areas on the lake floor that are relatively unbreached (by vents) are considered the most likely sites of future large hydrothermal explosions. Four submerged shoreline terraces along the margins of northern Yellowstone Lake add to the Holocene record or postglacial lake-level fluctuations attributed to "heavy breathing" of the Yellowstone magma reservoir and associated geothermal system. The Lake Hotel fault cuts through northwestern Yellowstone Lake and represents part of a 25-km-long distributed extensional deformation zone. Three postglacial ruptures indicate a slip rate of ???0.27 to 0.34 mm/yr. The largest (3.0 m slip) and most recent event occurred in the past ???2100 yr. Although high heat flow in the crust limits the rupture area of this fault zone, future earthquakes of magnitude ???5.3 to 6.5 are possible. Earthquakes and hydrothermal explosions have probably triggered landslides, common features around the lake margins. Few high-resolution seismic reflection surveys have

Active transpression in the northern Calabria Apennines, southern Italy

NASA Astrophysics Data System (ADS)

Ferranti, L.; Santoro, E.; Mazzella, M. E.; Monaco, C.; Morelli, D.

2009-10-01

An integrated analysis of geomorphologic and structural data, offshore seismic profiles and local network seismicity, is used to shed light on the hitherto poorly known active deformation field that affects the Southern Apennines orogen in northern Calabria region. In the Southern Apennines, Middle Pleistocene waning of Miocene-Early Pleistocene thin-skinned frontal thrust belt motion toward the Apulian foreland to the NE was coeval to onset of regional uplift, which is documented by flights of raised marine terraces. Short-wavelength (˜ 5-10 km) and amplitude (˜ 20-50 m) undulations are superposed to the regional uplift (˜ 100 km length and ˜ 500 m amplitude scale) profile of Middle-Upper Pleistocene marine terraces on the Ionian Sea coast of northern Calabria stretching along the borders of the Sila and Pollino mountain ranges and across the intervening Sibari coastal plain. The secondary undulations spatially coincide with the last generation of ˜ W- to ˜ WNW-striking folds traced in bedrock and locally within Early to Middle Pleistocene continental to transitional deposits. The very recent activity of these structures is highlighted by a range of fluvial geomorphic anomalies and by involvement in folding and locally transpressional faulting of the Middle Pleistocene and younger depositional sequences submerged beneath the continental shelf. We argue that the local-scale, but pervasive undulations in the deformation profile of marine terraces represent shallow-crustal folds grown within a recent and still active transpressional field. A major structural culmination bound by fore- and retro-verging transpressional shear zones is represented by the Pollino mountain range and its offshore extension in the Amendolara ridge, and a further SW-directed transpressional belt is found in northern Sila and adjacent sea bottom. Epicenter distribution and focal solutions of low- to moderate crustal earthquakes illuminate the two NW-SE trending structural belts beneath

Fluorescence-based Western blotting for quantitation of protein biomarkers in clinical samples.

PubMed

Zellner, Maria; Babeluk, Rita; Diestinger, Michael; Pirchegger, Petra; Skeledzic, Senada; Oehler, Rudolf

2008-09-01

Since most high throughput techniques used in biomarker discovery are very time and cost intensive, highly specific and quantitative analytical alternative application methods are needed for the routine analysis. Conventional Western blotting allows detection of specific proteins to the level of single isotypes while its quantitative accuracy is rather limited. We report a novel and improved quantitative Western blotting method. The use of fluorescently labelled secondary antibodies strongly extends the dynamic range of the quantitation and improves the correlation with the protein amount (r=0.997). By an additional fluorescent staining of all proteins immediately after their transfer to the blot membrane, it is possible to visualise simultaneously the antibody binding and the total protein profile. This allows for an accurate correction for protein load. Applying this normalisation it could be demonstrated that fluorescence-based Western blotting is able to reproduce a quantitative analysis of two specific proteins in blood platelet samples from 44 subjects with different diseases as initially conducted by 2D-DIGE. These results show that the proposed fluorescence-based Western blotting is an adequate application technique for biomarker quantitation and suggest possibilities of employment that go far beyond.

SDS-Polyacrylamide Electrophoresis and Western Blotting Applied to the Study of Asthma.

PubMed

García-Solaesa, Virginia; Abad, Sara Ciria

2016-01-01

Western blotting is used to analyze proteins after being separated by electrophoresis and subsequently electro-transferred to a membrane. Once immobilized, a specific protein can be identified through its reaction with a labeled antibody or antigen. It is a methodology commonly used in biomedical research such as asthma studies, to assess the pathways of inflammatory mediators involved in the disease.Here, we describe an example of western blotting to determine the factors involved in asthma. In this chapter, the methodology of western blotting is reviewed, paying attention on potential problems and giving interesting recommendations.

Multistrip Western blotting: a tool for comparative quantitative analysis of multiple proteins.

PubMed

Aksamitiene, Edita; Hoek, Jan B; Kiyatkin, Anatoly

2015-01-01

The qualitative and quantitative measurements of protein abundance and modification states are essential in understanding their functions in diverse cellular processes. Typical Western blotting, though sensitive, is prone to produce substantial errors and is not readily adapted to high-throughput technologies. Multistrip Western blotting is a modified immunoblotting procedure based on simultaneous electrophoretic transfer of proteins from multiple strips of polyacrylamide gels to a single membrane sheet. In comparison with the conventional technique, Multistrip Western blotting increases data output per single blotting cycle up to tenfold; allows concurrent measurement of up to nine different total and/or posttranslationally modified protein expression obtained from the same loading of the sample; and substantially improves the data accuracy by reducing immunoblotting-derived signal errors. This approach enables statistically reliable comparison of different or repeated sets of data and therefore is advantageous to apply in biomedical diagnostics, systems biology, and cell signaling research.

Nocturnal activity patterns of northern myotis (Myotis septentrionalis) during the maternity season in West Virginia (USA)

USGS Publications Warehouse

Johnson, J.B.; Edwards, J.W.; Ford, W.M.

2011-01-01

Nocturnal activity patterns of northern myotis (Myotis septentrionalis) at diurnal roost trees remain largely uninvestigated. For example, the influence of reproductive status, weather, and roost tree and surrounding habitat characteristics on timing of emergence, intra-night activity, and entrance at their roost trees is poorly known. We examined nocturnal activity patterns of northern myotis maternity colonies during pregnancy and lactation at diurnal roost trees situated in areas that were and were not subjected to recent prescribed fires at the Fernow Experimental Forest, West Virginia from 2007 to 2009. According to exit counts and acoustic data, northern myotis colony sizes were similar between reproductive periods and roost tree settings. However, intra-night activity patterns differed slightly between reproductive periods and roost trees in burned and non-burned areas. Weather variables poorly explained variation in activity patterns during pregnancy, but precipitation and temperature were negatively associated with activity patterns during lactation. ?? Museum and Institute of Zoology PAS.

A Laboratory Exercise Illustrating the Sensitivity and Specificity of Western Blot Analysis

ERIC Educational Resources Information Center

Chang, Ming-Mei; Lovett, Janice

2011-01-01

Western blot analysis, commonly known as "Western blotting," is a standard tool in every laboratory where proteins are analyzed. It involves the separation of polypeptides in polyacrylamide gels followed by the electrophoretic transfer of the separated polypeptides onto a nitrocellulose or polyvinylidene fluoride membrane. A replica of the…

Effects of Reusing Gel Electrophoresis and Electrotransfer Buffers on Western Blotting.

PubMed

Heda, Ghanshyam D; Omotola, Oluwabukola B; Heda, Rajiv P; Avery, Jamie

2016-09-01

SDS-PAGE and Western blotting are 2 of the most commonly used biochemical methods for protein analysis. Proteins are electrophoretically separated based on their MWs by SDS-PAGE and then electrotransferred to a solid membrane surface for subsequent protein-specific analysis by immunoblotting, a procedure commonly known as Western blotting. Both of these procedures use a salt-based buffer, with the latter procedure consisting of methanol as an additive known for its toxicity. Previous reports present a contradictory view in favor or against reusing electrotransfer buffer, also known as Towbin's transfer buffer (TTB), with an aim to reduce the toxic waste. In this report, we present a detailed analysis of not only reusing TTB but also gel electrophoresis buffer (EB) on proteins of low to high MW range. Our results suggest that EB can be reused for at least 5 times without compromising the electrophoretic separation of mixture of proteins in an MW standard, BSA, and crude cell lysates. Additionally, reuse of EB did not affect the quality of subsequent Western blots. Successive reuse of TTB, on the other hand, diminished the signal of proteins of different MWs in a protein standard and a high MW membrane protein cystic fibrosis transmembrane-conductance regulator (CFTR) in Western blotting.

Treponema pallidum western blot: comparison with the FTA-ABS test as a confirmatory test for syphilis.

PubMed

Backhouse, J L; Nesteroff, S I

2001-01-01

We developed a Treponema pallidum Western blot and compared the results with Treponema pallidum particle agglutination (TPPA) and fluorescent treponemal antibody absorption (FTA-ABS) tests. The Western blot was deemed reactive if the serum reacted with at least three major antigenic bands (TpN47, TpN44.5, TpN17, TpN15). The sensitivities of the Western blot, TPPA and FTA-ABS, were all 100% and the specificities of the Western blot, TPPA and FTA-ABS were 100%, 100% and 94.5% respectively. In 52 problem sera, reactive in only one treponemal test, the agreement between the Western blot and TPPA (61.5%) was significantly better than between Western blot and FTA-ABS (38.5%). The individual sensitivities and specificities of TpN47, TpN44.5, TpN17, TpN15 were 100%, 100%, 96%, 100% and 20%, 96%, 100%, 100% respectively. We conclude that the Western blot is a useful additional confirmatory test or alternative to the FTA-ABS and that a more sensitive and specific criterion for the Western blot would be reactivity with TpN15 and two of the three other major antigens.

Normalized Quantitative Western Blotting Based on Standardized Fluorescent Labeling.

PubMed

Faden, Frederik; Eschen-Lippold, Lennart; Dissmeyer, Nico

2016-01-01

Western blot (WB) analysis is the most widely used method to monitor expression of proteins of interest in protein extracts of high complexity derived from diverse experimental setups. WB allows the rapid and specific detection of a target protein, such as non-tagged endogenous proteins as well as protein-epitope tag fusions depending on the availability of specific antibodies. To generate quantitative data from independent samples within one experiment and to allow accurate inter-experimental quantification, a reliable and reproducible method to standardize and normalize WB data is indispensable. To date, it is a standard procedure to normalize individual bands of immunodetected proteins of interest from a WB lane to other individual bands of so-called housekeeping proteins of the same sample lane. These are usually detected by an independent antibody or colorimetric detection and do not reflect the real total protein of a sample. Housekeeping proteins-assumed to be constitutively expressed mostly independent of developmental and environmental states-can greatly differ in their expression under these various conditions. Therefore, they actually do not represent a reliable reference to normalize the target protein's abundance to the total amount of protein contained in each lane of a blot.Here, we demonstrate the Smart Protein Layers (SPL) technology, a combination of fluorescent standards and a stain-free fluorescence-based visualization of total protein in gels and after transfer via WB. SPL allows a rapid and highly sensitive protein visualization and quantification with a sensitivity comparable to conventional silver staining with a 1000-fold higher dynamic range. For normalization, standardization and quantification of protein gels and WBs, a sample-dependent bi-fluorescent standard reagent is applied and, for accurate quantification of data derived from different experiments, a second calibration standard is used. Together, the precise quantification of

HIV‑2 antibody detection after indeterminate or negative HIV‑1 Western blot in Cuba, 2005-2008.

PubMed

Díaz, Dervel F; Ortiz, Eva; Martín, Dayamí; Nibot, Carmen; Rizo, Adis; Silva, Eladio

2012-01-01

INTRODUCTION Differentiating between HIV-1 and HIV-2 infection is the first step to understanding HIV transmission, epidemiology and pathogenesis in geographical areas where both viruses circulate. In Cuba, positive results in mixed HIV-1/2 screening assays are confirmed by HIV-1 Western blot. Indeterminate results constitute the main limitation of this test and HIV-2 infection is among their possible causes; hence the importance of second-stage screening and confirmatory tests for HIV-2 infection. OBJECTIVE Investigate the contribution of HIV-2 antibodies to negative or indeterminate HIV-1 Western blot results in serum samples from 2005 through 2008 in Cuba. METHODS HIV-2 reactivity was studied using the ELISA DAVIH-VIH-2 diagnostic kit (Cuba) in 1723 serum samples with negative or indeterminate results for HIV-1 Western blot from January 2005 through December 2008. Duplicate sera reactive by ELISA were confirmed by HIV-2 Western blot, results interpreted according to WHO criteria. The epidemiological interview established by Cuba's National Program for Prevention and Control Sexually-Transmitted Diseases and HIV/AIDS was applied to HIV-2 Western blot-positive patients. RESULTS Among all sera studied, HIV-2 ELISA identified 12 reactive serum samples (0.70%) and 1711 non-reactive (99.30%). Western blot analysis of the 12 ELISA-reactive samples confirmed two positive samples (16.67%), 4 negative (33.33%) and 6 indeterminate (50%). Positive samples reacted against the p16, p26, gp36, p53, p56, p68 and gp105 proteins. All 12 ELISA-reactive samples belonged to the HIV-1 Western blot indeterminate group. The two HIV-2-positive samples showed well defined reactivity to gp160, p53, p55 and p34 of HIV-1. HIV-1 seroconversion was observed in all 10 remaining samples during serological followup. CONCLUSIONS Two new HIV-2 seropositive cases were diagnosed using DAVIH-VIH-2 and HIV-2 Western blot in indeterminate HIV-1 Western blot samples. Results support the recommendation

Lectin-Array Blotting.

PubMed

Pazos, Raquel; Echevarria, Juan; Hernandez, Alvaro; Reichardt, Niels-Christian

2017-09-01

Aberrant protein glycosylation is a hallmark of cancer, infectious diseases, and autoimmune or neurodegenerative disorders. Unlocking the potential of glycans as disease markers will require rapid and unbiased glycoproteomics methods for glycan biomarker discovery. The present method is a facile and rapid protocol for qualitative analysis of protein glycosylation in complex biological mixtures. While traditional lectin arrays only provide an average signal for the glycans in the mixture, which is usually dominated by the most abundant proteins, our method provides individual lectin binding profiles for all proteins separated in the gel electrophoresis step. Proteins do not have to be excised from the gel for subsequent analysis via the lectin array but are transferred by contact diffusion from the gel to a glass slide presenting multiple copies of printed lectin arrays. Fluorescently marked glycoproteins are trapped by the printed lectins via specific carbohydrate-lectin interactions and after a washing step their binding profile with up to 20 lectin probes is analyzed with a fluorescent scanner. The method produces the equivalent of 20 lectin blots in a single experiment, giving detailed insight into the binding epitopes present in the fractionated proteins. © 2017 by John Wiley & Sons, Inc. Copyright © 2017 John Wiley & Sons, Inc.

Active Tectonics Around Pisagua, Northern Chile Gap: Seismological and Neotectonic Approaches

NASA Astrophysics Data System (ADS)

Comte, D.; Carrizo, D.; Peyrat, S.

2013-12-01

Northern Chile is a recognized mature seismic gap that is reaching the end of its megathrust cycle. Deformation associated with the convergence between the Nazca and the South American Plates is mainly absorbed along the interplate contact, but also partially accommodated along the upper plate. Even though distribution of the active deformation along this plate has been documented mainly in the backarc region, Late Cenozoic structures have been recognized along the forearc suggesting that some part of this deformation is also accommodated along the coastal region. Recent paleoseismological studies suggest that some of these structures are tectonically active and some could be potentially active, capable to generate shallow intraplate earthquakes (Mw˜7). However, seismological and geodetical evidences of the fault activation mechanisms are poorly documented, and the activation process remain not elucidate. Currently, Northern Chile seismic gap is monitored by regional seismic networks and partially studied by temporary local seismological experiments. Results of these studies suggest the presence of shallow seismicity along the forearc, but the relationships between upper plate faults and the seismicity has not been yet explored. We perform a detailed seismotectonic analysis of the subduction-forearc system in the central part of the Northern Chile seismic gap to establish relationships between the plate contact deformation and the upper plate faults. We present preliminary results of data recorded by a dense seismic network (three components continuous recording) deployed around Pisagua, between the coastline and the Central Depression, during several months. Pisagua region was chosen because the forearc faults exhibit an extraordinary well-preserved morphotectonic expression, and the upper part of the seismogenic interplate contact shows abundant continental intraplate seismicity that could be associated with the faults systems. The data recorded in this area

Line scanning system for direct digital chemiluminescence imaging of DNA sequencing blots

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karger, A.E.; Weiss, R.; Gesteland, R.F.

A cryogenically cooled charge-coupled device (CCD) camera equipped with an area CCD array is used in a line scanning system for low-light-level imaging of chemiluminescent DNA sequencing blots. Operating the CCD camera in time-delayed integration (TDI) mode results in continuous data acquisition independent of the length of the CCD array. Scanning is possible with a resolution of 1.4 line pairs/mm at the 50% level of the modulation transfer function. High-sensitivity, low-light-level scanning of chemiluminescent direct-transfer electrophoresis (DTE) DNA sequencing blots is shown. The detection of DNA fragments on the blot involves DNA-DNA hybridization with oligonucleotide-alkaline phosphatase conjugate and 1,2-dioxetane-based chemiluminescence.more » The width of the scan allows the recording of up to four sequencing reactions (16 lanes) on one scan. The scan speed of 52 cm/h used for the sequencing blots corresponds to a data acquisition rate of 384 pixels/s. The chemiluminescence detection limit on the scanned images is 3.9 [times] 10[sup [minus]18] mol of plasmid DNA. A conditional median filter is described to remove spikes caused by cosmic ray events from the CCD images. 39 refs., 9 refs.« less

Lipid A binding proteins in macrophages detected by ligand blotting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hampton, R.Y.; Golenbock, D.T.; Raetz, C.R.H.

1987-05-01

Endotoxin (LPS) stimulates a variety of eukaryotic cells. These actions are involved in the pathogenesis of Gram-negative septicemia. The site of action of the LPS toxic moiety, lipid A (LA), is unclear. Their laboratory has previously identified a bioactive LA precursor lipid IV/sub A/, which can be enzymatically labeled with /sup 32/P/sub i/ (10/sup 9/ dpm/nmole) and purified (99%). They now show that this ligand binds to specific proteins immobilized on nitrocellulose (NC) from LPS-sensitive RAW 264.7 cultured macrophages. NC blots were incubated with (/sup 32/P)-IV/sub A/ in a buffer containing BSA, NaCl, polyethylene glycol, and azide. Binding was assessedmore » using autoradiography or scintillation counting. Dot blot binding of the radioligand was inhibited by excess cold IV/sub A/, LA, or ReLPS but not by phosphatidylcholine, cardiolipin, phosphatidylinositol, or phosphatidic acid. Binding was trypsin-sensitive and dependent on protein concentration. Particulate macrophage proteins were subjected to SDS-PAGE and then electroblotted onto NC. Several discrete binding proteins were observed. Identical treatment of fetal bovine serum or molecular weight standards revealed no detectable binding. By avoiding high nonspecific binding of intact membranes, this ligand blotting assay may be useful in elucidating the molecular actions of LPS.« less

Establishment and application of a modified membrane-blot assay for Rhizomucor miehei lipases aimed at improving their methanol tolerance and thermostability.

PubMed

He, Dong; Luo, Wen; Wang, Zhiyuan; Lv, Pengmei; Yuan, Zhenhong; Huang, Shaowei; Xv, Jingliang

2017-07-01

Directed evolution has been proved an effective way to improve the stability of proteins, but high throughput screening assays for directed evolution with simultaneous improvement of two or more properties are still rare. In this study, we aimed to establish a membrane-blot assay for use in the high-throughput screening of Rhizomucor miehei lipases (RMLs). With the assistance of the membrane-blot screening assay, a mutant E47K named G10 that showed improved thermal stability was detected in the first round of error-prone PCR. Using G10 as the parent, two variants G10-11 and G10-20 that showed improved thermal stability and methanol tolerance without loss of activity compared to the wild type RML were obtained. The T 50 60 -value of G10-11 and G10-20 increased by 12°C and 6.5°C, respectively. After incubation for 1h, the remaining residual activity of G10-11 and G10-20 was 63.45% and 74.33%, respectively, in 50% methanol, and 15.98% and 30.22%, respectively, in 80% methanol. Thus, we successfully developed a membrane-blot assay that could be used for the high-throughput screening of RMLs with improved thermostability and methanol tolerance. Based on our findings, we believe that our newly developed membrane-blot assay will have potential applications in directed evolution in the future. Copyright © 2017 Elsevier Inc. All rights reserved.

Active deformation processes of the Northern Caucasus deduced from the GPS observations

NASA Astrophysics Data System (ADS)

Milyukov, Vadim; Mironov, Alexey; Rogozhin, Eugeny; Steblov, Grigory; Gabsatarov, Yury

2015-04-01

The Northern Caucasus, as a part of the Alpine-Himalayan mobile belt, is a zone of complex tectonics associated with the interaction of the two major tectonic plates, Arabian and Eurasian. The first GPS study of the contemporary geodynamics of the Caucasus mountain system were launched in the early 1990s in the framework of the Russia-US joint project. Since 2005 observations of the modern tectonic motion of the Northern Caucasus are carried out using the continuous GPS network. This network encompasses the territory of three Northern Caucasian Republics of the Russian Federation: Karachay-Cherkessia, Kabardino-Balkaria, and North Ossetia. In the Ossetian part of the Northern Caucasus the network of GPS survey-mode sites has been deployed as well. The GPS velocities confirm weak general compression of the Northern Caucasus with at the rate of about 1-2 mm/year. This horizontal motion at the boundary of the Northern Caucasus with respect to the Eurasian plate causes the higher seismic and tectonic activity of this transition zone. This result confirms that the source of deformation of the Northern Caucasus is the sub-meridional drift of the Arabian plate towards the adjacent boundary of the Eastern European part of the Eurasian lithospheric plate. The concept of such convergence implies that the Caucasian segment of the Alpine-Himalayan mobile belt is under compression, the layers of sedimentary and volcanic rocks are folded, the basement blocks are subject to shifts in various directions, and the upper crust layers are ruptured by reverse faults and thrusts. Weak deviation of observed velocities from the pattern corresponding to homogeneous compression can also be revealed, and numerical modeling of deformations of major regional tectonic structures, such as the Main Caucasus Ridge, can explain this. The deformation tensor deduced from the velocity field also exhibits the sub-meridional direction of the major compressional axes which coincides with the direction of

BLOTS AND ALL: A HISTORY OF THE RORSCHACH INK BLOT TEST IN BRITAIN.

PubMed

Hubbard, Katherine; Hegarty, Peter

2016-01-01

Despite the easily recognizable nature of the Rorschach ink blot test very little is known about the history of the test in Britain. We attend to the oft-ignored history of the Rorschach test in Britain and compare it to its history in the US. Prior to the Second World War, Rorschach testing in Britain had attracted advocates and critiques. Afterward, the British Rorschach Forum, a network with a high proportion of women, developed around the Tavistock Institute in London and The Rorschach Newsletter. In 1968, the International Rorschach Congress was held in London but soon after the group became less exclusive, and fell into decline. A comparative account of the Rorschach in Britain demonstrates how different national institutions invested in the 'projective hypothesis' according to the influence of psychoanalysis, the adoption of a nationalized health system, and the social positioning of 'others' throughout the twentieth century. In comparing and contrasting the history of the Rorschach in Britain and the US, we decentralize and particularize the history of North American Psychology. © 2016 Wiley Periodicals, Inc.

Fault zone structure and inferences on past activities of the active Shanchiao Fault in the Taipei metropolis, northern Taiwan

NASA Astrophysics Data System (ADS)

Chen, C.; Lee, J.; Chan, Y.; Lu, C.

2010-12-01

The Taipei Metropolis, home to around 10 million people, is subject to seismic hazard originated from not only distant faults or sources scattered throughout the Taiwan region, but also active fault lain directly underneath. Northern Taiwan including the Taipei region is currently affected by post-orogenic (Penglai arc-continent collision) processes related to backarc extension of the Ryukyu subduction system. The Shanchiao Fault, an active normal fault outcropping along the western boundary of the Taipei Basin and dipping to the east, is investigated here for its subsurface structure and activities. Boreholes records in the central portion of the fault were analyzed to document the stacking of post- Last Glacial Maximum growth sediments, and a tulip flower structure is illuminated with averaged vertical slip rate of about 3 mm/yr. Similar fault zone architecture and post-LGM tectonic subsidence rate is also found in the northern portion of the fault. A correlation between geomorphology and structural geology in the Shanchiao Fault zone demonstrates an array of subtle geomorphic scarps corresponds to the branch fault while the surface trace of the main fault seems to be completely erased by erosion and sedimentation. Such constraints and knowledge are crucial in earthquake hazard evaluation and mitigation in the Taipei Metropolis, and in understanding the kinematics of transtensional tectonics in northern Taiwan. Schematic 3D diagram of the fault zone in the central portion of the Shanchiao Fault, displaying regional subsurface geology and its relation to topographic features.

Protein analysis through Western blot of cells excised individually from human brain and muscle tissue

PubMed Central

Koob, A.O.; Bruns, L.; Prassler, C.; Masliah, E.; Klopstock, T.; Bender, A.

2016-01-01

Comparing protein levels from single cells in tissue has not been achieved through Western blot. Laser capture microdissection allows for the ability to excise single cells from sectioned tissue and compile an aggregate of cells in lysis buffer. In this study we analyzed proteins from cells excised individually from brain and muscle tissue through Western blot. After we excised individual neurons from the substantia nigra of the brain, the accumulated surface area of the individual cells was 120,000, 24,000, 360,000, 480,000, 600,000 μm2. We used an optimized Western blot protocol to probe for tyrosine hydroxylase in this cell pool. We also took 360,000 μm2 of astrocytes (1700 cells) and analyzed the specificity of the method. In muscle we were able to analyze the proteins of the five complexes of the electron transport chain through Western blot from 200 human cells. With this method, we demonstrate the ability to compare cell-specific protein levels in the brain and muscle and describe for the first time how to visualize proteins through Western blot from cells captured individually. PMID:22402104

Protein analysis through Western blot of cells excised individually from human brain and muscle tissue.

PubMed

Koob, A O; Bruns, L; Prassler, C; Masliah, E; Klopstock, T; Bender, A

2012-06-15

Comparing protein levels from single cells in tissue has not been achieved through Western blot. Laser capture microdissection allows for the ability to excise single cells from sectioned tissue and compile an aggregate of cells in lysis buffer. In this study we analyzed proteins from cells excised individually from brain and muscle tissue through Western blot. After we excised individual neurons from the substantia nigra of the brain, the accumulated surface area of the individual cells was 120,000, 24,000, 360,000, 480,000, 600,000 μm2. We used an optimized Western blot protocol to probe for tyrosine hydroxylase in this cell pool. We also took 360,000 μm2 of astrocytes (1700 cells) and analyzed the specificity of the method. In muscle we were able to analyze the proteins of the five complexes of the electron transport chain through Western blot from 200 human cells. With this method, we demonstrate the ability to compare cell-specific protein levels in the brain and muscle and describe for the first time how to visualize proteins through Western blot from cells captured individually. Copyright © 2012 Elsevier Inc. All rights reserved.

Blotting from PhastGel to Membranes by Ultrasound.

PubMed

Kost, Joseph; Azagury, Aharon

2015-01-01

Ultrasound based approach for enhanced protein blotting is proposed. Three minutes of ultrasound exposure (1 MHz, 2.5 W/cm(2)) was sufficient for a clear transfer of proteins from a polyacrylamide gel (PhastGel) to nitrocellulose or Nylon 66 Biotrans membrane. The proteins evaluated were prestained sodium dodecyl sulfate-polyacrylamide standards (18,500-106,000 Da) and 14C-labeled Rainbow protein molecular weight markers (14,300-200,000 Da).

Blotting from PhastGel to membranes by ultrasound.

PubMed

Kost, Joseph

2009-01-01

Ultrasound-based approach for enhanced protein blotting is proposed. Three minutes of ultrasound exposure (1 MHz, 2.5 W/cm(2)) was sufficient for a clear transfer of proteins from a polyacrylamide gel (PhastGel) to nitrocellulose or Nylon 66 Biotrans membrane. The proteins evaluated were prestained sodium dodecyl sulfate-polyacrylamide standards (18,500-106,000 Da) and (14)C-labeled Rainbow protein molecular weight markers (14,300-200,000 Da).

Intense Convective Activity Over Northern Bay of Bengal during Late Southwest Monsoon

NASA Astrophysics Data System (ADS)

Mathew, S.; Venkatesan, R.; Natesan, U.; G, L.

2016-02-01

Warming of the northern Bay of Bengal during late southwest monsoon was very much influenced by the intensity of freshening by river discharges. The inter-annual variability of freshening and associated warming was analyzed for 2011 to 2015, with the help of in-situ data obtained from the moored buoys deployed at specific locations in northern Bay of Bengal. The shoaling of mixed layer depth associated with the advection of freshwaters has favored intense warming and supported convective activity thereby. The year 2011 recorded highest freshening with salinity touched as low as 21.3 p.s.u.; with the heavy river discharges, resulted from intense rainfall over catchment areas of rivers that discharged into the bay, due to positive Indian Ocean Dipole and La-Nina affect. It has resulted in intense warming of the surface temperature by 2°C, which persisted for nearly three weeks. The year 2014 was least fresh, with no signature of freshening and associated warming. The latent heat flux term computed from the moored buoy using the COARE 3.5 algorithm showed increased loss of latent heat flux during the late monsoon associated with the warming. It directly supported increased convective activity and delayed the withdrawal of monsoon activity from Indian sub-continent. Two depressions with intense convective activity formed over bay during September of 2011 which delayed the withdrawal of monsoon by three weeks.

PCR colorimetric dot-blot assay and clinical pretest probability for diagnosis of Pulmonary Tuberculosis in Smear-Negative patients

PubMed Central

Scherer, Luciene Cardoso; Sperhacke, Rosa Dea; Jarczewski, Carla; Cafrune, Patrícia I; Minghelli, Simone; Ribeiro, Marta Osório; Mello, Fernanda CQ; Ruffino-Netto, Antonio; Rossetti, Maria LR; Kritski, Afrânio L

2007-01-01

Background Smear-negative pulmonary tuberculosis (SNPTB) accounts for 30% of Pulmonary Tuberculosis (PTB) cases reported annually in developing nations. Polymerase chain reaction (PCR) may provide an alternative for the rapid detection of Mycobacterium tuberculosis (MTB); however little data are available regarding the clinical utility of PCR in SNPTB, in a setting with a high burden of TB/HIV co-infection. Methods To evaluate the performance of the PCR dot-blot in parallel with pretest probability (Clinical Suspicion) in patients suspected of having SNPTB, a prospective study of 213 individuals with clinical and radiological suspicion of SNPTB was carried out from May 2003 to May 2004, in a TB/HIV reference hospital. Respiratory specialists estimated the pretest probability of active disease into high, intermediate, low categories. Expectorated sputum was examined by direct microscopy (Ziehl-Neelsen staining), culture (Lowenstein Jensen) and PCR dot-blot. Gold standard was based on culture positivity combined with the clinical definition of PTB. Results In smear-negative and HIV subjects, active PTB was diagnosed in 28.4% (43/151) and 42.2% (19/45), respectively. In the high, intermediate and low pretest probability categories active PTB was diagnosed in 67.4% (31/46), 24% (6/25), 7.5% (6/80), respectively. PCR had sensitivity of 65% (CI 95%: 50%–78%) and specificity of 83% (CI 95%: 75%–89%). There was no difference in the sensitivity of PCR in relation to HIV status. PCR sensitivity and specificity among non-previously TB treated and those treated in the past were, respectively: 69%, 43%, 85% and 80%. The high pretest probability, when used as a diagnostic test, had sensitivity of 72% (CI 95%:57%–84%) and specificity of 86% (CI 95%:78%–92%). Using the PCR dot-blot in parallel with high pretest probability as a diagnostic test, sensitivity, specificity, positive and negative predictive values were: 90%, 71%, 75%, and 88%, respectively. Among non

A new background subtraction method for Western blot densitometry band quantification through image analysis software.

PubMed

Gallo-Oller, Gabriel; Ordoñez, Raquel; Dotor, Javier

2018-06-01

Since its first description, Western blot has been widely used in molecular labs. It constitutes a multistep method that allows the detection and/or quantification of proteins from simple to complex protein mixtures. Western blot quantification method constitutes a critical step in order to obtain accurate and reproducible results. Due to the technical knowledge required for densitometry analysis together with the resources availability, standard office scanners are often used for the imaging acquisition of developed Western blot films. Furthermore, the use of semi-quantitative software as ImageJ (Java-based image-processing and analysis software) is clearly increasing in different scientific fields. In this work, we describe the use of office scanner coupled with the ImageJ software together with a new image background subtraction method for accurate Western blot quantification. The proposed method represents an affordable, accurate and reproducible approximation that could be used in the presence of limited resources availability. Copyright © 2018 Elsevier B.V. All rights reserved.

A population-based study of active and drug-resistant epilepsies in Northern Italy.

PubMed

Giussani, Giorgia; Canelli, Valentina; Bianchi, Elisa; Franchi, Carlotta; Nobili, Alessandro; Erba, Giuseppe; Beghi, Ettore

2016-02-01

Drug-resistant epilepsy (DRE) is defined by the International League Against Epilepsy as a failure of adequate trials of two tolerated, appropriately chosen, and used antiepileptic drugs to achieve sustained seizure freedom. Our aim was to calculate the following: (1) the prevalence of active epilepsy and DRE in a well-defined population of Northern Italy and (2) the proportion of incident cases developing DRE. The study population (146,506; year 2008) resided in the province of Lecco, Northern Italy. The medical records of 123 general practitioners were reviewed to identify patients with epilepsy, diagnosed by a neurologist during the period 2000-2008. The point prevalence of active epilepsy and DRE was calculated on December 31, 2008. A total of 747 prevalent patients with epilepsy, 684 patients with active epilepsy, and 342 incident cases were identified. The frequency of DRE was 15.6% (107/684) of all active epilepsies and 10.5% (36/342) of incident cases. The point prevalence was 0.73 per 1000. The standardized prevalence of DRE was 0.7 per 1000 (Italian population) and 0.8 per 1000 (world population). Our data indicate that 1/6 patients with active epilepsy in the general population has DRE, and 1/10 patients with newly diagnosed epilepsy will develop DRE within nine years from the diagnosis. Copyright © 2015 Elsevier Inc. All rights reserved.

Conditions that allow for effective transfer of membrane proteins onto nitrocellulose membrane in Western blots.

PubMed

Abeyrathne, Priyanka D; Lam, Joseph S

2007-04-01

A major hurdle in characterizing bacterial membrane proteins by Western blotting is the ineffectiveness of transferring these proteins from sodium dodecyl sulfate -- polyacrylamide gel electrophoresis (SDS-PAGE) gel onto nitrocellulose membrane, using standard Western blot buffers and electrophoretic conditions. In this study, we compared a number of modified Western blotting buffers and arrived at a composition designated as the SDS-PAGE-Urea Lysis buffer. The use of this buffer and specific conditions allowed the reproducible transfer of highly hydrophobic bacterial membrane proteins with 2-12 transmembrane-spanning segments as well as soluble proteins onto nitrocellulose membranes. This method should be broadly applicable for immunochemical studies of other membrane proteins.

Observations of the northern seasonal polar cap on Mars: I. Spring sublimation activity and processes

USGS Publications Warehouse

Hansen, C.J.; Byrne, S.; Portyankina, G.; Bourke, M.; Dundas, C.; McEwen, A.; Mellon, M.; Pommerol, A.; Thomas, N.

2013-01-01

Spring sublimation of the seasonal CO2 northern polar cap is a dynamic process in the current Mars climate. Phenomena include dark fans of dune material propelled out onto the seasonal ice layer, polygonal cracks in the seasonal ice, sand flow down slipfaces, and outbreaks of gas and sand around the dune margins. These phenomena are concentrated on the north polar erg that encircles the northern residual polar cap. The Mars Reconnaissance Orbiter has been in orbit for three Mars years, allowing us to observe three northern spring seasons. Activity is consistent with and well described by the Kieffer model of basal sublimation of the seasonal layer of ice applied originally in the southern hemisphere. Three typical weak spots have been identified on the dunes for escape of gas sublimed from the bottom of the seasonal ice layer: the crest of the dune, the interface of the dune with the interdune substrate, and through polygonal cracks in the ice. Pressurized gas flows through these vents and carries out material entrained from the dune. Furrows in the dunes channel gas to outbreak points and may be the northern equivalent of southern radially-organized channels (“araneiform” terrain), albeit not permanent. Properties of the seasonal CO2 ice layer are derived from timing of seasonal events such as when final sublimation occurs. Modification of dune morphology shows that landscape evolution is occurring on Mars today, driven by seasonal activity associated with sublimation of the seasonal CO2 polar cap.

Project DAFNE - Drilling Active Faults in Northern Europe

NASA Astrophysics Data System (ADS)

Kukkonen, I. T.; Ask, M. S. V.; Olesen, O.

2012-04-01

We are currently developing a new ICDP project 'Drillling Active Faults in Northern Europe' (DAFNE) which aims at investigating, via scientific drilling, the tectonic and structural characteristics of postglacial (PG) faults in northern Fennoscandia, including their hydrogeology and associated deep biosphere [1, 2]. During the last stages of the Weichselian glaciation (ca. 9,000 - 15,000 years B.P.), reduced ice load and glacially affected stress field resulted in active faulting in Fennoscandia with fault scarps up to 160 km long and 30 m high. These postglacial (PG) faults are usually SE dipping, SW-NE oriented thrusts, and represent reactivated, pre-existing crustal discontinuities. Postglacial faulting indicates that the glacio-isostatic compensation is not only a gradual viscoelastic phenomenon, but includes also unexpected violent earthquakes, suggestively larger than other known earthquakes in stable continental regions. The research is anticipated to advance science in neotectonics, hydrogeology and deep biosphere studies, and provide important information for nuclear waste and CO2 disposal, petroleum exploration on the Norwegian continental shelf and studies of mineral resources in PG fault areas. We expect that multidisciplinary research applying shallow and deep drilling of postglacial faults would provide significant scientific results through generating new data and models, namely: (1) Understanding PG fault genesis and controls of their locations; (2) Deep structure and depth extent of PG faults; (3) Textural, mineralogical and physical alteration of rocks in the PG faults; (4) State of stress and estimates of paleostress of PG faults; (5) Hydrogeology, hydrochemistry and hydraulic properties of PG faults; (6) Dating of tectonic reactivation(s) and temporal evolution of tectonic systems hosting PG faults; (7) Existence/non-existence of deep biosphere in PG faults; (8) Data useful for planning radioactive waste disposal in crystalline bedrock; (9) Data

Distribution of activity at the solar active longitudes between 1979 - 2011 in the northern hemisphere

NASA Astrophysics Data System (ADS)

Gyenge, N.; Baranyi, T.; Ludmány, A.

The solar active longitudes were studied in the northern hemisphere in cycles 22 and 23 by using data of DPD sunspot catalogue. The active longitudes are not fixed in the Carrington system, they have a well recognizable migration path between the descending phase of cycle 21 (from about 1984) and ascending phase of cycle 23 (until about 1996), out of this interval the migration path is ambiguous. The longitudinal distribution on both sides of the path has been computed and averaged for the length of the path. The so-called flip-flop phenomenon, when the activity temporarily gets to the opposite longitude, can also be recognized. The widths of the active domains are fairly narrow in the increasing and decaying phases of cycle 22, their half widths are about 20°-30° for both the main and secondary active belts but it is more flat and stretched around the maximum with a half width of about 60°.

Automated capillary Western dot blot method for the identity of a 15-valent pneumococcal conjugate vaccine.

PubMed

Hamm, Melissa; Ha, Sha; Rustandi, Richard R

2015-06-01

Simple Western is a new technology that allows for the separation, blotting, and detection of proteins similar to a traditional Western except in a capillary format. Traditionally, identity assays for biological products are performed using either an enzyme-linked immunosorbent assay (ELISA) or a manual dot blot Western. Both techniques are usually very tedious, labor-intensive, and complicated for multivalent vaccines, and they can be difficult to transfer to other laboratories. An advantage this capillary Western technique has over the traditional manual dot blot Western method is the speed and the automation of electrophoresis separation, blotting, and detection steps performed in 96 capillaries. This article describes details of the development of an automated identity assay for a 15-valent pneumococcal conjugate vaccine, PCV15-CRM197, using capillary Western technology. Copyright © 2015 Elsevier Inc. All rights reserved.

Nocturnal activity patterns of northern myotis (Myotis septentrionalis) during the maternity season in West Virginia (USA)

Treesearch

Joshua B. Johnson; John W. Edwards; W. Mark Ford

2011-01-01

Nocturnal activity patterns of northern myotis (Myotis septentrionalis) at diurnal roost trees remain largely uninvestigated. For example, the influence of reproductive status, weather, and roost tree and surrounding habitat characteristics on timing of emergence, intra-night activity, and entrance at their roost trees is poorly known. We examined...

β-actin as a loading control for plasma-based Western blot analysis of major depressive disorder patients.

PubMed

Zhang, Rufang; Yang, Deyu; Zhou, Chanjuan; Cheng, Ke; Liu, Zhao; Chen, Liang; Fang, Liang; Xie, Peng

2012-08-15

Western blot analysis is a commonly used technique for determining specific protein levels in clinical samples. For normalization of protein levels in Western blot, a suitable loading control is required. On account of its relatively high and constant expression, β-actin has been widely employed in Western blot of cell cultures and tissue extracts. However, β-actin's presence in human plasma and this protein's putative role as a plasma-based loading control for Western blot analysis remain unknown. In this study, an enzyme-linked immunosorbent assay was used to determine the concentration of β-actin in human plasma, which is 6.29±0.54 ng/ml. In addition, the linearity of β-actin immunostaining and loaded protein amount was evaluated by Western blot, and a fine linearity (R²=0.974±0.012) was observed. Furthermore, the expression of plasma β-actin in major depressive disorder subjects and healthy controls was compared. The data revealed no statistically significant difference between these two groups. Moreover, the total coefficient of variation for β-actin expression in the two groups was 9.2±1.2%. These findings demonstrate that β-actin is present in human plasma and may possibly be used as a suitable loading control for plasma-based Western blot analysis in major depressive disorder. Copyright © 2012 Elsevier Inc. All rights reserved.

Fluorescent Labeling of Proteins and Its Application to SDS-PAGE and Western Blotting.

PubMed

Alba, F Javier; Bartolomé, Salvador; Bermúdez, Antonio; Daban, Joan-Ramon

2015-01-01

This chapter describes very simple fluorescent methods developed in our laboratory allowing the rapid monitoring of total protein patterns on both sodium dodecyl sulfate (SDS) polyacrylamide gels and western blots. The noncovalent dye Nile red (9-diethylamino-5H-benzo[α]phenoxazine-5-one) is used for the sensitive staining of proteins in SDS gels. This method is compatible with the electroblotting of protein bands and with the staining of the resulting blot with the covalent dye MDPF (2-methoxy-2,4-diphenyl-3(2H)-furanone). These staining procedures are applied sequentially; there is no need to run a duplicate unstained gel for protein blotting. Furthermore, since only the adduct formed by the reaction of MDPF with proteins is fluorescent, there is no need to destain the membrane after protein labeling. In addition, MDPF staining is compatible with further immunodetection of specific bands with polyclonal antibodies. Finally, using the adequate conditions described below, MDPF staining does not preclude the N-terminal sequence analysis of proteins in selected bands.

Physical activity of young people in the Torres Strait and Northern Peninsula Region: an exploratory study.

PubMed

Abbott, Rebecca; Jenkins, David; Haswell-Elkins, Melissa; Fell, Karla; MacDonald, Doune; Cerin, Ester

2008-10-01

The present study explored the practices of, and perceived barriers to, physical activity of young people living in remote communities in the Torres Strait and Northern Peninsula Area of Far North Queensland. A cross-sectional survey exploring physical activity practices of children attending primary and secondary schools in two communities in the Torres Strait, Far North Queensland. A total of 367 primary and secondary school-aged children (aged 9-16 years). Only 50% of the children reported being active for more than 30 min a day and approximately 25% of both primary and high school children surveyed were 'pretty much active only at week-ends'. The major barriers cited to being active were related to the climate, lack of equipment and child-specific activities and low self-perception of ability. A large proportion of school students in the Torres Strait and Northern Peninsula Area reported low levels of physical activity. The main barriers cited to being active suggest that structural and family-based strategies are required to help young people, especially girls, to engage in more physical activity. There is also a need for skills and confidence-building activities delivered in a non-competitive environment for those who feel that they lack the necessary skills to participate fully.

A 5-mC Dot Blot Assay Quantifying the DNA Methylation Level of Chondrocyte Dedifferentiation In Vitro.

PubMed

Jia, Zhaofeng; Liang, Yujie; Ma, Bin; Xu, Xiao; Xiong, Jianyi; Duan, Li; Wang, Daping

2017-05-17

The dedifferentiation of hyaline chondrocytes into fibroblastic chondrocytes often accompanies monolayer expansion of chondrocytes in vitro. The global DNA methylation level of chondrocytes is considered to be a suitable biomarker for the loss of the chondrocyte phenotype. However, results based on different experimental methods can be inconsistent. Therefore, it is important to establish a precise, simple, and rapid method to quantify global DNA methylation levels during chondrocyte dedifferentiation. Current genome-wide methylation analysis techniques largely rely on bisulfite genomic sequencing. Due to DNA degradation during bisulfite conversion, these methods typically require a large sample volume. Other methods used to quantify global DNA methylation levels include high-performance liquid chromatography (HPLC). However, HPLC requires complete digestion of genomic DNA. Additionally, the prohibitively high cost of HPLC instruments limits HPLC's wider application. In this study, genomic DNA (gDNA) was extracted from human chondrocytes cultured with varying number of passages. The gDNA methylation level was detected using a methylation-specific dot blot assay. In this dot blot approach, a gDNA mixture containing the methylated DNA to be detected was spotted directly onto an N + membrane as a dot inside a previously drawn circular template pattern. Compared with other gel electrophoresis-based blotting approaches and other complex blotting procedures, the dot blot method saves significant time. In addition, dot blots can detect overall DNA methylation level using a commercially available 5-mC antibody. We found that the DNA methylation level differed between the monolayer subcultures, and therefore could play a key role in chondrocyte dedifferentiation. The 5-mC dot blot is a reliable, simple, and rapid method to detect the general DNA methylation level to evaluate chondrocyte phenotype.

Quantum dot-based western blot for sensitive detection of pig serum antibody to actinobacillus pleuropneumoniae

NASA Astrophysics Data System (ADS)

Cişmileanu, Ana; Sima, Cornelia; Grigoriu, Constantin

2007-08-01

A quantum dot - immunoglobulin conjugate specific for pig IgG, was obtained by carbodiimide chemistry. We used a Western blot technique for detecting specific antibodies against Actinobacillus pleuropneumoniae (A. pp), which cause porcine pleuropneumonia. The antigen used in this technique was Apx haemolysin which is an important virulence factor of A. pp and it induces protective immunity in vaccined pigs. The detection on Western blot membrane was possible at 1/50 dilution of quantum dot conjugate at a dilution of pig serum till 1/6400. The results for pig serum demonstrated a higher sensitivity of QD-based Western blot technique for the presence of antibodies specific for Apx haemolysin in comparison with similar classical techniques (with coloured substrate for enzyme present in secondary antibody conjugate).

Evaluation of two commercial systems for automated processing, reading, and interpretation of Lyme borreliosis Western blots.

PubMed

Binnicker, M J; Jespersen, D J; Harring, J A; Rollins, L O; Bryant, S C; Beito, E M

2008-07-01

The diagnosis of Lyme borreliosis (LB) is commonly made by serologic testing with Western blot (WB) analysis serving as an important supplemental assay. Although specific, the interpretation of WBs for diagnosis of LB (i.e., Lyme WBs) is subjective, with considerable variability in results. In addition, the processing, reading, and interpretation of Lyme WBs are laborious and time-consuming procedures. With the need for rapid processing and more objective interpretation of Lyme WBs, we evaluated the performances of two automated interpretive systems, TrinBlot/BLOTrix (Trinity Biotech, Carlsbad, CA) and BeeBlot/ViraScan (Viramed Biotech AG, Munich, Germany), using 518 serum specimens submitted to our laboratory for Lyme WB analysis. The results of routine testing with visual interpretation were compared to those obtained by BLOTrix analysis of MarBlot immunoglobulin M (IgM) and IgG and by ViraScan analysis of ViraBlot and ViraStripe IgM and IgG assays. BLOTrix analysis demonstrated an agreement of 84.7% for IgM and 87.3% for IgG compared to visual reading and interpretation. ViraScan analysis of the ViraBlot assays demonstrated agreements of 85.7% for IgM and 94.2% for IgG, while ViraScan analysis of the ViraStripe IgM and IgG assays showed agreements of 87.1 and 93.1%, respectively. Testing by the automated systems yielded an average time savings of 64 min/run compared to processing, reading, and interpretation by our current procedure. Our findings demonstrated that automated processing and interpretive systems yield results comparable to those of visual interpretation, while reducing the subjectivity and time required for Lyme WB analysis.

Quantitation of Protein Carbonylation by Dot Blot

PubMed Central

Wehr, Nancy B.; Levine, Rodney L.

2012-01-01

Protein carbonylation is the most commonly used measure of oxidative modification of proteins. It is frequently measured spectrophotometrically or immunochemically by derivatizing proteins with the classical carbonyl reagent, 2,4-dinitrophenylhydrazine. We developed an immunochemical dot blot method for quantitation of protein carbonylation in homogenates or purified proteins. Dimethyl sulfoxide was employed as the solvent because it very efficiently extracts proteins from tissues and keeps them soluble. It also readily dissolves 2,4-dinitrophenylhydrazine and wets PVDF membranes. The detection limit is 0.19 ± 0.04 pmol carbonyl. Sixty ng protein is sufficient to measure protein carbonyl content. This level of sensitivity allowed measurement of protein carbonylation in individual Drosophila. PMID:22326366

Western blotting revisited: critical perusal of underappreciated technical issues.

PubMed

Gorr, Thomas A; Vogel, Johannes

2015-04-01

The most commonly used semiquantitative analysis of protein expression still employs protein separation by denaturing SDS-PAGE with subsequent Western blotting and quantification of the resulting ODs of bands visualized with specific antibodies. However, many questions regarding this procedure are usually ignored, although still in need of answering: Does isolation or separation procedure harm the integrity or affect modifications (e.g., phosphorylation) of the protein of interest? Does denaturation reduce binding of antibodies used for detection? Should denaturation be performed or should a native gel be run? How can artificial degradations or aggregations be distinguished from biological relevant ones? If the antibody detects multiple bands (which is not uncommon), which one(s) should be taken into account for quantification and why? Which loading control protein should be chosen and is it really "housekeeping" and how can this be verified? Is the image acquisition system linear and does it come with a sufficient dynamic range? How to account and control for background staining? This article is intended to address these questions and raise the readers awareness to possible Western blot alternatives in the attempt of minimizing possible pitfalls that might loom anywhere from protein isolation to acquisition of final quantitative data. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Seasonally different response of photosynthetic activity to daytime and night-time warming in the Northern Hemisphere

DOE PAGES

Tan, Jianguang; Piao, Shilong; Chen, Anping; ...

2014-08-27

Over the last century the Northern Hemisphere has experienced rapid climate warming, but this warming has not been evenly distributed seasonally, as well as diurnally. The implications of such seasonal and diurnal heterogeneous warming on regional and global vegetation photosynthetic activity, however, are still poorly understood. Here, we investigated for different seasons how photosynthetic activity of vegetation correlates with changes in seasonal daytime and night-time temperature across the Northern Hemisphere (>30°N), using Normalized Difference Vegetation Index (NDVI) data from 1982 to 2011 obtained from the Advanced Very High Resolution Radiometer (AVHRR). Our analysis revealed some striking seasonal differences in themore » response of NDVI to changes in day- versus night-time temperatures. For instance, while higher daytime temperature (T max) is generally associated with higher NDVI values across the boreal zone, the area exhibiting a statistically significant positive correlation between T max and NDVI is much larger in spring (41% of area in boreal zone – total area 12.6 × 10 6 km 2) than in summer and autumn (14% and 9%, respectively). In contrast to the predominantly positive response of boreal ecosystems to changes in T max, increases in T max tended to negatively influence vegetation growth in temperate dry regions, particularly during summer. Changes in night-time temperature (T min) correlated negatively with autumnal NDVI in most of the Northern Hemisphere, but had a positive effect on spring and summer NDVI in most temperate regions (e.g., Central North America and Central Asia). Such divergent covariance between the photosynthetic activity of Northern Hemispheric vegetation and day- and night-time temperature changes among different seasons and climate zones suggests a changing dominance of ecophysiological processes across time and space. Lastly, understanding the seasonally different responses of vegetation photosynthetic activity to

Immunodiagnosis of Echinococcus Infections: Confirmatory Testing and Species Differentiation by a New Commercial Western Blot

PubMed Central

Liance, Martine; Janin, Veronique; Bresson-Hadni, Solange; Vuitton, Dominique-Angele; Houin, Rene; Piarroux, Renaud

2000-01-01

The Echinococcus Western Blot IgG (LDBIO Diagnostics, Lyon, France), using a whole larval antigen from Echinococcus multilocularis, was evaluated for serodiagnosis and differentiation between two human parasitic infections of worldwide importance: cystic echinococcosis, due to Echinococcus granulosus, and alveolar echinococcosis, due to E. multilocularis. Fifty and 61 serum samples from patients with cystic and alveolar echinococcosis, respectively, were used for assessing diagnostic sensitivity. The sensitivity of the assay was compared with those of screening tests used for these applications. Sera used for assessing cross-reactivities were from 154 patients with other diseases, either parasitic or not. The assay allowed the detection of serum immunoglobulin G antibodies in 97% of Echinococcus-infected patients. It had a higher sensitivity than screening assays for the detection for each echinococcosis. The assay allowed us to correctly distinguish between E. granulosus- and E. multilocularis-infected patients in 76% of cases. It did not allow us to distinguish active from inactive forms of both echinococcoses. The occurrence of cross-reactivities with neurocysticercosis indicates the necessity for retesting sera with species-specific antigens, for rare patients with neurologic disorders. This study shows the usefulness of the commercially available Echinococcus Western Blot IgG for the serological confirmation of human echinococcosis. PMID:11015390

Evidence for enhanced debris-flow activity in the Northern Calcareous Alps since the 1980s (Plansee, Austria)

NASA Astrophysics Data System (ADS)

Dietrich, A.; Krautblatter, M.

2017-06-01

Debris flows are among the most important natural hazards. The Northern Calcareous Alps with their susceptible lithology are especially affected by a double digit number of major hazard events per year. It is hypothesised that debris-flow intensity has increased significantly in the last decades in the Northern Calcareous Alps coincident to increased rainstorm frequencies, but yet there is only limited evidence. The Plansee catchment exposes extreme debris-flow activity due to the intensely jointed Upper Triassic Hauptdolomit lithology, being responsible for most of the debris-flow activity in the Northern Calcareous Alps. The debris flows feed into a closed sediment system, the Plansee Lake, where Holocene/Lateglacial sedimentation rates, rates since the late 1940s and recent rates can be inferred accurately. Using aerial photos and field mapping, the temporal and spatial development of eight active debris-flow fans is reconstructed in six time intervals from 1947, 1952, 1971, 1979, 1987, 2000 and 2010 and mean annual debris-flow volumes are calculated. These are compared with mean Holocene/Lateglacial debris-flow volumes derived from the most prominent cone whose contact with the underlying till is revealed by electrical resistivity tomography (ERT). Debris-flow activity there increased by a factor of 10 from 1947-1952 (0.23 ± 0.07 · 103 m3/yr) to 1987-2000 (2.41 ± 0.66 · 103 m3/yr). Mean post-1980 rates from all eight fans exceed pre-1980 rates by a factor of more than three coinciding with enhanced rainstorm activity recorded at meteorological stations in the Northern Calcareous Alps. The frequency of rain storms (def. 35 mm/d) has increased in the study area on average by 10% per decade and has nearly doubled since 1921. Recent debris-flow activity is also 2-3 times higher than mean Holocene/Lateglacial rates. The strong correlation between the non-vegetated catchment area and the annual debris-flow volume might indicate a decadal positive feedback between

Quantitation of protein carbonylation by dot blot.

PubMed

Wehr, Nancy B; Levine, Rodney L

2012-04-15

Protein carbonylation is the most commonly used measure of oxidative modification of proteins. It is frequently measured spectrophotometrically or immunochemically by derivatizing proteins with the classical carbonyl reagent, 2,4-dinitrophenylhydrazine. We developed an immunochemical dot blot method for quantitation of protein carbonylation in homogenates or purified proteins. Dimethyl sulfoxide was employed as the solvent because it very efficiently extracts proteins from tissues and keeps them soluble. It also readily dissolves 2,4-dinitrophenylhydrazine and wets polyvinylidene difluoride (PVDF) membranes. The detection limit is 0.19 ± 0.04 pmol of carbonyl, and 60 ng of protein is sufficient to measure protein carbonyl content. This level of sensitivity allowed measurement of protein carbonylation in individual Drosophila. Copyright © 2012 Elsevier Inc. All rights reserved.

[Effects of human engineering activities on permafrost active layer and its environment in northern Qinghai-Tibetan plateau].

PubMed

Guo, Zhenggang; Wu, Qingbo; Niu, Fujun

2006-11-01

With disturbed and undisturbed belts during the construction of Qinghai-Tibet highway as test objectives, this paper studied the effects of human engineering activities on the permafrost ecosystem in northern Qinghai-Tibetan plateau. The results showed that the thickness of permafrost active layer was smaller in disturbed than in undisturbed belt, and decreased with increasing altitude in undisturbed belt while no definite pattern was observed in disturbed belt. Different vegetation types had different effects on the thickness of permafrost active layer, being decreased in the order of steppe > shrub > meadow. In the two belts, altitude was the main factor affecting the vertical distribution of soil moisture, but vegetation type was also an important affecting factor if the altitude was similar. Due to the human engineering activities, soil temperature in summer was lower in disturbed than in undisturbed belt.

A Study of Rubisco through Western Blotting and Tissue Printing Techniques

ERIC Educational Resources Information Center

Ma, Zhong; Cooper, Cynthia; Kim, Hyun-Joo; Janick-Buckner, Diane

2009-01-01

We describe a laboratory exercise developed for a cell biology course for second-year undergraduate biology majors. It was designed to introduce undergraduates to the basic molecular biology techniques of Western blotting and immunodetection coupled with the technique of tissue printing in detecting the presence, relative abundance, and…

Selection of a Clostridium perfringens type D epsilon toxin producer via dot-blot test.

PubMed

Gonçalves, Luciana A; Lobato, Zélia I P; Silva, Rodrigo O S; Salvarani, Felipe M; Pires, Prhiscylla S; Assis, Ronnie A; Lobato, Francisco C F

2009-11-01

Clostridium perfringens type D produces enterotoxemia, an enteric disease in ruminants, also known as pulpy kidney disease. Caused by epsilon toxin, enterotoxemia is a major exotoxin produced by this microorganism. Epsilon toxin is also the main component of vaccines against this enteric disorder. In this study, a standardized dot-blot was used to choose strains of C. perfringens type D that are producers of epsilon toxin. Clones producing epsilon toxin were chosen by limiting dilution; after three passages, lethal minimum dose titers were determined by soroneutralization test in mice. These clones produced epsilon toxin 240 times more concentrated than the original strain. The presence of the epsilon toxin gene (etx) was verified by polymerase chain reaction. All clones were positive, including those determined to be negative by dot-blot tests, suggesting that mechanisms in addition to the presence of the etx gene can influence toxin production. The dot-blot test was efficient for the selection of toxigenic colonies of C. perfringens type D and demonstrated that homogeneous populations selected from toxigenic cultures produce higher titers of epsilon toxin.

Development of a nanogold slot blot inhibition assay for the detection of antibodies against bovine herpesvirus type 1.

PubMed

Japolla, Greice; Cunha-Junior, Jair Pereira; Pajuaba, Ana Claudia Arantes Marquez; Taketomi, Ernesto Akio; Bührer-Sékula, Samira; Bataus, Luiz Artur Mendes; de Souza, Guilherme Rocha Lino

2018-06-01

Bovine herpesvirus type 1 (BoHV-1) is recognized as an important pathogen causing respiratory, reproductive, and neurological disorders in cattle and is associated with economic losses to animal industry. Accurate diagnostic methods are needed for prevention of disease transmission. While the virus neutralization test is considered the gold standard method, it requires maintenance of the virus and cell cultures, which is time consuming and expensive. Serological techniques such as enzyme-linked immunosorbent assay (ELISA) are widely applied, as these are easy to perform and provide quick results. In the present study, a nanogold slot blot inhibition assay was developed for the serological diagnosis of BoHV-1 and compared with standard ELISA and horseradish peroxidase (HRP) slot blot assays. Of 42 serum samples tested by ELISA, 32 (76.2%) were positive and 10 (23.8%), were negative. The sensitivity and specificity of the nanogold slot blot inhibition assay was similar to that observed for ELISA and HRP slot blot assays, and a strong correlation was observed between the tests. Thus, the nanogold slot blot inhibition assay may serve as an efficient and rapid alternative to ELISA in settings, where plate-reading equipment is lacking.

Development of EMab-51, a Sensitive and Specific Anti-Epidermal Growth Factor Receptor Monoclonal Antibody in Flow Cytometry, Western Blot, and Immunohistochemistry.

PubMed

Itai, Shunsuke; Kaneko, Mika K; Fujii, Yuki; Yamada, Shinji; Nakamura, Takuro; Yanaka, Miyuki; Saidoh, Noriko; Handa, Saori; Chang, Yao-Wen; Suzuki, Hiroyoshi; Harada, Hiroyuki; Kato, Yukinari

2017-10-01

The epidermal growth factor receptor (EGFR) is a member of the human epidermal growth factor receptor (HER) family of receptor tyrosine kinases and is involved in cell growth and differentiation. EGFR homodimers or heterodimers with other HER members, such as HER2 and HER3, activate downstream signaling cascades in many cancers. In this study, we developed novel anti-EGFR monoclonal antibodies (mAbs) and characterized their efficacy in flow cytometry, Western blot, and immunohistochemical analyses. First, we expressed the full-length or ectodomain of EGFR in LN229 glioblastoma cells and then immunized mice with LN229/EGFR or ectodomain of EGFR, and performed the first screening using enzyme-linked immunosorbent assays. Subsequently, we selected mAbs according to their efficacy in flow cytometry (second screening), Western blot (third screening), and immunohistochemical (fourth screening) analyses. Among 100 mAbs, only one clone EMab-51 (IgG 1 , kappa) reacted with EGFR in Western blot analysis. Finally, immunohistochemical analyses with EMab-51 showed sensitive and specific reactions against oral cancer cells, warranting the use of EMab-51 to detect EGFR in pathological analyses of EGFR-expressing cancers.

Improved high-throughput quantification of luminescent microplate assays using a common Western-blot imaging system.

PubMed

Hawkins, Liam J; Storey, Kenneth B

2017-01-01

Common Western-blot imaging systems have previously been adapted to measure signals from luminescent microplate assays. This can be a cost saving measure as Western-blot imaging systems are common laboratory equipment and could substitute a dedicated luminometer if one is not otherwise available. One previously unrecognized limitation is that the signals captured by the cameras in these systems are not equal for all wells. Signals are dependent on the angle of incidence to the camera, and thus the location of the well on the microplate. Here we show that: •The position of a well on a microplate significantly affects the signal captured by a common Western-blot imaging system from a luminescent assay.•The effect of well position can easily be corrected for.•This method can be applied to commercially available luminescent assays, allowing for high-throughput quantification of a wide range of biological processes and biochemical reactions.

Northern Parkway PTA Makes Health a Habit

ERIC Educational Resources Information Center

Ferdinand, Marilyn

2011-01-01

Health and fitness have been on the agenda of Northern Parkway Elementary School for quite some time, thanks to the concerted efforts of its involved and active PTA officers and members. For the past five years, the Northern Parkway PTA has held a popular and well-attended Family Fun and Fitness Night and has complemented the activities and…

Late Neogene and Active Tectonics along the Northern Margin of the Central Anatolian Plateau,TURKEY

NASA Astrophysics Data System (ADS)

Yildirim, C.; Schildgen, T. F.; Melnick, D.; Echtler, H. P.; Strecker, M. R.

2009-12-01

Margins of orogenic plateaus are conspicuous geomorphic provinces that archive tectonic and climatic variations related to surface uplift. Their growth is associated with spatial and temporal variations of mode and rate of tectonics and surface processes. Those processes can be strongly linked to the evolution of margins and plateaus thorough time. As one of the major morpho-tectonic provinces of Turkey, the Central Pontides (coinciding with the northern margin of the Central Anatolian Plateau (CAP)) display a remarkable topography and present valuable geologic and geomorphic indicators to identify active tectonics. Morpho-tectonic analysis, geological cross-sections, seismic profiles, and geodetic analysis reveal continuous deformation characterized by brittle faults from Late Miocene to recent across the northern margin of the CAP. In the Sinop Peninsula and offshore in the southern Black Sea, pervasive faulting and folding and uplift of Late Miocene to Quaternary marine deposits is related to active margin tectonics of the offshore southern Black Sea thrust and the onshore Balifaki and Erikli faults. In the Kastamonu-Boyabat sedimentary basin, the Late Miocene to Quaternary continental equivalents are strongly deformed by the Ekinveren Fault. This vergent inverse and thrust fault with overstepping en echelon segments deforms not only Quaternary travertines and conglomerates, but also patterns of the Pleistocene to Holocene drainage systems. In the southern Kastamonu-Boyabat basin, an antithetic thrust fault of the Ekinveren Fault system deformed also Quaternary fluviatile terrace deposits. Farther south, a dextral transpressive splay of the North Anatolian Fault (NAF) deforms pediment surfaces and forms the northern flank of the Ilgaz active mountain range. The Ilgaz Range rises up to 2587 m.a.s.l and is delimited by active segments of the NAF.The Central Pontides are located at the apex of northward convex arc of the NAF. Geodetic analysis indicate a deviation

A rapid chemiluminescent slot blot immunoassay for the detection and quantification of Clostridium botulinum neurotoxin type E, in cultures.

PubMed

Cadieux, Brigitte; Blanchfield, Burke; Smith, James P; Austin, John W

2005-05-01

A simple, rapid, cost-effective in vitro slot blot immunoassay was developed for the detection and quantification of botulinum neurotoxin type E (BoNT/E) in cultures. Culture supernatants of 36 strains of clostridia, including 12 strains of Clostridium botulinum type E, 12 strains of other C. botulinum neurotoxin serotypes, and 12 strains of other clostridial species were tested. Samples containing BoNT/E were detected using affinity-purified polyclonal rabbit antisera prepared against BoNT/E with subsequent detection of secondary antibodies using chemiluminescence. All strains of C. botulinum type E tested positive, while all non C. botulinum type E strains tested negative. The sensitivity of the slot blot immunoassay for detection of BoNT/E was approximately four mouse lethal doses (MLD). The intensity of chemiluminescence was directly correlated with the concentration of BoNT/E up to 128 MLD, allowing quantification of BoNT/E between 4 and 128 MLD. The slot blot immunoassay was compared to the mouse bioassay for detection of BoNT/E using cultures derived from fish samples inoculated with C. botulinum type E, and cultures derived from naturally contaminated environmental samples. A total of 120 primary enrichment cultures derived from fish samples, of which 103 were inoculated with C. botulinum type E, and 17 were uninoculated controls, were assayed. Of the 103 primary enrichment cultures derived from inoculated fish samples, all were positive by mouse bioassay, while 94 were also positive by slot blot immunoassay, resulting in a 7.5% false-negative rate. All 17 primary enrichment cultures derived from the uninoculated fish samples were negative by both mouse bioassay and slot blot immunoassay. A total of twenty-six primary enrichment cultures derived from environmental samples were tested by mouse bioassay and slot blot immunoassay. Of 13 primary enrichment cultures positive by mouse bioassay, 12 were also positive by slot blot immunoassay, resulting in a 3

Climate modulates internal wave activity in the Northern South China Sea

NASA Astrophysics Data System (ADS)

DeCarlo, Thomas M.; Karnauskas, Kristopher B.; Davis, Kristen A.; Wong, George T. F.

2015-02-01

Internal waves (IWs) generated in the Luzon Strait propagate into the Northern South China Sea (NSCS), enhancing biological productivity and affecting coral reefs by modulating nutrient concentrations and temperature. Here we use a state-of-the-art ocean data assimilation system to reconstruct water column stratification in the Luzon Strait as a proxy for IW activity in the NSCS and diagnose mechanisms for its variability. Interannual variability of stratification is driven by intrusions of the Kuroshio Current into the Luzon Strait and freshwater fluxes associated with the El Niño-Southern Oscillation. Warming in the upper 100 m of the ocean caused a trend of increasing IW activity since 1900, consistent with global climate model experiments that show stratification in the Luzon Strait increases in response to radiative forcing. IW activity is expected to increase in the NSCS through the 21st century, with implications for mitigating climate change impacts on coastal ecosystems.

Past Activity of Non-sorted Circles Fields in Northern Sweden

NASA Astrophysics Data System (ADS)

Becher, M.; Klaminder, J.

2011-12-01

Non-sorted circles (NSCs), also known as frost boils, are common geomorphological features created by cryogenic processes in subarctic and arctic soils [Washburn, 1979]. Near-surface permafrost is thought to be a prerequisite for the activity of NSCs [Walker et al., 2008], where an active NSC maintains a sparsely vegetated circle-like zone in the centre due to frost heave and up-freezing of silt. Little is known about the historical activity of NSCs in northern Scandinavia. Here we summarize some results of our ongoing research where we have assessed historical changes in NSC activity in the Abisko area, northern Sweden. In short, we have estimated how the distribution of NSCs along an altitude gradient has changed from 1959 to 2008 by using digitized aerial photos. Unsupervised classification with two classes (bare mineral soil and shrub vegetation) was performed on NSC fields to achieve estimations on how the aerial coverage of up-frozen mineral soil has changed over the last decades. Here, over growth of previous bare mineral soil surfaces by shrubs was interpreted as decreased NSC activity, considering that vascular plants are unable to colonize active NSCs due to significant heave and disruption of plant roots [Jonasson, 1986]. In addition to observations from aerial photos, we have conducted vertical sampling of NSC soil stratigraphies and 14C-dated buried organic soil layers to constrain the historical activity of the NSC in time. Preliminary analyses of the aerial photos indicate a general overgrowth of bare mineral surfaces within the NSCs since 1959. Of 137 studied sites 92 sites (corresponding to 67%) show an net overgrowth of previous bare mineral soil surface within the circles. On average, about 29 % of the bare mineral soil within the NSC fields is estimated to have been colonized by shrub vegetation. Clearly, our findings indicate that permafrost-controlled soil frost activities of the studied NSCs have mainly decreased during the last five decades

Ferulic acid enhances IgE binding to peanut allergens in western blots.

USDA-ARS?s Scientific Manuscript database

Phenolic compounds at high concentrations are known to form insoluble complexes with proteins. We hypothesized that this complex formation could interfere with Western blot and ELISA assays for peanut allergens. To verify this, three simple phenolic compounds (ferulic, caffeic, and chlorogenic acids...

COMPARISONS OF ELISA AND WESTERN BLOT ASSAYS FOR DETECTION OF CRYPTOSPORIDIUM ANTIBODY

EPA Science Inventory

A seroprevalence survey was conducted using ELISA and Western blot (WB) assays for antibody to three Cryptosporidium antigens on 380 blood donors in Jackson County, Oregon. The purpose was to determine if either assay could detect serological evidence of an outbreak which occurre...

Winter climate change affects growing-season soil microbial biomass and activity in northern hardwood forests

Treesearch

Jorge Durán; Jennifer L. Morse; Peter M. Groffman; John L. Campbell; Lynn M. Christenson; Charles T. Driscoll; Timothy J. Fahey; Melany C. Fisk; Myron J. Mitchell; Pamela H. Templer

2014-01-01

Understanding the responses of terrestrial ecosystems to global change remains a major challenge of ecological research. We exploited a natural elevation gradient in a northern hardwood forest to determine how reductions in snow accumulation, expected with climate change, directly affect dynamics of soil winter frost, and indirectly soil microbial biomass and activity...

Single-Cell Western Blotting after Whole-Cell Imaging to Assess Cancer Chemotherapeutic Response

PubMed Central

2015-01-01

Intratumor heterogeneity remains a major obstacle to effective cancer therapy and personalized medicine. Current understanding points to differential therapeutic response among subpopulations of tumor cells as a key challenge to successful treatment. To advance our understanding of how this heterogeneity is reflected in cell-to-cell variations in chemosensitivity and expression of drug-resistance proteins, we optimize and apply a new targeted proteomics modality, single-cell western blotting (scWestern), to a human glioblastoma cell line. To acquire both phenotypic and proteomic data on the same, single glioblastoma cells, we integrate high-content imaging prior to the scWestern assays. The scWestern technique supports thousands of concurrent single-cell western blots, with each assay comprised of chemical lysis of single cells seated in microwells, protein electrophoresis from those microwells into a supporting polyacrylamide (PA) gel layer, and in-gel antibody probing. We systematically optimize chemical lysis and subsequent polyacrylamide gel electrophoresis (PAGE) of the single-cell lysate. The scWestern slides are stored for months then reprobed, thus allowing archiving and later analysis as relevant to sparingly limited, longitudinal cell specimens. Imaging and scWestern analysis of single glioblastoma cells dosed with the chemotherapeutic daunomycin showed both apoptotic (cleaved caspase 8- and annexin V-positive) and living cells. Intriguingly, living glioblastoma subpopulations show up-regulation of a multidrug resistant protein, P-glycoprotein (P-gp), suggesting an active drug efflux pump as a potential mechanism of drug resistance. Accordingly, linking of phenotype with targeted protein analysis with single-cell resolution may advance our understanding of drug response in inherently heterogeneous cell populations, such as those anticipated in tumors. PMID:25226230

Long-term active-layer dynamics: results of 22 years of field observations in Northern Hemisphere permafrost regions.

NASA Astrophysics Data System (ADS)

Shiklomanov, N. I.; Nelson, F. E.; Streletskiy, D. A.; Klene, A. E.; Biskaborn, B. K.

2016-12-01

The uppermost layer of seasonal thawing above permafrost (the active layer) is an important regulator of energy and mass fluxes between the surface and the atmosphere in the polar regions. Active layer monitoring is an important component of efforts to assess the effects of global change in permafrost environments. The Circumpolar Active Layer Monitoring (CALM) program, established in the early 1990s, is designed to observe temporal and spatial variability of the active layer and its response to changes and variations in climatic conditions. The CALM network is an integral part of the Global Terrestrial Network for Permafrost (GTN-P), operating under the auspices of the Global Terrestrial Observing System (GTOS) /Global Climate Observing System (GCOS). Standardized thaw depth observations in the Northern Hemisphere are available for more than 200 GTN-P/CALM sites in the Northern Hemisphere. At each of the sites spatially distributed ALT measurements have been conducted annually by mechanical probing. The locations of sites represent generalized surface and subsurface conditions characteristic of broader regions. The data are assimilated and distributed though the CALM (www.gwu.edu/ calm) and GTN-P (gtnpdatabase.org) online databases. In this presentation we use data from approximately 20 years of continuous observations to examine temporal trends in active-layer thickness for several representative Arctic regions. Results indicate substantial interannual fluctuations in active-layer thickness, primarily in response to variations in air temperature. Decadal trends in ALT vary by region. A progressive increase in ALT has been observed in the Nordic countries, the Russian European North, West Siberia, East Siberia, the Russian Far East, and the Interior of Alaska. North American Arctic sites show no apparent thaw depth trend over 22-years of record. However, combined active layer, ground temperature and heave/subsidence observations conducted in northern Alaska

Recent and active tectonics of the external zone of the Northern Apennines (Italy)

NASA Astrophysics Data System (ADS)

Boccaletti, Mario; Corti, Giacomo; Martelli, Luca

2011-08-01

We present a comprehensive study of the recent and active tectonics of the external part of the Northern Apennines (Italy) by using morphotectonic, geological-structural, and stratigraphic analysis, compared with the current seismicity of the region. This analysis suggests that the external part of the Northern Apennines is characterised by presence of three major systems of Quaternary compressive structures corresponding to (1) the Apenninic watershed, (2) the Apennines-Po Plain margin (pede-Apenninic thrust front), and (3) the Emilia, Ferrara, and Adriatic Fold systems buried below the Po Plain. Geological data and interpreted seismic sections indicate a roughly N-S Quaternary deformation direction, with rates <2.5 mm/year. The shortening decreased since the Pliocene, when our data indicate compression in a NNW-SSE direction and rates up to 7 mm/year. The trend and kinematics of the structures affecting the Apennines-Po Plain margin and the Po Plain subsoil fit well the pattern of the current seismicity of the area, as well as recent GPS and geodetic levelling data, pointing to a current activity of these thrust systems controlled by an overall compressive stress field. Close to the Apenninic watershed, earthquake focal mechanisms indicate that shallow extension is associated to deep compression. The extensional events may be related to a secondary extensional stress field developing on the hangingwall of the thrust system affecting the Apenninic watershed; alternatively, this thrust system may have been recently deactivated and overprinted by active normal faulting. Deeper compressive events are related to the activity of both a major basement thrust that connects at surface with the pede-Apenninic thrust front and a major Moho structure.

Ferulic acid enhances IgE binding to peanut allergens in western blots.

USDA-ARS?s Scientific Manuscript database

Because phenolic compounds can precipitate or complex with proteins, we postulated that interactions of phenolics with IgE antibodies help enhance IgE binding to peanut allergens in Western blots. Three different phenolics, such as, ferulic, caffeic and chlorogenic acids were examined. Each was mixe...

A Newly Revised Master's Degree in Physical Education and Physical Activity Leadership at the University of Northern Colorado

ERIC Educational Resources Information Center

Dauenhauer, Brian; Krause, Jennifer; Douglas, Scott; Smith, Mark; Stellino, Megan Babkes

2017-01-01

In response to calls on physical education teacher education (PETE) programs to better prepare teachers for a broadened role in school-based physical activity promotion, the University of Northern Colorado has recently established a Master of Arts in teaching physical education and physical activity leadership (MAT PE-PAL) degree. The…

Platelet-activating factor mediates monocyte chemoattractant protein-1 expression in glomerular immune injury.

PubMed

Jocks, T; Freudenberg, J; Zahner, G; Stahl, R A

1998-01-01

These studies were designed to determine the possible role of platelet-activating factor (PAF) in the production of monocyte chemoattractant protein-1 (MCP-1) in glomerular immune injury. The glomerular lesion was induced in isolated perfused rat kidneys by a rabbit anti-rat-thymocyte serum (ATS) and rat serum (RS) as a complement source. Perfusion of kidneys with ATS and RS results in the selective binding of the antiserum to the glomerular mesangium with consecutive intraglomerular activation of complement. Antibody binding and complement activation induced a significant increase in glomerular MCP-1 mRNA levels when assessed by Northern blotting or RT-PCR. Decomplemented RS or non antibody rabbit IgG had only moderate effects on glomerular MCP-1 mRNA levels. The PAF receptor antagonist WEB 2170 almost completely blocked the ATS and RS induced MCP-1 mRNA levels. Perfusion of control kidneys with PAF increased MCP-1 mRNA expression, an effect which was blocked by WEB 2170. Glomerular MCP-1 protein formation, assessed by Western blotting, was stimulated following ATS and RS and PAF, respectively, was blocked by WEB 2170. These data show that PAF, derived from glomerular resident cells following antibody and complement induced injury, stimulates MCP-1 expression. In addition to the direct effects on leukocyte adhesion and activation PAF may mediate inflammatory cell influx in glomerular injuries due to the release of MCP-1.

Serological differentiation of murine typhus and epidemic typhus using cross-adsorption and Western blotting.

PubMed

La Scola, B; Rydkina, L; Ndihokubwayo, J B; Vene, S; Raoult, D

2000-07-01

Differentiation of murine typhus due to Rickettsia typhi and epidemic typhus due to Rickettsia prowazekii is critical epidemiologically but difficult serologically. Using serological, epidemiological, and clinical criteria, we selected sera from 264 patients with epidemic typhus and from 44 patients with murine typhus among the 29,188 tested sera in our bank. These sera cross-reacted extensively in indirect fluorescent antibody assays (IFAs) against R. typhi and R. prowazekii, as 42% of the sera from patients with epidemic typhus and 34% of the sera from patients with murine typhus exhibited immunoglobulin M (IgM) and/or IgG titers against the homologous antigen (R. prowazekii and R. typhi, respectively) that were more than one dilution higher than those against the heterologous antigen. Serum cross-adsorption studies and Western blotting were performed on sera from 12 selected patients, 5 with murine typhus, 5 with epidemic typhus, and 2 suffering from typhus of undetermined etiology. Differences in IFA titers against R. typhi and R. prowazekii allowed the identification of the etiological agent in 8 of 12 patients. Western blot studies enabled the identification of the etiological agent in six patients. When the results of IFA and Western blot studies were considered in combination, identification of the etiological agent was possible for 10 of 12 patients. Serum cross-adsorption studies enabled the differentiation of the etiological agent in all patients. Our study indicates that when used together, Western blotting and IFA are useful serological tools to differentiate between R. prowazekii and R. typhi exposures. While a cross-adsorption study is the definitive technique to differentiate between infections with these agents, it was necessary in only 2 of 12 cases (16.7%), and the high costs of such a study limit its use.

Serological Differentiation of Murine Typhus and Epidemic Typhus Using Cross-Adsorption and Western Blotting

PubMed Central

La Scola, Bernard; Rydkina, Lena; Ndihokubwayo, Jean-Bosco; Vene, Sirkka; Raoult, Didier

2000-01-01

Differentiation of murine typhus due to Rickettsia typhi and epidemic typhus due to Rickettsia prowazekii is critical epidemiologically but difficult serologically. Using serological, epidemiological, and clinical criteria, we selected sera from 264 patients with epidemic typhus and from 44 patients with murine typhus among the 29,188 tested sera in our bank. These sera cross-reacted extensively in indirect fluorescent antibody assays (IFAs) against R. typhi and R. prowazekii, as 42% of the sera from patients with epidemic typhus and 34% of the sera from patients with murine typhus exhibited immunoglobulin M (IgM) and/or IgG titers against the homologous antigen (R. prowazekii and R. typhi, respectively) that were more than one dilution higher than those against the heterologous antigen. Serum cross-adsorption studies and Western blotting were performed on sera from 12 selected patients, 5 with murine typhus, 5 with epidemic typhus, and 2 suffering from typhus of undetermined etiology. Differences in IFA titers against R. typhi and R. prowazekii allowed the identification of the etiological agent in 8 of 12 patients. Western blot studies enabled the identification of the etiological agent in six patients. When the results of IFA and Western blot studies were considered in combination, identification of the etiological agent was possible for 10 of 12 patients. Serum cross-adsorption studies enabled the differentiation of the etiological agent in all patients. Our study indicates that when used together, Western blotting and IFA are useful serological tools to differentiate between R. prowazekii and R. typhi exposures. While a cross-adsorption study is the definitive technique to differentiate between infections with these agents, it was necessary in only 2 of 12 cases (16.7%), and the high costs of such a study limit its use. PMID:10882661

From the Northern Eurasia Earth Science Partnership Initiative to the Northern Eurasia Future Initiative

NASA Astrophysics Data System (ADS)

Streletskiy, D. A.; Groisman, P. Y.; Shugart, H. H., Jr.; Gulev, S.; Maksyutov, S. S.; Qi, J.

2017-12-01

Since 2004, the Northern Eurasia Earth Science Partnership Initiative (NEESPI) - an interdisciplinary program of internationally-supported Earth systems and science research - has addressed large-scale and long-term manifestations of climate and environmental changes over Northern Eurasia and their impact on the Global Earth system. With 40 books and more than 1500 peer-reviewed journal publications to its credit, NEESPI's output can now be used to directly support decision-making for societal needs. Specifically, it was decided to shift gradually the foci of regional studies in Northern Eurasia towards applications with the following major Science Question: "What dynamic and interactive change(s) will affect societal well-being, activities, and health, and what might be the mitigation and adaptation strategies that could support sustainable development and decision-making activities in Northern Eurasia?" To answer this question requires a stronger socio-economic component in the ongoing and future regional studies focused on sustainable societal development under changing climatic and environmental conditions. The NEESPI Research Team has reorganized itself into "Northern Eurasia Future Initiative" (NEFI) and developed a new Science Plan released in June 2016. The Plan underwent a 6-month-long public review and was finalized at the end of 2016. Its description was thereafter split between two review papers: Groisman et al. (2017) and Monier et al. (2017). The first paper describes the Plan rationale and a new set of topical questions. The second paper describes a major modeling approach that will be employed in addressing the "what to do" questions of the NEFI Research (cf., presentation by Monier et al. at this Session). In the current presentation, we outline the new NEFI research foci and present latest NEFI findings including international projects in the Eurasian Arctic, boreal zone, and the Dry Land Belt of Northern Eurasia (cf., also presentations at sister

Differential Proteomic Analysis of Noncardia Gastric Cancer from Individuals of Northern Brazil

PubMed Central

Leal, Mariana Ferreira; Chung, Janete; Calcagno, Danielle Queiroz; Assumpção, Paulo Pimentel; Demachki, Samia; da Silva, Ismael Dale Cotrim Guerreiro; Chammas, Roger; Burbano, Rommel Rodríguez; de Arruda Cardoso Smith, Marília

2012-01-01

Gastric cancer is the second leading cause of cancer-related death worldwide. The identification of new cancer biomarkers is necessary to reduce the mortality rates through the development of new screening assays and early diagnosis, as well as new target therapies. In this study, we performed a proteomic analysis of noncardia gastric neoplasias of individuals from Northern Brazil. The proteins were analyzed by two-dimensional electrophoresis and mass spectrometry. For the identification of differentially expressed proteins, we used statistical tests with bootstrapping resampling to control the type I error in the multiple comparison analyses. We identified 111 proteins involved in gastric carcinogenesis. The computational analysis revealed several proteins involved in the energy production processes and reinforced the Warburg effect in gastric cancer. ENO1 and HSPB1 expression were further evaluated. ENO1 was selected due to its role in aerobic glycolysis that may contribute to the Warburg effect. Although we observed two up-regulated spots of ENO1 in the proteomic analysis, the mean expression of ENO1 was reduced in gastric tumors by western blot. However, mean ENO1 expression seems to increase in more invasive tumors. This lack of correlation between proteomic and western blot analyses may be due to the presence of other ENO1 spots that present a slightly reduced expression, but with a high impact in the mean protein expression. In neoplasias, HSPB1 is induced by cellular stress to protect cells against apoptosis. In the present study, HSPB1 presented an elevated protein and mRNA expression in a subset of gastric cancer samples. However, no association was observed between HSPB1 expression and clinicopathological characteristics. Here, we identified several possible biomarkers of gastric cancer in individuals from Northern Brazil. These biomarkers may be useful for the assessment of prognosis and stratification for therapy if validated in larger clinical study

Quasisecular cyclicity in the climate of the Earth's Northern Hemisphere and its possible relation to solar activity variations

NASA Astrophysics Data System (ADS)

Ogurtsov, M. G.; Jungner, H.; Lindholm, M.; Helama, S.; Dergachev, V. A.

2009-12-01

Paleoclimatological reconstructions of temperature of the Earth’s Northern Hemisphere for the last thousand years have been studied using the up-to-date methods of statistical analysis. It has bee indicated that the quasisecular (a period of 60-130 years) cyclicity, which is observed in the climate of the Earth’s Northern Hemisphere, has a bimodal structure, i.e., being composed of the 60-85 and 85-130 year periodicities. The possible relation of the quasisecular climatic rhythm to the corresponding Gleissberg solar cycle has been studied using the solar activity reconstructions performed with the help of the solar paleoastrophysics methods.

Trends in the Northern-hemisphere Climatologies of Local Wave Activity and Fluxes in a Warming Climate

NASA Astrophysics Data System (ADS)

Huang, S. Y.; Nakamura, N.

2016-12-01

The finite-amplitude local wave activity (LWA) identifies both the locations and magnitudes of anomalous wave events (Huang and Nakamura 2016, JAS), which are often associated with extreme weather conditions such as heat waves and storms at the rim. Variance in LWA in synoptic timescale is well-explained by the wave activity flux variance (i.e. conservative dynamics), while beyond seasonal time scale, the convergence/divergence of wave activity flux is balanced by non-conservative processes (e.g. vertical fluxes of heat and momentum at the surface, mixing, radiative forcing etc.). Analysis of ERA-Interim data during 1979-2015 shows that there is generally an increasing trend in the vertically-integrated interior LWA in Northern Winter, except over Central Pacific and Southern Europe. There is, in contrast, a decreasing trend in LWA in Northern summer, except over the high-latitude oceanic regions and low-latitude continental regions. The trends in the wave activity flux convergence in both seasons are consistent with such observations in LWA except over the Atlantic sector. In this presentation, I will illustrate how the change in circulation in a warming climate is associated with change in spatial distribution and frequency of extreme weather events by comparing the change in wave activity flux vectors with the observed change in LWA climatology. I will also quantify the permanent effect of non-conservative processes in terms of decadal change in eddy-free reference states of zonal wind and temperature (Nakamura and Solomon 2011).

Role of Human DNA Polymerase and its Accessory Proteins in Breast Cancer.

DTIC Science & Technology

1999-09-01

by W estern blotting. Total mRNA was isolated from the Ac.in mRNA cells using RNA-STAT 60 (Tel- Test .t .... Inc) and subjected to Northern blotting...p53 expression on the activity of the POLDI promoter were tested using the 1.8 kb-luciferase POLD1 promoter construct in SAOS-2 cells which do not...activity. In preliminary studies using gel mobility shift assays we tested ds oligonucleotides corresponding to all five sites (P1-P5). The results

Checking transfer efficiency and equal loading via qualitative optical way in western blotting.

PubMed

Gong, Jun-Hua; Gong, Jian-Ping; Zheng, Kai-Wen

2017-11-01

The ability to determine that successful transfer and equal loading occur prior to using primary antibodies is important. And total protein staining is commonly used to check transfer efficiency and normalization, which play a crucial role in western blotting. Ponceau S and coomassie blue are commonly used, but there are disadvantages reported in recent years. Therefore, we are interested in finding another method, which is cheap, easy and fast. As we know, protein binding region of PVDF membrane is still hydrophilic when carbinol volatilizes, however, the non-protein binding region of PVDF membrane became hydrophobic again. And this different wettability between non-protein binding region and protein binding region of Polyvinylidene difluoride membrane may be used to check transfer efficiency and equal loading in western blotting. Based on the principle above, we describe an optical approach where an experimenter can observe that the proteins have been transferred to the membrane without any staining within minutes. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Use of a sensitive EnVision +-based detection system for Western blotting: avoidance of streptavidin binding to endogenous biotin and biotin-containing proteins in kidney and other tissues.

PubMed

Banks, Rosamonde E; Craven, Rachel A; Harnden, Patricia A; Selby, Peter J

2003-04-01

Western blotting remains a central technique in confirming identities of proteins, their quantitation and analysis of various isoforms. The biotin-avidin/streptavidin system is often used as an amplification step to increase sensitivity but in some tissues such as kidney, "nonspecific" interactions may be a problem due to high levels of endogenous biotin-containing proteins. The EnVision system, developed for immunohistochemical applications, relies on binding of a polymeric conjugate consisting of up to 100 peroxidase molecules and 20 secondary antibody molecules linked directly to an activated dextran backbone, to the primary antibody. This study demonstrates that it is also a viable and sensitive alternative detection system in Western blotting applications.

The Impact of the School-Based Psychosocial Structured Activities (PSSA) Program on Conflict-Affected Children in Northern Uganda

ERIC Educational Resources Information Center

Ager, Alastair; Akesson, Bree; Stark, Lindsay; Flouri, Eirini; Okot, Braxton; McCollister, Faith; Boothby, Neil

2011-01-01

Background: Children in northern Uganda have undergone significant psychosocial stress during the region's lengthy conflict. A Psychosocial Structured Activities (PSSA) program was implemented in 21 schools identified as amongst those most severely affected by conflict-induced displacement across Gulu and Amuru Districts. The PSSA intervention…

Major off-axis hydrothermal activity on the northern Gorda Ridge

USGS Publications Warehouse

Rona, Peter A.; Denlinger, Roger P.; Fisk, M. R.; Howard, K. J.; Taghon, G. L.; Klitgord, Kim D.; McClain, James S.; McMurray, G. R.; Wiltshire, J. C.

1990-01-01

The first hydrothermal field on the northern Gorda Ridge, the Sea Cliff hydrothermal field, was discovered and geologic controls of hydrothermal activity in the rift valley were investigated on a dive series using the DSV Sea Cliff. The Sea Cliff hydrothermal field was discovered where predicted at the intersection of axis-oblique and axis-parallel faults at the south end of a linear ridge at mid-depth (2700 m) on the east wall. Preliminary mapping and sampling of the field reveal: a setting nested on nearly sediment-free fault blocks 300 m above the rift valley floor 2.6 km from the axis; a spectrum of venting types from seeps to black smokers; high conductive heat flow estimated to be equivalent to the convective flux of multiple black smokers through areas of the sea floor sealed by a caprock of elastic breccia primarily derived from basalt with siliceous cement and barite pore fillings; and a vent biota with Juan de Fuca Ridge affinites. These findings demonstrate the importance of off-axis hydrothermal activity and the role of the intersection of tectonic lineations in controlling hydrothermal sites at sea-floor spreading centers.

Topographic expression of active faults in the foothills of the Northern Apennines

NASA Astrophysics Data System (ADS)

Picotti, Vincenzo; Ponza, Alessio; Pazzaglia, Frank J.

2009-09-01

Active faults that rupture the earth's surface leave an imprint on the topography that is recognized using a combination of geomorphic and geologic metrics including triangular facets, the shape of mountain fronts, the drainage network, and incised river valleys with inset terraces. We document the presence of a network of active, high-angle extensional faults, collectively embedded in the actively shortening mountain front of the Northern Apennines, that possess unique geomorphic expressions. We measure the strain rate for these structures and find that they have a constant throw-to-length ratio. We demonstrate the necessary and sufficient conditions for triangular facet development in the footwalls of these faults and argue that rock-type exerts the strongest control. The slip rates of these faults range from 0.1 to 0.3 mm/yr, which is similar to the average rate of river incision and mountain front unroofing determined by corollary studies. The faults are a near-surface manifestation of deeper crustal processes that are actively uplifting rocks and growing topography at a rate commensurate with surface processes that are eroding the mountain front to base level.

Seasonally asymmetric enhancement of northern vegetation productivity

NASA Astrophysics Data System (ADS)

Park, T.; Myneni, R.

2017-12-01

Multiple evidences of widespread greening and increasing terrestrial carbon uptake have been documented. In particular, enhanced gross productivity of northern vegetation has been a critical role leading to observed carbon uptake trend. However, seasonal photosynthetic activity and its contribution to observed annual carbon uptake trend and interannual variability are not well understood. Here, we introduce a multiple-source of datasets including ground, atmospheric and satellite observations, and multiple process-based global vegetation models to understand how seasonal variation of land surface vegetation controls a large-scale carbon exchange. Our analysis clearly shows a seasonally asymmetric enhancement of northern vegetation productivity in growing season during last decades. Particularly, increasing gross productivity in late spring and early summer is obvious and dominant driver explaining observed trend and variability. We observe more asymmetric productivity enhancement in warmer region and this spatially varying asymmetricity in northern vegetation are likely explained by canopy development rate, thermal and light availability. These results imply that continued warming may facilitate amplifying asymmetric vegetation activity and cause these trends to become more pervasive, in turn warming induced regime shift in northern land.

Logging truck noise near nesting northern goshawks

Treesearch

Teryl G. Grubb; Larry L. Pater; David K. Delaney

1998-01-01

We measured noise levels of four logging trucks as the trucks passed within approximately 500 m of two active northern goshawk (Accipiter gentilis) nests on the Kaibab Plateau in northern Arizona in 1997. Neither a brooding adult female nor a lone juvenile exhibited any discernable behavioral response to logging truck noise, which peaked at 53.4 and...

Local increase of anticyclonic wave activity over northern Eurasia under amplified Arctic warming: WAVE ACTIVITY RESPONSE TO ARCTIC MELTING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xue, Daokai; Lu, Jian; Sun, Lantao

In an attempt to resolve the controversy as to whether Arctic sea ice loss leads to more mid-latitude extremes, a metric of finite-amplitude wave activity is adopted to quantify the midlatitude wave activity and its change during the observed period of the drastic Arctic sea ice decline in both ERA Interim reanalysis data and a set of AMIP-type of atmospheric model experiments. Neither the experiment with the trend in the SST or that with the declining trend of Arctic sea ice can simulate the sizable midlatitude-wide reduction in the total wave activity (Ae) observed in the reanalysis, leaving its explanationmore » to the atmospheric internal variability. On the other hand, both the diagnostics of the flux of the local wave activity and the model experiments lend evidence to a possible linkage between the sea ice loss near the Barents and Kara seas and the increasing trend of anticyclonic local wave activity over the northern part of the central Eurasia and the associated impacts on the frequency of temperature extremes.« less

Glycosaminoglycan blotting on nitrocellulose membranes treated with cetylpyridinium chloride after agarose-gel electrophoretic separation.

PubMed

Maccari, Francesca; Volpi, Nicola

2002-09-01

We describe a method for blotting and immobilizing several nonsulfated and sulfated complex polysaccharides on membranes made hydrophilic and positively charged by a cationic detergent after their separation by conventional agarose gel electrophoresis. Nitrocellulose membranes were derivatized with the cationic detergent cetylpyridinium chloride (CPC) and mixtures of glycosaminoglycans (GAGs) were capillary-blotted after their separation in agarose gel electrophoresis in barium acetate/1,2-diaminopropane. Single purified species of variously sulfated polysaccharides were transferred onto the derivatized membranes after electrophoresis with an efficiency of 100% and stained with alcian blue (irreversible staining) and toluidine blue (reversible staining) permitting about 0.1 nug threshold of detection. Nonsulfated polyanions, hyaluronic acid, a fructose-containing polysaccharide with a chondroitin backbone purified from Escherichia coli U1-41, and its defructosylated product, were also electrophoretically separated and transferred onto membranes. The limit of detection for desulfated GAGs was about 0.1-0.5 nug after irreversible or reversible staining. GAG extracts from bovine, lung and aorta, and human aorta and urine were separated by agarose gel electrophoresis and blotted on CPC-treated nitrocellulose membranes. The polysaccharide composition of these extracts was determined. The membrane stained with toluidine blue (reversible staining) was destained and the same lanes used for immunological detection or other applications. Reversible staining was also applied to recover single species of polysaccharides after electrophoretic separation of mixtures of GAGs and their transfer onto membranes. Single bands were released from the membrane with an efficiency of 70-100% for further biochemical characterization.

Northern forest lands: resident attitudes and resource use

Treesearch

Herbert E. Echelberger; Albert E. Luloff; Frederick E. Schmidt; Frederick E. Schmidt

1991-01-01

Describes socioeconomic characteristics of residents of northern New Hampshire and northeastern Vermont; their level of participation in outdoor recreational activities; perceptions of community problems; and attitudes concerning local versus regional planning, public ownership of northern forest lands, and other pertinent issues with respect to changes in patterns of...

Interaction of murine intestinal mast cell proteinase with inhibitors (serpins) in blood; analysis by SDS-PAGE and western blotting.

PubMed Central

Irvine, J; Newlands, G F; Huntley, J F; Miller, H R

1990-01-01

The interaction of mouse intestinal mast cell proteinase (IMCP) with serine proteinase inhibitors (serpins) in blood was analysed: (i) by examining the capacity of the inhibitors in blood to block the binding of the irreversible serine esterase inhibitor [3H]diisopropyl fluorophosphate (DFP); (ii) by Western blotting. The binding of [3H]DFP to IMCP was blocked very rapidly by inhibitors in mouse serum and, by Western blotting, this inhibition was associated with the appearance of a 73,000 MW proteinase/inhibitor complex together with a series of higher (greater than 100,000) MW complexes. IMCP was not dissociated from these complexes when electrophoresed under reducing conditions, although prior heat treatment of mouse serum (60 for 30-160 min) abolished the formation of all proteinase/inhibitor complexes. Similarly, the activity of a 48,000 MW inhibitor of chymotrypsin was abolished by heat treatment. A titration experiment established that between 0.5 and 5 mg IMCP were inhibited per ml of serum. The properties and MW of the IMCP inhibitor complexes are typical of serpins and suggest that IMCP secreted during intestinal immunological reactions would be rapidly and irreversibly inactivated by plasma-derived inhibitors. Images Figure 1 Figure 2 Figure 3 Figure 4 Figure 5 Figure 6 PMID:2312150

Comparative evaluation of western blotting in hepatic and pulmonary cystic echinococcosis.

PubMed

Akisu, C; Delibas, S B; Bicmen, C; Ozkoc, S; Aksoy, U; Turgay, N

2006-12-01

Many serological tests are widely used in the diagnosis of cystic echinococcosis (CE), caused by the larval stages of Echinococcus granulosus. The present study was carried for differentiation between hepatic and pulmonary cystic echinococcosis by Western Blotting (WB). A total of 121 sera from patients with hepatic CE (37), pulmonary CE (31) and controls (53; consisting of six healthy, seven Hymenolepis nana infection, 20 hepatic and 20 pulmonary diseases other than CE) were examined. In all of the CE patients, E. gronulosus infection was confirmed by surgical intervention. Sera were previously tested using IHA and ELISA to detect the E. gronulosus specific antibodies. Sera from hepatic cases of CE reacted with 16 polypeptides of 6-116 kDa and sera from pulmonary cases of CE reacted with 14 polypeptides of 4-130 kDa by Western Blotting. The WB test enabled the detection of antibodies in the hepatic CE samples for proteins of 24, 32 34, 44-46 and 52-54 kDa in molecular weight in 78.4%, 75.7%, 78.4% and 89.2% of the patients, respectively. In the pulmonary CE samples sera WB test enabled the detection of antibodies 24, 44-46, 100, 110, 116 and 120 124 kDa in molecular weight in 81.3%, 75.0%, 87.5%, 71.9%, 84.4% and 65.6% of the patients, respectively. We indicated that the antigenic components of high molecular weight can be good candidates for differentiation of hepatic CE from pulmonary CE.

Northern hemisphere dust storms on Mars

NASA Technical Reports Server (NTRS)

James, P. B.

1993-01-01

Dust storms in the northern hemisphere of Mars appear to be less common than the more familiar southern hemisphere storms, and essentially, no activity north of about 30 latittude has been documented. The data are, however, subject to an observational bias because Mars is near aphelion during oppositions, which occur during the most likely seasons for dust activity in the north. The amount of dust activity in the northern hemisphere is clearly very relevant to the role of atmospheric transport in the dust cycle. The classic global storms that occur during spring in the southern hemisphere are observed to transport dust from sources in the southern hemisphere to sinks or temporary depositories in the north. The question of whether atmospheric transport can close the dust cycle, i.e., return the dust to the southern hemisphere sources on some timescale, is clearly relevant to the solution of the puzzle of how the dust storm cycle is modulated, i.e., why storms occur in some years but not in others. There are data that suggest that the spring/early summer season in the northern hemisphere of Mars during the year following the major 1977 storms observed by Viking was very dusty. A number of observations of the vicinity of the receding north polar cap showed clear evidence of substantial dust activity in the sub-Arctic region.

Northern Studies at Northern Universities.

ERIC Educational Resources Information Center

Northern Review: A Multidisciplinary Journal of the Arts and Social Sciences of the North, 1994

1994-01-01

Describes college programs and research projects focused on the Arctic, northern studies, or northern concerns at Athabasca University (Alberta), the University of British Columbia, the University of Alaska Anchorage, the University of Alaska Fairbanks, the Scott Polar Institute at the University of Cambridge (England), and Kent State University…

Clinical usefulness of Western blotting and ELISA avidity for the diagnosis of human toxocariasis.

PubMed

Rudzińska, M; Kowalewska, B; Sikorska, K

2017-01-01

The serodiagnosis of human toxocariasis is difficult. Specific IgGs detected routinely with ELISA based on Toxocara excretory-secretory (TES) antigens often persist for years at an elevated level, which does not allow either the differentiation between an active and persistent infection or monitoring of the effect of treatment. Additionally, false-positive results may occur in co-infections with other helminths due to cross-reactions. We evaluated the usefulness of an IgG avidity index (AI) and a Western blotting (WB) IgG in the diagnosis of patients suspected of Toxocara infection. We studied 138 subjects who were submitted to serological testing two or more times. Confirmation of an infection by WB was achieved in 73.2% of patients. A high AI was obtained in 89.1% of patients, and low AI and borderline AI were found in only 10.9%. Low and borderline values of AI remained at similar levels in subsequent studies over 2-3 years. The results showed the necessity of obligatory verification of all ELISA IgG positive and questionable results by WB. The index of IgG avidity may be helpful in excluding recent infection, but its usefulness in detecting an active phase of invasion requires further research. © 2016 John Wiley & Sons Ltd.

2000 years of human activity in Tuchola Pinewoods (northern Poland)

NASA Astrophysics Data System (ADS)

Obremska, Milena; Ott, Florian; Słowiński, Michał; Lutyńska, Monika; Błaszkiewicz, Mirosław; Brauer, Achim

2014-05-01

During the last two millennia human activity and their settlements together with varying climate conditions strongly influenced landscape scale changes. Especially within palaeoecological records these environmental responses are well expressed. However, a robust age control is needed for the evaluation and interpretation of biotic proxies.We present a record from the annually laminated (varved) sediments of Lake Czechowskie, located in northern Poland. The investigated record covers the past 2000 years and demonstrates the continuous vegetation history and human activity in the Northern part of the Tuchola Pinewoods. The chronology was established by varve counting and confirmed by AMS 14C dating, 137Cs activity measurement and a tephra layer (Askja 1875). We used high-resolution biotic (pollen, green algae and diatom analysis) sedimentological (varve and sublayer thickness variations) and geochemical (µ-XRF data) proxies to reconstruct the environmental changes within a time of increasing human activity and fluctuating climatic conditions. Based on different spatial sampling and measuring increments the temporal resolution varies between subseasonal (µ-XRF), annual (varves) up to five-varveresolution (biotic proxies) making it possible to trace even short lasting local and regional changes. Our results display visible human pressure in this area between 50- 350 yr. AD (Roman Period) exerted by tribes related to the Wielbark Culture. The development of persisting settlements and agriculture took place at expense of surrounding hornbeam forests. An intensification of lake productivity (expressed as an increase of varve thickness) started after 250 AD. If this lake ecosystem response relates to an intensified agriculture (and a possible transport of nutrients from neighboring rural lands) or to a climate shift will be further discussed. The rapid decline of human indicators about 350 years AD at the transition to the migration period might be related to cooler

A Streamlined Western Blot Exercise: An Efficient and Greener Approach in the Laboratory Classroom

ERIC Educational Resources Information Center

Ness, Traci L.; Robinson, Rebekah L.; Mojadedi, Wais; Peavy, Lydia; Weiland, Mitch H.

2015-01-01

SDS-PAGE and western blotting are two commonly taught protein detection techniques in biochemistry and molecular biology laboratory classrooms. A pitfall associated with incorporating these techniques into the laboratory is the significant wait times that do not allow students to obtain timely results. The waiting associated with SDS-PAGE comes…

Antioxidant Activity, Total Phenolics and Flavonoid Contents of some Edible Green Seaweeds from Northern Coasts of the Persian Gulf.

PubMed

Farasat, Massoumeh; Khavari-Nejad, Ramazan-Ali; Nabavi, Seyed Mohammad Bagher; Namjooyan, Foroogh

2014-01-01

The antioxidant activity, contents of total phenolics and flavonoids were quantified in the methanolic extracts of four Ulva species (Ulva clathrata (Roth) C.Agardh, Ulva linza Linnaeus, Ulva flexuosa Wulfen and Ulva intestinalis Linnaeus) grown at different parts of northern coasts of the Persian Gulf in south of Iran. The seaweeds were collected from Dayyer, Taheri and Northern Ouli coasts in April 2011. Methanolic extracts of the seaweeds were assessed for their antioxidant activity using DPPH radical scavenging assay and was performed in a microplate reader. All species exhibited a DPPH radical scavenging activity, and among the species, Ulva clathrata demonstrated greater antioxidant potential with a low IC50 (0.881 mg mL(-1)) in comparison with those of the other species. Also the highest phenolic content (5.080 mg GAE g(-1)) and flavonoid content (33.094 mg RE g(-1)) were observed in U.clathrata. Total phenolic and flavonoid contents showed positive correlations with the DPPH radical scavenging activity (p < 0.01) and negative correlations with IC50 (p < 0.01).The results suggest that these edible green seaweeds possess antioxidant potential which could be considered for future applications in medicine, dietary supplements ,cosmetics or food industries.

Winter climate change affects growing-season soil microbial biomass and activity in northern hardwood forests.

PubMed

Durán, Jorge; Morse, Jennifer L; Groffman, Peter M; Campbell, John L; Christenson, Lynn M; Driscoll, Charles T; Fahey, Timothy J; Fisk, Melany C; Mitchell, Myron J; Templer, Pamela H

2014-11-01

Understanding the responses of terrestrial ecosystems to global change remains a major challenge of ecological research. We exploited a natural elevation gradient in a northern hardwood forest to determine how reductions in snow accumulation, expected with climate change, directly affect dynamics of soil winter frost, and indirectly soil microbial biomass and activity during the growing season. Soils from lower elevation plots, which accumulated less snow and experienced more soil temperature variability during the winter (and likely more freeze/thaw events), had less extractable inorganic nitrogen (N), lower rates of microbial N production via potential net N mineralization and nitrification, and higher potential microbial respiration during the growing season. Potential nitrate production rates during the growing season were particularly sensitive to changes in winter snow pack accumulation and winter soil temperature variability, especially in spring. Effects of elevation and winter conditions on N transformation rates differed from those on potential microbial respiration, suggesting that N-related processes might respond differently to winter climate change in northern hardwood forests than C-related processes. © 2014 John Wiley & Sons Ltd.

Isolation of genes negatively or positively co-expressed with human recombination activating gene 1 (RAG1) by differential display PCR (DD RT-PCR).

PubMed

Verkoczy, L K; Berinstein, N L

1998-10-01

Differential display PCR (DD RT-PCR) has been extensively used for analysis of differential gene expression, but continues to be hampered by technical limitations that impair its effectiveness. In order to isolate novel genes co-expressing with human RAG1, we have developed an effective, multi-tiered screening/purification approach which effectively complements the standard DD RT-PCR methodology. In 'primary' screens, standard DD RT-PCR was used, detecting 22 reproducible differentially expressed amplicons between clonally related cell variants with differential constitutive expression of RAG mRNAs. 'Secondary' screens used differential display (DD) amplicons as probes in low and high stringency northern blotting. Eight of 22 independent DD amplicons detected nine independent differentially expressed transcripts. 'Tertiary' screens used reconfirmed amplicons as probes in northern analysis of multiple RAG-and RAG+sources. Reconfirmed DD amplicons detected six independent RAG co-expressing transcripts. All DD amplicons reconfirmed by northern blot were a heterogeneous mixture of cDNAs, necessitating further purification to isolate single cDNAs prior to subcloning and sequencing. To effectively select the appropriate cDNAs from DD amplicons, we excised and eluted the cDNA(s) directly from regions of prior northern blots in which differentially expressed transcripts were detected. Sequences of six purified cDNA clones specifically detecting RAG co-expressing transcripts included matches to portions of the human RAG2 and BSAP regions and to four novel partial cDNAs (three with homologies to human ESTs). Overall, our results also suggest that even when using clonally related variants from the same cell line in addition to all appropriate internal controls previously reported, further screening and purification steps are still required in order to efficiently and specifically isolate differentially expressed genes by DD RT-PCR.

The Chemistry and Biological Activities of Natural Products from Northern African Plant Families: From Taccaceae to Zygophyllaceae.

PubMed

Ntie-Kang, Fidele; Njume, Leonel E; Malange, Yvette I; Günther, Stefan; Sippl, Wolfgang; Yong, Joseph N

2016-04-01

Traditional medicinal practices have a profound influence on the daily lives of people living in developing countries, particularly in Africa, since the populations cannot generally afford the cost of Western medicines. We have undertaken to investigate the correlation between the uses of plants in Traditional African medicine and the biological activities of the derived natural products, with the aim to validate the use of traditional medicine in Northern African communities. The literature is covered for the period 1959-2015 and part III of this review series focuses on plant families with names beginning with letters T to Z. The authors have focused on curating data from journals in natural products and phytomedicine. Within each journal home page, a query search based on country name was conducted. All articles "hits" were then verified, one at a time, that the species was harvested within the Northern African geographical regions. The current data partly constitutes the bases for the development of the Northern African natural compounds database. The review discusses 284 plant-based natural compounds from 34 species and 11 families. It was observed that the ethnobotanical uses of less than 40 % of the plant species surveyed correlated with the bioactivities of compounds identified.

Monitoring and descriptive analysis of radon in relation to seismic activity of Northern Pakistan.

PubMed

Jilani, Zeeshan; Mehmood, Tahir; Alam, Aftab; Awais, Muhammad; Iqbal, Talat

2017-06-01

Earthquakes are one of the major causes of natural disasters and its forecasting is challenging task. Some precursory phenomenon exists in theory in relation to earthquakes occurrence. The emission of radioactive gas named 'radon' before the earthquakes is a potential earthquake precursory candidate. The study aims to monitor and to analyze the radon in relation to seismic activity in Northern Pakistan. For this purpose RTM-2200 has been used to monitor the changes in radon concentration from August 01, 2014 to January 31, 2015 in Northern Pakistan. Significant temporal variations has been observed in radon concentration. The bivariate analysis of radon with other variables manifests its positive relationship with air pressure and relative humidity and negative relationship with temperature. 2σ upper control limit on monthly basis are computed for detection of anomalous trends in the data. Overall increasing trend is detected in radon concentration. Five earthquakes from August 01, 2014 to January 31, 2015 have been selected from earthquake catalogue, depending upon their magnitude and distance from monitoring station and out of which radon concentration can be associated with only two earthquakes correlated with tectonic effect of radon concentration. Both of events have same magnitude 5.5 and occurred on September 13 and October 14, 2014 respectively. Very large variations have been observed in radon for the last two months of the study period, which may be occurred due to some other geological and environmental changes, but are not related to the earthquake activity. Copyright © 2017 Elsevier Ltd. All rights reserved.

Evidence for an east-west regional gravity trend in northern Tunisia: Insight into the structural evolution of northern Tunisian Atlas

NASA Astrophysics Data System (ADS)

Jallouli, Chokri; Mogren, Saad; Mickus, Kevin; Turki, Mohamed Moncef

2013-11-01

The Atlas orogeny in northern Algeria and Tunisia led to the destruction of Tethys oceanic lithosphere and cumulated in a collision of microplates rifted off the European margin with the North African continental margin. The location of the boundary between African plate and Kabylian microplate is expressed in northern Algeria by a crustal wedge with double vergence of thrust sheets, whereas in northern Tunisia the geologic environment is more complex and the location of the plate boundary is ambiguous. In this study, we analyzed gravity data to constrain the crustal structure along the northern margin of Tunisia. The analysis includes a separation of regional and residual gravity anomalies and the application of gradient operators to locate density contrast boundaries. The horizontal gradient magnitude and directional gradient highlight a prominent regional E-W gravity gradient in the northern Tunisian Atlas interpreted as a deep fault (active since at least the Early Mesozoic) having a variable kinematic activity depending on the tectonic regime in the region. The main E-W gravity gradient separates two blocks having different gravitational and seismic responses. The southern block has numerous gravity lineaments trending in different directions implying several density variations within the crust, whereas the northern block shows a long-wavelength negative gravity anomaly with a few lineaments. Taking into account the geologic context of the Western Mediterranean region, we consider the E-W prominent feature as the boundary between African plate and Kabylian microplate in northern Tunisia that rifted off Europe. This hypothesis fits most previous geological and geophysical studies and has an important impact on the petroleum and mineral resource prospection as these two blocks were separated by an ocean and they did not belong to the same margin.

Dot-Blot Immunoassay of Fasciola gigantica Infection using 27 kDa and Adult Worm Regurge Antigens in Egyptian Patients

PubMed Central

Kamel, Hanan H.; Saad, Ghada A.

2013-01-01

The purpose of the present study was to evaluate the potential role of the 27-Kilodalton (KDa) antigen versus Fasciola gigantica adult worm regurge antigens in a DOT-Blot assay and to assess this assay as a practical tool for diagnosis fascioliasis in Egyptian patients. Fasciola gigantica antigen of an approximate molecular mass 27-(KDa) was obtained from adult worms by a simple elution SDS-PAGE. A Dot-Blot was developed comparatively to adult worm regurge antigens for the detection of specific antibodies from patients infected with F. gigantica in Egypt. Control sera were obtained from patients with other parasitic infections and healthy volunteers to assess the test and compare between the antigens. The sensitivity, specificity, positive and negative predictive values of Dot-Blot using the adult worm regurge were 80%, 90%, 94.1%, and 69.2% respectively, while those using 27-KDa were 100% which confirms the diagnostic potential of this antigen. All patients infected with Fasciola were positive, with cross reactivity reported with Schistosoma mansoni serum samples. This 27-KDa Dot-Blot assay showed to be a promising test which can be used for serodiagnosis of fascioliasis in Egyptian patients especially, those presenting with hepatic disease. It is specific, sensitive and easy to perform method for the rapid diagnosis particularly when more complex laboratory tests are unavailable. PMID:23710084

Dot-blot immunoassay of Fasciola gigantica infection using 27 kDa and adult worm regurge antigens in Egyptian patients.

PubMed

Kamel, Hanan H; Saad, Ghada A; Sarhan, Rania M

2013-04-01

The purpose of the present study was to evaluate the potential role of the 27-Kilodalton (KDa) antigen versus Fasciola gigantica adult worm regurge antigens in a DOT-Blot assay and to assess this assay as a practical tool for diagnosis fascioliasis in Egyptian patients. Fasciola gigantica antigen of an approximate molecular mass 27-(KDa) was obtained from adult worms by a simple elution SDS-PAGE. A Dot-Blot was developed comparatively to adult worm regurge antigens for the detection of specific antibodies from patients infected with F. gigantica in Egypt. Control sera were obtained from patients with other parasitic infections and healthy volunteers to assess the test and compare between the antigens. The sensitivity, specificity, positive and negative predictive values of Dot-Blot using the adult worm regurge were 80%, 90%, 94.1%, and 69.2% respectively, while those using 27-KDa were 100% which confirms the diagnostic potential of this antigen. All patients infected with Fasciola were positive, with cross reactivity reported with Schistosoma mansoni serum samples. This 27-KDa Dot-Blot assay showed to be a promising test which can be used for serodiagnosis of fascioliasis in Egyptian patients especially, those presenting with hepatic disease. It is specific, sensitive and easy to perform method for the rapid diagnosis particularly when more complex laboratory tests are unavailable.

A new species of Leptotrombidium (Acari:Trombiculidae) collected in active rice fields in northern Thailand.

PubMed

Tanskul, P; Linthicum, K J

1997-05-01

Leptotrombidium (Leptotrombidium) chiangraiensis Tanskul & Linthicum is described and illustrated as new from specimens collected from the rodents Rattus rattus (L., 1758), Rattus argentiventer (Robinson & Kloss, 1916), Rattus losea (Swinhoe, 1870), and Bandicota indica (Bechstein, 1800) in Chiangrai Province northern Thailand. The new species was collected in active rice fields and adjacent fruit plantation areas. The etiological agent of scrub typhus, Orientia (formerly Rickettsia) tsutsugamushi (Hayashi), has been isolated from patients who live and work in the same habitat where L. chiangraiensis is the predominant Leptotrombidium species.

The Quaternary thrust system of the northern Alaska Range

USGS Publications Warehouse

Bemis, Sean P.; Carver, Gary A.; Koehler, Richard D.

2012-01-01

The framework of Quaternary faults in Alaska remains poorly constrained. Recent studies in the Alaska Range north of the Denali fault add significantly to the recognition of Quaternary deformation in this active orogen. Faults and folds active during the Quaternary occur over a length of ∼500 km along the northern flank of the Alaska Range, extending from Mount McKinley (Denali) eastward to the Tok River valley. These faults exist as a continuous system of active structures, but we divide the system into four regions based on east-west changes in structural style. At the western end, the Kantishna Hills have only two known faults but the highest rate of shallow crustal seismicity. The western northern foothills fold-thrust belt consists of a 50-km-wide zone of subparallel thrust and reverse faults. This broad zone of deformation narrows to the east in a transition zone where the range-bounding fault of the western northern foothills fold-thrust belt terminates and displacement occurs on thrust and/or reverse faults closer to the Denali fault. The eastern northern foothills fold-thrust belt is characterized by ∼40-km-long thrust fault segments separated across left-steps by NNE-trending left-lateral faults. Altogether, these faults accommodate much of the topographic growth of the northern flank of the Alaska Range.Recognition of this thrust fault system represents a significant concern in addition to the Denali fault for infrastructure adjacent to and transecting the Alaska Range. Although additional work is required to characterize these faults sufficiently for seismic hazard analysis, the regional extent and structural character should require the consideration of the northern Alaska Range thrust system in regional tectonic models.

The antibody response to Dracunculus medinensis in an endemic human population of northern Ghana.

PubMed

Bloch, P; Simonsen, P E; Vennervald, B J

1993-03-01

The serum antibody response (total, and isotypes IgG1, IgG4, IgM, IgA and IgE) to Guinea worm infection was examined in humans from a highly endemic area of northern Ghana by ELISA and SDS-PAGE/Western blot techniques using an adult D. medinensis antigen. Sera were obtained early and late in the peak transmission period, from persons with patent and postpatent infections, as well as from persons from the same endemic area who claimed never to have had Guinea worm infection. To observe for potential cross-reactions in the tests, sera were also obtained from areas with no transmission of Guinea worm from patients with hookworm, O. volvulus and W. bancrofti infections, and from non-infected controls. Sera from persons living in the Guinea worm endemic area reacted extensively with Guinea worm antigen in both tests, and large numbers of bands were produced in the Western blots (up to 35 identified for some sera). For most antibody isotypes, the ELISA absorbance values obtained with sera from the same individuals varied between the two transmission seasons, with the highest titres present towards the end of the peak transmission period. The mean antibody titres for persons in the patent and postpatent infection categories were not significantly different when sera were obtained at the same season of the year. Persons from the endemic area, who claimed never to experience patent infections, also had antibodies to Guinea worm, although at significantly lower mean levels than for the patent and postpatent categories. The highest specificity in the ELISA and the most homogenous Western blots were obtained when detecting for antibodies of the IgG4 isotype.

A research design for the quantification of the neuropeptides substance p and calcitonin gene-related Peptide in rat skin using Western blot analysis.

PubMed

Lapin, Guilherme Abbud Franco; Hochman, Bernardo; Nishioka, Michele Akemi; Maximino, Jessica Ruivo; Chadi, Gerson; Ferreira, Lydia Masako

2015-06-01

To describe and standardize a protocol that overcomes the technical limitations of Western blot (WB) analysis in the quantification of the neuropeptides substance P (SP) and calcitonin gene-related peptide (CGRP) following nociceptive stimuli in rat skin. Male Wistar rats (Rattus norvegicus albinus) weighing 250 to 350 g were used in this study. Elements of WB analysis were adapted by using specific manipulation of samples, repeated cycles of freezing and thawing, more thorough maceration, and a more potent homogenizer; increasing lytic reagents; promoting greater inhibition of protease activity; and using polyvinylidene fluoride membranes as transfer means for skin-specific protein. Other changes were also made to adapt the WB analysis to a rat model. University research center. Western blot analysis adapted to a rat model. This research design has proven effective in collecting and preparing skin samples to quantify SP and CGRP using WB analysis in rat skin. This study described a research design that uses WB analysis as a reproducible, technically accessible, and cost-effective method for the quantification of SP and CGRP in rat skin that overcomes technical biases.

Physical activity and risk of ischemic stroke in the Northern Manhattan Study

PubMed Central

Willey, J Z.; Moon, Y P.; Paik, M C.; Boden-Albala, B; Sacco, R L.; Elkind, M S.V.

2009-01-01

Background: It is controversial whether physical activity is protective against first stroke among older persons. We sought to examine whether physical activity, as measured by intensity of exercise and energy expended, is protective against ischemic stroke. Methods: The Northern Manhattan Study is a prospective cohort study in older, urban-dwelling, multiethnic, stroke-free individuals. Baseline measures of leisure-time physical activity were collected via in-person questionnaires. Cox proportional hazards models were constructed to examine whether energy expended and intensity of physical activity were associated with the risk of incident ischemic stroke. Results: Physical inactivity was present in 40.5% of the cohort. Over a median follow-up of 9.1 years, there were 238 incident ischemic strokes. Moderate- to heavy-intensity physical activity was associated with a lower risk of ischemic stroke (adjusted hazard ratio [HR] 0.65, 95% confidence interval [0.44–0.98]). Engaging in any physical activity vs none (adjusted HR 1.16, 95% CI 0.88–1.51) and energy expended in kcal/wk (adjusted HR per 500-unit increase 1.01, 95% CI 0.99–1.03) were not associated with ischemic stroke risk. There was an interaction of sex with intensity of physical activity (p = 0.04), such that moderate to heavy activity was protective against ischemic stroke in men (adjusted HR 0.37, 95% CI 0.18–0.78), but not in women (adjusted HR 0.92, 95% CI 0.57–1.50). Conclusions: Moderate- to heavy-intensity physical activity, but not energy expended, is protective against risk of ischemic stroke independent of other stroke risk factors in men in our cohort. Engaging in moderate to heavy physical activities may be an important component of primary prevention strategies aimed at reducing stroke risk. GLOSSARY CI = confidence interval; HR = hazard ratio; MET = metabolic equivalents. PMID:19933979

Hydrochemical evaluation of the influences of mining activities on river water chemistry in central northern Mongolia.

PubMed

Batsaikhan, Bayartungalag; Kwon, Jang-Soon; Kim, Kyoung-Ho; Lee, Young-Joon; Lee, Jeong-Ho; Badarch, Mendbayar; Yun, Seong-Taek

2017-01-01

Although metallic mineral resources are most important in the economy of Mongolia, mining activities with improper management may result in the pollution of stream waters, posing a threat to aquatic ecosystems and humans. In this study, aiming to evaluate potential impacts of metallic mining activities on the quality of a transboundary river (Selenge) in central northern Mongolia, we performed hydrochemical investigations of rivers (Tuul, Khangal, Orkhon, Haraa, and Selenge). Hydrochemical analysis of river waters indicates that, while major dissolved ions originate from natural weathering (especially, dissolution of carbonate minerals) within watersheds, they are also influenced by mining activities. The water quality problem arising from very high turbidity is one of the major environmental concerns and is caused by suspended particles (mainly, sediment and soil particles) from diverse erosion processes, including erosion of river banks along the meandering river system, erosion of soils owing to overgrazing by livestock, and erosion by human activities, such as mining and agriculture. In particular, after passing through the Zaamar gold mining area, due to the disturbance of sediments and soils by placer gold mining, the Tuul River water becomes very turbid (up to 742 Nephelometric Turbidity Unit (NTU)). The Zaamar area is also the contamination source of the Tuul and Orkhon rivers by Al, Fe, and Mn, especially during the mining season. The hydrochemistry of the Khangal River is influenced by heavy metal (especially, Mn, Al, Cd, and As)-loaded mine drainage that originates from a huge tailing dam of the Erdenet porphyry Cu-Mo mine, as evidenced by δ 34 S values of dissolved sulfate (0.2 to 3.8 ‰). These two contaminated rivers (Tuul and Khangal) merge into the Orkhon River that flows to the Selenge River near the boundary between Mongolia and Russia and then eventually flows into Lake Baikal. Because water quality problems due to mining can be critical

Nonenzymatic chemiluminescent detection and quantitation of total protein on Western and slot blots allowing subsequent immunodetection and sequencing.

PubMed

Alba, F J; Daban, J R

1997-10-01

We have studied the light emission efficiency of proteins labeled with different fluorescent dyes chemically excited by the bis(2,4,6-trichlorophenyl)oxalate (TCPO)-H2O2 reaction. Using this peroxyoxalate chemiluminescence system, the best results were obtained with proteins covalently labeled with 2-methoxy-2,4-diphenyl-3(2H)-furanone (MDPF). Blotted proteins on polyvinylidene difluoride (PVDF) membranes can be labeled rapidly with MDPF. Our results demonstrate that energy from the excited intermediate produced in the TCPO-H2O2 reaction can be efficiently transferred to MDPF-labeled proteins in solution and on PVDF membranes. Although this nonenzymatic chemiluminescent system produces a background emission that reduces the sensitivity, the method developed in this work allows detection of 5 ng of protein in blots after 5 min exposure to X-ray film. Chemiluminescence of MDPF-labeled proteins on Western and slot blots may also be detected and quantified using a charge-coupled device (CCD) camera or a storage phosphor imaging system. This chemiluminescent method allows the staining of the total electrophoretic pattern but does not preclude further N-terminal sequencing and immunodetection of specific bands.

Active stress along the ne external margin of the Apennines: the Ferrara arc, northern Italy

NASA Astrophysics Data System (ADS)

Montone, Paola; Mariucci, M. Teresa

1999-09-01

We have analysed borehole breakout data from 12 deep wells in order to constrain the direction of the minimum and maximum horizontal stress in a part of the Po Plain, northern Italy, characterised by a ˜N-S prevailing compressional stress regime, and in order to shed light on the regional state of stress and on the correlation between the active stress field and the orientation of tectonic structures. The results have been compared with seismological data relating to 1988-1995 crustal seismicity (2.5< Md<4.8) and to the 1983 Parma ( Ms=5.0) and the 1996 Reggio Emilia ( Ms=5.1) events. Plio-Pleistocene mesostructural data are also described in order to better define the present-day stress field and to understand the active tectonic processes in particular stress provinces. The borehole breakout analysis, in accordance with the seismicity and mesostructural data, shows the presence of a predominant compression area, characterised by approximately N-S maximum horizontal stress, along the outer thrust of the Ferrara arc. Particularly, the breakout analysis indicates a minimum horizontal stress, N81W±22° relative to a total of eleven analysed wells, with 3746 m cumulative total length of breakout zones. Among these, nine wells are located in the same tectonic structure, consisting of an arc of asymmetric folds overthrust towards the NE. The breakout results for these wells are quite similar in terms of minimum horizontal stress direction (˜E-W oriented). The other two wells are located in the outside sector of the arc and one of them shows a different minimum horizontal stress direction, probably distinctive of another tectonic unit. On the basis of these new reliable stress indicators, the active compressive front in this area is located along the termination of the external northern Apenninic arc.

Blotting Assisted by Heating and Solvent Extraction for DESI-MS Imaging

NASA Astrophysics Data System (ADS)

Cabral, Elaine C.; Mirabelli, Mario F.; Perez, Consuelo J.; Ifa, Demian R.

2013-06-01

Imprints of potato sprout ( Solanum tuberosum L.), gingko leaves (Gingko biloba L. ) and strawberries (Fragaria x ananassa Duch. ) were successfully imaged by desorption electrospray ionization mass spectrometry (DESI-MS) on TLC plates through blotting assisted by heating and/or solvent extraction. Ion images showing the distribution of significant compounds such as glycoalkaloid toxins in potato sprout, ginkgolic acids and flavonoids in ginkgo leaves, and sugars and anthocyanidin in strawberry were obtained. Practical implications of this work include analysis of a wide range of irregular or soft materials by different imprinting conditions without requiring the addition of matrices or use of specific kinds of surfaces.

Perceiving land-degrading activities from the lay perspective in northern China.

PubMed

Lee, Harry F; Zhang, David D

2005-11-01

Investigation into local peoples' perceptions can produce useful information that could be incorporated into the decision-making process to help resolve environmental problems. Within the arena of land degradation, a number of studies have also been conducted to explore local peoples' views of the problem. However, the perceptions of land-degrading practices of the general public have so far not been actively solicited. This study aimed to contribute to this area of research by adopting the psychometric scaling technique to empirically explore the lay public's ecological risk perceptions of land-degrading activities in Minqin County in Gansu Province, northern China. The primary data were collected via a questionnaire survey (n=1,138) administered between 14 and 31 December 2002. The major findings of the survey were: (1) Respondents perceived the ecological risks posed by different land-degrading activities to be different. (2) There was a considerable incongruence in the way in which mining of groundwater was conceived by experts and laymen, respectively. (3) Respondents were pretty unsure of expert knowledge. (4) Respondents' ecological risk perceptions were significantly affected by their personal attributes. As far as the policy implications of these findings are concerned, this study accentuates that we must be aware of, and involved in, the environmental perceptions of the lay public in order to succeed in guiding any human-environment tensions along more sustainable trajectories and navigating the transition to sustainability.

Water contamination from oil extraction activities in Northern Peruvian Amazonian rivers.

PubMed

Yusta-García, Raúl; Orta-Martínez, Martí; Mayor, Pedro; González-Crespo, Carlos; Rosell-Melé, Antoni

2017-06-01

Oil extraction activities in the Northern Peruvian Amazon have generated a long-standing socio-environmental conflict between oil companies, governmental authorities and indigenous communities, partly derived from the discharge of produced waters containing high amounts of heavy metals and hydrocarbons. To assess the impact of produced waters discharges we conducted a meta-analysis of 2951 river water and 652 produced water chemical analyses from governmental institutions and oil companies reports, collected in four Amazonian river basins (Marañon, Tigre, Corrientes and Pastaza) and their tributaries. Produced water discharges had much higher concentrations of chloride, barium, cadmium and lead than are typically found in fresh waters, resulting in the widespread contamination of the natural water courses. A significant number of water samples had levels of cadmium, barium, hexavalent chromium and lead that did not meet Peruvian and international water standards. Our study shows that spillage of produced water in Peruvian Amazon rivers placed at risk indigenous population and wildlife during several decades. Furthermore, the impact of such activities in the headwaters of the Amazon extended well beyond the boundaries of oil concessions and national borders, which should be taken into consideration when evaluating large scale anthropogenic impacts in the Amazon. Copyright © 2017 Elsevier Ltd. All rights reserved.

Impacts of forest harvest on active carbon and microbial properties of a volcanic ash cap soil in northern Idaho

Treesearch

Deborah S. Page-Dumroese; Matt D. Busse; Steven T. Overby; Brian D. Gardner; Joanne M. Tirocke

2015-01-01

Soil quality assessments are essential for determining impacts on belowground microbial community structure and function. We evaluated the suitability of active carbon (C), a rapid field test, as an indicator of soil biological quality in five paired forest stands (clear cut harvested 40 years prior and unharvested) growing on volcanic ash-cap soils in northern Idaho....

Marking guides for northern hardwoods under the selection system

Treesearch

Carl, Jr. Arbogast

1957-01-01

The preparation of these guides has been a joint undertaking of research and national forest administration. Reviews and suggestions of other members of the Station who are active in northern hardwood research were helpful, especially those from men working at the Upper Peninsula Research Center in Marquette, Mich., and the Northern Lakes Research Center in Wausau, Wis...

Seismic activity prediction using computational intelligence techniques in northern Pakistan

NASA Astrophysics Data System (ADS)

Asim, Khawaja M.; Awais, Muhammad; Martínez-Álvarez, F.; Iqbal, Talat

2017-10-01

Earthquake prediction study is carried out for the region of northern Pakistan. The prediction methodology includes interdisciplinary interaction of seismology and computational intelligence. Eight seismic parameters are computed based upon the past earthquakes. Predictive ability of these eight seismic parameters is evaluated in terms of information gain, which leads to the selection of six parameters to be used in prediction. Multiple computationally intelligent models have been developed for earthquake prediction using selected seismic parameters. These models include feed-forward neural network, recurrent neural network, random forest, multi layer perceptron, radial basis neural network, and support vector machine. The performance of every prediction model is evaluated and McNemar's statistical test is applied to observe the statistical significance of computational methodologies. Feed-forward neural network shows statistically significant predictions along with accuracy of 75% and positive predictive value of 78% in context of northern Pakistan.

Active intra-basin faulting in the Northern Basin of Lake Malawi from seismic reflection data

NASA Astrophysics Data System (ADS)

Shillington, D. J.; Chindandali, P. R. N.; Scholz, C. A.; Ebinger, C. J.; Onyango, E. A.; Peterson, K.; Gaherty, J. B.; Nyblade, A.; Accardo, N. J.; McCartney, T.; Oliva, S. J.; Kamihanda, G.; Ferdinand, R.; Salima, J.; Mruma, A. H.

2016-12-01

Many questions remain about the development and evolution of fault systems in weakly extended rifts, including the relative roles of border faults and intra-basin faults, and segmentation at various scales. The northern Lake Malawi (Nyasa) rift in the East African Rift System is an early stage rift exhibiting pronounced tectonic segmentation, which is defined by 100-km-long border faults. The basins also contain a series of intrabasinal faults and associated synrift sediments. The occurrence of the 2009 Karonga Earthquake Sequence on one of these intrabasinal faults indicates that some of them are active. Here we present new multichannel seismic reflection data from the Northern Basin of the Malawi Rift collected in 2015 as a part of the SEGMeNT (Study of Extension and maGmatism in Malawi aNd Tanzania) project. This rift basin is bound on its east side by the west-dipping Livingstone border fault. Over 650 km of seismic reflection profiles were acquired in the Northern Basin using a 500 to 1540 cu in air gun array and a 1200- to 1500-m seismic streamer. Dip lines image a series of north-south oriented west-dipping intra-basin faults and basement reflections up to 5 s twtt near the border fault. Cumulative offsets on intra-basin faults decrease to the west. The largest intra-basin fault has a vertical displacement of >2 s two-way travel time, indicating that it has accommodated significant total extension. Some of these intra-basin faults offset the lake bottom and the youngest sediments by up to 50 s twtt ( 37 m), demonstrating they are still active. The two largest intra-basin faults exhibit the largest offsets of young sediments and also correspond to the area of highest seismicity based on analysis of seismic data from the 89-station SEGMeNT onshore/offshore network (see Peterson et al, this session). Fault patterns in MCS profiles vary along the basin, suggesting a smaller scale of segmentation of faults within the basin; these variations in fault patterns

Antimicrobial activity of natural products from the flora of Northern Ontario, Canada.

PubMed

Vandal, Janique; Abou-Zaid, Mamdouh M; Ferroni, Garry; Leduc, Leo G

2015-06-01

The number of multidrug resistant (MDR) microorganisms is increasing and the antimicrobial resistance expressed by these pathogens is generating a rising global health crisis. In fact, there are only a few antimicrobial agents left that can be used against MDR bacteria and fungi. In this study, the antimicrobial activities of selected natural products from the flora of Northern Ontario against selected microorganisms are reported. Plants were collected from Sault Ste. Marie, Ontario, Canada, and ethanol extracts were prepared using EtOH:H2O (1:1, v/v). Fungal cultures used in this study were Candida albicans ATCC 10231 and Schizosaccharomyces octosporus. Bacterial cultures employed included Staphylococcus aureus ATCC 29213, Escherichia coli ATCC 25922, Pseudomonas aeruginosa ATCC 27853, Mycobacterium phlei ATCC 11758, and Streptococcus lactis ATCC 19435. The microplate resazurin assay was used to screen for antimicrobial activity. Extracts of four plant species Chimaphila umbellata L. (Pyrolaceae), Betula papyrifera Marshall (Betulaceae), Rhus typhina L. (Anacardiaceae), and Fraxinus pennsylvanica Marshall (Oleaceae), and six compounds (gallic acid, ethyl gallate, caffeic acid, sinapic acid, gentisic acid, and chlorogenic acid) demonstrated antibacterial or antifungal activities with MICs ranging from 62.5 to 1000 µg/mL, respectively, for a chemical fraction of an extract from Betula papyrifera against the bacterium S. aureus. The present study has shown that certain plant extracts and select fractions and standard chemical compounds exhibit antimicrobial effects. Prince's Pine, Chimaphila umbellate, White Birch, Betula papyrifera, Staghorn Sumac, Rhus typhina, and Green Ash, Fraxinus pennsylvanica were the principal extracts exhibiting notable antibacterial and/or antifungal activities; while gallic acid, ethyl gallate, and caffeic acid demonstrated antibacterial activities and sinapic acid, gentisic acid, and chlorogenic acid demonstrated antifungal activities.

A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting.

PubMed

Wiśniewski, Jacek R; Mann, Matthias

2016-07-01

Proteomics and other protein-based analysis methods such as Western blotting all face the challenge of discriminating changes in the levels of proteins of interest from inadvertent changes in the amount loaded for analysis. Mass-spectrometry-based proteomics can now estimate the relative and absolute amounts of thousands of proteins across diverse biological systems. We reasoned that this new technology could prove useful for selection of very stably expressed proteins that could serve as better loading controls than those traditionally employed. Large-scale proteomic analyses of SDS lysates of cultured cells and tissues revealed deglycase DJ-1 as the protein with the lowest variability in abundance among different cell types in human, mouse, and amphibian cells. The protein constitutes 0.069 ± 0.017% of total cellular protein and occurs at a specific concentration of 34.6 ± 8.7 pmol/mg of total protein. Since DJ-1 is ubiquitous and therefore easily detectable with several peptides, it can be helpful in normalization of proteomic data sets. In addition, DJ-1 appears to be an advantageous loading control for Western blot that is superior to those used commonly used, allowing comparisons between tissues and cells originating from evolutionarily distant vertebrate species. Notably, this is not possible by the detection and quantitation of housekeeping proteins, which are often used in the Western blot technique. The approach introduced here can be applied to select the most appropriate loading controls for MS-based proteomics or Western blotting in any biological system.

Detection of Diverse and High Molecular Weight Nesprin-1 and Nesprin-2 Isoforms Using Western Blotting.

PubMed

Carthew, James; Karakesisoglou, Iakowos

2016-01-01

Heavily utilized in cell and molecular biology, western blotting is considered a crucial technique for the detection and quantification of proteins within complex mixtures. In particular, the detection of members of the nesprin (nuclear envelope spectrin repeat protein) family has proven difficult to analyze due to their substantial isoform diversity, molecular weight variation, and the sheer size of both nesprin-1 and nesprin-2 giant protein variants (>800 kDa). Nesprin isoforms contain distinct domain signatures, perform differential cytoskeletal associations, occupy different subcellular compartments, and vary in their tissue expression profiles. This structural and functional variance highlights the need to distinguish between the full range of proteins within the nesprin protein family, allowing for greater understanding of their specific roles in cell biology and disease. Herein, we describe a western blotting protocol modified for the detection of low to high molecular weight (50-1000 kDa) nesprin proteins.

Comprehensive Evaluation of 1850-2100 Active Layer Thickness and Thawing Index Variability across the Northern Hemisphere

NASA Astrophysics Data System (ADS)

Frauenfeld, O. W.; Peng, X.; Zhang, T.

2016-12-01

Both the thawing index (TI) and active layer thickness (ALT) can be useful indicators of climate change in cold regions and have important implications for various surface-atmosphere interactions. Here, we analyze the spatial and temporal variability of the Northern Hemisphere TI and ALT under historical and projected climate change. We combine gridded and station-based observations to assess the multi-model ensemble mean of 16 of the Coupled Model Intercomparison Project phase 5 (CMIP5) models over 1850-2005. The TI and ALT are assessed based on 1901-2014 Climatic Research Unit (CRU) data, and observational ALT from 348 station locations across the Northern Hemisphere. We then employ three representative concentration pathways (RCP 2.6, 4.5, and 8.5) from the same CMIP5 multi-model ensemble means to evaluate changes for 2006-2100. Over the historical period, the TI varies from 0-11,000°C-days in the Northern Hemisphere, and we find good agreement between CMIP5 models and CRU data; however, the models generally underestimate observed TI and its long-term trends. Over the 2006-2100 period, the multi-model ensemble averaged TI increases significantly for all three RCPs, ranging from 1.5°C-days/yr for RCP 2.6, to 14°C-days/yr for RCP 8.5. The spatial variations in ALT from observing stations exhibit significant variability and generally range from 80-320 cm across the Northern Hemisphere, with some extreme values of 900 cm in the European Alps. Calculating observational ALT for 1971-2000 from CRU, we find lower values (30-650 cm). The CMIP5 climatology agrees well with the CRU estimates. ALT trends over the observational period are generally less than 1.5 cm/decade, but as high as 3 cm/decade in some isolated regions. While this general trend magnitude agrees with that from CMIP5, the multi-model ensemble underestimates trends and exhibits much less spatial variability. Projected trends range from 0.77 cm/decade in RCP 2.6, to 6.5 cm/decade in RCP 8.5 in the

Numerical modeling of an intense precipitation event and its associated lightning activity over northern Greece

NASA Astrophysics Data System (ADS)

Pytharoulis, I.; Kotsopoulos, S.; Tegoulias, I.; Kartsios, S.; Bampzelis, D.; Karacostas, T.

2016-03-01

This study investigates an intense precipitation event and its lightning activity that affected northern Greece and primarily Thessaloniki on 15 July 2014. The precipitation measurement of 98.5 mm in 15 h at the Aristotle University of Thessaloniki set a new absolute record maximum. The thermodynamic analysis indicated that the event took place in an environment that could support deep thunderstorm activity. The development of this intense event was associated with significant low-level convergence and upper-level divergence even before its triggering and a positive vertical gradient of relative vorticity advection. The high resolution (1.667 km × 1.667 km) non-hydrostatic WRF-ARW numerical weather prediction model was used to simulate this intense precipitation event, while the Lightning Potential Index was utilized to calculate the potential for lightning activity. Sensitivity experiments suggested that although the strong synoptic forcing assumed primary role in the occurrence of intense precipitation and lightning activity, their spatiotemporal variability was affected by topography. The application of the very fine resolution topography of NASA Shuttle Radar Topographic Mission improved the simulated precipitation and the calculated lightning potential.

Confirmation of the immunoreactivity of monoclonal anti-human C-terminal EGFR antibodies in bronze Corydoras Corydoras aeneus (Callichthyidae Teleostei) by Western Blot method.

PubMed

Mytych, Jennifer; Satora, Leszek; Kozioł, Katarzyna

2018-02-01

Bronze corydoras (Corydoras aeneus) uses the distal part of the intestine as accessory respiratory organ. Our previous study showed the presence of epidermal growth factor receptor (EGFR) cytoplasmic domain in the digestive tract of the bronze corydoras. In this study, using Western Blot method, we validated the results presented in the previous research. In detail, results of Western Blot analysis on digestive and respiratory part of bronze corydoras intestine homogenates confirmed the immunoreactivity of anti-cytoplasmic domain (C-terminal) human EGFR antibodies with protein band of approximately 180kDa (EGFR molecular weight). This indicates a high homology of EGFR domain between these species and the possibility of such antibody use in bronze corydoras. Statistically significantly higher EGFR expression was observed in the respiratory part of intestine when compared to the digestive part. This implies higher proliferation activity and angiogenesis of epithelium in this part of intestine, creating conditions for air respiration. Therefore, Corydoras aeneus may be considered as a model organism for the molecular studies of the mechanisms of epithelial proliferation initiation and inhibition depending on hypoxia and normoxia. Copyright © 2017. Published by Elsevier GmbH.

Deletion detection for diagnosis of Duchenne muscular dystrophy in the Japanese population--comparison between the polymerase chain reaction and the Southern blot analysis.

PubMed

Katayama, S; Takeshita, N; Yano, T; Ubagai, T; Qiu, X J; Katagiri, Y; Kubo, H; Hirakawa, S

1993-06-01

We compared the efficacy of the multiplex PCR with that of the cDNA analysis for detection of deletions of the DMD gene in the Japanese patients. Thirty males with DMD from 27 Japanese families were studied by the multiplex PCR, and 24 of them were also investigated by Southern blot analysis. We used five dystrophin cDNA probes for deletion analysis. A total of 19 regions were amplified by the PCR to detect deletions, 9 regions by the method of Chamberlain et al. and another 10 regions by the method of Beggs et al. Deletions were detected in 14 (52%) out of 27 DMD families by the PCR. Southern blot analysis detected deletions in 14 (64%) out of 22 families. Thirteen (93%) of the 14 DMD families with deletions detected by Southern blotting were also confirmed by the multiplex PCR. Provided care is taken in cases where the deletion is limited to a single exon, the multiplex PCR appears to be an efficient and useful alternative to conventional Southern blot analysis for detecting deletions during the prenatal and postnatal diagnosis of DMD.

Neotectonic deformation model of the Northern Algeria from Paleomagnetic data

NASA Astrophysics Data System (ADS)

Derder, M. E. M.; Henry, B.; Maouche, S.; Amenna, M.; Bayou, B.; Djellit, H.; Ymel, H.; Gharbi, S.; Abtout, A.; Ayache, M.

2012-04-01

The seismic activity of the Western Mediterranean area is partly concentrated in northern Africa, particularly in northern Algeria, as it is shown by the strongest recent earthquakes of "Zemmouri" 21 May 2003 Mw=6.9 and the "El Asnam" 10 October 1980 Ms= 7.3. This seismicity is due to the tectonic activity related to the convergence between Africa and Eurasia plates since at least the Oligocene. The deformation is mostly compressional with associated folds, strike-slip faults and thrusts, and a direction of shortening between N-S and NNW-SSE. This convergence involves a tectonic transpression which is expressed by active deformation along the plate boundary. In northern Algeria, the seismicity is concentrated in a coastal E-W thin band zone (the Tell Atlas). Active structures define there NE-SW trending folds and NE-SW sinistral transpressive faults, which affect the intermountain and coastal Neogene to Quaternary sedimentary basins (e.g. " Cheliff "basin, " Mitidja "basin, …). These reverse faults are associated with NW-SE to E-W strike-slips deep faults. The active tectonics could be explained by a simple blocks rotation kinematics model. In order to test the validity of this kinematic model, three different paleomagnetic studies have been conducted. The first one concerned the "Cheliff" basin where sedimentary Neogene formations were extensively sampled (66 sites). The second study was carried out on Miocene andesite and dacite rocks cropping out along the northern coastal zone of the "Cheliff" basin ("Beni Haoua" area, 19 sites). The third study has been carried out on the Miocene magmatic rocks (rhyolites and basalts) cropping out north-eastern part of the "Mitidja" basin ("Cap Djinet" - "Boumerdes" area, 23 sites). The obtained results show existence of paleomagnetic clockwise rotations in all the studied areas and then validates the kinematics block rotation model. Accordingly, the deformation related to the convergence between the Africa and Eurasia

Regulation of glutamate level in rat brain through activation of glutamate dehydrogenase by Corydalis ternata.

PubMed

Lee, Kwan Ho; Huh, Jae-Wan; Choi, Myung-Min; Yoon, Seung Yong; Yang, Seung-Ju; Hong, Hea Nam; Cho, Sung-Woo

2005-08-31

When treated with protopine and alkalized extracts of the tuber of Corydalis ternata for one year, significant decrease in glutamate level and increase in glutamate dehydrogenase (GDH) activity was observed in rat brains. The expression of GDH between the two groups remained unchanged as determined by Western and Northern blot analysis, suggesting a post-translational regulation of GDH activity in alkalized extracts treated rat brains. The stimulatory effects of alkalized extracts and protopine on the GDH activity was further examined in vitro with two types of human GDH isozymes, hGDH1 (house-keeping GDH) and hGDH2 (nerve-specific GDH). Alkalized extracts and protopine activated the human GDH isozymes up to 4.8-fold. hGDH2 (nerve- specific GDH) was more sensitively affected by 1 mM ADP than hGDH1 (house-keeping GDH) on the activation by alkalized extracts. Studies with cassette mutagenesis at ADP-binding site showed that hGDH2 was more sensitively regulated by ADP than hGDH1 on the activation by Corydalis ternata. Our results suggest that prolonged exposure to Corydalis ternata may be one of the ways to regulate glutamate concentration in brain through the activation of GDH.

Seismic surveys negatively affect humpback whale singing activity off northern Angola.

PubMed

Cerchio, Salvatore; Strindberg, Samantha; Collins, Tim; Bennett, Chanda; Rosenbaum, Howard

2014-01-01

Passive acoustic monitoring was used to document the presence of singing humpback whales off the coast of Northern Angola, and opportunistically test for the effect of seismic survey activity in the vicinity on the number of singing whales. Two Marine Autonomous Recording Units (MARUs) were deployed between March and December 2008 in the offshore environment. Song was first heard in mid June and continued through the remaining duration of the study. Seismic survey activity was heard regularly during two separate periods, consistently throughout July and intermittently in mid-October/November. Numbers of singers were counted during the first ten minutes of every hour for the period from 24 May to 1 December, and Generalized Additive Mixed Models (GAMMs) were used to assess the effect of survey day (seasonality), hour (diel variation), moon phase and received levels of seismic survey pulses (measured from a single pulse during each ten-minute sampled period) on singer number. Application of GAMMs indicated significant seasonal variation, which was the most pronounced effect when assessing the full dataset across the entire season (p<0.001); however seasonality almost entirely dropped out of top-ranked models when applied to a reduced dataset during the July period of seismic survey activity. Diel variation was significant in both the full and reduced datasets (from p<0.01 to p<0.05) and often included in the top-ranked models. The number of singers significantly decreased with increasing received level of seismic survey pulses (from p<0.01 to p<0.05); this explanatory variable was included among the top ranked models for one MARU in the full dataset and both MARUs in the reduced dataset. This suggests that the breeding display of humpback whales is disrupted by seismic survey activity, and thus merits further attention and study, and potentially conservation action in the case of sensitive breeding populations.

Seismic Surveys Negatively Affect Humpback Whale Singing Activity off Northern Angola

PubMed Central

Cerchio, Salvatore; Strindberg, Samantha; Collins, Tim; Bennett, Chanda; Rosenbaum, Howard

2014-01-01

Passive acoustic monitoring was used to document the presence of singing humpback whales off the coast of Northern Angola, and opportunistically test for the effect of seismic survey activity in the vicinity on the number of singing whales. Two Marine Autonomous Recording Units (MARUs) were deployed between March and December 2008 in the offshore environment. Song was first heard in mid June and continued through the remaining duration of the study. Seismic survey activity was heard regularly during two separate periods, consistently throughout July and intermittently in mid-October/November. Numbers of singers were counted during the first ten minutes of every hour for the period from 24 May to 1 December, and Generalized Additive Mixed Models (GAMMs) were used to assess the effect of survey day (seasonality), hour (diel variation), moon phase and received levels of seismic survey pulses (measured from a single pulse during each ten-minute sampled period) on singer number. Application of GAMMs indicated significant seasonal variation, which was the most pronounced effect when assessing the full dataset across the entire season (p<0.001); however seasonality almost entirely dropped out of top-ranked models when applied to a reduced dataset during the July period of seismic survey activity. Diel variation was significant in both the full and reduced datasets (from p<0.01 to p<0.05) and often included in the top-ranked models. The number of singers significantly decreased with increasing received level of seismic survey pulses (from p<0.01 to p<0.05); this explanatory variable was included among the top ranked models for one MARU in the full dataset and both MARUs in the reduced dataset. This suggests that the breeding display of humpback whales is disrupted by seismic survey activity, and thus merits further attention and study, and potentially conservation action in the case of sensitive breeding populations. PMID:24618836

Different healthy habits between northern and southern Spanish school children.

PubMed

Arriscado, Daniel; Knox, Emily; Zabala, Mikel; Zurita-Ortega, Félix; Dalmau, Jose Maria; Muros, Jose Joaquin

2017-01-01

Healthy habits are influenced by several factors such as geographical location. The aims of this study were to describe and compare healthy habits within two populations of sixth-grade primary school children (aged 11-12 years) from northern and southern Spain. A cross-sectional study using two representative samples of school children was conducted. Participants came from Logroño ( n  = 329) in the north and Granada ( n  = 284) in the south of Spain. Socio-demographic and anthropometric variables, adherence to the Mediterranean diet, aerobic fitness, and healthy lifestyles were recorded. Boys reported a higher level of physical activity and aerobic fitness than girls ( p  = 0.000). Southern school children reported significantly higher adherence to the Mediterranean diet (♀: p  = 0.041; ♂: p  = 0.008), lower aerobic fitness (♀: p  = 0.000; ♂: p  = 0.042) and hours of nightly sleep (♀: p  = 0.008, ♂: p  = 0.007) than northern school children. Southern boys also reported lower levels of physical activity ( p  = 0.013). There were slight or moderate correlations among all habits measured (physical activity, diet, screen and sleep time). Additionally, the physical activity level was inversely related to weight status. Overweight and obese northern boys reported less physical activity than healthy-weight northern boys ( p  = 0.020) and overweight and obese southern girls reported less physical activity than healthy-weight southern girls ( p  = 0.024). Results showed differences in physical activity, eating and sleep habits, and aerobic fitness according to geographical location. The relationships found among lifestyle habits indicate the need for health promotion interventions nationally and considering the differences discussed here.

Identification and characterization of Serpulina hyodysenteriae by restriction enzyme analysis and Southern blot analysis.

PubMed Central

Sotiropoulos, C; Coloe, P J; Smith, S C

1994-01-01

Chromosomal DNA restriction enzyme analysis and Southern blot hybridization were used to characterize Serpulina hyodysenteriae strains. When chromosomal DNAs from selected strains (reference serotypes) of S. hyodysenteriae were digested with the restriction endonuclease Sau3A and hybridized with a 1.1-kb S. hyodysenteriae-specific DNA probe, a common 3-kb band was always detected in S. hyodysenteriae strains but was absent from Serpulina innocens strains. When the chromosomal DNA was digested with the restriction endonuclease Asp 700 and hybridized with two S. hyodysenteriae-specific DNA probes (0.75 and 1.1 kb of DNA), distinct hybridization patterns for each S. hyodysenteriae reference strain and the Australian isolate S. hyodysenteriae 5380 were detected. Neither the 1.1-kb nor the 0.75-kb DNA probe hybridized with Asp 700- or Sau3A-digested S. innocens chromosomal DNA. The presence of the 3-kb Sau3A DNA fragment in S. hyodysenteriae reference strains from diverse geographical locations shows that this fragment is conserved among S. hyodysenteriae strains and can be used as a species-specific marker. Restriction endonuclease analysis and Southern blot hybridization with these well-defined DNA probes are reliable and accurate methods for species-specific and strain-specific identification of S. hyodysenteriae. Images PMID:7914209

Evaluation of the deformation parameters of the northern part of Eg

NASA Astrophysics Data System (ADS)

Mohamed, Abdel-Monem S.; Radwan, Ali M.; Sharf, Mohamed; Hamimi, Zakaria; Hegazy, Esraa E.; Abou Aly, Nadia; Gomaa, Mahmoud

2016-06-01

The northern part of Egypt is a rapidly growing development accompanied by the increased levels of standard living particularly in its urban areas. From tectonic and seismic point of views, the northern part of Egypt is one of the interested regions. It shows an active geologic structure attributed to the tectonic movements of the African and Eurasian plates from one side and the Arabian plate from the other side. From historical point of view and recent instrumental records, the northern part of Egypt is one of the seismo-active regions in Egypt. The investigations of the seismic events and their interpretations had led to evaluate the seismic hazard for disaster mitigation, for the safety of the densely populated regions and the vital projects. In addition to the monitoring of the seismic events, the most powerful technique of Global Navigation Satellite System (GNSS) will be used in determining crustal deformation where a geodetic network covers the northern part of Egypt. Joining the GPS Permanent stations of the northern part of Egypt with the Southern part of Europe will give a clear picture about the recent crustal deformation and the African plate velocity. The results from the data sets are compared and combined in order to determine the main characteristics of the deformation and hazard estimation for specified regions. Final compiled output from the seismological and geodetic analysis will throw lights upon the geodynamical regime of these seismo-active regions. This work will throw lights upon the geodynamical regime and to delineate the crustal stress and strain fields in the study region. This also enables to evaluate the active tectonics and surface deformation with their directions from repeated geodetic observations. The results show that the area under study suffers from continuous seismic activity related to the crustal movements taken place along trends of major faults

Early results from the Northern Gulf of Mexico Ecosystem Change and Hazard Susceptibility Project

USGS Publications Warehouse

Brock, John C.; Lavoie, Dawn L.; Poore, Richard Z.

2011-01-01

The northern Gulf of Mexico coastal region and its diverse ecosystems are threatened by population and development pressure and by the impacts of rising sea level and severe storms such as the series of hurricanes that has impacted the northern Gulf in recent years. In response to the complex management issues facing the region, the U.S. Geological Survey (USGS) organized a multidisciplinary research program to coordinate the activities of USGS and other scientists working in the northern Gulf of Mexico region (fig. 1). The Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility Project aims to develop a thorough understanding of the dynamic coastal ecosystems on the northern Gulf coast, the impact of human activities on these ecosystems, and the vulnerability of ecosystems and human communities to more frequent and more intense hurricanes in the future. A special issue of Geo-Marine Letters published in December 2009 is devoted to early results of studies completed as part of this project. These studies, which have been conducted at sites throughout the northern Gulf region, from the Chandeleur Islands to Apalachicola Bay, have focused on three themes: (1) The underlying geologic framework that exerts controls over coastal processes (2) The impact of human activities on nearshore water quality (3) Hurricanes and associated effects

Expression of activation-induced cytidine deaminase is associated with a poor prognosis of diffuse large B cell lymphoma patients treated with CHOP-based chemotherapy.

PubMed

Kawamura, Kiyoko; Wada, Akihiko; Wang, Ji-Yang; Li, Quanhai; Ishii, Akihiro; Tsujimura, Hideki; Takagi, Toshiyuki; Itami, Makiko; Tada, Yuji; Tatsumi, Koichiro; Shimada, Hideaki; Hiroshima, Kenzo; Tagawa, Masatoshi

2016-01-01

Activation-induced cytidine deaminase (AID) is involved in somatic hypermutation and class switch recombination processes in the antibody formation. The AID activity induces gene mutations and could be associated with transformation processes of B cells. Nevertheless, the relation between AID expression and the prognosis of B cell lymphoma patients remains uncharacterized. We examined expression levels of the AID gene in 89 lymph node specimens from lymphoma and non-lymphoma patients with Northern blot analysis and investigated an association with their survival. The AID gene was preferentially expressed in B cell lymphoma in particular in diffuse large B cell lymphoma and follicular lymphoma. We confirmed AID protein expression in the mRNA-positive but not in the negative specimens with Western blot analysis and immunohistochemical staining. Survival of the patients treated with cyclophosphamide-/doxorubicin-/vincristine-/prednisone-based chemotherapy demonstrated that the prognosis of diffuse large B cell patients was unfavorable in the mRNA-positive group compared with the negative group, and that AID expression levels were correlated with the poor prognosis. In contrast, AID expression was not linked with the prognosis of follicular lymphoma patients. AID expression is a predictive marker for an unfavorable outcome in DLBCL patients treated with the chemotherapy.

Identifying buried segments of active faults in the northern Rio Grande Rift using aeromagnetic, LiDAR,and gravity data, south-central Colorado, USA

USGS Publications Warehouse

Grauch, V.J.S.; Ruleman, Chester A.

2013-01-01

Combined interpretation of aeromagnetic and LiDAR data builds on the strength of the aeromagnetic method to locate normal faults with significant offset under cover and the strength of LiDAR interpretation to identify the age and sense of motion of faults. Each data set helps resolve ambiguities in interpreting the other. In addition, gravity data can be used to infer the sense of motion for totally buried faults inferred solely from aeromagnetic data. Combined interpretation to identify active faults at the northern end of the San Luis Basin of the northern Rio Grande rift has confirmed general aspects of previous geologic mapping but has also provided significant improvements. The interpretation revises and extends mapped fault traces, confirms tectonic versus fluvial origins of steep stream banks, and gains additional information on the nature of active and potentially active partially and totally buried faults. Detailed morphology of surfaces mapped from the LiDAR data helps constrain ages of the faults that displace the deposits. The aeromagnetic data provide additional information about their extents in between discontinuous scarps and suggest that several totally buried, potentially active faults are present on both sides of the valley.

Recent environmental change and prehistoric human activity in Egypt and Northern Sudan

NASA Astrophysics Data System (ADS)

Nicoll, Kathleen

2004-03-01

This paper reviews the various Late Quaternary records that are available from western Egypt and northern Sudan, which includes more than 500 published radiocarbon dates and various sedimentary archives from local landscape components, including palaeolakes, soils, drainages (wadis), and archaeological sites. This palaeoenvironmental compilation frames the spatial and temporal context of local cultural activities when the region was most hospitable ˜9000-6000 BP; at this time, monsoonal weather influenced the portion of the African continental interior, creating enough convective rainfall for occasional surface water storage. In this part of the modern Sahara, rapid hydroclimatic changes play a key role in geomorphic evolution and resource availability. As 'watering holes' formed and dried up in the Early to Middle Holocene, Neolithic people developed various subsistence strategies, including opportunistic hunting of small animals (e.g. gazelle and hare), and food-related (e.g. wild sorghum, millet, and legumes) activities: gathering, plant cultivation and livestock-rearing. During its wettest phases during the 'monsoonal maximum,' the area was drought-prone, sustaining a meager steppe-shrub desert flora. Further desertification and aeolian deflation during the Middle and Late Holocene fostered technological innovation, migration and settlement, as well as the further development of agrarian communities and complex culture.

Monoclonal Antibodies against Small Molecule Natural Products and Their Applications, Eastern Blotting and Knockout Extract

PubMed Central

Shoyama, Yukihiro

2011-01-01

To determine the hapten number in hapten-carrier protein conjugate matrix-assisted laser desorption/ionization (MALDI) tof mass spectrometry was applied. Highly specific anti-ginsenoside Rb1 and Rg1 monoclonal antibodies (MAbs) were prepared. Ginsenosides were developed on thin layer chromatography (TLC) plates which were covered by a polyvinylidene difluoride (PVDF) membrane resulting in blotting. The membrane was treated with NaIO4 solution to release the aldehyde group on the sugar moiety of the ginsenosides. By treatment of the membrane with a protein solution the ginsenoside-protein conjugation as a Schiff-base occurred, which can function to fix it to the PVDF membrane. A part of the ginsenoside aglycone was reacted with anti-ginsenoside Rb1 MAb, secondary MAb conjugated with enzyme and finally a substrate was added, resulting in a specific and highly sensitive staining that we named Eastern blotting. Furthermore, it makes one-step isolation of ginsenoside Rb1 possible using an immuno-affinity column conjugated with anti-ginsenoside Rb1 MAb. Furthermore, immunoaffinity concentration was carried out allowing high sensitivity analysis of lower concentrations of ginsenoside Rb1 so that several unknown bands could be structurally determined.

Western blot (immunoblot) assay of small, round-structured virus associated with an acute gastroenteritis outbreak in Tokyo.

PubMed

Hayashi, Y; Ando, T; Utagawa, E; Sekine, S; Okada, S; Yabuuchi, K; Miki, T; Ohashi, M

1989-08-01

Small, round-structured virus (SRSV) was detected in a stool specimen of a patient during an acute gastroenteritis outbreak in Tokyo and was tentatively named SRSV-9. SRSV-9 was purified by sucrose velocity gradient centrifugation after CsCl density gradient centrifugation. The buoyant density of SRSV-9 appeared to be 1.36 g/ml in CsCl. A Western blot (immunoblot) assay using the biotin-avidin system revealed that SRSV-9 was antigenically related to the Hawaii agent but distinct from the Norwalk agent and contained a single major structural protein with a molecular size of 63.0 +/- 0.6 kilodaltons. The prevalence of SRSV-9 infection in Tokyo was surveyed by the Western blot antibody assay by using a crude virus preparation as the antigen. Seroconversion was observed in 56.5% of the patients involved in the outbreaks from which SRSV was detected by electron microscopy.

Seismic evidence for arc segmentation, active magmatic intrusions and syn-rift fault system in the northern Ryukyu volcanic arc

NASA Astrophysics Data System (ADS)

Arai, Ryuta; Kodaira, Shuichi; Takahashi, Tsutomu; Miura, Seiichi; Kaneda, Yoshiyuki

2018-04-01

Tectonic and volcanic structures of the northern Ryukyu arc are investigated on the basis of multichannel seismic (MCS) reflection data. The study area forms an active volcanic front in parallel to the non-volcanic island chain in the eastern margin of the Eurasian plate and has been undergoing regional extension on its back-arc side. We carried out a MCS reflection experiment along two across-arc lines, and one of the profiles was laid out across the Tokara Channel, a linear bathymetric depression which demarcates the northern and central Ryukyu arcs. The reflection image reveals that beneath this topographic valley there exists a 3-km-deep sedimentary basin atop the arc crust, suggesting that the arc segment boundary was formed by rapid and focused subsidence of the arc crust driven by the arc-parallel extension. Around the volcanic front, magmatic conduits represented by tubular transparent bodies in the reflection images are well developed within the shallow sediments and some of them are accompanied by small fragments of dipping seismic reflectors indicating intruded sills at their bottoms. The spatial distribution of the conduits may suggest that the arc volcanism has multiple active outlets on the seafloor which bifurcate at crustal depths and/or that the location of the volcanic front has been migrating trenchward over time. Further distant from the volcanic front toward the back-arc (> 30 km away), these volcanic features vanish, and alternatively wide rift basins become predominant where rapid transitions from normal-fault-dominant regions to strike-slip-fault-dominant regions occur. This spatial variation in faulting patterns indicates complex stress regimes associated with arc/back-arc rifting in the northern Okinawa Trough.[Figure not available: see fulltext.

The criminal use of improvised and re-activated firearms in Great Britain and Northern Ireland.

PubMed

Warlow, Thomas A

2007-11-01

Following the Hungerford Massacre the British Government imposed additional strict firearms legislation in 1988 that involved several classes of arms being placed into the prohibited category. By way of compensation a scheme was introduced to allow the unrestricted possession and transfer of the newly prohibited arms, other firearms and "prohibited weapons", if de-activated to a standard acceptable to the Secretary of State. Approved standards for firearm de-activation were drawn up in 1989. The inspection of the de-activated arms was devolved to the two Gun Barrel Proof Houses at London and Birmingham, as otherwise the task of inspecting the thousands of guns involved would have overloaded the firearms section at the Huntingdon Forensic Science Service Laboratory, who were already dealing with criminal firearms cases submitted by 41 of the 43 police forces throughout England and Wales, as well as providing technical assistance to the Home Office and Government Ministers. Members of the Gun Trade made representations to the Minister involved during the initial stages of setting up the official de-activation standards. This resulted in some measure of compromise in the range and nature of the de-activation requirements. Although it was clear that some individuals possessing the necessary skill and equipment might attempt to restore the odd weapon to a working condition, the scheme appeared to work reasonably well for the next few years. However, over the passage of time, criminal casework submissions to the Huntingdon Laboratory from industrial city areas along the M62 corridor of northern England revealed a steadily growing trend in the use of re-activated arms, which in a significant number of cases involved the use of fully automatic weapons. At first, the nature of the re-activation processes used to restore these arms was quite crude. However, with the passage of time a steady improvement in the machining and welding skills used by the some of the culprits

Pseudothionin-St1, a potato peptide active against potato pathogens.

PubMed

Moreno, M; Segura, A; García-Olmedo, F

1994-07-01

A 5-kDa polypeptide, pseudothionin Solanum tuberosum 1 (Pth-St1), which was active against Clavibacter michiganensis subspecies sepedonicus, a bacterial pathogen of potatoes, has been purified from the buffer-insoluble fraction of potato tubers by salt extraction and HPCL. Pth-St1 was also active against other potato pathogens tested (Pseudomonas solanacearum and Fusarium solani). The N-terminal amino acid sequence of this peptide was identical (except for a N/H substitution at position 2) to that deduced from a previously reported cDNA sequence (EMBL accession number X-13180), which had been misclassified as a Browman-Birk protease inhibitor. Pth-St1 did not inhibit either trypsin or insect alpha-amylase activities, and, in contrast with true thionins, did not affect cell-free protein synthesis or beta-glucuronidase activity. Northern-blot and tissue-print analyses showed that steady-state mRNA levels were highest in flowers (especially in petals), followed by tubers (especially in the epidermal cell layers and in leaf primordia), stems and leaves. Infection of leaves with a bacterial pathogen suspended in 10 mM MgCl2 switched off the gene, whereas mock inoculation with 10 mM MgCl2 alone induced higher mRNA levels.

From the Northern Eurasia Earth Science Partnership Initiative (NEESPI) towards the Northern Eurasia Future Initiative (NEFI)

NASA Astrophysics Data System (ADS)

Groisman, Pavel; Gutman, Garik; Gulev, Sergey; Maksyutov, Shamil

2015-04-01

Northern Eurasia Earth Science Partnership Initiative (NEESPI, http://neespi.org) was launched in 2004. With its multidisciplinary focus, the internationally funded NEESPI (more than 170 individual international projects during the past decade) has challenged participants to research climate-ecosystem interactions, societal impacts from extreme events in Northern Eurasia, and the feedbacks of these interactions and impacts to the global Earth system. NEESPI was endorsed by major ESSP Programs and Projects and the cornerstone support for the NEESPI studies was provided by the NASA Land Cover and Land Use Change Program and the Russian Academy of Sciences. Now it is the time to synthesis the main achievements of the NEESPI researchers and to re-assess its Science Questions and Objectives of the regional research within the new Future Earth Program paradigm with the focus on interdisciplinary solution-oriented approach that will allow effective policy-making in environment management and control. At the sequence of Workshops (the last of them will be in Prague one week prior to this Assembly) we formulated a major Science Question of the new Northern Eurasia Future Initiative (NEFI): "What will the changes in the regional ecosystems dynamics and interactions mean for the societal well-being, activities, health, and strategic planning in Northern Eurasia?" The major NEFI challenge will be the services aimed on providing in Northern Eurasia a sustainable societal development in changing climate, ecosystems, and societies. At this presentation we shall brief the audience about the main results of the NEESPI researchers, and lay down the plans for the future NEFI studies. At the side event of the Meeting, we shall initiate preparation of the book which will synthesize major NEESPI achievements.

Evaluation of the Western blotting method for the diagnosis of congenital toxoplasmosis.

PubMed

Capobiango, Jaqueline Dario; Monica, Thaís Cabral; Ferreira, Fernanda Pinto; Mitsuka-Breganó, Regina; Navarro, Italmar Teodorico; Garcia, João Luis; Reiche, Edna Maria Vissoci

To evaluate the Western blotting method for the detection of IgG anti-Toxoplasma gondii (T. gondii) (IgG-WB) in the serum of children with suspected congenital toxoplasmosis. We accompanied 47 mothers with acquired toxoplasmosis in pregnancy and their children, between June of 2011 and June of 2014. The IgG-WB was done in house and the test was considered positive if the child had antibodies that recognized at least one band on IgG blots different from the mother's or with greater intensity than the corresponding maternal band, during the first three months of life. 15 children (15.1%) met the criteria for congenital toxoplasmosis and 32 (32.3%) had the diagnosis excluded. The symptoms were observed in 12 (80.0%) children and the most frequent were cerebral calcification in 9 (60.0%), chorioretinitis in 8 (53.3%), and hydrocephalus in 4 (26.6%). IgM antibodies anti-T. gondii detected by chemiluminescence (CL) were found in 6 (40.0%) children and the polymerase chain reaction (PCR) for detection of T. gondii DNA was positive in 5 of 7 performed (71.4%). The sensitivity of IgG-WB was of 60.0% [95% confidence interval (CI) 32.3-83.7%] and specificity 43.7% (95% CI 26.7-62.3%). The sensitivity of IgG-WB increased to 76.0 and 89.1% when associated to the research of IgM anti-T. gondii or PCR, respectively. The IgG-WB showed greater sensitivity than the detection of IgM anti-T. gondii; therefore, it can be used for the diagnosis of congenital toxoplasmosis in association with other congenital infection markers. Copyright © 2016 Sociedade Brasileira de Pediatria. Published by Elsevier Editora Ltda. All rights reserved.

Structure of the active rift zone and margins of the northern Imperial Valley from Salton Seismic Imaging Project (SSIP) data

NASA Astrophysics Data System (ADS)

Livers, A.; Han, L.; Delph, J. R.; White-Gaynor, A. L.; Petit, R.; Hole, J. A.; Stock, J. M.; Fuis, G. S.

2012-12-01

First-arrival refraction data were used to create a seismic velocity model of the upper crust across the actively rifting northern Imperial Valley and its margins. The densely sampled seismic refraction data were acquired by the Salton Seismic Imaging Project (SSIP) , which is investigating rift processes in the northern-most rift segment of the Gulf of California extensional province and earthquake hazards at the southern end of the San Andreas Fault system. A 95-km long seismic line was acquired across the northern Imperial Valley, through the Salton Sea geothermal field, parallel to the five Salton Butte volcanoes and perpendicular to the Brawley Seismic Zone and major strike-slip faults. Nineteen explosive shots were recorded with 100 m seismometer spacing across the valley and with 300-500 m spacing into the adjacent ranges. First-arrival travel times were picked from shot gathers along this line and a seismic velocity model was produced using tomographic inversion. Sedimentary basement and seismic basement in the valley are interpreted to be sediment metamorphosed by the very high heat flow. The velocity model shows that this basement to the west of the Brawley Seismic Zone is at ~4-km depth. The basement shallows to ~2-km depth in the active geothermal field and Salton Buttes volcanic field which locally coincide with the Brawley Seismic Zone. At the eastern edge of the geothermal field, the basement drops off again to ~3.5-km depth. The eastern edge of the valley appears to be fault bounded by the along-strike extension of the Sand Hills Fault, an inactive strike-slip fault. The seismic velocities to the east of the fault correspond to metamorphic rock of the Chocolate Mountains, different from the metamorphosed basement in the valley. The western edge of the valley appears to be fault bounded by the active Superstition Hills Fault. To the west of the valley, >4-km deep valley basement extends to the active Superstition Hills Fault. Basement then shallows

Expression of retinoblastoma gene product (pRb) in mantle cell lymphomas. Correlation with cyclin D1 (PRAD1/CCND1) mRNA levels and proliferative activity.

PubMed Central

Jares, P.; Campo, E.; Pinyol, M.; Bosch, F.; Miquel, R.; Fernandez, P. L.; Sanchez-Beato, M.; Soler, F.; Perez-Losada, A.; Nayach, I.; Mallofré, C.; Piris, M. A.; Montserrat, E.; Cardesa, A.

1996-01-01

Mantle cell lymphomas (MCLs) are molecularly characterized by bcl-1 rearrangement and constant cyclin D1 (PRAD-1/CCND1) gene overexpression. Cyclin D1 is a G1 cyclin that participates in the control of the cell cycle progression by interacting with the retinoblastoma gene product (pRb). Inactivation of the Rb tumor suppressor gene has been implicated in the development of different types of human tumors including some high grade non-Hodgkin's lymphomas. To determine the role of the retinoblastoma gene in the pathogenesis of MCLs and its possible interaction with cyclin D1, pRb expression was examined in 23 MCLs including 17 typical and 6 blastic variants by immunohistochemistry and Western blot. Rb gene structure was studied in 13 cases by Southern blot. Cytogenetic analysis was performed in 5 cases. The results were compared with the cyclin D1 mRNA levels examined by Northern analysis, and the proliferative activity of the tumors was measured by Ki-67 growth fraction and flow cytometry. pRb was expressed in all MCLs. The expression varied from case to case (mean, 14.1% of positive cells; range, 1.3 to 42%) with a significant correlation with the proliferative activity of the tumors (mitotic index r = 0.85; Ki-67 r = 0.7; S phase = 0.73). Blastic variants showed higher numbers of pRb-positive cells (mean, 29%) than the typical cases (10%; P < 0.005) by immunohistochemistry and, concordantly, higher levels of expression by Western blot. In addition, the blastic cases also had an increased expression of the phosphorylated protein. No alterations in Rb gene structure were observed by Southern blot analysis. Cyclin D1 mRNA levels were independent of pRb expression and the proliferative activity of the tumors. These findings suggest that pRb in MCLs is normally regulated in relation to the proliferative activity of the tumors. Cyclin D1 overexpression may play a role in the maintenance of cell proliferation by overcoming the suppressive growth control of pRb. Images

Transcorneal electrical stimulation rescues axotomized retinal ganglion cells by activating endogenous retinal IGF-1 system.

PubMed

Morimoto, Takeshi; Miyoshi, Tomomitsu; Matsuda, Satoshi; Tano, Yasuo; Fujikado, Takashi; Fukuda, Yutaka

2005-06-01

To investigate the effect of transcorneal electrical stimulation (TES) on the survival of axotomized RGCs and the mechanism underlying the TES-induced neuroprotection in vivo. Adult male Wistar rats received TES after optic nerve (ON) transection. Seven days after the ON transection, the density of the surviving RGCs was determined, to evaluate the neuroprotective effect of TES. The levels of the mRNA and protein of insulin-like growth factor (IGF)-1 in the retina after TES were determined by RT-PCR and Northern and Western blot analyses. The localization of IGF-1 protein in the retina was examined by immunohistochemistry. TES after ON transection increased the survival of axotomized RGCs in vivo, and the degree of rescue depended on the strength of the electric charge. RT-PCR and Northern and Western blot analyses revealed a gradual upregulation of intrinsic IGF-1 in the retina after TES. Immunohistochemical analysis showed that IGF-1 immunoreactivity was localized initially in the endfeet of Muller cells and then diffused into the inner retina. TES can rescue the axotomized RGCs by increasing the level of IGF-1 production by Muller cells. These findings provide a new therapeutic approach to prevent or delay the degeneration of retinal neurons without the administration of exogenous neurotrophic factors.

Effects of clofibric acid on the activity and activity state of the hepatic branched-chain 2-oxo acid dehydrogenase complex.

PubMed Central

Zhao, Y; Jaskiewicz, J; Harris, R A

1992-01-01

Feeding clofibric acid to rats caused little or no change in total activity of the liver branched-chain 2-oxo acid dehydrogenase complex (BCODC). No change in mass of liver BCODC was detected by immunoblot analysis in response to dietary clofibric acid. No changes in abundance of mRNAs for the BCODC E1 alpha, E1 beta and E2 subunits were detected by Northern-blot analysis. Likewise, dietary clofibric acid had no effect on the activity state of liver BCODC (percentage of enzyme in the dephosphorylated, active, form) of rats fed on a chow diet. However, dietary clofibric acid greatly increased the activity state of liver BCODC of rats fed on a diet deficient in protein. No stable change in liver BCODC kinase activity was found in response to clofibric acid in either chow-fed or low-protein-fed rats. Clofibric acid had a biphasic effect on flux through BCODC in hepatocytes prepared from low-protein-fed rats. Stimulation of BCODC flux at low concentrations was due to clofibric acid inhibition of BCODC kinase, which in turn allowed activation of BCODC by BCODC phosphatase. Inhibition of BCODC flux at high concentrations was due to direct inhibition of BCODC by clofibric acid. The results suggest that the effects of clofibric acid in vivo on branched-chain amino acid metabolism can be explained by the inhibitory effects of this drug on BCODC kinase. Images Fig. 2. Fig. 3. PMID:1637295

77 FR 38793 - Northern Natural Gas Company; Notice of Intent To Prepare an Environmental Assessment for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-29

... Station near Skellytown, Carson County, Texas, to Northern's Spearman Compressor Station in Spearman... extends from Northern's Beaver Compressor Station near Beaver, Oklahoma, to its Mullinville Compressor Station near Mullinville, Kansas. Activities Northern would conduct related to the [[Page 38794...

Identification of recombinant human EPO variants in greyhound plasma and urine by ELISA, LC-MS/MS and western blotting: a comparative study.

PubMed

Timms, Mark; Steel, Rohan; Vine, John

2016-02-01

The recombinant human erythropoietins epoetin alfa (Eprex®), darbepoetin (Aranesp®) and methoxy polyethylene glycol-epoetin beta (Mircera®) were administered to greyhounds for 7, 10 and 14 days respectively. Blood and urine samples were collected and analysed for erythropoietin by ELISA, LC-MS/MS and western blotting. Limits of confirmation in plasma for western blotting and LC-MS/MS methods ranged from a low of 2.5mIU/mL, and closely matched the sensitivity of ELISA screening. Copyright © 2015 John Wiley & Sons, Ltd.

Validation of endothelin B receptor antibodies reveals two distinct receptor-related bands on Western blot.

PubMed

Barr, Travis P; Kornberg, Daniel; Montmayeur, Jean-Pierre; Long, Melinda; Reichheld, Stephen; Strichartz, Gary R

2015-01-01

Antibodies are important tools for the study of protein expression but are often used without full validation. In this study, we used Western blots to characterize antibodies targeted to the N or C terminal (NT or CT, respectively) and the second or third intracellular loop (IL2 or IL3, respectively) of the endothelin B receptor (ETB). The IL2-targeted antibody accurately detected endogenous ETB expression in rat brain and cultured rat astrocytes by labeling a 50-kDa band, the expected weight of full-length ETB. However, this antibody failed to detect transfected ETB in HEK293 cultures. In contrast, the NT-targeted antibody accurately detected endogenous ETB in rat astrocyte cultures and transfected ETB in HEK293 cultures by labeling a 37-kDa band but failed to detect endogenous ETB in rat brain. Bands detected by the CT- or IL3-targeted antibody were found to be unrelated to ETB. Our findings show that functional ETB can be detected at 50 or 37kDa on Western blot, with drastic differences in antibody affinity for these bands. The 37-kDa band likely reflects ETB processing, which appears to be dependent on cell type and/or culture condition. Copyright © 2014 Elsevier Inc. All rights reserved.

Barriers and facilitators to being physically active on a rural U.S. Northern Plains American Indian reservation.

PubMed

Jahns, Lisa; McDonald, Leander R; Wadsworth, Ann; Morin, Charles; Liu, Yan

2014-11-21

The objective of the present study was to identify barriers to and facilitators of physical activity among American Indian adults living on a rural, U.S. Northern Plains reservation using the nominal group technique (NGT). NGT is a method of data generation and interpretation that combines aspects of qualitative (free generation of responses) and quantitative (systematic ranking of responses) methodologies. Adults participated in one of two NGT sessions asking about either barriers to (n = 6), or facilitators of (n = 5), being physically active. Participants nominated and ranked 21 barriers and 18 facilitators. Barriers indicated lack of knowledge of how to fit physical activity into a daily schedule, work, caring for family members, and prioritizing sedentary pursuits. Other responses included environmental barriers such as lack of access and transportation to a gym, unsafe walking conditions, and inclement weather. Facilitators to following recommendations included knowledge of health benefits of physical activity and the perception of physical activity as enjoyable, including feeling good when working out. Environmental facilitators included being outdoors walking and biking as well as parks and exercise facilities. Responses provided direction for locally designed community-based programs to promote facilitators and decrease barriers to individual's engagement in physical activity.

Active tectonics of the Devils Mountain Fault and related structures, northern Puget Lowland and eastern Strait of Juan de Fuca region, Pacific Northwest

USGS Publications Warehouse

Johnson, Samuel Y.; Dadisman, Shawn V.; Mosher, David C.; Blakely, Richard J.; Childs, Jonathan R.

2001-01-01

Information from marine high-resolution and conventional seismic-reflection surveys, aeromagnetic mapping, coastal exposures of Pleistocene strata, and lithologic logs of water wells is used to assess the active tectonics of the northern Puget Lowland and eastern Strait of Juan de Fuca region of the Pacific Northwest. These data indicate that the Devils Mountain Fault and the newly recognized Strawberry Point and Utsalady Point faults are active structures and represent potential earthquake sources.

The modulation of Tibetan Plateau heating on the multi-scale northernmost margin activity of East Asia summer monsoon in northern China

NASA Astrophysics Data System (ADS)

Zhang, Jie; Liu, Chen; Chen, Haishan

2018-02-01

The northernmost margin of East Asian summer monsoon (EASM) could well reflect wet/dry climate variability in the EASM marginal zone (northern China). The study shows that EASM occurs in northern China from Meiyu period to midsummer, and it is also the advancing period of the northern margin of EASM (NMEASM) before the 43rd pentad. NMEASM activity exhibits multi-scale variability, at cycles of 2-3-yr, 4-6-yr and 9-12-yr, which respond not only to EASM intensity but also to westerly circulation anomaly, exhibiting the mid-latitude Eurasian waves and the high-latitude Eurasian teleconnection (EU) patterns. The positive anomalies of Silk Road pattern and EU pattern in recent two decades contribute to the enhanced west-ridge and east-trough anomaly around 120°E over northern China, leading to divergence of moisture flux and north wind anomaly, which is helpful for southward western pacific subtropical high (WPSH) and southward NMEASM. Negative Eurasian pattern along subtropical Jet leads to anticyclone anomaly over south of the Yangtze River, deep trough and north wind anomaly along the west coast of the subtropical Pacific, contributing to southward WPSH and NMEASM at the cycle of 4-6-yr. Remote forcing sources of these anomalous Eurasian waves include North Europe, north of Caspian Sea, Central Asia, Tibetan Plateau and the west of Lake Baikal; the south of Lake Baikal is a local forcing region. The Tibetan Plateau heating and snow cover could modulate Eurasian wave pattern at multi-scale, which could be used as prediction reference of multi-scale NMEASM.

A single-step simultaneous protein staining procedure for polyacrylamide gels and nitrocellulose membranes by Alta during western blot analysis.

PubMed

Pal, Jayanta K; Berwal, Sunil K; Soni, Rupali N

2012-01-01

A simple method for staining of proteins simultaneously on sodium dodecyl sulfate (SDS) polyacrylamide gels and nitrocellulose membranes by Alta during western blot analysis is described. A 5% solution of Alta, a commercially available cosmetic preparation, is added in the upper tank buffer during electrophoresis. On completion of electrophoresis, the gel is washed in distilled water and viewed on a white light plate and a transilluminator to photograph the protein profiles. The gel is processed for western blot transfer of proteins onto a nitrocellulose membrane, and upon completion, the protein profiles on the membrane are viewed and photographed as stated above. The membrane can then be processed for immunostaining as per the standard procedure. Thus, the staining procedure using Alta is simple, rapid (without any need of destaining), and cost-effective.

Fukushima derived radiocesium in subsistence-consumed northern fur seal and wild celery

DOE PAGES

Ruedig, Elizabeth; Duncan, Colleen; Dickerson, Bobette; ...

2015-11-28

In July 2014, our investigative team traveled to St. Paul Island, Alaska to measure concentrations of radiocesium in wild-caught food products, primarily northern fur seal (Callorhinus ursinus). The 2011 Fukushima Daiichi Nuclear Power Plant accident released radiocesium into the atmosphere and into the western Pacific Ocean; other investigators have detected Fukushima-derived radionuclides in a variety of marine products harvested off the western coast of North America. We tested two subsistence-consumed food products from St. Paul Island, Alaska for Fukushima-derived radionuclides: 54 northern fur seal, and nine putchki (wild celery, Angelica lucida) plants. Individual northern fur seal samples were below minimummore » detectable activity concentrations of 137Cs and 134Cs, but when composited, northern fur seal tissues tested positive for trace quantities of both isotopes. Radiocesium was detected at an activity concentration of 37.2 mBq 134Cs kg -1 f.w. (95% CI: 35.9–38.5) and 141.2 mBq 137Cs kg -1f.w. (95% CI: 135.5–146.8). The measured isotopic ratio, decay-corrected to the date of harvest, was 0.26 (95% CI: 0.25–0.28). The Fukushima nuclear accident released 134Cs and 137Cs in roughly equal quantities, but by the date of harvest in July 2014, this ratio was 0.2774, indicating that this population of seals has been exposed to small quantities of Fukushima-derived radiocesium. Activity concentrations of both 134Cs and 137Cs in putchki were below detection limits, even for composited samples. Northern fur seal is known to migrate between coastal Alaska and Japan and the trace 134Cs in northern fur seal tissue suggests that the population under study had been minimally exposed Fukushima-derived radionuclides. Despite this inference, the radionuclide quantities detected are small and no impact is expected as a result of the measured radiation exposure, either in northern fur seal or human populations consuming this species.« less

Fukushima derived radiocesium in subsistence-consumed northern fur seal and wild celery

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ruedig, Elizabeth; Duncan, Colleen; Dickerson, Bobette

In July 2014, our investigative team traveled to St. Paul Island, Alaska to measure concentrations of radiocesium in wild-caught food products, primarily northern fur seal (Callorhinus ursinus). The 2011 Fukushima Daiichi Nuclear Power Plant accident released radiocesium into the atmosphere and into the western Pacific Ocean; other investigators have detected Fukushima-derived radionuclides in a variety of marine products harvested off the western coast of North America. We tested two subsistence-consumed food products from St. Paul Island, Alaska for Fukushima-derived radionuclides: 54 northern fur seal, and nine putchki (wild celery, Angelica lucida) plants. Individual northern fur seal samples were below minimummore » detectable activity concentrations of 137Cs and 134Cs, but when composited, northern fur seal tissues tested positive for trace quantities of both isotopes. Radiocesium was detected at an activity concentration of 37.2 mBq 134Cs kg -1 f.w. (95% CI: 35.9–38.5) and 141.2 mBq 137Cs kg -1f.w. (95% CI: 135.5–146.8). The measured isotopic ratio, decay-corrected to the date of harvest, was 0.26 (95% CI: 0.25–0.28). The Fukushima nuclear accident released 134Cs and 137Cs in roughly equal quantities, but by the date of harvest in July 2014, this ratio was 0.2774, indicating that this population of seals has been exposed to small quantities of Fukushima-derived radiocesium. Activity concentrations of both 134Cs and 137Cs in putchki were below detection limits, even for composited samples. Northern fur seal is known to migrate between coastal Alaska and Japan and the trace 134Cs in northern fur seal tissue suggests that the population under study had been minimally exposed Fukushima-derived radionuclides. Despite this inference, the radionuclide quantities detected are small and no impact is expected as a result of the measured radiation exposure, either in northern fur seal or human populations consuming this species.« less

Fukushima derived radiocesium in subsistence-consumed northern fur seal and wild celery.

PubMed

Ruedig, Elizabeth; Duncan, Colleen; Dickerson, Bobette; Williams, Michael; Gelatt, Thomas; Bell, Justin; Johnson, Thomas E

2016-02-01

In July 2014, our investigative team traveled to St. Paul Island, Alaska to measure concentrations of radiocesium in wild-caught food products, primarily northern fur seal (Callorhinus ursinus). The 2011 Fukushima Daiichi Nuclear Power Plant accident released radiocesium into the atmosphere and into the western Pacific Ocean; other investigators have detected Fukushima-derived radionuclides in a variety of marine products harvested off the western coast of North America. We tested two subsistence-consumed food products from St. Paul Island, Alaska for Fukushima-derived radionuclides: 54 northern fur seal, and nine putchki (wild celery, Angelica lucida) plants. Individual northern fur seal samples were below minimum detectable activity concentrations of (137)Cs and (134)Cs, but when composited, northern fur seal tissues tested positive for trace quantities of both isotopes. Radiocesium was detected at an activity concentration of 37.2 mBq (134)Cs kg(-1) f.w. (95% CI: 35.9-38.5) and 141.2 mBq (137)Cs kg(-1) f.w. (95% CI: 135.5-146.8). The measured isotopic ratio, decay-corrected to the date of harvest, was 0.26 (95% CI: 0.25-0.28). The Fukushima nuclear accident released (134)Cs and (137)Cs in roughly equal quantities, but by the date of harvest in July 2014, this ratio was 0.2774, indicating that this population of seals has been exposed to small quantities of Fukushima-derived radiocesium. Activity concentrations of both (134)Cs and (137)Cs in putchki were below detection limits, even for composited samples. Northern fur seal is known to migrate between coastal Alaska and Japan and the trace (134)Cs in northern fur seal tissue suggests that the population under study had been minimally exposed Fukushima-derived radionuclides. Despite this inference, the radionuclide quantities detected are small and no impact is expected as a result of the measured radiation exposure, either in northern fur seal or human populations consuming this species. Published by Elsevier

Outdoor-sleeping and other night-time activities in northern Ghana: implications for residual transmission and malaria prevention.

PubMed

Monroe, April; Asamoah, Obed; Lam, Yukyan; Koenker, Hannah; Psychas, Paul; Lynch, Matthew; Ricotta, Emily; Hornston, Sureyya; Berman, Amanda; Harvey, Steven A

2015-01-28

Despite targeted indoor residual spraying (IRS) over a six-year period and free mass distribution of long-lasting insecticide-treated nets (ITNs), malaria rates in northern Ghana remain high. Outdoor sleeping and other night-time social, cultural and economic activities that increase exposure to infective mosquito bites are possible contributors. This study was designed to document these phenomena through direct observation, and to explore the context in which they occur. During the late dry season months of February and March 2014, study team members carried out continuous household observations from dusk to dawn in one village in Ghana's Northern Region and one in Upper West Region. In-depth interviews with health workers and community residents helped supplement observational findings. Study team members completed observations of 182 individuals across 24 households, 12 households per site. Between the two sites, they interviewed 14 health workers, six community health volunteers and 28 community residents. In early evening, nearly all study participants were observed to be outdoors and active. From 18.00-23.00 hours, socializing, night school, household chores, and small-scale economic activities were common. All-night funerals, held outdoors and attended by large numbers of community members, were commonly reported and observed. Outdoor sleeping was frequently documented at both study sites, with 42% of the study population sleeping outdoors at some time during the night. While interviewees mentioned bed net use as important to malaria prevention, observed use was low for both indoor and outdoor sleeping. Net access within households was 65%, but only 17% of those with access used a net at any time during the night. Participants cited heat as the primary barrier and reported higher net use during the rainy season. Outdoor sleeping and other night-time activities were extensive, and could significantly increase malaria risk. These findings suggest that indoor

Seasonal divergence in the interannual responses of Northern Hemisphere vegetation activity to variations in diurnal climate.

PubMed

Wu, Xiuchen; Liu, Hongyan; Li, Xiaoyan; Liang, Eryuan; Beck, Pieter S A; Huang, Yongmei

2016-01-11

Seasonal asymmetry in the interannual variations in the daytime and nighttime climate in the Northern Hemisphere (NH) is well documented, but its consequences for vegetation activity remain poorly understood. Here, we investigate the interannual responses of vegetation activity to variations of seasonal mean daytime and nighttime climate in NH (>30 °N) during the past decades using remote sensing retrievals, FLUXNET and tree ring data. Despite a generally significant and positive response of vegetation activity to seasonal mean maximum temperature (Tmax) in ~22-25% of the boreal (>50 °N) NH between spring and autumn, spring-summer progressive water limitations appear to decouple vegetation activity from the mean summer Tmax, particularly in climate zones with dry summers. Drought alleviation during autumn results in vegetation recovery from the marked warming-induced drought limitations observed in spring and summer across 24-26% of the temperate NH. Vegetation activity exhibits a pervasively negative correlation with the autumn mean minimum temperature, which is in contrast to the ambiguous patterns observed in spring and summer. Our findings provide new insights into how seasonal asymmetry in the interannual variations in the mean daytime and nighttime climate interacts with water limitations to produce spatiotemporally variable responses of vegetation growth.

Seasonal divergence in the interannual responses of Northern Hemisphere vegetation activity to variations in diurnal climate

PubMed Central

Wu, Xiuchen; Liu, Hongyan; Li, Xiaoyan; Liang, Eryuan; Beck, Pieter S. A.; Huang, Yongmei

2016-01-01

Seasonal asymmetry in the interannual variations in the daytime and nighttime climate in the Northern Hemisphere (NH) is well documented, but its consequences for vegetation activity remain poorly understood. Here, we investigate the interannual responses of vegetation activity to variations of seasonal mean daytime and nighttime climate in NH (>30 °N) during the past decades using remote sensing retrievals, FLUXNET and tree ring data. Despite a generally significant and positive response of vegetation activity to seasonal mean maximum temperature () in ~22–25% of the boreal (>50 °N) NH between spring and autumn, spring-summer progressive water limitations appear to decouple vegetation activity from the mean summer , particularly in climate zones with dry summers. Drought alleviation during autumn results in vegetation recovery from the marked warming-induced drought limitations observed in spring and summer across 24–26% of the temperate NH. Vegetation activity exhibits a pervasively negative correlation with the autumn mean minimum temperature, which is in contrast to the ambiguous patterns observed in spring and summer. Our findings provide new insights into how seasonal asymmetry in the interannual variations in the mean daytime and nighttime climate interacts with water limitations to produce spatiotemporally variable responses of vegetation growth. PMID:26751166

Correction of glucocerebrosidase deficiency after retroviral-mediated gene transfer into hematopoietic progenitor cells from patients with Gaucher disease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fink, J.K.; Correll, P.H.; Perry, L.K.

1990-03-01

Retroviral gene transfer has been used successfully to correct the glucocerebrosidase (GCase) deficiency in primary hematopoietic cells from patients with Gaucher disease. For this model of somatic gene therapy, the authors developed a high-titer, amphotropic retroviral vector designated NTG in which the human GCase gene was driven by the mutant polyoma virus enhancer/herpesvirus thymidine kinase gene (tk) promoter (Py{sup +}/Htk). NTG normalized GCase activity in transduced Gaucher fibroblasts and efficiently infected human monocytic and erythroleukemic cell lines. RNA blot-hybridization (Northern blot) analysis of these hemaptopoietic cell lines showed unexpectedly high-level expression from the Moloney murine leukemia virus long terminal repeatmore » (Mo-MLV LTR) and levels of Py{sup +}/Htk enhancer/promoter-initiated human GCase RNA that approximated endogenous GCase RNA levels. Furthermore, NTG efficiently infected human hematopoietic progenitor cells. Detection of the provirus in approximately one-third of NTG-infected progenitor colonies that had not been selected in G418-containing medium indicates that relative resistance to G418 underestimated the actual gene transfer efficiency. Northern blot analysis of NTG-infected, progenitor-derived cells showed expression from both the Mo-MLV LTR and the Py{sup +}/Htk enhancer/promoter. NTG-transduced hematopoietic progenitor cells from patients with Gaucher disease generated progeny in which GCase activity has been normalized.« less

Reappraisal of the relationship between the northern Nevada rift and Miocene extension in the northern Basin and Range Province

USGS Publications Warehouse

Colgan, Joseph P.

2013-01-01

The northern Nevada rift is a prominent mafic dike swarm and magnetic anomaly in north-central Nevada inferred to record the Middle Miocene (16.5-15.0 Ma) extension direction in the northern Basin and Range province in the western United States. From the 245°-250° rift direction, Basin and Range extension is inferred to have shifted 45° clockwise to a modern direction of 290°-300° during the late Miocene. The region surrounding the northern Nevada rift was actively extending while the rift formed, and these domains are all characterized by extension oriented 280°-300°. This direction is distinctly different from the rift direction and nearly identical to the modern Basin and Range direction. Although the rate, structural style, and distribution of Basin and Range extension appear to have undergone a significant change in the late Miocene (ca. 10 Ma), the overall spreading direction does not. Middle Miocene extension was directed perpendicular to the axis of the thickest crust formed during Mesozoic shortening and this orientation may reflect gravitational collapse of this thick crust. Orientation of northern Nevada rift dikes may reflect a short-lived regional stress field related to the onset of Yellowstone hotspot volcanism.

A false alarm based on electrical activity recorded at a VAN-Station in northern Greece in December 1990

NASA Astrophysics Data System (ADS)

Drakopoulos, John; Stavrakakis, George N.

A VAN-prediction was announced on January 6, 1991, through the French newspaper “Le Monde” and on January 8-10, 1991, through Greek newspapers and TV stations. We evaluate this prediction on the basis of a letter which was sent by Prof. Varotsos (without date) to the Greek Minister of Public Works, and by considering previous VAN-publications as well as recent seismological data for the candidate regions. We conclude that what was observed at ASS station (northern Greece) on December 31, 1990, was not SES-activity but another disturbance or noise.

Physical activity and cognition in the northern Manhattan study.

PubMed

Willey, Joshua Z; Park Moon, Yeseon; Ruder, Rachel; Cheung, Yuen K; Sacco, Ralph L; Elkind, Mitchell S V; Wright, Clinton B

2014-01-01

To test the hypothesis that leisure time physical activity (PA) is associated with cognitive status. We assessed cognition using the Mini-Mental Status Examination (MMSE) at enrollment and using the modified Telephone Interview for Cognitive Status (TICS-m) administered annually since 2001 in the Northern Manhattan Study. Baseline measures of leisure time PA were collected via in-person questionnaires. Total PA was categorized into 3 groups based on the metabolic equivalent (MET) score, a composite of total reported intensity and time. We used linear regression models to examine the association of PA with MMSE, and generalized estimating equations for change in TICS-m over time. There were 3,298 stroke-free participants with MMSE data (mean MMSE 26.0 ± 3.8) and 2,279 with TICS-m scores available. Compared to no PA, those with the upper quartile of MET scores had greater baseline MMSE scores (adjusted β = 0.4, p = 0.01) but no association with change in TICS-m over time. There were interactions (p < 0.05) between PA and both insurance and education; compared to no PA, those in the upper quartile of MET scores had a greater MMSE score only among those with Medicaid/no insurance (adjusted β = 0.83, p = 0.0005) and those who did not complete high school (adjusted β = 0.68, p = 0.001). Increased levels of PA were associated with better baseline MMSE, particularly among those with socioeconomic disadvantages, but not with cognitive decline. © 2013 S. Karger AG, Basel.

Molecular Basis of the Increase in Invertase Activity Elicited by Gravistimulation of Oat-Shoot Pulvini

NASA Technical Reports Server (NTRS)

Wu, Liu-Lai; Song, Il; Kim, Donghern; Kaufman, Peter B.

1993-01-01

An asymmetric (top vs. bottom) increase in invertase activity is elicited by gravistimulation in oatshoot pulvini starting within 3h after treatment. In order to analyze the regulation of invertase gene expression in this system, we examined the effect of gravistimulation on invertase mRNA induction. Total RNA and poly(A)(+)RNA, isolated from oat pulvini, and two oligonucleotide primers, corresponding to two conserved amino-acid sequences (NDPNG and WECPD) found in invertase from other species, were used for the Polymerase Chain Reaction (PCR). A partial-length cDNA (550 base pairs) was obtained and characterized. There was a 52 % deduced amino-acid sequence homology to that of carrot beta-fructosi- dase and a 48 % homology to that of tomato invertase. Northern blot analysis showed that there was an obvious transient accumulation of invertase mRNA elicited by gravistimulation of oat pulvini. The mRNA was rapidly induced to a maximum level at 1h following gravistimulation treatment and gradually decreased afterwards. The mRNA level in the bottom half of the oat pulvinus was significantly higher (five-fold) than that in the top half of the pulvinus tissue. The induction of invertase mRNA was consistent with the transient enhancement of invertase activity during the graviresponse of the pulvinus. These data indicate that the expression of the invertase gene(s) could be regulated by gravistimulation at the transcriptional and/or translational levels. Southern blot analysis showed that there were four genomic DNA fragments hybridized to the invertase cDNA. This suggests that an invertase gene family may exist in oat plants.

Model-Simulated Northern Winter Cyclone and Anticyclone Activity under a Greenhouse Warming Scenario.

NASA Astrophysics Data System (ADS)

Zhang, Yi; Wang, Wei-Chyung

1997-07-01

Two 100-yr equilibrium simulations from the NCAR Community Climate Model coupled to a nondynamic slab ocean are used to investigate the activity of northern winter extratropical cyclones and anticyclones under a greenhouse warming scenario. The first simulation uses the 1990 observed CO2, CH4, N2O, CFC-11, and CFC-12 concentrations, and the second adopts the year 2050 concentrations according to the Intergovernmental Panel on Climate Change business-as-usual scenario. Variables that describe the characteristic properties of the cyclone-scale eddies, such as surface cyclone and anticyclone frequency and the bandpassed root-mean-square of 500-hPa geopotential height, along with the Eady growth rate maximum, form a framework for the analysis of the cyclone and anticyclone activity.Objective criteria are developed for identifying cyclone and anticyclone occurrences based on the 1000-hPa geopotential height and vorticity fields and tested using ECMWF analyses. The potential changes of the eddy activity under the greenhouse warming climate are then examined. Results indicate that the activity of cyclone-scale eddies decreases under the greenhouse warming scenario. This is not only reflected in the surface cyclone and anticyclone frequency and in the bandpassed rms of 500-hPa geopotential height, but is also discerned from the Eady growth rate maximum. Based on the analysis, three different physical mechanisms responsible for the decreased eddy activity are discussed: 1) a decrease of the extratropical meridional temperature gradient from the surface to the midtroposphere, 2) a reduction in the land-sea thermal contrast in the east coastal regions of the Asian and North American continents, and 3) an increase in the eddy meridional latent heat fluxes. Uncertainties in the results related to the limitations of the model and the model equilibrium simulations are discussed.

Using the Landsat Thematic Mapper to detect and monitor active volcanoes - An example from Lascar volcano, northern Chile

NASA Technical Reports Server (NTRS)

Francis, P. W.; Rothery, D. A.

1987-01-01

The Landsat Thematic Mapper (TM) offers a means of detecting and monitoring thermal features of active volcanoes. Using the TM, a prominent thermal anomaly has been discovered on Lascar volcano, northern Chile. Data from two short-wavelength infrared channels of the TM show that material within a 300-m-diameter pit crater was at a temperature of at least 380 C on two dates in 1985. The thermal anomaly closely resembles in size and radiant temperature the anomaly over the active lava lake at Erta'ale in Ethiopia. An eruption took place at Lascar on Sept. 16, 1986. TM data acquired on Oct. 27, 1986, revealed significant changes within the crater area. Lascar is in a much more active state than any other volcano in the central Andes, and for this reason it merits further careful monitoring. Studies show that the TM is capable of confidently identifying thermal anomalies less than 100 m in size, at temperatures of above 150 C, and thus it offers a valuable means of monitoring the conditions of active or potentially active volcanoes, particularly those in remote regions.

Seasonal Dependence of Geomagnetic Active-Time Northern High-Latitude Upper Thermospheric Winds

NASA Astrophysics Data System (ADS)

Dhadly, Manbharat S.; Emmert, John T.; Drob, Douglas P.; Conde, Mark G.; Doornbos, Eelco; Shepherd, Gordon G.; Makela, Jonathan J.; Wu, Qian; Nieciejewski, Richard J.; Ridley, Aaron J.

2018-01-01

This study is focused on improving the poorly understood seasonal dependence of northern high-latitude F region thermospheric winds under active geomagnetic conditions. The gaps in our understanding of the dynamic high-latitude thermosphere are largely due to the sparseness of thermospheric wind measurements. With current observational facilities, it is infeasible to construct a synoptic picture of thermospheric winds, but enough data with wide spatial and temporal coverage have accumulated to construct a meaningful statistical analysis. We use long-term data from eight ground-based and two space-based instruments to derive climatological wind patterns as a function of magnetic local time, magnetic latitude, and season. These diverse data sets possess different geometries and different spatial and solar activity coverage. The major challenge is to combine these disparate data sets into a coherent picture while overcoming the sampling limitations and biases among them. In our previous study (focused on quiet time winds), we found bias in the Gravity Field and Steady State Ocean Circulation Explorer (GOCE) cross-track winds. Here we empirically quantify the GOCE bias and use it as a correction profile for removing apparent bias before empirical wind formulation. The assimilated wind patterns exhibit all major characteristics of high-latitude neutral circulation. The latitudinal extent of duskside circulation expands almost 10∘ from winter to summer. The dawnside circulation subsides from winter to summer. Disturbance winds derived from geomagnetic active and quiet winds show strong seasonal and latitudinal variability. Comparisons between wind patterns derived here and Disturbance Wind Model (DWM07) (which have no seasonal dependence) suggest that DWM07 is skewed toward summertime conditions.

A Western blot-based investigation of the yeast secretory pathway designed for an intermediate-level undergraduate cell biology laboratory.

PubMed

Hood-Degrenier, Jennifer K

2008-01-01

The movement of newly synthesized proteins through the endomembrane system of eukaryotic cells, often referred to generally as the secretory pathway, is a topic covered in most intermediate-level undergraduate cell biology courses. An article previously published in this journal described a laboratory exercise in which yeast mutants defective in two distinct steps of protein secretion were differentiated using a genetic reporter designed specifically to identify defects in the first step of the pathway, the insertion of proteins into the endoplasmic reticulum (Vallen, 2002). We have developed two versions of a Western blotting assay that serves as a second way of distinguishing the two secretory mutants, which we pair with the genetic assay in a 3-wk laboratory module. A quiz administered before and after students participated in the lab activities revealed significant postlab gains in their understanding of the secretory pathway and experimental techniques used to study it. A second survey administered at the end of the lab module assessed student perceptions of the efficacy of the lab activities; the results of this survey indicated that the experiments were successful in meeting a set of educational goals defined by the instructor.

TORC1 activity is partially reduced under nitrogen starvation conditions in sake yeast Kyokai no. 7, Saccharomyces cerevisiae.

PubMed

Nakazawa, Nobushige; Sato, Aya; Hosaka, Masahiro

2016-03-01

Industrial yeasts are generally unable to sporulate but treatment with the immunosuppressive drug rapamycin restores this ability in a sake yeast strain Kyokai no. 7 (K7), Saccharomyces cerevisiae. This finding suggests that TORC1 is active under sporulation conditions. Here, using a reporter gene assay, Northern and Western blots, we tried to gain insight into how TORC1 function under nitrogen starvation conditions in K7 cells. Similarly to a laboratory strain, RPS26A transcription was repressed and Npr1 was dephosphorylated in K7 cells, indicative of the expected loss of TORC1 function under nitrogen starvation. The expression of nitrogen catabolite repression-sensitive genes, however, was not induced, the level of Cln3 remained constant, and autophagy was more slowly induced than in a laboratory strain, all suggestive of active TORC1. We conclude that TORC1 activity is partially reduced under nitrogen starvation conditions in K7 cells. Copyright © 2015 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Northern forests, Chapter 7

Treesearch

L.H. Pardo; C.L. Goodale; E.A. Lilleskov; L.H. Geiser

2011-01-01

The Northern Forests ecological region spans much of Canada, from Saskatchewan to Newfoundland; its southern portion extends into the northern United States (CEC 1997). The U.S. component includes the northern hardwood and spruce-fir forest types and encompasses parts of the Northeast (mountainous regions in Pennsylvania, New York, New Jersey, Connecticut,...

Outbreak of larval Echinococcus multilocularis infection in Japanese monkey (Macaca fuscata) in a zoo, Hokkaido: western blotting patterns in the infected monkeys.

PubMed

Sato, Chiaki; Kawase, Shiro; Yano, Shoki; Nagano, Hideki; Fujimoto, Satoshi; Kobayashi, Nobuyuki; Miyahara, Kazuro; Yamada, Kazutaka; Sato, Motoyoshi; Kobayashi, Yoshiyasu

2005-01-01

A high prevalence of larval Echinococcus multilocularis (Em) infection was found in zoo primates in Hokkaido, Japan. In October 1997, a Japanese monkey (Macaca fuscata) died and histopathologically diagnosed as alveolar hydatidosis. Serum samples were collected from the remaining Japanese monkeys and examined for antibodies against Em by enzyme-linked immunosorbent assay and western blotting. Serological tests showed 12 more animals of the remaining 57 monkeys were possibly infected. Ultrasonography revealed that nine of these 12 animals had a cystic lesion in the liver. The band patterns of western blotting in the monkeys were very similar to those in human.

Activity, cloning, and expression of an isoamylase-type starch-debranching enzyme from banana fruit.

PubMed

Bierhals, Jacqueline Dettmann; Lajolo, Franco Maria; Cordenunsi, Beatriz Rosana; Oliveira do Nascimento, João Roberto

2004-12-01

Unripe bananas have a high content of starch (almost 20%) that is metabolized during fruit ripening with a concomitant synthesis of soluble sugars. Since starch granules are composed of amylose and amylopectin, several enzymes have to be involved in its mobilization during banana ripening, with a necessary participation of one starch-debranching enzyme (DBE) to hydrolyze the alpha-1,6-branches of amylopectin. Banana DBE seems to be an isoamylase-type enzyme, as indicated by substrate specificity and the cloning of a 1575 bp cDNA, similar to the isoamylase sequences from potato, Arabdopsis, and maize. The assays for DBE indicated only minor changes in activity during ripening, and the results of the northern and western blots with antiserum against the recombinant banana isoamylase were in agreement with the steady-state level of activity, since no significant changes in gene expression were observed. The high activity on beta-limit dextrin and the similarity to the potato isoform 3 suggest that during banana ripening the hydrolysis of alpha-1,6-linkage of amylopectin results from the activity of a pre-existing isoamylase-type debranching enzyme in coordination with other amylolitic enzymes. To the best of our knowledge, this is the first evaluation of activity and expression of a DBE from a fruit.

Barriers and Facilitators to Being Physically Active on a Rural U.S. Northern Plains American Indian Reservation

PubMed Central

Jahns, Lisa; McDonald, Leander R.; Wadsworth, Ann; Morin, Charles; Liu, Yan

2014-01-01

The objective of the present study was to identify barriers to and facilitators of physical activity among American Indian adults living on a rural, U.S. Northern Plains reservation using the nominal group technique (NGT). NGT is a method of data generation and interpretation that combines aspects of qualitative (free generation of responses) and quantitative (systematic ranking of responses) methodologies. Adults participated in one of two NGT sessions asking about either barriers to (n = 6), or facilitators of (n = 5), being physically active. Participants nominated and ranked 21 barriers and 18 facilitators. Barriers indicated lack of knowledge of how to fit physical activity into a daily schedule, work, caring for family members, and prioritizing sedentary pursuits. Other responses included environmental barriers such as lack of access and transportation to a gym, unsafe walking conditions, and inclement weather. Facilitators to following recommendations included knowledge of health benefits of physical activity and the perception of physical activity as enjoyable, including feeling good when working out. Environmental facilitators included being outdoors walking and biking as well as parks and exercise facilities. Responses provided direction for locally designed community-based programs to promote facilitators and decrease barriers to individual’s engagement in physical activity. PMID:25421064

Timely detection of localized excess influenza activity in Northern California across patient care, prescription, and laboratory data.

PubMed

Greene, Sharon K; Kulldorff, Martin; Huang, Jie; Brand, Richard J; Kleinman, Kenneth P; Hsu, John; Platt, Richard

2011-02-28

Timely detection of clusters of localized influenza activity in excess of background seasonal levels could improve situational awareness for public health officials and health systems. However, no single data type may capture influenza activity with optimal sensitivity, specificity, and timeliness, and it is unknown which data types could be most useful for surveillance. We compared the performance of 10 types of electronic clinical data for timely detection of influenza clusters throughout the 2007/08 influenza season in northern California. Kaiser Permanente Northern California generated zip code-specific daily episode counts for: influenza-like illness (ILI) diagnoses in ambulatory care (AC) and emergency departments (ED), both with and without regard to fever; hospital admissions and discharges for pneumonia and influenza; antiviral drugs dispensed (Rx); influenza laboratory tests ordered (Tests); and tests positive for influenza type A (FluA) and type B (FluB). Four credible events of localized excess illness were identified. Prospective surveillance was mimicked within each data stream using a space-time permutation scan statistic, analyzing only data available as of each day, to evaluate the ability and timeliness to detect the credible events. AC without fever and Tests signaled during all four events and, along with Rx, had the most timely signals. FluA had less timely signals. ED, hospitalizations, and FluB did not signal reliably. When fever was included in the ILI definition, signals were either delayed or missed. Although limited to one health plan, location, and year, these results can inform the choice of data streams for public health surveillance of influenza. Copyright © 2010 John Wiley & Sons, Ltd.

Activity and protein expression of the Na+/H+ exchanger is reduced in syncytiotrophoblast microvillous plasma membranes isolated from preterm intrauterine growth restriction pregnancies.

PubMed

Johansson, M; Glazier, J D; Sibley, C P; Jansson, T; Powell, T L

2002-12-01

Regulation of syncytiotrophoblast intracellular pH is critical to optimum enzymatic and transport functions of the placenta. Previous studies of Na(+)/H(+) exchanger (NHE) activity in the placenta from pregnancies complicated by intrauterine growth restriction (IUGR) have produced conflicting results. The possible role of altered placental pH regulation in the development of acidosis in some fetuses subjected to IUGR remains to be fully established. We investigated the activity and protein expression of the NHE in syncytiotrophoblast microvillous (MVM) plasma membranes isolated from preterm and term placentas obtained from uncomplicated and IUGR pregnancies. Western blotting showed that the expression of NHE isoforms 1, 2, and 3 was approximately 10-fold greater in MVM than in basal plasma membrane (BM). Immunohistochemistry localized NHE-1 and NHE-2 to MVM and BM and NHE-3 to the MVM, BM, and cytoplasm of the syncytiotrophoblast. NHE-1 expression in MVM from preterm IUGR placentas was reduced by 55%, compared with gestational age-matched controls (P < 0.05, n = 6 and n = 16, respectively), whereas NHE-1 expression was unaltered in term IUGR placentas (n = 8). The activity (amiloride-sensitive Na(+) uptake) of NHE in MVM from IUGR preterm placentas was reduced by 48% (P < 0.05, n = 6). In contrast, MVM NHE activity was unchanged in term IUGR (n = 7). Using Northern blotting, no difference could be demonstrated in NHE-1 mRNA expression between IUGR and control groups. The reduced activity and expression of NHE in MVM of preterm IUGR placentas may compromise placental function and may contribute to the development of fetal acidosis in preterm IUGR fetuses.

Total protein analysis as a reliable loading control for quantitative fluorescent Western blotting.

PubMed

Eaton, Samantha L; Roche, Sarah L; Llavero Hurtado, Maica; Oldknow, Karla J; Farquharson, Colin; Gillingwater, Thomas H; Wishart, Thomas M

2013-01-01

Western blotting has been a key technique for determining the relative expression of proteins within complex biological samples since the first publications in 1979. Recent developments in sensitive fluorescent labels, with truly quantifiable linear ranges and greater limits of detection, have allowed biologists to probe tissue specific pathways and processes with higher resolution than ever before. However, the application of quantitative Western blotting (QWB) to a range of healthy tissues and those from degenerative models has highlighted a problem with significant consequences for quantitative protein analysis: how can researchers conduct comparative expression analyses when many of the commonly used reference proteins (e.g. loading controls) are differentially expressed? Here we demonstrate that common controls, including actin and tubulin, are differentially expressed in tissues from a wide range of animal models of neurodegeneration. We highlight the prevalence of such alterations through examination of published "-omics" data, and demonstrate similar responses in sensitive QWB experiments. For example, QWB analysis of spinal cord from a murine model of Spinal Muscular Atrophy using an Odyssey scanner revealed that beta-actin expression was decreased by 19.3±2% compared to healthy littermate controls. Thus, normalising QWB data to β-actin in these circumstances could result in 'skewing' of all data by ∼20%. We further demonstrate that differential expression of commonly used loading controls was not restricted to the nervous system, but was also detectable across multiple tissues, including bone, fat and internal organs. Moreover, expression of these "control" proteins was not consistent between different portions of the same tissue, highlighting the importance of careful and consistent tissue sampling for QWB experiments. Finally, having illustrated the problem of selecting appropriate single protein loading controls, we demonstrate that normalisation

The northern annular mode in summer and its relation to solar activity variations in the GISS ModelE

NASA Astrophysics Data System (ADS)

Lee, Jae N.; Hameed, Sultan; Shindell, Drew T.

2008-03-01

The northern annular mode (NAM) has been successfully used in several studies to understand the variability of the winter atmosphere and its modulation by solar activity. The variability of summer circulation can also be described by the leading empirical orthogonal function (EOF) of geopotential heights. We compare the annular modes of the summer geopotential heights in the northern hemisphere stratosphere and troposphere in the Goddard Institute for Space Studies (GISS) ModelE with those in the National Centers for Environmental Prediction/National Center for Atmospheric Research (NCEP/NCAR) reanalysis. In the stratosphere, the summer NAM obtained from NCEP/NCAR reanalysis as well as from the ModelE simulations has the same sign throughout the northern hemisphere, but shows greater variability at low latitudes. The patterns in both analyses are consistent with the interpretation that low NAM conditions represent an enhancement of the seasonal difference between the summer and the annual averages of geopotential height, temperature and velocity distributions, while the reverse holds for high NAM conditions. Composite analysis of high and low NAM cases in both model and observation suggests that the summer stratosphere is more "summer-like" when the solar activity is near a maximum. This means that the zonal easterly wind flow is stronger and the temperature is higher than normal. Thus increased irradiance favors a low summer NAM. A quantitative comparison of the anti-correlation between the NAM and the solar forcing is presented in the model and in the observation, both of which show lower/higher NAM index in solar maximum/minimum conditions. The temperature fluctuations in simulated solar minimum conditions are greater than in solar maximum throughout the summer stratosphere. The summer NAM in the troposphere obtained from NCEP/NCAR reanalysis has a dipolar zonal structure with maximum variability over the Asian monsoon region. The corresponding EOF in ModelE has

Anti-RAINBOW dye-specific antibodies as universal tools for the visualization of prestained protein molecular weight markers in Western blot analysis.

PubMed

Schüchner, Stefan; Andorfer, Peter; Mudrak, Ingrid; Ogris, Egon

2016-08-17

Western blotting is one of the most widely used techniques in molecular biology and biochemistry. Prestained proteins are used as molecular weight standards in protein electrophoresis. In the chemiluminescent Western blot analysis, however, these colored protein markers are invisible leaving researchers with the unsatisfying situation that the signal for the protein of interest and the signal for the markers are not captured simultaneously and have to be merged in an error-prone step. To allow the simultaneous detection of marker proteins we generated monoclonal antibodies specific for the protein dyes. To elicit a dye rather than protein specific immune response we immunized mice sequentially with dye-carrier protein complexes, in which a new carrier protein was used for each subsequent immunization. Moreover, by sequentially immunizing with dye-carrier protein complexes, in which different but structurally related dyes were used, we could also generate an antibody, termed anti-RAINBOW, that cross-reacted even with structurally related dyes not used in the immunizations. Our novel antibodies represent convenient tools for the simultaneous Western blot detection of commercially available prestained marker proteins in combination with the detection of any specific protein of interest. These antibodies will render obsolete the anachronistic tradition of manually charting marker bands on film.

Anti-RAINBOW dye-specific antibodies as universal tools for the visualization of prestained protein molecular weight markers in Western blot analysis

PubMed Central

Schüchner, Stefan; Andorfer, Peter; Mudrak, Ingrid; Ogris, Egon

2016-01-01

Western blotting is one of the most widely used techniques in molecular biology and biochemistry. Prestained proteins are used as molecular weight standards in protein electrophoresis. In the chemiluminescent Western blot analysis, however, these colored protein markers are invisible leaving researchers with the unsatisfying situation that the signal for the protein of interest and the signal for the markers are not captured simultaneously and have to be merged in an error-prone step. To allow the simultaneous detection of marker proteins we generated monoclonal antibodies specific for the protein dyes. To elicit a dye rather than protein specific immune response we immunized mice sequentially with dye-carrier protein complexes, in which a new carrier protein was used for each subsequent immunization. Moreover, by sequentially immunizing with dye-carrier protein complexes, in which different but structurally related dyes were used, we could also generate an antibody, termed anti-RAINBOW, that cross-reacted even with structurally related dyes not used in the immunizations. Our novel antibodies represent convenient tools for the simultaneous Western blot detection of commercially available prestained marker proteins in combination with the detection of any specific protein of interest. These antibodies will render obsolete the anachronistic tradition of manually charting marker bands on film. PMID:27531616

Flow characteristics of rivers in northern Australia: Implications for development

NASA Astrophysics Data System (ADS)

Petheram, Cuan; McMahon, Thomas A.; Peel, Murray C.

2008-07-01

SummaryAnnual, monthly and daily streamflows from 99 unregulated rivers across northern Australia were analysed to assess the general surface water resources of the region and their implications for development. The potential for carry-over storages was assessed using the Gould-Dincer Gamma method, which utilises the mean, standard deviation, skewness and lag-one serial correlation coefficient of annual flows. Runs Analysis was used to describe the characteristics of drought in northern Australia and the potential for 'active' water harvesting was evaluated by Base Flow Separation, Flow Duration Curves and Spells Analysis. These parameters for northern Australia were compared with data from southern Australia and data for similar Köppen class from around the world. Notably, the variability and seasonality of annual streamflow across northern Australia were observed to be high compared with that of similar Köppen classes from the rest of the world (RoW). The high inter-annual variability of runoff means that carry-over storages in northern Australia will need to be considerably larger than for rivers from the RoW (assuming similar mean annual runoff, yield and reliability). For example, in the three major Köppen zones across the North, it was possible (theoretically) to only exploit approximately 33% (Köppen Aw; n = 6), 25% (Köppen BSh; n = 12) and 13% (Köppen BWh; n = 11) of mean annual streamflow (assuming a hypothetical storage size equal to the mean annual flow). Over 90% of north Australian rivers had a Base Flow Index of less than 0.4, 72% had negative annual lag-one autocorrelation values and in half the rivers sampled greater than 80% of the total flow occurred during the 3-month peak period. These data confirm that flow in the rivers of northern Australia is largely event driven and that the north Australian environment has limited natural storage capacity. Hence, there is relatively little opportunity in many northern rivers to actively harvest water

Mercury Enrichment in Sediments of the Coastal Area of Northern Latium, Italy.

PubMed

Scanu, Sergio; Piazzolla, Daniele; Frattarelli, Francesco Manfredi; Mancini, Emanuele; Tiralongo, Francesco; Brundo, Maria Violetta; Tibullo, Daniele; Pecoraro, Roberta; Copat, Chiara; Ferrante, Margherita; Marcelli, Marco

2016-05-01

The purpose of this study was to evaluate the extent of the Hg geochemical anomaly arising in the Amiata and Tolfa complex to the coastal area of northern Latium and to examine the possible influence on this area by the Mignone River, and by the small coastal basins, which are characterized by both previous mining activities and decades of past industrial impact. The results confirm the extension of the anomaly of concentrations of Hg in the coastal area of northern Latium, with the northern sector influenced by the contributions of the Fiora and Mignone Rivers and the southern sector influenced by the contributions of minor basins. The results show high values of the Adverse Effect Index throughout the considered area and highlight the need for further investigation in order to assess the impact of human activities on the present and past values of Hg in marine sediments.

The Keelung Submarine volcanoes and gas plumes in the nearshore of northern Taiwan

NASA Astrophysics Data System (ADS)

Huang, J. C.; Tsia, C. H.; Hsu, S. K.; Lin, S. S.

2016-12-01

Taiwan is located in the collision zone between Philippine Sea Plate and Eurasian Plate. The Philippine Sea Plate subducts northward beneath the Ryukyu arc system while the Eurasian Plate subducts eastward beneath the Luzon arc system. The Taiwan mountain building started at 9 My ago and the most active collision has migrated to middle Taiwan. In consequence, the northern Taiwan has changed its stress pattern from forms a series of thrust faults to normal faults. The stress pattern change has probably induced the post-collisional extension and volcanism in and off northern Taiwan. Under such a tectonic environment, the volcanism and gas plumes are widespread in northern Taiwan and its offshore area. Among the volcanoes of the northern Taiwan volcanic zone, the Tatun Volcano Group is the most obvious one. In this study, we use sub-bottom profiler, EK500 echo sounder, and multibeam echo sounder to study the geophysical structure of a submarine volcano in the nearshore of northern Taiwan. We have analyzed the shallow structures and identified the locations of the gas plumes. The identification of the gas plumes can help us understand the nature of the submarine volcano. Our results show that the gas plumes appear near the Kanchiao Fault and Keelung islet. Some intrusive volcanoes can be observed in the subbottom profiler data. Finally, according to the observations, we found that the Keelung Submarine Volcano is still active. We need the monitor of the active Keelung Submarine Volcano to avoid the volcanic hazard. Additionally, we need to pay attention to the earthquakes related to the Keelung Submarine Volcano.

Response of nesting northern goshawks to logging truck noise: Kaibab National Forest, Arizona

Treesearch

Teryl G. Grubb; Angela E. Gatto; Larry L. Pater; David K. Delaney

2012-01-01

The northern goshawk (Accipiter gentilis) is a pandemic species found across North America and Eurasia. The Kaibab Plateau on the Kaibab National Forest in northern Arizona supports one of the most concentrated populations of goshawks known in North America, averaging 43 active breeding areas per year until a 2001 drought reduced the subsequent number of nesting pairs...

An advanced dual labeled gold nanoparticles probe to detect Cryptosporidium parvum using rapid immuno-dot blot assay.

PubMed

Thiruppathiraja, Chinnasamy; Kamatchiammal, Senthilkumar; Adaikkappan, Periyakaruppan; Alagar, Muthukaruppan

2011-07-15

The zoonotic protozoan parasite Cryptosporidium parvum poses a significant risk to public health. Due to the low infectious dose of C. parvum, remarkably sensitive detection methods are required for water and food industries analysis. However PCR affirmed sensing method of the causative nucleic acid has numerous advantages, still criterion demands for simple techniques and expertise understanding to extinguish its routine use. In contrast, protein based immuno detecting techniques are simpler to perform by a commoner, but lack of sensitivity due to inadequate signal amplification. In this paper, we focused on the development of a mere sensitive immuno detection method by coupling anti-cyst antibody and alkaline phosphatase on gold nanoparticle for C. parvum is described. Outcome of the sensitivity in an immuno-dot blot assay detection is enhanced by 500 fold (using conventional method) and visually be able to detect up to 10 oocysts/mL with minimal processing period. Techniques reported in this paper substantiate the convenience of immuno-dot blot assay for the routine screening of C. parvum in water/environmental examines and most importantly, demonstrates the potential of a prototype development of simple and inexpensive diagnostic technique. Copyright © 2011 Elsevier B.V. All rights reserved.

Cy5 total protein normalization in Western blot analysis.

PubMed

Hagner-McWhirter, Åsa; Laurin, Ylva; Larsson, Anita; Bjerneld, Erik J; Rönn, Ola

2015-10-01

Western blotting is a widely used method for analyzing specific target proteins in complex protein samples. Housekeeping proteins are often used for normalization to correct for uneven sample loads, but these require careful validation since expression levels may vary with cell type and treatment. We present a new, more reliable method for normalization using Cy5-prelabeled total protein as a loading control. We used a prelabeling protocol based on Cy5 N-hydroxysuccinimide ester labeling that produces a linear signal response. We obtained a low coefficient of variation (CV) of 7% between the ratio of extracellular signal-regulated kinase (ERK1/2) target to Cy5 total protein control signals over the whole loading range from 2.5 to 20.0μg of Chinese hamster ovary cell lysate protein. Corresponding experiments using actin or tubulin as controls for normalization resulted in CVs of 13 and 18%, respectively. Glyceraldehyde-3-phosphate dehydrogenase did not produce a proportional signal and was not suitable for normalization in these cells. A comparison of ERK1/2 signals from labeled and unlabeled samples showed that Cy5 prelabeling did not affect antibody binding. By using total protein normalization we analyzed PP2A and Smad2/3 levels with high confidence. Copyright © 2015 Elsevier Inc. All rights reserved.

Parental leave and increased physical activity of fathers and mothers--results from the Northern Swedish Cohort.

PubMed

Johansson, Klara; Wennberg, Patrik; Hammarström, Anne

2014-12-01

Physical activity is an important public health issue. Factors shown to be associated with physical activity are parenthood and country-level gender equality, while the importance of individual gender equality (in parenthood or in general) remains to explore. In Scandinavia, where parental leave can be shared equally between mothers and fathers, parental leave is one dimension of gender equality in parenthood. The aim of this study was to investigate parental leave in relation to increased physical activity among men and women. Participants in the Northern Swedish Cohort with a child born 1993-2005 (n = 584) were investigated with questionnaires at ages 21 and 42; register data on parental leave between ages 28 and 42 were obtained from Statistics Sweden. The relationships between parental leave between ages 28 and 42 and meeting WHO guidelines for physical activity at age 42, as well as changes in physical activity between ages 21 and 42, were tested with multinomial regression, controlling for socio-economic status and birth year of the child. For women, the length of parental leave was not associated with increased physical activity or with meeting WHO guidelines at age 42. For men, parental leave was associated with increased physical activity, controlling for socio-economic status and age of the child, but not with meeting WHO guidelines for physical activity at age 42. A gender non-traditional out-take of parental leave might be associated with an increase in physical activity among men at the lower end of the physical activity spectrum, but not among women. © The Author 2014. Published by Oxford University Press on behalf of the European Public Health Association. All rights reserved.

Physical activity and sedentary lifestyle among children from private and public schools in Northern Brazil.

PubMed

Oliveira, Thiara Castro de; Silva, Antônio Augusto Moura da; Santos, Cristiane de Jesus Nunes dos; Silva, Josenilde Sousa e; Conceição, Sueli Ismael Oliveira da

2010-12-01

To analyze factors associated with physical activity and the mean time spent in some sedentary activities among school-aged children. A cross-sectional study was carried out in a random sample of 592 schoolchildren aged nine to 16 years in 2005, in São Luís, Northern Brazil. Data were collected by means of a 24-Hour Physical Activity Recall Questionnaire, concerning demographic and socioeconomic variables, physical activities practiced and time spent in certain sedentary activities. Physical activities were classified according to their metabolic equivalents (MET), and a physical activity index was estimated for each child. Sedentary lifestyle was estimated based on time spent watching television, playing videogames and on the computer/internet. Chi square test was used to compare proportions. Linear regression analysis was used to establish associations. Estimates were adjusted for the effect of the sampling design. The mean of the physical activity index was 605.73 MET-min/day (SD = 509.45). School children that were male (coefficient=134.57; 95%CI 50.77; 218.37), from public schools (coefficient.= 94.08; 95%CI 12.54; 175.62 and in the 5th to 7th grade (coefficient.=95.01; 95%CI 8.10;181.92 presented higher indices than females, children from private schools and in the 8th to the 9th grade (p<0.05). On average, students spent 2.66 hours/day in sedentary activities. Time spent in sedentary activities was significantly lower for children aged nine to 11 years (coefficient.= -0.49 hr/day; 95%CI -0.88; -0.10) and in lower socioeconomic classes (coefficient.=-0.87; 95%CI -1.45;-0.30). Domestic chores (59.43%) and walking to school (58.43%) were the most common physical activities. Being female, in private schools and in the 8th to 9th grade were factors associated with lower levels of physical activity. Younger schoolchildren and those from low economic classes spent less time engaged in sedentary activities.

Geologic map of the northern plains of Mars

USGS Publications Warehouse

Tanaka, Kenneth L.; Skinner, James A.; Hare, Trent M.

2005-01-01

The northern plains of Mars cover nearly a third of the planet and constitute the planet's broadest region of lowlands. Apparently formed early in Mars' history, the northern lowlands served as a repository both for sediments shed from the adjacent ancient highlands and for volcanic flows and deposits from sources within and near the lowlands. Geomorphic evidence for extensive tectonic deformation and reworking of surface materials through release of volatiles occurs throughout the northern plains. In the polar region, Planum Boreum contains evidence for the accumulation of ice and dust, and surrounding dune fields suggest widespread aeolian transport and erosion. The most recent regional- and global-scale maps describing the geology of the northern plains are largely based on Viking Orbiter image data (Dial, 1984; Witbeck and Underwood, 1984; Scott and Tanaka, 1986; Greeley and Guest, 1987; Tanaka and Scott, 1987; Tanaka and others, 1992a; Rotto and Tanaka, 1995; Crumpler and others, 2001; McGill, 2002). These maps reveal highland, plains, volcanic, and polar units based on morphologic character, albedo, and relative ages using local stratigraphic relations and crater counts. This geologic map of the northern plains is the first published map that covers a significant part of Mars using topography and image data from both the Mars Global Surveyor and Mars Odyssey missions. The new data provide a fresh perspective on the geology of the region that reveals many previously unrecognizable units, features, and temporal relations. In addition, we adapted and instituted terrestrial mapping methods and stratigraphic conventions that we think result in a clearer and more objective map. We focus on mapping with the intent of reconstructing the history of geologic activity within the northern plains, including deposition, volcanism, erosion, tectonism, impact cratering, and other processes with the aid of comprehensive crater-density determinations. Mapped areas include all

Titan's Stratospheric Condensibles at High Northern Latitudes During Northern Winter

NASA Technical Reports Server (NTRS)

Anderson, Carrie; Samuelson, R.; Achterberg, R.

2012-01-01

The Infrared Interferometer Spectrometer (IRIS) instrument on board Voyager 1 caught the first glimpse of an unidentified particulate feature in Titan's stratosphere that spectrally peaks at 221 per centimeter. Until recently, this feature that we have termed 'the haystack,' has been seen persistently at high northern latitudes with the Composite Infrared Spectrometer (CIRS) instrument onboard Cassini, The strength of the haystack emission feature diminishes rapidly with season, becoming drastically reduced at high northern latitudes, as Titan transitions from northern winter into spring, In contrast to IRIS whose shortest wavenumber was 200 per centimeter, CIRS extends down to 10 per centimeter, thus revealing an entirely unexplored spectral region in which nitrile ices have numerous broad lattice vibration features, Unlike the haystack, which is only found at high northern latitudes during northern winter/early northern spring, this geometrically thin nitrile cloud pervades Titan's lower stratosphere, spectrally peaking at 160 per centimeter, and is almost global in extent spanning latitudes 85 N to 600 S, The inference of nitrile ices are consistent with the highly restricted altitude ranges over which these features are observed, and appear to be dominated by a mixture of HCN and HC3N, The narrow range in altitude over which the nitrile ices extend is unlike the haystack, whose vertical distribution is significantly broader, spanning roughly 70 kilometers in altitude in Titan's lower stratosphere, The nitrile clouds that CIRS observes are located in a dynamically stable region of Titan's atmosphere, whereas CH4 clouds, which ordinarily form in the troposphere, form in a more dynamically unstable region, where convective cloud systems tend to occur. In the unusual situation where Titan's tropopause cools significantly from the HASI 70.5K temperature minimum, CH4 should condense in Titan's lower stratosphere, just like the aforementioned nitrile clouds, although

Multiple Landslide-Hazard Scenarios Modeled for the Oakland-Berkeley Area, Northern California

USGS Publications Warehouse

Pike, Richard J.; Graymer, Russell W.

2008-01-01

With the exception of Los Angeles, perhaps no urban area in the United States is more at risk from landsliding, triggered by either precipitation or earthquake, than the San Francisco Bay region of northern California. By January each year, seasonal winter storms usually bring moisture levels of San Francisco Bay region hillsides to the point of saturation, after which additional heavy rainfall may induce landslides of various types and levels of severity. In addition, movement at any time along one of several active faults in the area may generate an earthquake large enough to trigger landslides. The danger to life and property rises each year as local populations continue to expand and more hillsides are graded for development of residential housing and its supporting infrastructure. The chapters in the text consist of: *Introduction by Russell W. Graymer *Chapter 1 Rainfall Thresholds for Landslide Activity, San Francisco Bay Region, Northern California by Raymond C. Wilson *Chapter 2 Susceptibility to Deep-Seated Landsliding Modeled for the Oakland-Berkeley Area, Northern California by Richard J. Pike and Steven Sobieszczyk *Chapter 3 Susceptibility to Shallow Landsliding Modeled for the Oakland-Berkeley Area, Northern California by Kevin M. Schmidt and Steven Sobieszczyk *Chapter 4 Landslide Hazard Modeled for the Cities of Oakland, Piedmont, and Berkeley, Northern California, from a M=7.1 Scenario Earthquake on the Hayward Fault Zone by Scott B. Miles and David K. Keefer *Chapter 5 Synthesis of Landslide-Hazard Scenarios Modeled for the Oakland-Berkeley Area, Northern California by Richard J. Pike The plates consist of: *Plate 1 Susceptibility to Deep-Seated Landsliding Modeled for the Oakland-Berkeley Area, Northern California by Richard J. Pike, Russell W. Graymer, Sebastian Roberts, Naomi B. Kalman, and Steven Sobieszczyk *Plate 2 Susceptibility to Shallow Landsliding Modeled for the Oakland-Berkeley Area, Northern California by Kevin M. Schmidt and Steven

Climate impacts on northern Canada: regional background.

PubMed

Prowse, Terry D; Furgal, Chris; Bonsal, Barrie R; Peters, Daniel L

2009-07-01

Understanding the implications of climate change on northern Canada requires a background about the size and diversity of its human and biogeophysical systems. Occupying an area of almost 40% of Canada, with one-third of this contained in Arctic islands, Canada's northern territories consist of a diversity of physical environments unrivaled around the circumpolar north. Major ecozones composed of a range of landforms, climate, vegetation, and wildlife include: Arctic, boreal and taiga cordillera; boreal and taiga plains; taiga shield; and northern and southern Arctic. Although generally characterized by a cold climate, there is an enormous range in air temperature with mean annual values being as high as -5 degrees C in the south to as low as -20 degrees C in the high Arctic islands. A similar contrast characterizes precipitation, which can be > 700 mm y(-1) in some southern alpine regions to as low as 50 mm y(-1) over islands of the high Arctic. Major freshwater resources are found within most northern ecozones, varying from large glaciers or ice caps and lakes to extensive wetlands and peat lands. Most of the North's renewable water, however, is found within its major river networks and originates in more southerly headwaters. Ice covers characterize the freshwater systems for multiple months of the year while permafrost prevails in various forms, dominating the terrestrial landscape. The marine environment, which envelops the Canadian Arctic Archipelago, is dominated by seasonal to multiyear sea ice often several meters thick that plays a key role in the regional climate. Almost two-thirds of northern Canadian communities are located along coastlines with the entire population being just over 100 000. Most recent population growth has been dominated by an expansion of nonaboriginals, primarily the result of resource development and the growth of public administration. The economies of northern communities, however, remain quite mixed with traditional land

Application of a Dot Blot Hybridization Platform to Assess Streptococcus uberis Population Structure in Dairy Herds

PubMed Central

Albuquerque, Pedro; Ribeiro, Niza; Almeida, Alexandre; Panschin, Irena; Porfirio, Afonso; Vales, Marta; Diniz, Francisca; Madeira, Helena; Tavares, Fernando

2017-01-01

Streptococcus uberis is considered one of the most important pathogens associated with bovine mastitis. While traditionally acknowledged as an environmental pathogen, S. uberis has been shown to adopt a contagious epidemiological pattern in several dairy herds. Since different control strategies are employed depending on the mode of transmission, in-depth studies of S. uberis populations are essential to determine the best practices to control this pathogen. In this work, we optimized and validated a dot blot platform, combined with automatic image analysis, to rapidly assess the population structure of infective S. uberis, and evaluated its efficiency when compared to multilocus sequence analysis (MLSA) genotyping. Two dairy herds with prevalent S. uberis infections were followed in a 6 month period, in order to collect and characterize isolates from cows with persistent infections. These herds, located in Portugal (Barcelos and Maia regions), had similar management practices, with the herd from Barcelos being smaller and having a better milking parlor management, since infected cow segregation was immediate. A total of 54 S. uberis isolates were obtained from 24 different cows from the two herds. To overcome operator-dependent analysis of the dot blots and increase the technique's consistency and reliability, the hybridization signals were converted into probability values, with average probabilities higher than 0.5 being considered positive results. These data allowed to confirm the isolates' identity as S. uberis using taxa-specific markers and to determine the presence of virulence- and antibiotic resistance-related genes. In addition, MLSA allowed to disclose the most prevalent S. uberis clonal lineages in both herds. Seven different clusters were identified, with Barcelos showing a high clonal diversity and Maia a dominant lineage infecting most cows, suggesting distinct epidemiological patterns, with S. uberis displaying an environmental or contagious

Breeding colonies of least terns (Sternula antillarum) in northern Sonora, Mexico, 2006-2008

USGS Publications Warehouse

Rosemartin, Alyssa; van Riper, Charles

2012-01-01

We document distribution of breeding least terns (Sternula antillarum) in northern Sonora, Mexico, 2006-2008. We report breeding activity at six sites with active colonies, including three previously undocumented colonies.

Detection of Sleeping Beauty transposition in the genome of host cells by non-radioactive Southern blot analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aravalli, Rajagopal N., E-mail: aravalli@umn.edu; Park, Chang W.; Steer, Clifford J., E-mail: steer001@umn.edu

The Sleeping Beauty transposon (SB-Tn) system is being used widely as a DNA vector for the delivery of therapeutic transgenes, as well as a tool for the insertional mutagenesis in animal models. In order to accurately assess the insertional potential and properties related to the integration of SB it is essential to determine the copy number of SB-Tn in the host genome. Recently developed SB100X transposase has demonstrated an integration rate that was much higher than the original SB10 and that of other versions of hyperactive SB transposases, such as HSB3 or HSB17. In this study, we have constructed amore » series of SB vectors carrying either a DsRed or a human β-globin transgene that was encompassed by cHS4 insulator elements, and containing the SB100X transposase gene outside the SB-Tn unit within the same vector in cis configuration. These SB-Tn constructs were introduced into the K-562 erythroid cell line, and their presence in the genomes of host cells was analyzed by Southern blot analysis using non-radioactive probes. Many copies of SB-Tn insertions were detected in host cells regardless of transgene sequences or the presence of cHS4 insulator elements. Interestingly, the size difference of 2.4 kb between insulated SB and non-insulated controls did not reflect the proportional difference in copy numbers of inserted SB-Tns. We then attempted methylation-sensitive Southern blots to assess the potential influence of cHS4 insulator elements on the epigenetic modification of SB-Tn. Our results indicated that SB100X was able to integrate at multiple sites with the number of SB-Tn copies larger than 6 kb in size. In addition, the non-radioactive Southern blot protocols developed here will be useful to detect integrated SB-Tn copies in any mammalian cell type.« less

The MSX1 homeobox transcription factor is a downstream target of PHOX2B and activates the Delta-Notch pathway in neuroblastoma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Revet, Ingrid; Huizenga, Gerda; Chan, Alvin

Neuroblastoma is an embryonal tumour of the peripheral sympathetic nervous system (SNS). One of the master regulator genes for peripheral SNS differentiation, the homeobox transcription factor PHOX2B, is mutated in familiar and sporadic neuroblastomas. Here we report that inducible expression of PHOX2B in the neuroblastoma cell line SJNB-8 down-regulates MSX1, a homeobox gene important for embryonic neural crest development. Inducible expression of MSX1 in SJNB-8 caused inhibition of both cell proliferation and colony formation in soft agar. Affymetrix micro-array and Northern blot analysis demonstrated that MSX1 strongly up-regulated the Delta-Notch pathway genes DLK1, NOTCH3, and HEY1. In addition, the proneuralmore » gene NEUROD1 was down-regulated. Western blot analysis showed that MSX1 induction caused cleavage of the NOTCH3 protein to its activated form, further confirming activation of the Delta-Notch pathway. These experiments describe for the first time regulation of the Delta-Notch pathway by MSX1, and connect these genes to the PHOX2B oncogene, indicative of a role in neuroblastoma biology. Affymetrix micro-array analysis of a neuroblastic tumour series consisting of neuroblastomas and the more benign ganglioneuromas showed that MSX1, NOTCH3 and HEY1 are more highly expressed in ganglioneuromas. This suggests a block in differentiation of these tumours at distinct developmental stages or lineages.« less

Preliminary Geologic Map of Mount Pagan Volcano, Pagan Island, Commonwealth of the Northern Mariana Islands

USGS Publications Warehouse

Trusdell, Frank A.; Moore, Richard B.; Sako, Maurice K.

2006-01-01

Pagan Island is the subaerial portion of two adjoining Quaternary stratovolcanoes near the middle of the active Mariana Arc, [FAT1]north of Saipan. Pagan and the other volcanic islands that constitute part of the Arc form the northern half of the East Mariana Ridge[FAT2], which extends about 2-4 km above the ocean floor. The > 6-km-deep Mariana Trench adjoins the East Mariana Ridge on the east, and the Mariana Trough, partly filled with young lava flows and volcaniclastic sediment, lies on the west of the Northern Mariana Islands (East Mariana Ridge. The submarine West Mariana Ridge, Tertiary in age, bounds the western side of the Mariana Trough. The Mariana Trench and Northern Mariana Islands (East Mariana Ridge) overlie an active subduction zone where the Pacific Plate, moving northwest at about 10.3 cm/year, is passing beneath the Philippine Plate, moving west-northwest at 6.8 cm/year. Beneath the Northern Mariana Islands, earthquake hypocenters at depths of 50-250 km identify the location of the west-dipping subduction zone, which farther west becomes nearly vertical and extends to 700 km depth. During the past century, more than 40 earthquakes of magnitude 6.5-8.1 have shaken the Mariana Trench. The Mariana Islands form two sub-parallel, concentric, concave-west arcs. The southern islands comprise the outer arc and extend north from Guam to Farallon de Medinilla. They consist of Eocene to Miocene volcanic rocks and uplifted Tertiary and Quaternary limestone. The nine northern islands extend from Anatahan to Farallon de Pajaros and form part of the inner arc. The active inner arc extends south from Anatahan, where volcanoes, some of which are active, form seamounts west of the older outer arc. Other volcanic seamounts of the active arc surmount the East Mariana Ridge in the vicinity of Anatahan and Sarigan and north and south of Farallon de Pajaros. Six volcanoes (Farallon de Pajaros, Asuncion, Agrigan, Mount Pagan, Guguan, and Anatahan) in the northern islands

Northern Pintail

USGS Publications Warehouse

Clark, Robert G.; Fleskes, Joseph P.; Guyn, Karla L.; Haukos, David A.; Austin, Jane E.; Miller, Michael R.

2014-01-01

This medium-sized dabbling duck of slender, elegant lines and conservative plumage coloration is circumpolar in distribution and abundant in North America, with core nesting habitat in Alaska and the Prairie Pothole Region of southern Canada and the northern Great Plains. Breeders favor shallow wetlands interspersed throughout prairie grasslands or arctic tundra. An early fall migrant, the species arrives on wintering areas beginning in August, after wing molt, often forming large roosting and feeding flocks on open, shallow wetlands and flooded agricultural fields. The birds consume grains, marsh plant seeds, and aquatic invertebrates throughout fall and winter.Northern Pintails are among the earliest nesting ducks in North America, beginning shortly after ice-out in many northern areas. Individuals form new pair bonds each winter but are highly promiscuous during the nesting season, with mated and unmated males often involved in vigorous, acrobatic Pursuit Flights. Annual nest success and productivity vary with water conditions, predation, and weather. Females build nests on the ground, often far from water. Only the female incubates; her mate leaves shortly after incubation begins. Ducklings hatch together in one day, follow the female to water after a day in the nest, and fledge by July or August. Adults and ducklings consume mainly aquatic invertebrates during the breeding season.Predators and farming operations destroy many thousands of Northern Pintail nests annually; farming has also greatly reduced the amount of quality nesting cover available. Winter habitats are threatened by water shortages, agricultural development, contamination, and urbanization. Periods of extended drought in prairie nesting regions have caused dramatic population declines, usually followed by periods of recovery. Over the long term, however, the continental population of Northern Pintails has declined significantly from 6 million birds in the early 1970s to less than 3 million in

Avoiding pitfalls of internal controls: validation of reference genes for analysis by qRT-PCR and Western blot throughout rat retinal development.

PubMed

Rocha-Martins, Maurício; Njaine, Brian; Silveira, Mariana S

2012-01-01

Housekeeping genes have been commonly used as reference to normalize gene expression and protein content data because of its presumed constitutive expression. In this paper, we challenge the consensual idea that housekeeping genes are reliable controls for expression studies in the retina through the investigation of a panel of reference genes potentially suitable for analysis of different stages of retinal development. We applied statistical tools on combinations of retinal developmental stages to assess the most stable internal controls for quantitative RT-PCR (qRT-PCR). The stability of expression of seven putative reference genes (Actb, B2m, Gapdh, Hprt1, Mapk1, Ppia and Rn18s) was analyzed using geNorm, BestKeeper and Normfinder software. In addition, several housekeeping genes were tested as loading controls for Western blot in the same sample panel, using Image J. Overall, for qRT-PCR the combination of Gapdh and Mapk1 showed the highest stability for most experimental sets. Actb was downregulated in more mature stages, while Rn18s and Hprt1 showed the highest variability. We normalized the expression of cyclin D1 using various reference genes and demonstrated that spurious results may result from blind selection of internal controls. For Western blot significant variation could be seen among four putative internal controls (β-actin, cyclophilin b, α-tubulin and lamin A/C), while MAPK1 was stably expressed. Putative housekeeping genes exhibit significant variation in both mRNA and protein content during retinal development. Our results showed that distinct combinations of internal controls fit for each experimental set in the case of qRT-PCR and that MAPK1 is a reliable loading control for Western blot. The results indicate that biased study outcomes may follow the use of reference genes without prior validation for qRT-PCR and Western blot.

Weather and Large-Scale Dust Activity during Martian Northern Spring and Summer

NASA Astrophysics Data System (ADS)

Kass, David M.; Kleinboehl, Armin; McCleese, Daniel J.; Schofield, John Tim; Smith, Michael D.; Heavens, Nicholas

2016-10-01

Observations from MCS, TES and THEMIS now span the northern spring and summer seasons (Ls 0° to 180°) of 10 consecutive Mars Years (MY 24 through MY 33). These observations show very similar behavior each year. However, there are also noticeable differences and clear signs of inter-annual variability. To best study the three datasets, we examine zonal mean observations of the lower atmosphere (50 Pa, or ~25 km). This region was selected to provide the best quality from all three instruments. We separate the daytime (afternoon) and nighttime (early morning) data in the analysis.The climate at these seasons is dominated by the aphelion cloud belt, and 50 Pa is often close to the peak opacities in the clouds. There is also a strong diurnal thermal tide signature throughout the season at this altitude. The overall behavior is a rapid cooling at the start of the year (as the dust from the dusty season sediments out of the atmosphere) over the the first ~30° of Ls. The coldest temperatures then last until about the solstice and are followed by a slow warming trend through most of the rest of the season. The last ~30° prior to the fall equinox show a more rapid warming trend and significant inter-annual variability. In about half of the years, there is a warming event of the 50 Pa temperatures in the second half of northern summer. The warming is the signature of dust being lofted above the boundary layer, into the lower atmosphere. Due to the relatively clear atmosphere overall, even modest amounts of dust will create noticeable temperature changes. The temperature signature of the dust is more pronounced in the northern hemisphere.

Sea-floor gouges caused by migrating gray whales off northern California

USGS Publications Warehouse

Cacchione, D.A.; Drake, D.E.; Field, M.E.; Tate, G.B.

1987-01-01

Side-scan sonar records collected during March and April 1981 and 1982 off northern California contain elongate depressions whose sizes and shapes are similar to sea-floor gouges made by feeding gray whales (Eschrichtius robustus) in the northern Bering Sea and in shallow embayments off British Columbia. The discovery of the whale gouges in the sonar records was unexpected, and supports some of the previous speculation that gray whales feed opportunistically during migration. Gouges occupy about 0.032% of the 7.6 km2 of sea floor that was surveyed, which represents about 575 metric tons of excavated material. Although seemingly minor in amount, the total amount of bottom sediment removed from the central and northern California continental shelf by gray whale activities year after year represents macroscale biologically induced erosion and could have significant geological implications in shelf erosion and depositional schemes. This is the only published evidence of benthic feeding by gray whales along their migration route off northern California. ?? 1987.

An assessment of a Western blot method for the investigation of canine cutaneous adverse food reactions.

PubMed

Maina, Elisa; Matricoti, Irina; Noli, Chiara

2018-06-01

Adverse food reaction (AFR) is diagnosed with a two month elimination diet (ED), followed by challenge with the original food. To evaluate reactivity of selected EDs and performance of a Western blot serological test for the diagnosis of AFR. Twenty five food reactive (FR) and 13 non food reactive (NFR) privately owned dogs. Sera were tested for antibodies against hydrolyzed poultry feather (RCA), hydrolyzed soy (PHA), hydrolyzed fish (FUH), limited antigen horse and potato (THP), fresh horse meat and the offending food for each FR dog as documented by provocative challenge. Fourteen sera were negative and two positive to all foods. Sera from five of 13 NFR and three of 25 FR dogs were reactive to hydrolyzed foods. The RCA diet was recognized by four of 38, FUH by six of 38 and PHA by one of 28 samples. THP was recognized by 14 of 33 and fresh horse by one of ten dogs that had never eaten horse meat. The test correctly identified one of 15 dogs allergic to FUH. Twenty of 25 FR sera were negative for the dogs' respective offending foods (20% sensitivity), whereas four of 13 NFR sera were positive to the dogs' usual diets (69% specificity). Western blot analysis cannot be considered as a valid tool for the diagnosis of AFR; it may serve as an aid in selecting an ED. © 2018 ESVD and ACVD.

Smoke monitoring network on 2006 Northern California fires

Treesearch

Brenda Belongie; Suraj Ahuja

2007-01-01

Long-duration fire activity during the 2006 northern California fire season presented an excellent opportunity to create a temporary air-quality/smoke-monitoring network in the complex terrain across northwestern California. The network was established through cooperative interagency coordination of Federal officials, the California Air Resources Board (CARB), and...

Wildfires in Northern Siberian Larch Dominated Communities

NASA Technical Reports Server (NTRS)

Khaurk, Viacheslav I.; Ranson, Kenneth J.; Dvinskaya, Maria L.; Im, Sergey T.

2011-01-01

The fire history of the northern larch forests within the permafrost zone in a portion of northern Siberia (approx 66 deg N, 100 deg E) was studied. Since there is little to no human activities in this area fires within the study area were mostly caused by lightning. Fire return intervals (FRI) were estimated based on burn marks on tree stems and dates of tree natality. FRI values varied from 130 yr to 350 yr with 200 +/- 50 yr mean. In southerly larch dominated communities FRI was found to be shorter (77 +/- 20 yr at approx 61 deg. N, and 82 +/- 7 at 64 deg N), and longer at the northern boundary (approx 71 deg) of larch stands (320 +/- 50 yr). During the Little Ice Age period in the 16th to 18th centuries FRI was approximately twice as long as recorded in this study. Fire caused changes in the soil including increases in soil drainage and permafrost thawing depth and a radial growth increase of about 2 times (with more than 6 times observed). This effect may simulate the predicted warming impact on the larch growth in the permafrost zone.

Holocene faulting in the Bellingham forearc basin: upper-plate deformation at the northern end of the Cascadia subduction zone

USGS Publications Warehouse

Kelsey, Harvey M.; Sherrod, Brian L.; Blakely, Richard J.; Haugerud, Ralph A.

2013-01-01

The northern Cascadia forearc takes up most of the strain transmitted northward via the Oregon Coast block from the northward-migrating Sierra Nevada block. The north-south contractional strain in the forearc manifests in upper-plate faults active during the Holocene, the northern-most components of which are faults within the Bellingham Basin. The Bellingham Basin is the northern of four basins of the actively deforming northern Cascadia forearc. A set of Holocene faults, Drayton Harbor, Birch Bay, and Sandy Point faults, occur within the Bellingham Basin and can be traced from onshore to offshore using a combination of aeromagnetic lineaments, paleoseismic investigations and scarps identified using LiDAR imagery. With the recognition of such Holocene faults, the northernmost margin of the actively deforming Cascadia forearc extends 60 km north of the previously recognized limit of Holocene forearc deformation. Although to date no Holocene faults are recognized at the northern boundary of the Bellingham Basin, which is 15 km north of the international border, there is no compelling tectonic reason to expect that Holocene faults are limited to south of the international border.

Fatty acid composition of intramuscular fat and odour-active compounds of lamb commercialized in northern Spain.

PubMed

Bravo-Lamas, Leire; Barron, Luis J R; Farmer, Linda; Aldai, Noelia

2018-05-01

Muscle fatty acid composition and odour-active compounds released during cooking were characterized in lamb chops (Longissimus thoracis et lumborum, n = 48) collected at retail level in northern Spain. Lamb samples were classified in two groups according to their 10 t/11 t-18:1 ratio: ≤1 (10 t-non-shifted, n = 21) and >1 (10 t-shifted, n = 27). Higher n-3 polyunsaturated fatty acid, vaccenic (11 t-18:1) and rumenic acid (9c,11 t-18:2), and iso-branched chain fatty acid contents were found in non-shifted lamb samples while n-6 polyunsaturated fatty acid, internal methyl-branched chain fatty acid, and 10 t-18:1 contents were greater in shifted samples. Regardless the fatty acid profile differences between lamb sample groups, odour-active compound profile was very similar and mostly affected by the cooking conditions. Overall, the main odour-active compounds of cooked lamb were described as "green", "meaty", "roasted", and "fatty" being methyl pyrazine, methional, dimethyl pyrazine, and dimethyl trisulphide the main odour-active compounds. Aldehydes and alcohols were the most abundant volatiles in all samples, and they were mostly originated from the oxidation of unsaturated fatty acids during cooking. Copyright © 2018 Elsevier Ltd. All rights reserved.

Natural oil slicks fuel surface water microbial activities in the northern Gulf of Mexico

PubMed Central

Ziervogel, Kai; D'souza, Nigel; Sweet, Julia; Yan, Beizhan; Passow, Uta

2014-01-01

We conducted a series of roller tank incubations with surface seawater from the Green Canyon oil reservoir, northern Gulf of Mexico, amended with either a natural oil slick (GCS-oil) or pristine oil. The goal was to test whether bacterial activities of natural surface water communities facilitate the formation of oil-rich marine snow (oil snow). Although oil snow did not form during any of our experiments, we found specific bacterial metabolic responses to the addition of GCS-oil that profoundly affected carbon cycling within our 4-days incubations. Peptidase and β-glucosidase activities indicative of bacterial enzymatic hydrolysis of peptides and carbohydrates, respectively, were suppressed upon the addition of GCS-oil relative to the non-oil treatment, suggesting that ascending oil and gas initially inhibits bacterial metabolism in surface water. Biodegradation of physically dispersed GCS-oil components, indicated by the degradation of lower molecular weight n-alkanes as well as the rapid transformation of particulate oil-carbon (C: N >40) into the DOC pool, led to the production of carbohydrate- and peptide-rich degradation byproducts and bacterial metabolites such as transparent exopolymer particles (TEP). TEP formation was highest at day 4 in the presence of GCS-oil; in contrast, TEP levels in the non-oil treatment already peaked at day 2. Cell-specific enzymatic activities closely followed TEP concentrations in the presence and absence of GCS-oil. These results demonstrate that the formation of oil slicks and activities of oil-degrading bacteria result in a temporal offset of microbial cycling of organic matter, affecting food web interactions and carbon cycling in surface waters over cold seeps. PMID:24847314

Natural oil slicks fuel surface water microbial activities in the northern Gulf of Mexico.

PubMed

Ziervogel, Kai; D'Souza, Nigel; Sweet, Julia; Yan, Beizhan; Passow, Uta

2014-01-01

We conducted a series of roller tank incubations with surface seawater from the Green Canyon oil reservoir, northern Gulf of Mexico, amended with either a natural oil slick (GCS-oil) or pristine oil. The goal was to test whether bacterial activities of natural surface water communities facilitate the formation of oil-rich marine snow (oil snow). Although oil snow did not form during any of our experiments, we found specific bacterial metabolic responses to the addition of GCS-oil that profoundly affected carbon cycling within our 4-days incubations. Peptidase and β-glucosidase activities indicative of bacterial enzymatic hydrolysis of peptides and carbohydrates, respectively, were suppressed upon the addition of GCS-oil relative to the non-oil treatment, suggesting that ascending oil and gas initially inhibits bacterial metabolism in surface water. Biodegradation of physically dispersed GCS-oil components, indicated by the degradation of lower molecular weight n-alkanes as well as the rapid transformation of particulate oil-carbon (C: N >40) into the DOC pool, led to the production of carbohydrate- and peptide-rich degradation byproducts and bacterial metabolites such as transparent exopolymer particles (TEP). TEP formation was highest at day 4 in the presence of GCS-oil; in contrast, TEP levels in the non-oil treatment already peaked at day 2. Cell-specific enzymatic activities closely followed TEP concentrations in the presence and absence of GCS-oil. These results demonstrate that the formation of oil slicks and activities of oil-degrading bacteria result in a temporal offset of microbial cycling of organic matter, affecting food web interactions and carbon cycling in surface waters over cold seeps.

Detection of human papilloma virus 16 and 18 DNA sequences by southern blot hybridization in oral leukoplakia and squamous cell carcinoma.

PubMed

Khanna, Rahul; Rao, G R K; Tiwary, S K; Rai, Ashish; Khanna, Seema; Khanna, A K

2009-04-01

The etiopathological role of human papilloma virus (HPV) in the causation of oral cancer is till a subject of speculation. We used the technique of Southern blot hybridization to detect the presence of HPV types 16 & 18 in biopsy specimens from oral cancer and leukoplakia patients as well as normal oral mucosal biopsies. The prevalence of either HPV type 16 or 18 was found in 64.5% (29/45) of oral cancer, 40%(12/30) of leukoplakia and 20%(9/45) of normal oral mucosal biopsies. No association could be demonstrated between tobacco usage habits or a history of genital warts with HPV prevalence. A significant finding was that none of the oral cancer patients were negative for both: a history of tobacco usage as well as presence of HPV infection, on Southern blot hybridization.

Analysis of Chromatin Organisation

ERIC Educational Resources Information Center

Szeberenyi, Jozsef

2011-01-01

Terms to be familiar with before you start to solve the test: chromatin, nucleases, sucrose density gradient centrifugation, melting point, gel electrophoresis, ethidium bromide, autoradiography, Southern blotting, Northern blotting, Sanger sequencing, restriction endonucleases, exonucleases, linker DNA, chloroform extraction, nucleosomes,…

Regional Characteristics of Stress State of Main Seismic Active Faults in Mid-Northern Part of Sichuan-Yunnan Block

NASA Astrophysics Data System (ADS)

Weiwei, W.; Yaling, W.

2017-12-01

We restore the seismic source spectrums of 1012 earthquakes(2.0 ≤ ML ≤ 5.0) in the mid-northern part of Sichuan-Yunnan seismic block(26 ° N-33 ° N, 99 ° E-104 ° E),then calculate the source parameters.Based on the regional seismic tectonic background, the distribution of active faults and seismicity, the study area is divided into four statistical units (Z1 Jinshajiang and Litang fault zone, Z2 Xianshuihe fault zone, Z3 Anninghe-Zemuhe fault zone, Z4 Lijiang-Xiaojinhe fault zone). Seismic source stress drop results show the following, (1)The stress at the end of the Jinshajiang fault is low, strong earthquake activity rare.Stress-strain loading deceases gradually from northwest to southeast along Litang fault, the northwest section which is relatively locked is more likely to accumulate strain than southeast section. (2)Stress drop of Z2 is divided by Kangding, the southern section is low and northern section is high. Southern section (Kangding-Shimian) is difficult to accumulate higher strain in the short term, but in northern section (Garzê-Kangding), moderate and strong earthquakes have not filled the gaps of seismic moment release, there is still a high stress accumulation in partial section. (3)High stress-drop events were concentrated on Z3, strain accumulation of this unit is strong, and stress level is the highest, earthquake risk is high. (4)On Z4, stress drop characteristics of different magnitude earthquakes are not the same, which is related to complex tectonic setting, the specific reasons still need to be discussed deeply.The study also show that, (1)Stress drops display a systematic change with different faults and locations, high stress-drop events occurs mostly on the fault intersection area. Faults without locking condition and mainly creep, are mainly characterized by low stress drop. (2)Contrasting to what is commonly thought that "strike-slip faults are not easy to accumulate stress ", Z2 and Z3 all exhibit high stress levels, which

The impact of the school-based Psychosocial Structured Activities (PSSA) program on conflict-affected children in Northern Uganda.

PubMed

Ager, Alastair; Akesson, Bree; Stark, Lindsay; Flouri, Eirini; Okot, Braxton; McCollister, Faith; Boothby, Neil

2011-11-01

Children in northern Uganda have undergone significant psychosocial stress during the region's lengthy conflict. A Psychosocial Structured Activities (PSSA) program was implemented in 21 schools identified as amongst those most severely affected by conflict-induced displacement across Gulu and Amuru Districts. The PSSA intervention comprised a series of 15 class sessions designed to progressively increase children's resilience through structured activities involving drama, movement, music and art (with additional components addressing parental support and community involvement). Eight schools were selected by random quota sampling from those schools receiving the PSSA intervention. Two hundred and three children were identified in these schools as being scheduled to receive intervention, and were followed up 12 months later following engagement with PSSA activities. A comparison group comprised 200 children selected from schools that had met inclusion criteria for receipt of intervention, but were not scheduled for intervention coverage until later. Preliminary research used participatory focus group methodology to determine local indicators of child well-being as viewed by parents, teachers, and children respectively. Pre- and post- assessments focused on ratings for each child - by parents, teachers and children - with respect to these indicators. Significant increases in ratings of child well-being were observed in both intervention and comparison groups over a 12-month period. However, the well-being of children who had received the PSSA intervention increased significantly more than for children in the comparison group, as judged by child and parent (but not teacher) report. This effect was evident despite considerable loss-to-follow-up at post-testing as a result of return of many households to communities of origin. General improvement in child well-being over a 12-month period suggests that recovery and reconstruction efforts in Northern Uganda following

Contribution of a Comparative Western Blot Method to Early Postnatal Diagnosis of Congenital Syphilis.

PubMed

Marangoni, Antonella; Foschi, Claudio; Capretti, Maria Grazia; Nardini, Paola; Compri, Monica; Corvaglia, Luigi Tommaso; Faldella, Giacomo; Cevenini, Roberto

2016-05-01

Serology has a pivotal role in the diagnosis of congenital syphilis (CS), but problems arise because of the passive transfer of IgG antibodies across the placenta. The aim of this study was to assess the diagnostic value of a comparative Western blot (WB) method finalized to match the IgG immunological profiles of mothers and their own babies at birth in order to differentiate between passively transmitted maternal antibodies and antibodies synthesized by the infants against Treponema pallidum Thirty infants born to mothers with unknown or inadequate treatment for syphilis were entered in a retrospective study, conducted at St. Orsola-Malpighi Hospital, Bologna, Italy. All of the infants underwent clinical, instrumental, and laboratory examinations, including IgM WB testing. For the retrospective study, an IgG WB assay was performed by blotting T. pallidum antigens onto nitrocellulose sheets and incubating the strips with serum specimens from mother-child pairs. CS was diagnosed in 11 out of the 30 enrolled infants; 9/11 cases received the definitive diagnosis within the first week of life, whereas the remaining two were diagnosed later because of increasing serological test titers. The use of the comparative IgG WB testing performed with serum samples from mother-child pairs allowed a correct CS diagnosis in 10/11 cases. The CS diagnosis was improved by a strategy combining comparative IgG WB results with IgM WB results, leading to a sensitivity of 100%. The comparative IgG WB test is thus a welcome addition to the conventional laboratory methods used for CS diagnosis, allowing identification and adequate treatment of infected infants and avoiding unnecessary therapy of uninfected newborns. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Comparison of northern goshawk nesting habitat in Appalachian oak and northern hardwood forests of Pennsylvania

Treesearch

J.T. Kimmel; R.H. Yahner

1991-01-01

The Northern Goshawk (Accipiter gentilis) is a rare to uncommon woodland raptor in Pennsylvania. Although it is primarily a boreal species, the goshawk nests in Northern Hardwoods and Appalachian oak forests along the southern margin of its range in Pennsylvania. This study compared the nesting habitat of goshawks in Appalachian oak and Northern...

Regulation of an H-ras-related transcript by parathyroid hormone in rat osteosarcoma cells

NASA Technical Reports Server (NTRS)

Scott, D. K.; Weaver, W. R.; Clohisy, J. C.; Brakenhoff, K. D.; Kahn, A. J.; Partridge, N. C.

1992-01-01

The rat osteosarcoma cell line UMR 106-01 is a commonly used model system for the study of osteoblast function. However, it also expresses a phenotype characteristic of transformed cells. To test whether the latter could be accounted for by aberrant oncogene expression, we probed Northern blots of UMR and other osteoblastic cells with a panel of oncogene probes. These blots, when probed with a cDNA specific for v-H-ras, revealed a 7.0-kilobase (kb) H-ras-related transcript (designated HRRT) in UMR 106-01 cells that was not expressed in other osteoblastic cells. Osteoblast-enriched calvarial cells expressed the typical 1.1-kb H-ras mRNA, which was absent in UMR cells. Additionally, Western blots of lysates of UMR cells documented the presence of three proteins immunologically related to H-rasp21. To determine whether HRRT represented a recombinant retrovirus product, Northern blots were probed with a cDNA specific for the highly conserved gag-pol region of Moloney murine leukemia virus. These blots showed parallel cross-reactivity with an apparently identical transcript of 7.0 kb. The 7.0-kb transcripts detected by both v-H-ras and gag-pol probes declined to the same extent after treatment with concentrations of PTH known to inhibit proliferation of these cells. PTH regulated the abundance of HRRT in a time- and dose-dependent manner, with greatest repression of the transcript after 8 h of treatment with 10(-8) M PTH. The decrease in HRRT could not be completely accounted for by changes in transcriptional activity, as determined by nuclear run-on assays.(ABSTRACT TRUNCATED AT 250 WORDS).

Brucella species survey in polar bears (ursus maritimus) of northern Alaska.

PubMed

O'Hara, Todd M; Holcomb, Darce; Elzer, Philip; Estepp, Jessica; Perry, Quinesha; Hagius, Sue; Kirk, Cassandra

2010-07-01

We report on the presence of specific antibodies to Brucella spp. and Yersinia enterocolitica in polar bears (Ursus maritimus) from northern Alaska (southern Beaufort Sea) during 2003-2006. Based on numerous known stressors (e.g., climate change and loss of sea ice habitat, contaminants), there is increased concern regarding the status of polar bears. Considering these changes, it is important to assess exposure to potentially pathogenic organisms and to improve understanding of transmission pathways. Brucella or specific antibodies to Brucella spp. has been reported in marine mammals. Various assays were used to elucidate the pathway or source of exposure (e.g., "marine" vs. "terrestrial" Brucella spp.) of northern Alaska polar bears to Brucella spp. The standard plate test (SPT) and the buffered Brucella antigen card test (BBA) were used for initial screening for antibodies specific to Brucella. We then evaluated positive reactors (presence of serum antibody specific for Brucella spp.) using immunoblots and competitive enzyme-linked immunosorbent assay (cELISA; based on pinniped-derived Brucella spp. antigen). Annual prevalence of antibody (BBA and SPT) for Brucella spp. ranged from 6.8% to 18.5% over 2003-2006, with an overall prevalence of 10.2%. Prevalence of Brucella spp. antibody did vary by age class. Western blot analyses indicated 17 samples were positive for Brucella spp. antibody; of these, 13 were negative by marine (pinniped) derived Brucella antigen cELISA and four were positive by marine cELISA. Of the four samples positive for Brucella antibody by marine cELISA, three cross-reacted with Y. enterocolitica and Brucella spp. (one sample was Brucella negative and Y. enterocolitica positive). It appears the polar bear antibody does not react with the antigens used on the marine cELISA assay, potentially indicating a terrestrial (nonpinniped) source of Brucella spp.

Active Deformation of the Northern Cordillera Observed with GPS

NASA Astrophysics Data System (ADS)

Elliott, J.; Jiang, Y.; Leonard, L. J.; Hyndman, R. D.; Freymueller, J.; Mazzotti, S.

2017-12-01

The Northern Cordillera, which encompasses western Canada and eastern Alaska, is a complex tectonic puzzle. Past terrane accretions, the present collision of the Yakutat block, large-scale plate motions, and past and present glacier change have created a tectonic landscape that includes a major transform system, most of the highest peaks in North America, and far-flung ongoing distributed deformation. We present an updated GPS velocity field as well as a new integrated tectonic block model for the region. The style of deformation varies through the region. Surrounding the Yakutat collision, the model includes a number of small blocks that indicate rotations to the east, north, and west as material moves away from the collisional front. These small blocks also show evidence of internal deformation. Farther from the collisional front, blocks are larger and appear to behave more rigidly. In the south, northwestward motion resulting in a prominent band of coastal shear extends from Vancouver Island to Glacier Bay. In the Arctic, small southeastward motions in Alaska transition to easterly motion in Canada that extends to the Mackenize Mountains near the Cordillera-craton boundary. A number of faults and fault systems accommodate relative Pacific-North America plate motion in the region, although the significant majority is along the Fairweather-Queen Charlotte transform system and the St. Elias fold-and-thrust belt. Along the Fairweather-Queen Charlotte system, the motion is dominantly dextral with increasing oblique transpression to the south corresponding to a change in margin trend. At the northern end of the transform system, motion is distributed onto multiple faults. Roughly 75% of the Fairweather motion is transferred west into the St. Elias fold-and-thrust belt, which accommodates 30 mm/yr of convergence. The remaining 25% is transferred north towards the dextral Denali-Totschunda system. The eastern Denali fault presently plays a minor role in accommodating

Trophic ecology of largemouth bass and northern pike in allopatric and sympatric assemblages in northern boreal lakes

USGS Publications Warehouse

Soupir, Craig A.; Brown, Michael L.; Kallemeyn, Larry W.

2000-01-01

Largemouth bass (Micropterus salmoides) and northern pike (Esox lucius) are top predators in the food chain in most aquatic environments that they occupy; however, limited information exists on species interactions in the northern reaches of largemouth bass distribution. We investigated the seasonal food habits of allopatric and sympatric assemblages of largemouth bass and northern pike in six interior lakes within Voyageurs National Park, Minnesota. Percentages of empty stomachs were variable for largemouth bass (38-54%) and northern pike (34.7-66.7%). Fishes (mainly yellow perch, Perca flavescens) comprised greater than 60% (mean percent mass, MPM) of the northern pike diet during all seasons in both allopatric and sympatric assemblages. Aquatic insects (primarily Odonata and Hemiptera) were important in the diets of largemouth bass in all communities (0.0-79.7 MPM). Although largemouth bass were observed in the diet of northern pike, largemouth bass apparently did not prey on northern pike. Seasonal differences were observed in the proportion of aquatic insects (P = 0.010) and fishes (P = 0.023) in the diets of northern pike and largemouth bass. Based on three food categories, jackknifed classifications correctly classified 77 and 92% of northern pike and largemouth bass values, respectively. Percent resource overlap values were biologically significant (greater than 60%) during at least one season in each sympatric assemblage, suggesting some diet overlap.

High prevalence of human papillomavirus infection in American Indian women of the Northern Plains

PubMed Central

Bell, Maria C.; Schmidt-Grimminger, Delf; Patrick, Sarah; Ryschon, Tim; Linz, Laurie; Chauhan, Subhash C.

2008-01-01

Objectives Cervical cancer is the leading gynecological malignancy worldwide, and the incidence of this disease is very high in American Indian women. Infection with the Human Papillomavirus (HPV) is responsible for more than 95% of cervical squamous carcinomas. Therefore, the main objective of this study was to analyze oncogenic HPV infections in American Indian women residing in the Northern Plains. Methods Cervical samples were collected from 287 women attending a Northern Plains American Indian reservation outpatient clinic. DNA was extracted from the cervical samples and HPV specific DNA were amplified by polymerase chain reaction (PCR) using the L1 consensus primer sets. The PCR products were hybridized with the Roche HPV Line Blot assay for HPV genotyping to detect 27 different low and high-risk HPV genotypes. The chi-square test was performed for statistical analysis of the HPV infection and cytology diagnosis data. Results Of the total 287 patients, 61 women (21.25%) tested positive for HPV infection. Among all HPV-positive women, 41 (67.2%) were infected with high-risk HPV types. Of the HPV infected women, 41% presented with multiple HPV genotypes. Additionally, of the women infected with oncogenic HPV types, 20 (48.7%) were infected with HPV 16 and 18 and the remaining 21 (51.3%) were infected with other oncogenic types (i.e., HPV59, 39, 73). Women infected with oncogenic HPV types had significantly higher (p=0.001) abnormal Papanicolaou smear tests (Pap test) compared to women who were either HPV negative or positive for non-oncogenic HPV types. The incidence of HPV infection was inversely correlated (p<0.05) with the age of the patients, but there was no correlation (p=0.33) with seasonal variation. Conclusions In this study, we observed a high prevalence of HPV infection in American Indian women residing on Northern Plains Reservations. In addition, a significant proportion of the oncogenic HPV infections were other than HPV16 and 18. PMID:17659767

The Northern Manitoba Mining Academy

NASA Astrophysics Data System (ADS)

Alexandre, Paul

2017-04-01

The Northern Manitoba Mining Academy (NMMA, miningacademy.ca) is a new educational institution located in Flin Flon, Manitoba. It is associated with the University College of the North and is specifically intended to serve the needs of the Northern Manitoban communities with regards to job creation by providing training in a variety of mining, construction, and exploration related areas. NMMA's mission is to provide innovative and responsible solutions for the creation of a knowledgeable, skilled, and sustainable workforce within a vibrant, mineral-rich resource industry. It facilitates strategic training initiatives and research activities in order to strengthen the social, economic, and environmental benefits of a robust mining and resources sector. In terms of education, NMMA offers its own programs, mostly short courses in health and safety, courses organized by the University College of the North (wilderness safety, prospecting, and exploration), and courses organized in association with provincial Industries-Based Safety Programs and Associations (a variety of construction-related trades). However, the programming is not limited to those courses already on the syllabus: the Academy operates on open-doors policy and welcomes people with their unique and diverse needs; it prides itself in its ability to tailor or create specific on-demand courses and deliver them locally in the North. The Northern Manitoba Mining Academy also provides access to its world-class facilities for field-based undergraduate courses, as well as graduate students and researchers doing field work. Full sample preparation facilities are offered to students and scientists in all natural and environmental sciences.

University Patenting in Wales, Scotland and Northern Ireland: A Comparative Analysis

ERIC Educational Resources Information Center

Beale, Andrew; Blackaby, David; Mainwaring, Lynn

2008-01-01

Using data on the patent portfolios of UK universities, the paper compares the levels of patenting activity (filings), success (grants) and quality (patents with commercial co-assignees and patent citations) at Welsh, Scottish and Northern Irish institutions. Patent activity, per researcher, in Wales is on a par with that in Scotland and about…

Megafans of the Northern Kalahari Basin

NASA Technical Reports Server (NTRS)

Wilkinson, M. J.; Miller, R. McG.; Eckardt, F.; Kreslavsky, M. A.

2016-01-01

We identify eleven megafans (partial cones of fluvial sediment, >80 km radius) in the northern Kalahari Basin, using several criteria based on VIS and IR remotely sensed data and SRTM-based surface morphology reconstructions. Two other features meet fewer criteria of the form which we class as possible megafans. The northern Kalahari megafans are located in a 1700 km arc around the southern and eastern flanks of the Angola's Bié Plateau, from northern Namibia through northwest Botswana to western Zambia. Three lie in the Owambo subbasin centered on the Etosha Pan, three in the relatively small Okavango rift depression, and five in the Upper Zambezi basin. The population includes the well-known Okavango megafan (150 km), Namibia's Cubango megafan, the largest megafan in the region (350 km long), and the largest nested group (the five major contiguous megafans on the west slopes of the upper Zambezi Valley). We use new, SRTM-based topographic roughness data to discriminate various depositional surfaces within the flat N. Kalahari landscapes. We introduce the concepts of divide megafans, derived megafans, and fan-margin rivers. Conclusions. (i) Eleven megafan cones total an area of 190,000 sq km. (ii) Different controls on megafan size operate in the three component basins: in the Okavango rift structural controls become the prime constraint on megafan length by controlling basin dimensions. Megafans in the other les constricted basins appear to conform to classic relationships fan area, slope, and feeder-basin area. (iii) Active fans occupy the Okavango rift depression with one in the Owambo basin. The rest of the population are relict but recently active fans (surfaces are relict with respect to activity by the feeder river). (iv) Avulsive behavior of the formative river-axiomatic for the evolution of megafans-has resulted in repeated rearrangements of regional drainage, with likely effects in the study area well back into the Neogene. Divide megafans comprise the

Preparation of Gc protein-derived macrophage activating factor (GcMAF) and its structural characterization and biological activities.

PubMed

Mohamad, Saharuddin Bin; Nagasawa, Hideko; Uto, Yoshihiro; Hori, Hitoshi

2002-01-01

Gc protein has been reported to be a precursor of Gc protein-derived macrophage activation factor (GcMAF) in the inflammation-primed macrophage activation cascade. An inducible beta-galactosidase of B cells and neuraminidase of T cells convert Gc protein to GcMAF. Gc protein from human serum was purified using 25(OH)D3 affinity column chromatography and modified to GcMAF using immobilized glycosidases (beta-galactosidase and neuraminidase) The sugar moiety structure of GcMAF was characterized by lectin blotting by Helix pomatia agglutinin. The biological activities of GcMAF were evaluated by a superoxide generation assay and a phagocytosis assay. We successfully purified Gc protein from human serum. GcMAF was detected by lectin blotting and showed a high biological activity. Our results support the importance of the terminal N-acetylgalactosamine moiety in the GcMAF-mediated macrophage activation cascade, and the existence of constitutive GcMAF in human serum. These preliminary data are important for designing small molecular GcMAF mimics.

5′AMP-activated Protein Kinase Activity is Increased in Adipose Tissue of Northern Elephant Seal Pups during Prolonged Fasting-Induced Insulin Resistance

PubMed Central

Viscarra, Jose A.; Champagne, Cory D.; Crocker, Daniel E.; Ortiz, Rudy M.

2011-01-01

Northern elephant seals endure a 2–3 month fast characterized by sustained hyperglycemia, hypoinsulinemia and increased plasma cortisol and free fatty acids, conditions often seen in insulin resistant humans. We previously showed that adipose Glut4 expression and AMP kinase (AMPK) activity increase and plasma glucose decreases in fasting seals suggesting that AMPK activity contributes to glucose regulation during insulin resistant conditions. To address the hypothesis that AMPK activity increases during fasting-induced insulin resistance, we performed glucose tolerance tests (GTT) on early (n=5) and late (n=8) fasted seal pups and compared adipose tissue expression of insulin signaling proteins, PPARγ, and AMPK, in addition to plasma adiponectin, leptin, cortisol, insulin and non-esterified fatty acids (NEFA) levels. Fasting was associated with decreased glucose clearance, plasma insulin and adiponectin, and intracellular insulin signaling, as well as increased plasma cortisol and NEFAs, supporting the suggestion that seals develop insulin resistance late in the fast. Expression of Glut4 and VAMP2 increased (52% and 63%, respectively) with fasting but did not change significantly during the GTT. PPARγ and phosphorylated AMPK did not change in early fasted seals, but increased significantly (73% and 50%, respectively) in late fasted seals during the GTT. Increased AMPK activity along with the reduction in the activity of insulin-signaling proteins supports our hypothesis that AMPK activity is increased following the onset of insulin resistance. The association between increased AMPK activity and Glut4 expression suggests that AMPK plays a greater role in regulating glucose metabolism in mammals adapted to prolonged fasting than in non-fasting mammals. PMID:21429964

From underplating to delamination-retreat in the northern Apennines

NASA Astrophysics Data System (ADS)

Chiarabba, C.; Giacomuzzi, G.; Bianchi, I.; Agostinetti, N. P.; Park, J.

2014-10-01

Recordings of teleseismic earthquakes from a dense set of temporary and permanent broadband seismic stations reveal the lithospheric structure of the northern Apennines and support the scenario of a retreating detachment within the mid-crust. Lithospheric delamination appears crucial to the formation and evolution of the Apennines orogen. Receiver-function (RF) stacks outline a continuous west-dipping Ps converted phase from a positive velocity jump that we interpret as the top of the lower crust and mantle of the Adria continental lithosphere, which is descending into the shallow mantle. The correlation of seismicity with two RF profiles across the northern Apennines suggests distinct stages of lithospheric delamination. Active penetration of the detachment into the Adria lithosphere seems evident in the south/east, with induced shallow-mantle flow facilitated by slab dehydration. Penetration of the detachment in the north/west seems to have arrested, and is possibly marked by crustal underplating. This layer atop the Apennines slab is visible only down to 80 km depth and suspends above an oppositely-dipping paired positive/negative Ps converted phase in stacked receiver functions. The break in the west-dipping Adria lithosphere conflicts with a westward-subduction scenario continuous from the Oligocene. Lateral changes of deep structure and seismicity along the northern Apennines suggest that underplating of crustal material and delamination-retreat are distinct mechanisms active today in the western and eastern sectors, respectively, of the northern Apennines. Negative Ps-pulses at 100-120 km depth help to define a seismic lithosphere-asthenosphere boundary (LAB), but cross-cut a volume of high-velocity mantle rock, as inferred from tomographic models. We hypothesize that this seismic LAB is a rheological discontinuity that affects the frequency band of seismic body waves, but not the long-term viscous response that governs the evolution and eventual detachment

Analysis of immunostaining and western blotting of endothelin 1 and its receptors in mitral stenosis

PubMed Central

Leão, Sydney Correia; Dashwood, Michael R.; de Andrade, Mateus Santana; Santos, Nicolas Nascimento; Teles, Olivia Regina Lins Leal; de Souza, Williasmin Batista; Rodrigues, Tania Maria de Andrade

2015-01-01

Introduction Rheumatic Fever represents a serious public health problem in developing countries, with thousands of new cases each year. It is an autoimmune disease, which occurs in response to infection by streptococcus A. Objective The aim of this study was to evaluate the immunolabeling and protein expression for endothelin-1 and 3 (ET-1, ET-3) and its receptors (ETA, ETB) in rheumatic mitral valves. Methods Immunohistochemistry was used to identify ET-1/ET-3 and ETA/ETB receptors in rheumatic and control mitral valves. Quantitative analysis of immunostaining for ET-1/ET-3 and ETA/ETB receptors was performed. In addition, western blot analysis was carried out to assess protein levels in tissue samples. Results ET-1 and ETA receptor immunostaining predominated in stenotic valves, mainly associated with fibrotic regions, inflammatory areas and neovascularization. Quantitative analysis showed that the average area with positive expression of ET-1 was 18.21±14.96%. For ETA and ETB, the mean expressed areas were respectively 15.06±13.13% and 9.20±11.09%. ET-3 did not have a significant expression. The correlation between the expression of both endothelin receptors were strongly positive (R=0.74, P=0.02), but the correlation between ET-1 and its receptor were negative for both ETA (R=-0.37, P=0.25), and ETB (R=-0.14, P=0.39). This data was supported by western blot analysis. Conclusion The strong correlation between ET-1 and its receptors suggests that both play a role in the pathophysiology of rheumatic mitral valve stenosis and may potentially act as biomarkers of this disease. PMID:26107453

Changes in recreation values after fire in the northern Rocky Mountains

Treesearch

Flowers. Patrick J.; Henry J. Vaux; Philip D. Gardner; Thomas J. Mills

1985-01-01

Changes in recreation values after wildfire in the northern Rocky Mountains were determined by estimating the difference in the present net value of recreation activity with and without fire. To estimate the value of recreation activity at burned and unburned sites, a contingent market valuation approach was used. Hypothetical market transactions were created by...

The detection of hemorrhagic proteins in snake venoms using monoclonal antibodies against Virginia opossum (Didelphis virginiana) serum.

PubMed

Sánchez, E E; García, C; Pérez, J C; De La Zerda, S J

1998-10-01

Most snakes and a few warm-blooded animals have a resistance to snake venoms because of naturally occurring antihemorrhagins found in their sera. The antihemorrhagins in serum of Virginia opossum (Didelphis virginiana) neutralize hemorrhagic activity by binding to hemorrhagins in snake venoms. The binding characteristic of antihemorrhagins in D. virginiana serum was used to develop a five-step western blot. The detection of hemorrhagic proteins were measured indirectly with antihemorrhagins in Virginia opossum serum and with DV-2LD#2, a monoclonal antibody specific for Virginia opossum antihemorrhagins. Snake venoms were separated by native-PAGE, transferred to a Millipore Immobilon-P membrane and then incubated with crude Virginia opossum serum. The hemorrhagins in snake venom bind to antihemorrhagins in Virginia opossum serum which react with DV-2LD#2 a monoclonal antibody that is specific for Virginia opossum antihemorrhagins. DV-2LD#2 monoclonal antibody inhibits antihemorrhagic activity in Virginia opossum serum when mixed in equal amounts. The inhibition of antihemorrhagins by DV-2LD#2 monoclonal antibody suggests specificity. DV-2LD#2 monoclonal antibody does not recognize antihemorrhagins in gray woodrat (Neotoma micropus) serum. The five-step western blot reveals two well-defined bands which represent hemorrhagins found in Western diamondback rattlesnake (Crotalus atrox) venom. Venoms from 15 different snake species were examined to determine the usefulness of the five-step western blot. Other hemorrhagic venoms (Great Basin rattlesnake (C. viridis lutosus), Prairie rattlesnake (C. viridis viridis), Tancitaran dusky rattlesnake (C. pusillus), Northern Mojave rattlesnake (C. scutulatus scutulatus type B) and Northern Pacific rattlesnake (C. v. oreganus)) had one single band in the five-step western blot. DV-2LD#2 did not bind to the non-hemorrhagic venoms and reacted with 50% of the hemorrhagic venoms used in this study. The monoclonal antibody, CAH

Cloning and characterization of the human 5,10-methenyltetrahydrofolate synthetase-encoding cDNA.

PubMed

Dayan, A; Bertrand, R; Beauchemin, M; Chahla, D; Mamo, A; Filion, M; Skup, D; Massie, B; Jolivet, J

1995-11-20

Methenyltetrahydrofolate synthetase (MTHFS) catalyses the obligatory initial metabolic step in the intracellular conversion of 5-formyltetrahydrofolate to other reduced folates. We have isolated and sequenced a human MTHFS cDNA which is 872-bp long and codes for a 203-amino-acid protein of 23,229 Da. Escherichia coli BL21(DE3), transfected with pET11c plasmids containing an open reading frame encoding MTHFS, showed a 100-fold increase in MTHFS activity in bacterial extracts after IPTG induction. Northern blot studies of human tissues determined that the MTHFS mRNA was expressed preferentially in the liver and Southern blot analysis of human genomic DNA suggested the presence of a single-copy gene.

Glyceraldehyde-3-phosphate dehydrogenase: a universal internal control for Western blots in prokaryotic and eukaryotic cells.

PubMed

Wu, Yonghong; Wu, Min; He, Guowei; Zhang, Xiao; Li, Weiguang; Gao, Yan; Li, Zhihui; Wang, Zhaoyan; Zhang, Chenggang

2012-04-01

In the current study, we examined the expression level of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein in a number of organisms and the stability of GAPDH under various conditions. Our results revealed that GAPDH is present in multiple Escherichia coli strains, the yeast strain GS115, Caenorhabditis elegans, rat PC12 cells, and both mouse and rat brain. Furthermore, GAPDH was stably expressed under different concentrations of inducer and at different times of induction in E. coli (BL21) cells and yeast GS115 cells. Stable expression of GAPDH protein was also observed in C.elegans and PC12 cells that were treated with different concentrations of paraquat or sodium sulfite, respectively. In addition, we were able to detect and identify the endogenous gapA protein in E.coli via immunoprecipitation and MALDI-TOF-MS analysis. Endogenous gapA protein and exogenously expressed (subcloned) GAPDH proteins were detected in E. coli BL21 but not for gapC. With the exception of gapC in E. coli, the various isoforms of GAPDH possessed enzymatic activity. Finally, sequence analysis revealed that the GAPDH proteins were 76% identical, with the exception of E. coli gapC. Taken together, our results indicate that GAPDH could be universally used as an internal control for the Western blot analysis of prokaryotic and eukaryotic samples. Crown Copyright © 2012. Published by Elsevier Inc. All rights reserved.

Crustal anisotropy across northern Japan from receiver functions.

PubMed

Bianchi, I; Bokelmann, G; Shiomi, K

2015-07-01

Northern Japan is a tectonically active area, with the presence of several volcanoes, and with frequent earthquakes among which the destructive M w  = 8.9-9.0 Tohoku-oki occurred on 11 March 2011. Tectonic activity leaves an imprint on the crustal structures, on both the upper and the lower layers. To investigate the crust in northern Japan, we construct a receiver function data set using teleseismic events recorded at 58 seismic stations belonging to the Japanese National (Hi-net) network. We isolate the signals, in the receiver function wavelet, that witness the presence of anisotropic structures at depth, with the aim of mapping the variation of anisotropy across the northern part of the island. This study focuses on the relation among anisotropy detected in the crust, stresses induced by plate convergence across the subduction zone, and the intrinsic characteristics of the rocks. Our results show how a simple velocity model with two anisotropic layers reproduces the observed data at the stations. We observe a negligible or small amount of signal related to anisotropy in the eastern part of the study area (i.e., the outer arc) for both upper and lower crust. Distinct anisotropic features are observed at the stations on the western part of the study area (i.e., the inner arc) for both upper and lower crust. The symmetry axes are mostly E-W oriented. Deviation from the E-W orientation is observed close to the volcanic areas, where the higher geothermal gradient might influence the deformation processes.

A Comparative Analysis between GIMSS NDVIg and NDVI3g for Monitoring Vegetation Activity Change in the Northern Hemisphere during 1982-2008

DOE PAGES

Jiang, Nan; Zhu, Wenquan; Zheng, Zhoutao; ...

2013-08-12

The long-term Normalized Difference Vegetation Index (NDVI) time-series data set generated from the Advanced Very High Resolution Radiometers (AVHRR) has been widely used to monitor vegetation activity change. The third version of NDVI (NDVI3g) produced by the Global Inventory Modeling and Mapping Studies (GIMMS) group was released recently. The comparisons between the new and old versions should be conducted for linking existing studies with future applications of NDVI3g in monitoring vegetation activity change. Based on simple and piecewise linear regression methods, this research made a comparative analysis between NDVIg and NDVI3g for monitoring vegetation activity change and its responses tomore » climate change in the middle and high latitudes of the Northern Hemisphere during 1982–2008. Our results indicated that there were large differences between NDVIg and NDVI3g in the spatial patterns for both the overall changing trends and the timing of Turning Points (TP) in NDVI time series, which spread over almost the entire study region. The average NDVI trend from NDVI3g was almost twice as great as that from NDVIg and the detected average timing of TP from NDVI3g was about one year later. Although the general spatial patterns were consistent between two data sets for detecting the responses of growing-season NDVI to temperature and precipitation changes, there were large differences in the response magnitude, with a higher response magnitude to temperature in NDVI3g and an opposite response to precipitation change for the two data sets. Finally, these results demonstrated that the NDVIg data set may underestimate the vegetation activity change trend and its response to climate change in the middle and high latitudes of the Northern Hemisphere during the past three decades.« less

Asymmetric localization of natural antisense RNA of neuropeptide sensorin in Aplysia sensory neurons during aging and activity.

PubMed

Kadakkuzha, Beena M; Liu, Xin-An; Narvaez, Maria; Kaye, Alexandra; Akhmedov, Komolitdin; Puthanveettil, Sathyanarayanan V

2014-01-01

Despite the advances in our understanding of transcriptome, regulation and function of its non-coding components continue to be poorly understood. Here we searched for natural antisense transcript for sensorin (NAT-SRN), a neuropeptide expressed in the presynaptic sensory neurons of gill-withdrawal reflex of the marine snail Aplysia californica. Sensorin (SRN) has a key role in learning and long-term memory storage in Aplysia. We have now identified NAT-SRN in the central nervous system (CNS) and have confirmed its expression by northern blotting and fluorescent RNA in situ hybridization. Quantitative analysis of NAT-SRN in micro-dissected cell bodies and processes of sensory neurons suggest that NAT-SRN is present in the distal neuronal processes along with sense transcripts. Importantly, aging is associated with reduction in levels of NAT-SRN in sensory neuron processes. Furthermore, we find that forskolin, an activator of CREB signaling, differentially alters the distribution of SRN and NAT-SRN. These studies reveal novel insights into physiological regulation of natural antisense RNAs.

Lack of Active Onchocerca volvulus Transmission in the Northern Chiapas Focus of Mexico

PubMed Central

Rodríguez-Pérez, Mario A.; Unnasch, Thomas R.; Domínguez-Vázquez, Alfredo; Morales-Castro, Alba L.; Richards, Frank; Peña-Flores, Graciela P.; Orozco-Algarra, María Eugenia; Prado-Velasco, Gibert

2010-01-01

The northern Chiapas onchocerciasis focus has undergone 11 years of ivermectin mass treatment. No evidence of microfilariae in the cornea and/or anterior chamber of the eye or in skin snips was seen in residents examined in 2006 in two sentinel communities (upper limit of the 95% confidence interval [UL 95% CI] = 0.5% and 0.3%, respectively). In children 10 and under, 0 of 305 were found to harbor antibodies to Ov16, a marker of parasite exposure; 0 of 4,400 Simulium ochraceum s.l. collected in 2005 contained parasite DNA, giving an UL 95% CI for the infective rate of 0.9/2,000, and an UL 95% CI of the seasonal transmission potential of 1.2 L3/person. These data, assumed to be representative of the focus as a whole, suggest that there is no ongoing transmission of Onchocerca volvulus in the northern Chiapas focus. Community-wide treatments with ivermectin were halted in 2008, and a post-treatment surveillance phase was initiated. PMID:20595471

Outlook for outdoor recreation in the northern United States. A technical document supporting the Northern Forest Futures Project with projections through 2060

Treesearch

J.M. Bowker; Ashley E. Askew

2013-01-01

We develop projections of participation and use for 17 nature-based outdoor recreation activities through 2060 for the Northern United States. Similar to the 2010 Resources Planning Act (RPA) assessment, this report develops recreation projections under futures wherein population growth, socioeconomic conditions, land use changes, and climate are allowed to change over...

On the interannual oscillations in the northern temperate total ozone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krzyscin, J.W.

1994-07-01

The interannual variations in total ozone are studied using revised Dobson total ozone records (1961-1990) from 17 stations located within the latitude band 30 deg N - 60 deg N. To obtain the quasi-biennial oscillation (QBO), El Nino-Southern Oscillation (ENSO), and 11-year solar cycle manifestation in the `northern temperate` total ozone data, various multiple regression models are constructed by the least squares fitting to the observed ozone. The statistical relationships between the selected indices of the atmospheric variabilities and total ozone are described in the linear and nonlinear regression models. Nonlinear relationships to the predictor variables are found. That is,more » the total ozone variations are statistically modeled by nonlinear terms accounting for the coupling between QBO and ENSO, QBO and solar activity, and ENSO and solar activity. It is suggested that large reduction of total ozone values over the `northern temperate` region occurs in cold season when a strong ENSO warm event meets the west phase of the QBO during the period of high solar activity.« less

The Energetics of Transient Eddies in the Martian Northern Hemisphere

NASA Astrophysics Data System (ADS)

Battalio, Joseph Michael; Szunyogh, Istvan; Lemmon, Mark T.

2016-10-01

The energetics of northern hemisphere transient waves in the Mars Analysis Correction Data Assimilation is analyzed. Three periods between the fall and spring equinoxes (Ls=200°-230°, 255°-285°, and 330°-360°) during three Mars Years are selected to exemplify the fall, winter, and spring wave activity. Fall and spring eddy energetics is similar with some inter-annual and inter-seasonal variability, but winter eddy kinetic energy and its transport are strongly reduced in intensity as a result of the solsticial pause in eddy activity. Barotropic energy conversion acts as a sink of eddy kinetic energy throughout the northern hemisphere eddy period with little reduction in amplitude during the solsticial pause. Baroclinic energy conversion acts as a source in fall and spring but disappears during the winter period as a result of the stabilized vertical shear profile of the westerly jet around winter solstice.

Prediction of the optimum hybridization conditions of dot-blot-SNP analysis using estimated melting temperature of oligonucleotide probes.

PubMed

Shiokai, Sachiko; Kitashiba, Hiroyasu; Nishio, Takeshi

2010-08-01

Although the dot-blot-SNP technique is a simple cost-saving technique suitable for genotyping of many plant individuals, optimization of hybridization and washing conditions for each SNP marker requires much time and labor. For prediction of the optimum hybridization conditions for each probe, we compared T (m) values estimated from nucleotide sequences using the DINAMelt web server, measured T (m) values, and hybridization conditions yielding allele-specific signals. The estimated T (m) values were comparable to the measured T (m) values with small differences of less than 3 degrees C for most of the probes. There were differences of approximately 14 degrees C between the specific signal detection conditions and estimated T (m) values. Change of one level of SSC concentrations of 0.1, 0.2, 0.5, and 1.0x SSC corresponded to a difference of approximately 5 degrees C in optimum signal detection temperature. Increasing the sensitivity of signal detection by shortening the exposure time to X-ray film changed the optimum hybridization condition for specific signal detection. Addition of competitive oligonucleotides to the hybridization mixture increased the suitable hybridization conditions by 1.8. Based on these results, optimum hybridization conditions for newly produced dot-blot-SNP markers will become predictable.

Subsurface Constraints on Late Cenozoic Basin Geometry in Northern Fish Lake Valley and Displacement Transfer Along the Northern Fish Lake Valley Fault Zone, Western Nevada

NASA Astrophysics Data System (ADS)

Mueller, N.; Kerstetter, S. R.; Katopody, D. T.; Oldow, J. S.

2016-12-01

The NW-striking, right-oblique Fish Lake Valley fault zone (FLVFZ) forms the northern segment of the longest active structure in the western Great Basin; the Death Valley - Furnace Creek - Fish Lake Valley fault system. Since the mid-Miocene, 50 km of right-lateral displacement is documented on the southern FLVFZ and much of that displacement was and is transferred east and north on active WNW left-lateral faults. Prior to the Pliocene, displacement was transferred east and north on a low-angle detachment. Displacement on the northern part of the FLVFZ continues and is transferred to a fanned array of splays striking (west to east) WNW, NNW, ENE and NNE. To determine the displacement budget on these structures, we conducted a gravity survey to determine subsurface basin morphology and its relation to active faults. Over 2450 stations were collected and combined with existing PACES and proprietary data for a total of 3388 stations. The data were terrain corrected and reduced to a 2.67 g/cm3 density to produce a residual complete Bouguer anomaly. The eastern part of northern Fish Lake Valley is underlain by several prominent gravity lows forming several sub-basins with maximum RCBA values ranging from -24 to -28 mGals. The RCBA was inverted for depth using Geosoft Oasis Montaj GM-SYS 3D modeling software. Density values for the inversion were constrained by lithologic and density logs from wells that penetrate the entire Cenozoic section into the Paleozoic basement. Best fitting gravity measurements taken at the wellheads yielded an effective density of 2.4 g/cm3 for the basin fill. Modeled basement depths range between 2.1 to 3 km. The sub-basins form an arc opening to the NW and are bounded by ENE and NNE faults in the south and NS to NNW in the north. At the northern end of the valley, the faults merge with ENE left-lateral strike slip faults of the Mina deflection, which carries displacement to NW dextral strike-slip faults of the central Walker Lane.

Bacterial Abundance and Activity across Sites within Two Northern Wisconsin Sphagnum Bogs.

PubMed

Fisher; Graham; Graham

1998-11-01

Abstract Bacterial abundance, temperature, pH, and dissolved organic carbon (DOC) concentration were compared across surface sites within and between two northern Wisconsin Sphagnum peatlands over the summer seasons in 1995 and 1996. Sites of interest were the Sphagnum mat surface, the water-filled moat (lagg) at the bog margin, and the bog lake littoral zone. Significant differences in both bacterial populations and water chemistry were observed between sites. pH was highest in the lake and lowest in the mat at both bogs; the opposite was true for DOC. Large populations of bacteria were present in surface interstitial water from the mat; abundance in this site was consistently higher than in the moat or lake. Bacterial abundance also increased across sites of increasing DOC concentration and declining pH. Bacterial activities (rates of [3H]leucine incorporation) and growth in dilution cultures (with grazers removed) were also assessed in lake, moat, and mat sites. Results using these measures generally supported the trends observed in abundance, although high rates of [3H]leucine incorporation were recorded in the moat at one of the bogs. Our results indicate that bacterial populations in Sphagnum peatlands are not adversely affected by acidity, and that DOC may be more important than pH in determining bacterial abundance in these environments.

Trachoma Rapid Assessments in Unity and Northern Bahr-el-Ghazal States, Southern Sudan

PubMed Central

Robinson, Emily; Kur, Lucia W.; Ndyaba, Aggrey; Lado, Mounir; Shafi, Juma; Kabare, Emmanuel; McClelland, R. Scott; Kolaczinski, Jan H.

2010-01-01

Background Trachoma is thought to be endemic over large parts of Southern Sudan, but empirical evidence is limited. While some areas east of the Nile have been identified as highly endemic, few trachoma surveys have been conducted in the remainder of the country. This study aimed to determine whether trachoma constitutes a problem to public health in Northern Bahr-el-Ghazal and Unity State, both located west of the Nile. Methods and Principal Findings Trachoma rapid assessments (TRA) were conducted between July and September 2009. Seven villages in Northern Bahr-el-Ghazal State and 13 villages in Unity State were surveyed; an average of 50 children (age 1–9 years) and 44 women (age 15 years and above) were examined per village. Samples for analysis using the APTIMA Combo-2 nucleic acid amplification test (NAAT) were collected from participants with active trachoma in eight villages in Unity State. In Northern Bahr-el-Ghazal State, only three children with active trachoma (trachomatous inflammation follicular (TF) and/or trachomatous inflammation intense (TI)) and two women with trichiasis (TT) were found, in two of the seven villages surveyed. In Unity State, trachoma was endemic in all thirteen villages surveyed; the proportion of children with active trachoma ranged from 33% to 75% between villages, while TF in children ranged from 16% to 44%. Between 4% to 51% of examined women showed signs of TT. Samples from active trachoma cases tested using the NAAT were positive for Chlamydia trachomatis infection for 46.6% of children and 19.0% of women. Conclusions Trachoma presents a major problem to public health Unity State, while the disease is of low priority in Northern-Bahr-el-Ghazal State. Implementation of a population-based prevalence survey is now required in Unity State to generate baseline prevalence data so that trachoma interventions can be initiated and monitored over time. PMID:20957205

Trachoma rapid assessments in Unity and Northern Bahr-el-Ghazal States, Southern Sudan.

PubMed

Robinson, Emily; Kur, Lucia W; Ndyaba, Aggrey; Lado, Mounir; Shafi, Juma; Kabare, Emmanuel; McClelland, R Scott; Kolaczinski, Jan H

2010-10-01

Trachoma is thought to be endemic over large parts of Southern Sudan, but empirical evidence is limited. While some areas east of the Nile have been identified as highly endemic, few trachoma surveys have been conducted in the remainder of the country. This study aimed to determine whether trachoma constitutes a problem to public health in Northern Bahr-el-Ghazal and Unity State, both located west of the Nile. Trachoma rapid assessments (TRA) were conducted between July and September 2009. Seven villages in Northern Bahr-el-Ghazal State and 13 villages in Unity State were surveyed; an average of 50 children (age 1-9 years) and 44 women (age 15 years and above) were examined per village. Samples for analysis using the APTIMA Combo-2 nucleic acid amplification test (NAAT) were collected from participants with active trachoma in eight villages in Unity State. In Northern Bahr-el-Ghazal State, only three children with active trachoma (trachomatous inflammation follicular (TF) and/or trachomatous inflammation intense (TI)) and two women with trichiasis (TT) were found, in two of the seven villages surveyed. In Unity State, trachoma was endemic in all thirteen villages surveyed; the proportion of children with active trachoma ranged from 33% to 75% between villages, while TF in children ranged from 16% to 44%. Between 4% to 51% of examined women showed signs of TT. Samples from active trachoma cases tested using the NAAT were positive for Chlamydia trachomatis infection for 46.6% of children and 19.0% of women. Trachoma presents a major problem to public health Unity State, while the disease is of low priority in Northern-Bahr-el-Ghazal State. Implementation of a population-based prevalence survey is now required in Unity State to generate baseline prevalence data so that trachoma interventions can be initiated and monitored over time.

An Unexpected Case of Lyme Disease in a Soldier Serving in Northern Iraq

DTIC Science & Technology

2010-05-01

Christopher E. Curtis, MC USAt 188143 ABSTRACT Lyme disease is a tick-transmitted disease caused by the spirochete Borrelia burgdorferi. Cases have been...MILITARY MEDICINE, 175,5:367,2010 An Unexpected Case of Lyme Disease in a Soldier Serving in Northern Iraq CPT Jeremy B. Fisher, SP USA *; CPT...Turkey.3-S We report an unexpected case of Lyme disease from Iraq. CASE REPORT A 28-year-old active duty Army male, on a deployment to northern Iraq

Survival and growth of planted northern red oak in northern West Virginia

Treesearch

Charles A. McNeel; David M. Hix; Edwin C. Townsend

1993-01-01

The survival and growth of northern red oak (Quercus rubra L.) seedlings planted beneath a shelterwood in northern West Virginia were evaluated one year after planting. The use of 1.5 m (5 ft) tall TUBEX tree shelters on planted seedlings was also examined. The study was conducted on both excellent and good sites (site indices of 27 m (89 ft) and 22...

Response of nesting northern goshawks to logging truck noise in northern Arizona

Treesearch

Teryl G. Grubb; Larry L. Pater; Angela E. Gatto; David K. Delaney

2013-01-01

We recorded 94 sound-response events at 3 adult-occupied northern goshawk (Accipiter gentilis) nests 78 m, 143 m, and 167m from the nearest United States Forest Service maintenance level 3, improved gravel road on the Kaibab Plateau in northern Arizona. During 4 test sessions on 7, 8, 10, and 11 June 2010, we recorded 60 experimentally controlled logging trucks; 30 non...

Modeling global change impacts on Northern Eurasia

NASA Astrophysics Data System (ADS)

Kicklighter, D. W.; Monier, E.; Sokolov, A. P.; Zhuang, Q.; Melillo, J. M.; Reilly, J. M.

2016-12-01

Northern Eurasia is a major player in the global carbon budget and includes roughly 70% of the Earth's boreal forest and more than two-thirds of the Earth's permafrost. The region has experienced dramatic climate change (increase in temperature, growing season length, floods and droughts), natural disturbances (wildfires and insect outbreaks), and land-use change (timber harvest, urbanization, expansion and abandonment of agricultural lands) over the past century. These large environmental and socioeconomic impacts have major implications for the carbon cycle in the region. Northern Eurasia is made up of a diverse set of ecosystems that range from deserts to forests, with significant areas of croplands, pastures, and urban areas. As such, it represents a complex system with substantial challenges for the modeling community. We provide an overview of past, ongoing and possible future efforts of the integrated modeling of global change for Northern Eurasia. First, we review the variety of existing modeling approaches to investigate specific components of Earth system dynamics in the region. While there are a limited number of studies that try to integrate various aspects of the Earth system through scale, teleconnections or processes, there are few systematic analyses of the various feedbacks among components within the Earth system. As a result, there is a lack of knowledge of the relative importance of such feedbacks, and it is unclear how relevant current studies, which do not account for these feedbacks, may be for policymaking. Next, we review the role of Earth system models, and their advantages/limitations compared to detailed single component models. We further introduce human activity models (e.g., global trade, economic models, demographic models), and the need for Integrated Assessment Models (IAMs), a suite of models that couple human activity models to Earth System Models. Finally, we examine emerging issues that require a representation of the coupled

Late Pleistocene-Holocene volcanic activity in northern Victoria Land recorded in Ross Sea (Antarctica) marine sediments

NASA Astrophysics Data System (ADS)

Del Carlo, P.; Di Roberto, A.; Di Vincenzo, G.; Bertagnini, A.; Landi, P.; Pompilio, M.; Colizza, E.; Giordano, G.

2015-05-01

Eight pyroclastic fall deposits have been identified in cores of Late Pleistocene-Holocene marine sediments from the Ross Sea (Antarctica), and their components, granulometry and clast morphologies were analysed. Sedimentological, petrographic and geochemical analysis of clasts, with 40Ar-39Ar dating of alkali feldspar grains, indicate that during this period at least five explosive eruptions of mid to high intensity (plinian to subplinian) occurred, and that three of these eruptions took place from Mount Melbourne volcanic complex, between 137.1 ± 3.4 and 12 ka. Geochemical comparison of the studied tephra with micro- and crypto-tephra recovered from deep Antarctic ice cores and from nearby englacial tephra at Frontier Mountain indicates that eruptive activity in the Melbourne Volcanic Province of northern Victoria Land was intense during the Late Pleistocene-Holocene, but only a general area of provenance for the majority of the identified tephra can be identified.

Glaciomarine sedimentation and bottom current activity on the north-western and northern continental margins of Svalbard during the late Quaternary

NASA Astrophysics Data System (ADS)

Chauhan, Teena; Noormets, Riko; Rasmussen, Tine L.

2016-04-01

Palaeo-bottom current strength of the West Spitsbergen Current (WSC) and the influence of the Svalbard-Barents Sea Ice Sheet (SBIS) on the depositional environment along the northern Svalbard margins are poorly known. Two gravity cores from the southern Yermak Plateau and the upper slope north of Nordaustlandet, covering marine isotope stage (MIS) 1 to MIS 5, are investigated. Five lithofacies, based on grain size distribution, silt/clay ratio, content and mean of sortable silt (SS), are distinguished to characterise the contourite-dominated sedimentary environments. In addition, depositional environments are described using total organic carbon (TOC), total sulphur (TS) and calcium carbonate (CaCO3) contents of sediments. Facies A, containing coarse SS, suggests strong bottom current activity and good bottom water ventilation conditions as inferred from low TOC content. This facies was deposited during the glacial periods MIS 4, MIS 2 and during the late Holocene. Facies B is dominated by fine SS indicating weak bottom current and poor ventilation (cf. high TOC content of 1.2-1.6%), and correlates with the MIS 4/3 and MIS 2/1 transition periods. With an equal amount of clay and sand, fine SS and high content of TOC, facies C indicates reduced bottom current strength for intervals with sediment supply from proximal sources such as icebergs, sea ice or meltwater discharge. This facies was deposited during the last glacial maximum. Facies D represents mass-flow deposits on the northern Svalbard margin attributed to the SBIS advance at or near the shelf edge. Facies E sediments indicating moderate bottom current strength were deposited during MIS 5 and MIS 3, and during parts of MIS 2. This first late Quaternary proxy record of the WSC flow and sedimentation history from the northern Svalbard margin suggests that the oceanographic conditions and ice sheet processes have exerted first-order control on sediment properties.

Anomalous high-frequency wave activity flux preceding anomalous changes in the Northern polar jet

NASA Astrophysics Data System (ADS)

Nakamura, Mototaka; Kadota, Minoru; Yamane, Shozo

2010-05-01

Anomalous forcing by quasi-geostrophic (QG) waves has been reported as an important forcing factor in the Northern Annular Mode (NAM) in recent literatures. In order to shed a light on the dynamics of the NAM from a different angle, we have examined anomalous behavior of the winter jets in the upper troposphere and stratosphere by focusing our diagnosis on not the anomalous geopotential height (Z) itself, but on the anomalous change in the Z (dZ) between two successive months and preceding transient QG wave activity flux during the cold season. We calculated EOFs of dZ between two successive months at 150hPa for a 46-year period, from 1958 to 2003, using the monthly mean NCEP reanalysis data. We then formed anomaly composites of changes in Z and the zonal velocity (U), as well as the preceding and following wave activity flux, Z, U, and temperature at various heights, for both positive and negative phases of the first EOF. For the wave forcing fields, we adopted the diagnostic system for the three-dimensional QG transient wave activity flux in the zonally-varying three-dimensional mean flow developed by Plumb (1986) with a slight modification in its application to the data. Our choice of the Plumb86 is based on the fact that the winter mean flow in the Northern Hemisphere is characterized by noticeable zonal asymmetry, and has a symbiotic relationship with waves in the extra-tropics. The Plumb86 flux was calculated for high-frequency (period of 2 to 7 days) and low-frequency (period of 10 to 20 days) waves with the ultra-low-frequency (period of 30 days or longer) flow as the reference state for each time frame of the 6 hourly NCEP reanalysis data from 1958 to 2003. By replacing the mean flow with the ultra-low-frequency flow in the application of the Plumb86 formula, the flux fields were calculated as time series at 6 hour intervals. The time series of the wave activity flux was then averaged for each month. The patterns of composited anomalous dZ and dU clearly

Fertilization of Northern Hardwoods

Treesearch

R. Lea; D.G. Brockway

1986-01-01

Northern hardwoods grow over a considerable range of climatic and edaphic conditions and exhibit a wide range in productivity.Many northern hardwood forests are capable of high production relative to other forest types, but are often slow to reach maximum productivity because of low nutrient availability.Altering the patterns of biomass accumulation so that managers...

Intracisternal A-Particle Element Transposition into the Murine β-Glucuronidase Gene Correlates with Loss of Enzyme Activity: a New Model for β-Glucuronidase Deficiency in the C3H Mouse†

PubMed Central

Gwynn, Babette; Lueders, Kira; Sands, Mark S.; Birkenmeier, Edward H.

1998-01-01

The severity of human mucopolysaccharidosis type VII (MPS VII), or Sly syndrome, depends on the relative activity of the enzyme β-glucuronidase. Loss of β-glucuronidase activity can cause hydrops fetalis, with in utero or postnatal death of the patient. In this report, we show that β-glucuronidase activity is not detectable by a standard fluorometric assay in C3H/HeOuJ (C3H) mice homozygous for a new mutation, gusmps2J. These gusmps2J/gusmps2J mice are born and survive much longer than the previously characterized β-glucuronidase-null B6.C-H-2bm1/ByBir-gusmps (gusmps/gusmps) mice. Northern blot analysis of liver from gusmps2J/gusmps2J mice demonstrates a 750-bp reduction in size of β-glucuronidase mRNA. A 5.4-kb insertion in the Gus-sh nucleotide sequence from these mice was localized by Southern blot analysis to intron 8. The ends of the inserted sequences were cloned by inverse PCR and revealed an intracisternal A-particle (IAP) element inserted near the 3′ end of the intron. The sequence of the long terminal repeat (LTR) regions of the IAP most closely matches that of a composite LTR found in transposed IAPs previously identified in the C3H strain. The inserted IAP may contribute to diminished β-glucuronidase activity either by interfering with transcription or by destabilizing the message. The resulting phenotype is much less severe than that previously described in the gusmps/gusmps mouse and provides an opportunity to study MPS VII on a genetic background that clearly modulates disease severity. PMID:9774663

The combination of quantitative PCR and western blot detecting CP4-EPSPS component in Roundup Ready soy plant tissues and commercial soy-related foodstuffs.

PubMed

Xiao, Xiao; Wu, Honghong; Zhou, Xinghu; Xu, Sheng; He, Jian; Shen, Wenbiao; Zhou, Guanghong; Huang, Ming

2012-06-01

With the widespread use of Roundup Ready soy (event 40-3-2) (RRS), the comprehensive detection of genetically modified component in foodstuffs is of significant interest, but few protein-based approaches have been found useful in processed foods. In this report, the combination of quantitative PCR (qPCR) and western blot was used to detect cp4-epsps gene and its protein product in different RRS plant tissues and commercial soy-containing foodstuffs. The foods included those of plant origin produced by different processing procedures and also some products containing both meat and plant protein concentrates. The validity of the 2 methods was confirmed first. We also showed that the CP4-EPSPS protein existed in different RRS plant tissues. In certain cases, the results from the western blot and the qPCR were not consistent. To be specific, at least 2 degraded fragments of CP4-EPSPS protein (35.5 and 24.6 kDa) were observed. For dried bean curd crust and deep-fried bean curd, a degraded protein fragment with the size of 24.6 kDa appeared, while cp4-epsps gene could not be traced by qPCR. In contrast, we found a signal of cp4-epsps DNA in 3 foodstuffs, including soy-containing ham cutlet product, meat ball, and sausage by qPCR, while CP4-EPSPS protein could not be detected by western blot in such samples. Our study therefore concluded that the combination of DNA- and protein-based methods would compensate each other, thus resulting in a more comprehensive detection from nucleic acid and protein levels. The combination of quantitative PCR (qPCR) and western blot was used to detect cp4-epsps gene and its protein product in different Roundup Ready soy (event 40-3-2) plant tissues and commercial soy-containing foodstuffs. The foods included those of plant origin produced by different processing procedures and also some products containing a combination of both meat and plant protein concentrates. This study indicated that the combination of DNA- and protein-based methods

Adaptability of black walnut, black cherry, and Northern red oak to Northern California

Treesearch

Philip M. McDonald

1987-01-01

When planted in sheltered sites in northern California, only 49% of black walnut (Juglans nigra L.) and 58% of black cherry (Prunus serotina Ehrh.) survived for 15 years, and 20% of northern red oak (Quercus rubra L.) survived for 10 years. The black walnut trees averaged 0.6 inches diameter at breast...

Movements of a polar bear from northern Alaska to northern Greenland

USGS Publications Warehouse

Durner, George M.; Amstrup, Steven C.

1995-01-01

Using satellite telemetry, we monitored the movements of an adult female polar bear (Ursus maritimus) as she traveled from the Alaskan Beaufort Sea coast to northern Greenland. She is the first polar bear known to depart the Beaufort Sea region for an extended period, and the first polar bear known to move between Alaska and Greenland. This bear traveled for four months across the polar basin and came within 2 degrees of the North Pole. During the first year following her capture, she traveled 5256 km. Evidence to suggest her use of maternity dens in northern Alaska and in northern Greenland demonstrates the potential for genetic exchange between two widely separate populations of polar bears. The long life spans of polar bears and the rarity of their long-range movements means the significance of interpopulation movement can be assessed after long-term monitoring of individuals.

What are northern hardwoods?

Treesearch

Richard M. Godman

1992-01-01

The term "northern hardwoods" was used in the early 1900's to separate the hardwoods of the northern region from those growing in the South. With continued usage in the North the term now represents all dense hardwood species both in the Lake States and Northeast. Unfortunately, this has complicated describing and applying silvicultural practices for...

Contribution of dot-blot assay to the diagnosis and management of myositis: a three-year practice at a university hospital centre.

PubMed

Martel, Clothilde; Vignaud, Guillaume; Liozon, Eric; Magy, Laurent; Gallouedec, Gael; Ly, Kim; Bezanahary, Holly; Cypierre, Anne; Lapébie, François-Xavier; Palat, Sylvain; Gondran, Guillaume; Jauberteau, Marie-Odile; Fauchais, Anne-Laure

2016-01-01

Idiopathic inflammatory myopathies (IIM) are heterogeneous autoimmune diseases with wide clinical spectrum that may lead to delayed diagnosis. The aim of this study was to examine the impact of IIM-specific dot-blot assay on diagnostic process of patients presenting with muscular or systemic symptoms evocating of IIM. We collected all the prescriptions of an IIM specific dot-blot assay (8 autoantigens including Jo-1, PL-7, PL-12, SRP, Mi-2, Ku, PM/Scl and Scl-70) over a 38-month period. 316 myositis dot-blot assays (MSD) were performed in 274 patients (156 women, mean age 53±10.6 years) referring for muscular and/or systemic symptoms suggesting IIM. The timing of dot prescription through the diagnostic process was highly variable: without (35%), concomitantly (16%) or after electromyographic studies (35%). Fifty-nine patients (22%) had IIM according to Bohan and Peter's criteria. Among them, 29 (49%) had positive dot (8 Jo-1, 6 PM-Scl, 5 PL-12, 5 SRP, 2 Mi-2, 2 PL-7 and 1 Ku). Various other diagnoses were performed including 35 autoimmune disease or granulomatosis (12%), 19 inflammatory rheumatic disease (7%), 16 non inflammatory muscular disorders (6%), 10 drug-induced myalgia (4%), 11 infectious myositis (4%). Except 11 borderline SRP results and one transient PM-Scl, MSD was positive only in one case of IIM. Dot allowed clinicians to correct diagnosis in 4 cases and improved the diagnosis of IIM subtypes in 4 cases. This study reflects the interest of myositis dot in the rapid diagnosis process of patients with non-specific muscular symptoms leading to various diagnoses including IIM.

Grazing effects on carbon fluxes in a northern China grassland

USDA-ARS?s Scientific Manuscript database

Grazing is a widespread use of grasslands in northern China, but if stocking rate exceeds grassland carrying capacity, degradation and desertification can occur. As a result, grazing management is critical and can play a significant role in driving C sink and source activity in grassland ecosystems...

Cloning and sequence analysis of a cDNA clone coding for the mouse GM2 activator protein.

PubMed Central

Bellachioma, G; Stirling, J L; Orlacchio, A; Beccari, T

1993-01-01

A cDNA (1.1 kb) containing the complete coding sequence for the mouse GM2 activator protein was isolated from a mouse macrophage library using a cDNA for the human protein as a probe. There was a single ATG located 12 bp from the 5' end of the cDNA clone followed by an open reading frame of 579 bp. Northern blot analysis of mouse macrophage RNA showed that there was a single band with a mobility corresponding to a size of 2.3 kb. We deduce from this that the mouse mRNA, in common with the mRNA for the human GM2 activator protein, has a long 3' untranslated sequence of approx. 1.7 kb. Alignment of the mouse and human deduced amino acid sequences showed 68% identity overall and 75% identity for the sequence on the C-terminal side of the first 31 residues, which in the human GM2 activator protein contains the signal peptide. Hydropathicity plots showed great similarity between the mouse and human sequences even in regions of low sequence similarity. There is a single N-glycosylation site in the mouse GM2 activator protein sequence (Asn151-Phe-Thr) which differs in its location from the single site reported in the human GM2 activator protein sequence (Asn63-Val-Thr). Images Figure 1 PMID:7689829

Northern Eurasia Future Initiative (NEFI): Presentation and Justification of the NEFI Science Plan

NASA Astrophysics Data System (ADS)

Groisman, P. Y.; Gutman, G.; Gulev, S.; Maksyutov, S. S.; Qi, J.; Shugart, H. H., Jr.

2016-12-01

Since 2004, the Northern Eurasia Earth Science Partnership Initiative (NEESPI) - an interdisciplinary program of internationally-supported Earth systems and science research - has addressed large-scale and long-term manifestations of climate and environmental changes over Northern Eurasia and their impact on the Global Earth system. With more than 1500 peer-reviewed journal publications and 40 books to its credit, NEESPI's activities resulted in significant scientific outreach. This created a new research realm through self-organization of NEESPI scientists in a broad research network, accumulation of knowledge while developing new tools (observations, models, and collaborative networks) and producing new, exciting results that can be applied to directly support decision-making for societal needs. At the Synthesis NEESPI Workshop in Prague, Czechia (April 9-12, 2015) it was decided to shift gradually the foci of regional studies in Northern Eurasia towards applications with the following major Science Question: "What dynamic and interactive change(s) will affect societal well-being, activities, and health, and what might be the mitigation and adaptation strategies that could support sustainable development and decision-making activities in Northern Eurasia?". To answer this question requires a stronger socio-economic component in the ongoing and future regional studies focused on sustainable societal development under changing climatic and environmental conditions. The NEESPI Research Team has reorganized itself into "Northern Eurasia Future Initiative" (NEFI) and began development of the NEFI Programmatic White Paper released at http://neespi.org in June 2016. Presentation will provide justification of the new NEFI research foci and approach examples addressing them. The societal challenges, particularly the socio-economic challenges are the top priority in most of them. Throughout the NEESP Initiative duration, support for it studies has been provided by

Wildfires threaten mercury stocks in northern soils

USGS Publications Warehouse

Turetsky, M.R.; Harden, J.W.; Friedli, H.R.; Flannigan, M.; Payne, N.; Crock, J.; Radke, L.

2006-01-01

With climate change rapidly affecting northern forests and wetlands, mercury reserves once protected in cold, wet soils are being exposed to burning, likely triggering large releases of mercury to the atmosphere. We quantify organic soil mercury stocks and burn areas across western, boreal Canada for use in fire emission models that explore controls of burn area, consumption severity, and fuel loading on atmospheric mercury emissions. Though renowned as hotspots for the accumulation of mercury and its transformation to the toxic methylmercury, boreal wetlands might soon transition to hotspots for atmospheric mercury emissions. Estimates of circumboreal mercury emissions from this study are 15-fold greater than estimates that do not account for mercury stored in peat soils. Ongoing and projected increases in boreal wildfire activity due to climate change will increase atmospheric mercury emissions, contributing to the anthropogenic alteration of the global mercury cycle and exacerbating mercury toxicities for northern food chains. Copyright 2006 by the American Geophysical Union.

Characterization of Nora Virus Structural Proteins via Western Blot Analysis.

PubMed

Ericson, Brad L; Carlson, Darby J; Carlson, Kimberly A

2016-01-01

Nora virus is a single stranded RNA picorna-like virus with four open reading frames (ORFs). The coding potentials of the ORFs are not fully characterized, but ORF3 and ORF4 are believed to encode the capsid proteins (VP3, VP4a, VP4b, and VP4c) comprising the virion. To determine the polypeptide composition of Nora virus virions, polypeptides from purified virus were compared to polypeptides detected in Nora virus infected Drosophila melanogaster. Nora virus was purified from infected flies and used to challenge mice for the production of antisera. ORF3, ORF4a, ORF4b, and ORF4c were individually cloned and expressed in E. coli; resultant recombinant proteins purified and were used to make monospecific antisera. Antisera were evaluated via Western blot against whole virus particles and Nora virus infected fly lysates. Viral purification yielded two particle types with densities of ~1.31 g/mL (empty particles) and ~1.33 g/mL (complete virions). Comparison of purified virus polypeptide composition to Nora virus infected D. melanogaster lysate showed the number of proteins in infected cell lysates is less than purified virus. Our results suggest the virion is composed of 6 polypeptides, VP3, VP4a, two forms of VP4b, and two forms of VP4c. This polypeptide composition is similar to other small RNA insect viruses.

Characterization of Nora Virus Structural Proteins via Western Blot Analysis

PubMed Central

Ericson, Brad L.; Carlson, Darby J.

2016-01-01

Nora virus is a single stranded RNA picorna-like virus with four open reading frames (ORFs). The coding potentials of the ORFs are not fully characterized, but ORF3 and ORF4 are believed to encode the capsid proteins (VP3, VP4a, VP4b, and VP4c) comprising the virion. To determine the polypeptide composition of Nora virus virions, polypeptides from purified virus were compared to polypeptides detected in Nora virus infected Drosophila melanogaster. Nora virus was purified from infected flies and used to challenge mice for the production of antisera. ORF3, ORF4a, ORF4b, and ORF4c were individually cloned and expressed in E. coli; resultant recombinant proteins purified and were used to make monospecific antisera. Antisera were evaluated via Western blot against whole virus particles and Nora virus infected fly lysates. Viral purification yielded two particle types with densities of ~1.31 g/mL (empty particles) and ~1.33 g/mL (complete virions). Comparison of purified virus polypeptide composition to Nora virus infected D. melanogaster lysate showed the number of proteins in infected cell lysates is less than purified virus. Our results suggest the virion is composed of 6 polypeptides, VP3, VP4a, two forms of VP4b, and two forms of VP4c. This polypeptide composition is similar to other small RNA insect viruses. PMID:27298753

Post-Transcriptional Regulation of Urokinase-type Plasminogen Activator Receptor Expression in Lipopolysaccharide-induced Acute Lung Injury

PubMed Central

Bhandary, Yashodhar P.; Velusamy, Thirunavukkarasu; Shetty, Praveenkumar; Shetty, Rashmi S.; Idell, Steven; Cines, Douglas B.; Jain, Deepika; Bdeir, Khalil; Abraham, Edward; Tsuruta, Yuko; Shetty, Sreerama

2009-01-01

Rationale: Urokinase-type plasminogen activator (uPA) receptor (uPAR) is required for the recruitment of neutrophils in response to infection. uPA induces its own expression in lung epithelial cells, which involves its interaction with cell surface uPAR. Regulation of uPAR expression is therefore crucial for uPA-mediated signaling in infectious acute lung injury (ALI). Objectives: To determine the role of uPA in uPAR expression during ALI caused by sepsis. Methods: We used Western blot, Northern blot, Northwestern assay, and immunohistochemistry. Phosphate-buffered saline– and lipopolysaccharide (LPS)-treated wild-type and uPA−/− mice were used. Measurements and Main Results: Biological activities of uPA, including proteolysis, cell adhesion, migration, proliferation, and differentiation, are dependent on its association with uPAR. Bacterial endotoxin (LPS) is a major cause of pulmonary dysfunction and infection-associated mortality. The present study shows that LPS induces uPAR expression both in vitro and in vivo, and that the mechanism involves post-transcriptional stabilization of uPAR mRNA by reciprocal interaction of phosphoglycerate kinase (PGK) and heterogeneous nuclear ribonucleoprotein C (hnRNPC) with uPAR mRNA coding region and 3′ untranslated region determinants, respectively. The process involves tyrosine phosphorylation of PGK and hnRNPC. uPA−/− mice failed to induce uPAR expression after LPS treatment. In these mice, LPS treatment failed to alter the binding of PGK and hnRNPC protein with uPAR mRNA due to lack of tyrosine phosphorylation. Conclusions: Our study shows that induction of LPS-mediated uPAR expression is mediated through tyrosine phosphorylation of PGK and hnRNPC. This involves expression of uPA as an obligate intermediary. PMID:19029002

Northern homelands, northern frontier: linking culture and economic security in contemporary livelihoods in boreal and cold temperate forest communities in northern Canada

Treesearch

Andrew J. Chapeskie

2001-01-01

This paper highlights the environmental pressures that have historically been brought to bear on the northern forests of Canada. It then presents the idea of the northern frontier forests of Canada as Indigenous landscapes whose ecological diversity and abundance have historically been nurtured in no small measure by their original inhabitants. It then proposes how...

Rosette Assay: Highly Customizable Dot-Blot for SH2 Domain Screening.

PubMed

Ng, Khong Y; Machida, Kazuya

2017-01-01

With a growing number of high-throughput studies, structural analyses, and availability of protein-protein interaction databases, it is now possible to apply web-based prediction tools to SH2 domain-interactions. However, in silico prediction is not always reliable and requires experimental validation. Rosette assay is a dot blot-based reverse-phase assay developed for the assessment of binding between SH2 domains and their ligands. It is conveniently customizable, allowing for low- to high-throughput analysis of interactions between various numbers of SH2 domains and their ligands, e.g., short peptides, purified proteins, and cell lysates. The binding assay is performed in a 96-well plate (MBA or MWA apparatus) in which a sample spotted membrane is incubated with up to 96 labeled SH2 domains. Bound domains are detected and quantified using a chemiluminescence or near-infrared fluorescence (IR) imaging system. In this chapter, we describe a practical protocol for rosette assay to assess interactions between synthesized tyrosine phosphorylated peptides and a library of GST-tagged SH2 domains. Since the methodology is not confined to assessment of SH2-pTyr interactions, rosette assay can be broadly utilized for ligand and drug screening using different protein interaction domains or antibodies.

Mutation and new polymorphisms insight in introns 11 to 14a of CFTR gene of northern Iranian cystic fibrosis patients.

PubMed

Esmaeili Dooki, Mohammad Reza; Tabaripour, Reza; Rahimi, Razieh; Akhavan-Niaki, Haleh

2015-06-15

Cystic fibrosis (CF) is the most common autosomal recessive disease in Caucasians, caused by mutation in cystic fibrosis transmembrane conductance regulator (CFTR). The type and distribution of mutations vary widely between different countries and ethnic groups. We therefore aimed to perform a comprehensive analysis of the CFTR gene in northern Iranian CF patients. Forty northern Iranian CF patients were analyzed for mutations in introns 11 to 14a of their CFTR genes, using sequencing and reverse dot blot methods. Five normal subjects were also analyzed as normal control. One mutation and seven polymorphisms were identified. Of the eighty alleles studied, c.2043delG in exon 13 represented 12.5% of mutant alleles and was associated with two distinct haplotypes. rs1042077T>G, rs4148712delAT, rs4148711T>A and rs3808183 T>C with frequencies varying between 29.2% and 6.9% for the least common allele, as well as three new polymorphisms c.1680-224C>A (11.1%), c.2491-275T>G (14.1%) and c.2491-274C>G (35.9%) were detected. These findings suggest a founder effect for c.2043delG in the Middle East and will assist in genetic counseling, prenatal diagnosis and future screening of CF in Iran. Copyright © 2015 Elsevier B.V. All rights reserved.

Interannual and Decadal Variations of Planetary Wave Activity, Stratospheric Cooling, and Northern Hemisphere Annular Mode.

NASA Astrophysics Data System (ADS)

Hu, Yongyun; Kit Tung, Ka

2002-07-01

Using NCEP-NCAR 51-yr reanalysis data, the interannual and decadal variations of planetary wave activity and its relationship to stratospheric cooling, and the Northern Hemisphere Annular mode (NAM), are studied. It is found that winter stratospheric polar temperature is highly correlated on a year-to-year basis with the Eliassen-Palm (E-P) wave flux from the troposphere, implying a dynamical control of the former by the latter, as often suggested. Greater (lower) wave activity from the troposphere implies larger (smaller) poleward heat flux into the polar region, which leads to warmer (colder) polar temperature. A similar highly correlated antiphase relationship holds for E-P flux divergence and the strength of the polar vortex in the stratosphere. It is tempting to extrapolate these relationships found for interannual timescales to explain the recent stratospheric polar cooling trend in the past few decades as caused by decreased wave activity in the polar region. This speculation is not supported by the data. On timescales of decades the cooling trend is not correlated with the trend in planetary wave activity. In fact, it is found that planetary wave amplitude, E-P flux, and E-P flux convergence all show little statistical evidence of decrease in the past 51 yr, while the stratosphere is experiencing a cooling trend and the NAM index has a positive trend during the past 30 yr. This suggests that the trends in the winter polar temperature and the NAM index can reasonably be attributed to the radiative cooling of the stratosphere, due possibly to increasing greenhouse gases and ozone depletion. It is further shown that the positive trend of the NAM index in the past few decades is not through the inhibition of upward planetary wave propagation from the troposphere to the stratosphere, as previously suggested.

Exposure of northern leopard frogs in the Green Bay ecosystem to polychlorinated biphenyls, polychlorinated dibenzo-p-dioxins, and polychlorinated dibenzofurans is measured by direct chemistry but not hepatic ethoxyresorufin-O-deethylase activity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Y.W.; Karasov, W.H.; Patnode, K.A.

1999-10-01

The authors measured concentrations of polychlorinated biphenyls (PCBs), polychlorinated dibenzo-p-dioxins (PCDDs), and polychlorinated dibenzofurans (PCDFs) in northern leopard frogs collected from the Green Bay ecosystem and explored the catalytic activity of hepatic cytochrome P450-associated monooxygenase (P450 enzyme) as a biomarker for exposure to aryl hydrocarbon receptor (AhR) agonists. The two hypotheses tested were PCH concentrations in northern leopard frogs would be positively correlated with sediment polychlorinated hydrocarbon (PCH) levels in wetland habitats along a contamination gradient and hepatic ethoxyresorufin-O-deethylase (EROD) activity of northern leopard frogs, which is presumably mediated by aryl hydrocarbon receptor (AhR), would be positively correlated with PCHmore » concentrations in frog carcasses from different collection sites. In 1994 and 1995, frogs from seven sites along the lower Fox River and Green Bay, USA, were assayed for hepatic EROD activities and whole carcass concentrations of PCBs, PCDDs, and PCDFs. Tissue total PCB concentrations ranging from 3 to 154 ng/g were significantly correlated with sediment PCB levels. Only one PCDD and two PCDFs at concentrations of 6 to 8 pg/g were found in the frogs collected with frog body weight and was similar among sites except for Peter's Marsh. No significant correlation was found between EROD activity and carcass PCB concentration. This result was consistent with the fact that the frogs collected from the Green Bay ecosystem had relatively low PCB concentrations compared with what was required for induction in the laboratory.« less

Comparison of Multispot EIA with Western blot for confirmatory serodiagnosis of HIV.

PubMed

Torian, Lucia V; Forgione, Lisa A; Punsalang, Amado E; Pirillo, Robert E; Oleszko, William R

2011-12-01

Recent improvements in the sensitivity of immunoassays (IA) used for HIV screening, coupled with increasing recognition of the importance of rapid point-of-care testing, have led to proposals to adjust the algorithm for serodiagnosis of HIV so that screening and confirmation can be performed using a dual or triple IA sequence that does not require Western blotting for confirmation. One IA that has been proposed as a second or confirmatory test is the Bio-Rad Multispot(®) Rapid HIV-1/HIV-2 Test. This test would have the added advantage of differentiating between HIV-1 and HIV-2 antibodies. To compare the sensitivity and type-specificity of an algorithm combining a 3rd generation enzyme immunoassay (EIA) followed by a confirmatory Multispot with the conventional algorithm that combines a 3rd generation EIA (Bio-Rad GS HIV-1/HIV-2 Plus O EIA) followed by confirmatory Western blot (Bio-Rad GS HIV-1 WB). 8760 serum specimens submitted for HIV testing to the New York City Public Health Laboratory between May 22, 2007, and April 30, 2010, tested repeatedly positive on 3rd generation HIV-1-2+O EIA screening and received parallel confirmatory testing by WB and Multispot (MS). 8678/8760 (99.1%) specimens tested WB-positive; 82 (0.9%) tested WB-negative or indeterminate (IND). 8690/8760 specimens (99.2%) tested MS-positive, of which 14 (17.1%) had been classified as negative or IND by WB. Among the HIV-1 WB-positive specimens, MS classified 26 (0.29%) as HIV-2. Among the HIV-1 WB negative and IND, MS detected 12 HIV-2. MS detected an additional 14 HIV-1 infections among WB negative or IND specimens, differentiated 26 HIV-1 WB positives as HIV-2, and detected 12 additional HIV-2 infections among WB negative/IND. A dual 3rd generation EIA algorithm incorporating MS had equivalent HIV-1 sensitivity to the 3rd generation EIA-WB algorithm and had the added advantage of detecting 12 HIV-2 specimens that were not HIV-1 WB cross-reactors. In this series an algorithm using EIA

The Research of Tectonic Framework and the Fault Activity in Large Detachment Basin System on Northern Margin of South China Sea

NASA Astrophysics Data System (ADS)

Pan, L., Sr.; Ren, J.

2017-12-01

The South China Sea (SCS) is one of the largest marginal sea on southeast Asia continental margin, developed Paleogene extension-rifting continental margin system which is rare in the world and preserving many deformed characterizes of this kind system. With the investigation of the SCS, guiding by the development of tectonics and geo-physics, especially the development of tectonics and the high quality seismic data based on the development of geo-physics, people gradually accept that the northern margin of the SCS has some detachment basin characterizes. After researching the northern margin of the SCS, we come up with lithosphere profiles across the shelf, slope and deep sea basin in the northeast of the SCS to confirm the tectonic style of ocean-continental transition and the property of the detachment fault. Furthermore, we describe the outline of large detachment basins at northern SCS. Based on the large number of high-quality 2D and 3D deep seismic profile(TWT,10s), drilling and logging data, combined with domestic and international relevant researches, using basin dynamics and tectono-stratigraphy theory, techniques and methods of geology and geophysics, qualitative and quantitative, we describe the formation of the detachment basin and calculate the fault activity rate, stretching factor and settlement. According to the research, we propose that there is a giant and complete detachment basin system in the northern SCS and suggest three conclusions. First of all, the detachment basin system can be divided into three domains: proximal domain covering the Yangjiang Sag, Shenhu uplift and part of Shunde Sag, necking zone covering part of the Shunde Sag and Heshan Sag, distal domain covering most part of Heshan Sag. Second, the difference of the stretching factor is observed along the three domains of the detachment basin system. The factor of the proximal domain is the minimum among them. On the other side, the distal domain is the maximum among them. This

Leisure-time physical activity and mortality in a multiethnic prospective cohort study: the Northern Manhattan Study.

PubMed

Willey, Joshua Z; Moon, Yeseon Park; Sherzai, Ayesha; Cheung, Ying Kuen; Sacco, Ralph L; Elkind, Mitchell S V

2015-07-01

To examine whether the survival benefit of exercise is modified by obesity. In the Northern Manhattan Study, we collected baseline sociodemographics and cardiovascular disease risk factors. The primary exposure was leisure-time physical activity (LTPA) and the outcomes were total, vascular, and nonvascular deaths (non-VaD). LTPA was defined as any versus none and metabolic equivalent score category (total activity weighted by intensity). We used Cox models to estimate the hazard ratios (HRs) and 95% confidence intervals (CIs). A total of 3298 participants (mean age 69 years, 52% Hispanic, 63% women) were followed over a mean of 11.8 years with 1589 total deaths (641 vascular, 819 nonvascular). Any activity (adjusted HR: 0.84, 95% CI: 0.75-0.94) was associated with reduced risk of all-cause mortality and non-VaD, but not VaD. We found an interaction (P < .05) of LTPA with body mass index (BMI) less than 30 for all-cause and vascular mortality. Any LTPA was associated with reduced all-cause mortality (adjusted HR: 0.77, 95% CI: 0.68-0.87) and VaD (adjusted HR: 0.79, 95% CI: 0.65-0.97) only among those with BMI less than 30. We found no evidence of an independent survival benefit of LTPA among those with BMI more than 30. The health benefits of exercise should be considered in the context of obesity. Copyright © 2015 Elsevier Inc. All rights reserved.

Land Managers' Perceptions of Risk Recreation in the Northern Rockies.

ERIC Educational Resources Information Center

Allen, Stewart D.

This survey was conducted to determine the frequency of participation in high-risk recreation activities in the Northern Rocky Mountains and to identify how wildland managers perceive the presence of these sports and the problems associated with them. Managers rated perceived risk, management difficulty, and appropriateness given management…

Proceedings, 1995 meeting of the Northern Global Change Program; 1995 March 14-16; Pittsburgh, PA. : Introduction/Environmental Change

Treesearch

John Hom; Richard Birdsey; Kelly O' Brian; eds.

1996-01-01

Contains articles presented at the 1995 Northern Global Change Program meeting on the following topics: monitoring and predicting regional environmental change, responses of northern tree species to regional stress, responses of ecosystem processes to regional stress, forest and landscape responses to regional stress and management activities, human-forest interactions...

Decadal variability in the Northern Hemisphere winter circulation: Role of internal and external drivers

NASA Astrophysics Data System (ADS)

Maliniemi, V.; Asikainen, T.; Mursula, K.

2017-12-01

Northern Hemisphere winter circulation is known to be affected by both internal and external (solar-related) forcings. Earlier studies have shown ENSO and volcanic activity to produce negative and positive North Atlantic Oscillation (NAO) type responses, respectively. In addition, recent studies have shown a positive NAO response related to both geomagnetic activity (proxy for solar wind driven particle precipitation) and sunspot activity (proxy for solar irradiance). These solar-related signals have been suggested to be due to the changes in the polar vortex. Here the relative role of these four internal and external drivers on wintertime circulation in the Northern Hemisphere is studied. The phase of the quasi-biennial oscillation (QBO) is used to study the driver responses for different stratospheric conditions. Moreover, the effects are separated for early (Dec/Jan) and late (Feb/Mar) winter. The global pattern of ENSO is very similar (negative NAO) otherwise, but in early winter and westerly QBO the pattern is changed in the Atlantic sector to a weakly positive NAO. The positive NAO pattern due to volcanic activity is more pronounced for westerly QBO in both early and late winter. The positive NAO pattern produced by geomagnetic activity is obtained during easterly QBO phase in both early and late winter. Sunspot related NAO response in late winter is also strongly modulated by the QBO phase. These results imply that the stratospheric conditions expressed by QBO significantly modulate the way the internal and external drivers affect the Northern Hemisphere winter climate.

Probabilistic seismic hazard assessment for northern Southeast Asia

NASA Astrophysics Data System (ADS)

Chan, C. H.; Wang, Y.; Kosuwan, S.; Nguyen, M. L.; Shi, X.; Sieh, K.

2016-12-01

We assess seismic hazard for northern Southeast Asia through constructing an earthquake and fault database, conducting a series of ground-shaking scenarios and proposing regional seismic hazard maps. Our earthquake database contains earthquake parameters from global and local seismic catalogues, including the ISC, ISC-GEM, the global ANSS Comprehensive Catalogues, Seismological Bureau, Thai Meteorological Department, Thailand, and Institute of Geophysics Vietnam Academy of Science and Technology, Vietnam. To harmonize the earthquake parameters from various catalogue sources, we remove duplicate events and unify magnitudes into the same scale. Our active fault database include active fault data from previous studies, e.g. the active fault parameters determined by Wang et al. (2014), Department of Mineral Resources, Thailand, and Institute of Geophysics, Vietnam Academy of Science and Technology, Vietnam. Based on the parameters from analysis of the databases (i.e., the Gutenberg-Richter relationship, slip rate, maximum magnitude and time elapsed of last events), we determined the earthquake recurrence models of seismogenic sources. To evaluate the ground shaking behaviours in different tectonic regimes, we conducted a series of tests by matching the felt intensities of historical earthquakes to the modelled ground motions using ground motion prediction equations (GMPEs). By incorporating the best-fitting GMPEs and site conditions, we utilized site effect and assessed probabilistic seismic hazard. The highest seismic hazard is in the region close to the Sagaing Fault, which cuts through some major cities in central Myanmar. The northern segment of Sunda megathrust, which could potentially cause M8-class earthquake, brings significant hazard along the Western Coast of Myanmar and eastern Bangladesh. Besides, we conclude a notable hazard level in northern Vietnam and the boundary between Myanmar, Thailand and Laos, due to a series of strike-slip faults, which could

Developing a Small-scale De-fluoridation Filter for use in Rural Northern Ghana with Activated Alumina as the Sorbent

NASA Astrophysics Data System (ADS)

Craig, L.; Stillings, L. L.; Decker, D.; Thomas, J.

2013-12-01

In northern Ghana, groundwater is the main source of household water and is generally considered a safe and economical source of drinking water. However in some areas it contains fluoride (F-) concentrations above the 1.5 ppm limit recommended by the World Health Organization, putting the users at risk of fluorosis. The study area in the Upper East Region of northern Ghana has pockets of groundwater F- up to 4.6 ppm and, as a result, also has a high percentage of residents with dental fluorosis. They have no alternative water source and, because of the poverty and limited access to technology, the affected community lacks the capacity to set up advanced treatment systems. One proposed solution is to attach F- adsorption filters to the wells, since adsorption is considered a simple and cost effective approach for treating high F- drinking water. This study evaluates activated alumina as a sorbent for use in de-fluoridation filters in the study area. We evaluated the long-term adsorption capacity of activated alumina, as well as potential changes in F- adsorption rate and capacity with grain size. We measured differences in positive surface charge (as C m-2) via slow acid titration, as well as F- loading with varied prior hydration time. Experimental results from this research show no notable change in F- adsorption or positive surface charge when the activated alumina surface was pre-equilibrated in distilled water from 24 hours up to 30 weeks before the experiment. The results of F- loading show a maximum of ~3.4 mg F- sorbed per gm activated alumina (at initial pH ~6.9, initial F- 1 to 60 ppm, and 20 hr reaction time). The pH dependent surface charge shows a maximum of ~0.14 C m-2 at pH of ~4.4 and zero surface charge at pH ~8.5. F- loading experiments were conducted with grain size ranges 0.125 to 0.250 mm and 0.5 to 1.0 mm to evaluate changes in F- adsorption rate (initial pH ~6.9, initial F- 10 ppm) and F- loading (initial pH ~6.9, initial F- 1 to 60 ppm, 20 hr

Decoupling of monsoon activity across the northern and southern Indo-Pacific during the Late Glacial

NASA Astrophysics Data System (ADS)

Denniston, R. F.; Asmerom, Y.; Polyak, V. J.; Wanamaker, A. D.; Ummenhofer, C. C.; Humphreys, W. F.; Cugley, J.; Woods, D.; Lucker, S.

2017-11-01

Recent studies of stalagmites from the Southern Hemisphere tropics of Indonesia reveal two shifts in monsoon activity not apparent in records from the Northern Hemisphere sectors of the Austral-Asian monsoon system: an interval of enhanced rainfall at ∼19 ka, immediately prior to Heinrich Stadial 1, and a sharp increase in precipitation at ∼9 ka. Determining whether these events are site-specific or regional is important for understanding the full range of sensitivities of the Austral-Asian monsoon. We present a discontinuous 40 kyr carbon isotope record of stalagmites from two caves in the Kimberley region of the north-central Australian tropics. Heinrich stadials are represented by pronounced negative carbon isotopic anomalies, indicative of enhanced rainfall associated with a southward shift of the intertropical convergence zone and consistent with hydroclimatic changes observed across Asia and the Indo-Pacific. Between 20 and 8 ka, however, the Kimberley stalagmites, like the Indonesian record, reveal decoupling of monsoon behavior from Southeast Asia, including the early deglacial wet period (which we term the Late Glacial Pluvial) and the abrupt strengthening of early Holocene monsoon rainfall.

Interrogation of Multidrug Resistance (MDR1) P-glycoprotein (Pgp, ABCB1) Expression in Human Pancreatic Carcinoma Cells: Correlation of 99mTc-Sestamibi Uptake with Western Blot Analysis

PubMed Central

Harpstrite, Scott E.; Gu, Hannah; Natarajan, Radhika; Sharma, Vijay

2014-01-01

Objective Histopathological studies indicate approximately 63% of pancreatic tumors express MDR1 Pgp and its polymorphic variants. However, Pgp expression detected at the messenger RNA or protein level does not always correlate with functional transport activity. Because Pgp transport activity is affected by specific mutations as well as the phosphorylation state of the protein, altered or less active forms of Pgp may also be detected by PCR or immunohistochemistry, which do not accurately reflect the status of tumor cell resistance. To interrogate status of functional expression of MDR1 Pgp in MiaPaCa-2 and PANC-1 cells, cellular transport studies using 99mTc-Sestamibi were performed and correlated with western blot analysis. Methods Biochemical transport assays in human pancreatic carcinoma MiaPaCa-2 and PANC-1 cells, human epidermal carcinoma drug sensitive KB-3-1 cells and human breast carcinoma MCF-7 cells (negative controls), and human epidermal carcinoma drug resistant KB-8-5 cells, human breast carcinoma stably transfected with Pgp MCF-7/MDR1Pgp cells, and liver carcinoma HepG2 cells (positive controls) were performed. Protein levels were determined using a monoclonal antibody C219. Results 99mTc-Sestamibi demonstrates accumulation in human pancreatic carcinoma MiaPaCa-2 and PANC-1 cells. Uptake profiles are not affected by treatment with LY335979, a Pgp-inhibitor, and correlate to Western blot analysis. Conclusions These cellular transport studies indicate an absence of Pgp at a functional level in MiaPaCa-2 and PANC-1 cells. Because major pancreatic tumors originate from pancreatic duct and 99mTc-Sestamibi undergoes a dominant hepatobiliary mode of excretion, it would not be a sensitive probe for imaging pancreatic adenocarcinomas. Following interrogation of the functional status of Pgp in other pancreatic carcinoma cells, chemotherapeutic drugs that are also MDR1 substrates could offer alternative therapeutics for treating pancreatic adenocarcinomas

Retention and sustainability of community-based health volunteers' activities: A qualitative study in rural Northern Ghana.

PubMed

Chatio, Samuel; Akweongo, Patricia

2017-01-01

The shortage of formal health workers has led to the utilization of Community-Based Health Volunteers (CBHV) to provide health care services to people especially in rural and neglected communities. Community-based health volunteers have been effective partners in health care delivery at the community level for many years. The challenge is how to retain these volunteers and also sustain their activities. This study explored factors affecting retention and sustainability of community-based health volunteers' activities in a rural setting in Northern Ghana. This was a qualitative study comprising thirty-two in-depth interviews (IDIs) with health volunteers and health workers in-charge of health volunteers' activities. Purposive sampling technique was used to select study participants for the interviews. The interviews were transcribed and coded into themes using Nvivo 10 software. The thematic analysis framework was used to analyze the data. Study participants reported that the desire to help community members, prestige and recognition as doctors in community mainly motivated them to work as health volunteers. Lack of incentives and logistical supplies such as raincoats, torch lights, wellington boots and transportation in the form of bicycles to facilitate the movement of health volunteers affected the work. They suggested that lack of these things discouraged them from working as health volunteers. Most of the dropout volunteers said lack of support and respect from community members made them to stop working as health volunteers. They recommended that community support, incentives and logistical supplies such as raincoats, torch light, wellington boots, bicycles, awards to hard working volunteers are mechanisms that can help retain community-based health volunteers and also sustain their activities. Providing means of transport and non-monetary incentives would help to retain community-based health volunteers and also sustain their activities at the community level.

Retention and sustainability of community-based health volunteers' activities: A qualitative study in rural Northern Ghana

PubMed Central

Chatio, Samuel; Akweongo, Patricia

2017-01-01

Background The shortage of formal health workers has led to the utilization of Community-Based Health Volunteers (CBHV) to provide health care services to people especially in rural and neglected communities. Community-based health volunteers have been effective partners in health care delivery at the community level for many years. The challenge is how to retain these volunteers and also sustain their activities. This study explored factors affecting retention and sustainability of community-based health volunteers’ activities in a rural setting in Northern Ghana. Methods This was a qualitative study comprising thirty-two in-depth interviews (IDIs) with health volunteers and health workers in-charge of health volunteers’ activities. Purposive sampling technique was used to select study participants for the interviews. The interviews were transcribed and coded into themes using Nvivo 10 software. The thematic analysis framework was used to analyze the data. Results Study participants reported that the desire to help community members, prestige and recognition as doctors in community mainly motivated them to work as health volunteers. Lack of incentives and logistical supplies such as raincoats, torch lights, wellington boots and transportation in the form of bicycles to facilitate the movement of health volunteers affected the work. They suggested that lack of these things discouraged them from working as health volunteers. Most of the dropout volunteers said lack of support and respect from community members made them to stop working as health volunteers. They recommended that community support, incentives and logistical supplies such as raincoats, torch light, wellington boots, bicycles, awards to hard working volunteers are mechanisms that can help retain community-based health volunteers and also sustain their activities. Conclusion Providing means of transport and non-monetary incentives would help to retain community-based health volunteers and also

War and early state formation in the northern Titicaca Basin, Peru

PubMed Central

Stanish, Charles; Levine, Abigail

2011-01-01

Excavations at the site of Taraco in the northern Titicaca Basin of southern Peru indicate a 2,600-y sequence of human occupation beginning ca. 1100 B.C.E. Previous research has identified several political centers in the region in the latter part of the first millennium B.C.E. The two largest centers were Taraco, located near the northern lake edge, and Pukara, located 50 km to the northwest in the grassland pampas. Our data reveal that a high-status residential section of Taraco was burned in the first century A.D., after which economic activity in the area dramatically declined. Coincident with this massive fire at Taraco, Pukara adopted many of the characteristics of state societies and emerged as an expanding regional polity. We conclude that organized conflict, beginning approximately 500 B.C.E., is a significant factor in the evolution of the archaic state in the northern Titicaca Basin. PMID:21788514

War and early state formation in the northern Titicaca Basin, Peru.

PubMed

Stanish, Charles; Levine, Abigail

2011-08-23

Excavations at the site of Taraco in the northern Titicaca Basin of southern Peru indicate a 2,600-y sequence of human occupation beginning ca. 1100 B.C.E. Previous research has identified several political centers in the region in the latter part of the first millennium B.C.E. The two largest centers were Taraco, located near the northern lake edge, and Pukara, located 50 km to the northwest in the grassland pampas. Our data reveal that a high-status residential section of Taraco was burned in the first century A.D., after which economic activity in the area dramatically declined. Coincident with this massive fire at Taraco, Pukara adopted many of the characteristics of state societies and emerged as an expanding regional polity. We conclude that organized conflict, beginning approximately 500 B.C.E., is a significant factor in the evolution of the archaic state in the northern Titicaca Basin.

Patterns of alcohol consumption in middle-aged men from France and Northern Ireland. The PRIME study.

PubMed

Marques-Vidal, P; Arveiler, D; Evans, A; Montaye, M; Bingham, A; Ruidavets, J B; McMaster, D; Haas, B; Amouyel, P; Ducimetière, P

2000-04-01

To assess the patterns of alcohol consumption in France and Northern Ireland. Four cross-sectional studies. Sample of 50-59 y old men living in France and Northern Ireland, consuming at least one unit of alcoholic beverage per week. 5363 subjects from France and 1367 from Northern Ireland. None. Consumption of wine was higher in France whereas consumption of beer and spirits was higher in Northern Ireland. Alcohol drinking was rather homogeneous throughout the week in France, whereas Fridays and Saturdays accounted for 60% of total alcohol consumption in Northern Ireland. In both countries, current smokers had a higher consumption of all types of alcoholic beverages than non-smokers. Similarly, obese and hypertensive subjects had a higher total alcohol consumption than non-obese or normotensive subjects, but the type of alcoholic beverages differed between countries. In Northern Ireland, subjects which reported some physical activity consumed significantly less alcoholic beverages than sedentary subjects, whereas no differences were found in France. Conversely, subjects with dyslipidemia consumed more alcoholic beverages than normolipidemic subjects in France, whereas no differences were found in Northern Ireland. In France, total alcohol, wine and beer consumption was negatively related to socioeconomic status and educational level. In Northern Ireland, total alcohol, beer and spirits consumption was negatively related whereas wine consumption was positively related to socioeconomic status and educational level. Alcohol drinking patterns differ between France and Northern Ireland, and also according to cardiovascular risk factors, socioeconomic and educational levels. Merck, Sharp & Dohme-Chibret (France), the NICHSA and the Department of Health and Social Service (Northern Ireland).

The modest seismicity of the northern Red Sea rift

NASA Astrophysics Data System (ADS)

Mitchell, Neil C.; Stewart, Ian C. F.

2018-05-01

Inferring tectonic movements from earthquakes (`seismotectonics') relies on earthquakes faithfully recording tectonic motions. In the northern half of the Red Sea, however, events of magnitude 5.0 and above are almost entirely absent from global catalogues, even though GPS and other plate motion data suggest that the basin is actively rifting at ˜10 mm yr-1. Seismic moments computed here from event magnitudes contributed to the International Seismology Centre (ISC) suggest that the moment release rate is more than an order of magnitude smaller than for the southern Red Sea and for the Southwest Indian Ridge (SWIR), which is spreading at a comparable rate to the central Red Sea and is more remote from recording stations. A smaller moment release rate in the northern Red Sea might be anticipated from its smaller spreading rate, but seismic coupling coefficients, which account for spreading rate variations, are also one order of magnitude smaller than for the other two areas. We explore potential explanations for this apparently reduced seismicity. The northern Red Sea is almost continuously covered with thick evaporites and overlying Plio-Pleistocene sediments. These deposits may have reduced the thickness of the seismogenic layer, for example, by elevating lithosphere temperatures by a thermal blanketing effect or by leading to excess pore fluid pressures that reduce effective stress. The presence of subdued seismicity here implies that tectonic movements can in places be poorly recorded by earthquake data and requires that alternative data be sought when investigating the active tectonics of sedimented rifts in particular.

Variation of alkaloid contents and antimicrobial activities of Papaver rhoeas L. growing in Turkey and northern Cyprus.

PubMed

Çoban, İlkcan; Toplan, Gizem Gülsoy; Özbek, Berna; Gürer, Çağlayan Unsal; Sarıyar, Günay

2017-12-01

Papaver rhoeas L. (Papaveraceae) corn poppy, widely distributed in Turkey, is used to make a cough syrup for children, as a tea for disturbed sleep, for pain relief and as a sedative in folk medicine. Samples of P. rhoeas collected from eight different locations in Turkey and three from northern Cyprus were investigated for their alkaloid content and screened for their antimicrobial activities. From the aerial parts of P. rhoeas samples, alkaloids were isolated by column and preparative thin-layer chromatography. The alkaloids were identified by comparing their spectral data (UV, IR and 1 H-NMR) and TLC Rf values with those of authentic samples. The antimicrobial study was carried out by microbroth dilution technique against six strains of bacteria and three strains of fungi. Twelve different alkaloids belonging to proaporphine (mecambrine), aporphine (roemerine), promorphinan (salutaridine), protopine (coulteropine and protopine) and rhoeadine (epiglaucamine, glaucamine, glaudine, isorhoeadine, isorhoeagenine, rhoeadine and rhoeagenine) groups were isolated. The most significant activity was observed with the alkaloid extract of P8 against Staphylococcus aureus with a MIC value of 1.22 μg/mL and against Candida albicans with a MIC value of 2.4 μg/mL. The results indicate that P. rhoeas samples (P8 and P9), which contain roemerine as their major alkaloid, were the most active extracts.

Repeated large-magnitude earthquakes in a tectonically active, low-strain continental interior: The northern Tien Shan, Kyrgyzstan

NASA Astrophysics Data System (ADS)

Landgraf, A.; Dzhumabaeva, A.; Abdrakhmatov, K. E.; Strecker, M. R.; Macaulay, E. A.; Arrowsmith, Jr.; Sudhaus, H.; Preusser, F.; Rugel, G.; Merchel, S.

2016-05-01

The northern Tien Shan of Kyrgyzstan and Kazakhstan has been affected by a series of major earthquakes in the late 19th and early 20th centuries. To assess the significance of such a pulse of strain release in a continental interior, it is important to analyze and quantify strain release over multiple time scales. We have undertaken paleoseismological investigations at two geomorphically distinct sites (Panfilovkoe and Rot Front) near the Kyrgyz capital Bishkek. Although located near the historic epicenters, both sites were not affected by these earthquakes. Trenching was accompanied by dating stratigraphy and offset surfaces using luminescence, radiocarbon, and 10Be terrestrial cosmogenic nuclide methods. At Rot Front, trenching of a small scarp did not reveal evidence for surface rupture during the last 5000 years. The scarp rather resembles an extensive debris-flow lobe. At Panfilovkoe, we estimate a Late Pleistocene minimum slip rate of 0.2 ± 0.1 mm/a, averaged over at least two, probably three earthquake cycles. Dip-slip reverse motion along segmented, moderately steep faults resulted in hanging wall collapse scarps during different events. The most recent earthquake occurred around 3.6 ± 1.3 kyr ago (1σ), with dip-slip offsets between 1.2 and 1.4 m. We calculate a probabilistic paleomagnitude to be between 6.7 and 7.2, which is in agreement with regional data from the Kyrgyz range. The morphotectonic signals in the northern Tien Shan are a prime example of deformation in a tectonically active intracontinental mountain belt and as such can help understand the longer-term coevolution of topography and seismogenic processes in similar structural settings worldwide.

Coastal Marine Terraces Define Late Quaternary Fault Activity and Deformation Within Northern East Bay Hills, San Francisco Bay Region

NASA Astrophysics Data System (ADS)

Kelson, K. I.

2004-12-01

Detailed mapping of uplifted marine platforms bordering the Carquinez Strait between Benicia and Pinole, California, provides data on the pattern and rate of late Quaternary deformation across the northern East Bay Hills. Field mapping, interpretation of early 20th-century topographic data, analysis of aerial photography, and compilation of onshore borehole data show the presence of remnants of three platforms, with back-edge elevations of about 4 m, 12 m, and 18 m. Based on U-series dates (Helley et al., 1993) and comparison of platform elevations to published sea-level curves, the 12-m-high and 18-m-high platforms correlate with substage 5e (ca. 120 ka) and stage 9 (ca. 330 ka) sea-level high stands, respectively. West of the Southhampton fault, longitudinal profiles of platform back-edges suggest that the East Bay Hills between Pinole and Vallejo have undergone block uplift at a rate of 0.05 +/- 0.01 m/ka without substantial tilting or warping. With uncertainty of <3 m, the 120 ka and 330 ka platforms are at the same elevations across the NW-striking Franklin fault. This west-vergent reverse fault previously was interpreted to have had late Pleistocene activity and to accommodate crustal shortening in the East Bay Hills. Our data indicate an absence of vertical displacement across the Franklin fault within at least the past 120ka and perhaps 330ka. In contrast, the stage 5e and 9 have up-on-the-east vertical displacement and gentle westward tilting across the N-striking Southhampton fault, with a late Pleistocene vertical slip rate of >0.02 m/ka. The northerly strike and prominent geomorphic expression of this potentially active fault differs from the Franklin fault. Our mapping of the Southhampton fault suggests that it accommodates dextral shear in the East Bay Hills, and is one of several left-stepping, en echelon N-striking faults (collectively, the "Contra Costa shear zone", CCSZ) in the East Bay Hills. Faults within this zone coincide with geomorphic

Enhanced O6-methylguanine-DNA methyltransferase activity in transgenic mice containing an integrated E. coli ada repair gene.

PubMed

Matsukuma, S; Nakatsuru, Y; Nakagawa, K; Utakoji, T; Sugano, H; Kataoka, H; Sekiguchi, M; Ishikawa, T

1989-11-01

The E. coli ada gene encodes O6-methylguanine DNA methyltransferase (O6MTase) which repairs the methylation of guanine at the O6 position in DNA. After recombination with a Chinese hamster metallothionein I gene promoter, the ada gene was microinjected into C3H/HeN mouse zygotes. Eventually, transgenic mice containing the ada fusion DNA were generated. The integrated ada DNA complex was transmitted to the progeny in a mode conforming to tandem integration at a single chromosome site, and homozygotes were also obtained from an inter-transgenic mouse cross. RNA transcripts of the chimeric ada gene were identified in the livers of these transgenic mice using dot and Northern blot analyses. O6MTase activity was increased in the liver of transgenic mice of line No. 708, and was more than 3 times the activity found in non-transgenic mice, especially in the transgenic homozygotes. The ada gene product was detected in the liver of a transgenic homozygote by immunoblot analysis. These transgenic mice have great potential for analysis of the role played by O6MTase in chemical carcinogenesis.

Comparison of a serum indirect fluorescent antibody test with two Western blot tests for the diagnosis of equine protozoal myeloencephalitis.

PubMed

Duarte, Paulo C; Daft, Barbara M; Conrad, Patricia A; Packham, Andrea E; Gardner, Ian A

2003-01-01

A serum indirect fluorescent antibody test (IFAT) was compared with a Western blot (WB) and a modified Western blot (mWB) for diagnosis of equine protozoal myeloencephalitis (EPM). Using receiver-operating characteristic (ROC) analysis, the area under the curve of the IFAT was greater than the areaunder the curves of the WB and the mWB (P = 0.025 and P = 0.044, respectively). There was no statistically significant difference between the areas under the curves of the WBs (P > 0.05). On the basis of an arbitrarily chosen cut-off titer for a positive test result of 1:80 for the IFAT and interpreting weak positive WB results as positive test results, the sensitivities and 95% confidence intervals (CI) of all 3 tests were identical and equal to 88.9% (51.8-99.7%). The specificities and 95% CIs of the IFAT, WB, and mWB test were 100% (91-100%), 87.2% (72.6-95.7%), and 69.2% (52.4-83%), respectively. The overall accuracy of the IFAT was shown to be better than that of the WBs and, therefore, the test has potential for use in the diagnosis of EPM caused by Sarcocystis neurona.

A seventeen-year epidemiological surveillance study of Borrelia burgdorferi infections in two provinces of northern Spain.

PubMed

Lledó, Lourdes; Gegúndez, María Isabel; Giménez-Pardo, Consuelo; Álamo, Rufino; Fernández-Soto, Pedro; Nuncio, María Sofia; Saz, José Vicente

2014-01-30

This paper reports a 17-year seroepidemiological surveillance study of Borrelia burgdorferi infection, performed with the aim of improving our knowledge of the epidemiology of this pathogen. Serum samples (1,179) from patients (623, stratified with respect to age, sex, season, area of residence and occupation) bitten by ticks in two regions of northern Spain were IFA-tested for B. burgdorferi antibodies. Positive results were confirmed by western blotting. Antibodies specific for B. burgdorferi were found in 13.3% of the patients; 7.8% were IgM positive, 9.6% were IgG positive, and 4.33% were both IgM and IgG positive. Five species of ticks were identified in the seropositive patients: Dermacentor marginatus (41.17% of such patients) Dermacentor reticulatus (11.76%), Rhiphicephalus sanguineus (17.64%), Rhiphicephalus turanicus (5.88%) and Ixodes ricinus (23.52%). B. burgdorferi DNA was sought by PCR in ticks when available. One tick, a D. reticulatus male, was found carrying the pathogen. The seroprevalence found was similar to the previously demonstrated in similar studies in Spain and other European countries.

What are the effects of arms control on Norway and northern waters. Research report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Furnes, R.H.

1990-04-01

Norway occupies a strategic position between the two superpowers. Her close proximity to the Soviet Union and the military bases on the Kola Peninsula make her territory attractive to both NATO and the Soviet Union. Buildups of the Soviet North Fleet and the naval base on Kola and the United States naval strategy of forward deployment, have increased the activity and the importance of northern waters. This increased importance of northern waters could challenge the Norwegian security policy. Arms reduction could make Norwegian territory relatively more important for the Soviet Union to defend her interests on Kola and in northernmore » waters and for the United States to project a threat to the Soviet interests in the area. (1) A reduction of strategic nuclear missile forces will focus on survivability. Northern waters offers excellent protection to Soviet submarines. A relative shift to SLBM could be the result of reducing the strategic nuclear missile forces. (2) The INF does not comprise sea launched intermediate nuclear missiles. Hence the elimination of land-based intermediate nuclear forces could cause a shift to sea launched nuclear missiles. START negotiations and the INF treaty could relatively increase the number of sea based strategic and intermediate nuclear forces which would relatively increase the activity and the importance of northern waters. Thus, Norway and her security policy would be affected.« less

Antimicrobial activity of gamma-thionin-like soybean SE60 in E. coli and tobacco plants.

PubMed

Choi, Yeonhee; Choi, Yang Do; Lee, Jong Seob

2008-10-17

The SE60, a low molecular weight, sulfur-rich protein in soybean, is known to be homologous to wheat gamma-purothionin. To elucidate the functional role of SE60, we expressed SE60 cDNA in Escherichia coli and in tobacco plants. A single protein band was detected by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) after anti-FLAG affinity purification of the protein from transformed E. coli. While the control E. coli cells harboring pFLAG-1 showed standard growth with Isopropyl beta-d-1-thiogalactopyranoside (IPTG) induction, E. coli cells expressing the SE60 fusion protein did not grow at all, suggesting that SE60 has toxic effects on E. coli growth. Genomic integration and the expression of transgene in the transgenic tobacco plants were confirmed by Southern and Northern blot analysis, respectively. The transgenic plants demonstrated enhanced resistance against the pathogen Pseudomonas syringae. Taken together, these results strongly suggest that SE60 has antimicrobial activity and play a role in the defense mechanism in soybean plants.

Circulation of influenza B lineages in northern Viet Nam, 2007-2014.

PubMed

Le, Thi Thanh; Pham, Thu Hang; Pham, Thi Hien; Nguyen, Le Khanh Hang; Nguyen, Co Thach; Hoang, Vu Mai Phuong; Tran, Thu Huong; Nguyen, Vu Son; Ngo, Huong Giang; Le, Quynh Mai

2015-01-01

Influenza B viruses circulate throughout Viet Nam, and their activities vary by region. There have been two antigenically distinct lineages of influenza B viruses co-circulating in the past 20 years; however, only one lineage is selected as a component of contemporary trivalent seasonal influenza vaccines. To improve the understanding of circulating influenza B lineages and influenza vaccine mismatches, we report the virus lineages circulating in northern Viet Nam over an eight-year period (2007-2014). Lineages of 331 influenza B viruses were characterized by haemagglutination inhibition assay against standard reference ferret (Yamagata) and sheep (Victoria) antisera. Sequence analysis of the haemagglutinin gene was performed in 64 selected influenza B isolates. The proportion of influenza B lineages changed by year. The Yamagata lineage predominated in 2007, 2008 and 2012; the Victoria lineage predominated in 2009-2014 except 2012. The two lineages showed continuous evolution over time. The Northern Hemisphere's influenza vaccine components were mismatched with the predominant circulating viruses in 2007, 2009 and 2014. The seasonality of influenza B activity is more variable in tropical and subtropical regions than in temperate zones. Our data showed a common co-circulation of both influenza B lineages in northern Viet Nam, and it was difficult to predict which one was the predominant lineage. Quadrivalent influenza vaccines containing both lineages may improve the effectiveness of influenza vaccine programmes in the future.

Anti-Listeria bacteriocin-producing bacteria from raw ewe's milk in northern Greece.

PubMed

Chanos, P; Williams, D R

2011-03-01

The isolation and partial characterization of anti-Listeria bacteriocin producing strains present in milk from areas of northern Greece in view of their potential use as protective cultures in food fermentations. Three hundred and thirty-two isolates were obtained from milk samples intended for Feta cheese production and gathered from 40 individual producers in Northern Greece. Isolates with anti-Listeria activity were identified by multiplex PCR as Enterococcus faecium and grouped by (GTG)(5) -PCR. The genomes of the anti-Listeria isolates were examined for the presence of known enterocin genes and major virulence genes by means of specific PCR. At least three known enterocin encoding genes were present in the genome of each of the 17 isolates. None of the 17 isolates harboured any of the virulence genes tested for or exhibited haemolytic activity. Enterococcus faecium was the dominant anti-Listeria species in the milk samples. The isolates had the potential of multiple bacteriocin production and did not exhibit some important elements of virulence. Enterococci present in milk of this area of northern Greece may be partly responsible for the safety of Feta cheese and could be useful for the production of anti-Listeria protective cultures. © 2011 The Authors. Journal of Applied Microbiology © 2011 The Society for Applied Microbiology.

Relationship Between Ecosystem Productivity and Photosynthetically Active Radiation for Northern Peatlands

NASA Technical Reports Server (NTRS)

Frolking, S. E.; Bubier, J. L.; Moore, T. R.; Ball, T.; Bellisario, L. M.; Bhardwaj, A.; Carroll, P.; Crill, P. M.; Lafleur, P. M.; McCaughey, J. H.;

Calreticulin--an endoplasmic reticulum protein with calcium-binding activity is also found in the extracellular matrix.

PubMed

Somogyi, Eszter; Petersson, Ulrika; Hultenby, Kjell; Wendel, Mikael

2003-04-01

Previous studies have reported that calreticulin (CRT), a calcium-binding and chaperoning protein, is expressed only in the endoplasmatic reticulum, nucleus and at the cell surface. In this study we clearly show that odontoblasts and predentin matrix contain CRT. To our knowledge, this is the first time CRT has been described in the extracellular matrix. The expression of CRT was studied by immunohistochemistry, ultrastructural immunocytochemistry and in situ hybridization in developing rat teeth. CRT was detected as a 59-kDa protein in rat pulp cell culture medium and dentin extracellular matrix extract by Western blotting. The presence of the protein was shown in rat odontoblasts and predentin with immunohistochemistry. At the ultrastructural level, the labeling was distributed in the rat odontoblasts, ameloblasts and predentin. Northern blotting showed the presence of CRT mRNA in rat molars, which was confirmed by in situ hybridization in odontoblasts and ameloblasts. We now present the first convincing evidence that CRT is found in extracellular matrix where it may play an important role in mineralization.

Esthetic evaluation of timber harvesting in the Northern Rockies - a progressive report

Treesearch

Dennis L. Schweitzer; James R. Ullrich; Robert E. Benson

1976-01-01

Panels of judges have been evaluating the esthetic dimension of harvested areas in the Northern Rockies. Studies conducted in Wyoming and Montana agree with intuition in that forest scenes are generally liked less as the evidence of man's activities increases.

Storm and flood of July 5, 1989, in northern New Castle County, Delaware

USGS Publications Warehouse

Paulachok, G.N.; Simmons, R.H.; Tallman, A.J.

1995-01-01

On July 5, 1989, intense rainfall from the remnants of Tropical Storm Allison caused severe flooding in northern New Castle County, Delaware. The flooding claimed three lives, and damage was estimated to be $5 million. Flood conditions were aggravated locally by rapid runoff from expansive urban areas. Record- breaking floods occurred on many streams in northern New Castle County. Peak discharges at three active, continuous-record streamflow-gaging stations, one active crest-stage station, and at two discontinued streamflow-gaging stations exceeded previously recorded maximums. Estimated recurrence intervals for peak flow at the three active, continuous-record streamflow stations exceeded 100 years. The U.S. Geological Survey conducted comprehensive post-flood surveys to determine peak water-surface elevations that occurred on affected streams and their tributaries during the flood of July 5, 1989. Detailed surveys were performed near bridge crossings to provide additional information on the extent and severity of the flooding and the effects of hydraulic constrictions on floodwaters.

Prevalence of Dementia and Main Subtypes in Rural Northern China

PubMed Central

Ji, Yong; Shi, Zhihong; Zhang, Ying; Liu, Shuling; Liu, Shuai; Yue, Wei; Liu, Mengyuan; Huo, Ya Ruth; Wang, Jinhuan; Wisniewski, Thomas

2016-01-01

Background/Aims The aim of this article was to estimate the prevalence of and to determine the sociodemographic risk factors for dementia, Alzheimer’s disease (AD) and vascular dementia (VaD) among individuals residing in rural northern China. Methods Between 2011 and 2012, residents aged ≥ 60 years and residing in rural areas of northern China were clinically assessed for symptoms of dementia, AD and VaD. Diagnoses were made using established criteria and standard procedures. Results Among 5,578 enrolled study participants aged ≥ 60 years, the prevalence rates of dementia, AD and VaD were 7.7, 5.4 and 1.7%, respectively. Older age (OR = 1.17; 95% CI: 1.14–1.19) and female gender (OR = 2.13; 95% CI: 1.51–3.00) were identified as independent risk factors for AD. In turn, a higher educational level (OR = 0.36; 95% CI: 0.21–0.60) and engagement in social activities (OR = 0.219; 95% CI: 0.163–0.295) were protective factors. Risk factors associated with VaD were older age (OR = 1.11; 95% CI: 1.1– 1.12) and hypertension (OR = 1.83; 95% CI: 1.18–2.86), while a higher educational level (OR = 0.53, 95% CI: 0.44–0.65) and engagement in social activities (OR = 0.34; 95% CI: 0.29–0.41) were protective factors. Conclusion High rates of dementia (7.7%) and AD (5.4%) were found in the rural areas of northern China. Older age and female gender were identified as risk factors for AD, while older age and hypertension were risk factors for VaD. A higher educational level and engagement in social activities were identified as protective factors against both AD and VaD. PMID:25792116

Neogene carbonate exploration play concepts for Northern New Guinea: New iteration from field work and seismic stratigraphy along the Northern New Guinea Fault Zone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pigott, J.D.; Geiger, C.

1994-07-01

Recent field reconnaissance, petrography, nanno and foraminifera age determinations, and seismic stratigraphy of the Sepik and Piore subbasins of northern New Guinea reveal the existence of an extensive, tectonically unstable, Miocene-Pliocene carbonate shelf system. These findings represent the first recorded evidence of northern Papuan limestones coeval in age to those of the hydrocarbon productive Salawati Basin of Irian Jaya. Moreover, these observations also demonstrate the significance of episodic activities of the northern New Guinea fault zone upon the changes in carbonate sedimentation and diagenesis. During the Neogene, algal biosparites to foraminiferal biomicrites defined the clean portion of a mixed clastic-carbonatemore » shelf system of the northern New Guinea basin, which began at the central New Guinea cordillera and deepened northward. This shelf was interrupted by coral-coralline algal boundstone fringing- to patch-reef buildups with associated skeletal grainstones. Clean carbonates were spatially and temporally restricted to basement blocks, which episodically underwent uplift while terrigenous dilutes carbonates were more common in adjacently subsiding basement block bathymetric lows. These tectonic expressions were caused by the spatially transient nature of constraining bends of the evolving north New Guinea faults. As shown by seismic stratigraphy, by the late Miocene to the early Pliocene the uplift of the Bewani-Torricelli Mountains sagittally divided the shelf of the northern New Guinea basin into the Ramu-Sepik and the Piore basins. Continued regional sinistral transpression between the Pacific and the New Guinea leading edge of the Indo-Australian plates led to the reverse tilting of the Piore basin, the shallowing of the former distal shelf with concomitant extensive biolithite development (e.g., on subsiding volcanic islands) eventual uplifting of the Oenake Range, and en echelon faulting of the Bewani-Torricelli Mountains.« less

Eighteen Years of Molecular Genotyping the Hemophilia Inversion Hotspot: From Southern Blot to Inverse Shifting-PCR

PubMed Central

Rossetti, Liliana C.; Radic, Claudia P.; Abelleyro, Miguel M.; Larripa, Irene B.; De Brasi, Carlos D.

2011-01-01

The factor VIII gene (F8) intron 22 inversion (Inv22) is a paradigmatic duplicon-mediated rearrangement, found in about one half of patients with severe hemophilia A worldwide. The identification of this prevalent cause of hemophilia was delayed for nine years after the F8 characterization in 1984. The aim of this review is to present the wide diversity of practical approaches that have been developed for genotyping the Inv22 (and related int22h rearrangements) since discovery in 1993. The sequence— Southern blot, long distance-PCR and inverse shifting-PCR—for Inv22 genotyping is an interesting example of scientific ingenuity and evolution in order to resolve challenging molecular diagnostic problems. PMID:22072947

Evaporite karst of northern lower Michigan

USGS Publications Warehouse

Black, T.J.

1997-01-01

Michigan has three main zones of evaporite karst: collapse breccia in Late Silurian deposits of the Mackinac Straits region; breccia, collapse sinks, and mega-block collapse in Middle Devonian deposits of Northern Lower Michigan, which overlaps the preceding area; and areas of soil swallows in sinks of Mississippian deposits between Turner and Alabaster in Arenac and Iosco counties, and near Grand Rapids in Kent County. The author has focused his study on evaporite karst of the Middle Devonian deposits. The Middle Devonian depos its are the Detroit River Group: a series consisting of limestone, dolomite, shale, salt, gypsum, and anhydrite. The group occurs from subcrop, near the surface, to nearly 1400 feet deep from the northern tip of the Southern Peninsula to the south edge of the "solution front" Glacial drift is from zero to 350 feet thick. Oil and gas exploration has encountered some significant lost-circulation zones throughout the area. Drilling without fluid returns, casing-seal failures, and lost holes are strong risks in some parts of the region. Lost fluid returns near the top of the group in nearby areas indicate some karst development shortly after deposition. Large and irregular lost-circulation zones, linear and patch trends of large sink holes, and 0.25 mile wide blocks of down-dropped land in the northern Lower Peninsula of Michigan were caused by surface- and ground-water movement along faults into the Detroit River Group. Glaciation has removed some evidence of the karst area at the surface. Sinkhole development, collapse valleys, and swallows developed since retreat of the glacier reveal an active solution front in the Detroit River Group.

Plate tectonics of the northern part of the Pacific Ocean

NASA Astrophysics Data System (ADS)

Verzhbitsky, E. V.; Kononov, M. V.; Kotelkin, V. D.

2007-10-01

Geophysical data on the northern part of the Pacific Ocean were systematized to compile a map of geomagnetic and geothermal studies of the Bering Sea. The absence of reliable data about the formation time of the Bering Sea structures of oceanic and continental origins is noted; this hampered the assessment of the geodynamical processes in the North Pacific. Based on the geophysical data, we estimated the age of the structures of the Bering Sea floor such as the Commander Basin (21 My), the Shirshov Ridge (95 and 33 My in the northern and southern parts, respectively), the Aleutian Basin (70 My), the Vitus Arch (44 My), the Bowers Ridge (30 My), and the Bowers Basin (40 My). These values are confirmed by the geological, geophysical, and kinematic data. A numerical modeling of the formation of extensive regional structures (Emperor Fracture Zone, Chinook Trough, and others) in the Northern Pacific is carried out. A conclusion was made on the basis of the geological and geothermal analysis that the northern and southern parts of the Shirshov Ridge have different geological ages and different tectonic structures. The northern part of the ridge is characterized by an upthrust-nappe terrain origin, while the southern part has originated from a torn-away island arc similar to the origin of the Bowers Ridge. The sea floor of the Aleutian Basin represents a detached part of the Upper Cretaceous Kula plate, on which spreading processes took place in the Vitus Arch area in the Eocene. The final activity phase in the Bering Sea began 21 My B.P. by spreading of the ancient oceanic floor of the Commander Basin. Based on the age estimations of the structures of the Bering Sea floor, the results of the modeling of the process of formation of regional fracture zones and of the geomagnetic, geothermal, tectonic, geological, and structural data, we calculated and compiled a kinematic model (with respect to a hot spot reference system) of the northern part of the Pacific Ocean for 21

U.S. Northern Command > Newsroom > Press Releases

Science.gov Websites

Skip to main content (Press Enter). Toggle navigation U.S. Northern Command Search Search USNORTHCOM: Search Search USNORTHCOM: Search U.S. Northern Command U.S. Northern Command Home Leadership , 2018 NORAD and USNORTHCOM to host change of command ceremony Nov. 30, 2017 United States, Mexico to

The continent-ocean transition at the mid-northern margin of the South China Sea

NASA Astrophysics Data System (ADS)

Gao, Jinwei; Wu, Shiguo; McIntosh, Kirk; Mi, Lijun; Yao, Bochu; Chen, Zeman; Jia, Liankai

2015-07-01

The northern margin of the South China Sea (SCS) has particular structural and stratigraphic characteristics that are somewhat different from those described in typical passive margin models. The differences are attributable to poly-phase tectonic movements and magmatic activity resulting from the interaction among the Eurasian, Philippine Sea and Indo-Australian plates. Based on several crustal-scale multi-channel seismic reflection profiles and satellite gravity data across the northern SCS margin, this paper analyzes the structures, volcanoes and deep crust of the continent-ocean transition zone (COT) at the mid-northern margin of the SCS to study the patterns and model of extension there. The results indicate that the COT is limited landward by basin-bounding faults near Baiyun sag and is bounded by seaward-dipping normal faults near the oceanic basin in our seismic lines. The shallow anatomy of the COT is characterized by rift depression, structural highs with igneous rock and/or a volcanic zone or a zone of tilted fault blocks at the distal edge. Gravity modeling revealed that a high velocity layer (HVL) with a 0.8-6-km thickness is frequently present in the slope below the lower crust. Our study shows that the HVL is only located in the eastern portion of the northern SCS margin based on the available geophysical data. We infer from this that the presence of an HVL is not required in the COT at the northern SCS margin. The magmatic intrusions and HVL may be related to partial melting caused by the decompression of a passive, upwelling asthenosphere, which resulted primarily in post-rifting underplating and magmatic emplacement or modification of the crust. Based on this study, we propose that an intermediate mode of rifting was active in the mid-northern margin of the SCS with characteristics that are closer to those of the magma-poor margins than those of volcanic margins.

Neotectonics and fluvial geomorphology of the Northern Sinai Peninsula

NASA Astrophysics Data System (ADS)

Kusky, T.; El-Baz, F.

2000-08-01

Large anticlinal ridges of Jurassic-Tertiary limestone in the northern Sinai Peninsula are part of the Syrian Arc Fold Belt, parts of which have been active intermittently from Late Cretaceous through the present. Recent uplift of the Syrian Arc Fold Belt is supported by quantitative indices of active tectonics including low values of mountain front sinuosity and, by recent seismicity, extending southwest past Cairo into the Fayoum Depression. The northern Sinai Desert has a climate similar to that of the adjacent part of the eastern Sahara. Sand sheets and dune fields cover its northwestern part, which is a depression extending from the Suez Canal to Wadi El-Arish. Numerous dry channels of palaeorivers and streams lead into this depression, where several temporary palaeolakes and flood overbank deposits have been identified. Some of the temporary pluvial palaeolakes developed behind natural dams formed by folds of the Syrian Arc, whereas others filled deeply-eroded fault traces. Migration of sand dunes may have blocked some channels, but the location of the dunes seems to be controlled by Recent uplift of parts of the fold belt, with the dunes residing in synclinal depressions and adjacent to fault scarps. The palaeolakes are correlated more with structures than with active dune fields. Wadi El-Arish abandoned a channel west of its present-day course, perhaps because of recent growth and uplift of the Gebel Halal Fold. This abandonment was synchronous with down-cutting of a gorge through Gebel Halal, which follows conjugate faults formed during uplift of an anticline. The presence of standing water during wetter climates in the past is supported by silt deposits and archaeological evidence of previous human habitation. The newly identified lake margin and fluvial sediments could be important targets for studying early-modern human and Neanderthal activities. In the eastern Sahara, cycles of pluvial periods that date back 320,000 years appear to correspond to

The Evolution of Northern Hemisphere Glaciation

NASA Astrophysics Data System (ADS)

Wright, J. D.

2001-05-01

For much of the last 50 million years, high-latitude regions remained too warm to allow snow to accumulate and form ice sheets. Shackleton et al. (1984) published a landmark paper correlating the first occurrence of ice-rafted detritus (IRD) observed at Rockall Plateau with a prominent increase in benthic foraminiferal d18O values during the late Pliocene. These late Pliocene to Pleistocene ice sheets were modulated on an orbital frequency and have characterized the global climate over the past 2.6 myr (Shackleton and Opdyke, 1973; Shackleton et al., 1984; Ruddiman, et al., 1986). During the early Pliocene, northern hemisphere glaciation (NHG) variations were less significant (Jansen et al., 1993). Our understanding of the Plio-Pleistocene ice sheet cycles can be viewed from two different perspectives. When viewed from the late Pleistocene, the fundamental question is what changed near the early/late Pliocene boundary to produce the large-scale, glacial-interglacial cycles of the past 2.6 Ma. In contrast, the view from the middle to late Miocene is quite different. Since the pioneering work of Shackleton et al. (1984), the record of NHG has been extended further back in time with drilling in the Norwegian Sea (ODP Leg 104). At Sites 642 and 644, IRD was found throughout the late Miocene and back to ~12 Ma. More recent drilling in the high northern latitudes occurred on ODP Leg 151. Site 909 recovered a middle Miocene section from the Fram Straits with rounded quartz grains that were interpreted as IRD (Wolf-Welling et al., 1996). Age estimates for those sediments place the first northern hemisphere ice sheets at least as old as 14 Ma. The occurrence of sand-sized particles (>1000 μm) and coal below this level indicates the possibility of glacial activity in the Northern Hemisphere as early as 16 Ma. Thus, the late Pliocene to Pleistocene cycles appear to be the resumption of the glacial-interglacial pattern that began during the Miocene. While the Miocene ice

Changes in the relationship NAO-Northern hemisphere temperature due to solar activity

NASA Astrophysics Data System (ADS)

Gimeno, Luis; de la Torre, Laura; Nieto, Raquel; García, Ricardo; Hernández, Emiliano; Ribera, Pedro

2003-01-01

The influence of the North Atlantic Oscillation (NAO) on wintertime Northern Hemisphere Temperature (NHT) is investigated. The results suggest that this relationship has different sign according to the phase of the solar cycle. For solar maximum phases NAO and NHT are positively correlated - a result assumed up to the moment - but for solar minimum phases correlations are not significant or even negative. This result is in agreement with the different extension of the NAO for solar cycle phases [Kodera, Geophys. Res. Lett. 29 (2002) 14557-14560] - almost hemispheric for maximum phases and confined to the eastern Atlantic for minimum phases.

Da0324, an inhibitor of nuclear factor-κB activation, demonstrates selective antitumor activity on human gastric cancer cells

PubMed Central

Jin, Rong; Xia, Yiqun; Chen, Qiuxiang; Li, Wulan; Chen, Dahui; Ye, Hui; Zhao, Chengguang; Du, Xiaojing; Shi, Dengjian; Wu, Jianzhang; Liang, Guang

2016-01-01

Background The transcription factor nuclear factor-κB (NF-κB) is constitutively activated in a variety of human cancers, including gastric cancer. NF-κB inhibitors that selectively kill cancer cells are urgently needed for cancer treatment. Curcumin is a potent inhibitor of NF-κB activation. Unfortunately, the therapeutic potential of curcumin is limited by its relatively low potency and poor cellular bioavailability. In this study, we presented a novel NF-κB inhibitor named Da0324, a synthetic asymmetric mono-carbonyl analog of curcumin. The purpose of this study is to research the expression of NF-κB in gastric cancer and the antitumor activity and mechanism of Da0324 on human gastric cancer cells. Methods The expressions between gastric cancer tissues/cells and normal gastric tissues/cells of NF-κB were evaluated by Western blot. The inhibition viability of compounds on human gastric cancer cell lines SGC-7901, BGC-823, MGC-803, and normal gastric mucosa epithelial cell line GES-1 was assessed with the 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide assay. Absorption spectrum method and high-performance liquid chromatography method detected the stability of the compound in vitro. The compound-induced changes of inducible NF-κB activation in the SGC-7901 and BGC-823 cells were examined by Western blot analysis and immunofluorescence methods. The antitumor activity of compound was performed by clonogenic assay, matrigel invasion assay, flow cytometric analysis, Western blot analysis, and Hoechst 33258 staining assay. Results High levels of p65 were found in gastric cancer tissues and cells. Da0324 displayed higher growth inhibition against several types of gastric cancer cell lines and showed relatively low toxicity to GES-1. Moreover, Da0324 was more stable than curcumin in vitro. Western blot analysis and immunofluorescence methods showed that Da0324 blocked NF-κB activation. In addition, Da0324 significantly inhibited tumor proliferation

The genus Artemisia L. in the northern region of Saudi Arabia: essential oil variability and antibacterial activities.

PubMed

Guetat, Arbi; Al-Ghamdi, Faraj A; Osman, Ahmed K

2017-03-01

Four species of the genus Artemisia L. (Artemisia monosperma, Artemisia scoparia, Artemisia judaica and Artemisia sieberi) growing in the northern region of Saudi Arabia were investigated with respect to their volatile oil contents. The yield of oil varied between 0.30 and 0.41%, % (w/w). A. monosperma showed the highest number of compounds with 30 components representing 93.78% of oil composition. However, A. judaica showed the lowest number of compounds with only 16 components representing 87.47% of essential oil. A. scoparia and A. sieberi are both composed of 17 components, representing 97.14 and 94.2% of total oil composition. A. sieberi and A. judaica were dominated by spathulenol (30.42 and 28.41%, respectively). For A. monosperma, butanoic acid (17.87%) was a major component. However, A. scoparia was a chemotype of acenaphthene. (83.23%). Essential oil of studied species showed high antibacterial activities against common human pathogens.

Prescribed fire effects on wintering, bark-foraging birds in northern Arizona

Treesearch

Theresa L. Pope; William M. Block; Paul Beier

2009-01-01

We examined effects of prescribed fire on 3 wintering, bark-foraging birds, hairy woodpeckers (Picoides villosus), pygmy nuthatches (Sitta pygmaea), and white-breasted nuthatches (S. carolinensis), in ponderosa pine (Pinus ponderosa) forests of northern Arizona, USA. During winters of 2004-2006, we compared bird density, foraging behavior, and bark beetle activity...

Reverse line blot hybridisation screening of Pseudallescheria/Scedosporium species in patients with cystic fibrosis.

PubMed

Lu, Q; van den Ende, A H G Gerrits; de Hoog, G S; Li, R; Accoceberry, I; Durand-Joly, I; Bouchara, J-P; Hernandez, F; Delhaes, L

2011-10-01

The PCR-RLB (reverse line blot hybridisation) was applied as a molecular technique for the detection of members of Pseudallescheria and Scedosporium from sputum of patients with cystic fibrosis (CF). Fifty-nine sputum samples were collected from 52 CF patients, which were analysed by culture and PCR-RLB. Conventional and semi-selective culture yielded five positive samples, but the PCR-RLB hybridisation assay permitted the detection of members of Pseudallescheria/Scedosporium in 32 out of 52 patients (61.5%). In total, PCR-RLB yielded 47 positives. Pseudallescheria apiosperma was detected in 20 samples, while Pseudallescheria boydii and Pseudallescheria aurantiacum were detected in 17 and eight samples, respectively. Six samples gave a positive reaction with two distinct species-specific probes and one sample with three probes. In conclusion, the PCR-RLB assay described in this study allows the detection of Scedosporium spp. in CF sputum samples and the identification of Pseudallescheria apiosperma, P. boydii, S. aurantiacum, Scedosporium prolificans and Pseudallescheria minutispora. © 2011 Blackwell Verlag GmbH.

Northern Eurasia Future Initiative: Facing the Challenges of Global Change in the 21st century

NASA Astrophysics Data System (ADS)

Groisman, P. Y.; Gulev, S.; Maksyutov, S. S.; Qi, J.

2015-12-01

During the past 10 years, the Northern Eurasia Earth Science Partnership Initiative (NEESPI) - an interdisciplinary program of internationally-supported Earth systems and science research - has addressed large-scale and long-term manifestations of climate and environmental changes over Northern Eurasia and their impact on the Global Earth system. With more than 1480 peer-reviewed journal publications and 40 books to its credit, NEESPI's activities resulted in significant scientific outreach. This created a new research realm through self-organization of NEESPI scientists in a broad research network, accumulation of knowledge while developing new tools (observations, models, and collaborative networks) and producing new, exciting results that can be applied to directly support decision-making for societal needs. This realm was summed up at the Synthesis NEESPI Workshop in Prague, Czech Republic (April 9-12, 2015) where it was decided to shift gradually the foci of regional studies in Northern Eurasia towards applications with the following major Science Question: " What dynamic and interactive change(s) will affect societal well-being, activities, and health, and what might be the mitigation and adaptation strategies that could support sustainable development and decision-making activities in Northern Eurasia?". To answer this question requires a stronger socio-economic component in the ongoing and future regional studies focused on sustainable societal development under changing climatic and environmental conditions, especially, under conditions when societal decision-making impacts and feeds back on the environment. This made the NEESPI studies closer to the ICSU research initiative "Future Earth". Accordingly, the NEESPI Research Team decided to reorganize in the nearest future NEESPI into "Northern Eurasia Future Initiative" (NEFI) and began development of its Programmatic White Paper (in preparation at the time of this abstract submission). The NEFI research

Characterization and promoter activity of chromoplast specific carotenoid associated gene (CHRC) from Oncidium Gower Ramsey.

PubMed

Chiou, Chung-Yi; Wu, Keqiang; Yeh, Kai-Wun

2008-10-01

Tissue-specific promoters are required for plant molecular breeding to drive a target gene in the appropriate location in plants. A chromoplast-specific, carotenoid-associated gene (OgCHRC) and its promoter (Pchrc) were isolated from Oncidium orchid and characterized. Northern blot analysis revealed that OgCHRC is specifically expressed in flowers, not in roots and leaves. Transient expression assay of Pchrc by bombardment transformation confirmed its differential expression pattern in floral tissues of different horticulture plants and cell-type location in conical papillate cells of adaxial epidermis of flower. These results suggest that Pchrc could serve as a useful tool in ornamental plant biotechnology to modify flower color.

Kinematic analysis of recent and active faults of the southern Umbria-Marche domain, Northern Apennines, Italy: geological constraints to geodynamic models

NASA Astrophysics Data System (ADS)

Pasqui, Valeria; Viti, Marcello; Mantovani, Enzo

2013-04-01

The recent and active deformation that affects the crest zone of the Umbria-Marche belt (Northern Apennines, Italy) displays a remarkable extensional character, outlined by development of normal fault sets that overprint pre-existing folds and thrusts of Late Miocene-Early Pliocene age. The main extensional fault systems often bound intermontane depressions hosting recent, mainly continental, i.e. fluvial or lacustrine deposits, separating the latter from Triassic-Miocene, mainly carbonatic and siliciclastic marine rocks that belong to the Romagna-Umbria-Marche stratigraphic succession. Stratigraphic data indicate that the extensional strain responsible for the development of normal fault-bounded continental basins in the outer zones of the Northern Apennines was active until Middle Pleistocene time. Since Middle Pleistocene time onwards a major geodynamic change has affected the Central Mediterranean region, with local reorganization of the kinematics in the Adria domain and adjacent Apennine belt. A wide literature illustrates that the overall deformation field of the Central Mediterranean area is presently governed by the relative movements between the Eurasia and Africa plates. The complex interaction of the Africa-Adria and the Anatolian-Aegean-Balkan domains has led the Adria microplate to migrate NW-ward and to collide against Eurasia along the Eastern Southern Alps. As a consequence Adria is presently moving with a general left-lateral displacement with respect to the Apennine mountain belt. The sinistral component of active deformations is also supported by analysis of earthquake focal mechanisms. A comparison between geophysical and geological evidence outlines an apparent discrepancy: most recognized recent and active faults display a remarkable extensional character, as shown by the geometry of continental basin-bounding structutes, whereas geodetic and seismologic evidence indicates the persistency of an active strike-slip, left-lateral dominated

Characterization of Northern California petroleum by stable carbon isotopes

USGS Publications Warehouse

Lillis, Paul G.; Magoon, Leslie B.; Stanley, Richard G.; McLaughlin, Robert J.; Warden, Augusta

2001-01-01

The purpose of this study is to characterize natural occurrences of petroleum at the surface and in the subsurface within northern California in order to define and map petroleum systems for U.S. Geological Survey energy resource assessments. Furthermore, the chemical characterization and mapping of natural petroleum occurrences could also be used to discriminate natural occurrences from accidental oil spills during the activities of extraction or transportation of petroleum. Samples include petroleum from exploratory well tests, producing fields, natural seeps, and oil-stained rocks, and condensates from gas wells. Most of the sample localities are in northern California but a few samples from central and southern California are included for comparison (table 1). Even though other analyses were performed, only stable carbon isotope (δ13C) data are presented here for brevity and because δ13C values are one of the most discriminating characteristics of California petroleum.

Preliminary digital map of cryptocrystalline occurrences in northern Nevada

USGS Publications Warehouse

Moyer, Lorre A.

1999-01-01

The purpose was to identify potential cryptocrystalline material sources for tools used by indigenous people of the northern Nevada portion of the Great Basin. Cryptocrystalline occurrence data combed from the U.S. Geological Survey's Mineral Resources Data System (MRDS, 1995) were combined with sites described in Nevada rockhound guides and entered into a geographic information system (GIS). The map area encompasses northern Nevada (fig.1). This open-file report describes the methods used to convert cryptocrystalline occurrence data into a digital format, documents the file structures, and explains how to download the digital files from the U.S. Geological Survey's World Wide Web site. Uses of the spatial dataset include, but are not limited to, natural and cultural resource management, interdisciplinary activities, recreational rockhounding, and gold exploration. It is important to note that the accuracy of the spatial data varies widely, and for some purposes, field checks are advised.

The equine herpesvirus-1 IR3 gene that lies antisense to the sole immediate-early (IE) gene is trans-activated by the IE protein, and is poorly expressed to a protein

PubMed Central

Ahn, Byung Chul; Breitenbach, Jonathan E.; Kim, Seong K.; O’Callaghan, Dennis J.

2007-01-01

The unique IR3 gene of equine herpesvirus 1 (EHV-1) is expressed as a late 1.0-kb transcript. Previous studies confirmed the IR3 transcription initiation site and tentatively identified other cis-acting elements specific to IR3 such as a TATA box, a 443 base pair 5′untranslated region (UTR), a 285 base pair open reading frame (ORF) and a poly adenylation (A) signal (Holden et al., 1992 DNA Seq 3, 143-52). Transient transfection assays revealed that the IR3 promoter is strongly trans-activated by the IE protein (IEP) and that coexpression of the IEP with the early EICP0 and IR4 regulatory proteins results in maximal trans-activation of the IR3 promoter. Gel shift assays revealed that the IEP directly binds to the IR3 promoter region. Western blot analysis showed that the IR3 protein produced in E. coli was detected by antibodies to IR3 synthetic peptides; however, the IR3 protein was not detected in EHV-1 infected cell extracts by these same anti-IR3 antibodies, even though the IR3 transcript was detected by northern blot. These findings suggest that the IR3 may not be expressed to a protein. Expression of an IR3/GFP fusion gene was not observed, but expression of a GFP/IR3 fusion gene was detected by fluorescent microscopy. In further attempts to detect the IR3/GFP fusion protein using anti-GFP antibody, western blot analysis showed that the IR3/GFP fusion protein was not detected in vivo. Interestingly, a truncated form of the GFP/IR3 protein was synthesized from the GFP/IR3 fusion gene. However, GFP/IR3 and IR3/GFP fusion proteins of the predicted sizes were synthesized by in vitro coupled transcription and translation of the fusion genes, suggesting poor expression of the IR3 protein in vivo. The possible role of the IR3 transcript in EHV-1 infection is discussed. PMID:17306852

Sucrose Synthase Expression during Cold Acclimation in Wheat 1

PubMed Central

Crespi, Martin D.; Zabaleta, Eduardo J.; Pontis, Horacio G.; Salerno, Graciela L.

1991-01-01

When wheat (Triticum aestivum) seedlings are exposed to a cold temperature (2-4°C) above 0°C, sucrose accumulates and sucrose synthase activity increases. The effect of a cold period on the level of sucrose synthase (SS) was investigated. Using antibodies against wheat germ SS, Western blots studies showed that the amount of the SS peptide increased during 14 days in the cold, when plants were moved from 23°C to 4°C. The level of SS diminished when plants were moved back to 23°C. Northern blots of poly(A)+ RNA, confirmed a five- to sixfold induction of SS in wheat leaves during cold acclimation. These results indicate that SS is involved in the plant response to a chilling stress. ImagesFigure 1Figure 2Figure 3 PMID:16668270

Canada's new medical school: The Northern Ontario School of Medicine: social accountability through distributed community engaged learning.

PubMed

Strasser, Roger P; Lanphear, Joel H; McCready, William G; Topps, Maureen H; Hunt, D Dan; Matte, Marie C

2009-10-01

Like many rural regions around the world, Northern Ontario has a chronic shortage of doctors. Recognizing that medical graduates who have grown up in a rural area are more likely to practice in the rural setting, the Government of Ontario, Canada, decided in 2001 to establish a new medical school in the region with a social accountability mandate to contribute to improving the health of the people and communities of Northern Ontario. The Northern Ontario School of Medicine (NOSM) is a joint initiative of Laurentian University and Lakehead University, which are located 700 miles apart. This paper outlines the development and implementation of NOSM, Canada's first new medical school in more than 30 years. NOSM is a rural distributed community-based medical school which actively seeks to recruit students into its MD program who come from Northern Ontario or from similar northern, rural, remote, Aboriginal, Francophone backgrounds. The holistic, cohesive curriculum for the MD program relies heavily on electronic communications to support distributed community engaged learning. In the classroom and in clinical settings, students explore cases from the perspective of physicians in Northern Ontario. Clinical education takes place in a wide range of community and health service settings, so that the students experience the diversity of communities and cultures in Northern Ontario. NOSM graduates will be skilled physicians ready and able to undertake postgraduate training anywhere, but with a special affinity for and comfort with pursuing postgraduate training and clinical practice in Northern Ontario.

Introduction to "northern Gulf of Mexico ecosystem change and hazards susceptibility"

USGS Publications Warehouse

Brock, J.C.; Lavoie, D.L.; Poore, R.Z.

2009-01-01

The northern Gulf of Mexico and its diverse natural resources are threatened by population and development pressure, and by the impacts of rising sea level and severe storms. In the wake of the devastating 2005 hurricane season, and in response to the complex management issues facing the region, the U.S. Geological Survey organized the multidisciplinary "Northern Gulf of Mexico Ecosystem Change and Hazards Susceptibility" project. This special issue of Geo-Marine Letters hosts a few of the early results in the form of 11 papers covering three themes: (1) the control exerted by the underlying geologic framework on geomorphology and nearshore processes and features; (2) impact of human activities on nearshore water quality; and (3) hurricanes and associated effects. ?? 2009 US Government.

Impacts of the active layer on runoff in an upland permafrost basin, northern Tibetan Plateau

PubMed Central

Zhang, Tingjun; Guo, Hong; Hu, Yuantao; Shang, Jianguo; Zhang, Yulan

2018-01-01

The paucity of studies on permafrost runoff generation processes, especially in mountain permafrost, constrains the understanding of permafrost hydrology and prediction of hydrological responses to permafrost degradation. This study investigated runoff generation processes, in addition to the contribution of summer thaw depth, soil temperature, soil moisture, and precipitation to streamflow in a small upland permafrost basin in the northern Tibetan Plateau. Results indicated that the thawing period and the duration of the zero-curtain were longer in permafrost of the northern Tibetan Plateau than in the Arctic. Limited snowmelt delayed the initiation of surface runoff in the peat permafrost in the study area. The runoff displayed intermittent generation, with the duration of most runoff events lasting less than 24 h. Precipitation without runoff generation was generally correlated with lower soil moisture conditions. Combined analysis suggested runoff generation in this region was controlled by soil temperature, thaw depth, precipitation frequency and amount, and antecedent soil moisture. This study serves as an important baseline to evaluate future environmental changes on the Tibetan Plateau. PMID:29470510

Impacts of the active layer on runoff in an upland permafrost basin, northern Tibetan Plateau.

PubMed

Gao, Tanguang; Zhang, Tingjun; Guo, Hong; Hu, Yuantao; Shang, Jianguo; Zhang, Yulan

2018-01-01

The paucity of studies on permafrost runoff generation processes, especially in mountain permafrost, constrains the understanding of permafrost hydrology and prediction of hydrological responses to permafrost degradation. This study investigated runoff generation processes, in addition to the contribution of summer thaw depth, soil temperature, soil moisture, and precipitation to streamflow in a small upland permafrost basin in the northern Tibetan Plateau. Results indicated that the thawing period and the duration of the zero-curtain were longer in permafrost of the northern Tibetan Plateau than in the Arctic. Limited snowmelt delayed the initiation of surface runoff in the peat permafrost in the study area. The runoff displayed intermittent generation, with the duration of most runoff events lasting less than 24 h. Precipitation without runoff generation was generally correlated with lower soil moisture conditions. Combined analysis suggested runoff generation in this region was controlled by soil temperature, thaw depth, precipitation frequency and amount, and antecedent soil moisture. This study serves as an important baseline to evaluate future environmental changes on the Tibetan Plateau.

Phenology of the Hemlock Woolly Adelgid (Hemiptera: Adelgidae) in Northern Georgia

Treesearch

Shimar V. Joseph; Albert E. Mayfield; Mark J. Dalusky; Christopher Asaro; C. Wayne. Berisford

2011-01-01

Understanding the seasonal phenology of an insect pest in a specific geographic region is essential for optimizing the timing of management actions or research activities. We examined the phenology of hemlock woolly adelgid, Adelges tsugae Annand, near the southern limit of the range of eastern hemlock, Tsuga canadensis (L.) Carriere, in the Appalachians of northern...

Label-free DNA quantification via a 'pipette, aggregate and blot' (PAB) approach with magnetic silica particles on filter paper.

PubMed

Li, Jingyi; Liu, Qian; Alsamarri, Hussein; Lounsbury, Jenny A; Haversitick, Doris M; Landers, James P

2013-03-07

Reliable measurement of DNA concentration is essential for a broad range of applications in biology and molecular biology, and for many of these, quantifying the nucleic acid content is inextricably linked to obtaining optimal results. In its most simplistic form, quantitative analysis of nucleic acids can be accomplished by UV-Vis absorbance and, in more sophisticated format, by fluorimetry. A recently reported new concept, the 'pinwheel assay', involves a label-free approach for quantifying DNA through aggregation of paramagnetic beads in a rotating magnetic field. Here, we describe a simplified version of that assay adapted for execution using only a pipet and filter paper. The 'pipette, aggregate, and blot' (PAB) approach allows DNA to induce bead aggregation in a pipette tip through exposure to a magnetic field, followed by dispensing (blotting) onto filter paper. The filter paper immortalises the extent of aggregation, and digital images of the immortalized bead conformation, acquired with either a document scanner or a cell phone camera, allows for DNA quantification using a noncomplex algorithm. Human genomic DNA samples extracted from blood are quantified with the PAB approach and the results utilized to define the volume of sample used in a PCR reaction that is sensitive to input mass of template DNA. Integrating the PAB assay with paper-based DNA extraction and detection modalities has the potential to yield 'DNA quant-on-paper' devices that may be useful for point-of-care testing.

[Western Blot diagnostic yield for simultaneous antibody-detection in patients with human cysticercosis, hydatidosis, and human fascioliasis].

PubMed

Davelois, Kelly; Escalante, Hermes; Jara, César

2016-01-01

. To determine the diagnostic yield using western blotting to simultaneously detect antibodies in patients with human cysticercosis, hydatidosis, and human fascioliasis. Materials and methods . Cross-sectional study of diagnostic yield assessment. Excretory/secretory antigens were obtained from Taenia solium larvae, Echinococcus granulosus cysts, and the adult flukes of Fasciola hepática, which were then separated using the polyacrylamide gel electrophoresis technique, transferred, and attached to a nitrocellulose membrane to be probed with sera from the patient infected with the three parasites. The sensitivity of the technique was assessed using 300 individual serum samples, 60 pools of two parasites, and 20 pools of three parasites with 75 sera from patients with other parasites, 10 from patients with other diseases, and 15 from patients without parasites. Results . The technique revealed 13 glycoproteins (GP): GP 35, 31, 24, 23, 18, 17, 14, and 13 kDa for cysticercosis; GP 8, 16, and 21 kDa for hydatidosis; and GP 17 and 23 kDa for fascioliasis. The test detected the presence of antibodies with a sensitivity of 96% (95% confidence interval [CI] = 94.62-98.54%) in the detection of one or the thirteen bands, a specificity of 100% (95% CI = 99.50-100.00%); individually, there was a sensitivity for cysticercosis of 97% (95% CI = 93.16-100.00%), for hydatidosis of 94% (95% CI = 88.85-99.15%) and for fascioliasis of 96% (95% CI = 91.66-100.00%). Conclusions . Western blotting is effective in the simultaneous detection of antibodies in patients with human cysticercosis, hydatidosis, and fascioliasis, and it can be used as a diagnostic test to either rule out or confirm the presence of antibodies in endemic areas.

Glucocorticoid receptor-mediated induction of glutamine synthetase in skeletal muscle cells in vitro

NASA Technical Reports Server (NTRS)

Max, Stephen R.; Thomas, John W.; Banner, Carl; Vitkovic, Ljubisa; Konagaya, Masaaki

1987-01-01

The regulation by glucocorticoids of glutamine synthetase in L6 muscle cells in culture is studied. Glutamine synthetase activity was strikingly enhanced by dexamethasone. The dexamethasone-mediated induction of glutamine synthetase activity was blocked by RU38486, a glucocorticoid antagonist, indicating the involvement of intracellular glucocorticoid receptors in the induction process. RU38486 alone was without effect. Northern blot analysis revealed that dexamethasone-mediated enhancement of glutamine synthetase activity involves increased levels of glutamine synthetase mRNA. Glucocorticoids regulate the expression of glutamine synthetase mRNA in cultured muscle cells via interaction with intracellular receptors. Such regulation may be relevant to control of glutamine production by muscle.

Influence of season on daytime behavioral activities of donkeys in the Northern Guinea Savanna zone of Nigeria

PubMed Central

ZAKARI, Friday Ocheja; AYO, Joseph Olusegun; REKWOT, Peter Ibrahim; KAWU, Mohammed Umar

2016-01-01

ABSTRACT The present experiment was performed with the aim of investigating the effect of season on behavioral activities of donkeys during the rainy and harmattan seasons in the Northern Guinea zone of Nigeria. Sixteen apparently healthy donkeys were used as subjects and divided into four groups based on age. During each season, behavioral activities of each donkey were evaluated for three weeks using the focal animal sampling technique. The dry-bulb temperature (DBT), relative humidity (RH), and temperature-humidity index (THI) were obtained three times each day during the experimental period using standard procedures. In the rainy season, the mean DBT (31.65 ± 0.49°C), RH (73.63 ± 1.09%), and THI (84.39 ± 0.71) were significantly (P<0.0001) higher than the corresponding values of 24.00 ± 0.44°C, 36.80 ± 0.92%, and 64.80 ± 0.62 in the harmattan season. During the rainy season, the donkeys spent 60.00 ± 0.77%, 25.40 ± 0.69%, and 2.94 ± 0.21% on grazing, resting, and grooming, respectively. During the harmattan season, the donkeys spent the most time on grazing (76.76 ± 0.43%), less time on resting (11.97 ± 0.38%), and the least time on grooming (0.89 ± 0.05%). In conclusion, season and seasonal variations affect the daytime behavioral activities of donkeys in the zone, and this should be considered in husbandry practices for donkeys. PMID:26858575

Late Pliocene-Quaternary evolution of outermost hinterland basins of the Northern Apennines (Italy), and their relevance to active tectonics

NASA Astrophysics Data System (ADS)

Sani, Federico; Bonini, Marco; Piccardi, Luigi; Vannucci, Gianfranco; Delle Donne, Dario; Benvenuti, Marco; Moratti, Giovanna; Corti, Giacomo; Montanari, Domenico; Sedda, Lorenzo; Tanini, Chiara

2009-10-01

We examine the tectonic evolution and structural characteristics of the Quaternary intermontane Mugello, Casentino, and Sansepolcro basins, in the Northern Apennines fold-and-thrust belt. These basins have been classically interpreted to have developed under an extensional regime, and to mark the extension-compression transition. The results of our study have instead allowed framing the formation of these basins into a compressive setting tied to the activity of backthrust faults at their northeastern margin. Syndepositional activity of these structures is manifested by consistent architecture of sediments and outcrop-scale deformation. After this phase, the Mugello and Sansepolcro basins experienced a phase of normal faulting extending from the middle Pleistocene until Present. Basin evolution can be thus basically framed into a two-phase history, with extensional tectonics superposed onto compressional structures. Analysis of morphologic features has revealed the occurrence of fresh fault scarps and interaction of faulting with drainage systems, which have been interpreted as evidence for potential ongoing activity of normal faults. Extensional tectonics is also manifested by recent seismicity, and likely caused the strong historical earthquakes affecting the Mugello and Sansepolcro basins. Qualitative comparison of surface information with depth-converted seismic data suggests the basins to represent discrete subsiding areas within the seismic belt extending along the axial zone of the Apennines. The inferred chronology of deformation and the timing of activity of normal faults have an obvious impact on the elaboration of seismic hazard models.

Confirmation of the Northern Delta Aquariids (NDA, IAU #26) and the Northern June Aquilids (NZC, IAU #164)

NASA Astrophysics Data System (ADS)

Holman, David; Jenniskens, Peter

2012-10-01

This paper resolves confusion surrounding the Northern delta-Aquariids (NDA, IAU #26). Low-light level video observations with the Cameras for All-sky Meteor Surveillance project in California show distinct showers in the months of July and August. The July shower is identified as the Northern June Aquilids (NZC, IAU #164), while the August shower matches most closely prior data on the Northern delta-Aquariids. This paper validates the existence of both showers, which can now be moved to the list of established showers. The August beta-Piscids (BPI, #342) is not a separate stream, but identical to the Northern delta-Aquariids, and should be discarded from the IAU Working List. We detected the Northern June Aquilids beginning on June 14, through its peak on July 11, and to the shower's end on August 2. The meteors move in a short-period sun grazing comet orbit. Our mean orbital elements are: q = 0.124 ± 0.002 AU, 1/a = 0.512 ± 0.014 AU^{-1}, i = 37°63 ± 0°35, omega = 324°90 ± 0°27, and Omega = 107°93 ± 0°91 (N = 131). This orbit is similar to that of sungrazer comet C/2009 U10.

Database of potential sources for earthquakes larger than magnitude 6 in Northern California

USGS Publications Warehouse

,

1996-01-01

The Northern California Earthquake Potential (NCEP) working group, composed of many contributors and reviewers in industry, academia and government, has pooled its collective expertise and knowledge of regional tectonics to identify potential sources of large earthquakes in northern California. We have created a map and database of active faults, both surficial and buried, that forms the basis for the northern California portion of the national map of probabilistic seismic hazard. The database contains 62 potential sources, including fault segments and areally distributed zones. The working group has integrated constraints from broadly based plate tectonic and VLBI models with local geologic slip rates, geodetic strain rate, and microseismicity. Our earthquake source database derives from a scientific consensus that accounts for conflict in the diverse data. Our preliminary product, as described in this report brings to light many gaps in the data, including a need for better information on the proportion of deformation in fault systems that is aseismic.

Quantitative morphometric analysis for the tectonic characterisation of northern Tunisia.

NASA Astrophysics Data System (ADS)

Camafort, Miquel; Pérez-Peña, José Vicente; Booth-Rea, Guillermo; Ranero, César R.; Gràcia, Eulàlia; Azañón, José Miguel; Melki, Fetheddine; Ouadday, Mohamed

2016-04-01

Northern Tunisia is characterized by low deformation rates and low to moderate seismicity. Although instrumental seismicity reaches maximum magnitudes of Mw 5.5, some historical earthquakes have occurred with catastrophic consequences in this region. Aiming to improve our knowledge of active tectonics in Tunisia, we carried out both a quantitative morphometric analysis and field study in the north-western region. We applied different morphometric tools, like river profiles, knickpoint analysis, hypsometric curves and integrals and drainage pattern anomalies in order to differentiate between zones with high or low recent tectonic activity. This analysis helps identifying uplift and subsidence zones, which we relate to fault activity. Several active faults in a sparse distribution were identified. A selected sector was studied with a field campaign to test the results obtained with the quantitative analysis. During the fieldwork we identified geological evidence of recent activity and a considerable seismogenic potential along El Alia-Teboursouk (ETF) and Dkhila (DF) faults. The ETF fault could be responsible of one of the most devastating historical earthquakes in northern Tunisia that destroyed Utique in 412 A.D. Geological evidence include fluvial terraces folded by faults, striated and cracked pebbles, clastic dikes, sand volcanoes, coseismic cracks, etc. Although not reflected in the instrumental seismicity, our results support an important seismic hazard, evidenced by the several active tectonic structures identified and the two seismogenic faults described. After obtaining the current active tectonic framework of Tunisia we discuss our results within the western Mediterranean trying to contribute to the understanding of the western Mediterranean tectonic context. With our results, we suggest that the main reason explaining the sparse and scarce seismicity of the area in contrast with the adjacent parts of the Nubia-Eurasia boundary is due to its extended

AmeriFlux CA-Man Manitoba - Northern Old Black Spruce (former BOREAS Northern Study Area)

DOE Data Explorer

Amiro, Brian [University of Manitoba

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site CA-Man Manitoba - Northern Old Black Spruce (former BOREAS Northern Study Area). Site Description - 55.880° N, 98.481° W, elevation of 259 m, Boreal coniferous: Black spruce; occasional larch present in poorly-drained areas. Groundcover is moss (feathermosses and Sphagnum), Labrador Tea, Vaccinium, and willows are a main component of the understory. It was established in 1993 as a BOREAS site.

Tissue-nonspecific alkaline phosphatase is activated in enterocytes by oxidative stress via changes in glycosylation.

PubMed

López-Posadas, Rocío; González, Raquel; Ballester, Isabel; Martínez-Moya, Patricia; Romero-Calvo, Isabel; Suárez, María Dolores; Zarzuelo, Antonio; Martínez-Augustin, Olga; Sánchez de Medina, Fermín

2011-02-01

Intestinal inflammation produces an induction of alkaline phosphatase (AP) activity that is attributable in part to augmented expression, accompanied by a change in isoform, in epithelial cells. This study focuses on induction of AP in intestinal epithelial cells in vitro. Treatment with the oxidants H2O2, monochloramine, or tButOOH increases AP activity in vitro in Caco-2, HT29, and IEC18 cells. We selected IEC18 cells for further testing. Basal AP activity in IEC18 cells is of the tissue-nonspecific (bone-liver-kidney) type, as indicated by Northern and Western blot analysis. Oxidative stress augments AP activity and the sensitivity of the enzyme to levamisole, homoarginine, and heat in IEC18 cells. Increased immunoreactivity to tissue-nonspecific AP antibodies suggests an isoform shift from liver to either kidney or bone type. This effect occurs without changes at the mRNA level and is sensitive to tunicamycin, an inhibitor of N-glycosylation, and neuraminidase digestion. Saponin and deoxycholate produce similar effects to oxidants. Butyrate but not proinflammatory cytokines or LPS can induce a similar effect but without toxicity. The AP increase is not prevented by modulators of the MAPK, NF-κB, calcium, and cyclic adenosine monophosphate (cAMP) pathways, and is actually enhanced by actinomycin D via higher cell stress. Oxidative stress causes a distinct increase in enterocyte AP activity together with cell toxicity via changes in the glycosylation of the enzyme that correspond to a shift in isotype within the tissue-nonspecific paradigm. We speculate that this may have physiological implication for gut defense.

Spring Hydrology Determines Summer Net Carbon Uptake in Northern Ecosystems

NASA Technical Reports Server (NTRS)

Yi, Yonghong; Kimball, John; Reichle, Rolf H.

2014-01-01

Increased photosynthetic activity and enhanced seasonal CO2 exchange of northern ecosystems have been observed from a variety of sources including satellite vegetation indices (such as the Normalized Difference Vegetation Index; NDVI) and atmospheric CO2 measurements. Most of these changes have been attributed to strong warming trends in the northern high latitudes (greater than or equal to 50N). Here we analyze the interannual variation of summer net carbon uptake derived from atmospheric CO2 measurements and satellite NDVI in relation to surface meteorology from regional observational records. We find that increases in spring precipitation and snow pack promote summer net carbon uptake of northern ecosystems independent of air temperature effects. However, satellite NDVI measurements still show an overall benefit of summer photosynthetic activity from regional warming and limited impact of spring precipitation. This discrepancy is attributed to a similar response of photosynthesis and respiration to warming and thus reduced sensitivity of net ecosystem carbon uptake to temperature. Further analysis of boreal tower eddy covariance CO2 flux measurements indicates that summer net carbon uptake is positively correlated with early growing-season surface soil moisture, which is also strongly affected by spring precipitation and snow pack based on analysis of satellite soil moisture retrievals. This is attributed to strong regulation of spring hydrology on soil respiration in relatively wet boreal and arctic ecosystems. These results document the important role of spring hydrology in determining summer net carbon uptake and contrast with prevailing assumptions of dominant cold temperature limitations to high-latitude ecosystems. Our results indicate potentially stronger coupling of boreal/arctic water and carbon cycles with continued regional warming trends.

Neutral sphingomyelinase-3 mediates TNF-stimulated oxidant activity in skeletal muscle.

PubMed

Moylan, Jennifer S; Smith, Jeffrey D; Wolf Horrell, Erin M; McLean, Julie B; Deevska, Gergana M; Bonnell, Mark R; Nikolova-Karakashian, Mariana N; Reid, Michael B

2014-01-01

Sphingolipid and oxidant signaling affect glucose uptake, atrophy, and force production of skeletal muscle similarly and both are stimulated by tumor necrosis factor (TNF), suggesting a connection between systems. Sphingolipid signaling is initiated by neutral sphingomyelinase (nSMase), a family of agonist-activated effector enzymes. Northern blot analyses suggest that nSMase3 may be a striated muscle-specific nSMase. The present study tested the hypothesis that nSMase3 protein is expressed in skeletal muscle and functions to regulate TNF-stimulated oxidant production. We demonstrate constitutive nSMase activity in skeletal muscles of healthy mice and humans and in differentiated C2C12 myotubes. nSMase3 (Smpd4 gene) mRNA is highly expressed in muscle. An nSMase3 protein doublet (88 and 85 kD) is derived from alternative mRNA splicing of exon 11. The proteins partition differently. The full-length 88 kD isoform (nSMase3a) fractionates with membrane proteins that are resistant to detergent extraction; the 85 kD isoform lacking exon 11 (nSMase3b) is more readily extracted and fractionates with detergent soluble membrane proteins; neither variant is detected in the cytosol. By immunofluorescence microscopy, nSMase3 resides in both internal and sarcolemmal membranes. Finally, myotube nSMase activity and cytosolic oxidant activity are stimulated by TNF. Both if these responses are inhibited by nSMase3 knockdown. These findings identify nSMase3 as an intermediate that links TNF receptor activation, sphingolipid signaling, and skeletal muscle oxidant production. Our data show that nSMase3 acts as a signaling nSMase in skeletal muscle that is essential for TNF-stimulated oxidant activity.

7 CFR 457.143 - Northern potato crop insurance-quality endorsement.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 6 2013-01-01 2013-01-01 false Northern potato crop insurance-quality endorsement... Northern potato crop insurance—quality endorsement. The Northern Potato Crop Insurance Quality Endorsement...) Both FCIC and reinsured policies: Northern Potato Crop Insurance Quality Endorsement 1. Definitions...

7 CFR 457.143 - Northern potato crop insurance-quality endorsement.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 6 2014-01-01 2014-01-01 false Northern potato crop insurance-quality endorsement... Northern potato crop insurance—quality endorsement. The Northern Potato Crop Insurance Quality Endorsement...) Both FCIC and reinsured policies: Northern Potato Crop Insurance Quality Endorsement 1. Definitions...

7 CFR 457.143 - Northern potato crop insurance-quality endorsement.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 6 2012-01-01 2012-01-01 false Northern potato crop insurance-quality endorsement... Northern potato crop insurance—quality endorsement. The Northern Potato Crop Insurance Quality Endorsement...) Both FCIC and reinsured policies: Northern Potato Crop Insurance Quality Endorsement 1. Definitions...

7 CFR 457.143 - Northern potato crop insurance-quality endorsement.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 6 2011-01-01 2011-01-01 false Northern potato crop insurance-quality endorsement... Northern potato crop insurance—quality endorsement. The Northern Potato Crop Insurance Quality Endorsement...) Both FCIC and reinsured policies: Northern Potato Crop Insurance Quality Endorsement 1. Definitions...

Executive Summary: Forests of the Northern United States

Treesearch

Stephen R. Shifley; Francisco X. Aguilar; Nianfu Song; Susan I. Stewart; David J. Nowak; Dale D. Gormanson; W. Keith Moser; Sherri Wormstead; Eric J. Greenfield

2012-01-01

This executive summary provides an overview of the 200-page report, Forests of the Northern United States, which covers in detail current forest conditions, recent trends, issues, threats and opportunities in the forests in the 20 Northern States. It provides a context for subsequent Northern Forest Futures Project analyses that will forecast alternative future...

Uridine 5′-Monophosphate Synthase Is Transcriptionally Regulated by Pyrimidine Levels in Nicotiana plumbaginifolia1

PubMed Central

Santoso, Djoko; Thornburg, Robert

1998-01-01

To understand the regulation and expression of pyrimidine biosynthesis in plants, we have examined the effect of the metabolic inhibitor 5-fluoroorotic acid (FOA) on uridine-5′-monophosphate synthase (UMPSase) expression in cell cultures of Nicotiana plumbaginifolia. UMPSase is the rate-limiting step of pyrimidine biosynthesis in plants. Addition of FOA causes an up-regulation of UMPSase enzyme activity in cell cultures after a lag phase of several days. Western-blot analysis demonstrated that the up-regulation in enzyme activity was caused by increased expression of the UMPSase protein. Northern-blot analysis demonstrated a higher level of UMPSase mRNA in the FOA-induced tissues than in control tissues. Run-on transcriptional assays showed that the UMPSase gene was transcriptionally activated after FOA treatment. The mechanism of toxicity of FOA is through thymine starvation. We found that addition of thymine abrogated the FOA-mediated up-regulation of UMPSase. In addition, methotrexate and aminopterin, which affect thymine levels by inhibiting dihydrofolate reductase, also up-regulate UMPSase in N. plumbaginifolia cells. PMID:9490773

Uridine 5'-Monophosphate Synthase Is Transcriptionally Regulated by Pyrimidine Levels in Nicotiana plumbaginifolia

PubMed

Santoso; Thornburg

1998-02-01

To understand the regulation and expression of pyrimidine biosynthesis in plants, we have examined the effect of the metabolic inhibitor 5-fluoroorotic acid (FOA) on uridine-5'-monophosphate synthase (UMPSase) expression in cell cultures of Nicotiana plumbaginifolia. UMPSase is the rate-limiting step of pyrimidine biosynthesis in plants. Addition of FOA causes an up-regulation of UMPSase enzyme activity in cell cultures after a lag phase of several days. Western-blot analysis demonstrated that the up-regulation in enzyme activity was caused by increased expression of the UMPSase protein. Northern-blot analysis demonstrated a higher level of UMPSase mRNA in the FOA-induced tissues than in control tissues. Run-on transcriptional assays showed that the UMPSase gene was transcriptionally activated after FOA treatment. The mechanism of toxicity of FOA is through thymine starvation. We found that addition of thymine abrogated the FOA-mediated up-regulation of UMPSase. In addition, methotrexate and aminopterin, which affect thymine levels by inhibiting dihydrofolate reductase, also up-regulate UMPSase in N. plumbaginifolia cells.

Phototaxis of larval and juvenile northern pike

USGS Publications Warehouse

Zigler, S.J.; Dewey, M.R.

1995-01-01

Age- Phi northern pike Esox lucius prefer vegetated habitats that are difficult to sample with standard towed gears. Light traps can be effective for sampling larval fishes in dense vegetation, given positive phototaxis of fish. We evaluated the phototactic response of young northern pike by comparing the catches of larvae and juveniles obtained with plexiglass traps deployed with a chemical light stick versus traps deployed without a light source (controls) in a laboratory raceway and in a vegetated pond. In the laboratory tests, catches of protolarvae and mesolarvae in lighted traps were 11-35 times greater than catches in control traps. The catches of juvenile northern pike in field and laboratory experiments were 3-15 times greater in lighted traps than in control traps, even though the maximum body width of the larger juveniles was similar to the width of the entrance slots of the traps (5 mm). Larval and juvenile northern pike were photopositive; thus, light traps should effectively sample age-0 northern pike for at least 6 weeks after hatching.

[Lifestyles and Styles of Parental Care Related to Childhood Obesity: compare Spain with Northern European Countries: ENERGY-Project].

PubMed

Miqueleiz, Estrella; Te Velde, Saskia; Regidor, Enrique; Van Lippevelde, Wendy; Vik, Froydis N; Fernández-Alvira, Juan Miguel; Vicente-Rodríguez, Germán; Kunst, Anton

2015-10-01

The prevalence of childhood obesity is higher in Spain than in Northern European countries for reasons that are still unknown. The objective was to determine whether variables related to lifestyle habits and styles of parental care related to obesity in children differ between the countries of Northern Europe and Spain. Data were obtained from the ENERGY international project using questionnaires. We analyzed data from Spain, the Netherlands, Belgium and Norway including 1937 boys and 2061 girls aged 10-12 years old. We have studied the behavior of parents related to dietary variables, variables related to physical activity and ways of care. We calculated the mean and the proportions of all the variables and then calculated the association between different variables with the country of origin using the beta coefficient and the odds ratio (OR) as a measure of association. Compared with parents in Northern Europe, Spanish parents consume significantly less days a week sugary drinks (Mean: 1.37 vs 2.16) but they consume more fruit juices (Mean: 2,61 vs 2,35). Spanish parents are more active going to their work, they are less sedentary but perform physical activity in their leisure time fewer days per week (Mean days per week they do physical activity in their leisure time: 1.88 vs 2.21). In addition, they are less negotiators with their children (Mean (0-4): 1.26 vs 1.68) and prevent less negative role models (Mean (0-4): 0.90 vs 1.29). However, they pay more attention (Mean (0-4): 3.42 vs 3.04) and encourage more healthy habits (Mean (0-4): 2.38 vs 2.06). The variables related to lifestyle habits and styles of care related to childhood obesity differ between Spanish parents and those of the countries of Northern Europe but these differences are not statistically significant. Therefore, differences in lifestyles and parenting practices might not explain the significant differences in childhood obesity between the Northern countries and Spain.

Northern Nutrition.

ERIC Educational Resources Information Center

Northwest Territories Dept. of Education, Yellowknife.

This guide contains nutrition information and nutrition education strategies aimed at residents of the Canadian Arctic. Section I: (1) defines nutrition terms; (2) describes the sources and functions of essential nutrients; (3) explains Canada's food guide and special considerations for the traditional northern Native diet and for lactose…

Observations of atmospheric methane concentrations and sources at two supersites Tiksi, northern Siberia and Pallas-Sodankylä, northern Finland (Invited)

NASA Astrophysics Data System (ADS)

Laurila, T. J.; Aurela, M.; Hatakka, J.; Aalto, T.; Lohila, A.; Asmi, E.; Kondratyev, V.; Ivakhov, V.; Reshetnikov, A.; Makshtas, A. P.; Dlugokencky, E. J.; Uttal, T.

2013-12-01

Arctic and Boreal regions are important in the global methane budget mainly because emissions are large from the extensive wetlands. Recently the potential for increased emissions from methane hydrates under sediments at the bottom of the Arctic Ocean has been recognized. Resource exploitation in the Arctic is expanding and includes gas and oil drilling. Together with climate warming, we may expect changes in methane emissions from high northern latitudes. The main tools to probe the effect of this development on atmospheric methane are atmospheric methane observations and local emission measurements by micrometeorological and chamber methods. To better understand emissions at small and large scales, so called supersites have been introduced. At these sites, both atmospheric concentrations and emissions from representative ecosystems, together with suite of other environmental information, are measured continuously. We are running two of these supersites: Pallas-Sodankylä in northern Finland and Tiksi in Siberia on the coast of the Laptev Sea. In spite of the fact that both sites are north of the Arctic Circle, environmental conditions differ very much. In northern Scandinavia, climate is relatively marine, and wetland methane emissions are active throughout the year. In continental Tiksi the active layer is 30-80 cm and methane emissions cease during the coldest months when soil temperature is close to -20°C. Air mass advection is either from continental Siberia or from the Siberian seas. Forest and tundra fires are relatively common. At Pallas, advection is from the forested boreal and industrialized areas of Europe or the Norwegian or Barents Sea. In this presentation, we show seasonal variations of atmospheric methane concentrations at World Meteorological Organization - Global Atmosphere Watch sites: Pallas-Sodankylä and Tiksi. Source areas have been analyzed by trajectories. The main sources of methane in Tiksi were wetlands and the Laptev Sea, which is

Western blot analysis of sera from dogs with suspected food allergy.

PubMed

Favrot, Claude; Linek, Monika; Fontaine, Jacques; Beco, Luc; Rostaher, Ana; Fischer, Nina; Couturier, Nicolas; Jacquenet, Sandrine; Bihain, Bernard E

2017-04-01

Food allergy is often suspected in dogs with clinical signs of atopic dermatitis. This diagnosis is confirmed with an elimination diet and a subsequent challenge with regular food. Laboratory tests for the diagnosis of food allergy in dogs are unreliable and/or technically difficult. Cyno-DIAL ® is a Western blot method that might assist with the selection of an appropriate elimination diet. To evaluate the performance of Cyno-DIAL ® for the selection of an elimination diet and diagnosis of food allergy. Thirty eight dogs with atopic dermatitis completed an elimination diet. Combining the results of the diet trials and the challenges, 14 dogs were classified as food allergic (FA), 22 as nonfood-allergic and two as ambiguous cases. Amongst all dogs and amongst dogs with a clinical diagnosis of FA, 3% and 7% (respectively) were positive to Royal Canin Anallergenic ® , Vet-Concept Kanguru ® or Vet-Concept Dog Sana ® ; 8% and 7% to Hill's d/d Duck and Rice ® ; 8% and 21% to Hill's z/d Ultra Allergen Free ® ; 53% and 64% to Eukanuba Dermatosis FP ® ; and 32% and 43% to a home-cooked diet of horse meat, potatoes and zucchini. The specificity and sensitivity of Cyno-DIAL ® for diagnosing food allergy were 73% and 71%, respectively. Although Cyno-DIAL ® was considered potentially useful for identifying appropriate foods for elimination diet trials, it cannot be recommended for the diagnosis of food allergy. The Cyno-DIAL ® test performed better than some previously evaluated ELISA-based tests. © 2017 ESVD and ACVD.

Sowing pregerminated northern red oak acorns

Treesearch

Richard M. Godman; Gilbert A. Mattson

1992-01-01

Northern red oak is extremely difficult to regenerate, although it has produced good acorn crops nearly half of the last 32 years in northern Wisconsin. Field trials have shown that for successful seeding, you must protect acorns from predation by wildlife and sow them when temperatures are most favorable for germination.

Application of FTA sample collection and DNA purification system on the determination of CTG trinucleotide repeat size by PCR-based Southern blotting.

PubMed

Hsiao, K M; Lin, H M; Pan, H; Li, T C; Chen, S S; Jou, S B; Chiu, Y L; Wu, M F; Lin, C C; Li, S Y

1999-01-01

Myotonic dystrophy (DM) is caused by a CTG trinucleotide expansion mutation at exon 15 of the myotonic dystrophy protein kinase gene. The clinical severity of this disease correlates with the length of the CTG trinucleotide repeats. Determination of the CTG repeat length has been primarily relied on by Southern blot analysis of restriction enzyme-digested genomic DNA. The development of PCR-based Southern blotting methodology provides a much more sensitive and simpler protocol for DM diagnosis. However, the quality of the template and the high (G+C) ratio of the amplified region hamper the use of PCR on the diagnosis of DM. A modified PCR protocol to amplify different lengths of CTG repeat region using various concentrations of 7deaza-dGTP has been reported (1). Here we describe a procedure including sample collection, DNA purification, and PCR analysis of CTG repeat length without using 7-deaza-dGTP. This protocol is very sensitive and convenient because only a small number of nucleate cells are needed for detection of CTG expansion. Therefore, it could be very useful in clinical and prenatal diagnosis as well as in prevalence study of DM.

WIND CHARACTERISTICS OF MESQUITE STREETS IN THE NORTHERN CHIHUAHUAN DESERT, NEW MEXICO, USA

EPA Science Inventory

The most active areas for sand movement in the mesquite-dominated ecosystems in the northern part of the Chihuahuan Desert are elongated bare soil patches referred to as "streets." Wind properties were measured at two flat mesquite sites having highly similar sandy textures but...

Therapeutic effect of Northern Labrador tea extracts for acute myeloid leukemia.

PubMed

McGill, Colin M; Tomco, Patrick L; Ondrasik, Regina M; Belknap, Kaitlyn C; Dwyer, Gaelen K; Quinlan, Daniel J; Kircher, Thomas A; Andam, Cheryl P; Brown, Timothy J; Claxton, David F; Barth, Brian M

2018-04-27

Acute myeloid leukemia (AML) is an aggressive hematological malignancy that is one of the more common pediatric malignancies in addition to occurring with high incidence in the aging population. Unfortunately, these patient groups are quite sensitive to toxicity from chemotherapy. Northern Labrador tea, or Rhododendron tomentosum Harmaja (a.k.a. Ledum palustre subsp. decumbens) or "tundra tea," is a noteworthy medicinal plant used by indigenous peoples in Alaska, Canada, and Greenland to treat a diversity of ailments. However, laboratory investigations of Northern Labrador tea, and other Labrador tea family members, as botanical sources for anticancer compounds have been limited. Utilizing an AML cell line in both in vitro and in vivo studies, as well as in vitro studies using primary human AML patient samples, this study demonstrated for the first time that Northern Labrador tea extracts can exert anti-AML activity and that this may be attributed to ursolic acid as a constituent component. Therefore, this medicinal herb holds the potential to serve as a source for further drug discovery efforts to isolate novel anti-AML compounds. Copyright © 2018 John Wiley & Sons, Ltd.

Investigating Environmental Tectonics in Northern Alpine Foreland of Europe

NASA Astrophysics Data System (ADS)

Cloetingh, Sierd; Ziegler, Peter; Cornu, Tristan; Ustaszewski, K.; Schmid, S.; Dezes, P.; Hinsch, R.; Decker, K.; Lopes Cardozo, G.; Granet, M.; Bertrand, G.; Behrmann, J.; Michon, L.; Pagnier, H.; van Wees, J. D.; Rozsa, S.; Heck, B.; Verdun, J.; Kahle, H. G.; Fracassi, U.; Winter, T.; Burov, E.

Until now, research on neotectonics and related seismicity has mostly focused on active plate boundaries characterized by a generally high level of earthquake activity. Current seismic hazard estimates for intraplate areas are commonly based on probabilistic analyses of historical and instrumental earthquake data. The accuracy of these hazard estimates is limited by the nature of the data (e.g., ambiguous historical sources), and by the restriction of available earthquake catalogues to time scales of only few hundred years. Both of these are geologically insignificant and unsuitable for describing tectonic processes causing earthquakes. This is especially relevant to intraplate regions, where faults show low slip rates resulting in long average recurrence times for large earthquakes (103 to 106 yrs), such as the devastating Basel earthquake of 1356, with an estimated magnitude of 6.5. The Alpine orogen and the intraplate sedimentary basins and rifts of its northern foreland are associated with a much higher level of neotectonic activity than hitherto assumed. Seismicity and stress indicator data, combined with geodetic and geomorphologic observations, demonstrate that the Northern Alpine foreland is being actively deformed [Cloetingh, 2000; Ziegler et al., 2002; Behrmann et al., 2003]. This has major implications for the assessment of their natural hazards and environmental degradation. The northwest European lithosphere has undergone a polyphase evolution, in which the interplay between upper mantle thermal perturbations [Goes et al., 2000; Ritter et al., 2001] and stress-induced intraplate deformation [Muller et al., 1992; Ziegler et al., 2002] played an important role. A number of recent findings point to an important role of lithospheric folding in thermally weakened lithosphere of the northwestern European foreland [Cloetingh et al., 1999].

Surveillance lessons from first-wave pandemic (H1N1) 2009, Northern California, USA.

PubMed

Baxter, Roger

2010-03-01

After the appearance of pandemic (H1N1) 2009 in April 2009, influenza activity was monitored within the Kaiser Permanente Northern California division by using laboratory, pharmacy, telephone calls, and utilization (services patients received) data. A combination of testing and utilization data showed a pattern of disease activity, but this pattern may have been affected by public perception of the epidemic.

Success of Underplanting Northern Red Oaks

Treesearch

Martin A. Spetich; Daniel C. Dey; Paul S. Johnson; David L. Graney

2004-01-01

We summarize results of the growth and survival of northern red oak (Quercus rubra L.) seedlings 11 years after planting in shelterwoods in the Boston Mountains of Arkansas. Shelterwood overstories were harvested 3 years after underplanting > 4,000 northern red oak seedlings. Woody vegetation that was competing with planted seedlings received two...

Northern Australia

Atmospheric Science Data Center

2013-04-16

article title:  Tropical Northern Australia   ... view. Water appears in blue shades in the right image, for example, because glitter makes the water look brighter at the aft camera's view ... MD. The MISR data were obtained from the NASA Langley Research Center Atmospheric Science Data Center in Hampton, VA. Image ...

Identification and characterization of Kaposi's sarcoma-associated herpesvirus open reading frame 11 promotor activation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Lei

2008-01-01

Open reading frame 11 (ORF11) of Kaposi's sarcoma-associated herpesvirus belongs to a herpesviral homologous protein family shared by some members of the gamma- herpesvirus subfamily. Little is known about this ORF11 homologous protein family. We have characterized an unknown open reading frame, ORF11, located adjacent and in the opposite orientation to a well-characterized viral IL-6 gene. Northern blot analysis reveals that ORF11 is expressed during the KSHV lytic cycle with delayed-early transcription kinetics. We have determined the 5{prime} and 3{prime} untranslated region of the unspliced ORF11 transcript and identified both the transcription start site and the transcription termination site. Coremore » promoter region, representing ORF11 promoter activity, was mapped to a 159nt fragment 5{prime} most proximal to the transcription start site. A functional TATA box was identified in the core promoter region. Interestingly, we found that ORF11 transcriptional activation is not responsive to Rta, the KSHV lytic switch protein. We also discovered that part of the ORF11 promoter region, the 209nt fragment upstream of the transcription start site, was repressed by phorbol esters. Our data help to understand transcription regulation of ORF11 and to elucidate roles of ORF11 in KSHV pathogenesis and life cycle.« less

Circulation of influenza B lineages in northern Viet Nam, 2007–2014

PubMed Central

Le, Thi Thanh; Pham, Thu Hang; Pham, Thi Hien; Nguyen, Le Khanh Hang; Hoang, Vu Mai Phuong; Tran, Thu Huong; Nguyen, Vu Son; Ngo, Huong Giang

2015-01-01

Introduction Influenza B viruses circulate throughout Viet Nam, and their activities vary by region. There have been two antigenically distinct lineages of influenza B viruses co-circulating in the past 20 years; however, only one lineage is selected as a component of contemporary trivalent seasonal influenza vaccines. To improve the understanding of circulating influenza B lineages and influenza vaccine mismatches, we report the virus lineages circulating in northern Viet Nam over an eight-year period (2007–2014). Methods Lineages of 331 influenza B viruses were characterized by haemagglutination inhibition assay against standard reference ferret (Yamagata) and sheep (Victoria) antisera. Sequence analysis of the haemagglutinin gene was performed in 64 selected influenza B isolates. Results The proportion of influenza B lineages changed by year. The Yamagata lineage predominated in 2007, 2008 and 2012; the Victoria lineage predominated in 2009–2014 except 2012. The two lineages showed continuous evolution over time. The Northern Hemisphere’s influenza vaccine components were mismatched with the predominant circulating viruses in 2007, 2009 and 2014. Discussion The seasonality of influenza B activity is more variable in tropical and subtropical regions than in temperate zones. Our data showed a common co-circulation of both influenza B lineages in northern Viet Nam, and it was difficult to predict which one was the predominant lineage. Quadrivalent influenza vaccines containing both lineages may improve the effectiveness of influenza vaccine programmes in the future. PMID:26798557

Dynamics of photosynthetic photon flux density (PPFD) and estimates in coastal northern California

USDA-ARS?s Scientific Manuscript database

The seasonal trends and diurnal patterns of Photosynthetically Active Radiation (PAR) were investigated in the San Francisco Bay Area of Northern California from March through August in 2007 and 2008. During these periods, the daily values of PAR flux density (PFD), energy loading with PAR (PARE), a...

Demography of Northern Spotted Owls in southwestern Oregon

USGS Publications Warehouse

Zabel, Cynthia J.; Salmons, Susan E.; Forsman, Eric D.; DeStefano, Stephen; Raphael, Martin G.; Gutierrez, R.J.

1996-01-01

Northern Spotted Owls (Strix occidentalis caurina) are associated with lower elevation, commercially valuable, late-successional coniferous forests in the Pacific Northwest. Meta-analyses of demographic parameters indicate that Northern Spotted Owl populations are declining throughout their range (Anderson and Burnham 1992, Burnham et al. this volume). Recent research has attempted to determine whether management activities have affected the viability of Spotted Owl populations, and results have led to development of conservation plans for the species (Dawson et al. 1987, Thomas et al. 1990, Murphy and Noon 1992, USDI 1992, Thomas et al. 1993b).In the Recovery Plan for the Northern Spotted Owl (USDI 1992b) threats to the species were identified as small population sizes, declining populations, limited amounts of habitat, continued loss and fragmentation of habitat, geographically isolated populations, and predation and competition from other avian species. Weather and fire are natural processes that also may affect reproductive success of Spotted Owls. Weather may be a factor in the high annual variability in fecundity of Spotted Owls, as has been suggested for other predatory bird species (Newton, 1979, 1986). However, these factors have not been addressed in previous studies of Spotted Owls.Our objectives were to estimate survival, fecundity, and annual rates of population change (l) for resident, territorial female Spotted Owls at two study areas in the coastal mountains of southwestern Oregon. We tested if the amount of rainfall was correlated with reproduction of Spotted Owls. While surveying for Spotted Owls, we documented the increased presence of Barred Owls (Strix varia), a potential competitor of Spotted Owls.

Assessing the effect of sea-level change and human activities on a major delta on the Pacific coast of northern South America: The Patía River

NASA Astrophysics Data System (ADS)

Restrepo A, Juan D.

2012-05-01

This paper presents the main physical and human-induced stresses that have shaped the recent evolution of the Patía River delta, the largest and best-developed delta on the western margin of South America. During the Holocene, the Patía Delta moved southward and the northern part became an estuarine system characterized by large extensions of mangrove ecosystems. However, a major human-induced water diversion, starting in 1972, diverted the Patía flow to the Sanguianga River, and shifted the active delta plain back to its former Holocene location. This discharge diversion has led to sediment starvation of the southern delta lobe and changed the northern estuarine system into an active delta plain. In addition, coastal areas of the Patía delta subsided as a result of a devastating tsunami in 1979. Morphological changes along the delta coast are evidenced by: (1) coastal retreat along the whole delta front during the period 1986-2001; (2) coastal retreat along the abandoned delta lobe for the period 2001-2008; 56% of the southern delta shoreline is retreating and only 4% of the coast shows signs of accretion; (3) progradation of the northern delta region during the period 2001-2008; the discharge diversion of the Patía River to the Sanquianga has apparently balanced the observed trends in coastal erosion and sea-level rise (5.1 mm yr- 1 for the period 1984-2006, after the 1979 tsunami); (4) formation of transgressive barrier islands with exposed peat soils in the surf zone; and (5) abandonment of former active distributaries in the southern delta plain with associated inlet closure. In the northern delta lobe, major geomorphic changes include: (1) distributary channel accretion by morphological processes such as sedimentation (also in crevasses), overbank flow, increasing width of levees, inter-distributary channel fill, and colonization of pioneer mangrove; (2) freshening conditions in the Sanguianga distributary channel, a hydrologic change that has shifted

An overview of Fukushima radionuclides measured in the northern hemisphere.

PubMed

Thakur, P; Ballard, S; Nelson, R

2013-08-01

The Great East Japan Earthquake and tsunami on March 11, 2011 resulted in the tragic accident at the Fukushima Nuclear Power Plant (NPP) and subsequently uncontrolled release of radioactive contaminants into the atmosphere. This review article attempts to compile and interpret data collected by various national and international monitoring networks in response to the Fukushima releases across the northern hemisphere. The majority of the releases occurred during the period March 12-22 with a maximum release phase from March 14-17, 2011. The radioactivity released was dominated by volatile fission products including isotopes of the noble gases (xenon and krypton), iodine, cesium, and tellurium. The radioactive gases and particles released in the accident were dispersed over the middle latitudes of the entire northern hemisphere and for the first time also measured in the southern Hemisphere. Isotopes of iodine and cesium were detected in air, water, milk and food samples collected across the entire northern hemisphere. Elevated levels of fission products were detected from March to May 2011 at many locations over the northern hemisphere. This article focuses on the most prevalent cesium and iodine isotopes, but other secondary isotopes are also discussed. Spatial and temporal patterns and differences are contrasted. The activity ratios of (131)I/(137)Cs and (134)Cs/(137)Cs measured at several locations are evaluated to gain an insight into the fuel burn-up, the inventory of radionuclides in the reactor and the isotopic signature of the accident. It is important to note that all of the radiation levels detected outside of Japan have been very low and are well below any level of public and environmental hazard. Published by Elsevier B.V.

Holocene climate and climate variability of the northern Gulf of Mexico and adjacent northern Gulf Coast: A review

USGS Publications Warehouse

Poore, Richard Z.

2008-01-01

Marine records from the northern Gulf of Mexico indicate that significant multidecadal- and century-scale variability was common during the Holocene. Mean annual sea-surface temperature (SST) during the last 1,400 years may have varied by 3°C, and excursions to cold SST coincide with reductions in solar output. Broad trends in Holocene terrestrial climate and environmental change along the eastern portion of the northern Gulf Coast are evident from existing pollen records, but the high-frequency details of climate variability are not well known. Continuous and well-dated records of climate change and climate variability in the western portion of the northern Gulf Coast are essentially lacking.Information on Holocene floods, droughts, and storm frequency along the northern Gulf Coast is limited. Records of floods may be preserved in continental shelf sediments, but establishing continuity and chronologies for sedimentary sequences on the shelf presents challenges due to sediment remobilization and redeposition during storms. Studies of past storm deposits in coastal lakes and marshes show promise for constructing records of past storm frequency. A recent summary of sea-level history of the northern Gulf Coast indicates sea level was higher than modern sea level several times during the last few thousand years.

Antimicrobial activity and agricultural properties of bitter melon (Momordica charantia L.) grown in northern parts of Turkey: a case study for adaptation.

PubMed

Yaldız, Gülsüm; Sekeroglu, Nazım; Kulak, Muhittin; Demirkol, Gürkan

2015-01-01

This study was designed to determine the adaptation capability of bitter melon (Momordica charantia L.), which is widely grown in tropical and subtropical climates, in northern parts of Turkey. In this study, plant height, number of fruits, fruit length, fruit width, number of seeds and fruit weight of bitter melon grown in field conditions were determined. The antimicrobial effect of the ethanol extract of fruit and seeds against Pseudomonas aeruginosa, Escherichia coli, Staphylococcus aureus, Salmonella typhi, Aspergillus niger and Candida albicans microorganisms was tested in vitro by the disc diffusion method. In conclusion, plant height (260 cm), number of fruits (16 per  plant), number of seeds (30.2  per fruit), fruit width (3.8 cm), fruit length (10.6 cm) and fruit weight (117.28 g fruit(- 1)) were determined; fruits were found to have antimicrobial activity against A. niger; oil and seeds were found to have antimicrobial activity against A. niger and E. coli.

27 CFR 9.70 - Northern Sonoma.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Northern Sonoma. 9.70 Section 9.70 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.70 Northern Sonoma. (a) Name. The name of the...

27 CFR 9.70 - Northern Sonoma.

Code of Federal Regulations, 2012 CFR

2012-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Northern Sonoma. 9.70 Section 9.70 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.70 Northern Sonoma. (a) Name. The name of the...

27 CFR 9.70 - Northern Sonoma.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false Northern Sonoma. 9.70 Section 9.70 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.70 Northern Sonoma. (a) Name. The name of the...

27 CFR 9.70 - Northern Sonoma.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Northern Sonoma. 9.70 Section 9.70 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.70 Northern Sonoma. (a) Name. The name of the...

27 CFR 9.70 - Northern Sonoma.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false Northern Sonoma. 9.70 Section 9.70 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.70 Northern Sonoma. (a) Name. The name of the...

Monitoring for Adaptive Management in Coniferous Forests of the Northern Rockies

Treesearch

Jock S. Young; John R. Hoffland; Richard L. Hutto

2005-01-01

Monitoring can and should be much more than the effort to track population trends; it can be a proactive effort to understand the effects of human activities on bird populations. It should be an integral part of the adaptive management process. With this in mind, the Northern Region Landbird Monitoring Program has a dual focus: (1) to monitor long-term bird population...

Environmental changes in the central Po Plain (northern Italy) due to fluvial modifications and anthropogenic activities

NASA Astrophysics Data System (ADS)

Marchetti, Mauro

2002-05-01

The fluvial environment of the central Po Plain, the largest plain in Italy, is discussed in this paper. Bounded by the mountain chains of the Alps and the Apennines, this plain is a link between the Mediterranean environment and the cultural and continental influences of both western and eastern Europe. In the past decades, economic development has been responsible for many changes in the fluvial environment of the area. This paper discusses the changes in fluvial dynamics that started from Late Pleistocene and Early Holocene due to distinct climatic changes. The discussion is based on geomorphological, pedological, and archaeological evidences and radiocarbon dating. In the northern foothills, Late Pleistocene palaeochannels indicate several cases of underfit streams among the northern tributaries of the River Po. On the other hand, on the southern side of the Po Plain, no geomorphological evidence of similar discharge reduction has been found. Here, stratigraphic sections, together with archaeological remains buried under the fluvial deposits, show a reduction in the size of fluvial sediments after the 10th millennium BC. During the Holocene, fluvial sedimentation became finer, and was characterised by minor fluctuations in the rate of deposition, probably related to short and less intense climatic fluctuations. Given the high rate of population growth and the development of human activities since the Neolithic Age, human influence on fluvial dynamics, especially since the Roman Age, prevailed over other factors (i.e., climate, tectonics, vegetation, etc.). During the Holocene, the most important changes in the Po Plain were not modifications in water discharge but in sediment. From the 1st to 3rd Century AD, land grants to war veterans caused almost complete deforestation, generalised soil erosion, and maximum progradation of the River Po delta. At present, land abandonment in the mountainous region has led to reafforestation. Artificial channel control in the

Base of fresh ground water, northern Louisiana Salt-Dome Basin and vicinity, northern Louisiana and southern Arkansas

USGS Publications Warehouse

Ryals, G.N.

1980-01-01

The National Waste Terminal Storage Program is an effort by the U.S. Department of Energy to locate and develop sites for disposal or storage of commercially produced radioactive wastes. As part of this program, salt domes in the northern Louisiana salt-dome basin are being studied to determine their suitability as repositories. Part of the U.S. Geological Survey 's participation in the program has been to describe the regional geohydrology of the northern Louisiana salt-dome basin. A map based on a compilation of published data and the interpretation of electrical logs shows the altitude of the base of freshwater in aquifers in the northern Louisiana salt-dome basin. (USGS)

SAND FLUX IN THE NORTHERN CHIHUAHUAN DESERT, NEW MEXICO, USA, AND THE INFLUENCE OF MESQUITE-DOMINATED LANDSCAPES

EPA Science Inventory

This study was designed to test two hypotheses: (1) that land dominated by mesquite (Prosopis glandulosa) is the most important area for active sand movement at the Jornada Experimental Range, located in the northern part of the Chihuahuan desert, and (2) that the most active san...

U.S. Northern Command > Newsroom > Fact Sheets

Science.gov Websites

Operations Command, North U.S. Marine Forces Northern Command U.S. Fleet Forces Command Air Forces Northern U.S. Army North Joint Task Force North Joint Task Force Civil Support Joint Task Force Alaska Joint

Tourism, biodiversity and protected areas--Review from northern Fennoscandia.

PubMed

Tolvanen, Anne; Kangas, Katja

2016-03-15

Tourist numbers in northern Fennoscandia outweigh those in other northern boreal - arctic regions, which creates a specific need to evaluate the impacts of tourism. This review 1) identifies patterns and trends in the vegetation and wildlife of northern Fennoscandian terrestrial ecosystems as a consequence of tourism and recreation, 2) discusses the implications of findings in terms of the intensity, area and magnitude of impacts, changing climate and management needs under increasing tourist pressure, and 3) identifies research gaps. The reviewed studies show negative environmental and biodiversity impacts that are most pronounced near tourist resorts. The most sensitive plants, birds and mammals decline or disappear from the disturbed sites, and the species composition shifts from 'wild' species to cultural and human associated species. There is little research on the spread of alien species, but the few examples show that alien species can be promoted by tourism activities. Impacts of the use of motorized vehicles have not been widely studied either, despite the extensive track network which can cause disturbance to wildlife. The integrated impacts of tourism and climate change on the vegetation and wildlife was not addressed directly in any of the reviewed studies. In addition, little research has been done on carrying out restoration at tourist areas. Scientific research on these topics is needed to prevent, minimize or restore the most negative ecological impacts of tourism and recreation. Copyright © 2015 Elsevier Ltd. All rights reserved.

Habitat and fish assemblage associations and current status of northern leatherside chub Lepidomeda copei in western Wyoming

USGS Publications Warehouse

Schultz, Luke; Cavalli, Pete; Sexauer, Hilda; Zafft, David

2016-01-01

Human activities have extensively altered native fish assemblages and their habitats in the western United States. Conservation and restoration for long-term persistence of these fishes requires knowledge of their distributional patterns and life history requirements. Northern leatherside chub Lepidomeda copei (hereafter northern leatherside) is a cyprinid native to the Snake and Bear River Basins of Wyoming, Idaho, Nevada, and Utah, and it is believed to have declined in distribution relative to historical records. To address information gaps in the species' ecology and assess its status in the state, the objectives of this study were first to document the distribution (2010–2011) of northern leatherside in Wyoming and then to examine habitat factors related to the entire fish assemblage and to evaluate specific habitat associations of northern leatherside in the Bear River Basin, Wyoming. In the Bear River and Upper Snake River Basins, we documented the distribution of northern leatherside and compared it to the previously known distribution. Across the Bear River Basin, we used habitat measurements to assess abiotic features related to the distribution and abundance of northern leatherside. Northern leatherside was found across the Bear River Basin and was present in 2 streams each in the Upper Snake River and Green River Basins in Wyoming. Populations in Wyoming appear to represent the core of northern leatherside range, and our work provided a finer-scale delineation of the species' occurrence. Northern leatherside was collected from a variety of habitats, but multivariate analyses and occurrence modeling indicated it was associated with increased channel depth and depth variability, and positively associated with other native fishes (including mountain sucker Catostomus platyrhynchus, redside shiner Richardsonius balteatus, and speckled dace Rhinichthys osculus). These findings on the distribution and ecology of northern leatherside provide

Imaging Lithospheric-scale Structure Beneath Northern Altiplano in Southern Peru and Northern Bolivia

NASA Astrophysics Data System (ADS)

Kumar, A.; Wagner, L. S.; Beck, S. L.; Zandt, G.; Long, M. D.

2014-12-01

The northern Altiplano plateau of southern Peru and northern Bolivia is one of the highest topographic features on the Earth, flanked by Western and Eastern Cordillera along its margin. It has strongly influenced the local and far field lithospheric deformation since the early Miocene (Masek et al., 1994). Previous studies have emphasized the importance of both the crust and upper mantle in the evolution of Altiplano plateau (McQuarrie et al., 2005). Early tomographic and receiver function studies, south of 16° S, show significant variations in the crust and upper mantle properties in both perpendicular and along strike direction of the Altiplano plateau (Dorbath et. al., 1993; Myers et al., 1998; Beck and Zandt, 2002). In order to investigate the nature of subsurface lithospheric structure below the northern Altiplano, between 15-18° S, we have determined three-dimensional seismic tomography models for Vp and Vs using P and S-wave travel time data from two recently deployed local seismic networks of CAUGHT and PULSE. We also used data from 8 stations from the PERUSE network (PERU Subduction Experiment). Our preliminary tomographic models show a complex variation in the upper mantle velocity structure with depth, northwest and southeast of lake Titicaca. We see the following trend, at ~85 km depth, northwest of lake Titicaca: low Vp and Vs beneath the Western Cordillera, high Vs beneath the Altiplano and low Vp and Vs beneath the Eastern Cordillera. This low velocity anomaly, beneath Eastern Cordillera, seems to coincide with Kimsachata, a Holocene volcano in southern Peru. At depth greater than ~85 km: we find high velocity anomaly beneath the Western Cordillera and low Vs beneath the Altiplano. This high velocity anomaly, beneath Western Cordillera, coincides with the well-located Wadati-Benioff zone seismicity and perhaps represents the subducting Nazca slab. On the southeast of lake Titicaca, in northern Bolivia, we see a consistently high velocity anomaly

Shift from posttranscriptional to predominant transcriptional control of the expression of the GM-CSF gene during activation of human Jurkat cells.

PubMed

Razanajaona, D; Maroc, C; Lopez, M; Mannoni, P; Gabert, J

1992-05-01

The expression of the granulocyte-macrophage colony-stimulating factor (GM-CSF) gene is differentially regulated in various cell types. We investigated the mechanisms controlling its expression in 12-O-tetradecanoylphorbol-13-acetate plus phytohemagglutinin-stimulated Jurkat cells, a human T-cell line. In unstimulated cells, GM-CSF mRNA was undetectable by Northern blot. Upon activation, it was detected from 3 h onward, with a progressive increase in the levels of the transcript up to 24 h of stimulation. Whereas cycloheximide treatment at the time of stimulation blocked mRNA induction, its addition at later times resulted in a marked increase in transcript levels. Run-on analysis showed that transcription of the GM-CSF gene was low to undetectable in unstimulated cells; stimulation led to transcriptional activation, which was weak at 6 h but had increased 16-fold at 24 h. In addition, the mRNA half-life decreased during activation, from 2.5 h at 6 h down to 45 min at 24 h. Cycloheximide treatment increased GM-CSF mRNA half-life (3- and 4-fold, respectively). Our results show: (a) both transcriptional and posttranscriptional signals regulate GM-CSF mRNA levels in activated Jurkat cells, (b) de novo protein synthesis is required for mRNA induction, whereas destabilizing labile proteins control the transcript stability, and (c) a shift from a posttranscriptional to a predominant transcriptional control of GM-CSF gene expression occurs during activation.

Analysis of differentially expressed genes in two immunologically distinct strains of Eimeria maxima using suppression subtractive hybridization and dot-blot hybridization

PubMed Central

2014-01-01

Background It is well known that different Eimeria maxima strains exhibit significant antigenic variation. However, the genetic basis of these phenotypes remains unclear. Methods Total RNA and mRNA were isolated from unsporulated oocysts of E. maxima strains SH and NT, which were found to have significant differences in immunogenicity in our previous research. Two subtractive cDNA libraries were constructed using suppression subtractive hybridization (SSH) and specific genes were further analyzed by dot-blot hybridization and qRT-PCR analysis. Results A total of 561 clones were selected from both cDNA libraries and the length of the inserted fragments was 0.25–1.0 kb. Dot-blot hybridization revealed a total of 86 differentially expressed clones (63 from strain SH and 23 from strain NT). Nucleotide sequencing analysis of these clones revealed ten specific contigs (six from strain SH and four from strain NT). Further analysis found that six contigs from strain SH and three from strain NT shared significant identities with previously reported proteins, and one contig was presumed to be novel. The specific differentially expressed genes were finally verified by RT-PCR and qRT-PCR analyses. Conclusions The data presented here suggest that specific genes identified between the two strains may be important molecules in the immunogenicity of E. maxima that may present potential new drug targets or vaccine candidates for coccidiosis. PMID:24894832

The structural hinge of a chain-foreland basin: Quaternary activity of the Pede-Apennine Thrust front (Northern Italy)

NASA Astrophysics Data System (ADS)

Maestrelli, Daniele; Benvenuti, Marco; Bonini, Marco; Carnicelli, Stefano; Piccardi, Luigi; Sani, Federico

2018-01-01

The Pede-Apennine margin (Northern Italy) is a major WNW-ESE-trending morpho-structural element that delimits the Po Plain to the southwest and consists of a system of southwest dipping thrusts, generally referred to as Pede-Apennine Thrust (PAT). The leading edge of the chain lies further north-east and is buried beneath the Plio-Quaternary marine and fluvial deposits of the Po Plain. Whereas the buried external thrust fronts are obvious active structures (as demonstrated by the 2012 Emilia earthquakes; e.g. Burrato et al., 2012), ongoing activity of the PAT is debated. Using a multidisciplinary approach that integrates structural, seismic, sedimentological and pedological field data, we describe the recent activity of the PAT structures in a sector of the Pede-Apennine margin between the Panaro and the Enza Rivers (Emilia-Romagna). We found that the PAT is emergent or sub-emergent and deforms Middle Pleistocene deposits. We also infer a more recent tectonic phase ( 60-80 ka) by Optically Stimulated Luminescence (OSL) dating of soil profiles that have been deformed by a recent reactivation of the PAT. Furthermore, we show evidence that the PAT and its external splay thrusts strongly influenced the drainage pattern, causing fluvial diversions and forcing paleo-rivers to develop roughly parallel to the margin. Finally, numerical Trishear modelling has been used to calculate deformation rates for the PAT along two transects. Extrapolated slip rates vary between 0.68 and 0.79 mm·yr- 1 for about the last 1.2-0.8 million years.

Adolescents' Experiences of the Right to Play and Leisure in Northern Ireland

ERIC Educational Resources Information Center

Beckett, Helen

2010-01-01

Under Article 31 of the United Nations Convention on the Rights of the Child, every child under the age of 18 has the right to engage in age-appropriate play and leisure activities. Drawing on the qualitative findings of a wider review of children's rights in Northern Ireland, this article examines the degree to which adolescents in Northern…

7 CFR 457.146 - Northern potato crop insurance-storage coverage endorsement.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 6 2014-01-01 2014-01-01 false Northern potato crop insurance-storage coverage... Northern potato crop insurance—storage coverage endorsement. The Northern Potato Crop Insurance Storage... for insurance provider) Both FCIC and reinsured policies: Northern Potato Crop Insurance Storage...

7 CFR 457.146 - Northern potato crop insurance-storage coverage endorsement.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 6 2012-01-01 2012-01-01 false Northern potato crop insurance-storage coverage... Northern potato crop insurance—storage coverage endorsement. The Northern Potato Crop Insurance Storage... for insurance provider) Both FCIC and reinsured policies: Northern Potato Crop Insurance Storage...

7 CFR 457.146 - Northern potato crop insurance-storage coverage endorsement.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 6 2011-01-01 2011-01-01 false Northern potato crop insurance-storage coverage... Northern potato crop insurance—storage coverage endorsement. The Northern Potato Crop Insurance Storage... for insurance provider) Both FCIC and reinsured policies: Northern Potato Crop Insurance Storage...

7 CFR 457.146 - Northern potato crop insurance-storage coverage endorsement.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 6 2013-01-01 2013-01-01 false Northern potato crop insurance-storage coverage... Northern potato crop insurance—storage coverage endorsement. The Northern Potato Crop Insurance Storage... for insurance provider) Both FCIC and reinsured policies: Northern Potato Crop Insurance Storage...

Predation on Northern krill (Meganyctiphanes norvegica Sars).

PubMed

Simard, Yvan; Harvey, Michel

2010-01-01

We consider predation as a function of prey concentration with a focus on how this interaction is influenced by biological-physical interactions, and wider oceanographic processes. In particular, we examine how the anti-predation behaviour of Northern krill interacts with ocean-circulation process to influence its vulnerability to predation. We describe how three-dimensional (3D) circulation interacts with in situ light levels to modulate predator-prey interactions from small to large scales, and illustrate how the stability of the predator-prey system is sometimes perturbed as a consequence. Northern krill predators include a wide range of species from the pelagic and benthic strata, as well as birds. Many exhibit adaptations in their feeding strategy to take advantage of the dynamic physical-biological processes that determine the distribution, concentration and vulnerability of Northern krill. Among them, baleen whales appear to have developed particularly efficient predation strategies. A literature search indicates that Northern krill are a major contributor to ecosystem function throughout its distributional range, and a key species with respect to the flow of energy to upper trophic levels. A list of future research needed to fill gaps in our understanding of Northern krill predator-prey interaction is provided. Copyright © 2010 Elsevier Ltd. All rights reserved.

Exercise and physical activity in asylum seekers in Northern England; using the theoretical domains framework to identify barriers and facilitators.

PubMed

Haith-Cooper, Melanie; Waskett, Catherine; Montague, Jane; Horne, Maria

2018-06-19

Many asylum seekers have complex mental health needs which can be exacerbated by the challenging circumstances in which they live and difficulties accessing health services. Regular moderate physical activity can improve mental health and would be a useful strategy to achieve this. Evidence suggests there are barriers to engaging black and minority ethnic groups in physical activity, but there is little research around asylum seekers to address the key barriers and facilitators in this group. A two stage qualitative study used semi-structured interviews underpinned by the Theoretical Domains Framework. The interviews were conducted in voluntary sector groups in four towns/ cities in Northern England. Purposive sampling recruited 36 asylum seekers from 18 different countries. Interviews were audio recorded, transcribed verbatim and subject to framework analysis. Stage two involved a nominal group technique with five key stakeholders including asylum seekers and those that work with them. They followed a four stage process to rank and reach consensus on the key barrier to undertaking physical activity/ exercise that could be addressed locally through a future intervention. A number of barriers and facilitators were identified including a lack of understanding of the term physical activity and recommended levels but knowledge of the health benefits of physical activity/ exercise and the motivation to increase levels having engaged with activities back home. Living as an asylum seeker was considered a barrier due to the stress, poverty and temporary nature of living in an unfamiliar place. The outcome of the nominal group technique was that a lack of knowledge of facilities in the local area was the prevailing barrier that could be addressed. Public health practitioners could develop interventions which capitalise on the motivation and knowledge of asylum seekers to encourage an increase in physical activity which may in turn reduce the breadth and depth of mental

Probabilistic projections of 21st century climate change over Northern Eurasia

NASA Astrophysics Data System (ADS)

Monier, E.; Sokolov, A. P.; Schlosser, C. A.; Scott, J. R.; Gao, X.

2013-12-01

We present probabilistic projections of 21st century climate change over Northern Eurasia using the Massachusetts Institute of Technology (MIT) Integrated Global System Model (IGSM), an integrated assessment model that couples an earth system model of intermediate complexity, with a two-dimensional zonal-mean atmosphere, to a human activity model. Regional climate change is obtained by two downscaling methods: a dynamical downscaling, where the IGSM is linked to a three dimensional atmospheric model; and a statistical downscaling, where a pattern scaling algorithm uses climate-change patterns from 17 climate models. This framework allows for key sources of uncertainty in future projections of regional climate change to be accounted for: emissions projections; climate system parameters (climate sensitivity, strength of aerosol forcing and ocean heat uptake rate); natural variability; and structural uncertainty. Results show that the choice of climate policy and the climate parameters are the largest drivers of uncertainty. We also nd that dierent initial conditions lead to dierences in patterns of change as large as when using different climate models. Finally, this analysis reveals the wide range of possible climate change over Northern Eurasia, emphasizing the need to consider all sources of uncertainty when modeling climate impacts over Northern Eurasia.

Probabilistic projections of 21st century climate change over Northern Eurasia

NASA Astrophysics Data System (ADS)

Monier, Erwan; Sokolov, Andrei; Schlosser, Adam; Scott, Jeffery; Gao, Xiang

2013-12-01

We present probabilistic projections of 21st century climate change over Northern Eurasia using the Massachusetts Institute of Technology (MIT) Integrated Global System Model (IGSM), an integrated assessment model that couples an Earth system model of intermediate complexity with a two-dimensional zonal-mean atmosphere to a human activity model. Regional climate change is obtained by two downscaling methods: a dynamical downscaling, where the IGSM is linked to a three-dimensional atmospheric model, and a statistical downscaling, where a pattern scaling algorithm uses climate change patterns from 17 climate models. This framework allows for four major sources of uncertainty in future projections of regional climate change to be accounted for: emissions projections, climate system parameters (climate sensitivity, strength of aerosol forcing and ocean heat uptake rate), natural variability, and structural uncertainty. The results show that the choice of climate policy and the climate parameters are the largest drivers of uncertainty. We also find that different initial conditions lead to differences in patterns of change as large as when using different climate models. Finally, this analysis reveals the wide range of possible climate change over Northern Eurasia, emphasizing the need to consider these sources of uncertainty when modeling climate impacts over Northern Eurasia.

Onset of frequent dust storms in northern China at ~AD 1100.

PubMed

He, Yuxin; Zhao, Cheng; Song, Mu; Liu, Weiguo; Chen, Fahu; Zhang, Dian; Liu, Zhonghui

2015-11-26

Dust storms in northern China strongly affect the living and health of people there and the dusts could travel a full circle of the globe in a short time. Historically, more frequent dust storms occurred during cool periods, particularly the Little Ice Age (LIA), generally attributed to the strengthened Siberian High. However, limited by chronological uncertainties in proxy records, this mechanism may not fully reveal the causes of dust storm frequency changes. Here we present a late Holocene dust record from the Qaidam Basin, where hydrological changes were previously reconstructed, and examine dust records from northern China, including the ones from historical documents. The records, being broadly consistent, indicate the onset of frequent dust storms at ~AD 1100. Further, peaked dust storm events occurred at episodes of high total solar irradiance or warm-dry conditions in source regions, superimposed on the high background of frequent dust storms within the cool LIA period. We thus suggest that besides strong wind activities, the centennial-scale dust storm events over the last 1000 years appear to be linked to the increased availability of dust source. With the anticipated global warming and deteriorating vegetation coverage, frequent occurrence of dust storms in northern China would be expected to persist.

Ultraviolet to optical spectral distributions of northern star-forming galaxies

NASA Technical Reports Server (NTRS)

Mcquade, Kerry; Calzetti, Daniela; Kinney, Anne L.

1995-01-01

We report spectral energy distribution from the UV to the optical for a sample of 31 northern star-forming galaxies. We also present measurements for emission-line fluxes, continuum levels, and equivalent widths of absorption features for each individual spectrum as well as averages for the eight galactic activity classes, including normal, starburst, Seyfert 2, blue compact dwarf, blue compact, Low-Inonization Nuclear Emission Regions (LINER), H II, and combination LINER-H II galaxies.

Hydrogen peroxide stimulates ubiquitin-conjugating activity and expression of genes for specific E2 and E3 proteins in skeletal muscle myotubes

NASA Technical Reports Server (NTRS)

Li, Yi-Ping; Chen, Yuling; Li, Andrew S.; Reid, Michael B.

2003-01-01

Reactive oxygen species (ROS) are thought to promote muscle atrophy in chronic wasting diseases, but the underlying mechanism has not been determined. Here we show that H2O2 stimulates ubiquitin conjugation to muscle proteins through transcriptional regulation of the enzymes (E2 and E3 proteins) that conjugate ubiquitin to muscle proteins. Incubation of C2C12 myotubes with 100 microM H2O2 increased the rate of 125I-labeled ubiquitin conjugation to muscle proteins in whole cell extracts. This response required at least 4-h exposure to H2O2 and persisted for at least 24 h. Preincubating myotubes with cycloheximide or actinomycin D blocked H2O2 stimulation of ubiquitin-conjugating activity, suggesting that gene transcription is required. Northern blot analyses revealed that H2O2 upregulates expression of specific E3 and E2 proteins that are thought to regulate muscle catabolism, including atrogin1/MAFbx, MuRF1, and E214k. These results suggest that ROS stimulate protein catabolism in skeletal muscle by upregulating the ubiquitin conjugation system.

Survival and growth of northern white-cedar and balsam fir seedlings in riparian management zones in northern Minnesota, USA

Treesearch

Brian J. Palik; Brooke K. Haworth; Andrew J. David; Randall K. Kolka

2015-01-01

Northern white-cedar (Thuja occidentalis) and balsam fir (Abies balsamea.) are co-occurring species in riparian forests of the western Great Lakes region. Throughout much of the region, northern white-cedar has been experiencing population declines due to herbivory by white-tailed deer (Odocoileus virginianus)....

Fire activity and hydrological dynamics in the past 5700 years reconstructed from Sphagnum peatlands along the oceanic-continental climatic gradient in northern Poland

NASA Astrophysics Data System (ADS)

Marcisz, Katarzyna; Gałka, Mariusz; Pietrala, Patryk; Miotk-Szpiganowicz, Grażyna; Obremska, Milena; Tobolski, Kazimierz; Lamentowicz, Mariusz

2017-12-01

Fire is a critical component of many ecosystems and, as predicted by various climate models, fire activity may increase significantly in the following years due to climate change. Therefore, knowledge about the past fire activity of various ecosystems is highly important for future nature conservation purposes. We present results of high-resolution investigation of fire activity and hydrological changes in northern Poland. We analyzed microscopic charcoal from three Sphagnum-dominated peatlands located on the south of Baltic, on the oceanic-continental (west-east) climatic gradient, and reconstructed the history of fire in the last 5700 years. We hypothesize that air circulation patterns are highly important for local fire activity, and that fire activity is more intensive in peatlands influenced by continental air masses. We have found out that forest fires have been occurring regularly since the past millennia and were linked to climatic conditions. We show that fire activity (related to climate and fuel availability) was significantly higher in sites dominated by continental climate (northeastern Poland) than in the site located under oceanic conditions (northwestern Poland)-microscopic charcoal influx was 13.3 times higher in the eastern study site of the gradient, compared to the western study site. Recorded fire activity patterns were different between the sites in a long timescale. Moreover, most of the recorded charcoal peaks occurred during high water tables. Rising human pressure has caused droughts and water table instability, and substantial increase in fire activity in the last 400 years.

Production of Multiple Growth Factors by a Newly Established Human Thyroid Carcinoma Cell Line

PubMed Central

Yoshida, Yataro; Ohashi, Kensaku; Sano, Emiko; Kobayashi, Hisataka; Endo, Keigo; Naruto, Masanobu; Nakamura, Toru

1992-01-01

A multiple growth factor‐producing tumor cell line (NIM‐1) was newly established from a patient with thyroid cancer and remarkable neutrophilia. NIM‐1 cells also caused severe neutrophilia in nude mice bearing tumors. NIM‐1‐conditioned medium (NIM‐1CM) contained activities that supported not only granulocyte, macrophage and eosinophil colony formation of human bone marrow cells but also the growth of colony‐stimulating factor (CSF)‐dependent cell lines, NFS60‐KX and TF‐1. Northern blot hybridization analysis revealed the constitutive expression of granulocyte‐CSF (G‐CSF), granulocyte/macrophage‐CSF (GM‐CSF) and interleukin(IL)‐6 mRNAs in NIM‐1 cells. Enzyme‐linked immunosorbent assays (ELISA) using NIM‐1CM also confirmed the production of IL‐la and a small amount of IL‐1β besides G‐CSF, GM‐CSF and IL‐6 in NIM‐1 cells. In addition, unexpected production of IL‐11 in NIM‐1 cells was detected by northern blot hybridization analysis and by bioassay using an IL‐11‐dependent cell line. Therefore, NIM‐1 cell line is shown to produce multiple cytokines including potentially megakaryopoietic growth factors such as GM‐CSF, IL‐6 and IL‐11. PMID:1372885

Characterization of a Vibrio vulnificus LysR homologue, HupR, which regulates expression of the haem uptake outer membrane protein, HupA.

PubMed

Litwin, C M; Quackenbush, J

2001-12-01

In Vibrio vulnificus, the ability to acquire iron from the host has been shown to correlate with virulence. Here, we show that the DNA upstream of hupA (haem uptake receptor) in V. vulnificus encodes a protein in the inverse orientation to hupA (named hupR). HupR shares homology with the LysR family of positive transcriptional activators. A hupA-lacZ fusion contained on a plasmid was transformed into Fur(-), Fur(+)and HupR(-)strains of V. vulnificus. The beta-galactosidase assays and Northern blot analysis showed that transcription of hupA is negatively regulated by iron and the Fur repressor in V. vulnificus. Under low-iron conditions with added haemin, the expression of hupA in the hupR mutant was significantly lower than in the wild-type. This diminished response to haem was detected by both Northern blot and hupA-lacZ fusion analysis. The haem response of hupA in the hupR mutant was restored to wild-type levels when complemented with hupR in trans. These studies suggest that HupR may act as a positive regulator of hupA transcription under low-iron conditions in the presence of haemin. Copyright 2001 Academic Press.

A diverse family of serine proteinase genes expressed in cotton boll weevil (Anthonomus grandis): implications for the design of pest-resistant transgenic cotton plants.

PubMed

Oliveira-Neto, Osmundo B; Batista, João A N; Rigden, Daniel J; Fragoso, Rodrigo R; Silva, Rodrigo O; Gomes, Eliane A; Franco, Octávio L; Dias, Simoni C; Cordeiro, Célia M T; Monnerat, Rose G; Grossi-De-Sá, Maria F

2004-09-01

Fourteen different cDNA fragments encoding serine proteinases were isolated by reverse transcription-PCR from cotton boll weevil (Anthonomus grandis) larvae. A large diversity between the sequences was observed, with a mean pairwise identity of 22% in the amino acid sequence. The cDNAs encompassed 11 trypsin-like sequences classifiable into three families and three chymotrypsin-like sequences belonging to a single family. Using a combination of 5' and 3' RACE, the full-length sequence was obtained for five of the cDNAs, named Agser2, Agser5, Agser6, Agser10 and Agser21. The encoded proteins included amino acid sequence motifs of serine proteinase active sites, conserved cysteine residues, and both zymogen activation and signal peptides. Southern blotting analysis suggested that one or two copies of these serine proteinase genes exist in the A. grandis genome. Northern blotting analysis of Agser2 and Agser5 showed that for both genes, expression is induced upon feeding and is concentrated in the gut of larvae and adult insects. Reverse northern analysis of the 14 cDNA fragments showed that only two trypsin-like and two chymotrypsin-like were expressed at detectable levels. Under the effect of the serine proteinase inhibitors soybean Kunitz trypsin inhibitor and black-eyed pea trypsin/chymotrypsin inhibitor, expression of one of the trypsin-like sequences was upregulated while expression of the two chymotrypsin-like sequences was downregulated. Copyright 2004 Elsevier Ltd.

Performance of PCR-reverse blot hybridization assay for detection of rifampicin-resistant Mycobacterium leprae.

PubMed

Wang, Hye-young; Kim, Hyunjung; Kim, Yeun; Bang, Hyeeun; Kim, Jong-Pill; Hwang, Joo Hwan; Cho, Sang-Nae; Kim, Tae Ue; Lee, Hyeyoung

2015-10-01

Drug resistance in Mycobacterium leprae is a significant problem in countries where leprosy is endemic. A sensitive, specific, and high-throughput reverse blot hybridization assay (REBA) for the detection of genotypic resistance to rifampicin (RIF) was designed and evaluated. It has been shown that resistance to RIF in M. leprae involves mutations in the rpoB gene encoding the -subunit of the RNA polymerase. The PCR-REBA simultaneously detects both 6 wild-type regions and 5 different mutations (507 AGC, 513 GTG, 516 TAT, 531 ATG, and 531 TTC) including the most prevalent mutations at positions 507 and 531. Thirty-one clinical isolates provided by Korea Institute of Hansen-s Disease were analyzed by PCR-REBA with RIF resistance of rpoB gene. As a result, missense mutations at codons 507 AGC and 531 ATG with 2-nucleotide substitutions were found in one sample, and a missense mutation at codon 516 TAT and ΔWT6 (deletion of 530-534) was found in another sample. These cases were confirmed by DNA sequence analysis. This rapid, simple, and highly sensitive assay provides a practical alternative to sequencing for genotypic evaluation of RIF resistance in M. leprae.

Identification of Yeast V-ATPase Mutants by Western Blots Analysis of Whole Cell Lysates

NASA Astrophysics Data System (ADS)

Parra-Belky, Karlett

2002-11-01

A biochemistry laboratory was designed for an undergraduate course to help students better understand the link between molecular engineering and biochemistry. Students identified unknown yeast strains with high specificity using SDS-PAGE and Western blot analysis of whole cell lysates. This problem-solving exercise is a common application of biochemistry in biotechnology research. Three different strains were used: a wild-type and two mutants for the proton pump vacuolar ATPase (V-ATPase). V-ATPases are multisubunit enzymes and the mutants used were deletion mutants; each lacked one structural gene of the complex. After three, three-hour labs, mutant strains were easily identified by the students and distinguished from wild-type cells analyzing the pattern of SDS-PAGE distribution of proteins. Identifying different subunits of one multimeric protein allowed for discussion of the structure and function of this metabolic enzyme, which captured the interest of the students. The experiment can be adapted to other multimeric protein complexes and shows improvement of the described methodology over previous reports, perhaps because the problem and its solution are representative of the type of techniques currently used in research labs.

Dengue, Japanese encephalitis and Chikungunya virus antibody prevalence among captive monkey (Macaca nemestrina) colonies of Northern Thailand.

PubMed

Nakgoi, Khajornpong; Nitatpattana, Narong; Wajjwalku, Worawidh; Pongsopawijit, Pornsawan; Kaewchot, Supakarn; Yoksan, Sutee; Siripolwat, Voravit; Souris, Marc; Gonzalez, Jean-Paul

2014-01-01

The potential of macaque Macaca nemestrina leonina in Thailand to be infected by endemic arboviruses was assessed. The prevalence of antibodies of three arboviruses actively circulating in Thailand was determined by Plaque Reduction Neutralization assay procedures using samples from captive colonies in Northern Thailand. Out of 38 macaques, 9 (24%) presented reacting antibodies against dengue virus, 5 (13%) against Japanese encephalitis virus, and 4 (10%) against Chikungunya virus. Our results indicate that the northern pig-tailed macaque in Thailand can be infected by these arboviruses, inferring therefore that their virus specific vectors have bitten them. Given that, northern pig-tailed macaque represents an abundant population, living in close range to human or in peridomestic setting, they could play a role as potential reservoir host for arboviruses circulating in Thailand. © 2013 Wiley Periodicals, Inc.

Dermatophytosis in northern Africa.

PubMed

Nweze, E I; Eke, I

2016-03-01

Infections caused by dermatophytes are a global problem and a major public health burden in the world today. In Africa, especially in the northern geographical zone, dermatophytic infections are being reported at an alarming rate. This is mostly because of some local but unique cultural practices, socioeconomic and environmental conditions, lack of reliable diagnostic personnel and facilities and ineffective treatment. Interestingly, the pathogen spectrum and the clinical manifestation are most times different from what is seen in other continents. Several epidemiological studies have been performed on the incidence and aetiology of dermatophytoses in northern Africa. However, there is currently no review article with up-to-date information on the relevant findings reported so far in this region. This information is necessary for clinicians who treat dermatophytic infections all over the world since agents of dermatophytes are no longer restricted because of the rapid mobility of humans from one part of the world to another. Moreover, the epidemiology of dermatophytoses is known to change over time, thus requiring the update of information from time to time. A review of relevant studies published on dermatophytoses in northern Africa is presented. This covers all of old Sudan, Algeria, Egypt, Libya, Tunisia and Morocco. © 2015 Blackwell Verlag GmbH.

How underserviced rural communities approach physician recruitment: changes following the opening of a socially accountable medical school in northern Ontario.

PubMed

Mian, Oxana; Hogenbirk, John C; Warry, Wayne; Strasser, Roger P

2017-01-01

The Northern Ontario School of Medicine (NOSM) opened in 2005 with a social accountability mandate to address a long history of physician shortages in northern Ontario. The objective of this qualitative study was to understand the school's effect on recruitment of family physicians into medically underserviced rural communities of northern Ontario. We conducted a multiple case study of 8 small rural communities in northern Ontario that were considered medically underserviced by the provincial ministry of health and had successfully recruited NOSM-trained physicians. We interviewed 10 people responsible for physician recruitment in these communities. Interview transcripts were analyzed by means of an inductive and iterative thematic method. All 8 communities were NOSM medical education sites with populations of 1600-16 000. Positive changes, linked to collaboration with NOSM, included achieving a full complement of physicians in 5 communities with previous chronic shortages of 30%-50% of the physician supply, substantial reduction in recruitment expenditures, decreased reliance on locums and a shift from crisis management to long-term planning in recruitment activities. The magnitude of positive changes varied across communities, with individual leadership and communities' active engagement being key factors in successful physician recruitment. Locating medical education sites in underserviced rural communities in northern Ontario and engaging these communities in training rural physicians showed great potential to improve the ability of small rural communities to recruit family physicians and alleviate physician shortages in the region.

Museum specimens reveal changes in the population structure of northern Fennoscandian domestic reindeer in the past one hundred years.

PubMed

Bjørnstad, G; Røed, K H

2010-06-01

Traditional reindeer herding of northern Fennoscandia has been based on seasonal movements independent of national borders. At the beginning of the 19th century, these yearly movements of reindeer were excessive, but during that century the borders between the Fennoscandian countries were closed. By analysing a 190-base pair fragment of the mitochondrial DNA control region in 79 museum samples, we show that the reindeer of northern Fennoscandia were one homogenous population shortly after the national borders were closed. However, anthropogenic activity has effectively ended genetic exchange within northern Fennoscandia and has made the reindeer population within this region heterogeneous. Genetic input of eastern origin is also suggested within the extant Russian reindeer of the Kola Peninsula.

Detection of Rickettsia in Rhipicephalus sanguineus Ticks and Ctenocephalides felis Fleas from Southeastern Tunisia by Reverse Line Blot Assay

PubMed Central

Khrouf, Fatma; M'Ghirbi, Youmna; Znazen, Abir; Ben Jemaa, Mounir; Hammami, Adnene

2014-01-01

Ticks (n = 663) and fleas (n = 470) collected from domestic animals from southeastern Tunisia were screened for Rickettsia infection using reverse line blot assay. Evidence of spotted fever group Rickettsia was obtained. We detected Rickettsia felis in fleas, Rickettsia massiliae Bar 29 and the Rickettsia conorii Israeli spotted fever strain in ticks, and Rickettsia conorii subsp. conorii and Rickettsia spp. in both arthropods. The sensitivity of the adopted technique allowed the identification of a new association between fleas and R. conorii subsp. conorii species. The presence of these vector-borne Rickettsia infections should be considered when diagnosing this disease in humans in Tunisia. PMID:24226919

Kinematic development of the Tibetan Plateau's northern margin: A traverse across the Qilian Shan-Nan Shan thrust belt

NASA Astrophysics Data System (ADS)

Zuza, A. V.; Levy, D. A.; Wang, Z.; Xiong, X.; Chen, X.

2017-12-01

The active Cenozoic Qilian Shan-Nan Shan thrust belt defines the northern margin of the Tibetan Plateau. The kinematic development of this thrust belt has implications models of plateau growth and Himalayan-Tibetan orogen strain accommodation. We present new field observations and analytical data from a traverse across the 350-km-wide doubly vergent Qilian Shan, which is bound by the south-dipping North Qilian thrust system in the north and the north-dipping range-bounding Qinghai Nanshan-Dulan Shan thrust system in the south. These faults, and several other major thrusts within the thrust-belt interior, disrupt relatively thick Oligocene-Miocene basin deposits. Of note, many of the thrust faults across the width of the Qilian Shan have Quaternary fault scarps, indicating that active deformation is distributed and not only concentrated along the northern frontal faults. By integrating our detailed structural traverse with new geophysical observations and thermochronology data across the northern plateau margin, we construct a kinematic model for the development of the Tibetan Plateau's northern margin. Deformation initiated in the Eocene-Oligocene along the north-dipping Qinghai Nanshan-Dulan Shan and south-dipping Tuolai Nan Shan thrusts, the latter of which then defined the northern boundary of the Tibetan Plateau. This early deformation was focused along preexisting early Paleozoic structures. A 200-km-wide basin formed between these ranges, and from the Miocene to present, new thrust- and strike-slip-fault-bounded ranges developed, including the north-directed North Qilian and the south-directed Tuolai Nan thrusts. Thus, our observations do not support northward propagating thrust-belt expansion. Instead, we envision that the initial thrust-belt development generated a wide Oligocene-Miocene north-plateau basin that was subsequently disintegrated by later Miocene to present thrusting and strike-slip faulting. Ultimately, the Qilian Shan-Nan Shan thrust belt

Harvesting systems for the northern forest hardwoods

Treesearch

Chris B. LeDoux

2011-01-01

This monograph is a summary of research results and environmental compliance measures for timber harvesting operations. Data are presented from the Northern Research Station's forest inventory and analysis of 20 states in the northern forest hardwoods. Harvesting systems available in the region today are summarized. Equations for estimating harvesting costs are...

Study of the Northern Qinghai-Tibetan Plateau Permafrost Active Layer Depth Rate Using Satellite Geodetic Observations

NASA Astrophysics Data System (ADS)

Jia, Y.; Su, X.; Shum, C. K.; Kim, J. W.; Kuo, C. Y.

2015-12-01

The Tibetan Plateau is the world's largest and the highest plateau with distinct and competing surface and subsurface processes. It is the Third Pole and the World Water Tower, owing to its vast ice reservoir with the largest number of glaciers in the world, and covered by a large (1.3 to 1.6 million km2) layer of discontinuous and sporadic alpine permafrost. The thawing over Tibetan Plateau permafrost regions is thought to be more severe compared with other high latitude permafrost regions by the fact that the permafrost is warm. During the past few decades, 82% of Tibetan Plateau glaciers have retreated and 10% permafrost has degraded. The overall mean active layer depth (ALD) rate increase over the Plateau is 1.4 cm yr-1, 1980-2001, based on model studies and comparison with in situ borehole data. Here we report on the work in progress to quantify ALD rate increase in the northern Tibetan Plateau near the Tibetan national highway, using multi-band SAR/InSAR for improved the thermokarst surface classification, Envisat radar altimetry and ALOS-1 InSAR observed land subsidence, ALD modeling for the various thermokarst surface to relate to subsidence measurements, and the associated validations using available in situ borehole subsidence measurements.

Novel diagnostic procedure for determining metastasis to sentinel lymph nodes in breast cancer using a semi-dry dot-blot method.

PubMed

Otsubo, Ryota; Oikawa, Masahiro; Hirakawa, Hiroshi; Shibata, Kenichiro; Abe, Kuniko; Hayashi, Tomayoshi; Kinoshita, Naoe; Shigematsu, Kazuto; Hatachi, Toshiko; Yano, Hiroshi; Matsumoto, Megumi; Takagi, Katsunori; Tsuchiya, Tomoshi; Tomoshige, Koichi; Nakashima, Masahiro; Taniguchi, Hideki; Omagari, Takeyuki; Itoyanagi, Noriaki; Nagayasu, Takeshi

2014-02-15

We developed an easy, quick and cost-effective detection method for lymph node metastasis called the semi-dry dot-blot (SDB) method, which visualizes the presence of cancer cells with washing of sectioned lymph nodes by anti-pancytokeratin antibody, modifying dot-blot technology. We evaluated the validity and efficacy of the SDB method for the diagnosis of lymph node metastasis in a clinical setting (Trial 1). To evaluate the validity of the SDB method in clinical specimens, 180 dissected lymph nodes from 29 cases, including breast, gastric and colorectal cancer, were examined. Each lymph node was sliced at the maximum diameter and the sensitivity, specificity and accuracy of the SDB method were determined and compared with the final pathology report. Metastasis was detected in 32 lymph nodes (17.8%), and the sensitivity, specificity and accuracy of the SDB method were 100, 98.0 and 98.3%, respectively (Trial 2). To evaluate the efficacy of the SDB method in sentinel lymph node (SLN) biopsy, 174 SLNs from 100 cases of clinically node-negative breast cancer were analyzed. Each SLN was longitudinally sliced at 2-mm intervals and the sensitivity, specificity, accuracy and time required for the SDB method were determined and compared with the intraoperative pathology report. Metastasis was detected in 15 SLNs (8.6%), and the sensitivity, specificity, accuracy and mean required time of the SDB method were 93.3, 96.9, 96.6 and 43.3 min, respectively. The SDB method is a novel and reliable modality for the intraoperative diagnosis of SLN metastasis. © 2013 UICC.

A Secondary Antibody-Detecting Molecular Weight Marker with Mouse and Rabbit IgG Fc Linear Epitopes for Western Blot Analysis.

PubMed

Lin, Wen-Wei; Chen, I-Ju; Cheng, Ta-Chun; Tung, Yi-Ching; Chu, Pei-Yu; Chuang, Chih-Hung; Hsieh, Yuan-Chin; Huang, Chien-Chiao; Wang, Yeng-Tseng; Kao, Chien-Han; Roffler, Steve R; Cheng, Tian-Lu

2016-01-01

Molecular weight markers that can tolerate denaturing conditions and be auto-detected by secondary antibodies offer great efficacy and convenience for Western Blotting. Here, we describe M&R LE protein markers which contain linear epitopes derived from the heavy chain constant regions of mouse and rabbit immunoglobulin G (IgG Fc LE). These markers can be directly recognized and stained by a wide range of anti-mouse and anti-rabbit secondary antibodies. We selected three mouse (M1, M2 and M3) linear IgG1 and three rabbit (R1, R2 and R3) linear IgG heavy chain epitope candidates based on their respective crystal structures. Western blot analysis indicated that M2 and R2 linear epitopes are effectively recognized by anti-mouse and anti-rabbit secondary antibodies, respectively. We fused the M2 and R2 epitopes (M&R LE) and incorporated the polypeptide in a range of 15-120 kDa auto-detecting markers (M&R LE protein marker). The M&R LE protein marker can be auto-detected by anti-mouse and anti-rabbit IgG secondary antibodies in standard immunoblots. Linear regression analysis of the M&R LE protein marker plotted as gel mobility versus the log of the marker molecular weights revealed good linearity with a correlation coefficient R2 value of 0.9965, indicating that the M&R LE protein marker displays high accuracy for determining protein molecular weights. This accurate, regular and auto-detected M&R LE protein marker may provide a simple, efficient and economical tool for protein analysis.

Tectonics and Current Plate Motions of Northern Vancouver Island and the Adjacent Mainland

NASA Astrophysics Data System (ADS)

Jiang, Y.; Leonard, L. J.; Henton, J.; Hyndman, R. D.

2016-12-01

Northern Vancouver Island comprises a complex transition zone along the western margin of the North America plate, between the subducting Juan de Fuca plate to the south and the transcurrent Queen Charlotte Fault to the north off Haida Gwaii. The tectonic history and seismic potential for this region are unclear. Here we present current plate motions for northern Vancouver Island and the adjacent mainland, determined from continuous and campaign GPS measurements processed in a consistent manner. Immediately to the north of the mid-Vancouver Island Nootka Fault Zone, the northern limit of Juan de Fuca plate subduction, GPS velocity vectors show slower Explorer plate subduction than the Juan de Fuca Plate. Off northernmost Vancouver Island, the Winona Block is possibly converging at a slow rate that decreases northward to zero. We find a constant northward margin-parallel translation of up to 5 mm/year from northern Vancouver Island extending to Alaska. The southern limit of this translation coincides with areas of high heat flow that may reflect extension and the northern limit of episodic tremor and slip (ETS) on the Cascadia megathrust. The origin of the northward translation is poorly understood. We find a mainland coastal shear zone extends as far south as northern Vancouver Island where the offshore plate boundary is likely subduction. The pattern of the observed coastal shear cannot reflect interseismic locking on a major offshore transcurrent fault. The geodetically determined mainland coastal zone velocities decrease landward from 5 to 0 mm/yr across a region where no active faults have been identified and there is very little current seismicity. In Haida Gwaii, oblique convergence is apparent in the GPS data, consistent with partitioning between margin-parallel and margin-perpendicular strain. After removing the margin parallel translation from the data, we determine an average maximum locking depth of 15 km for the Queen Charlotte transcurrent fault

Semiquantitative Dot Blot with the GRA8 antigen to differentiate the stages of toxoplasmosis infection.

PubMed

Costa, Juan Gabriel; Vilariño, María Julia

2018-06-01

In this work we present a novel methodology to differentiate the phases of toxoplasmosis infection: the "semiquantitative Dot Blot". It is a simple technique that does not require expensive equipment, does not involve a long technique development, and can be used in a low-complexity laboratory. In this study, two recombinant sequences of Toxoplasma gondii GRA8 antigen were used, and specific IgG antibodies were detected in selected patient samples. This method makes it possible to obtain a score for each serum and define whether the patient is in the acute or chronic phase of the infection. The sensitivity and specificity results varied depending on the antigenic sequence used. With GRA8A, 62.1% and 72.7% were obtained, while with GRA8B, 82.8% and 72.1% were obtained, respectively. Although the sensitivity and specificity values were not close to 100%, they were similar to those reported with the same antigens in ELISA. Therefore, this quantitative technique would be a good alternative to ELISA. Copyright © 2018 Elsevier B.V. All rights reserved.

2-tiered antibody testing for early and late Lyme disease using only an immunoglobulin G blot with the addition of a VlsE band as the second-tier test.

PubMed

Branda, John A; Aguero-Rosenfeld, Maria E; Ferraro, Mary Jane; Johnson, Barbara J B; Wormser, Gary P; Steere, Allen C

2010-01-01

Standard 2-tiered immunoglobulin G (IgG) testing has performed well in late Lyme disease (LD), but IgM testing early in the illness has been problematic. IgG VlsE antibody testing, by itself, improves early sensitivity, but may lower specificity. We studied whether elements of the 2 approaches could be combined to produce a second-tier IgG blot that performs well throughout the infection. Separate serum sets from LD patients and control subjects were tested independently at 2 medical centers using whole-cell enzyme immunoassays and IgM and IgG immunoblots, with recombinant VlsE added to the IgG blots. The results from both centers were combined, and a new second-tier IgG algorithm was developed. With standard 2-tiered IgM and IgG testing, 31% of patients with active erythema migrans (stage 1), 63% of those with acute neuroborreliosis or carditis (stage 2), and 100% of those with arthritis or late neurologic involvement (stage 3) had positive results. Using new IgG criteria, in which only the VlsE band was scored as a second-tier test among patients with early LD (stage 1 or 2) and 5 of 11 IgG bands were required in those with stage 3 LD, 34% of patients with stage 1, 96% of those with stage 2, and 100% of those with stage 3 infection had positive responses. Both new and standard testing achieved 100% specificity. Compared with standard IgM and IgG testing, the new IgG algorithm (with VlsE band) eliminates the need for IgM testing; it provides comparable or better sensitivity, and it maintains high specificity.

Active Tectonics of Himalayan Faults/Thrusts System in Northern India on the basis of recent & Paleo earthquake Studies

NASA Astrophysics Data System (ADS)

Kumar, S.; Biswal, S.; Parija, M. P.

2016-12-01

The Himalaya overrides the Indian plate along a decollement fault, referred as the Main Himalayan Thrust (MHT). The 2400 km long Himalayan mountain arc in the northern boundary of the Indian sub-continent is one of the most seismically active regions of the world. The Himalayan Frontal Thrust (HFT) is characterized by an abrupt physiographic and tectonic break between the Himalayan front and the Indo-Gangetic plain. The HFT represents the southern surface expression of the MHT on the Himalayan front. The tectonic zone between the Main Boundary Thrust (MBT) and the HFT encompasses the Himalayan Frontal Fault System (HFFS). The zone indicates late Quaternary-Holocene active deformation. Late Quaternary intramontane basin of Dehradun flanked to the south by the Mohand anticline lies between the MBT and the HFT in Garhwal Sub Himalaya. Slip rate 13-15 mm/yr has been estimated on the HFT based on uplifted strath terrace on the Himalyan front (Wesnousky et al. 2006). An out of sequence active fault, Bhauwala Thrust (BT), is observed between the HFT and the MBT. The Himalayan Frontal Fault System includes MBT, BT, HFT and PF active fault structures (Thakur, 2013). The HFFS structures were developed analogous to proto-thrusts in subduction zone, suggesting that the plate boundary is not a single structure, but series of structures across strike. Seismicity recorded by WIHG shows a concentrated belt of seismic events located in the Main Central Thrust Zone and the physiographic transition zone between the Higher and Lesser Himalaya. However, there is quiescence in the Himalayan frontal zone where surface rupture and active faults are reported. GPS measurements indicate the segment between the southern extent of microseismicity zone and the HFT is locked. The great earthquake originating in the locked segment rupture the plate boundary fault and propagate to the Himalaya front and are registered as surface rupture reactivating the fault in the HFFS.

Northern Eurasia Future Initiative: Facing the Challenges of Global Change in the 21st century

NASA Astrophysics Data System (ADS)

Groisman, Pavel; Gutman, Garik; Gulev, Sergey; Maksyutov, Shamil; Qi, Jiaguo

2016-04-01

During the past 12 years, the Northern Eurasia Earth Science Partnership Initiative (NEESPI) - an interdisciplinary program of internationally-supported Earth systems and science research - has addressed large-scale and long-term manifestations of climate and environmental changes over Northern Eurasia and their impact on the Global Earth system. With more than 1500 peer-reviewed journal publications and 40 books to its credit, NEESPI's activities resulted in significant scientific outreach. This created a new research realm through self-organization of NEESPI scientists in a broad research network, accumulation of knowledge while developing new tools (observations, models, and collaborative networks) and producing new, exciting results that can be applied to directly support decision-making for societal needs. This realm was summed up at the Synthesis NEESPI Workshop in Prague, Czech Republic (April 9-12, 2015) where it was decided to shift gradually the foci of regional studies in Northern Eurasia towards applications with the following major Science Question: " What dynamic and interactive change(s) will affect societal well-being, activities, and health, and what might be the mitigation and adaptation strategies that could support sustainable development and decision-making activities in Northern Eurasia?". To answer this question requires a stronger socio-economic component in the ongoing and future regional studies focused on sustainable societal development under changing climatic and environmental conditions, especially, under conditions when societal decision-making impacts and feeds back on the environment. This made the NEESPI studies closer to the ICSU research initiative "Future Earth". Accordingly, the NEESPI Research Team decided to reorganize in the nearest future NEESPI into "Northern Eurasia Future Initiative" (NEFI) and began development of its Programmatic White Paper (in preparation at the time of this abstract submission). The NEFI research

Regulation of pancreatic stellate cell activation by Notch3.

PubMed

Song, Haiyan; Zhang, Yuxiang

2018-01-05

Activated pancreatic stellate cells (PaSCs) are the key cellular source of cancer-associated fibroblasts in the pancreatic stroma of patients with pancreatic ductal adenocarcinoma (PDAC), however, the activation mechanism of PaSCs is not yet known. The Notch signaling pathway, components of which are expressed in stromal cells, is involved in the fibrosis of several organs, including the lung and liver. In the current study, we investigated whether Notch signal transduction is involved in PaSC activation in PDAC. The expression of Notch signaling pathway components in human PDAC was examined via immunohistochemical staining and assessed in mouse PaSCs using RT-qPCR and western blotting. Notch3 expression in both PDAC stromal cells and activated mouse PaSCs was evaluated using immunofluorescence, RT-qPCR and western blotting. The impact of siRNA-mediated Notch3 knockdown on PaSC activation was detected with RT-qPCR and western blotting, and the impact on PaSC proliferation and migration was detected using CCK-8 assays and scratch experiments. The effect of conditioned medium from PaSCs activated with Notch3 siRNA on pancreatic cancer (LTPA) cells was also detected with CCK-8 assays and scratch experiments. The data were analyzed for statistical significance using Student's t-test. Notch3 was overexpressed in both human PDAC stromal cells and activated mouse PaSCs, and Notch3 knockdown with Notch3 siRNA decreased the proliferation and migration of mouse PaSCs. The levels of markers related to PaSC activation, such as α-smooth muscle actin (α-SMA), collagen I and fibronectin, decreased in response to Notch3 knockdown, indicating that Notch3 plays an important role in PaSC activation. Furthermore, we confirmed that inhibition of PaSC activation via Notch3 siRNA reduced the proliferation and migration of PaSC-induced mouse pancreatic cancer (LTPA) cells. Notch3 inhibition in PaSCs can inhibit the activation, proliferation and migration of PaSCs and reduce the Pa

The hSK4 (KCNN4) isoform is the Ca2+-activated K+ channel (Gardos channel) in human red blood cells.

PubMed

Hoffman, Joseph F; Joiner, William; Nehrke, Keith; Potapova, Olga; Foye, Kristen; Wickrema, Amittha

2003-06-10

The question is, does the isoform hSK4, also designated KCNN4, represent the small conductance, Ca2+-activated K+ channel (Gardos channel) in human red blood cells? We have analyzed human reticulocyte RNA by RT-PCR, and, of the four isoforms of SK channels known, only SK4 was found. Northern blot analysis of purified and synchronously growing human erythroid progenitor cells, differentiating from erythroblasts to reticulocytes, again showed only the presence of SK4. Western blot analysis, with an anti-SK4 antibody, showed that human erythroid progenitor cells and, importantly, mature human red blood cell ghost membranes, both expressed the SK4 protein. The Gardos channel is known to turn on, given inside Ca2+, in the presence but not the absence of external Ko+ and remains refractory to Ko+ added after exposure to inside Ca2+. Heterologously expressed SK4, but not SK3, also shows this behavior. In inside-out patches of red cell membranes, the open probability (Po) of the Gardos channel is markedly reduced when the temperature is raised from 27 to 37 degrees C. Net K+ efflux of intact red cells is also reduced by increasing temperature, as are the Po values of inside-out patches of Chinese hamster ovary cells expressing SK4 (but not SK3). Thus the envelope of evidence indicates that SK4 is the gene that codes for the Gardos channel in human red blood cells. This channel is important pathophysiologically, because it represents the major pathway for cell shrinkage via KCl and water loss that occurs in sickle cell disease.

The Alcoholism Situation in a Northern City

ERIC Educational Resources Information Center

Martynov, M. Iu.; Martynova, D. Iu.

2012-01-01

Alcohol abuse in Russia has been increasing in recent years, especially in northern regions, as has the incidence of alcohol-related disease rates. A survey was conducted in Surgut (the Khanty-Mansi autonomous okrug) that determined the factors lending to the prevalence of alcohol abuse among the population of the northern city and assessed the…

Seasonal prevailing surface winds in Northern Serbia

NASA Astrophysics Data System (ADS)

Tošić, Ivana; Gavrilov, Milivoj B.; Marković, Slobodan B.; Ruman, Albert; Putniković, Suzana

2018-02-01

Seasonal prevailing surface winds are analyzed in the territory of Northern Serbia, using observational data from 12 meteorological stations over several decades. In accordance with the general definition of prevailing wind, two special definitions of this term are used. The seasonal wind roses in 16 directions at each station are analyzed. This study shows that the prevailing winds in Northern Serbia have northwestern and southeastern directions. Circulation weather types over Serbia are presented in order to determine the connections between the synoptic circulations and prevailing surface winds. Three controlling pressure centers, i.e., the Mediterranean cyclone, Siberian high, and the Azores anticyclone, appear as the most important large-scale factors that influence the creation of the prevailing winds over Northern Serbia. Beside the synoptic cause of the prevailing winds, it is noted that the orography of the eastern Balkans has a major influence on the winds from the second quadrant. It was found that the frequencies of circulation weather types are in agreement with those of the prevailing winds over Northern Serbia.

Integrative investigations on sediments in the Belauer See catchment (northern Germany)

NASA Astrophysics Data System (ADS)

Dreibrodt, Stefan

2015-04-01

The Holocene history of lake development, catchment vegetation, soil formation and human impact since the onset of the Neolithic period was reconstructed via the analysis of sediment sequences at Lake Belau (northern Germany). The chronology of the annually laminated lake sediment sequence was established via varve counts, radiocarbon dating and tephra analysis. Sequences of colluvial sediments and buried soils studied in 19 large exposures and supplementing auger cores within the lake catchment area were dated via radiocarbon dating and archaeological dating of embedded artifacts. The long term development of the lake status was found to be strongly influenced by local human activity. This is indicated by coincidence of phases of landscape openness deduced from pollen data with input of detritus and solutes into the lake. A comparison with palaeo-climate reconstructions reveals that calcite precipitation in the lake reflects climate variability at least to a certain degree. Calibrating the sediment record of the sub-recent lake sediments (micro-facies) on limnological and meteorological records discovered the influence of the NAO as well as solar activity on the limnological processes during the last century reflected by distinguished sedimentation patterns. A comparative study of additional laminated surface sediment sequences from northern Germany corroborates the results. A high resolution reconstruction of Neolithic weather conditions in northern Germany based on the varves of Lake Belau and Lake Poggensee was facilitated by the calibration. The quantitative records of sediments originating from soil erosion (colluvial sediments, allochthonous input into the lake) illustrate the dominance of short distance surface processes (slopes) acting in Holocene mid-latitude landscapes. Coincidence of gully incision in the lake catchment area and increased allochthonous input into the lake indicates the former occurrence of hydrological high energy runoff events (e. g

Prolonged fasting increases purine recycling in post-weaned northern elephant seals.

PubMed

Soñanez-Organis, José Guadalupe; Vázquez-Medina, José Pablo; Zenteno-Savín, Tania; Aguilar, Andres; Crocker, Daniel E; Ortiz, Rudy M

2012-05-01

Northern elephant seals are naturally adapted to prolonged periods (1-2 months) of absolute food and water deprivation (fasting). In terrestrial mammals, food deprivation stimulates ATP degradation and decreases ATP synthesis, resulting in the accumulation of purines (ATP degradation byproducts). Hypoxanthine-guanine phosphoribosyl transferase (HGPRT) salvages ATP by recycling the purine degradation products derived from xanthine oxidase (XO) metabolism, which also promotes oxidant production. The contributions of HGPRT to purine recycling during prolonged food deprivation in marine mammals are not well defined. In the present study we cloned and characterized the complete and partial cDNA sequences that encode for HGPRT and xanthine oxidoreductase (XOR) in northern elephant seals. We also measured XO protein expression and circulating activity, along with xanthine and hypoxanthine plasma content in fasting northern elephant seal pups. Blood, adipose and muscle tissue samples were collected from animals after 1, 3, 5 and 7 weeks of their natural post-weaning fast. The complete HGPRT and partial XOR cDNA sequences are 771 and 345 bp long and encode proteins of 218 and 115 amino acids, respectively, with conserved domains important for their function and regulation. XOR mRNA and XO protein expression increased 3-fold and 1.7-fold with fasting, respectively, whereas HGPRT mRNA (4-fold) and protein (2-fold) expression increased after 7 weeks in adipose tissue and muscle. Plasma xanthine (3-fold) and hypoxanthine (2.5-fold) levels, and XO (1.7- to 20-fold) and HGPRT (1.5- to 1.7-fold) activities increased during the last 2 weeks of fasting. Results suggest that prolonged fasting in elephant seal pups is associated with increased capacity to recycle purines, which may contribute to ameliorating oxidant production and enhancing the supply of ATP, both of which would be beneficial during prolonged food deprivation and appear to be adaptive in this species.

Prolonged fasting increases purine recycling in post-weaned northern elephant seals

PubMed Central

Soñanez-Organis, José Guadalupe; Vázquez-Medina, José Pablo; Zenteno-Savín, Tania; Aguilar, Andres; Crocker, Daniel E.; Ortiz, Rudy M.

2012-01-01

SUMMARY Northern elephant seals are naturally adapted to prolonged periods (1–2 months) of absolute food and water deprivation (fasting). In terrestrial mammals, food deprivation stimulates ATP degradation and decreases ATP synthesis, resulting in the accumulation of purines (ATP degradation byproducts). Hypoxanthine-guanine phosphoribosyl transferase (HGPRT) salvages ATP by recycling the purine degradation products derived from xanthine oxidase (XO) metabolism, which also promotes oxidant production. The contributions of HGPRT to purine recycling during prolonged food deprivation in marine mammals are not well defined. In the present study we cloned and characterized the complete and partial cDNA sequences that encode for HGPRT and xanthine oxidoreductase (XOR) in northern elephant seals. We also measured XO protein expression and circulating activity, along with xanthine and hypoxanthine plasma content in fasting northern elephant seal pups. Blood, adipose and muscle tissue samples were collected from animals after 1, 3, 5 and 7 weeks of their natural post-weaning fast. The complete HGPRT and partial XOR cDNA sequences are 771 and 345 bp long and encode proteins of 218 and 115 amino acids, respectively, with conserved domains important for their function and regulation. XOR mRNA and XO protein expression increased 3-fold and 1.7-fold with fasting, respectively, whereas HGPRT mRNA (4-fold) and protein (2-fold) expression increased after 7 weeks in adipose tissue and muscle. Plasma xanthine (3-fold) and hypoxanthine (2.5-fold) levels, and XO (1.7- to 20-fold) and HGPRT (1.5- to 1.7-fold) activities increased during the last 2 weeks of fasting. Results suggest that prolonged fasting in elephant seal pups is associated with increased capacity to recycle purines, which may contribute to ameliorating oxidant production and enhancing the supply of ATP, both of which would be beneficial during prolonged food deprivation and appear to be adaptive in this species. PMID

Lightning Mapping Observations During DC3 in Northern Colorado

NASA Astrophysics Data System (ADS)

Krehbiel, P. R.; Rison, W.; Thomas, R. J.

2012-12-01

The Deep Convective Clouds and Chemistry Experiment (DC3) was conducted in three regions covered by Lightning Mapping Arrays (LMAs): Oklahoma and west Texas, northern Alabama, and northern Colorado. In this and a companion presentation, we discuss results obtained from the newly-deployed North Colorado LMA. The CO LMA revealed a surprising variety of lightning-inferred electrical structures, ranging from classic tripolar, normal polarity storms to several variations of anomalously electrified systems. Storms were often characterized by a pronounced lack or deficit of cloud-to-ground discharges (negative or positive), both in relative and absolute terms compared to the large amount of intracloud activity revealed by the LMA. Anomalous electrification was observed in small, localized storms as well as in large, deeply convective and severe storms. Another surprising observation was the frequent occurrence of embedded convection in the downwind anvil/outflow region of large storm systems. Observations of discharges in low flash rate situations over or near the network are sufficiently detailed to enable branching algorithms to estimate total channel lengths for modeling NOx production. However, this will not be possible in large or distant storm systems where the lightning was essentially continuous and structurally complex, or spatially noisy. Rather, a simple empirical metric for characterizing the lightning activity can be developed based on the number of located VHF radiation sources, weighted for example by the peak source power, source altitude, and temporal duration.

The MAP Kinase Cascade Is Activated prior to the Induction of Gliosis in the 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) Model of Dopaminergic Neurotoxicity.

PubMed

Callaghan, James P; Martin, Parthena M; Mass, Marc J

1998-05-01

Injury to the central nervous system (CNS) provokes microglial activation and astrocytic hypertrophy at the site of damage. The signaling events that underlie these cellular responses remain unknown. Recent evidence has implicated tyrosine phosphorylation systems, in general, and the mitogen-activated protein kinase (MAP kinase) cascade, in particular, in the mediation of growth-associated events linked to neural degeneration, such as glial activation. 1 Moreover, an increase in the mRNA coding for the 14.3.3 protein, a known regulator of the MAP kinase pathway, 2 appears to be involved in methamphetamine neurotoxicity. 3 To examine the potential role of these protein kinase pathways in drug-induced damage to the CNS, we used the dopaminergic neurotoxicant, 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP), to damage nerve terminals in the mouse neostriatum and elicit a glial reaction. The onset of reactive gliosis then was verified by Northern blot analysis of glial fibrillary acidic protein (GFAP) mRNA and qualified by enzyme-linked immunosorbent assay (ELISA) of GFAP (protein). A single administration of MPTP (12.5 mg/kg, subcutaneously (s.c.)) to the C57B1/6J mouse resulted in a 10-fold increase in GFAP mRNA by 1 day and a 4-fold increase in GFAP (protein) by 2 days. To determine the potential role of protein tyrosine phosphorylation and MAP kinase activation in these events, blots of striatal homogenates were probed with antibodies directed against phospho-tyr 204 and phospho-thr 202, residues corresponding to the active sites of p42/44 MAP kinase. After mice were sacrificed by focused microwave irradiation to preserve steady-state phosphorylation, proteins from striatal homogenates were resolved by sodium dodecylsulfate polyacrylamide gel electrophoresis (SDS-PAGE). Immunoblots of these samples showed a number of phosphotyrosine-labeled bands, but there were no apparent differences between control and MPTP groups. In contrast, phospho-MAP kinase was

Accessing northern California earthquake data via Internet

NASA Astrophysics Data System (ADS)

Romanowicz, Barbara; Neuhauser, Douglas; Bogaert, Barbara; Oppenheimer, David

The Northern California Earthquake Data Center (NCEDC) provides easy access to central and northern California digital earthquake data. It is located at the University of California, Berkeley, and is operated jointly with the U.S. Geological Survey (USGS) in Menlo Park, Calif., and funded by the University of California and the National Earthquake Hazard Reduction Program. It has been accessible to users in the scientific community through Internet since mid-1992.The data center provides an on-line archive for parametric and waveform data from two regional networks: the Northern California Seismic Network (NCSN) operated by the USGS and the Berkeley Digital Seismic Network (BDSN) operated by the Seismographic Station at the University of California, Berkeley.

Periodic ReMi-MASW surveys on active landslides in the Emilia Romagna region (Northern Apennines)

NASA Astrophysics Data System (ADS)

Bertello, Lara; Squarzoni, Gabriela; Berti, Matteo

2017-04-01

From January 2014 to December 2016, several combined ReMi-MASW seismic surveys (Refraction Microtremor- Multi Channel Analysis of Surface Waves) were conducted on active landslides. All the landslides are located in the Emilia Romagna region (Northern Apennines), and were classified as: 1) flows and 2) slides. For the seismic campaigns, we used eight vertical polarized geophones at 4.5 Hz, placed at intervals of 2 m each, and a total array length in the range of 10-14 m. As suggested by Louie (2001), we used a single geophone sensor at each channel, with the geophones connected to a SoilSpy Rosina acquisition system (Micromed spa). The first 5 minutes of each acquisition were performed in the passive mode, just acquiring the ambient seismic noise, and the last minute was in the active mode. For the active source, we used the jump of an operator at 5 m from the first geophone. The MASW approach relies on mid-to-high frequency artificial sources and usually provides better results in the high frequency domain (i.e. low depth). The ReMi analysis relies on ambient noise, which is ubiquitous and spans a wider frequency range, potentially working better in the mid-to low frequency domain (i.e. mid-to-high depths). The surveys were interpreted with Grilla (Micromed Software) with a manual procedure. ReMi-MASW lines were done both inside and outside the landslide area to compare the shear wave velocity (Vs) of the displaced soil with that of the source material. Often, the first campaign survey was performed in the range of 15 days from the reactivation of the landslide, than, where it was possible, we conducted periodic ReMi-MASW acquisitions, in order to evaluate the Vs variation over time. Analyzing all the data, it is clear that the Vs detected in the flow types landslide are lower than the ones detected in the slide types. It is also interesting to observe the increase of shear wave velocity over time, due to the consolidation of the material and the decrease of void

Distribution of cholecystokinin mRNA and peptides in the human brain.

PubMed

Lindefors, N; Brené, S; Kopp, J; Lindén, A; Brodin, E; Sedvall, G; Persson, H

1991-01-01

Expression of preprocholecystokinin mRNA was studied in regions of post mortem human brain using RNA blot analysis (Northern blot) and in situ hybridization. Northern blot analysis using a cDNA probe showed high levels of an approximately 0.8 kb preprocholecystokinin mRNA in all regions of neocortex examined. Lower levels of preprocholecystokinin mRNA were detected in amygdaloid body and thalamus. In situ hybridization analysis using the same cDNA probe revealed numerous weakly labelled neurons in different areas of human neocortex and less numerous neurons in hippocampus and amygdaloid body. High-performance liquid-chromatography and gel-chromatography combined with radioimmunoassay of cholecystokinin-like immunoreactivity from human cerebral cortex and caudate nucleus revealed two major forms, one coeluting with sulphated cholecystokinin-8 and the other coeluting with sulphated cholecystokinin-58. Two minor components coeluting with cholecystokinin-4 and cholecystokinin-5 were also detected. The finding of cholecystokinin-like immunoreactivity corresponding to cholecystokinin-8 and cholecystokinin-58 in caudate nucleus where no preprocholecystokinin mRNA was found, indicates the presence of these peptides in afferent nerve terminals.

Compositions and methods for detecting gene rearrangements and translocations

DOEpatents

Rowley, Janet D.; Diaz, Manuel O.

2000-01-01

Disclosed is a series of nucleic acid probes for use in diagnosing and monitoring certain types of leukemia using, e.g., Southern and Northern blot analyses and fluorescence in situ hybridization (FISH). These probes detect rearrangements, such as translocations involving chromosome band 11q23 with other chromosomes bands, including 4q21, 6q27, 9p22, 19p13.3, in both dividing leukemic cells and interphase nuclei. The breakpoints in all such translocations are clustered within an 8.3 kb BamHI genomic region of the MLL gene. A novel 0.7 kb BamH1 cDNA fragment derived from this gene detects rearrangements on Southern blot analysis with a single BamHI restriction digest in all patients with the common 11q23 translocations and in patients with other 11q23 anomalies. Northern blot analyses are presented demonstrating that the MLL gene has multiple transcripts and that transcript size differentiates leukemic cells from normal cells. Also disclosed are MLL fusion proteins, MLL protein domains and anti-MLL antibodies.

Teaching Citizenship in the Faith School: Qualitative Evidence from Separate Schools in Northern Ireland

ERIC Educational Resources Information Center

Donnelly, Caitlin; Burns, Stephanie

2017-01-01

The purpose of this paper is to examine how teachers teach and students learn about citizenship education in two faith-based schools in Northern Ireland. The data show that participants in the Catholic school were confident in their own identity; teachers encouraged active engagement with contentious, conflict-related debates and students…

Saharan Dust, Transport Processes, and Possible Impacts on Hurricane Activities

NASA Technical Reports Server (NTRS)

Lau, William K. M.; Kim, K. M.

2010-01-01

In this paper, we present observational evidence of significant relationships between Saharan dust outbreak, and African Easterly wave activities and hurricane activities. We found two dominant paths of transport of Saharan dust: a northern path, centered at 25degN associated with eastward propagating 6-19 days waves over northern Africa, and a southern path centered at 15degN, associated with the AEW, and the Atlantic ITCZ. Seasons with stronger dust outbreak from the southern path are associated with a drier atmosphere over the Maximum Development Region (MDR) and reduction in tropical cyclone and hurricane activities in the MDR. Seasons with stronger outbreak from the northern path are associated with a cooler N. Atlantic, and suppressed hurricane in the western Atlantic basin.

Northern Exports of softwood products, 1980-85

Treesearch

James E. Granskog

1988-01-01

Assessment of export opportunities for softwood products from the North has been hampered by a lack of information describing foreign sales from the region. This article describes the value and volume of softwood products exported from the northern United States for 1980 through 1985. Roundwood productsmostly spruce logs from Maine and Vermont- are the largest northern...

Soil organic carbon pools in the northern circumpolar permafrost region

Treesearch

C. Tarnocai; J.G. Canadell; E.A.G. Schuur; P. Kuhry; G. Mazhitova; S. Zimov

2009-01-01

The Northern Circumpolar Soil Carbon Database was developed to determine carbon pools in soils of the northern circumpolar permafrost region. Here we report a new estimate of the carbon pools in soils of the northern permafrost region, including deeper layers and pools not accounted for in previous analyses.

Diets and foraging behavior of northern Spotted Owls in Oregon

USGS Publications Warehouse

Forsman, E.D.; Anthony, R.G.; Meslow, E.C.; Zabel, C.J.

2004-01-01

We describe local, regional, and annual variation in diets of northern Spotted Owls (Strix occidentalis caurina) in Oregon based on 24 497 prey collected at 1118 owl territories in 1970-2003. The sample included 91.5% mammals, 4.3% birds, 4.1% insects, and 0.1% other prey. The diet included ???131 species, including 49 mammals, 41 birds, 3 reptiles, 1 frog, 1 crayfish, 1 scorpion, 2 snails, and 33 species of insects. On average, 91.9 ?? 0.3% (SE) of prey in the diet were nocturnal animals, 3.3 ?? 0.2% were diurnal, and 4.8 ?? 0.2% were active both day and night. Of the prey captured, 50.5 ?? 0.8% were arboreal, 18.7 ?? 0.7% were scansorial, 4.8 ?? 0.2% were aerial, and 26.0 = 0.7% were terrestrial. Mean mass of prey was 116.6 ?? 6.5 g. Diets varied among owl territories, geographic regions, and years; but were generally dominated by four to six species of nocturnal mammals, including northern flying squirrels (Glaucomys sabrinus), woodrats (Neotoma fuscipes and N. cinerea), red tree voles (Arborimus longicaudus), western red-backed voles (Clethrionomys californicus), deer mice (Peromyscus maniculatus), or gophers (Thomomys spp.). Estimates of dietary evenness were low, indicating diets dominated by a few species of mammals. Forest management practices that produce healthy populations of arboreal and scansorial mammals such as flying squirrels, woodrats, and red tree voles should benefit northern Spotted Owls in Oregon and Washington. ?? 2004 The Raptor Research Foundation, Inc.

Northern squawfish Ptychochelius oregonensis, O2 consumption rate: Effects of temperature and body size

USGS Publications Warehouse

Cech, Joseph J.; Castleberry, Daniel T.; Hopkins, Todd E.; Petersen, James H.

1994-01-01

Northern squawfish, Ptychocheilus oregonensis (live weight range 0.361–1.973 kg), O2consumption was measured with temperature-controlled, flow-through respirometers for >24 h. Mean standard O2 consumption rate of northern squawfish increased with acclimation temperature: 24.3, 49.1, 75.0, and 89.4 mg∙kg−0.67∙h−1 at 9, 15, 18, and 21 °C, respectively. Q10analysis showed that O2 consumption rate temperature sensitivity was greatest at the intermediate acclimation temperatures (15–18 °C, Q10 = 4.10), moderate at the lower acclimation temperatures (9–15 °C, Q10 = 3.23), and lowest at the higher acclimation temperatures (18–21 °C, Q10 = 1.80). Overall Q10 was 2.96 (9–21 °C). Body size (W, grams) and temperature (T, degrees Celcius) were related to O2 consumption (, grams per gram per day) by W−0.285∙e0.105T. Northern squawfish red to white muscle ratios significantly exceeded those of rainbow trout, Oncorhynchus mykiss, in cross sections at 50 and 75% of standard length. High metabolic rates and red to white muscle ratios argue for comparability of northern squawfish with active predators such as sympatric rainbow trout.

Expression of the serine/threonine kinase hSGK1 in chronic viral hepatitis.

PubMed

Fillon, Sophie; Klingel, Karin; Wärntges, Simone; Sauter, Martina; Gabrysch, Sabine; Pestel, Sabine; Tanneur, Valerie; Waldegger, Siegfried; Zipfel, Annette; Viebahn, Richard; Häussinger, Dieter; Bröer, Stefan; Kandolf, Reinhard; Lang, Florian

2002-01-01