Sample records for afar hot spot

  1. Solar 'hot spots' are still hot

    NASA Technical Reports Server (NTRS)

    Bai, Taeil

    1990-01-01

    Longitude distributions of solar flares are not random but show evidence for active zones (or hot spots) where flares are concentrated. According to a previous study, two hot spots in the northern hemisphere, which rotate with a synodic period of about 26.72 days, produced the majority of major flares, during solar cycles 20 and 21. The more prominent of these two hot spots is found to be still active during the rising part of cycle 22, producing the majority of northern hemisphere major flares. The synodic rotation period of this hot spot is 26.727 + or - 0.007 days. There is also evidence for hot spots in the southern hemisphere. Two hot spots separated by 180 deg are found to rotate with a period of 29.407 days, with one of them having persisted in the same locations during cycles 19-22 and the other, during cycles 20-22.

  2. The distribution of hot spots

    NASA Technical Reports Server (NTRS)

    Stefanick, M.; Jurdy, D. M.

    1984-01-01

    Statistical analyses are compared for two published hot spot data sets, one minimal set of 42 and another larger set of 117, using three different approaches. First, the earths surface is divided into 16 equal-area fractions and the observed distribution of hot spots among them is analyzed using chi-square tests. Second, cumulative distributions about the principal axes of the hot spot inertia tensor are used to describe hot spot distribution. Finally, a hot spot density function is constructed for each of the two hot spot data sets. The methods all indicate that hot spots have a nonuniform distribution, even when statistical fluctuations are considered. To the first order, hot spots are concentrated on one half of of the earth's surface area; within that portion, the distribution is consistent with a uniform distribution. The observed hot spot densities for neither data set are explained solely by plate speed.

  3. Relationship between hot spot residues and ligand binding hot spots in protein-protein interfaces.

    PubMed

    Zerbe, Brandon S; Hall, David R; Vajda, Sandor; Whitty, Adrian; Kozakov, Dima

    2012-08-27

    In the context of protein-protein interactions, the term "hot spot" refers to a residue or cluster of residues that makes a major contribution to the binding free energy, as determined by alanine scanning mutagenesis. In contrast, in pharmaceutical research, a hot spot is a site on a target protein that has high propensity for ligand binding and hence is potentially important for drug discovery. Here we examine the relationship between these two hot spot concepts by comparing alanine scanning data for a set of 15 proteins with results from mapping the protein surfaces for sites that can bind fragment-sized small molecules. We find the two types of hot spots are largely complementary; the residues protruding into hot spot regions identified by computational mapping or experimental fragment screening are almost always themselves hot spot residues as defined by alanine scanning experiments. Conversely, a residue that is found by alanine scanning to contribute little to binding rarely interacts with hot spot regions on the partner protein identified by fragment mapping. In spite of the strong correlation between the two hot spot concepts, they fundamentally differ, however. In particular, while identification of a hot spot by alanine scanning establishes the potential to generate substantial interaction energy with a binding partner, there are additional topological requirements to be a hot spot for small molecule binding. Hence, only a minority of hot spots identified by alanine scanning represent sites that are potentially useful for small inhibitor binding, and it is this subset that is identified by experimental or computational fragment screening.

  4. Relationship between Hot Spot Residues and Ligand Binding Hot Spots in Protein-Protein Interfaces

    PubMed Central

    Zerbe, Brandon S.; Hall, David R.

    2013-01-01

    In the context of protein-protein interactions, the term “hot spot” refers to a residue or cluster of residues that makes a major contribution to the binding free energy, as determined by alanine scanning mutagenesis. In contrast, in pharmaceutical research a hot spot is a site on a target protein that has high propensity for ligand binding and hence is potentially important for drug discovery. Here we examine the relationship between these two hot spot concepts by comparing alanine scanning data for a set of 15 proteins with results from mapping the protein surfaces for sites that can bind fragment-sized small molecules. We find the two types of hot spots are largely complementary; the residues protruding into hot spot regions identified by computational mapping or experimental fragment screening are almost always themselves hot spot residues as defined by alanine scanning experiments. Conversely, a residue that is found by alanine scanning to contribute little to binding rarely interacts with hot spot regions on the partner protein identified by fragment mapping. In spite of the strong correlation between the two hot spot concepts, they fundamentally differ, however. In particular, while identification of a hot spot by alanine scanning establishes the potential to generate substantial interaction energy with a binding partner, there are additional topological requirements to be a hot spot for small molecule binding. Hence, only a minority of hot spots identified by alanine scanning represent sites that are potentially useful for small inhibitor binding, and it is this subset that is identified by experimental or computational fragment screening. PMID:22770357

  5. Amorphous-silicon module hot-spot testing

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.

    1985-01-01

    Hot spot heating occurs when cell short-circuit current is lower than string operating current. Amorphous cell hot spot are tested to develop the techniques required for performing reverse bias testing of amorphous cells. Also, to quantify the response of amorphous cells to reverse biasing. Guidelines are developed from testing for reducing hot spot susceptibility of amorphous modules and to develop a qualification test for hot spot testing of amorphous modules. It is concluded that amorphous cells undergo hot spot heating similarly to crystalline cells. Comparison of results obtained with submodules versus actual modules indicate heating levels lower in actual modules. Module design must address hot spot testing and hot spot qualification test conducted on modules showed no instabilities and minor cell erosion.

  6. HotRegion: a database of predicted hot spot clusters.

    PubMed

    Cukuroglu, Engin; Gursoy, Attila; Keskin, Ozlem

    2012-01-01

    Hot spots are energetically important residues at protein interfaces and they are not randomly distributed across the interface but rather clustered. These clustered hot spots form hot regions. Hot regions are important for the stability of protein complexes, as well as providing specificity to binding sites. We propose a database called HotRegion, which provides the hot region information of the interfaces by using predicted hot spot residues, and structural properties of these interface residues such as pair potentials of interface residues, accessible surface area (ASA) and relative ASA values of interface residues of both monomer and complex forms of proteins. Also, the 3D visualization of the interface and interactions among hot spot residues are provided. HotRegion is accessible at http://prism.ccbb.ku.edu.tr/hotregion.

  7. Computational Prediction of Hot Spot Residues

    PubMed Central

    Morrow, John Kenneth; Zhang, Shuxing

    2013-01-01

    Most biological processes involve multiple proteins interacting with each other. It has been recently discovered that certain residues in these protein-protein interactions, which are called hot spots, contribute more significantly to binding affinity than others. Hot spot residues have unique and diverse energetic properties that make them challenging yet important targets in the modulation of protein-protein complexes. Design of therapeutic agents that interact with hot spot residues has proven to be a valid methodology in disrupting unwanted protein-protein interactions. Using biological methods to determine which residues are hot spots can be costly and time consuming. Recent advances in computational approaches to predict hot spots have incorporated a myriad of features, and have shown increasing predictive successes. Here we review the state of knowledge around protein-protein interactions, hot spots, and give an overview of multiple in silico prediction techniques of hot spot residues. PMID:22316154

  8. Volcano-tectonic evolution of the Western Afar margin: new geochronological and structural data

    NASA Astrophysics Data System (ADS)

    Stab, Martin; Pik, Raphael; Bellahsen, Nicolas; Leroy, Sylvie; Ayalew, Dereje; Denèle, Yoann

    2013-04-01

    The rift system in NW-Afar (Ethiopia) is part of the Nubia-Somalia-Arabia triple junction located above the Afar hot spot active mainly since Oligocene times. It represents a unique natural laboratory for field study of superficial and deep lithospheric structure and process interactions during the transition between rifting and oceanic spreading in magma-rich setting. Most past field studies in Afar focused on the recognition and correlation of Afar's volcano-stratigraphic record and led to models of margin development that stress out the major trends of volcanic structures and give accordingly the following chronological "big picture". (1) 2km-thick flood basalt province emplaced at ca. 30 Ma due to hot spot activity over Jurassic to Permian sedimentary rocks and basement. (2) Rifting started around 25-20 Ma with half graben and great escarpment formation along with localization of volcanic activity in highly faulted narrower basins followed by lithospheric flexure. (3) The deformation migrated toward the rift centre with the emplacement around 8-5 Ma of bi-modal volcanics later faulted. (4) A second pulse of flood-basalt, the so-called Stratoid series, started at 4 Ma, until 1 Ma. In this contribution, we present new structural field data and lavas (U-Th/He) datings along a cross-section from the marginal graben to the Manda-Hararo active rift axis. In the newly explored Sullu Adu ranges, which were previously thought to be made of 8 Ma Dahla Basalts Fm., we mapped normal faults arrays affecting a complex magmatic series. We dated highly tilted 30 Ma pre-rift basic and silicic volcanic rocks that are unconformably overlain by syn-rift volcanics (25 to 8 Ma). This pattern is in some places either masked by unconformable thick stratoid cover or strongly eroded by dense river drainage. However, it is preserved enough to suggest a lower-than-expected extension ratio and/or the presence of major normal faults controlling seaward-dipping reflectors (SDR) emplacement

  9. Hot spots of Io

    NASA Technical Reports Server (NTRS)

    Pearl, J. C.; Sinton, W. M.

    1982-01-01

    The size and temperature, morphology and distribution, variability, possible absorption features, and processes of hot spots on Io are discussed, and an estimate of the global heat flux is made. Size and temperature information is deconvolved to obtain equivalent radius and temperature of hot spots, and simultaneously obtained Voyager thermal and imaging data is used to match hot sources with specific geologic features. In addition to their thermal output, it is possible that hot spots are also characterized by production of various gases and particulate materials; the spectral signature of SO2 has been seen. Origins for relatively stable, low temperature sources, transient high temperature sources, and relatively stable, high-tmperature sources are discussed.

  10. Concentrator hot-spot testing, phase 1

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.

    1987-01-01

    Results of a study to determine the hot-spot susceptibility of concentrator cells, to provide a hot-spot qualification test for concentrator modules, and to provide guidelines for reducing hot-spot susceptibility are presented. Hot-spot heating occurs in a photovoltaic module when the short-circuit current of a cell is lower than the string operating current forcing the cell into reverse bias with a concurrent power dissipation. Although the basis for the concentrator module hot-spot qualification test is the test developed for flat-plate modules, issues, such as providing cell illumination, introduce additional complexities into the testing procedure. The same general guidelines apply for protecting concentrator modules from hot-spot stressing as apply to flat-plate modules. Therefore, recommendations are made on the number of bypass diodes required per given number of series cells per module or source circuit. In addition, a new method for determining the cell temperature in the laboratory or in the field is discussed.

  11. The Earth's Hot Spots.

    ERIC Educational Resources Information Center

    Vink, Gregory E.; And Others

    1985-01-01

    Hot spots are isolated areas of geologic activity where volcanic eruptions, earthquakes, and upwelling currents occur far from plate boundaries. These mantle plumes are relatively stable and crustal plates drift over them. The nature and location of hot spots (with particular attention to the Hawaiian Islands and Iceland) are discussed. (DH)

  12. Computational prediction of protein hot spot residues.

    PubMed

    Morrow, John Kenneth; Zhang, Shuxing

    2012-01-01

    Most biological processes involve multiple proteins interacting with each other. It has been recently discovered that certain residues in these protein-protein interactions, which are called hot spots, contribute more significantly to binding affinity than others. Hot spot residues have unique and diverse energetic properties that make them challenging yet important targets in the modulation of protein-protein complexes. Design of therapeutic agents that interact with hot spot residues has proven to be a valid methodology in disrupting unwanted protein-protein interactions. Using biological methods to determine which residues are hot spots can be costly and time consuming. Recent advances in computational approaches to predict hot spots have incorporated a myriad of features, and have shown increasing predictive successes. Here we review the state of knowledge around protein-protein interactions, hot spots, and give an overview of multiple in silico prediction techniques of hot spot residues.

  13. Hot spot and trench volcano separations

    NASA Technical Reports Server (NTRS)

    Lingenfelter, R. E.; Schubert, G.

    1974-01-01

    It is suggested that the distribution of separations between trench volcanos located along subduction zones reflects the depth of partial melting, and that the separation distribution for hot spot volcanoes near spreading centers provides a measure of the depth of mantle convection cells. It is further proposed that the lateral dimensions of mantle convection cells are also represented by the hot-spot separations (rather than by ridge-trench distances) and that a break in the distribution of hot spot separations at 3000 km is evidence for both whole mantle convection and a deep thermal plume origin of hot spots.

  14. Rocket engine hot-spot detector

    NASA Astrophysics Data System (ADS)

    Collamore, F. N.

    1985-04-01

    On high performance devices such as rocket engines it is desirable to know if local hot spots or areas of reduced cooling margin exist. The objective of this program is to design, fabricate and test an electronic hot spot detector capable of sensing local hot spot on the exterior circumference of a regeneratively cooled combustion chamber in order to avoid hardware damage. The electronic hot spot sensor consists of an array of 120 thermocouple elements which are bonded in a flexible belt of polyimide film. The design temperature range is from +30 F to +400 F continuously with an intermittent temperature of 500 F maximum. The thermocouple belt consists of 120 equally spaced copper-Constantan thermocouple junctions which is wrapped around the OMS liquid rocket engine combustion chamber, to monitor temperatures of individual cooling channels. Each thermocouple is located over a cooling channel near the injector end of the combustion chamber. The thermocouple array sensor is held in place by a spring loaded clamp band. Analyses show that in the event of a blocked cooling channel the surface temperature of the chamber over the blocked channel will rise from a normal operating temperature of approx. 300 F to approx. 600 F. The hot spot detector will respond quickly to this change with a response time constant less than 0.05 seconds. The hot spot sensor assembly is fabricated with a laminated construction of layers of Kapton film and an outer protective layer of fiberglass reinforced silicone rubber.

  15. Hot-spot heating in central-station arrays

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.

    1983-01-01

    Hot spot tests performed on the Sacramento Municipal Utility District (SMUD) verificaton array show that current imbalance occurs, resulting in significant hot spot heating. One cause of current imbalance is differences in the average shunt resistances of parallel cell strings due to cell shunt resistance variations. In depth hot spot tests are performed on the verification array with bypass diodes. The tests had several objectives: (1) a comparison of hot spot temperatures achieved under field conditions with those obtained with the present laboratory hot spot test using similar modules; (2) an assessment of current imbalance versus cross tie frequency; and (3) an assessment of different shadow patterns and shadow densities. Instrumented modules are used to vary the number of cross ties and to measure the test-cell current and back-bias voltage. The widths, lengths, and densities of the shadows are varied to maximize the back bias voltage at maximum power current. An infrared camera is used to indicate the existence of hot spots and estimate temperature increases in conjunction with thermocouples. The results of these hot spot tests indicate a sensitivity of back bias heating to the shadow size (amount of cell coverage) and density.

  16. Hot-spot qualification testing of concentrator modules

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.; Sugimura, R. S.; Ross, R. G., Jr.

    1987-01-01

    Results of a study to determine the hot-spot susceptibility of concentrator cells, to provide a hot-spot qualification test for concentrator modules, and to provide guidelines for reducing hot-spot susceptibility are presented. Hot-spot heating occurs in a photovoltaic module when the short-circuit current of a cell is lower than the string operating current, forcing the cell into reverse bias with a concurrent power dissipation. Although the basis for the concentrator-module hot-spot qualification test is the test developed for flat-plate modules, issues such as providing cell illumination introduce additional complexities into the testing procedure. The results indicate that the same general guidelines apply to protecting concentrator modules from hot-spot stressing as apply to flat-plate modules, and recommendations are made on the number of bypass diodes required per given number of series cells per module or source circuit. A method for determining the cell temperature in the laboratory or in the field is discussed.

  17. Two New Hot Spots on Io

    NASA Image and Video Library

    1998-03-26

    The Near-Infrared Mapping Spectrometer (NIMS) on Galileo obtained this image of half of Io's disk in darkness on September 19, 1997. This image, at 5 microns, shows several hot spots on Io, which are volcanic regions of enhanced thermal emission. The area shown is part of the leading hemisphere of Io. Two new hot spots are shown and indicated in the image (New, and Shamshu). Neither of these hot spots were seen by NIMS or the Solid State Imaging Experiment, (SSI) prior to this observation, becoming only recently active. Several other previously known hot spots are labelled in the image. Galileo was at a distance of 342,000 km from Io when this observation was made. http://photojournal.jpl.nasa.gov/catalog/PIA01226

  18. Hot spot formation from shock reflections

    NASA Astrophysics Data System (ADS)

    Menikoff, R.

    2011-04-01

    Heterogeneities sensitize an explosive to shock initiation. This is due to hot-spot formation and the sensitivity of chemical reaction rates to temperature. Here, we describe a numerical experiment aimed at elucidating a mechanism for hot-spot formation that occurs when a shock wave passes over a high-density impurity. The simulation performed is motivated by a physical experiment in which glass beads are added to liquid nitromethane. The impedance mismatch between the beads and the nitromethane results in shock reflections. These, in turn, give rise to transverse waves along the lead shock front. Hot spots arise on local portions of the lead front with a higher shock strength, rather than on the reflected shocks behind the beads. Moreover, the interactions generated by reflected waves from neighboring beads can significantly increase the peak hot-spot temperature when the beads are suitably spaced.

  19. Hot-spot tectonics on Io

    NASA Technical Reports Server (NTRS)

    Mcewen, A. S.

    1985-01-01

    The thesis is that extensional tectonics and low-angle detachment faults probably occur on Io in association with the hot spots. These processes may occur on a much shorter timescale on Ion than on Earth, so that Io could be a natural laboratory for the study of thermotectonics. Furthermore, studies of heat and detachment in crustal extension on Earth and the other terresrial planets (especially Venus and Mars) may provide analogs to processes on Io. The geology of Io is dominated by volcanism and hot spots, most likely the result of tidal heating. Hot spots cover 1 to 2% of Io's surface, radiating at temperatures typically from 200 to 400 K, and occasionally up to 700K. Heat loss from the largest hot spots on Io, such as Loki Patera, is about 300 times the heat loss from Yellowstone, so a tremendous quantity of energy is available for volcanic and tectonic work. Active volcanism on Io results in a resurfacing rate as high as 10 cm per year, yet many structural features are apparent on the surface. Therefore, the tectonics must be highly active.

  20. Tuning temperature and size of hot spots and hot-spot arrays.

    PubMed

    Saïdi, Elika; Babinet, Nicolas; Lalouat, Loïc; Lesueur, Jérôme; Aigouy, Lionel; Volz, Sébastian; Labéguerie-Egéa, Jessica; Mortier, Michel

    2011-01-17

    By using scanning thermal microscopy, it is shown that nanoscale constrictions in metallic microwires deposited on an oxidized silicon substrate can be tuned in terms of temperature and confinement size. High-resolution temperature maps indeed show that submicrometer hot spots and hot-spot arrays are obtained when the SiO(2) layer thickness decreases below 100 nm. When the SiO(2) thickness becomes larger, heat is less confined in the vicinity of the constrictions and laterally spreads all along the microwire. These results are in good agreement with numerical simulations, which provide dependences between silica-layer thickness and nanodot shape and temperature. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  1. The crime prevention value of hot spots policing.

    PubMed

    Braga, Anthony A

    2006-08-01

    This paper reviews the available research evidence on the effectiveness of hot spots policing programs in reducing crime and disorder. The research identified five randomized controlled experiments and four non-equivalent control group quasi-experiments evaluating the effects of hot spots policing interventions on crime. Seven of nine selected evaluations reported noteworthy crime and disorder reductions. Meta-analyses of the randomized experiments revealed statistically significant mean effect sizes favoring hot spots policing interventions in reducing citizen calls for service in treatment places relative to control places. When immediate spatial displacement was measured, it was very limited and unintended crime prevention benefits were associated with the hot spots policing programs. The results of this review suggest that hot spots policing is an effective crime prevention strategy.

  2. Jumping-droplet electronics hot-spot cooling

    DOE PAGES

    Oh, Junho; Birbarah, Patrick; Foulkes, Thomas; ...

    2017-03-20

    Demand for enhanced cooling technologies within various commercial and consumer applications has increased in recent decades due to electronic devices becoming more energy dense. This study demonstrates jumping-droplet based electric-field-enhanced (EFE) condensation as a potential method to achieve active hot spot cooling in electronic devices. To test the viability of EFE condensation, we developed an experimental setup to remove heat via droplet evaporation from single and multiple high power gallium nitride (GaN) transistors acting as local hot spots (4.6 mm x 2.6 mm). An externally powered circuit was developed to direct jumping droplets from a copper oxide (CuO) nanostructured superhydrophobicmore » surface to the transistor hot spots by applying electric fields between the condensing surface and the transistor. Heat transfer measurements were performed in ambient air (22-25°C air temperature, 20-45% relative humidity) to determine the effect of gap spacing (2-4 mm), electric field (50-250 V/cm), and heat flux (demonstrated to 13 W/cm 2). EFE condensation was shown to enhance the heat transfer from the local hot spot by ≈ 200% compared to cooling without jumping and by 20% compared to non-EFE jumping. Dynamic switching of the electric field for a two-GaN system reveals the potential for active cooling of mobile hot spots. The opportunity for further cooling enhancement by the removal of non-condensable gases promises hot spot heat dissipation rates approaching 120 W/cm 2. Finally, this work provides a framework for the development of active jumping droplet based vapor chambers and heat pipes capable of spatial and temporal thermal dissipation control.« less

  3. Jumping-droplet electronics hot-spot cooling

    NASA Astrophysics Data System (ADS)

    Oh, Junho; Birbarah, Patrick; Foulkes, Thomas; Yin, Sabrina L.; Rentauskas, Michelle; Neely, Jason; Pilawa-Podgurski, Robert C. N.; Miljkovic, Nenad

    2017-03-01

    Demand for enhanced cooling technologies within various commercial and consumer applications has increased in recent decades due to electronic devices becoming more energy dense. This study demonstrates jumping-droplet based electric-field-enhanced (EFE) condensation as a potential method to achieve active hot spot cooling in electronic devices. To test the viability of EFE condensation, we developed an experimental setup to remove heat via droplet evaporation from single and multiple high power gallium nitride (GaN) transistors acting as local hot spots (4.6 mm × 2.6 mm). An externally powered circuit was developed to direct jumping droplets from a copper oxide (CuO) nanostructured superhydrophobic surface to the transistor hot spots by applying electric fields between the condensing surface and the transistor. Heat transfer measurements were performed in ambient air (22-25 °C air temperature, 20%-45% relative humidity) to determine the effect of gap spacing (2-4 mm), electric field (50-250 V/cm) and applied heat flux (demonstrated to 13 W/cm2). EFE condensation was shown to enhance the heat transfer from the local hot spot by ≈200% compared to cooling without jumping and by 20% compared to non-EFE jumping. Dynamic switching of the electric field for a two-GaN system reveals the potential for active cooling of mobile hot spots. The opportunity for further cooling enhancement by the removal of non-condensable gases promises hot spot heat dissipation rates approaching 120 W/cm2. This work provides a framework for the development of active jumping droplet based vapor chambers and heat pipes capable of spatial and temporal thermal dissipation control.

  4. Jumping-droplet electronics hot-spot cooling

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Oh, Junho; Birbarah, Patrick; Foulkes, Thomas

    Demand for enhanced cooling technologies within various commercial and consumer applications has increased in recent decades due to electronic devices becoming more energy dense. This study demonstrates jumping-droplet based electric-field-enhanced (EFE) condensation as a potential method to achieve active hot spot cooling in electronic devices. To test the viability of EFE condensation, we developed an experimental setup to remove heat via droplet evaporation from single and multiple high power gallium nitride (GaN) transistors acting as local hot spots (4.6 mm x 2.6 mm). An externally powered circuit was developed to direct jumping droplets from a copper oxide (CuO) nanostructured superhydrophobicmore » surface to the transistor hot spots by applying electric fields between the condensing surface and the transistor. Heat transfer measurements were performed in ambient air (22-25°C air temperature, 20-45% relative humidity) to determine the effect of gap spacing (2-4 mm), electric field (50-250 V/cm), and heat flux (demonstrated to 13 W/cm 2). EFE condensation was shown to enhance the heat transfer from the local hot spot by ≈ 200% compared to cooling without jumping and by 20% compared to non-EFE jumping. Dynamic switching of the electric field for a two-GaN system reveals the potential for active cooling of mobile hot spots. The opportunity for further cooling enhancement by the removal of non-condensable gases promises hot spot heat dissipation rates approaching 120 W/cm 2. Finally, this work provides a framework for the development of active jumping droplet based vapor chambers and heat pipes capable of spatial and temporal thermal dissipation control.« less

  5. Modeling deflagration waves out of hot spots

    NASA Astrophysics Data System (ADS)

    Partom, Yehuda

    2017-01-01

    It is widely accepted that shock initiation and detonation of heterogeneous explosives comes about by a two-step process known as ignition and growth. In the first step a shock sweeping through an explosive cell (control volume) creates hot spots that become ignition sites. In the second step, deflagration waves (or burn waves) propagate out of those hot spots and transform the reactant in the cell into reaction products. The macroscopic (or average) reaction rate of the reactant in the cell depends on the speed of those deflagration waves and on the average distance between neighboring hot spots. Here we simulate the propagation of deflagration waves out of hot spots on the mesoscale in axial symmetry using a 2D hydrocode, to which we add heat conduction and bulk reaction. The propagation speed of the deflagration waves may depend on both pressure and temperature. It depends on pressure for quasistatic loading near ambient temperature, and on temperature at high temperatures resulting from shock loading. From the simulation we obtain deflagration fronts emanating out of the hot spots. For 8 to 13 GPa shocks, the emanating fronts propagate as deflagration waves to consume the explosive between hot spots. For higher shock levels deflagration waves may interact with the sweeping shock to become detonation waves on the mesoscale. From the simulation results we extract average deflagration wave speeds.

  6. An approach for addressing hard-to-detect hot spots.

    PubMed

    Abelquist, Eric W; King, David A; Miller, Laurence F; Viars, James A

    2013-05-01

    The Multi-Agency Radiation Survey and Site Investigation Manual (MARSSIM) survey approach is comprised of systematic random sampling coupled with radiation scanning to assess acceptability of potential hot spots. Hot spot identification for some radionuclides may not be possible due to the very weak gamma or x-ray radiation they emit-these hard-to-detect nuclides are unlikely to be identified by field scans. Similarly, scanning technology is not yet available for chemical contamination. For both hard-to-detect nuclides and chemical contamination, hot spots are only identified via volumetric sampling. The remedial investigation and cleanup of sites under the Comprehensive Environmental Response, Compensation, and Liability Act typically includes the collection of samples over relatively large exposure units, and concentration limits are applied assuming the contamination is more or less uniformly distributed. However, data collected from contaminated sites demonstrate contamination is often highly localized. These highly localized areas, or hot spots, will only be identified if sample densities are high or if the environmental characterization program happens to sample directly from the hot spot footprint. This paper describes a Bayesian approach for addressing hard-to-detect nuclides and chemical hot spots. The approach begins using available data (e.g., as collected using the standard approach) to predict the probability that an unacceptable hot spot is present somewhere in the exposure unit. This Bayesian approach may even be coupled with the graded sampling approach to optimize hot spot characterization. Once the investigator concludes that the presence of hot spots is likely, then the surveyor should use the data quality objectives process to generate an appropriate sample campaign that optimizes the identification of risk-relevant hot spots.

  7. The rise and fall of a human recombination hot spot.

    PubMed

    Jeffreys, Alec J; Neumann, Rita

    2009-05-01

    Human meiotic crossovers mainly cluster into narrow hot spots that profoundly influence patterns of haplotype diversity and that may also affect genome instability and sequence evolution. Hot spots also seem to be ephemeral, but processes of hot-spot activation and their subsequent evolutionary dynamics remain unknown. We now analyze the life cycle of a recombination hot spot. Sperm typing revealed a polymorphic hot spot that was activated in cis by a single base change, providing evidence for a primary sequence determinant necessary, though not sufficient, to activate recombination. This activating mutation occurred roughly 70,000 y ago and has persisted to the present, most likely fortuitously through genetic drift despite its systematic elimination by biased gene conversion. Nonetheless, this self-destructive conversion will eventually lead to hot-spot extinction. These findings define a subclass of highly transient hot spots and highlight the importance of understanding hot-spot turnover and how it influences haplotype diversity.

  8. Nonlinear simulations of Jupiter's 5-micron hot spots

    NASA Technical Reports Server (NTRS)

    Showman, A. P.; Dowling, T. E.

    2000-01-01

    Large-scale nonlinear simulations of Jupiter's 5-micron hot spots produce long-lived coherent structures that cause subsidence in local regions, explaining the low cloudiness and the dryness measured by the Galileo probe inside a hot spot. Like observed hot spots, the simulated coherent structures are equatorially confined, have periodic spacing, propagate west relative to the flow, are generally confined to one hemisphere, and have an anticyclonic gyre on their equatorward side. The southern edge of the simulated hot spots develops vertical shear of up to 70 meters per second in the eastward wind, which can explain the results of the Galileo probe Doppler wind experiment.

  9. Correlates of county-level nonviral sexually transmitted infection hot spots in the US: application of hot spot analysis and spatial logistic regression.

    PubMed

    Chang, Brian A; Pearson, William S; Owusu-Edusei, Kwame

    2017-04-01

    We used a combination of hot spot analysis (HSA) and spatial regression to examine county-level hot spot correlates for the most commonly reported nonviral sexually transmitted infections (STIs) in the 48 contiguous states in the United States (US). We obtained reported county-level total case rates of chlamydia, gonorrhea, and primary and secondary (P&S) syphilis in all counties in the 48 contiguous states from national surveillance data and computed temporally smoothed rates using 2008-2012 data. Covariates were obtained from county-level multiyear (2008-2012) American Community Surveys from the US census. We conducted HSA to identify hot spot counties for all three STIs. We then applied spatial logistic regression with the spatial error model to determine the association between the identified hot spots and the covariates. HSA indicated that ≥84% of hot spots for each STI were in the South. Spatial regression results indicated that, a 10-unit increase in the percentage of Black non-Hispanics was associated with ≈42% (P < 0.01) [≈22% (P < 0.01), for Hispanics] increase in the odds of being a hot spot county for chlamydia and gonorrhea, and ≈27% (P < 0.01) [≈11% (P < 0.01) for Hispanics] for P&S syphilis. Compared with the other regions (West, Midwest, and Northeast), counties in the South were 6.5 (P < 0.01; chlamydia), 9.6 (P < 0.01; gonorrhea), and 4.7 (P < 0.01; P&S syphilis) times more likely to be hot spots. Our study provides important information on hot spot clusters of nonviral STIs in the entire United States, including associations between hot spot counties and sociodemographic factors. Published by Elsevier Inc.

  10. Hot spot detection, segmentation, and identification in PET images

    NASA Astrophysics Data System (ADS)

    Blaffert, Thomas; Meetz, Kirsten

    2006-03-01

    Positron Emission Tomography (PET) images provide functional or metabolic information from areas of high concentration of [18F]fluorodeoxyglucose (FDG) tracer, the "hot spots". These hot spots can be easily detected by the eye, but delineation and size determination required e.g. for diagnosis and staging of cancer is a tedious task that demands for automation. The approach for such an automated hot spot segmentation described in this paper comprises three steps: A region of interest detection by the watershed transform, a heart identification by an evaluation of scan lines, and the final segmentation of hot spot areas by a local threshold. The region of interest detection is the essential step, since it localizes the hot spot identification and the final segmentation. The heart identification is an example of how to differentiate between hot spots. Finally, we demonstrate the combination of PET and CT data. Our method is applicable to other techniques like SPECT.

  11. Two New Hot Spots on Io

    NASA Technical Reports Server (NTRS)

    1997-01-01

    The Near-Infrared Mapping Spectrometer (NIMS) on Galileo obtained this image of half of Io's disk in darkness on September 19, 1997. This image, at 5 microns, shows several hot spots on Io, which are volcanic regions of enhanced thermal emission. The area shown is part of the leading hemisphere of Io.

    Two new hot spots are shown and indicated in the image (New, and Shamshu). Neither of these hot spots were seen by NIMS or the Solid State Imaging Experiment, (SSI) prior to this observation, becoming only recently active. Several other previously known hot spots are labelled in the image. Galileo was at a distance of 342,000 km from Io when this observation was made.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov.

  12. New 40Ar/39Ar age progression for the Louisville hot spot trail and implications for inter-hot spot motion

    NASA Astrophysics Data System (ADS)

    Koppers, Anthony A. P.; Gowen, Molly D.; Colwell, Lauren E.; Gee, Jeffrey S.; Lonsdale, Peter F.; Mahoney, John J.; Duncan, Robert A.

    2011-12-01

    In this study we present 42 new 40Ar/39Ar incremental heating age determinations that contribute to an updated age progression for the Louisville seamount trail. Louisville is the South Pacific counterpart to the Hawaiian-Emperor seamount trail, both trails representing intraplate volcanism over the same time interval (˜80 Ma to present) and being examples of primary hot spot lineaments. Our data provide evidence for an age-progressive trend from 71 to 21 Ma. Assuming fixed hot spots, this makes possible a direct comparison to the Hawaiian-Emperor age progression and the most recent absolute plate motion (APM) model (WK08G) of Wessel and Kroenke (2008). We observe that for the Louisville seamount trail the measured ages are systematically older relative to both the WK08G model predictions and Hawaiian seamount ages, with offsets ranging up to 6 Myr. Taking into account the uncertainty about the duration of eruption and magmatic succession at individual Louisville volcanoes, these age offsets should be considered minimum estimates, as our sampling probably tended to recover the youngest lava flows. These large deviations point to either a contribution of inter-hot spot motion between the Louisville and Hawaiian hot spots or to a more easterly location of the Louisville hot spot than the one inferred in the WK08G model. Both scenarios are investigated in this paper, whereby the more eastern hot spot location (52.0°S, 134.5°W versus 52.4°S, 137.2°W) reduces the average age offset, but still results in a relatively large maximum offset of 3.7 Myr. When comparing the new ages to the APM models (S04P, S04G) by Steinberger et al. (2004) that attempt to compensate for the motion of hot spots in the Pacific (Hawaii) or globally (Hawaii, Louisville, Reunion and Walvis), the measured and predicted ages are more in agreement, showing only a maximum offset of 2.3 Myr with respect to the S04G model. At face value these more advanced APM models, which consider both plate and

  13. Thermally-Driven Mantle Plumes Reconcile Hot-spot Observations

    NASA Astrophysics Data System (ADS)

    Davies, D.; Davies, J.

    2008-12-01

    Hot-spots are anomalous regions of magmatism that cannot be directly associated with plate tectonic processes (e.g. Morgan, 1972). They are widely regarded as the surface expression of upwelling mantle plumes. Hot-spots exhibit variable life-spans, magmatic productivity and fixity (e.g. Ito and van Keken, 2007). This suggests that a wide-range of upwelling structures coexist within Earth's mantle, a view supported by geochemical and seismic evidence, but, thus far, not reproduced by numerical models. Here, results from a new, global, 3-D spherical, mantle convection model are presented, which better reconcile hot-spot observations, the key modification from previous models being increased convective vigor. Model upwellings show broad-ranging dynamics; some drift slowly, while others are more mobile, displaying variable life-spans, intensities and migration velocities. Such behavior is consistent with hot-spot observations, indicating that the mantle must be simulated at the correct vigor and in the appropriate geometry to reproduce Earth-like dynamics. Thermally-driven mantle plumes can explain the principal features of hot-spot volcanism on Earth.

  14. Evaluation of a risk-based environmental hot spot delineation algorithm.

    PubMed

    Sinha, Parikhit; Lambert, Michael B; Schew, William A

    2007-10-22

    Following remedial investigations of hazardous waste sites, remedial strategies may be developed that target the removal of "hot spots," localized areas of elevated contamination. For a given exposure area, a hot spot may be defined as a sub-area that causes risks for the whole exposure area to be unacceptable. The converse of this statement may also apply: when a hot spot is removed from within an exposure area, risks for the exposure area may drop below unacceptable thresholds. The latter is the motivation for a risk-based approach to hot spot delineation, which was evaluated using Monte Carlo simulation. Random samples taken from a virtual site ("true site") were used to create an interpolated site. The latter was gridded and concentrations from the center of each grid box were used to calculate 95% upper confidence limits on the mean site contaminant concentration and corresponding hazard quotients for a potential receptor. Grid cells with the highest concentrations were removed and hazard quotients were recalculated until the site hazard quotient dropped below the threshold of 1. The grid cells removed in this way define the spatial extent of the hot spot. For each of the 100,000 Monte Carlo iterations, the delineated hot spot was compared to the hot spot in the "true site." On average, the algorithm was able to delineate hot spots that were collocated with and equal to or greater in size than the "true hot spot." When delineated hot spots were mapped onto the "true site," setting contaminant concentrations in the mapped area to zero, the hazard quotients for these "remediated true sites" were on average within 5% of the acceptable threshold of 1.

  15. Photovoltaic module hot spot durability design and test methods

    NASA Technical Reports Server (NTRS)

    Arnett, J. C.; Gonzalez, C. C.

    1981-01-01

    As part of the Jet Propulsion Laboratory's Low-Cost Solar Array Project, the susceptibility of fat-plate modules to hot-spot problems is investigated. Hot-spot problems arise in modules when the cells become back-biased and operate in the negative-voltage quadrant, as a result of short-circuit current mismatch, cell cracking or shadowing. The details of a qualification test for determining the capability of modules of surviving field hot-spot problems and typical results of this test are presented. In addition, recommended circuit-design techniques for improving the module and array reliability with respect to hot-spot problems are presented.

  16. Dynamic programming-based hot spot identification approach for pedestrian crashes.

    PubMed

    Medury, Aditya; Grembek, Offer

    2016-08-01

    Network screening techniques are widely used by state agencies to identify locations with high collision concentration, also referred to as hot spots. However, most of the research in this regard has focused on identifying highway segments that are of concern to automobile collisions. In comparison, pedestrian hot spot detection has typically focused on analyzing pedestrian crashes in specific locations, such as at/near intersections, mid-blocks, and/or other crossings, as opposed to long stretches of roadway. In this context, the efficiency of the some of the widely used network screening methods has not been tested. Hence, in order to address this issue, a dynamic programming-based hot spot identification approach is proposed which provides efficient hot spot definitions for pedestrian crashes. The proposed approach is compared with the sliding window method and an intersection buffer-based approach. The results reveal that the dynamic programming method generates more hot spots with a higher number of crashes, while providing small hot spot segment lengths. In comparison, the sliding window method is shown to suffer from shortcomings due to a first-come-first-serve approach vis-à-vis hot spot identification and a fixed hot spot window length assumption. Copyright © 2016 Elsevier Ltd. All rights reserved.

  17. Meteorology of Jupiter's Equatorial Hot Spots and Plumes from Cassini

    NASA Technical Reports Server (NTRS)

    Choi, David Sanghun; Showman, Adam P.; Vasavada, Ashwin R.; Simon-Miller, Amy A.

    2013-01-01

    We present an updated analysis of Jupiter's equatorial meteorology from Cassini observations. For two months preceding the spacecraft's closest approach, the Imaging Science Subsystem (ISS) onboard regularly imaged the atmosphere. We created time-lapse movies from this period in order to analyze the dynamics of equatorial hot spots and their interactions with adjacent latitudes. Hot spots are relatively cloud-free regions that emit strongly at 5 lm; improved knowledge of these features is crucial for fully understanding Galileo probe measurements taken during its descent through one. Hot spots are quasistable, rectangular dark areas on visible-wavelength images, with defined eastern edges that sharply contrast with surrounding clouds, but diffuse western edges serving as nebulous boundaries with adjacent equatorial plumes. Hot spots exhibit significant variations in size and shape over timescales of days and weeks. Some of these changes correspond with passing vortex systems from adjacent latitudes interacting with hot spots. Strong anticyclonic gyres present to the south and southeast of the dark areas appear to circulate into hot spots. Impressive, bright white plumes occupy spaces in between hot spots. Compact cirrus-like 'scooter' clouds flow rapidly through the plumes before disappearing within the dark areas. These clouds travel at 150-200 m/s, much faster than the 100 m/s hot spot and plume drift speed. This raises the possibility that the scooter clouds may be more illustrative of the actual jet stream speed at these latitudes. Most previously published zonal wind profiles represent the drift speed of the hot spots at their latitude from pattern matching of the entire longitudinal image strip. If a downward branch of an equatorially-trapped Rossby wave controls the overall appearance of hot spots, however, the westward phase velocity of the wave leads to underestimates of the true jet stream speed.

  18. KFC Server: interactive forecasting of protein interaction hot spots.

    PubMed

    Darnell, Steven J; LeGault, Laura; Mitchell, Julie C

    2008-07-01

    The KFC Server is a web-based implementation of the KFC (Knowledge-based FADE and Contacts) model-a machine learning approach for the prediction of binding hot spots, or the subset of residues that account for most of a protein interface's; binding free energy. The server facilitates the automated analysis of a user submitted protein-protein or protein-DNA interface and the visualization of its hot spot predictions. For each residue in the interface, the KFC Server characterizes its local structural environment, compares that environment to the environments of experimentally determined hot spots and predicts if the interface residue is a hot spot. After the computational analysis, the user can visualize the results using an interactive job viewer able to quickly highlight predicted hot spots and surrounding structural features within the protein structure. The KFC Server is accessible at http://kfc.mitchell-lab.org.

  19. KFC Server: interactive forecasting of protein interaction hot spots

    PubMed Central

    Darnell, Steven J.; LeGault, Laura; Mitchell, Julie C.

    2008-01-01

    The KFC Server is a web-based implementation of the KFC (Knowledge-based FADE and Contacts) model—a machine learning approach for the prediction of binding hot spots, or the subset of residues that account for most of a protein interface's; binding free energy. The server facilitates the automated analysis of a user submitted protein–protein or protein–DNA interface and the visualization of its hot spot predictions. For each residue in the interface, the KFC Server characterizes its local structural environment, compares that environment to the environments of experimentally determined hot spots and predicts if the interface residue is a hot spot. After the computational analysis, the user can visualize the results using an interactive job viewer able to quickly highlight predicted hot spots and surrounding structural features within the protein structure. The KFC Server is accessible at http://kfc.mitchell-lab.org. PMID:18539611

  20. Druggable orthosteric and allosteric hot spots to target protein-protein interactions.

    PubMed

    Ma, Buyong; Nussinov, Ruth

    2014-01-01

    Drug designing targeting protein-protein interactions is challenging. Because structural elucidation and computational analysis have revealed the importance of hot spot residues in stabilizing these interactions, there have been on-going efforts to develop drugs which bind the hot spots and out-compete the native protein partners. The question arises as to what are the key 'druggable' properties of hot spots in protein-protein interactions and whether these mimic the general hot spot definition. Identification of orthosteric (at the protein- protein interaction site) and allosteric (elsewhere) druggable hot spots is expected to help in discovering compounds that can more effectively modulate protein-protein interactions. For example, are there any other significant features beyond their location in pockets in the interface? The interactions of protein-protein hot spots are coupled with conformational dynamics of protein complexes. Currently increasing efforts focus on the allosteric drug discovery. Allosteric drugs bind away from the native binding site and can modulate the native interactions. We propose that identification of allosteric hot spots could similarly help in more effective allosteric drug discovery. While detection of allosteric hot spots is challenging, targeting drugs to these residues has the potential of greatly increasing the hot spot and protein druggability.

  1. Methodology and software to detect viral integration site hot-spots

    PubMed Central

    2011-01-01

    Background Modern gene therapy methods have limited control over where a therapeutic viral vector inserts into the host genome. Vector integration can activate local gene expression, which can cause cancer if the vector inserts near an oncogene. Viral integration hot-spots or 'common insertion sites' (CIS) are scrutinized to evaluate and predict patient safety. CIS are typically defined by a minimum density of insertions (such as 2-4 within a 30-100 kb region), which unfortunately depends on the total number of observed VIS. This is problematic for comparing hot-spot distributions across data sets and patients, where the VIS numbers may vary. Results We develop two new methods for defining hot-spots that are relatively independent of data set size. Both methods operate on distributions of VIS across consecutive 1 Mb 'bins' of the genome. The first method 'z-threshold' tallies the number of VIS per bin, converts these counts to z-scores, and applies a threshold to define high density bins. The second method 'BCP' applies a Bayesian change-point model to the z-scores to define hot-spots. The novel hot-spot methods are compared with a conventional CIS method using simulated data sets and data sets from five published human studies, including the X-linked ALD (adrenoleukodystrophy), CGD (chronic granulomatous disease) and SCID-X1 (X-linked severe combined immunodeficiency) trials. The BCP analysis of the human X-linked ALD data for two patients separately (774 and 1627 VIS) and combined (2401 VIS) resulted in 5-6 hot-spots covering 0.17-0.251% of the genome and containing 5.56-7.74% of the total VIS. In comparison, the CIS analysis resulted in 12-110 hot-spots covering 0.018-0.246% of the genome and containing 5.81-22.7% of the VIS, corresponding to a greater number of hot-spots as the data set size increased. Our hot-spot methods enable one to evaluate the extent of VIS clustering, and formally compare data sets in terms of hot-spot overlap. Finally, we show that the

  2. Hot-spot durability testing of amorphous cells and modules

    NASA Technical Reports Server (NTRS)

    Gonzalez, Charles; Jetter, Elizabeth

    1985-01-01

    This paper discusses the results of a study to determine the hot-spot susceptibility of amorphous-silicon (a-Si) cells and modules, and to provide guidelines for reducing that susceptibility. Amorphous-Si cells are shown to have hot-spot susceptibility levels similar to crystalline-silicon (C-Si) cells. This premise leads to the fact that the same general guidelines must apply to protecting a-Si cells from hot-spot stressing that apply to C-Si cells. Recommendations are made on ways of reducing a-Si module hot-spot susceptibility including the traditional method of using bypass diodes and a new method unique to thin-film cells, limiting the string current by limiting cell area.

  3. A measurement concept for hot-spot BRDFs from space

    NASA Technical Reports Server (NTRS)

    Gerstl, S.A.W.

    1996-01-01

    Several concepts for canopy hot-spot measurements from space have been investigated. The most promising involves active illumination and bistatic detection that would allow hot-spot angular distribution (BRDF) measurements from space in a search-light mode. The concept includes a pointable illumination source, such as a laser operating at an atmospheric window wavelength, coupled with a number of high spatial-resolution detectors that are clustered around the illumination source in space, receiving photons nearly coaxial with the reto-reflection direction. Microwave control and command among the satellite cluster would allow orienting the direction of the laser beam as well as the focusing detectors simultaneously so that the coupled system can function like a search light with almost unlimited pointing capabilities. The concept is called the Hot-Spot Search-Light (HSSL) satellite. A nominal satellite altitude of 600 km will allow hot-spot BRDF measurements out to about 18 degrees phase angle. The distributed are taking radiometric measurements of the intensity wings of the hot-spot angular distribution without the need for complex imaging detectors. The system can be operated at night for increased signal-to-noise ratio. This way the hot-spot angular signatures can be quantified and parameterized in sufficient detail to extract the biophysical information content of plant architectures.

  4. The hot spot of vegetation canopies

    NASA Technical Reports Server (NTRS)

    Myneni, Ranga B.; Kanemasu, Edward T.

    1988-01-01

    A conventional radiometer is used to identify the hot spot (the peak in reflected radiation in the retrosolar direction) of vegetation. A multiwavelength-band radiometer collected radiances on fully grown dense wheat and maize canopies on several clear sunny days. It is noted that the hot spot is difficult to detect in the near IR wavelengths because the shadows are much darker. In general, the retrosolar brightness is found to be higher for smaller sun polar angles than for larger angles.

  5. ESA uncovers Geminga's `hot spot'

    NASA Astrophysics Data System (ADS)

    2004-07-01

    16 July 2004 Astronomers using ESA’s X-ray observatory XMM-Newton have detected a small, bright ‘hot spot’ on the surface of the neutron star called Geminga, 500 light-years away. The hot spot is the size of a football field and is caused by the same mechanism producing Geminga’s X-ray tails. This discovery identifies the missing link between the X-ray and gamma-ray emission from Geminga. hi-res Size hi-res: 1284 kb Credits: ESA, P. Caraveo (IASF, Milan) Geminga's hot spot This figure shows the effects of charged particles accelerated in the magnetosphere of Geminga. Panel (a) shows an image taken with the EPIC instrument on board the XMM-Newton observatory. The bright tails, made of particles kicked out by Geminga’s strong magnetic field, trail the neutron star as it moves about in space. Panel (b) shows how electrically charged particles interact with Geminga’s magnetic field. For example, if electrons (blue) are kicked out by the star, positrons (in red) hit the star’s magnetic poles like in an ‘own goal’. Panel (c) illustrates the size of Geminga’s magnetic field (blue) compared to that of the star itself at the centre (purple). The magnetic field is tilted with respect to Geminga’s rotation axis (red). Panel (d) shows the magnetic poles of Geminga, where charged particles hit the surface of the star, creating a two-million degrees hot spot, a region much hotter than the surroundings. As the star spins on its rotation axis, the hot spot comes into view and then disappears, causing the periodic colour change seen by XMM-Newton. An animated version of the entire sequence can be found at: Click here for animated GIF [low resolution, animated GIF, 5536 KB] Click here for AVI [high resolution, AVI with DIVX compression, 19128 KB] hi-res Size hi-res: 371 kb Credits: ESA, P. Caraveo (IASF, Milan) Geminga's hot spot, panel (a) Panel (a) shows an image taken with the EPIC instrument on board the XMM-Newton observatory. The bright tails, made of

  6. Hot spot-based design of small-molecule inhibitors for protein-protein interactions.

    PubMed

    Guo, Wenxing; Wisniewski, John A; Ji, Haitao

    2014-06-01

    Protein-protein interactions (PPIs) are important targets for the development of chemical probes and therapeutic agents. From the initial discovery of the existence of hot spots at PPI interfaces, it has been proposed that hot spots might provide the key for developing small-molecule PPI inhibitors. However, there has been no review on the ways in which the knowledge of hot spots can be used to achieve inhibitor design, nor critical examination of successful examples. This Digest discusses the characteristics of hot spots and the identification of druggable hot spot pockets. An analysis of four examples of hot spot-based design reveals the importance of this strategy in discovering potent and selective PPI inhibitors. A general procedure for hot spot-based design of PPI inhibitors is outlined. Copyright © 2014 Elsevier Ltd. All rights reserved.

  7. Thermal Infrared Hot Spot and Dependence on Canopy Geometry

    NASA Technical Reports Server (NTRS)

    Smith, James A.; Ballard, Jerrell R., Jr.; Smith, David E. (Technical Monitor)

    2001-01-01

    We perform theoretical calculations of the canopy thermal infrared (TIR) hot spot using a first principles 3-D model described earlier. Various theoretical canopies of varying leaf size and for differing canopy height are used to illustrate the magnitude of the TIR effect. Our results are similar to predicted behavior in the reflective hot spot as a function of canopy geometry and comparable to TIR measurements from the literature and our own simple ground experiments. We apply the MODTRAN atmospheric code to estimate the at-sensor variation in brightness temperature with view direction in the solar principal plane. For simple homogeneous canopies, we predict canopy thermal infrared hot spot variations of 2 degrees C at the surface with respect to nadir viewing. Dependence on leaf size is weak as long as the ratio of leaf size to canopy height is maintained. However, the angular width of the hot spot increases as the ratio of leaf diameter to canopy height increases. Atmospheric effects minimize but do not eliminate the TIR hot spot at satellite altitudes.

  8. Hot-spot mix in ignition-scale implosions on the NIF [Hot-spot mix in ignition-scale implosions on the National Ignition Facility (NIF)

    DOE PAGES

    Regan, S. P.; Epstein, R.; Hammel, B. A.; ...

    2012-03-30

    Ignition of an inertial confinement fusion (ICF) target depends on the formation of a central hot spot with sufficient temperature and areal density. Radiative and conductive losses from the hot spot can be enhanced by hydrodynamic instabilities. The concentric spherical layers of current National Ignition Facility (NIF) ignition targets consist of a plastic ablator surrounding 2 a thin shell of cryogenic thermonuclear fuel (i.e., hydrogen isotopes), with fuel vapor filling the interior volume. The Rev. 5 ablator is doped with Ge to minimize preheat of the ablator closest to the DT ice caused by Au M-band emission from the hohlraummore » x-ray drive. Richtmyer–Meshkov and Rayleigh–Taylor hydrodynamic instabilities seeded by high-mode (50 < t < 200) ablator-surface perturbations can cause Ge-doped ablator to mix into the interior of the shell at the end of the acceleration phase. As the shell decelerates, it compresses the fuel vapor, forming a hot spot. K-shell line emission from the ionized Ge that has penetrated into the hot spot provides an experimental signature of hot-spot mix. The Ge emission from tritium–hydrogen–deuterium (THD) and DT cryogenic targets and gas-filled plastic shell capsules, which replace the THD layer with a massequivalent CH layer, was examined. The inferred amount of hot-spot mix mass, estimated from the Ge K-shell line brightness using a detailed atomic physics code, is typically below the 75 ng allowance for hot-spot mix. Furthermore, predictions of a simple mix model, based on linear growth of the measured surface-mass modulations, are consistent with the experimental results.« less

  9. Hot-spot mix in ignition-scale implosions on the NIF [Hot-spot mix in ignition-scale implosions on the National Ignition Facility (NIF)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Regan, S. P.; Epstein, R.; Hammel, B. A.

    Ignition of an inertial confinement fusion (ICF) target depends on the formation of a central hot spot with sufficient temperature and areal density. Radiative and conductive losses from the hot spot can be enhanced by hydrodynamic instabilities. The concentric spherical layers of current National Ignition Facility (NIF) ignition targets consist of a plastic ablator surrounding 2 a thin shell of cryogenic thermonuclear fuel (i.e., hydrogen isotopes), with fuel vapor filling the interior volume. The Rev. 5 ablator is doped with Ge to minimize preheat of the ablator closest to the DT ice caused by Au M-band emission from the hohlraummore » x-ray drive. Richtmyer–Meshkov and Rayleigh–Taylor hydrodynamic instabilities seeded by high-mode (50 < t < 200) ablator-surface perturbations can cause Ge-doped ablator to mix into the interior of the shell at the end of the acceleration phase. As the shell decelerates, it compresses the fuel vapor, forming a hot spot. K-shell line emission from the ionized Ge that has penetrated into the hot spot provides an experimental signature of hot-spot mix. The Ge emission from tritium–hydrogen–deuterium (THD) and DT cryogenic targets and gas-filled plastic shell capsules, which replace the THD layer with a massequivalent CH layer, was examined. The inferred amount of hot-spot mix mass, estimated from the Ge K-shell line brightness using a detailed atomic physics code, is typically below the 75 ng allowance for hot-spot mix. Furthermore, predictions of a simple mix model, based on linear growth of the measured surface-mass modulations, are consistent with the experimental results.« less

  10. Live-Cell Pyrophosphate Imaging by in Situ Hot-Spot Generation.

    PubMed

    Li, Mingmin; Li, Jin; Di, Huixia; Liu, Huiqiao; Liu, Dingbin

    2017-03-21

    Controlling the electromagnetic hot-spot generation is essential for surface-enhanced Raman scattering (SERS) assays. Current hot-spot-based SERS assays have been extensively studied in solutions or on substrates. However, probing biospecies by controlling the hot-spot assembly in living systems has not been demonstrated thus far. Herein, we report a background-free SERS probe for imaging pyrophosphate (PPi), a biochemically significant anion, in living cells. Intracellular PPi is able to induce the nanoparticle dimerization, thus creating an intense electromagnetic hot spot and dramatically enhancing the signal of the Raman reporters residing in the hot spot. More impressively, the reporter we used in this study provides a strong and sharp single peak in the cellular Raman-silent region (1800-2800 cm -1 ), thus eliminating the possible background interference. This strategy could be readily extended to detect other biomarkers by only replacing the recognition ligands.

  11. Image-guided brachytherapy for cervical cancer: analysis of D2 cc hot spot in three-dimensional and anatomic factors affecting D2 cc hot spot in organs at risk.

    PubMed

    Kim, Robert Y; Dragovic, Alek F; Whitley, Alexander C; Shen, Sui

    2014-01-01

    To analyze the D2 cc hot spot in three-dimensional CT and anatomic factors affecting the D2 cc hot spot in organs at risk (OARs). Thirty-one patients underwent pelvic CT scan after insertion of the applicator. High-dose-rate treatment planning was performed with standard loading patterns. The D2 cc structures in OARs were generated in three dimensional if the total equivalent dose in 2 Gy exceeded our defined dose limits (hot spot). The location of D2 cc hot spot was defined as the center of the largest D2 cc fragment. The relationship between the hot spot and the applicator position was reported in Digital Imaging and Communication in Medicine coordinates. The location of sigmoid, small bowel, and bladder D2 cc hot spots was around the endocervix: The mean location of sigmoid hot spot for lateral view was 1.6 cm posteriorly and 2.3 cm superiorly (Y, 1.6 and Z, 2.3), small bowel was 1.6 cm anteriorly and 2.7 cm superiorly (Y, -1.6 and Z, 2.7). The mean location of bladder hot spot was 1.6 cm anteriorly and 1.6 cm superiorly (Y, -1.6 and Z, 1.6). These hot spots were near the plane of Point A (X, 2.0 or -2.0; Y, 0; and Z, 2.0). The mean location of rectal hot spot was 1.6 cm posteriorly and 1.9 cm inferiorly (Y, 1.6 and Z, -1.9). D2 cc hot spot was affected by uterine wall thickness, uterine tandem position, fibroids, bladder fullness, bowel gas, and vaginal packing. Because of the location of the D2 cc hot spots, larger tumors present a challenge for adequate tumor coverage with a conventional brachytherapy applicator without an interstitial implant. Additionally, anatomic factors were identified which affect the D2 cc hot spot in OARs. Copyright © 2014 American Brachytherapy Society. Published by Elsevier Inc. All rights reserved.

  12. Hot Spot Detection System Using Landsat 8/OLI Data

    NASA Astrophysics Data System (ADS)

    Kato, S.; Nakamura, R.; Oda, A.; Iijima, A.; Kouyama, T.; Iwata, T.

    2015-12-01

    We developed a simple algorithm and a Web-based visualizing system to detect hot spots using Landsat 8 OLI multispectral data as one of the applications of the real-time processing of Landsat 8 data. An empirical equation and radiometric and reflective thresholds were derived to detect hot spots using the OLI data at band 5 (0.865 μm) and band 7 (2.200 μm) based on the increase in spectral radiance at shortwave infrared (SWIR) region due to the emission from objects with high surface temperature. We surveyed typical patterns of surface spectra using the ASTER spectral library to delineate a threshold to distinguish hot spots from background surfaces. To adjust the empirical coefficients of our detection algorithm, we visually inspected the detected hot spots using 6593 Landsat 8 scenes, which cover eastern part of East Asia, taken from January 1, 2014 to December 31, 2014, displayed on a dedicated Web GIS system. Eventually we determined threshold equations which can theoretically detect hot spots at temperatures above 230 °C over isothermal pixels and hot spots as small as 1 m2 at temperatures of 1000 °C as the lowest temperature and the smallest subpixel coverage, respectively, for daytime scenes. The algorithm detected hot spots including wildfires, volcanos, open burnings and factories. 30-m spatial resolution of Landsat 8 enabled to detect wild fires and open burnings accompanied by clearer shapes of fire front lines than MODIS and VIIRS fire products. Although the 16-day revisit cycle of Landsat 8 is too long to effectively find unexpected wildfire or outbreak of eruption, the revisit cycle is enough to monitor temporally stable heat sources, such as continually erupting volcanos and factories. False detection was found over building rooftops, which have relatively smooth surfaces at longer wavelengths, when specular reflection occurred at the satellite overpass.

  13. Inhibition of turbulence in inertial-confinement-fusion hot spots by viscous dissipation.

    PubMed

    Weber, C R; Clark, D S; Cook, A W; Busby, L E; Robey, H F

    2014-05-01

    Achieving ignition in inertial confinement fusion (ICF) requires the formation of a high-temperature (>10 keV) central hot spot. Turbulence has been suggested as a mechanism for degrading the hot-spot conditions by altering transport properties, introducing colder, mixed material, or reducing the conversion of radially directed kinetic energy to hot-spot heating. We show, however, that the hot spot is very viscous, and the assumption of turbulent conditions in the hot spot is incorrect. This work presents the first high-resolution, three-dimensional simulations of National Ignition Facility (NIF) implosion experiments using detailed knowledge of implosion dynamics and instability seeds and including an accurate model of physical viscosity. We find that when viscous effects are neglected, the hot spot can exhibit a turbulent kinetic energy cascade. Viscous effects, however, are significant and strongly damp small-scale velocity structures, with a hot-spot Reynolds number in the range of only 10-100.

  14. Inhibition of turbulence in inertial-confinement-fusion hot spots by viscous dissipation

    NASA Astrophysics Data System (ADS)

    Weber, C. R.; Clark, D. S.; Cook, A. W.; Busby, L. E.; Robey, H. F.

    2014-05-01

    Achieving ignition in inertial confinement fusion (ICF) requires the formation of a high-temperature (>10 keV) central hot spot. Turbulence has been suggested as a mechanism for degrading the hot-spot conditions by altering transport properties, introducing colder, mixed material, or reducing the conversion of radially directed kinetic energy to hot-spot heating. We show, however, that the hot spot is very viscous, and the assumption of turbulent conditions in the hot spot is incorrect. This work presents the first high-resolution, three-dimensional simulations of National Ignition Facility (NIF) implosion experiments using detailed knowledge of implosion dynamics and instability seeds and including an accurate model of physical viscosity. We find that when viscous effects are neglected, the hot spot can exhibit a turbulent kinetic energy cascade. Viscous effects, however, are significant and strongly damp small-scale velocity structures, with a hot-spot Reynolds number in the range of only 10--100.

  15. Kilauea volcano: the degassing of a hot spot

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gerlach, T.M.

    1986-03-01

    Hot spots such as Kilauea volcano can degas by a one-stage eruptive process or a two-stage process involving eruptive and noneruptive degassing. One stage degassing occurs during sustained summit eruptions and causes a direct environmental impact. Although generally less efficient than the one-stage degassing process, two stage degassing can cause 1 to 2 orders of magnitude greater impact in just a few hours during flank eruptions. Hot spot volcanos with resupplied crustal magma chambers may be capable of maintaining an equivalent impact from CO/sub 2/ and S outgassing during both eruptive and noneruptive periods. On average, a hot spot volcanomore » such as Kilauea is a minor polluter compared to man.« less

  16. Vortices Bump into a Hot Spot in Jupiter Atmosphere

    NASA Image and Video Library

    2013-03-14

    In this series of images from NASA Cassini spacecraft, a dark, rectangular hot spot interacts with a line of vortices that approaches from on the upper-right side. The interaction distorts the shape of the hot spot, leaving it diminished.

  17. Hot-spot mix in ignition-scale inertial confinement fusion targets.

    PubMed

    Regan, S P; Epstein, R; Hammel, B A; Suter, L J; Scott, H A; Barrios, M A; Bradley, D K; Callahan, D A; Cerjan, C; Collins, G W; Dixit, S N; Döppner, T; Edwards, M J; Farley, D R; Fournier, K B; Glenn, S; Glenzer, S H; Golovkin, I E; Haan, S W; Hamza, A; Hicks, D G; Izumi, N; Jones, O S; Kilkenny, J D; Kline, J L; Kyrala, G A; Landen, O L; Ma, T; MacFarlane, J J; MacKinnon, A J; Mancini, R C; McCrory, R L; Meezan, N B; Meyerhofer, D D; Nikroo, A; Park, H-S; Ralph, J; Remington, B A; Sangster, T C; Smalyuk, V A; Springer, P T; Town, R P J

    2013-07-26

    Mixing of plastic ablator material, doped with Cu and Ge dopants, deep into the hot spot of ignition-scale inertial confinement fusion implosions by hydrodynamic instabilities is diagnosed with x-ray spectroscopy on the National Ignition Facility. The amount of hot-spot mix mass is determined from the absolute brightness of the emergent Cu and Ge K-shell emission. The Cu and Ge dopants placed at different radial locations in the plastic ablator show the ablation-front hydrodynamic instability is primarily responsible for hot-spot mix. Low neutron yields and hot-spot mix mass between 34(-13,+50)  ng and 4000(-2970,+17 160)  ng are observed.

  18. Hot-spot mix in ignition-scale inertial confinement fusion targets

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Regan, S. P.; Epstein, R.; Hammel, B. A.

    Mixing of plastic ablator material, doped with Cu and Ge dopants, deep into the hot spot of ignition-scale inertial confinement fusion implosions by hydrodynamic instabilities is diagnosed with x-ray spectroscopy on the National Ignition Facility. The amount of hot-spot mix mass is determined from the absolute brightness of the emergent Cu and Ge K-shell emission. The Cu and Ge dopants placed at different radial locations in the plastic ablator show the ablation-front hydrodynamic instability is primarily responsible for hot-spot mix. As a result, low neutron yields and hot-spot mix mass between 34(–13,+50) ng and 4000(–2970,+17 160) ng are observed.

  19. Hot-spot mix in ignition-scale inertial confinement fusion targets

    DOE PAGES

    Regan, S. P.; Epstein, R.; Hammel, B. A.; ...

    2013-07-22

    Mixing of plastic ablator material, doped with Cu and Ge dopants, deep into the hot spot of ignition-scale inertial confinement fusion implosions by hydrodynamic instabilities is diagnosed with x-ray spectroscopy on the National Ignition Facility. The amount of hot-spot mix mass is determined from the absolute brightness of the emergent Cu and Ge K-shell emission. The Cu and Ge dopants placed at different radial locations in the plastic ablator show the ablation-front hydrodynamic instability is primarily responsible for hot-spot mix. As a result, low neutron yields and hot-spot mix mass between 34(–13,+50) ng and 4000(–2970,+17 160) ng are observed.

  20. The evolutionary turnover of recombination hot spots contributes to speciation in mice

    PubMed Central

    Smagulova, Fatima; Brick, Kevin; Pu, Yongmei; Camerini-Otero, R. Daniel; Petukhova, Galina V.

    2016-01-01

    Meiotic recombination is required for the segregation of homologous chromosomes and is essential for fertility. In most mammals, the DNA double-strand breaks (DSBs) that initiate meiotic recombination are directed to a subset of genomic loci (hot spots) by sequence-specific binding of the PRDM9 protein. Rapid evolution of the DNA-binding specificity of PRDM9 and gradual erosion of PRDM9-binding sites by gene conversion will alter the recombination landscape over time. To better understand the evolutionary turnover of recombination hot spots and its consequences, we mapped DSB hot spots in four major subspecies of Mus musculus with different Prdm9 alleles and in their F1 hybrids. We found that hot spot erosion governs the preferential usage of some Prdm9 alleles over others in hybrid mice and increases sequence diversity specifically at hot spots that become active in the hybrids. As crossovers are disfavored at such hot spots, we propose that sequence divergence generated by hot spot turnover may create an impediment for recombination in hybrids, potentially leading to reduced fertility and, eventually, speciation. PMID:26833728

  1. Coulomb explosion of the hot spot of micropinches

    NASA Astrophysics Data System (ADS)

    Oreshkin, V. I.; Oreshkin, E. V.

    2017-01-01

    It has been shown that the generation of hard X-ray radiation, electron beam, and high energy ions that have been detected in experiments on compressing pinches can be related to the Coulomb explosion of a micropinch hot spot, which is formed due to the outflow of the material. In the outflow process, the plasma temperature in the hot spot increases and conditions appear for the transition of electrons to the regime of continuous acceleration. The exit of runaway electrons from the hot spot region leads to the creation of a positive bulk charge, then to a Coulomb explosion. Conditions under which electrons pass to the continuous acceleration regime have been determined and estimates of the ion kinetic energy upon a Coulomb explosion have been obtained.

  2. Gluonic hot spots and spatial correlations inside the proton

    NASA Astrophysics Data System (ADS)

    Albacete, Javier L.; Petersen, Hannah; Soto-Ontoso, Alba

    2017-11-01

    In this work, largely based on [J. L. Albacete, A. Soto-Ontoso, Hot spots and the hollowness of proton-proton interactions at high energies, arXiv:1605.09176; J. L. Albacete, H. Petersen, A. Soto-Ontoso, Correlated wounded hot spots in proton-proton interactions, arXiv:1612.06274], we present a novel initial state geometry for proton-proton interactions. We rely on gluonic hot spots as effective degrees of freedom whose transverse positions inside the proton are correlated. We explore the impact of these non-trivial spatial correlations on the eccentricity and triangularity of the system following a Monte Carlo Glauber approach.

  3. A feature-based approach to modeling protein–protein interaction hot spots

    PubMed Central

    Cho, Kyu-il; Kim, Dongsup; Lee, Doheon

    2009-01-01

    Identifying features that effectively represent the energetic contribution of an individual interface residue to the interactions between proteins remains problematic. Here, we present several new features and show that they are more effective than conventional features. By combining the proposed features with conventional features, we develop a predictive model for interaction hot spots. Initially, 54 multifaceted features, composed of different levels of information including structure, sequence and molecular interaction information, are quantified. Then, to identify the best subset of features for predicting hot spots, feature selection is performed using a decision tree. Based on the selected features, a predictive model for hot spots is created using support vector machine (SVM) and tested on an independent test set. Our model shows better overall predictive accuracy than previous methods such as the alanine scanning methods Robetta and FOLDEF, and the knowledge-based method KFC. Subsequent analysis yields several findings about hot spots. As expected, hot spots have a larger relative surface area burial and are more hydrophobic than other residues. Unexpectedly, however, residue conservation displays a rather complicated tendency depending on the types of protein complexes, indicating that this feature is not good for identifying hot spots. Of the selected features, the weighted atomic packing density, relative surface area burial and weighted hydrophobicity are the top 3, with the weighted atomic packing density proving to be the most effective feature for predicting hot spots. Notably, we find that hot spots are closely related to π–related interactions, especially π · · · π interactions. PMID:19273533

  4. A feature-based approach to modeling protein-protein interaction hot spots.

    PubMed

    Cho, Kyu-il; Kim, Dongsup; Lee, Doheon

    2009-05-01

    Identifying features that effectively represent the energetic contribution of an individual interface residue to the interactions between proteins remains problematic. Here, we present several new features and show that they are more effective than conventional features. By combining the proposed features with conventional features, we develop a predictive model for interaction hot spots. Initially, 54 multifaceted features, composed of different levels of information including structure, sequence and molecular interaction information, are quantified. Then, to identify the best subset of features for predicting hot spots, feature selection is performed using a decision tree. Based on the selected features, a predictive model for hot spots is created using support vector machine (SVM) and tested on an independent test set. Our model shows better overall predictive accuracy than previous methods such as the alanine scanning methods Robetta and FOLDEF, and the knowledge-based method KFC. Subsequent analysis yields several findings about hot spots. As expected, hot spots have a larger relative surface area burial and are more hydrophobic than other residues. Unexpectedly, however, residue conservation displays a rather complicated tendency depending on the types of protein complexes, indicating that this feature is not good for identifying hot spots. Of the selected features, the weighted atomic packing density, relative surface area burial and weighted hydrophobicity are the top 3, with the weighted atomic packing density proving to be the most effective feature for predicting hot spots. Notably, we find that hot spots are closely related to pi-related interactions, especially pi . . . pi interactions.

  5. Experimental Study of Ignition by Hot Spot in Internal Combustion Engines

    NASA Technical Reports Server (NTRS)

    Serruys, Max

    1938-01-01

    In order to carry out the contemplated study, it was first necessary to provide hot spots in the combustion chamber, which could be measured and whose temperature could be changed. It seemed difficult to realize both conditions working solely on the temperature of the cooling water in a way so as to produce hot spots on the cylinder wall capable of provoking autoignition. Moreover, in the majority of practical cases, autoignition is produced by the spark plug, one of the least cooled parts in the engine. The first procedure therefore did not resemble that which most generally occurs in actual engine operation. All of these considerations caused us to reproduce similar hot spots at the spark plugs. The hot spots produced were of two kinds and designated with the name of thermo-electric spark plug and of metallic hot spot.

  6. "Hot spots" growth on single nanowire controlled by electric charge.

    PubMed

    Xi, Shaobo; Liu, Xuehua; He, Ting; Tian, Lei; Wang, Wenhui; Sun, Rui; He, Weina; Zhang, Xuetong; Zhang, Jinping; Ni, Weihai; Zhou, Xiaochun

    2016-06-09

    "Hot spots" - a kind of highly active site, which are usually composed of some unique units, such as defects, interfaces, catalyst particles or special structures - can determine the performance of nanomaterials. In this paper, we study a model system, i.e. "hot spots" on a single Ag nanowire in the galvanic replacement reaction (GRR), by dark-field microscopy. The research reveals that electric charge can be released by the formation reaction of AgCl, and consequently the electrochemical potential on Ag nanowire drops. The electric charge could induce the reduction of Ag(+) to form the "hot spots" on the nanowire during the GRR. The appearance probability of "hot spots" is almost even along the Ag nanowire, while it is slightly lower near the two ends. The spatial distance between adjacent "hot spots" is also controlled by the charge, and obeys a model based on Boltzmann distribution. In addition, the distance distribution here has an advantage in electron transfer and energy saving. Therefore, it's necessary to consider the functions of electric charge during the synthesis or application of nanomaterials.

  7. EDF experience with {open_quotes}hot spot{close_quotes} management

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Guio, J.M. de

    1995-03-01

    During the past few years, {open_quotes}hot spots{close_quotes} due to the presence of particles of metal activated during their migration through the reactor core, have been detected at several French pressurized water reactor (PWR) units. These {open_quotes}hot spots,{close_quotes} which generate very high dose rates (from about 10 Gy/h to 200 G/h) are a significant factor in increase occupational exposures during outrates. Of particular concern are the difficult cases which prolong outage duration and increase the volume of radiological waste. Confronted with this situation, Electricite de France (EDF) has set up a national research group, as part of its ALARA program, tomore » establish procedures and techniques to avoid, detect, and eliminate of hot spots. In particular, specific processes have been developed to eliminate these hot spots which are most costly in terms of occupational exposure due to the need for reactor maintenance. This paper sets out the general approach adopted at EDF so far to cope with the problem of hot spots, illustrated by experience at Blayais 3 and 4.« less

  8. Hot Spots of Recombination in Fission Yeast: Inactivation of the M26 Hot Spot by Deletion of the Ade6 Promoter and the Novel Hotspot Ura4-Aim

    PubMed Central

    Zahn-Zabal, M.; Lehmann, E.; Kohli, J.

    1995-01-01

    The M26 mutation in the ade6 gene of Schizosaccharomyces pombe creates a hot spot of meiotic recombination. A single base substitution, the M26 mutation is situated within the open reading frame, near the 5' end. It has previously been shown that the heptanucleotide sequence 5' ATGACGT 3', which includes the M26 mutation, is required for hot spot activity. The 510-bp ade6-delXB deletion encompasses the promoter and the first 23 bp of the open reading frame, ending 112 bp upstream of M26. Deletion of the promoter in cis to M26 abolishes hot spot activity, while deletion in trans to M26 has no effect. Homozygous deletion of the promoter also eliminates M26 hot spot activity, indicating that the heterology created through deletion of the promoter per se is not responsible for the loss of hot spot activity. Thus, DNA sequences other than the heptanucleotide 5' ATGACGT 3', which must be located at the 5' end of the ade6 gene, appear to be required for hot spot activity. While the M26 hotspot stimulates crossovers associated with M26 conversion, it does not affect the crossover frequency in the intervals adjacent to ade6. The flanking marker ura4-aim, a heterology created by insertion of the ura4(+) gene upstream of ade6, turned out to be a hot spot itself. It shows disparity of conversion with preferential loss of the insertion. The frequency of conversion at ura4-aim is reduced when the M26 hot spot is active 15 kb away, indicating competition for recombination factors by hot spots in close proximity. PMID:7498729

  9. The evolutionary turnover of recombination hot spots contributes to speciation in mice.

    PubMed

    Smagulova, Fatima; Brick, Kevin; Pu, Yongmei; Camerini-Otero, R Daniel; Petukhova, Galina V

    2016-02-01

    Meiotic recombination is required for the segregation of homologous chromosomes and is essential for fertility. In most mammals, the DNA double-strand breaks (DSBs) that initiate meiotic recombination are directed to a subset of genomic loci (hot spots) by sequence-specific binding of the PRDM9 protein. Rapid evolution of the DNA-binding specificity of PRDM9 and gradual erosion of PRDM9-binding sites by gene conversion will alter the recombination landscape over time. To better understand the evolutionary turnover of recombination hot spots and its consequences, we mapped DSB hot spots in four major subspecies of Mus musculus with different Prdm9 alleles and in their F1 hybrids. We found that hot spot erosion governs the preferential usage of some Prdm9 alleles over others in hybrid mice and increases sequence diversity specifically at hot spots that become active in the hybrids. As crossovers are disfavored at such hot spots, we propose that sequence divergence generated by hot spot turnover may create an impediment for recombination in hybrids, potentially leading to reduced fertility and, eventually, speciation. Published by Cold Spring Harbor Laboratory Press.

  10. An automated decision-tree approach to predicting protein interaction hot spots.

    PubMed

    Darnell, Steven J; Page, David; Mitchell, Julie C

    2007-09-01

    Protein-protein interactions can be altered by mutating one or more "hot spots," the subset of residues that account for most of the interface's binding free energy. The identification of hot spots requires a significant experimental effort, highlighting the practical value of hot spot predictions. We present two knowledge-based models that improve the ability to predict hot spots: K-FADE uses shape specificity features calculated by the Fast Atomic Density Evaluation (FADE) program, and K-CON uses biochemical contact features. The combined K-FADE/CON (KFC) model displays better overall predictive accuracy than computational alanine scanning (Robetta-Ala). In addition, because these methods predict different subsets of known hot spots, a large and significant increase in accuracy is achieved by combining KFC and Robetta-Ala. The KFC analysis is applied to the calmodulin (CaM)/smooth muscle myosin light chain kinase (smMLCK) interface, and to the bone morphogenetic protein-2 (BMP-2)/BMP receptor-type I (BMPR-IA) interface. The results indicate a strong correlation between KFC hot spot predictions and mutations that significantly reduce the binding affinity of the interface. 2007 Wiley-Liss, Inc.

  11. Hot Spots on Io: Initial Results From Galileo's Near Infrared Mapping Spectrometer

    NASA Technical Reports Server (NTRS)

    Lopes-Gautier, Rosaly; Davies, A. G.; Carlson, R.; Smythe, W.; Kamp, L.; Soderblom, L.; Leader, F. E.; Mehlman, R.

    1997-01-01

    The Near-Infrared Mapping Spectrometer on Galileo has monitored the volcanic activity on Io since June 28, 1996. This paper presents preliminary analysis of NIMS thermal data for the first four orbits of the Galileo mission. NIMS has detected 18 new hot spots and 12 others which were previously known to be active. The distribution of the hot spots on Io's surface may not be random, as hot spots surround the two bright, SO2-rich regions of Bosphorus Regio and Colchis Regio. Most hot spots scan to be persistently active from orbit to orbit and 10 of those detected were active in 1979 during the Voyager encounters. We report the distribution of hot spot temperatures and find that they are consistent with silicate volcanism.

  12. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans.

    PubMed

    Berg, Ingrid L; Neumann, Rita; Lam, Kwan-Wood G; Sarbajna, Shriparna; Odenthal-Hesse, Linda; May, Celia A; Jeffreys, Alec J

    2010-10-01

    PRDM9 has recently been identified as a likely trans regulator of meiotic recombination hot spots in humans and mice. PRDM9 contains a zinc finger array that, in humans, can recognize a short sequence motif associated with hot spots, with binding to this motif possibly triggering hot-spot activity via chromatin remodeling. We now report that human genetic variation at the PRDM9 locus has a strong effect on sperm hot-spot activity, even at hot spots lacking the sequence motif. Subtle changes within the zinc finger array can create hot-spot nonactivating or enhancing variants and can even trigger the appearance of a new hot spot, suggesting that PRDM9 is a major global regulator of hot spots in humans. Variation at the PRDM9 locus also influences aspects of genome instability-specifically, a megabase-scale rearrangement underlying two genomic disorders as well as minisatellite instability-implicating PRDM9 as a risk factor for some pathological genome rearrangements.

  13. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans

    PubMed Central

    Berg, Ingrid L.; Neumann, Rita; Lam, Kwan-Wood G.; Sarbajna, Shriparna; Odenthal-Hesse, Linda; May, Celia A.; Jeffreys, Alec J.

    2011-01-01

    PRDM9 has recently been identified as a likely trans-regulator of meiotic recombination hot spots in humans and mice1-3. The protein contains a zinc finger array that in humans can recognise a short sequence motif associated with hot spots4, with binding to this motif possibly triggering hot-spot activity via chromatin remodelling5. We now show that variation in the zinc finger array in humans has a profound effect on sperm hot-spot activity, even at hot spots lacking the sequence motif. Very subtle changes within the array can create hot-spot non-activating and enhancing alleles, and even trigger the appearance of a new hot spot. PRDM9 thus appears to be the preeminent global regulator of hot spots in humans. Variation at this locus also influences aspects of genome instability, specifically a megabase-scale rearrangement underlying two genomic disorders6 as well as minisatellite instability7, implicating PRDM9 as a risk factor for some pathological genome rearrangements. PMID:20818382

  14. Designing gradient coils with reduced hot spot temperatures.

    PubMed

    While, Peter T; Forbes, Larry K; Crozier, Stuart

    2010-03-01

    Gradient coil temperature is an important concern in the design and construction of MRI scanners. Closely spaced gradient coil windings cause temperature hot spots within the system as a result of Ohmic heating associated with large current being driven through resistive material, and can strongly affect the performance of the coils. In this paper, a model is presented for predicting the spatial temperature distribution of a gradient coil, including the location and extent of temperature hot spots. Subsequently, a method is described for designing gradient coils with improved temperature distributions and reduced hot spot temperatures. Maximum temperature represents a non-linear constraint and a relaxed fixed point iteration routine is proposed to adjust coil windings iteratively to minimise this coil feature. Several examples are considered that assume different thermal material properties and cooling mechanisms for the gradient system. Coil winding solutions are obtained for all cases considered that display a considerable drop in hot spot temperature (>20%) when compared to standard minimum power gradient coils with equivalent gradient homogeneity, efficiency and inductance. The method is semi-analytical in nature and can be adapted easily to consider other non-linear constraints in the design of gradient coils or similar systems. Crown Copyright (c) 2009. Published by Elsevier Inc. All rights reserved.

  15. Shock initiation of explosives: High temperature hot spots explained

    NASA Astrophysics Data System (ADS)

    Bassett, Will P.; Johnson, Belinda P.; Neelakantan, Nitin K.; Suslick, Kenneth S.; Dlott, Dana D.

    2017-08-01

    We investigated the shock initiation of energetic materials with a tabletop apparatus that uses km s-1 laser-driven flyer plates to initiate tiny explosive charges and obtains complete temperature histories with a high dynamic range. By comparing various microstructured formulations, including a pentaerythritol tetranitrate (PETN) based plastic explosive (PBX) denoted XTX-8003, we determined that micron-scale pores were needed to create high hot spot temperatures. In charges where micropores (i.e., micron-sized pores) were present, a hot spot temperature of 6000 K was observed; when the micropores were pre-compressed to nm scale, however, the hot spot temperature dropped to ˜4000 K. By comparing XTX-8003 with an analog that replaced PETN by nonvolatile silica, we showed that the high temperatures require gas in the pores, that the high temperatures were created by adiabatic gas compression, and that the temperatures observed can be controlled by the choice of ambient gases. The hot spots persist in shock-compressed PBXs even in vacuum because the initially empty pores became filled with gas created in-situ by shock-induced chemical decomposition.

  16. Mitigation of Hot-Spots in Photovoltaic Systems Using Distributed Power Electronics

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Olalla, Carlos; Hasan, Md. Nazmul; Deline, Chris

    In the presence of partial shading and other mismatch factors, bypass diodes may not offer complete elimination of excessive power dissipation due to cell reverse biasing, commonly referred to as hot-spotting in photovoltaic (PV) systems. As a result, PV systems may experience higher failure rates and accelerated ageing. In this paper, a cell-level simulation model is used to assess occurrence of hot-spotting events in a representative residential rooftop system scenario featuring a moderate shading environment. The approach is further used to examine how well distributed power electronics converters mitigate the effects of partial shading and other sources of mismatch bymore » preventing activation of bypass diodes and thereby reducing the chances of heavy power dissipation and hot-spotting in mismatched cells. The simulation results confirm that the occurrence of heavy power dissipation is reduced in all distributed power electronics architectures, and that submodule-level converters offer nearly 100% mitigation of hot-spotting. In addition, the paper further elaborates on the possibility of hot-spot-induced permanent damage, predicting a lifetime energy loss above 15%. In conclusion, this energy loss is fully recoverable with submodule-level power converters that mitigate hot-spotting and prevent the damage.« less

  17. Mitigation of Hot-Spots in Photovoltaic Systems Using Distributed Power Electronics

    DOE PAGES

    Olalla, Carlos; Hasan, Md. Nazmul; Deline, Chris; ...

    2018-03-23

    In the presence of partial shading and other mismatch factors, bypass diodes may not offer complete elimination of excessive power dissipation due to cell reverse biasing, commonly referred to as hot-spotting in photovoltaic (PV) systems. As a result, PV systems may experience higher failure rates and accelerated ageing. In this paper, a cell-level simulation model is used to assess occurrence of hot-spotting events in a representative residential rooftop system scenario featuring a moderate shading environment. The approach is further used to examine how well distributed power electronics converters mitigate the effects of partial shading and other sources of mismatch bymore » preventing activation of bypass diodes and thereby reducing the chances of heavy power dissipation and hot-spotting in mismatched cells. The simulation results confirm that the occurrence of heavy power dissipation is reduced in all distributed power electronics architectures, and that submodule-level converters offer nearly 100% mitigation of hot-spotting. In addition, the paper further elaborates on the possibility of hot-spot-induced permanent damage, predicting a lifetime energy loss above 15%. In conclusion, this energy loss is fully recoverable with submodule-level power converters that mitigate hot-spotting and prevent the damage.« less

  18. Hot Spots on Io: Correlation of Infrared Emission and Visible Reflectance

    NASA Technical Reports Server (NTRS)

    Mcewen, A. S.; Soderblom, L.; Matson, D. L.; Johnson, T. V.

    1985-01-01

    The Voyager 1 infrared spectrometer (IRIS) data and two recently compiled data sets (Voyager imaging mosaics and measurements of Io's thermal emission from the NASA Infrared Telescope Facility) are correlated. These data were used to refine the correlation between dark spot optical properties (albedo and color) and thermal emission, to examine this correspondence on a satellite-wide scale, and to identify additional hot spots not included in the IRIS inventory. The results suggest the hot spots are liquid sulfur lava lakes, for the following reasons: (1) the melting point of sulfur is 390 K, and the model hot spot temperatures range from approximately 200 to 450 K; (2) the albedos and color of the dark spots, measured from the global mosaics, are consistent with laboratory measurements for liquid sulfur; (3) high resolution images of the dark features show morphologies suggestive of lava lakes; and (4) this hypothesis provides a simple and direct explanation for why dark spots are hot on Io.

  19. Hot spots on Io: Initial results from Galileo's near infrared mapping spectrometer

    USGS Publications Warehouse

    Lopes-Gautier, R.; Davies, A.G.; Carlson, R.; Smythe, W.; Kamp, L.; Soderblom, L.; Leader, F.E.; Mehlman, R.

    1997-01-01

    The Near-Infrared Mapping Spectrometer on Galileo has monitored the volcanic activity on Io since June 28, 1996. This paper presents preliminary analysis of NIMS thermal data for the first four orbits of the Galileo mission. NIMS has detected 18 new hot spots and 12 others which were previously known to be active. The distribution of the hot spots on Io's surface may not be random, as hot spots surround the two bright, SO2-rich regions of Bosphorus Regio and Colchis Regio. Most hot spots seem to be persistently active from orbit to orbit and 10 of those detected were active in 1979 during the Voyager encounters. We report the distribution of hot spot temperatures and find that they are consistent with silicate volcanism. Copyright 1997 by the American Geophysical Union.

  20. VLBI observations of 23 hot spots in the starburst galaxy M82

    NASA Technical Reports Server (NTRS)

    Bartel, Norbert; Ratner, Michael I.; Shapiro, Irwin I.; Rogers, Alan E. E.; Preston, Robert A.

    1987-01-01

    The simultaneous 2.3 and 8.4 GHz VLBI observations of 23 hot spots in the nuclear region of M82 presented indicate the presence of six hot spots at 2.3 GHz, but only one at 8.4 GHz. Attention is given to a mapping of the brightest hot spot, 41.9+58, at 2.3 GHz, which exhibits a complex brightness distribution whose angular width in the NE-SW direction is 45 mas at the 10-percent contour. These data are consistent with the hot spots in M82 being powerful SNRs, with ages between about 10 and 300 yr.

  1. The hot-spot environment of SW Sex in a low state

    NASA Astrophysics Data System (ADS)

    Groot, Paul J.; Rutten, René G. M.; van Paradijs, Jan

    2000-04-01

    Based on observations obtained with the 2.5m Isaac Newton Telescope we show that the characteristics of the SW Sex stars can be explained by the dominance of a `hot-spot' like feature in the accretion disk. In SW Sex this `hot-spot' region is located at a distance of 0.5 RL 1 from the white-dwarf and is best visible at phase ϕ=0.95. The location of the hot-spot as deduced from spectral eclipse mapping coincides with the formation site of the main emission lines. We deduce that this hot-spot region is formed by a shock, which we speculate to be the consequence of a high mass-transfer rate and a long spin-period of the non-magnetic white dwarf.

  2. Impacts of Implosion Asymmetry And Hot Spot Shape On Ignition Capsules

    NASA Astrophysics Data System (ADS)

    Cheng, Baolian; Kwan, Thomas J. T.; Wang, Yi-Ming; Yi, S. Austin; Batha, Steve

    2017-10-01

    Implosion symmetry plays a critical role in achieving high areal density and internal energy at stagnation during hot spot formation in ICF capsules. Asymmetry causes hot spot irregularity and stagnation de-synchronization that results in lower temperatures and areal densities of the hot fuel. These degradations significantly affect the alpha heating process in the DT fuel as well as on the thermonuclear performance of the capsules. In this work, we explore the physical factors determining the shape of the hot spot late in the implosion and the effects of shape on Î+/-particle transport. We extend our ignition theory [1-4] to include the hot spot shape and quantify the effects of the implosion asymmetry on both the ignition criterion and capsule performance. We validate our theory with the NIF existing experimental data Our theory shows that the ignition criterion becomes more restrictive with the deformation of the hot spot. Through comparison with the NIF data, we demonstrate that the shape effects on the capsules' performance become more explicit as the self-heating and yield of the capsules increases. The degradation of the thermonuclear burn by the hot spot shape for high yield shots to date can be as high as 20%. Our theory is in good agreement with the NIF data. This work was performed under the auspices of the U.S. Department of Energy by the Los Alamos National Laboratory under Contract No. W-7405-ENG-36.

  3. Hot spot generation in energetic materials created by long-wavelength infrared radiation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Chen, Ming-Wei; You, Sizhu; Suslick, Kenneth S.

    Hot spots produced by long-wavelength infrared (LWIR) radiation in an energetic material, crystalline RDX (1,3,5-trinitroperhydro-1,3,5-triazine), were studied by thermal-imaging microscopy. The LWIR source was a CO{sub 2} laser operating in the 28-30 THz range. Hot spot generation was studied using relatively low intensity (∼100 W cm{sup −2}), long-duration (450 ms) LWIR pulses. The hot spots could be produced repeatedly in individual RDX crystals, to investigate the fundamental mechanisms of hot spot generation by LWIR, since the peak hot-spot temperatures were kept to ∼30 K above ambient. Hot spots were generated preferentially beneath RDX crystal planes making oblique angles with the LWIR beam. Surprisingly,more » hot spots were more prominent when the LWIR wavelength was tuned to be weakly absorbed (absorption depth ∼30 μm) than when the LWIR wavelength was strongly absorbed (absorption depth ∼5 μm). This unexpected effect was explained using a model that accounts for LWIR refraction and RDX thermal conduction. The weakly absorbed LWIR is slightly focused underneath the oblique crystal planes, and it penetrates the RDX crystals more deeply, increasing the likelihood of irradiating RDX defect inclusions that are able to strongly absorb or internally focus the LWIR beam.« less

  4. The Measurement of Hot-Spots in Granulated Ammonium Nitrate

    NASA Astrophysics Data System (ADS)

    Proud, W. G.

    2002-07-01

    Ammonium Nitrate (AN) is one of the components of the most widely used explosive in the world namely, ammonium nitrate: fuel oil mixtures (ANFO). By itself, it is an oxygen positive explosive with a large critical diameter. Hot-spots are produced in explosives by various means including gas space collapse, localised shear or friction. If these hot-spots reach critical conditions of size, temperature and duration reaction can grow. This deflagration stage may eventually transition to detonation. This paper describes high-speed image-intensified photography study in which the number and growth of hot spots in granular AN are monitored for a range of different impact pressures. The results can be used in detonation codes to provide a more accurate and realistic description of the initiation process.

  5. Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences.

    PubMed

    Chen, Peng; Li, Jinyan; Wong, Limsoon; Kuwahara, Hiroyuki; Huang, Jianhua Z; Gao, Xin

    2013-08-01

    Hot spot residues of proteins are fundamental interface residues that help proteins perform their functions. Detecting hot spots by experimental methods is costly and time-consuming. Sequential and structural information has been widely used in the computational prediction of hot spots. However, structural information is not always available. In this article, we investigated the problem of identifying hot spots using only physicochemical characteristics extracted from amino acid sequences. We first extracted 132 relatively independent physicochemical features from a set of the 544 properties in AAindex1, an amino acid index database. Each feature was utilized to train a classification model with a novel encoding schema for hot spot prediction by the IBk algorithm, an extension of the K-nearest neighbor algorithm. The combinations of the individual classifiers were explored and the classifiers that appeared frequently in the top performing combinations were selected. The hot spot predictor was built based on an ensemble of these classifiers and to work in a voting manner. Experimental results demonstrated that our method effectively exploited the feature space and allowed flexible weights of features for different queries. On the commonly used hot spot benchmark sets, our method significantly outperformed other machine learning algorithms and state-of-the-art hot spot predictors. The program is available at http://sfb.kaust.edu.sa/pages/software.aspx. Copyright © 2013 Wiley Periodicals, Inc.

  6. Volcanic hot spots on Io - Correlation with low-albedo calderas

    NASA Technical Reports Server (NTRS)

    Mcewen, A. S.; Soderblom, L. A.; Matson, D. L.; Johnson, T. V.

    1985-01-01

    In the present investigation, it is shown that a one-to-one correspondence exists on Io between hot spots and features with normal albedos less than or equal to 0.3 (in the Voyager orange filter). It is pointed out that the hot spots are a manifestation of the prolific volcanic activity and heat flow of Io, widely believed to be due to dissipation of tidal energy resulting from the forward eccentricity of Io's orbit and the tides raised by Jupiter. All of the hot spots identified by the Voyager 1 infrared interferometric spectrometer (IRIS) correspond to relatively low-albedo features. An approach has been developed to identify hot spots not included in the IRIS inventory and to model their temperatures. The spectral reflectivities of the low-albedo features, extracted from the multispectral mosaics produced by Soderblom et al. (1985), are also presented, and compared to the laboratory spectra of a variety of candidate materials.

  7. Bounds on geologically current rates of motion of groups of hot spots

    NASA Astrophysics Data System (ADS)

    Wang, Chengzu; Gordon, Richard G.; Zhang, Tuo

    2017-06-01

    It is widely believed that groups of hot spots in different regions of the world are in relative motion at rates of 10 to 30 mm a-1 or more. Here we present a new method for analyzing geologically current motion between groups of hot spots beneath different plates. In an inversion of 56 globally distributed, equally weighted trends of hot spot tracks, the dispersion is dominated by differences in trend between different plates rather than differences within plates. Nonetheless the rate of hot spot motion perpendicular to the direction of absolute plate motion, vperp, differs significantly from zero for only 3 of 10 plates and then by merely 0.3 to 1.4 mm a-1. The global mean upper bound on |vperp| is 3.2 ± 2.7 mm a-1. Therefore, hot spots move slowly and can be used to define a global reference frame for plate motions.

  8. Extracting Hot spots of Topics from Time Stamped Documents

    PubMed Central

    Chen, Wei; Chundi, Parvathi

    2011-01-01

    Identifying time periods with a burst of activities related to a topic has been an important problem in analyzing time-stamped documents. In this paper, we propose an approach to extract a hot spot of a given topic in a time-stamped document set. Topics can be basic, containing a simple list of keywords, or complex. Logical relationships such as and, or, and not are used to build complex topics from basic topics. A concept of presence measure of a topic based on fuzzy set theory is introduced to compute the amount of information related to the topic in the document set. Each interval in the time period of the document set is associated with a numeric value which we call the discrepancy score. A high discrepancy score indicates that the documents in the time interval are more focused on the topic than those outside of the time interval. A hot spot of a given topic is defined as a time interval with the highest discrepancy score. We first describe a naive implementation for extracting hot spots. We then construct an algorithm called EHE (Efficient Hot Spot Extraction) using several efficient strategies to improve performance. We also introduce the notion of a topic DAG to facilitate an efficient computation of presence measures of complex topics. The proposed approach is illustrated by several experiments on a subset of the TDT-Pilot Corpus and DBLP conference data set. The experiments show that the proposed EHE algorithm significantly outperforms the naive one, and the extracted hot spots of given topics are meaningful. PMID:21765568

  9. The Measurement of Hot-spots in Granulated Ammonium Nitrate

    NASA Astrophysics Data System (ADS)

    Proud, William; Field, John

    2001-06-01

    Ammonium Nitrate (AN) is one of the components of the most widely used explosive in the world ammonium nitrate: fuel oil mixtures (ANFO). By itself, it is an oxygen negative explosive with a large critical diameter. Hot-spots are produced in explosives by various means including gas space collapse, localised shear or friction. If these hot-spots reach critical conditions of size, temperature and duration size reaction can grow. This deflagration stage may eventually transition to detonation. This paper describes a system and presents results where high-speed image intensified photography is used to monitor the number and growth of hot spots in granular AN under a range of different impact pressures. The results can be used in detonation codes to provide a more accurate and realistic description of the initiation process.

  10. Rigorous assessment and integration of the sequence and structure based features to predict hot spots

    PubMed Central

    2011-01-01

    Background Systematic mutagenesis studies have shown that only a few interface residues termed hot spots contribute significantly to the binding free energy of protein-protein interactions. Therefore, hot spots prediction becomes increasingly important for well understanding the essence of proteins interactions and helping narrow down the search space for drug design. Currently many computational methods have been developed by proposing different features. However comparative assessment of these features and furthermore effective and accurate methods are still in pressing need. Results In this study, we first comprehensively collect the features to discriminate hot spots and non-hot spots and analyze their distributions. We find that hot spots have lower relASA and larger relative change in ASA, suggesting hot spots tend to be protected from bulk solvent. In addition, hot spots have more contacts including hydrogen bonds, salt bridges, and atomic contacts, which favor complexes formation. Interestingly, we find that conservation score and sequence entropy are not significantly different between hot spots and non-hot spots in Ab+ dataset (all complexes). While in Ab- dataset (antigen-antibody complexes are excluded), there are significant differences in two features between hot pots and non-hot spots. Secondly, we explore the predictive ability for each feature and the combinations of features by support vector machines (SVMs). The results indicate that sequence-based feature outperforms other combinations of features with reasonable accuracy, with a precision of 0.69, a recall of 0.68, an F1 score of 0.68, and an AUC of 0.68 on independent test set. Compared with other machine learning methods and two energy-based approaches, our approach achieves the best performance. Moreover, we demonstrate the applicability of our method to predict hot spots of two protein complexes. Conclusion Experimental results show that support vector machine classifiers are quite

  11. Io hot spots - Infrared photometry of satellite occultations

    NASA Technical Reports Server (NTRS)

    Goguen, J. D.; Matson, D. L.; Sinton, W. M.; Howell, R. R.; Dyck, H. M.

    1988-01-01

    Io's active hot spots, which are presently mapped on the basis of IR photometry of this moon's occultation by other Gallilean satellites, are obtained with greatest spatial resolution near the sub-earth point. A model is developed for the occultation lightcurves, and its fitting to the data defines the apparent path of the occulting satellite relative to Io; the mean error in apparent relative position of occulting satellites is of the order of 178 km. A heretofore unknown, 20-km diameter hot spot is noted on Io's leading hemisphere.

  12. Hot SPOT Eclipses in Dwarf Novae

    NASA Astrophysics Data System (ADS)

    Smak, J.

    1996-10-01

    Eclipses of the hot spot in four dwarf novae: U Gem, IP Peg, Z Cha, and OY Car are re-analyzed, assuming two models for the shape of the spot. In Model 1 an elliptical spot is assumed, with the semi-axes s_a in the orbital plane and s_b perpendicular to the orbital plane, its center located on the stream trajectory. The results show that such an ellipse is, within errors, tangent to the disk's circumference. In all four cases the resulting dimensions of the spot s_a are larger than the theoretical cross-section of the stream. Accordingly, in Model2 the spot is assumed to consist of a head, centered on the stream trajectory, and a tail, extending downstream, ie., along disk's circumference. In some cases the resulting parameters, eg., mass ratios or disk radii, differ significantly from those obtained with Model 1.

  13. Topographic hot spot before descemet stripping automated endothelial keratoplasty is associated with postoperative hyperopic shift.

    PubMed

    Shimizu, Tsutomu; Yamaguchi, Takefumi; Satake, Yoshiyuki; Shimazaki, Jun

    2015-03-01

    The aim of this study was to investigate topographic "hot spots" on the anterior corneal surface before Descemet stripping automated endothelial keratoplasty (DSAEK) and their effects on postoperative visual acuity and hyperopic shift. Twenty-seven eyes of 27 patients with bullous keratopathy, who underwent DSAEK were studied. We defined a hot spot as a focal area with relatively high refractive power on the anterior corneal surface in eyes with bullous keratopathy. Refractive spherical equivalent, keratometric value, and corneal topography were retrospectively evaluated using anterior segment optical coherence tomography (AS-OCT). Hot spots were identified in 11 eyes (42.3%) before DSAEK and disappeared in 9 eyes of these eyes (81.8%) at 6 months after DSAEK. AS-OCT revealed focal epithelial thickening in the same areas as the hot spots. There was no significant difference in the postoperative visual acuity between eyes with and without hot spots (P > 0.05). The keratometric value of the anterior corneal surface significantly flattened from 45.7 ± 2.7 diopters (D) before DSAEK to 44.2 ± 2.7 D 1 month after DSAEK in eyes with hot spots (P = 0.01), whereas in eyes without hot spots, there were no significant differences in the keratometric values before and after DSAEK. At 6 months, the refractive change was +1.1 ± 1.3 D in eyes with hot spots and -0.2 ± 0.6 D in eyes without hot spots (P = 0.034). In eyes with focal epithelial thickening, topographic hot spots on the anterior corneal surface were observed using AS-OCT. The hot spots disappeared after DSAEK and had no influence on the postoperative visual acuity.

  14. Advantages of Fast Ignition Scenarios with Two Hot Spots for Space Propulsion Systems

    NASA Astrophysics Data System (ADS)

    Shmatov, M. L.

    The use of the fast ignition scenarios with the attempts to create two hot spots in one blob of the compressed thermonuclear fuel or, briefly, scenarios with two hot spots in space propulsion systems is proposed. The model, predicting that for such scenarios the probability pf of failure of ignition of thermonuclear microexplosion can be significantly less than that for the similar scenarios with the attempts to create one hot spot in one blob of the compressed fuel, is presented. For space propulsion systems consuming a relatively large amount of propellant, a decrease in pf due to the choice of the scenario with two hot spots can result in large, for example, two-fold, increase in the payload mass. Other advantages of the scenarios with two hot spots and some problems related to them are considered.

  15. Distinct Rayleigh scattering from hot spot mutant p53 proteins reveals cancer cells.

    PubMed

    Jun, Ho Joon; Nguyen, Anh H; Kim, Yeul Hong; Park, Kyong Hwa; Kim, Doyoun; Kim, Kyeong Kyu; Sim, Sang Jun

    2014-07-23

    The scattering of light redirects and resonances when an electromagnetic wave interacts with electrons orbits in the hot spot core protein and oscillated electron of the gold nanoparticles (AuNP). This report demonstrates convincingly that resonant Rayleigh scattering generated from hot spot mutant p53 proteins is correspondence to cancer cells. Hot spot mutants have unique local electron density changes that affect specificity of DNA binding affinity compared with wild types. Rayleigh scattering changes introduced by hot-spot mutations were monitored by localized surface plasmon resonance (LSPR) shift changes. The LSPR λmax shift for hot-spot mutants ranged from 1.7 to 4.2 nm for mouse samples and from 0.64 nm to 2.66 nm for human samples, compared to 9.6 nm and 15 nm for wild type and mouse and human proteins, respectively with a detection sensitivity of p53 concentration at 17.9 nM. It is interesting that hot-spot mutants, which affect only interaction with DNA, launches affinitive changes as considerable as wild types. These changes propose that hot-spot mutants p53 proteins can be easily detected by local electron density alterations that disturbs the specificity of DNA binding of p53 core domain on the surface of the DNA probed-nanoplasmonic sensor. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. Hot-Spot Ignition Mechanisms for Explosives and Propellants

    NASA Astrophysics Data System (ADS)

    Field, J. E.; Bourne, N. K.; Palmer, S. J. P.; Walley, S. M.

    1992-05-01

    This paper describes the response of explosives to stress and impact and in particular the mechanisms of `hot-spot' production. Samples in the form of single crystals, powder layers, pressed pellets, gels, polymer bonded explosives (PBXs) and propellants have been studied. Techniques used include a drop-weight facility with transparent anvils which allows photography at microsecond framing intervals, an instrumented drop-weight machine, a miniaturized Hopkinson bar system for high strain rate property measurement, laser speckle for studying the deformation and fracture of PBXs, an automated system for analysing speckle patterns and heat sensitive film for recording the positions and temperatures of hot spots. Polishing and staining methods have been developed to observe the microstructure of PBXs and failure during quasi-static loading. Ignition, when it occurred, took place at local hot-spot sites. Evidence is discussed for a variety of ignition mechanisms including adiabatic shear of the explosive, adiabatic heating of trapped gases during cavity collapse, viscous flow, friction, fracture and shear of added particles and triboluminescent discharge.

  17. Variability of Jupiter's Five-Micron Hot Spot Inventory

    NASA Technical Reports Server (NTRS)

    Yanamandra-Fisher, Padma A.; Orton, G. S.; Wakefield, L.; Rogers, J. H.; Simon-Miller, A. A.; Boydstun, K.

    2012-01-01

    Global upheavals on Jupiter involve changes in the albedo of entire axisymmetric regions, lasting several years, with the last two occurring in 1989 and 2006. Against this backdrop of planetary-scale changes, discrete features such as the Great Red Spot (GRS), and other vortices exhibit changes on shorter spatial- and time-scales. We track the variability of the discrete equatorial 5-micron hot spots, semi-evenly spaced in longitude and confined to a narrow latitude band centered at 6.5degN (southern edge of the North Equatorial Belt, NEB), abundant in Voyager images. Tantalizingly similar patterns were observed in the visible (bright plumes and blue-gray regions), where reflectivity in the red is anti-correlated with 5-microns thermal radiance. Ortiz et al. (1998, GRL, 103) characterized the latitude and drift rates of the hot spots, including the descent of the Galileo probe at the southern edge of a 5-micron hot spot, as the superposition of equatorial Rossby waves, with phase speeds between 99 - 103m/s, relative to System III. We note that the high 5-micron radiances correlate well but not perfectly with high 8.57-micron radiances. Because the latter are modulated primarily by changes in the upper ammonia (NH3) ice cloud opacity, this correlation implies that changes in the ammonia ice cloud field may be responsible for the variability seen in the 5-m maps. During the NEB fade (2011 - early 2012), however, these otherwise ubiquitous features were absent, an atmospheric state not seen in decades. The ongoing NEB revival indicates nascent 5-m hot spots as early as April 2012, with corresponding visible dark spots. Their continuing growth through July 2012 indicates the possit.le re-establishment of Rossby waves. The South Equatorial Belt (SEB) and NEB revivals began similarly with an instability that developed into a major outbreak, and many similarities in the observed propagation of clear regions.

  18. Lessons from hot spot analysis for fragment-based drug discovery

    PubMed Central

    Hall, David R.; Vajda, Sandor

    2015-01-01

    Analysis of binding energy hot spots at protein surfaces can provide crucial insights into the prospects for successful application of fragment-based drug discovery (FBDD), and whether a fragment hit can be advanced into a high affinity, druglike ligand. The key factor is the strength of the top ranking hot spot, and how well a given fragment complements it. We show that published data are sufficient to provide a sophisticated and quantitative understanding of how hot spots derive from protein three-dimensional structure, and how their strength, number and spatial arrangement govern the potential for a surface site to bind to fragment-sized and larger ligands. This improved understanding provides important guidance for the effective application of FBDD in drug discovery. PMID:26538314

  19. Identification of hot spot area of sediment contamination in a lake system using texture characteristics.

    PubMed

    Sheela, A M; Letha, J; Joseph, Sabu; Thomas, Jobin

    2013-04-01

    Texture plays an important role in the identification of polluted stretch in a lake system. The organic matter as well as toxic elements get accumulated in the finer sediments. The aim of the work is to show the spatio-temporal distribution of texture of the lake sediment (Akkulam-Veli lake, Kerala) and to identify the hot spot areas of contamination. Hot spot areas vary with seasons. During PRM, (premonsoon), the upstream portion of the Akkulam lake is the hot spot. During MON (monsoon), the downstream portion of the Akkulam lake and the upstream portion of the Veli lake are the hot spots. During POM (postmonsoon), hot spot area is the downstream portion of the Akkulam lake. This methodology can be used for the quick identification of hot spots in water bodies.

  20. Computational identification of binding energy hot spots in protein-RNA complexes using an ensemble approach.

    PubMed

    Pan, Yuliang; Wang, Zixiang; Zhan, Weihua; Deng, Lei

    2018-05-01

    Identifying RNA-binding residues, especially energetically favored hot spots, can provide valuable clues for understanding the mechanisms and functional importance of protein-RNA interactions. Yet, limited availability of experimentally recognized energy hot spots in protein-RNA crystal structures leads to the difficulties in developing empirical identification approaches. Computational prediction of RNA-binding hot spot residues is still in its infant stage. Here, we describe a computational method, PrabHot (Prediction of protein-RNA binding hot spots), that can effectively detect hot spot residues on protein-RNA binding interfaces using an ensemble of conceptually different machine learning classifiers. Residue interaction network features and new solvent exposure characteristics are combined together and selected for classification with the Boruta algorithm. In particular, two new reference datasets (benchmark and independent) have been generated containing 107 hot spots from 47 known protein-RNA complex structures. In 10-fold cross-validation on the training dataset, PrabHot achieves promising performances with an AUC score of 0.86 and a sensitivity of 0.78, which are significantly better than that of the pioneer RNA-binding hot spot prediction method HotSPRing. We also demonstrate the capability of our proposed method on the independent test dataset and gain a competitive advantage as a result. The PrabHot webserver is freely available at http://denglab.org/PrabHot/. leideng@csu.edu.cn. Supplementary data are available at Bioinformatics online.

  1. Analysis of microstructure-dependent shock dissipation and hot-spot formation in granular metalized explosive

    NASA Astrophysics Data System (ADS)

    Chakravarthy, Sunada; Gonthier, Keith A.

    2016-07-01

    Variations in the microstructure of granular explosives (i.e., particle packing density, size, shape, and composition) can affect their shock sensitivity by altering thermomechanical fields at the particle-scale during pore collapse within shocks. If the deformation rate is fast, hot-spots can form, ignite, and interact, resulting in burn at the macro-scale. In this study, a two-dimensional finite and discrete element technique is used to simulate and examine shock-induced dissipation and hot-spot formation within low density explosives (68%-84% theoretical maximum density (TMD)) consisting of large ensembles of HMX (C4H8N8O8) and aluminum (Al) particles (size ˜ 60 -360 μm). Emphasis is placed on identifying how the inclusion of Al influences effective shock dissipation and hot-spot fields relative to equivalent ensembles of neat/pure HMX for shocks that are sufficiently strong to eliminate porosity. Spatially distributed hot-spot fields are characterized by their number density and area fraction enabling their dynamics to be described in terms of nucleation, growth, and agglomeration-dominated phases with increasing shock strength. For fixed shock particle speed, predictions indicate that decreasing packing density enhances shock dissipation and hot-spot formation, and that the inclusion of Al increases dissipation relative to neat HMX by pressure enhanced compaction resulting in fewer but larger HMX hot-spots. Ensembles having bimodal particle sizes are shown to significantly affect hot-spot dynamics by altering the spatial distribution of hot-spots behind shocks.

  2. Hot spots in energetic materials generated by infrared and ultrasound, detected by thermal imaging microscopy.

    PubMed

    Chen, Ming-Wei; You, Sizhu; Suslick, Kenneth S; Dlott, Dana D

    2014-02-01

    We have observed and characterized hot spot formation and hot-spot ignition of energetic materials (EM), where hot spots were created by ultrasonic or long-wavelength infrared (LWIR) exposure, and were detected by high-speed thermal microscopy. The microscope had 15-20 μm spatial resolution and 8.3 ms temporal resolution. LWIR was generated by a CO2 laser (tunable near 10.6 μm or 28.3 THz) and ultrasound by a 20 kHz acoustic horn. Both methods of energy input created spatially homogeneous energy fields, allowing hot spots to develop spontaneously due to the microstructure of the sample materials. We observed formation of hot spots which grew and caused the EM to ignite. The EM studied here consisted of composite solids with 1,3,5-trinitroperhydro-1,3,5-triazine crystals and polymer binders. EM simulants based on sucrose crystals in binders were also examined. The mechanisms of hot spot generation were different with LWIR and ultrasound. With LWIR, hot spots were most efficiently generated within the EM crystals at LWIR wavelengths having longer absorption depths of ∼25 μm, suggesting that hot spot generation mechanisms involved localized absorbing defects within the crystals, LWIR focusing in the crystals or LWIR interference in the crystals. With ultrasound, hot spots were primarily generated in regions of the polymer binder immediately adjacent to crystal surfaces, rather than inside the EM crystals.

  3. Anomalous ultrafast dynamics of hot plasmonic electrons in nanostructures with hot spots

    DOE PAGES

    Harutyunyan, Hayk; Martinson, Alex B. F.; Rosenmann, Daniel; ...

    2015-08-03

    The interaction of light and matter in metallic nanosystems is mediated by the collective oscillation of surface electrons, called plasmons. After excitation, plasmons are absorbed by the metal electrons through inter- and intraband transitions, creating a highly non-thermal distribution of electrons. The electron population then decays through electron-electron interactions, creating a hot electron distribution within a few hundred femtoseconds, followed by a further relaxation via electron-phonon scattering on the timescale of a few pico-seconds. In the spectral domain, hot plasmonic electrons induce changes to the plasmonic resonance of the nanostructure by modifying the dielectric constant of the metal. Here, wemore » report on the observation of anomalously strong changes to the ultrafast temporal and spectral responses of these excited hot plasmonic electrons in hybrid metal/oxide nanostructures as a result of varying the geometry and composition of the nanostructure and the excitation wavelength. In particular, we show a large ultrafast, pulsewidth-limited contribution to the excited electron decay signal in hybrid nanostructures containing hot spots. The intensity of this contribution correlates with the efficiency of the generation of highly excited surface electrons. Using theoretical models, we attribute this effect to the generation of hot plasmonic electrons from hot spots. Finally, we then develop general principles to enhance the generation of energetic electrons through specifically designed plasmonic nanostructures that could be used in applications where hot electron generation is beneficial, such as in solar photocatalysis, photodetectors and nonlinear devices.« less

  4. Anomalous ultrafast dynamics of hot plasmonic electrons in nanostructures with hot spots.

    PubMed

    Harutyunyan, Hayk; Martinson, Alex B F; Rosenmann, Daniel; Khorashad, Larousse Khosravi; Besteiro, Lucas V; Govorov, Alexander O; Wiederrecht, Gary P

    2015-09-01

    The interaction of light and matter in metallic nanosystems is mediated by the collective oscillation of surface electrons, called plasmons. After excitation, plasmons are absorbed by the metal electrons through inter- and intraband transitions, creating a highly non-thermal distribution of electrons. The electron population then decays through electron-electron interactions, creating a hot electron distribution within a few hundred femtoseconds, followed by a further relaxation via electron-phonon scattering on the timescale of a few picoseconds. In the spectral domain, hot plasmonic electrons induce changes to the plasmonic resonance of the nanostructure by modifying the dielectric constant of the metal. Here, we report on the observation of anomalously strong changes to the ultrafast temporal and spectral responses of these excited hot plasmonic electrons in hybrid metal/oxide nanostructures as a result of varying the geometry and composition of the nanostructure and the excitation wavelength. In particular, we show a large ultrafast, pulsewidth-limited contribution to the excited electron decay signal in hybrid nanostructures containing hot spots. The intensity of this contribution correlates with the efficiency of the generation of highly excited surface electrons. Using theoretical models, we attribute this effect to the generation of hot plasmonic electrons from hot spots. We then develop general principles to enhance the generation of energetic electrons through specifically designed plasmonic nanostructures that could be used in applications where hot electron generation is beneficial, such as in solar photocatalysis, photodetectors and nonlinear devices.

  5. Protein-protein interface analysis and hot spots identification for chemical ligand design.

    PubMed

    Chen, Jing; Ma, Xiaomin; Yuan, Yaxia; Pei, Jianfeng; Lai, Luhua

    2014-01-01

    Rational design for chemical compounds targeting protein-protein interactions has grown from a dream to reality after a decade of efforts. There are an increasing number of successful examples, though major challenges remain in the field. In this paper, we will first give a brief review of the available methods that can be used to analyze protein-protein interface and predict hot spots for chemical ligand design. New developments of binding sites detection, ligandability and hot spots prediction from the author's group will also be described. Pocket V.3 is an improved program for identifying hot spots in protein-protein interface using only an apo protein structure. It has been developed based on Pocket V.2 that can derive receptor-based pharmacophore model for ligand binding cavity. Given similarities and differences between the essence of pharmacophore and hot spots for guiding design of chemical compounds, not only energetic but also spatial properties of protein-protein interface are used in Pocket V.3 for dealing with protein-protein interface. In order to illustrate the capability of Pocket V.3, two datasets have been used. One is taken from ASEdb and BID having experimental alanine scanning results for testing hot spots prediction. The other is taken from the 2P2I database containing complex structures of protein-ligand binding at the original protein-protein interface for testing hot spots application in ligand design.

  6. Lessons from Hot Spot Analysis for Fragment-Based Drug Discovery.

    PubMed

    Hall, David R; Kozakov, Dima; Whitty, Adrian; Vajda, Sandor

    2015-11-01

    Analysis of binding energy hot spots at protein surfaces can provide crucial insights into the prospects for successful application of fragment-based drug discovery (FBDD), and whether a fragment hit can be advanced into a high-affinity, drug-like ligand. The key factor is the strength of the top ranking hot spot, and how well a given fragment complements it. We show that published data are sufficient to provide a sophisticated and quantitative understanding of how hot spots derive from a protein 3D structure, and how their strength, number, and spatial arrangement govern the potential for a surface site to bind to fragment-sized and larger ligands. This improved understanding provides important guidance for the effective application of FBDD in drug discovery. Copyright © 2015 Elsevier Ltd. All rights reserved.

  7. Functional Roles of Acetylated Histone Marks at Mouse Meiotic Recombination Hot Spots

    PubMed Central

    Wu, Zhen; Fallahi, Mohammad; Ouizem, Souad; Liu, Qin; Li, Weimin; Costi, Roberta; Roush, William R.; Bois, Philippe R. J.

    2016-01-01

    ABSTRACT Meiotic recombination initiates following the formation of DNA double-strand breaks (DSBs) by the Spo11 endonuclease early in prophase I, at discrete regions in the genome coined “hot spots.” In mammals, meiotic DSB site selection is directed in part by sequence-specific binding of PRDM9, a polymorphic histone H3 (H3K4Me3) methyltransferase. However, other chromatin features needed for meiotic hot spot specification are largely unknown. Here we show that the recombinogenic cores of active hot spots in mice harbor several histone H3 and H4 acetylation and methylation marks that are typical of open, active chromatin. Further, deposition of these open chromatin-associated histone marks is dynamic and is manifest at spermatogonia and/or pre-leptotene-stage cells, which facilitates PRDM9 binding and access for Spo11 to direct the formation of DSBs, which are initiated at the leptotene stage. Importantly, manipulating histone acetylase and deacetylase activities established that histone acetylation marks are necessary for both hot spot activity and crossover resolution. We conclude that there are functional roles for histone acetylation marks at mammalian meiotic recombination hot spots. PMID:27821479

  8. Calculation of TIR Canopy Hot Spot and Implications for Earth Radiation Budget

    NASA Technical Reports Server (NTRS)

    Smith, J. A.; Ballard, J. R., Jr.

    2000-01-01

    Using a 3-D model for thermal infrared exitance and the Lowtran 7 atmospheric radiative transfer model, we compute the variation in brightness temperature with view direction and, in particular, the canopy thermal hot spot. We then perform a sensitivity analysis of surface energy balance components for a nominal case using a simple SVAT model given the uncertainty in canopy temperature arising from the thermal hot spot effect. Canopy thermal hot spot variations of two degrees C lead to differences of plus or minus 24% in the midday available energy.

  9. Magmatic effects of the Cobb hot spot on the Juan de Fuca Ridge

    USGS Publications Warehouse

    Chadwick, John; Perfit, M.; Ridley, I.; Jonasson, I.; Kamenov, G.; Chadwick, W.; Embley, R.; le, Roux P.; Smith, M.

    2005-01-01

    The interaction of the Juan de Fuca Ridge with the Cobb hot spot has had a considerable influence on the magmatism of the Axial Segment of the ridge, the second-order segment that overlies the hot spot. In addition to the construction of the large volcanic edifice of Axial Seamount, the Axial Segment has shallow bathymetry and a prevalence of constructional volcanic features along its 100-km length, suggesting that hot spot-derived magmas supplement and oversupply the ridge. Lavas are generally more primitive at Axial Seamount and more evolved in the Axial Segment rift zones, suggesting that fractional crystallization is enhanced with increasing distance from the hot spot because of a reduced magma supply and more rapid cooling. Although the Cobb hot spot is not an isotopically enriched plume, it produces lavas with some distinct geochemical characteristics relative to normal mid-ocean ridge basalt, such as enrichments in alkalis and highly incompatible trace elements, that can be used as tracers to identify the presence and prevalence of the hot spot influence along the ridge. These characteristics are most prominent at Axial Seamount and decline in gradients along the Axial Segment. The physical model that can best explain the geochemical observations is a scenario in which hot spot and mid-ocean ridge basalt (MORB) magmas mix to varying degrees, with the proportions controlled by the depth to the MORB source. Modeling of two-component mixing suggests that MORB is the dominant component in most Axial Segment basalts. Copyright 2005 by the American Geophysical Union.

  10. Hot spots and active longitudes: Organization of solar activity as a probe of the interior

    NASA Technical Reports Server (NTRS)

    Bai, Taeil; Hoeksema, J. Todd; Scherrer, Phil H.

    1995-01-01

    In order to investigate how solar activity is organized in longitude, major solar flares, large sunspot groups, and large scale photospheric magnetic field strengths were analyzed. The results of these analyses are reported. The following results are discussed: hot spots, initially recognized as areas of high concentration of major flares, are the preferred locations for the emergence of big sunspot groups; double hot spots appear in pairs that rotate at the same rate separated by about 180 deg in longitude, whereas, single hot spots have no such companions; the northern and southern hemispheres behave differently in organizing solar activity in longitude; the lifetime of hot spots range from one to several solar cycles; a hot spot is not always active throughout its lifetime, but goes through dormant periods; and hot spots with different rotational periods coexist in the same hemisphere during the same solar cycle.

  11. A Computational Investigation of Small-Molecule Engagement of Hot Spots at Protein-Protein Interaction Interfaces.

    PubMed

    Xu, David; Si, Yubing; Meroueh, Samy O

    2017-09-25

    The binding affinity of a protein-protein interaction is concentrated at amino acids known as hot spots. It has been suggested that small molecules disrupt protein-protein interactions by either (i) engaging receptor protein hot spots or (ii) mimicking hot spots of the protein ligand. Yet, no systematic studies have been done to explore how effectively existing small-molecule protein-protein interaction inhibitors mimic or engage hot spots at protein interfaces. Here, we employ explicit-solvent molecular dynamics simulations and end-point MM-GBSA free energy calculations to explore this question. We select 36 compounds for which high-quality binding affinity and cocrystal structures are available. Five complexes that belong to three classes of protein-protein interactions (primary, secondary, and tertiary) were considered, namely, BRD4•H4, XIAP•Smac, MDM2•p53, Bcl-xL•Bak, and IL-2•IL-2Rα. Computational alanine scanning using MM-GBSA identified hot-spot residues at the interface of these protein interactions. Decomposition energies compared the interaction of small molecules with individual receptor hot spots to those of the native protein ligand. Pharmacophore analysis was used to investigate how effectively small molecules mimic the position of hot spots of the protein ligand. Finally, we study whether small molecules mimic the effects of the native protein ligand on the receptor dynamics. Our results show that, in general, existing small-molecule inhibitors of protein-protein interactions do not optimally mimic protein-ligand hot spots, nor do they effectively engage protein receptor hot spots. The more effective use of hot spots in future drug design efforts may result in smaller compounds with higher ligand efficiencies that may lead to greater success in clinical trials.

  12. Criticality and Induction Time of Hot Spots in Detonating Heterogeneous Explosives

    NASA Astrophysics Data System (ADS)

    Hill, Larry

    2017-06-01

    Detonation reaction in physically heterogeneous explosives is-to an extent that depends on multiple material attributes-likewise heterogeneous. Like all heterogeneous reaction, detonation heterogeneous reaction begins at nucleation sites, which, in this case, comprise localized regions of higher-than-average temperature-so-called hot spots. Burning grows at, and then spreads from these nucleation sites, via reactive-thermal (R-T) waves, to consume the interstitial material. Not all hot spots are consequential, but only those that are 1) supercritical, and 2) sufficiently so as to form R-T waves before being consumed by those already emanating from neighboring sites. I explore aspects of these two effects by deriving simple formulae for hot spot criticality and the induction time of supercritical hot spots. These results serve to illustrate the non-intuitive, yet mathematically simplifying, effects of extreme dependence of reaction rate upon temperature. They can play a role in the development of better reactive burn models, for which we seek to homogenize the essentials of heterogeneous detonation reaction without introducing spurious complexity. Work supported by the US Dept. of Energy.

  13. Drilling confirms hot-spot origins

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Not Available

    1978-02-01

    Eleven holes were drilled at 4 sites in the Emperor Seamount chain in order to test the hot-spot hypothesis of the origin of the Hawaiian and Emperor chains and several important corollaries. Basalt was penetrated at 3 sites, and the paleontological ages of the lowest sediments above basalt are consistent with a linear geochron connecting the ages of Meiji Seamount to the north, and Koko and Yuryaku seamounts to the south. The chemical composition of the upper 4 basalt flow units cored at Ojin Seamount indicates that they are typical Hawaiites. A sample of tholeiite was recovered from the bottommore » of the hole. The lava flows from Ojin, Nintoku, and Suiko have natural remanent magnetization that is relatively stable to alternating field demagnetization, as expected of oceanic-island basalts. Many of the basalts at all 3 sites have highly vesicular and oxidized flow tops and bottoms. Observations indicate that the flows were erupted subaerially, and that Ojin, Nintoku, and Suiko volcanoes once stood well above sea level. In a general way, the hot-spot origin of the Emperor Seamount chain was confirmed. (JGB)« less

  14. Hot Spots and Hot Moments of Nitrogen in a Riparian Corridor

    NASA Astrophysics Data System (ADS)

    Dwivedi, Dipankar; Arora, Bhavna; Steefel, Carl I.; Dafflon, Baptiste; Versteeg, Roelof

    2018-01-01

    We use 3-D high-resolution reactive transport modeling to investigate whether the spatial distribution of organic-carbon-rich and chemically reduced sediments located in the riparian zone and temporal variability in groundwater flow direction impact the formation and distribution of nitrogen hot spots (regions that exhibit higher reaction rates when compared to other locations nearby) and hot moments (times that exhibit high reaction rates as compared to longer intervening time periods) within the Rifle floodplain in Colorado. Groundwater flows primarily toward the Colorado River from the floodplain but changes direction at times of high river stage. The result is that oxic river water infiltrates the Rifle floodplain during these relatively short-term events. Simulation results indicate that episodic rainfall in the summer season leads to the formation of nitrogen hot moments associated with Colorado River rise and resulting river infiltration into the floodplain. The results further demonstrate that the naturally reduced zones (NRZs) present in sediments of the Rifle floodplain have a higher potential for nitrate removal, approximately 70% greater than non-NRZs for typical hydrological conditions. During river water infiltration, nitrate reduction capacity remains the same within the NRZs, however, these conditions impact non-NRZs to a greater extent (approximately 95% less nitrate removal). Model simulations indicate chemolithoautotrophs are primarily responsible for the removal of nitrate in the Rifle floodplain. These nitrogen hot spots and hot moments are sustained by microbial respiration and the chemolithoautotrophic oxidation of reduced minerals in the riparian zone.

  15. Hot spot formation and stagnation properties in simulations of direct-drive NIF implosions

    NASA Astrophysics Data System (ADS)

    Schmitt, Andrew J.; Obenschain, Stephen P.

    2016-05-01

    We investigate different proposed methods of increasing the hot spot energy and radius in inertial confinement fusion implosions. In particular, shock mistiming (preferentially heating the inner edge of the target's fuel) and increasing the initial vapor gas density are investigated as possible control mechanisms. We find that only the latter is effective in substantially increasing the hot spot energy and dimensions while achieving ignition. In all cases an increase in the hot spot energy is accompanied by a decrease in the hot spot energy density (pressure) and both the yield and the gain of the target drop substantially. 2D simulations of increased vapor density targets predict an increase in the robustness of the target with respect to surface perturbations but are accompanied by significant yield degradation.

  16. Calculation of the fast ion tail distribution for a spherically symmetric hot spot

    NASA Astrophysics Data System (ADS)

    McDevitt, C. J.; Tang, X.-Z.; Guo, Z.; Berk, H. L.

    2014-10-01

    The fast ion tail for a spherically symmetric hot spot is computed via the solution of a simplified Fokker-Planck collision operator. Emphasis is placed on describing the energy scaling of the fast ion distribution function in the hot spot as well as the surrounding cold plasma throughout a broad range of collisionalities and temperatures. It is found that while the fast ion tail inside the hot spot is significantly depleted, leading to a reduction of the fusion yield in this region, a surplus of fast ions is observed in the neighboring cold plasma region. The presence of this surplus of fast ions in the neighboring cold region is shown to result in a partial recovery of the fusion yield lost in the hot spot.

  17. Absence of ras-gene hot-spot mutations in canine fibrosarcomas and melanomas.

    PubMed

    Murua Escobar, Hugo; Günther, Kathrin; Richter, Andreas; Soller, Jan T; Winkler, Susanne; Nolte, Ingo; Bullerdiek, Jörn

    2004-01-01

    Point mutations within ras proto-oncogenes, particularly within the mutational hot-spot codons 12, 13 and 61, are frequently detected in human malignancies and in different types of experimentally-induced tumours in animals. So far little is known about ras mutations in naturally occurring canine fibrosarcomas or K-ras mutations in canine melanomas. To elucidate whether ras mutations exist in these naturally occurring tumours in dogs, in the present study we screened 13 canine fibrosarcomas, 2 feline fibrosarcomas and 11 canine melanomas for point mutations, particularly within the mutational hot-spots, making this the first study to investigate a large number of canine fibrosarcomas. None of the samples showed a K- or N-ras hot spot mutation. Thus, our data strongly suggest that ras mutations at the hot-spot loci are very rare and do not play a major role in the pathogenesis of the spontaneously occurring canine tumours investigated.

  18. What controls the distribution and tectono-magmatic features of oceanic hot spot volcanoes

    NASA Astrophysics Data System (ADS)

    Acocella, Valerio; Vezzoli, Luigina

    2016-04-01

    Hot spot oceanic volcanoes worldwide show significant deviations from the classic Hawaiian reference model; these mainly concern the distribution of edifices and overall tectono-magmatic features, as the development of the volcanic rift zones and extent of flank instability. Here we try to explain these deviations investigating and comparing the best-known hot spot oceanic volcanoes. At a general scale, these volcanoes show an age-distance progression ranging from focused to scattered. This is here explained as due to several independent factors, as the thermal or mechanical weakening of the plate (due to the lithosphere thickness or regional structures, respectively), or the plume structure. At a more detailed scale, hot spot volcanoes show recurrent features, including mafic shield edifices with summit caldera and volcanic rift zones, often at the head of an unstable flank. However, despite this recurrence, a widespread tectono-magmatic variability is often found. Here we show how this variability depends upon the magma supply and age of the oceanic crust (influencing the thickness of the overlying pelagic sediments). Well-developed rift zones and larger collapses are found on hot spot volcanoes with higher supply rate and older crust, as Hawaii and Canary Islands. Poorly-developed rift zones and limited collapses occur on hot spot volcanoes with lower supply rate and younger crust, as Easter Island and Ascension. Transitional features are observed at hot spots with intermediate productivity (Cape Verde, Reunion, Society Islands and, to a minor extent, the Azores), whereas the scarcity or absence of pelagic sediments may explain the lack of collapses and developed rift zones in the productive Galapagos hot spot.

  19. Ion distribution in the hot spot of an inertial confinement fusion plasma

    NASA Astrophysics Data System (ADS)

    Tang, Xianzhu; Guo, Zehua; Berk, Herb

    2012-10-01

    Maximizing the fusion gain of inertial confinement fusion (ICF) for inertial fusion energy (IFE) applications leads to the standard scenario of central hot spot ignition followed by propagating burn wave through the cold/dense assembled fuel. The fact that the hot spot is surrounded by cold but dense fuel layer introduces subtle plasma physics which requires a kinetic description. Here we perform Fokker-Planck calculations and kinetic PIC simulations for an ICF plasma initially in pressure balance but having large temperature gradient over a narrow transition layer. The loss of the fast ion tail from the hot spot, which is important for fusion reactivity, is quantified by Fokker-Planck models. The role of electron energy transport and the ambipolar electric field is investigated via kinetic simulations and the fluid moment models. The net effect on both hot spot ion temperature and the ion tail distribution, and hence the fusion reactivity, is elucidated.

  20. Effects of Hot-Spot Geometry on Backscattering and Down-Scattering Neutron Spectra

    NASA Astrophysics Data System (ADS)

    Mohamed, Z. L.; Mannion, O. M.; Forrest, C. J.; Knauer, J. P.; Anderson, K. S.; Radha, P. B.

    2017-10-01

    The measured neutron spectrum produced by a fusion experiment plays a key role in inferring observable quantities. One important observable is the areal density of an implosion, which is inferred by measuring the scattering of neutrons. This project seeks to use particle-transport simulations to model the effects of hot-spot geometry on backscattering and down-scattering neutron spectra along different lines of sight. Implosions similar to those conducted at the Laboratory of Laser Energetics are modeled by neutron transport through a DT plasma and a DT ice shell using the particle transport codes MCNP and IRIS. Effects of hot-spot geometry are obtained by ``detecting'' scattered neutrons along different lines of sight. This process is repeated for various hot-spot geometries representing known shape distortions between the hot spot and the shell. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.

  1. Minimizing hot spot temperature in asymmetric gradient coil design.

    PubMed

    While, Peter T; Forbes, Larry K; Crozier, Stuart

    2011-08-01

    Heating caused by gradient coils is a considerable concern in the operation of magnetic resonance imaging (MRI) scanners. Hot spots can occur in regions where the gradient coil windings are closely spaced. These problem areas are particularly common in the design of gradient coils with asymmetrically located target regions. In this paper, an extension of an existing coil design method is described, to enable the design of asymmetric gradient coils with reduced hot spot temperatures. An improved model is presented for predicting steady-state spatial temperature distributions for gradient coils. A great amount of flexibility is afforded by this model to consider a wide range of geometries and system material properties. A feature of the temperature distribution related to the temperature gradient is used in a relaxed fixed point iteration routine for successively altering coil windings to have a lower hot spot temperature. Results show that significant reductions in peak temperature are possible at little or no cost to coil performance when compared to minimum power coils of equivalent field error.

  2. Disturbance Impacts on Thermal Hot Spots and Hot Moments at the Peatland-Atmosphere Interface

    NASA Astrophysics Data System (ADS)

    Leonard, R. M.; Kettridge, N.; Devito, K. J.; Petrone, R. M.; Mendoza, C. A.; Waddington, J. M.; Krause, S.

    2018-01-01

    Soil-surface temperature acts as a master variable driving nonlinear terrestrial ecohydrological, biogeochemical, and micrometeorological processes, inducing short-lived or spatially isolated extremes across heterogeneous landscape surfaces. However, subcanopy soil-surface temperatures have been, to date, characterized through isolated, spatially discrete measurements. Using spatially complex forested northern peatlands as an exemplar ecosystem, we explore the high-resolution spatiotemporal thermal behavior of this critical interface and its response to disturbances by using Fiber-Optic Distributed Temperature Sensing. Soil-surface thermal patterning was identified from 1.9 million temperature measurements under undisturbed, trees removed and vascular subcanopy removed conditions. Removing layers of the structurally diverse vegetation canopy not only increased mean temperatures but it shifted the spatial and temporal distribution, range, and longevity of thermal hot spots and hot moments. We argue that linking hot spots and/or hot moments with spatially variable ecosystem processes and feedbacks is key for predicting ecosystem function and resilience.

  3. A New Hot Spot on Northern Io

    NASA Image and Video Library

    2001-12-10

    In August 2001, NASA Galileo spacecraft has returned imagery of a hot spot on Jupiter moon Io that was the source of a towering plume indicating a sulfur-dioxide concentration that may have been fallout from the plume.

  4. High-temperature hot spots on Io as seen by the Galileo solid state imaging (SSI) experiment

    USGS Publications Warehouse

    McEwen, A.S.; Simonelli, D.P.; Senske, D.R.; Klaasen, K.P.; Keszthelyi, L.; Johnson, T.V.; Geissler, P.E.; Carr, M.H.; Belton, M.J.S.

    1997-01-01

    High-temperature hot spots on Io have been imaged at ???50 km spatial resolution by Galileo's CCD imaging system (SSI). Images were acquired during eclipses (Io in Jupiter's shadow) via the SSI clear filter (???0.4-1.0 ??m), detecting emissions from both small intense hot spots and diffuse extended glows associated with Io's atmosphere and plumes. A total of 13 hot spots have been detected over ???70% of Io's surface. Each hot spot falls precisely on a low-albedo feature corresponding to a caldera floor and/or lava flow. The hot-spot temperatures must exceed ???700 K for detection by SSI. Observations at wavelengths longer than those available to SSI require that most of these hot spots actually have significantly higher temperatures (???1000 K or higher) and cover small areas. The high-temperature hot spots probably mark the locations of active silicate volcanism, supporting suggestions that the eruption and near-surface movement of silicate magma drives the heat flow and volcanic activity of Io. Copyright 1997 by the American Geophysical Union.

  5. Short-lived and discontinuous intraplate volcanism in the South Pacific: Hot spots or extensional volcanism?

    NASA Astrophysics Data System (ADS)

    Koppers, Anthony A. P.; Staudigel, Hubert; Pringle, Malcolm S.; Wijbrans, Jan R.

    2003-10-01

    South Pacific intraplate volcanoes have been active since the Early Cretaceous. Their HIMU-EMI-EMII mantle sources can be traced back into the West Pacific Seamount Province (WPSP) using plate tectonic reconstructions, implying that these distinctive components are enduring features within the Earth's mantle for, at least, the last 120 Myr. These correlations are eminent on the scale of the WPSP and the South Pacific Thermal and Isotopic Anomaly (SOPITA), but the evolution of single hot spots emerges notably more complicated. Hot spots in the WPSP and SOPITA mantle regions typically display intermittent volcanic activity, longevities shorter than 40 Myr, superposition of hot spot volcanism, and motion relative to other hot spots. In this review, we use 40Ar/39Ar seamount ages and Sr-Nd-Pb isotopic signatures to map out Cretaceous volcanism in the WPSP and to characterize its evolution with respect to the currently active hot spots in the SOPITA region. Our plate tectonic reconstructions indicate cessation of volcanism during the Cretaceous for the Typhoon and Japanese hot spots; whereas the currently active Samoan, Society, Pitcairn and Marquesas hot spots lack long-lived counterparts in the WPSP. These hot spots may have become active during the last 20 Myr only. The other WPSP seamount trails can be only "indirectly" reconciled with hot spots in the SOPITA region. Complex age distributions in the Magellan, Anewetak, Ralik and Ratak seamount trails would necessitate the superposition of multiple volcanic trails generated by the Macdonald, Rurutu and Rarotonga hot spots during the Cretaceous; whereas HIMU-type seamounts in the Southern Wake seamount trail would require 350-500 km of hot spot motion over the last 100 Myr following its origination along the Mangaia-Rurutu "hotline" in the Cook-Austral Islands. These observations, however, violate all assumptions of the classical Wilson-Morgan hot spot hypothesis, indicating that long-lived, deep and fixed mantle

  6. Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming.

    PubMed

    Chen, Ruoying; Zhang, Zhiwang; Wu, Di; Zhang, Peng; Zhang, Xinyang; Wang, Yong; Shi, Yong

    2011-01-21

    Protein-protein interactions are fundamentally important in many biological processes and it is in pressing need to understand the principles of protein-protein interactions. Mutagenesis studies have found that only a small fraction of surface residues, known as hot spots, are responsible for the physical binding in protein complexes. However, revealing hot spots by mutagenesis experiments are usually time consuming and expensive. In order to complement the experimental efforts, we propose a new computational approach in this paper to predict hot spots. Our method, Rough Set-based Multiple Criteria Linear Programming (RS-MCLP), integrates rough sets theory and multiple criteria linear programming to choose dominant features and computationally predict hot spots. Our approach is benchmarked by a dataset of 904 alanine-mutated residues and the results show that our RS-MCLP method performs better than other methods, e.g., MCLP, Decision Tree, Bayes Net, and the existing HotSprint database. In addition, we reveal several biological insights based on our analysis. We find that four features (the change of accessible surface area, percentage of the change of accessible surface area, size of a residue, and atomic contacts) are critical in predicting hot spots. Furthermore, we find that three residues (Tyr, Trp, and Phe) are abundant in hot spots through analyzing the distribution of amino acids. Copyright © 2010 Elsevier Ltd. All rights reserved.

  7. Urogenital schistosomiasis transmission on Unguja Island, Zanzibar: characterisation of persistent hot-spots.

    PubMed

    Pennance, Tom; Person, Bobbie; Muhsin, Mtumweni Ali; Khamis, Alipo Naim; Muhsin, Juma; Khamis, Iddi Simba; Mohammed, Khalfan Abdallah; Kabole, Fatma; Rollinson, David; Knopp, Stefanie

    2016-12-16

    Elimination of urogenital schistosomiasis transmission is a priority for the Zanzibar Ministry of Health. Preventative chemotherapy together with additional control interventions have successfully alleviated much of the disease burden. However, a persistently high Schistosoma haematobium prevalence is found in certain areas. Our aim was to characterise and evaluate these persistent "hot-spots" of transmission and reinfection in comparison with low-prevalence areas, to support the intervention planning for schistosomiasis elimination in Zanzibar. Prevalences of S. haematobium were annually determined by a single urine filtration in schoolchildren from 45 administrative areas (shehias) in Unguja in 2012, 2013 and 2014. Coverage data for biannual treatment with praziquantel were available from ministerial databases and internal surveys. Among the 45 shehias, five hot-spot (≥ 15 % prevalence) and two low-prevalence (≤ 5 %) shehias were identified and surveyed in mid-2014. Human-water contact sites (HWCSs) and the presence of S. haematobium-infected and uninfected Bulinus globosus, as well as safe water sources (SWSs) and their reliability in terms of water availability were determined and mapped. We found no major difference in the treatment coverage between persistent hot-spot and low-prevalence shehias. On average, there were considerably more HWCSs containing B. globosus in hot-spot than in low-prevalence shehias (n = 8 vs n = 2) and also more HWCSs containing infected B. globosus (n = 2 vs n = 0). There was no striking difference in the average abundance of SWSs in hot-spot and low-prevalence shehias (n = 45 vs n = 38) and also no difference when considering SWSs with a constant water supply (average: 62 % vs 62 %). The average number of taps with a constant water supply, however, was lower in hot-spot shehias (n = 7 vs n = 14). Average distances from schools to the nearest HWCS were considerably shorter in hot-spot shehias

  8. Alternative hot spot formation techniques using liquid deuterium-tritium layer inertial confinement fusion capsules

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Olson, R. E.; Leeper, R. J.

    2013-09-27

    The baseline DT ice layer inertial confinement fusion (ICF) ignition capsule design requires a hot spot convergence ratio of ~34 with a hot spot that is formed from DT mass originally residing in a very thin layer at the inner DT ice surface. In the present paper, we propose alternative ICF capsule designs in which the hot spot is formed mostly or entirely from mass originating within a spherical volume of DT vapor. Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts—the DT wetted hydrocarbon (CH) foam concept and the “fast formed liquid”more » (FFL) concept—are described and compared to simulations of standard DT ice layer capsules. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low vapor pressure (DT ice) and high vapor pressure (DT liquid) capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules are less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density, with a potentially improved robustness to low-mode x-ray flux asymmetry.« less

  9. How to Find a Planetary Hot Spot

    NASA Image and Video Library

    2010-10-19

    This graph of data from NASA Spitzer Space Telescope shows how astronomers located a hot spot on a distant gas planet named upsilon Andromedae b. Termed an exoplanet, it orbits a star beyond our sun, and whips around very closely to its star.

  10. Hot Spots from Generated Defects in HMX Crystals

    NASA Astrophysics Data System (ADS)

    Sorensen, Christian; Cummock, Nicholas; O'Grady, Caitlin; Gunduz, I. Emre; Son, Steven

    2017-06-01

    There are several hot spot initiation mechanisms that have been proposed. However, direct observation of shock or impact compression of these mechanisms at macroscopic scale in explosives is difficult. Phase contrast imaging (PCI) may be applied to these systems. Here, high-speed video was used to record optical spectrum and for x-ray Phase Contrast Imaging (PCI) of shockwave interaction with low defect HMX crystals and crystals with engineered defects. Additionally, multiple crystals were arranged and observed under shock loading with PCI and optical high-speed video. Sample preparation techniques for generating voids and other engineered defects will be discussed. These methods include drilled holes and laser machined samples. Insight into hot spot mechanisms was obtained. Funding from ONR's PC@Xtreme MURI.

  11. Calculation methods study on hot spot stress of new girder structure detail

    NASA Astrophysics Data System (ADS)

    Liao, Ping; Zhao, Renda; Jia, Yi; Wei, Xing

    2017-10-01

    To study modeling calculation methods of new girder structure detail's hot spot stress, based on surface extrapolation method among hot spot stress method, a few finite element analysis models of this welded detail were established by finite element software ANSYS. The influence of element type, mesh density, different local modeling methods of the weld toe and extrapolation methods was analyzed on hot spot stress calculation results at the toe of welds. The results show that the difference of the normal stress in the thickness direction and the surface direction among different models is larger when the distance from the weld toe is smaller. When the distance from the toe is greater than 0.5t, the normal stress of solid models, shell models with welds and non-weld shell models tends to be consistent along the surface direction. Therefore, it is recommended that the extrapolated point should be selected outside the 0.5t for new girder welded detail. According to the results of the calculation and analysis, shell models have good grid stability, and extrapolated hot spot stress of solid models is smaller than that of shell models. So it is suggested that formula 2 and solid45 should be carried out during the hot spot stress extrapolation calculation of this welded detail. For each finite element model under different shell modeling methods, the results calculated by formula 2 are smaller than those of the other two methods, and the results of shell models with welds are the largest. Under the same local mesh density, the extrapolated hot spot stress decreases gradually with the increase of the number of layers in the thickness direction of the main plate, and the variation range is within 7.5%.

  12. Shock Initiation of Explosives - High Temperature Hot Spots Explained

    NASA Astrophysics Data System (ADS)

    Bassett, Will

    2017-06-01

    The pore-collapse mechanism for hot spot creation is currently one of the most intensely studied subjects in the initiation of energetic materials. In the present study, we use 1.5 - 3.5 km s-1 laser-driven flyer plates to impact microgram charges of both polymer-bound and pure pentaerythritol tetranitrate (PETN) while recording the temperature and spatially-averaged emissivity with a high-speed optical pyrometer. The 32-color pyrometer has nanosecond time resolution and a high dynamic range with sensitivity to temperatures from 7000 to 2000 K. Hot spot temperatures of 4000 K at impact are observed in the polymer-bound explosive charges where an elastomeric binder is used to fill void spaces. In pure PETN and more heterogeneous polymer-bound charges, in which significant void space is present, hot spot temperatures of 6000 K are observed, similar to previous reports with significant porosity. We attribute these high temperatures to gas-phase products formed in-situ being compressed under the driving shock. Experiments performed under various gas environments (air, butane, etc.) showed a strong influence on observed temperature upon impact. Control experiments where the PETN in the polymer-bound charges were replaced with sucrose and silica reinforce the result that hot spots are a result of in-situ gas formation from decomposition of organic molecules. US Air Force Office of Scientific Research awards FA9550-14-1-0142 and FA9550-16-1-0042; US Army Research Office award W911NF-13-1-0217; Defense Threat Reduction Agency award HDTRA1-12-1-0011. In collaboration with: Belinda Pacheco and Dana Dlott, University of Illinois at Urbana Champaign.

  13. Analytical modeling of the temporal evolution of hot spot temperatures in silicon solar cells

    NASA Astrophysics Data System (ADS)

    Wasmer, Sven; Rajsrima, Narong; Geisemeyer, Ino; Fertig, Fabian; Greulich, Johannes Michael; Rein, Stefan

    2018-03-01

    We present an approach to predict the equilibrium temperature of hot spots in crystalline silicon solar cells based on the analysis of their temporal evolution right after turning on a reverse bias. For this end, we derive an analytical expression for the time-dependent heat diffusion of a breakdown channel that is assumed to be cylindrical. We validate this by means of thermography imaging of hot spots right after turning on a reverse bias. The expression allows to be used to extract hot spot powers and radii from short-term measurements, targeting application in inline solar cell characterization. The extracted hot spot powers are validated at the hands of long-term dark lock-in thermography imaging. Using a look-up table of expected equilibrium temperatures determined by numerical and analytical simulations, we utilize the determined hot spot properties to predict the equilibrium temperatures of about 100 industrial aluminum back-surface field solar cells and achieve a high correlation coefficient of 0.86 and a mean absolute error of only 3.3 K.

  14. Hot spot mix in ICF implosions on the NIF

    NASA Astrophysics Data System (ADS)

    Ma, Tammy

    2016-10-01

    In the quest to achieve ignition through the inertial confinement fusion scheme, one of the critical challenges is to drive a symmetric implosion at high velocity without hydrodynamic instabilities becoming detrimental. These instabilities, primarily at the ablation front and the fuel-ablator interface, can cause mix of the higher-Z shell into the hot spot, resulting in increased radiation loss and thus reduced temperature and neutron yield. To quantify the level of mix, we developed a model that infers the level of hot spot contamination using the ratio of the enhanced x-ray production relative to the neutron yield. Applying this methodology to the full ensemble of indirect-drive National Ignition Facility (NIF) cryogenically layered DT implosions provides insight on the sensitivity of performance to the level of ablator-hot spot mix. In particular, the improvement seen with the High Foot design can be primarily attributed to a reduction in ablation-front instability mix that enabled the implosions to be pushed to higher velocity and performance. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344, Lawrence Livermore National Security, LLC.

  15. A Pulsating X-Ray Hot Spot on Jupiter

    NASA Technical Reports Server (NTRS)

    Gladstone, G. R.; Waite, J. H.; Grodent, D. C.; Crary, F. J.; Elsner, R. F.; Weisskopf, M. C.; Majeed, T.; Lewis, W. S.; Jahn, J.-M.; Bhardwaj, A.; hide

    2001-01-01

    Previous observations of jovian auroral x-ray emissions provided limited spectral information and extensive but low spatial resolution images. These emissions have been thought to result from charge exchange and excitation of energetic sulfur and oxygen ions precipitating from the outer edge of the Io Plasma Torus; bremsstrahlung emission from precipitating energetic electrons is too inefficient to produce the x-ray emissions. However, new high spatial resolution observations demonstrate that most of Jupiter's northern auroral x-rays come from a hot spot located much further north than the footprint of the Io Plasma Torus and which is even poleward of the main ultraviolet auroral oval. The hot spot appears fixed in magnetic latitude and longitude and occurs in a region where anomalous infrared and ultraviolet emissions have also been observed. Interestingly, the hot spot x-rays pulsate with an approximately 40-minute period, a period similar to that reported for high-latitude radio and energetic electron bursts observed by near-Jupiter spacecraft. These results invalidate the idea that jovian x-ray emissions are mainly excited by steady precipitation of energetic heavy ions from the region of the Io Plasma Torus. Instead, the x-rays appear to result from currently unexplained processes in the outer magnetosphere that produce highly localized and highly variable emissions over an extremely wide range of wavelengths.

  16. Alternative hot spot formation techniques using liquid deuterium-tritium layer inertial confinement fusion capsules

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Olson, R. E.; Leeper, R. J.

    2013-09-15

    The baseline DT ice layer inertial confinement fusion (ICF) ignition capsule design requires a hot spot convergence ratio of ∼34 with a hot spot that is formed from DT mass originally residing in a very thin layer at the inner DT ice surface. In the present paper, we propose alternative ICF capsule designs in which the hot spot is formed mostly or entirely from mass originating within a spherical volume of DT vapor. Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts—the DT wetted hydrocarbon (CH) foam concept and the “fast formed liquid”more » (FFL) concept—are described and compared to simulations of standard DT ice layer capsules. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low vapor pressure (DT ice) and high vapor pressure (DT liquid) capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules are less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density, with a potentially improved robustness to low-mode x-ray flux asymmetry.« less

  17. Enceladus' Geysers and Small-scale Thermal Hot Spots: Spatial Correlations and Implications

    NASA Astrophysics Data System (ADS)

    Porco, C.; Helfenstein, P.; Goguen, J.

    2016-12-01

    The geysering south polar terrain (SPT) of Enceladus has been a major focus of the Cassini mission ever since Cassini's first sighting of it in images taken in early 2005 (1). A high resolution imaging survey of the region conducted over the course of seven years resulted in the identification of 100 geysers erupting from the four main fractures crossing the SPT (2). The Cassini Visual and Infrared Mapping Spectrometer (VIMS) detected enhanced thermal emission arising from these fractures and taking the form of small-scale ( ≤ 10 meter) discrete spots (3,4). Four of these hot spot observations have already been spatially associated with four geysers on the Baghdad Sulcus fracture (2). The inferred spatial correlation and small size of each hot spot eliminated shear heating along the near-surface walls of the fractures as the source of the heat and erupting materials. Instead, it was concluded that condensation of vapor (and liquid), and the deposition of latent heat, on the near-surface vent walls, and the subsequent conduction of that heat to the surface, was the source of the observed thermal emission. This indicated that the hot spots are the secondary signature of a geyser eruption process deeply rooted in the moon's sub-surface liquid water reservoir (2). We extend the examination of these relationships to include seven additional VIMS observations of hot spots. At the present time, we have associated a total of 11 VIMS hot spot observations with 13 (maybe 14) geysers distributed over all four tiger stripe fractures. It's not uncommon for the locations of multiple (often two but sometimes three) surveyed geysers to overlap within estimated uncertainties. This can occur when they have different 3D orientations, making them identifiable in our 2014 survey as distinct features; However, the raw, thermally unmodeled VIMS maps, with their (relatively) coarse resolution, may register at that location only one corresponding hot spot. It is also possible that

  18. Hot Accretion Spots and Nitrogen Enhancement in Algol-Type Interacting Binary Systems

    NASA Astrophysics Data System (ADS)

    Peters, Geraldine J.

    2013-07-01

    The shock from the impact of a gas stream onto the photosphere of a mass gainer in an Algol system is expected to produce a hot spot and also heat circumstellar material that is splashed from the impact site. Furthermore in some cases we expect the stripped-down mass loser (a late-type subgiant) to be nitrogen rich and carbon poor if CNO-processed material is currently being transferred. I will present observational evidence from the Kepler and FUSE spacecrafts for the presence of hot spots and discuss their behavior. FUSE observations of Algols that convincingly show that the gas stream material from some Algol secondaries is N-enhanced and virtually devoid of carbon is also presented. From Kepler data we have identified a long-term phenomenon in which the relative brightness of the quadrature light varies by a few percent and numerically reverses over a time scale of about a 100-400 days. We call the systems T/L (trailing hemisphere/leading hemisphere) variables. Such behavior has never been identified from ground-based photometry. WX Draconis (A8 + K0 IV, P = 1.80 d), a system whose primary displays delta Scuti-like pulsations, is the prototype. The Kepler light curves are being modeled with the latest version of the Wilson-Devinney program that includes the capability of treating migrating hot/cool spots. I will discuss whether the T/L behavior is likely due to a migrating hot accretion spot on the primary or variability in a large cool-spotted area on the secondary. From archival FUSE data we have confirmed the presence of a hot accretion spot in the Algol system U Cephei and present information on the spot parameters/behavior and conditions in a splash plasma from the impact site. Kepler and archival FUSE observations continue to provide important information on the nature of the component stars in Algol systems and the detailed physics of mass transfer, especially the role of accretion hot spots. We are grateful for support from NASA grants NNX11AC78G and

  19. Chemical markers of possible hot spots on Mars

    NASA Astrophysics Data System (ADS)

    Wong, Ah-San; Atreya, Sushil K.; Encrenaz, Thérèse

    2003-04-01

    Although there is no evidence of active volcanism on Mars today, ``localized'' outgassing sources, the hot spots, may not be ruled out. If outgassing does occur somewhere on Mars, water, carbon dioxide, sulfur species, methane, and to a lesser extent, halogens would be the likely molecules of outgassing, based on terrestrial analogs. The sulfur species, methane, and halogens have not been detected in the Martian atmosphere, but the observations were averaged over large areas, which could result in substantial dilution in abundances. If the interpretation of certain Mars Global Surveyor images indicating recent ground water seepage and surface runoff [Malin and Edgett, 2000] is correct, it may imply that Mars could still be active internally in some places from time to time, and outgassing of the abovementioned species may occur with or without the water seepage. Moreover, if the tentative detection of formaldehyde (CH2O) in the equatorial region of Mars [Korablev et al., 1993] is confirmed by future observations, it would imply at least local outgassing of methane, whose oxidation results in the formation of CH2O. Considering the possibility of outgassing from some localized hot spots, we have developed a one-dimensional photochemical model that includes methane (CH4), sulfur dioxide (SO2), and hydrogen sulfide (H2S), starting with their current ``global average'' upper limits of 0.02, 0.1, and 0.1 ppm at the surface, respectively, and then progressively increasing their abundances above possible hot spots. We find that the introduction of methane into the Martian atmosphere results in the formation of mainly formaldehyde, methyl alcohol (CH3OH), and ethane (C2H6), whereas the introduction of the sulfur species produces mainly sulfur monoxide (SO) and sulfuric acid (H2SO4). The effect of outgassed halogens on the Martian atmosphere is found to be negligible. Depending upon the flux of outgassed molecules from possible hot spots, some of these species and the

  20. Determination of hot-spot susceptibility of multistring photovoltaic modules in a central-station application

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.; Weaver, R. W.; Ross, R. G., Jr.; Spencer, R.; Arnett, J. C.

    1984-01-01

    Part of the effort of the Jet Propulsion Laboratory (JPL) Flat-Plate Solar Array Project (FSA) includes a program to improve module and array reliability. A collaborative activity with industry dealing with the problem of hot-spot heating due to the shadowing of photovoltaic cells in modules and arrays containing several paralleled cell strings is described. The use of multiparallel strings in large central-station arrays introduces the likelihood of unequal current sharing and increased heating levels. Test results that relate power dissipated, current imbalance, cross-strapping frequency, and shadow configuration to hot-spot heating levels are presented. Recommendations for circuit design configurations appropriate to central-station applications that reduce the risk of hot-spot problems are offered. Guidelines are provided for developing hot-spot tests for arrays when current imbalance is a threat.

  1. Tunable subwavelength hot spot of dipole nanostructure based on VO2 phase transition.

    PubMed

    Park, Jun-Bum; Lee, Il-Min; Lee, Seung-Yeol; Kim, Kyuho; Choi, Dawoon; Song, Eui Young; Lee, Byoungho

    2013-07-01

    We propose a novel approach to generate and tune a hot spot in a dipole nanostructure of vanadium dioxide (VO2) laid on a gold (Au) substrate. By inducing a phase transition of the VO2, the spatial and spectral distributions of the hot spot generated in the feed gap of the dipole can be tuned. Our numerical simulation based on a finite-element method shows a strong intensity enhancement difference and tunability near the wavelength of 678 nm, where the hot spot shows 172-fold intensity enhancement when VO2 is in the semiconductor phase. The physical mechanisms of forming the hot spots at the two-different phases are discussed. Based on our analysis, the effects of geometric parameters in our dipole structure are investigated with an aim of enhancing the intensity and the tunability. We hope that the proposed nanostructure opens up a practical approach for the tunable near-field nano-photonic devices.

  2. Ignition conditions relaxation for central hot-spot ignition with an ion-electron non-equilibrium model

    NASA Astrophysics Data System (ADS)

    Fan, Zhengfeng; Liu, Jie

    2016-10-01

    We present an ion-electron non-equilibrium model, in which the hot-spot ion temperature is higher than its electron temperature so that the hot-spot nuclear reactions are enhanced while energy leaks are considerably reduced. Theoretical analysis shows that the ignition region would be significantly enlarged in the hot-spot rhoR-T space as compared with the commonly used equilibrium model. Simulations show that shocks could be utilized to create and maintain non-equilibrium conditions within the hot spot, and the hot-spot rhoR requirement is remarkably reduced for achieving self-heating. In NIF high-foot implosions, it is observed that the x-ray enhancement factors are less than unity, which is not self-consistent and is caused by assuming Te =Ti. And from this non-consistency, we could infer that ion-electron non-equilibrium exists in the high-foot implosions and the ion temperature could be 9% larger than the equilibrium temperature.

  3. 75 FR 29537 - Draft Transportation Conformity Guidance for Quantitative Hot-spot Analyses in PM2.5

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-26

    ... Quantitative Hot- spot Analyses in PM 2.5 and PM 10 Nonattainment and Maintenance Areas AGENCY: Environmental... finalized, this guidance would help state and local agencies complete quantitative PM 2.5 and PM 10 hot-spot...), EPA stated that quantitative PM 2.5 and PM 10 hot-spot analyses would not be required until EPA...

  4. Jovian longitudinal asymmetry in Io-related and Europa-related auroral hot spots

    NASA Technical Reports Server (NTRS)

    Dessler, A. J.; Chamberlain, J. W.

    1979-01-01

    Auroral emissions generated by the Jovian moons Io and Europa, originating at the foot of the magnetic flux tubes of the satellites, may be largely limited to longitudes where the planet's ionospheric conductivity is enhanced. The enhanced conductivity is produced by trapped energetic electrons that drift into the Jovian atmosphere in regions where the planet's magnetic field is anomalously weak. The most active auroral hot-spot emissions lie in a sector of the northern hemisphere defined by decametric radio emission. Weaker auroral hot spots are found in the southern hemisphere along a magnetic conjugate trace. The brightness and the longitude of the Jovian hot spots predicted in this paper are in agreement with observations reported by Atreya et al. (1977).

  5. Detecting fluorescence hot-spots using mosaic maps generated from multimodal endoscope imaging

    NASA Astrophysics Data System (ADS)

    Yang, Chenying; Soper, Timothy D.; Seibel, Eric J.

    2013-03-01

    Fluorescence labeled biomarkers can be detected during endoscopy to guide early cancer biopsies, such as high-grade dysplasia in Barrett's Esophagus. To enhance intraoperative visualization of the fluorescence hot-spots, a mosaicking technique was developed to create full anatomical maps of the lower esophagus and associated fluorescent hot-spots. The resultant mosaic map contains overlaid reflectance and fluorescence images. It can be used to assist biopsy and document findings. The mosaicking algorithm uses reflectance images to calculate image registration between successive frames, and apply this registration to simultaneously acquired fluorescence images. During this mosaicking process, the fluorescence signal is enhanced through multi-frame averaging. Preliminary results showed that the technique promises to enhance the detectability of the hot-spots due to enhanced fluorescence signal.

  6. Resolving hot spot microstructure using x-ray penumbral imaging (invited)

    NASA Astrophysics Data System (ADS)

    Bachmann, B.; Hilsabeck, T.; Field, J.; Masters, N.; Reed, C.; Pardini, T.; Rygg, J. R.; Alexander, N.; Benedetti, L. R.; Döppner, T.; Forsman, A.; Izumi, N.; LePape, S.; Ma, T.; MacPhee, A. G.; Nagel, S.; Patel, P.; Spears, B.; Landen, O. L.

    2016-11-01

    We have developed and fielded x-ray penumbral imaging on the National Ignition Facility in order to enable sub-10 μm resolution imaging of stagnated plasma cores (hot spots) of spherically shock compressed spheres and shell implosion targets. By utilizing circular tungsten and tantalum apertures with diameters ranging from 20 μm to 2 mm, in combination with image plate and gated x-ray detectors as well as imaging magnifications ranging from 4 to 64, we have demonstrated high-resolution imaging of hot spot plasmas at x-ray energies above 5 keV. Here we give an overview of the experimental design criteria involved and demonstrate the most relevant influences on the reconstruction of x-ray penumbral images, as well as mitigation strategies of image degrading effects like over-exposed pixels, artifacts, and photon limited source emission. We describe experimental results showing the advantages of x-ray penumbral imaging over conventional Fraunhofer and photon limited pinhole imaging and showcase how internal hot spot microstructures can be resolved.

  7. Resolving hot spot microstructure using x-ray penumbral imaging (invited).

    PubMed

    Bachmann, B; Hilsabeck, T; Field, J; Masters, N; Reed, C; Pardini, T; Rygg, J R; Alexander, N; Benedetti, L R; Döppner, T; Forsman, A; Izumi, N; LePape, S; Ma, T; MacPhee, A G; Nagel, S; Patel, P; Spears, B; Landen, O L

    2016-11-01

    We have developed and fielded x-ray penumbral imaging on the National Ignition Facility in order to enable sub-10 μm resolution imaging of stagnated plasma cores (hot spots) of spherically shock compressed spheres and shell implosion targets. By utilizing circular tungsten and tantalum apertures with diameters ranging from 20 μm to 2 mm, in combination with image plate and gated x-ray detectors as well as imaging magnifications ranging from 4 to 64, we have demonstrated high-resolution imaging of hot spot plasmas at x-ray energies above 5 keV. Here we give an overview of the experimental design criteria involved and demonstrate the most relevant influences on the reconstruction of x-ray penumbral images, as well as mitigation strategies of image degrading effects like over-exposed pixels, artifacts, and photon limited source emission. We describe experimental results showing the advantages of x-ray penumbral imaging over conventional Fraunhofer and photon limited pinhole imaging and showcase how internal hot spot microstructures can be resolved.

  8. Multiphysics Simulations of Hot-Spot Initiation in Shocked Insensitive High-Explosive

    NASA Astrophysics Data System (ADS)

    Najjar, Fady; Howard, W. M.; Fried, L. E.

    2010-11-01

    Solid plastic-bonded high-explosive materials consist of crystals with micron-sized pores embedded. Under mechanical or thermal insults, these voids increase the ease of shock initiation by generating high-temperature regions during their collapse that might lead to ignition. Understanding the mechanisms of hot-spot initiation has significant research interest due to safety, reliability and development of new insensitive munitions. Multi-dimensional high-resolution meso-scale simulations are performed using the multiphysics software, ALE3D, to understand the hot-spot initiation. The Cheetah code is coupled to ALE3D, creating multi-dimensional sparse tables for the HE properties. The reaction rates were obtained from MD Quantum computations. Our current predictions showcase several interesting features regarding hot spot dynamics including the formation of a "secondary" jet. We will discuss the results obtained with hydro-thermo-chemical processes leading to ignition growth for various pore sizes and different shock pressures.

  9. Prediction of hot spots in protein interfaces using a random forest model with hybrid features.

    PubMed

    Wang, Lin; Liu, Zhi-Ping; Zhang, Xiang-Sun; Chen, Luonan

    2012-03-01

    Prediction of hot spots in protein interfaces provides crucial information for the research on protein-protein interaction and drug design. Existing machine learning methods generally judge whether a given residue is likely to be a hot spot by extracting features only from the target residue. However, hot spots usually form a small cluster of residues which are tightly packed together at the center of protein interface. With this in mind, we present a novel method to extract hybrid features which incorporate a wide range of information of the target residue and its spatially neighboring residues, i.e. the nearest contact residue in the other face (mirror-contact residue) and the nearest contact residue in the same face (intra-contact residue). We provide a novel random forest (RF) model to effectively integrate these hybrid features for predicting hot spots in protein interfaces. Our method can achieve accuracy (ACC) of 82.4% and Matthew's correlation coefficient (MCC) of 0.482 in Alanine Scanning Energetics Database, and ACC of 77.6% and MCC of 0.429 in Binding Interface Database. In a comparison study, performance of our RF model exceeds other existing methods, such as Robetta, FOLDEF, KFC, KFC2, MINERVA and HotPoint. Of our hybrid features, three physicochemical features of target residues (mass, polarizability and isoelectric point), the relative side-chain accessible surface area and the average depth index of mirror-contact residues are found to be the main discriminative features in hot spots prediction. We also confirm that hot spots tend to form large contact surface areas between two interacting proteins. Source data and code are available at: http://www.aporc.org/doc/wiki/HotSpot.

  10. Protein binding hot spots prediction from sequence only by a new ensemble learning method.

    PubMed

    Hu, Shan-Shan; Chen, Peng; Wang, Bing; Li, Jinyan

    2017-10-01

    Hot spots are interfacial core areas of binding proteins, which have been applied as targets in drug design. Experimental methods are costly in both time and expense to locate hot spot areas. Recently, in-silicon computational methods have been widely used for hot spot prediction through sequence or structure characterization. As the structural information of proteins is not always solved, and thus hot spot identification from amino acid sequences only is more useful for real-life applications. This work proposes a new sequence-based model that combines physicochemical features with the relative accessible surface area of amino acid sequences for hot spot prediction. The model consists of 83 classifiers involving the IBk (Instance-based k means) algorithm, where instances are encoded by important properties extracted from a total of 544 properties in the AAindex1 (Amino Acid Index) database. Then top-performance classifiers are selected to form an ensemble by a majority voting technique. The ensemble classifier outperforms the state-of-the-art computational methods, yielding an F1 score of 0.80 on the benchmark binding interface database (BID) test set. http://www2.ahu.edu.cn/pchen/web/HotspotEC.htm .

  11. Hot spot heat transfer - Its application to Venus and implications to Venus and earth

    NASA Technical Reports Server (NTRS)

    Morgan, P.; Phillips, R. J.

    1983-01-01

    Using a model that gives a relationship between surface elevation, lithospheric thickness, and heat flux, the hot spot heat loss mechanism is tested for Venus. The mechanism is found to readily explain the predicted heat loss of the planet with a modest number of hot spots (of the order of 35). Lithospheric thickness variations can explain approximately 93 percent of the mapped topography of Venus. Above a radius of 6053 km, additional compensation is required, and this can be effected by incorporating a variable thickness crust into the model. If it is assumed that the crust is generated on the crests of the hot spots, probably by processes associated with volcanism, the model is consistent with nearly 99 percent of the mapped topography of Venus. In addition, the model is basically consistent with available gravity data and interpretations that suggest compensated topography and great depths of compensation (100-1000 km) for the midlatitudes of the planet. It is thought that the approximately 1 percent of the topography not explained by hot spot crustal generation is compensated at a shallower depth primarily by variations in crustal thickness that are not directly related to hot spot volcanism.

  12. Influence of hot spot features on the shock initiation of heterogenous nitromethane

    NASA Astrophysics Data System (ADS)

    Dattelbaum, Dana; Sheffield, Stephen; Stahl, David; Dattelbaum, Andrew

    2009-06-01

    The shock initiation sensitivity of heterogeneous explosives is known to be strongly related to the confluence of ``hot spots'' or localized regions of high pressure and temperature. Physical origins of hot spots within a material include dynamic pore collapse, friction from motion along closed cracks, and wave reflections from other in situ interfaces. A complex interplay among numerous physical and chemical factors, spanning several length scales, determines whether or not a hot spot will quench or lead to initiation. To further elucidate key features of hot spots on energetic materials sensitivity and initiation mechanisms, we have intentionally introduced well-defined particles into the homogeneous liquid explosive nitromethane which has been gelled so the particles are somewhat stationary. Gas-gun driven shock initiation experiments using embedded electromagnetic gauging methods have been performed on these materials, revealing new insights into the role of heterogeneities on the sensitivity of the explosives through shock input-to-run distance relationships (Pop-plots), and reactive chemistry growth in and behind the incident shock front. By logically mapping out these relationships, the data provide a scientific foundation for the development of predictive capabilities for modeling new formulations, and designing next-generation energetic materials.

  13. Chemical identifications of possible martian hot spots

    NASA Astrophysics Data System (ADS)

    Wong, A. S.; Atreya, S. K.; Renno, N. O.

    2003-04-01

    If the interpretation of certain Mars Global Surveyor images indicating recent ground water seepage and surface runoff (1) is correct, it may imply that Mars can still be active internally in some places from time to time, and outgassing of certain molecules from the interior could occur with or without the water seepage. Although there is no evidence of active volcanism on Mars today, ``localized'' outgassing sources, the ``hot spots'', may not be ruled out. If outgassing does occur somewhere on Mars, water, carbon dioxide, sulfur species, methane, and to a lesser extent, halogens, would be the likely molecules of outgassing, based on the terrestrial analogs. The sulfur species, methane and halogens have not been detected in the ``global'' observations of Mars. Considering the possibility of outgassing from some localized hot spots, we have developed a one-dimensional photochemical model (2) that includes methane (CH_4), sulfur dioxide (SO_2) and hydrogen sulfide (H_2S), starting with their current ``global average'' upper limits of, respectively, 0.02, 0.1 and 0.1 ppm at the surface, and then progressively increasing their abundances above possible hot spots. Halogens are neglected as they are a minor product of the terrestrial outgassing sources. We find that the introduction of methane into the martian atmosphere results in the formation of mainly formaldehyde, methyl alcohol (CH_3OH) and ethane (C_2H_6), whereas the introduction of the sulfur species produces mainly sulfur monoxide (SO) and sulfuric acid (H_2SO_4). In a relatively short time of an hour, ordinary convective processes alone can reduce the mixing ratios of outgassed species by factors of 10^4 -- 10^5 approximately 50 km from the source, and the time for spreading the source material more or less uniformly over the planet (with corresponding dilution factor of ˜10^8) would be approximately one year. Depending upon the flux of the outgassed molecules from possible hot spots, some of these species

  14. Lorenz curve and Gini coefficient reveal hot spots and hot moments for nitrous oxide emissions

    USDA-ARS?s Scientific Manuscript database

    Identifying hot spots and hot moments of N2O emissions in the landscape is critical for monitoring and mitigating the emission of this powerful greenhouse gas. We propose a novel use of the Lorenz curve and Gini coefficient (G) to quantify the heterogeneous distribution of N2O emissions from a lands...

  15. Investigating La Réunion Hot Spot From Crust to Core

    NASA Astrophysics Data System (ADS)

    Barruol, Guilhem; Sigloch, Karin

    2013-06-01

    Whether volcanic intraplate hot spots are underlain by deep mantle plumes continues to be debated 40 years after the hypothesis was proposed by Morgan [1972]. Arrivals of buoyant plume heads may have been among the most disruptive agents in Earth's history, initiating continental breakup, altering global climate, and triggering mass extinctions. Further, with the temporary shutdown of European air traffic in 2010 caused by the eruption of Eyjafjallajökull, a geologically routine eruption in the tail end of the presumed Iceland plume, the world witnessed an intrusion of hot spot activity into modern-day life.

  16. Powerful Radio Galaxies with Simbol-X: Lobes and Hot Spots

    NASA Astrophysics Data System (ADS)

    Migliori, G.; Grandi, P.; Angelini, L.; Raimondi, L.; Torresi, E.; Palumbo, G. G. C.

    2009-05-01

    We present here the first Simbol-X simulations of the extended components, lobes and hot spots, of the radio galaxies. We use the paradigmatic case of Pictor A to test the capabilities of Simbol-X in this field of studies. Simulations demonstrate that Simbol-X will be able not only to perform spatially resolved studies on the lobes of radio galaxies below 10 keV but also to observe, for the first time, hard X-ray emission from the hot spots. These extremely promising results show the considerable potentiality of Simbol-X in studying interaction phenomena between relativistic plasma and surrounding environment.

  17. There is no bidirectional hot-spot in Sentinel-2 data

    NASA Astrophysics Data System (ADS)

    Li, Z.; Roy, D. P.; Zhang, H.

    2017-12-01

    The Sentinel-2 multi-spectral instrument (MSI) acquires reflective wavelength observations with directional effects due to surface reflectance anisotropy, often described by the bidirectional reflectance distribution function (BRDF). Recently, we quantified Sentinel-2A (S2A) BRDF effects for 20° × 10° of southern Africa sensed in January and in April 2016 and found maximum BRDF effects for the January data and at the western scan edge, i.e., in the back-scatter direction (Roy et al. 2017). The hot-spot is the term used to describe the increased directional reflectance that occurs over most surfaces when the solar and viewing directions coincide, and has been observed in wide-field of view data such as MODIS. Recently, we observed that Landsat data will not have a hot-spot because the global annual minimum solar zenith angle is more than twice the maximum view zenith angle (Zhang et al. 2016). This presentation examines if there is a S2A hot-spot which may be possible as it has a wider field of view (20.6°) and higher orbit (786 km) than Landsat. We examined a global year of S2A metadata extracted using the Committee on Earth Observation Satellite Visualization Environment (COVE) tool, computed the solar zenith angles in the acquisition corners, and ranked the acquisitions by the solar zenith angle in the back-scatter direction. The available image data for the 10 acquisitions with the smallest solar zenith angle over the year were ordered from the ESA and their geometries examined in detail. The acquisition closest to the hot-spot had a maximum scattering angle of 173.61° on its western edge (view zenith angle 11.91°, solar zenith angle 17.97°) and was acquired over 60.80°W 24.37°N on June 2nd 2016. Given that hot-spots are only apparent when the scattering angle is close to 180° we conclude from this global annual analysis that there is no hot-spot in Sentinel-2 data. Roy, D.P, Li, J., Zhang, H.K., Yan, L., Huang, H., Li, Z., 2017, Examination of

  18. Content-based analysis of Ki-67 stained meningioma specimens for automatic hot-spot selection.

    PubMed

    Swiderska-Chadaj, Zaneta; Markiewicz, Tomasz; Grala, Bartlomiej; Lorent, Malgorzata

    2016-10-07

    Hot-spot based examination of immunohistochemically stained histological specimens is one of the most important procedures in pathomorphological practice. The development of image acquisition equipment and computational units allows for the automation of this process. Moreover, a lot of possible technical problems occur in everyday histological material, which increases the complexity of the problem. Thus, a full context-based analysis of histological specimens is also needed in the quantification of immunohistochemically stained specimens. One of the most important reactions is the Ki-67 proliferation marker in meningiomas, the most frequent intracranial tumour. The aim of our study is to propose a context-based analysis of Ki-67 stained specimens of meningiomas for automatic selection of hot-spots. The proposed solution is based on textural analysis, mathematical morphology, feature ranking and classification, as well as on the proposed hot-spot gradual extinction algorithm to allow for the proper detection of a set of hot-spot fields. The designed whole slide image processing scheme eliminates such artifacts as hemorrhages, folds or stained vessels from the region of interest. To validate automatic results, a set of 104 meningioma specimens were selected and twenty hot-spots inside them were identified independently by two experts. The Spearman rho correlation coefficient was used to compare the results which were also analyzed with the help of a Bland-Altman plot. The results show that most of the cases (84) were automatically examined properly with two fields of view with a technical problem at the very most. Next, 13 had three such fields, and only seven specimens did not meet the requirement for the automatic examination. Generally, the Automatic System identifies hot-spot areas, especially their maximum points, better. Analysis of the results confirms the very high concordance between an automatic Ki-67 examination and the expert's results, with a Spearman

  19. Gravitational Lensing Effect on the Two-Point Correlation of Hot Spots in the Cosmic Microwave Background.

    PubMed

    Takada; Komatsu; Futamase

    2000-04-20

    We investigate the weak gravitational lensing effect that is due to the large-scale structure of the universe on two-point correlations of local maxima (hot spots) in the two-dimensional sky map of the cosmic microwave background (CMB) anisotropy. According to the Gaussian random statistics, as most inflationary scenarios predict, the hot spots are discretely distributed, with some characteristic angular separations on the last scattering surface that are due to oscillations of the CMB angular power spectrum. The weak lensing then causes pairs of hot spots, which are separated with the characteristic scale, to be observed with various separations. We found that the lensing fairly smooths out the oscillatory features of the two-point correlation function of hot spots. This indicates that the hot spot correlations can be a new statistical tool for measuring the shape and normalization of the power spectrum of matter fluctuations from the lensing signatures.

  20. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.

    PubMed

    Liu, Qian; Ren, Jing; Song, Jiangning; Li, Jinyan

    2015-01-01

    A binding hot spot is a small area at a protein-protein interface that can make significant contribution to binding free energy. This work investigates the substantial contribution made by some special co-occurring atomic contacts at a binding hot spot. A co-occurring atomic contact is a pair of atomic contacts that are close to each other with no more than three covalent-bond steps. We found that two kinds of co-occurring atomic contacts can play an important part in the accurate prediction of binding hot spot residues. One is the co-occurrence of two nearby hydrogen bonds. For example, mutations of any residue in a hydrogen bond network consisting of multiple co-occurring hydrogen bonds could disrupt the interaction considerably. The other kind of co-occurring atomic contact is the co-occurrence of a hydrophobic carbon contact and a contact between a hydrophobic carbon atom and a π ring. In fact, this co-occurrence signifies the collective effect of hydrophobic contacts. We also found that the B-factor measurements of several specific groups of amino acids are useful for the prediction of hot spots. Taking the B-factor, individual atomic contacts and the co-occurring contacts as features, we developed a new prediction method and thoroughly assessed its performance via cross-validation and independent dataset test. The results show that our method achieves higher prediction performance than well-known methods such as Robetta, FoldX and Hotpoint. We conclude that these contact descriptors, in particular the novel co-occurring atomic contacts, can be used to facilitate accurate and interpretable characterization of protein binding hot spots.

  1. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots

    PubMed Central

    Liu, Qian; Ren, Jing; Song, Jiangning; Li, Jinyan

    2015-01-01

    A binding hot spot is a small area at a protein-protein interface that can make significant contribution to binding free energy. This work investigates the substantial contribution made by some special co-occurring atomic contacts at a binding hot spot. A co-occurring atomic contact is a pair of atomic contacts that are close to each other with no more than three covalent-bond steps. We found that two kinds of co-occurring atomic contacts can play an important part in the accurate prediction of binding hot spot residues. One is the co-occurrence of two nearby hydrogen bonds. For example, mutations of any residue in a hydrogen bond network consisting of multiple co-occurring hydrogen bonds could disrupt the interaction considerably. The other kind of co-occurring atomic contact is the co-occurrence of a hydrophobic carbon contact and a contact between a hydrophobic carbon atom and a π ring. In fact, this co-occurrence signifies the collective effect of hydrophobic contacts. We also found that the B-factor measurements of several specific groups of amino acids are useful for the prediction of hot spots. Taking the B-factor, individual atomic contacts and the co-occurring contacts as features, we developed a new prediction method and thoroughly assessed its performance via cross-validation and independent dataset test. The results show that our method achieves higher prediction performance than well-known methods such as Robetta, FoldX and Hotpoint. We conclude that these contact descriptors, in particular the novel co-occurring atomic contacts, can be used to facilitate accurate and interpretable characterization of protein binding hot spots. PMID:26675422

  2. Jovian longitudinal asymmetry in Io-related and Europa-related auroral hot spots

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dessler, A.J.; Chamberlain, J.W.

    1979-06-15

    Jupiter's internal magnetic field is markedly non-dipolar. We propose that Io- or Europa-generated auroral emissions (originating at the foot of either Io's or Europa's magnetic flux tube) are largely restricted to longitudes where Jupiter's ionospheric conductivity is enhanced. Trapped, energetic electrons that drift into Jupiter's atmosphere, in regions where the Jovian magnetic field is anomalously weak, produce the increased conductivity. The longitude range of enchanced auroral hot-spot emissions is thus restricted to an active sector that is determined from dekametric radio emission to lie in the northern hemisphere in the Jovian System III (1965) longitude range of 205/sup 0/ +-more » 30/sup 0/. Relatively weaker auroral hot spots should occur in the southern hemisphere along the mgnetic conjugate trace covering the longitude range of 215/sup 0/ +- 55/sup 0/. At other longitudes, the brightness of the hot spot should decrease by at least one order of magnitude. These results, with respect to both brightness and longitude, are in accord with the observations of Jovian auroral hot spots reported by Atreya et al. We show that the northern hemisphere foot of either Io's or Europa's magnetic flux tube was in the preferred longitude range (the active sector) at the time of each observation.« less

  3. Suppression of Aedes albopictus, the Asian tiger mosquito, using a 'hot spot' approach.

    PubMed

    Unlu, Isik; Klingler, Kim; Indelicato, Nicholas; Faraji, Ary; Strickman, Daniel

    2016-07-01

    Recent changes in climate and human behavior have led to dramatic increases in the abundance and geographic expansion of invasive mosquito vectors such as Aedes albopictus. Although source reduction has been shown to be effective in reducing mosquito populations, thousands of backyards need to be inspected during door-to-door campaigns, which is labor intensive and expensive. We identified 'hot spots' as high (five or more female or male Ae. albopictus) adult mosquito populations at very focal locations. We tested whether hot spot source reduction efforts were effective in reducing mosquito populations in the early summer season (June to July). Analysis of historical data from the study sites indicated the proportion of hot spots in the control site relative to the intervention site was much greater in 2011, when hot spot treatments were applied to the intervention site, than in 2012, 2013 and 2014 combined, when no sites were treated [OR (95% CI) = 3.9 (1.8, 8.5), Z = 3.39, P < 0.001). Hot spot treatments can be incorporated into existing integrated mosquito management programs to increase effectiveness while reducing the time, cost and effort spent on methods such as door-to-door source reduction. Published 2015. This article is a U.S. Government work and is in the public domain in the USA. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

  4. Hot-spot heating susceptibility due to reverse bias operating conditions

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.

    1985-01-01

    Because of field experience (indicating that cell and module degradation could occur as a result of hot spot heating), a laboratory test was developed at JPL to determine hot spot susceptibility of modules. The initial hot spot testing work at JPL formed a foundation for the test development. Test parameters are selected as follows. For high shunt resistance cells, the applied back bias test current is set equal to the test cell current at maximum power. For low shunt resistance cells, the test current is set equal to the cell short circuit current. The shadow level is selected to conform to that which would lead to maximum back bias voltage under the appropriate test current level. The test voltage is determined by the bypass diode frequency. The test conditions are meant to simulate the thermal boundary conditions for 100 mW/sq cm, 40C ambient environment. The test lasts 100 hours. A key assumption made during the development of the test is that no current imbalance results from the connecting of multiparallel cell strings. Therefore, the test as originally developed was applicable for single string case only.

  5. Smart SERS Hot Spots: Single Molecules Can Be Positioned in a Plasmonic Nanojunction Using Host-Guest Chemistry.

    PubMed

    Kim, Nam Hoon; Hwang, Wooseup; Baek, Kangkyun; Rohman, Md Rumum; Kim, Jeehong; Kim, Hyun Woo; Mun, Jungho; Lee, So Young; Yun, Gyeongwon; Murray, James; Ha, Ji Won; Rho, Junsuk; Moskovits, Martin; Kim, Kimoon

    2018-04-04

    Single-molecule surface-enhanced Raman spectroscopy (SERS) offers new opportunities for exploring the complex chemical and biological processes that cannot be easily probed using ensemble techniques. However, the ability to place the single molecule of interest reliably within a hot spot, to enable its analysis at the single-molecule level, remains challenging. Here we describe a novel strategy for locating and securing a single target analyte in a SERS hot spot at a plasmonic nanojunction. The "smart" hot spot was generated by employing a thiol-functionalized cucurbit[6]uril (CB[6]) as a molecular spacer linking a silver nanoparticle to a metal substrate. This approach also permits one to study molecules chemically reluctant to enter the hot spot, by conjugating them to a moiety, such as spermine, that has a high affinity for CB[6]. The hot spot can accommodate at most a few, and often only a single, analyte molecule. Bianalyte experiments revealed that one can reproducibly treat the SERS substrate such that 96% of the hot spots contain a single analyte molecule. Furthermore, by utilizing a series of molecules each consisting of spermine bound to perylene bisimide, a bright SERS molecule, with polymethylene linkers of varying lengths, the SERS intensity as a function of distance from the center of the hot spot could be measured. The SERS enhancement was found to decrease as 1 over the square of the distance from the center of the hot spot, and the single-molecule SERS cross sections were found to increase with AgNP diameter.

  6. Mean Streets and Mental Health: Depression and Post-Traumatic Stress Disorder at Crime Hot Spots.

    PubMed

    Weisburd, David; Cave, Breanne; Nelson, Matthew; White, Clair; Haviland, Amelia; Ready, Justin; Lawton, Brian; Sikkema, Kathleen

    2018-03-07

    This study explores the relationship between mental health and place at microgeographic units of analysis. We examine self-reported symptomology for depression and PTSD for 2,724 survey respondents interviewed in three types of randomly selected street segments: violent crime hot spots, cool spots, and cold spots. We find that the mean symptomology score is 61% higher for depression in violent crime hot spots than cold spots, and 85% higher for PTSD. Overall, we estimate that 14.8% of residents of violent crime hot spots meet thresholds for moderate depression or a diagnosis of PTSD. This can be compared to only 6.5% of residents at the cold spots. Using PSM and weighted negative binomial regression approaches we show that observable selection factors are not responsible for the relationships identified. Examining geographic influences, we find an important area effect of violent crime for both mental health measures, and an additional impact of the specific street of residence for PTSD. © Society for Community Research and Action 2018.

  7. Phenotyping at hot spots and tagging of QTLs conferring spot blotch resistance in bread wheat.

    PubMed

    Singh, Virender; Singh, Gyanendra; Chaudhury, A; Ojha, Ashish; Tyagi, B S; Chowdhary, A K; Sheoran, Sonia

    2016-11-01

    Spot blotch is a major foliar disease of wheat caused by Bipolaris sorokiniana in warm and humid environments of the world including South Asian countries. In India, it has a larger impact in Indo-Gangetic plains of the country. Therefore, the present study was undertaken to phenotype a mapping population at different hot spots of India and to detect quantitative trait loci (QTL) for resistance to spot blotch in wheat. For this study, 209 single seed descent (SSD) derived F 8 , F 9 , F 10 recombinant inbred lines (RILs) of the cross 'Sonalika' (an Indian susceptible cultivar)/'BH 1146' (a Brazilian resistant cultivar) were assessed for spot blotch resistance at two hot spot locations (Coochbehar and Kalyani) for three years and for two years under controlled conditions in the polyhouse (Karnal). The population showed large variation in spot blotch reaction for disease severity in all the environments indicating polygenic nature of the disease. Microsatellite markers were used to create the linkage maps. Joint and/or individual year analysis by composite interval mapping (CIM) and likelihood of odds ratio (LOD) >2.1, detected two consistent QTLs mapped on chromosome 7BL and 7DL and these explained phenotypic variation of 11.4 percent and 9.5 percent over the years and locations, respectively. The resistance at these loci was contributed by the parent 'BH 1146' and shown to be independent of plant height and earliness. Besides, association of some agro-morphological traits has also been observed with percent disease severity. These identified genomic regions may be used in future wheat breeding programs through marker assisted selection for developing spot blotch resistant cultivars.

  8. Cold Spots in Neonatal Incubators Are Hot Spots for Microbial Contamination▿

    PubMed Central

    de Goffau, Marcus C.; Bergman, Klasien A.; de Vries, Hendrik J.; Meessen, Nico E. L.; Degener, John E.; van Dijl, Jan Maarten; Harmsen, Hermie J. M.

    2011-01-01

    Thermal stability is essential for the survival and well-being of preterm neonates. This is achieved in neonatal incubators by raising the ambient temperature and humidity to sufficiently high levels. However, potentially pathogenic microorganisms also can thrive in such warm and humid environments. We therefore investigated whether the level of microbial contamination (i.e., the bacterial load) inside neonatal incubators can be predicted on the basis of their average temperature and relative humidity settings, paying special attention to local temperature differences. Swab samples were taken from the warmest and coldest spots found within Caleo incubators, and these were plated to determine the number of microbial CFU per location. In incubators with high average temperature (≥34°C) and relative humidity (≥60%) values, the level of microbial contamination was significantly higher at cold spots than at hot spots. This relates to the fact that the local equilibrium relative humidity at cold spots is sufficiently high to sustain microbial growth. The abundance of staphylococci, which are the main causative agents of late-onset sepsis in preterm neonates, was found to be elevated significantly in cold areas. These findings can be used to improve basic incubator hygiene. PMID:22003021

  9. The Nature, Number and Evolution of Hot-Spots in Ammonium Nitrate

    NASA Astrophysics Data System (ADS)

    Proud, W. G.; Kirby, I. J.; Field, J. E.

    2004-07-01

    Ammonium nitrate (AN) is a commonly used fertiliser and also one component of the most widely used explosive in the world AN: Fuel Oil mixtures. This study uses a combination of high-speed photography, UV/Visible spectroscopy and modelling. By using thin beds, <0.5 mm thick, with a porosity of 22%vol the number and evolution of hot-spots in ammonium nitrate are monitored directly under dynamic loading conditions. The critical conditions for ignition are defined in terms of energy localisation mechanisms, temperature rise and inter-communication between the hot-spots.

  10. High-resolution observations of radio-source hot spots at 329 MHz

    NASA Technical Reports Server (NTRS)

    Linfield, R.; Simon, R. S.

    1984-01-01

    The hot spots of several luminous double radio sources have been observed at 329 MHz with VLBI at fringe spacings ranging from 0.05 to 0.70 arcsec. Two out of two high-redshift (z = about 0.5) sources, but only one of six low-redshift (z = about 0.05) sources, were detected. For the low-redshift source (3C 234) which was detected, either the hot spot is larger at 329 MHz than at 15 GHz, or else the brightness contrast between it and the surrounding lobe is lower at the lower frequency.

  11. Climate impacts on global hot spots of marine biodiversity

    PubMed Central

    Ramírez, Francisco; Afán, Isabel; Davis, Lloyd S.; Chiaradia, André

    2017-01-01

    Human activities drive environmental changes at scales that could potentially cause ecosystem collapses in the marine environment. We combined information on marine biodiversity with spatial assessments of the impacts of climate change to identify the key areas to prioritize for the conservation of global marine biodiversity. This process identified six marine regions of exceptional biodiversity based on global distributions of 1729 species of fish, 124 marine mammals, and 330 seabirds. Overall, these hot spots of marine biodiversity coincide with areas most severely affected by global warming. In particular, these marine biodiversity hot spots have undergone local to regional increasing water temperatures, slowing current circulation, and decreasing primary productivity. Furthermore, when we overlapped these hot spots with available industrial fishery data, albeit coarser than our estimates of climate impacts, they suggest a worrying coincidence whereby the world’s richest areas for marine biodiversity are also those areas mostly affected by both climate change and industrial fishing. In light of these findings, we offer an adaptable framework for determining local to regional areas of special concern for the conservation of marine biodiversity. This has exposed the need for finer-scaled fishery data to assist in the management of global fisheries if the accumulative, but potentially preventable, effect of fishing on climate change impacts is to be minimized within areas prioritized for marine biodiversity conservation. PMID:28261659

  12. Climate impacts on global hot spots of marine biodiversity.

    PubMed

    Ramírez, Francisco; Afán, Isabel; Davis, Lloyd S; Chiaradia, André

    2017-02-01

    Human activities drive environmental changes at scales that could potentially cause ecosystem collapses in the marine environment. We combined information on marine biodiversity with spatial assessments of the impacts of climate change to identify the key areas to prioritize for the conservation of global marine biodiversity. This process identified six marine regions of exceptional biodiversity based on global distributions of 1729 species of fish, 124 marine mammals, and 330 seabirds. Overall, these hot spots of marine biodiversity coincide with areas most severely affected by global warming. In particular, these marine biodiversity hot spots have undergone local to regional increasing water temperatures, slowing current circulation, and decreasing primary productivity. Furthermore, when we overlapped these hot spots with available industrial fishery data, albeit coarser than our estimates of climate impacts, they suggest a worrying coincidence whereby the world's richest areas for marine biodiversity are also those areas mostly affected by both climate change and industrial fishing. In light of these findings, we offer an adaptable framework for determining local to regional areas of special concern for the conservation of marine biodiversity. This has exposed the need for finer-scaled fishery data to assist in the management of global fisheries if the accumulative, but potentially preventable, effect of fishing on climate change impacts is to be minimized within areas prioritized for marine biodiversity conservation.

  13. Raman spectroelectrochemistry of molecules within individual electromagnetic hot spots.

    PubMed

    Shegai, Timur; Vaskevich, Alexander; Rubinstein, Israel; Haran, Gilad

    2009-10-14

    The role of chemical enhancement in surface-enhanced Raman scattering (SERS) remains a contested subject. We study SERS spectra of 4-mercaptopyridine molecules excited far from the molecular resonance, which are collected from individual electromagnetic hot spots at concentrations close to the single-molecule limit. The hot spots are created by depositing Tollen's silver island films on a transparent electrode incorporated within an electrochemical cell. Analysis of the intensity of the spectra relative to those obtained from individual rhodamine 6G molecules on the same surface provides a lower limit of approximately 3 orders of magnitude for the chemical enhancement. This large enhancement is likely to be due to a charge transfer resonance involving the transfer of an electron from the metal to an adsorbed molecule. Excitation at three different wavelengths, as well as variation of electrode potential from 0 to -1.2 V, lead to significant changes in the relative intensities of bands in the spectrum. It is suggested that while the bulk of the enhancement is due to an Albrecht A-term resonance Raman effect (involving the charge transfer transition), vibronic coupling provides additional enhancement which is sensitive to electrode potential. The measurement of potential-dependent SERS spectra from individual hot spots opens the way to a thorough characterization of chemical enhancement, as well to studies of redox phenomena at the single-molecule level.

  14. Infrared sensor for hot spot recognition for a small satellite mission

    NASA Astrophysics Data System (ADS)

    Skrbek, W.; Bachmann, K.; Lorenz, E.; Neidhardt, M.; Peschel, M.; Walter, I.; Zender, B.

    1996-11-01

    High temperature events strongly influence the environmental processes. Therefore, their observation is an important constituent of the global monitoring network. Unfortunately the current remote sensing systems are not able to deliver the necessary information about the world wide burn out of vegetation and its consequences. For global observations a dedicated system of small satellites is required. The main components of the corresponding instrumentation are the infrared channels. The proposed HSRS (HOT SPOT RECOGNITION SENSOR) has to demonstrate the possibilities of an such instrumentation and its feasibility for small satellites. The main drawbacks of the HSRS design are the handling of the hot spot recognition in the subpixel area and of the saturation in the case of larger hot areas by a suitable signal processing hardware.

  15. Alcohol-related hot-spot analysis and prediction : final report.

    DOT National Transportation Integrated Search

    2017-05-01

    This project developed methods to more accurately identify alcohol-related crash hot spots, ultimately allowing for more effective and efficient enforcement and safety campaigns. Advancements in accuracy came from improving the calculation of spatial...

  16. Hot-spot evolution and the global tectonics of Venus

    NASA Astrophysics Data System (ADS)

    Phillips, R. J.; Grimm, R. E.; Malin, M. C.

    1991-05-01

    The global tectonics of Venus may be dominated by plumes rising from the mantle and impinging on the lithosphere, giving rise to hot spots. Global sea-floor spreading does not take place, but direct convective coupling of mantle flow fields to the lithosphere leads to regional-scale deformation and may allow lithospheric transport on a limited scale. A hot-spot evolutionary sequence comprises (1) a broad domal uplift resulting from a rising mantle plume, (2) massive partial melting in the plume head and generation of a thickened crust or crustal plateau, (3) collapse of dynamic topography, and (4) creep spreading of the crustal plateau. Crust on Venus is produced by gradual vertical differentiation with little recycling rather than by the rapid horizontal creation and consumption characteristic of terrestrial sea-floor spreading.

  17. Hot-spot evolution and the global tectonics of Venus

    NASA Technical Reports Server (NTRS)

    Phillips, Roger J.; Grimm, Robert E.; Malin, Michael C.

    1991-01-01

    The global tectonics of Venus may be dominated by plumes rising from the mantle and impinging on the lithosphere, giving rise to hot spots. Global sea-floor spreading does not take place, but direct convective coupling of mantle flow fields to the lithosphere leads to regional-scale deformation and may allow lithospheric transport on a limited scale. A hot-spot evolutionary sequence comprises (1) a broad domal uplift resulting from a rising mantle plume, (2) massive partial melting in the plume head and generation of a thickened crust or crustal plateau, (3) collapse of dynamic topography, and (4) creep spreading of the crustal plateau. Crust on Venus is produced by gradual vertical differentiation with little recycling rather than by the rapid horizontal creation and consumption characteristic of terrestrial sea-floor spreading.

  18. Hot-spot evolution and the global tectonics of venus.

    PubMed

    Phillips, R J; Grimm, R E; Malin, M C

    1991-05-03

    The global tectonics of Venus may be dominated by plumes rising from the mantle and impinging on the lithosphere, giving rise to hot spots. Global sea-floor spreading does not take place, but direct convective coupling of mantle flow fields to the lithosphere leads to regional-scale deformation and may allow lithospheric transport on a limited scale. A hot-spot evolutionary sequence comprises (i) a broad domal uplift resulting from a rising mantle plume, (ii) massive partial melting in the plume head and generation of a thickened crust or crustal plateau, (iii) collapse of dynamic topography, and (iv) creep spreading of the crustal plateau. Crust on Venus is produced by gradual vertical differentiation with little recycling rather than by the rapid horizontal creation and consumption characteristic of terrestrial sea-floor spreading.

  19. Transportation conformity particulate matter hot-spot air quality modeling.

    DOT National Transportation Integrated Search

    2013-07-01

    In light of the new development in particulate matter (PM) hot-spot regulations and Illinois Department : of Transportation (IDOT)s National Environmental Policy Act (NEPA) documentation requirements, : this project is intended to (1) perform and ...

  20. Hot spot temperature measurements in DT layered implosions

    NASA Astrophysics Data System (ADS)

    Patel, Pravesh; Ma, T.; Macphee, A.; Callahan, D.; Chen, H.; Cerjan, C.; Clark, D.; Edgell, D.; Hurricane, O.; Izumi, N.; Khan, S.; Jarrott, L.; Kritcher, A.; Springer, P.

    2015-11-01

    The temperature of the burning DT hot spot in an ICF implosion is a crucial parameter in understanding the thermodynamic conditions of the fuel at stagnation and and the performance of the implosion in terms of alpha-particle self-heating and energy balance. The continuum radiation spectrum emitted from the hot spot provides an accurate measure of the emissivity-weighted electron temperature. Absolute measurements of the emitted radiation are made with several independent instruments including spatially-resolved broadband imagers, and space- and time-integrated monochromatic detectors. We present estimates of the electron temperature in DT layered implosions derived from the radiation spectrum most consistent with the available measurements. The emissivity-weighted electron temperatures are compared to the neutron-averaged apparent ion temperatures inferred from neutron time-of-flight detectors. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  1. DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts

    PubMed Central

    2011-01-01

    Background A protein binding hot spot is a cluster of residues in the interface that are energetically important for the binding of the protein with its interaction partner. Identifying protein binding hot spots can give useful information to protein engineering and drug design, and can also deepen our understanding of protein-protein interaction. These residues are usually buried inside the interface with very low solvent accessible surface area (SASA). Thus SASA is widely used as an outstanding feature in hot spot prediction by many computational methods. However, SASA is not capable of distinguishing slightly buried residues, of which most are non hot spots, and deeply buried ones that are usually inside a hot spot. Results We propose a new descriptor called “burial level” for characterizing residues, atoms and atomic contacts. Specifically, burial level captures the depth the residues are buried. We identify different kinds of deeply buried atomic contacts (DBAC) at different burial levels that are directly broken in alanine substitution. We use their numbers as input for SVM to classify between hot spot or non hot spot residues. We achieve F measure of 0.6237 under the leave-one-out cross-validation on a data set containing 258 mutations. This performance is better than other computational methods. Conclusions Our results show that hot spot residues tend to be deeply buried in the interface, not just having a low SASA value. This indicates that a high burial level is not only a necessary but also a more sufficient condition than a low SASA for a residue to be a hot spot residue. We find that those deeply buried atoms become increasingly more important when their burial levels rise up. This work also confirms the contribution of deeply buried interfacial atomic contacts to the energy of protein binding hot spot. PMID:21689480

  2. Hot-spot analysis for drug discovery targeting protein-protein interactions.

    PubMed

    Rosell, Mireia; Fernández-Recio, Juan

    2018-04-01

    Protein-protein interactions are important for biological processes and pathological situations, and are attractive targets for drug discovery. However, rational drug design targeting protein-protein interactions is still highly challenging. Hot-spot residues are seen as the best option to target such interactions, but their identification requires detailed structural and energetic characterization, which is only available for a tiny fraction of protein interactions. Areas covered: In this review, the authors cover a variety of computational methods that have been reported for the energetic analysis of protein-protein interfaces in search of hot-spots, and the structural modeling of protein-protein complexes by docking. This can help to rationalize the discovery of small-molecule inhibitors of protein-protein interfaces of therapeutic interest. Computational analysis and docking can help to locate the interface, molecular dynamics can be used to find suitable cavities, and hot-spot predictions can focus the search for inhibitors of protein-protein interactions. Expert opinion: A major difficulty for applying rational drug design methods to protein-protein interactions is that in the majority of cases the complex structure is not available. Fortunately, computational docking can complement experimental data. An interesting aspect to explore in the future is the integration of these strategies for targeting PPIs with large-scale mutational analysis.

  3. DICER1 hot-spot mutations in ovarian gynandroblastoma.

    PubMed

    Wang, Yemin; Karnezis, Anthony N; Magrill, Jamie; Tessier-Cloutier, Basile; Lum, Amy; Senz, Janine; Gilks, C Blake; McCluggage, W Glenn; Huntsman, David G; Kommoss, Friedrich

    2018-04-16

    Gynandroblastoma is a rare ovarian sex cord-stromal tumour characterised by the presence of both male (Sertoli and/or Leydig cells) and female (granulosa cells) components. We investigated the mutational status of DICER1, FOXL2 and AKT1 genes at hot-spot regions that are known to be the key driving events in the development of Sertoli-Leydig cell tumour (SLCT), adult granulosa cell tumour (aGCT) and juvenile granulosa cell tumour (jGCT), respectively, to gain insights into the molecular pathogenesis of gynandroblastoma. Sixteen cases of gynandroblastoma were studied. All contained SLCT or Sertoli cell tumour components. aGCT and jGCT components were identified in seven and 10 cases, respectively, with one presenting both components. Heterozygous hot-spot mutations in the RNase IIIb domain of DICER1 were discovered in three cases, including one case with heterologous mucinous elements, all of which were composed of moderately or poorly differentiated SLCT and jGCT components, and harboured the mutations in both histological components. None of the 16 cases displayed mutations at the p.C134W (c.402C→G) of FOXL2 or within the pleckstrin-homology domain of AKT1. All cases showed FOXL2 immunostaining in both male and female components. DICER1 hot-spot mutation is the key-driving event in a subset of gynandroblastomas containing components of SLCT and jGCT. Gynandroblastomas composed of SLCT and jGCT may represent morphological variants of SLCT. The molecular basis of gynandroblastoma containing a component of aGCT is different from pure aGCT. © 2018 John Wiley & Sons Ltd.

  4. Hot Spots from Dislocation Pile-up Avalanches

    NASA Astrophysics Data System (ADS)

    Armstrong, Ronald; Grise, William

    2005-07-01

    The model of hot spots developed at dislocation pile-up avalanches has been employed to explain both: greater drop- weight heights being required to initiate chemical decomposition of smaller crystals [1]; and, the susceptibility to shear banding of energetic and reference inert materials, for example, adiabatic shear banding in steel [2]. The evidence for RDX (cyclotrimethylenetrinitramine) is that few dislocations are needed in the pile-ups thus providing justification for assessing dynamic pile-up release on a numerical basis for few dislocation numbers [3]. For release from a viscous obstacle, previous and new computations lead to a local temperature plateau occurring at the origin of pile-up release [4], in line with the physical concept of a hot spot. [1] R.W. Armstrong, C.S. Coffey, V.F. DeVost and W.L. Elban, J. Appl. Phys. 68 (1990) 979. [2] R.W. Armstrong and F.J. Zerilli, Mech. Mater. 17 (1994) 319. [3] R.W. Armstrong, Proc. Eighth Intern. Seminar: New Trends in Research of Energetic Materials, April 19- 21, 2005, Pardubice, CZ. [4] W.R. Grise, NRC/AFOSR Summer Faculty Fellowship Program, AFRL/MNME, Eglin Air Force Base, FL, 2003.

  5. Biodiversity hot spot on a hot spot: novel extremophile diversity in Hawaiian fumaroles.

    PubMed

    Wall, Kate; Cornell, Jennifer; Bizzoco, Richard W; Kelley, Scott T

    2015-01-06

    Fumaroles (steam vents) are the most common, yet least understood, microbial habitat in terrestrial geothermal settings. Long believed too extreme for life, recent advances in sample collection and DNA extraction methods have found that fumarole deposits and subsurface waters harbor a considerable diversity of viable microbes. In this study, we applied culture-independent molecular methods to explore fumarole deposit microbial assemblages in 15 different fumaroles in four geographic locations on the Big Island of Hawai'i. Just over half of the vents yielded sufficient high-quality DNA for the construction of 16S ribosomal RNA gene sequence clone libraries. The bacterial clone libraries contained sequences belonging to 11 recognized bacterial divisions and seven other division-level phylogenetic groups. Archaeal sequences were less numerous, but similarly diverse. The taxonomic composition among fumarole deposits was highly heterogeneous. Phylogenetic analysis found cloned fumarole sequences were related to microbes identified from a broad array of globally distributed ecotypes, including hot springs, terrestrial soils, and industrial waste sites. Our results suggest that fumarole deposits function as an "extremophile collector" and may be a hot spot of novel extremophile biodiversity. © 2015 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

  6. Biodiversity hot spot on a hot spot: novel extremophile diversity in Hawaiian fumaroles

    PubMed Central

    Wall, Kate; Cornell, Jennifer; Bizzoco, Richard W; Kelley, Scott T

    2015-01-01

    Fumaroles (steam vents) are the most common, yet least understood, microbial habitat in terrestrial geothermal settings. Long believed too extreme for life, recent advances in sample collection and DNA extraction methods have found that fumarole deposits and subsurface waters harbor a considerable diversity of viable microbes. In this study, we applied culture-independent molecular methods to explore fumarole deposit microbial assemblages in 15 different fumaroles in four geographic locations on the Big Island of Hawai'i. Just over half of the vents yielded sufficient high-quality DNA for the construction of 16S ribosomal RNA gene sequence clone libraries. The bacterial clone libraries contained sequences belonging to 11 recognized bacterial divisions and seven other division-level phylogenetic groups. Archaeal sequences were less numerous, but similarly diverse. The taxonomic composition among fumarole deposits was highly heterogeneous. Phylogenetic analysis found cloned fumarole sequences were related to microbes identified from a broad array of globally distributed ecotypes, including hot springs, terrestrial soils, and industrial waste sites. Our results suggest that fumarole deposits function as an “extremophile collector” and may be a hot spot of novel extremophile biodiversity. PMID:25565172

  7. Online Adaptive Hyperthermia Treatment Planning During Locoregional Heating to Suppress Treatment-Limiting Hot Spots.

    PubMed

    Kok, H Petra; Korshuize-van Straten, Linda; Bakker, Akke; de Kroon-Oldenhof, Rianne; Geijsen, Elisabeth D; Stalpers, Lukas J A; Crezee, Johannes

    2017-11-15

    Adequate tumor temperatures during hyperthermia are essential for good clinical response, but excessive heating of normal tissue should be avoided. This makes locoregional heating using phased array systems technically challenging. Online application of hyperthermia treatment planning could help to improve the heating quality. The aim of this study was to evaluate the clinical benefit of online treatment planning during treatment of pelvic tumors heated with the AMC-8 locoregional hyperthermia system. For online adaptive hyperthermia treatment planning, a graphical user interface was developed. Electric fields were calculated in a preprocessing step using our in-house-developed finite-difference-based treatment planning system. This allows instant calculation of the temperature distribution for user-selected phase-amplitude settings during treatment and projection onto the patient's computed tomographic scan for online visualization. Online treatment planning was used for 14 treatment sessions in 8 patients to reduce the patients' reports of hot spots while maintaining the same level of tumor heating. The predicted decrease in hot spot temperature should be at least 0.5°C, and the tumor temperature should decrease less than 0.2°C. These predictions were compared with clinical data: patient feedback about the hot spot and temperature measurements in the tumor region. In total, 17 hot spot reports occurred during the 14 sessions, and the alternative settings predicted the hot spot temperature to decrease by at least 0.5°C, which was confirmed by the disappearance of all 17 hot spot reports. At the same time, the average tumor temperature was predicted to change on average -0.01°C (range, -0.19°C to 0.34°C). The measured tumor temperature change was on average only -0.02°C (range, -0.26°C to 0.31°C). In only 2 cases the temperature decrease was slightly larger than 0.2°C, but at most it was 0.26°C. Online application of hyperthermia treatment planning is

  8. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ..., PM10, and PM2.5 violations (hot-spots). 93.116 Section 93.116 Protection of Environment ENVIRONMENTAL....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph... hot-spot analysis in PM10 and PM2.5 nonattainment and maintenance areas for FHWA/FTA projects that are...

  9. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., PM10, and PM2.5 violations (hot-spots). 93.116 Section 93.116 Protection of Environment ENVIRONMENTAL....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph... hot-spot analysis in PM10 and PM2.5 nonattainment and maintenance areas for FHWA/FTA projects that are...

  10. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ..., PM10, and PM2.5 violations (hot-spots). 93.116 Section 93.116 Protection of Environment ENVIRONMENTAL....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph... hot-spot analysis in PM10 and PM2.5 nonattainment and maintenance areas for FHWA/FTA projects that are...

  11. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ..., PM10, and PM2.5 violations (hot-spots). 93.116 Section 93.116 Protection of Environment ENVIRONMENTAL....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph... hot-spot analysis in PM10 and PM2.5 nonattainment and maintenance areas for FHWA/FTA projects that are...

  12. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ..., PM10, and PM2.5 violations (hot-spots). 93.116 Section 93.116 Protection of Environment ENVIRONMENTAL....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph... hot-spot analysis in PM10 and PM2.5 nonattainment and maintenance areas for FHWA/FTA projects that are...

  13. Identifying fish diversity hot-spots in data-poor situations.

    PubMed

    Fonseca, Vinícius Prado; Pennino, Maria Grazia; de Nóbrega, Marcelo Francisco; Oliveira, Jorge Eduardo Lins; de Figueiredo Mendes, Liana

    2017-08-01

    One of the more challenging tasks in Marine Spatial Planning (MSP) is identifying critical areas for management and conservation of fish stocks. However, this objective is difficult to achieve in data-poor situations with different sources of uncertainty. In the present study we propose a combination of hierarchical Bayesian spatial models and remotely sensed estimates of environmental variables to be used as flexible and reliable statistical tools to identify and map fish species richness and abundance hot-spots. Results show higher species aggregates in areas with higher sea floor rugosity and habitat complexity, and identify clear richness hot-spots. Our findings identify sensitive habitats through essential and easy-to-use interpretation tools, such as predictive maps, which can contribute to improving management and operability of the studied data-poor situations. Copyright © 2017 Elsevier Ltd. All rights reserved.

  14. Calculated occultation profiles of Io and the hot spots

    NASA Technical Reports Server (NTRS)

    Mcewen, A. S.; Soderblom, L. A.; Matson, D. L.; Johnson, T. V.; Lunine, J. I.

    1986-01-01

    Occultations of Io by other Galilean satellites in 1985 provide a means to locate volcanic hot spots and to model their temperatures. The expected time variations in the integral reflected and emitted radiation of the occultations are computed as a function of wavelength (visual to 8.7 microns). The best current ephemerides were used to calculate the geometry of each event as viewed from earth. Visual reflectances were modeled from global mosaics of Io. Thermal emission from the hot spots was calculated from Voyager 1 IRIS observations and, for regions unobserved by IRIS, from a model based on the distribution of low-albedo features. The occultations may help determine (1) the location and temperature distribution of Loki; (2) the source(s) of excess emission in the region from long 50 deg to 200 deg and (3) the distribution of small, high-temperature sources.

  15. Characterization of hot spots for natural chloroform formation: Relevance for groundwater quality

    NASA Astrophysics Data System (ADS)

    Jacobsen, Ole S.; Albers, Christian N.; Laier, Troels

    2015-04-01

    Chloroform soil hot spot may deteriorate groundwater quality and may even result in chloroform concentration exceeding the Danish maximum limit of 1 µg/L in groundwater for potable use. In order to characterize the soil properties important for the chloroform production, various ecosystems were examined with respect to soil air chloroform and soil organic matter type and content. Coniferous forest areas, responsible for highest chloroform concentrations, were examined on widely different scales from km to cm scale. Furthermore, regular soil gas measurements including chloroform were performed during 4 seasons at various depths, together with various meteorological measurements and soil temperature recordings. Laboratory incubation experiments were also performed on undisturbed soil samples in order to examine the role of various microbiota, fungi and bacteria. To identify hot spots responsible for the natural contamination we have measured the production of chloroform in the upper soil from different terrestrial systems. Field measurements of chloroform in top soil air were used as production indicators. The production was however not evenly distributed at any scale. The ecosystems seem to have quite different net-productions of chloroform from very low in grassland to very high in some coniferous forests. Within the forest ecosystem we found large variation in chloroform concentrations depending on vegetation. In beech forest we found the lowest values, somewhat higher in an open pine forest, but the highest concentrations were detected in spruce forest without any vegetation beneath. Within this ecotype, it appeared that the variation was also large; hot spots with 2-4 decades higher production than the surrounding area. These hot spots were not in any way visually different from the surroundings and were of variable size from 3 to 20 meters in diameter. Besides this, measurements within a seemingly homogenous hot spot showed that there was still high

  16. Controlling surface-plasmon-polaritons launching with hot spot cylindrical waves in a metallic slit structure.

    PubMed

    Yao, Wenjie; Sun, Chengwei; Gong, Qihuang; Chen, Jianjun

    2016-09-23

    Plasmonic nanostructures, which are used to generate surface plasmon polaritons (SPPs), always involve sharp corners where the charges can accumulate. This can result in strong localized electromagnetic fields at the metallic corners, forming the hot spots. The influence of the hot spots on the propagating SPPs are investigated theoretically and experimentally in a metallic slit structure. It is found that the electromagnetic fields radiated from the hot spots, termed as the hot spot cylindrical wave (HSCW), can greatly manipulate the SPP launching in the slit structure. The physical mechanism behind the manipulation of the SPP launching with the HSCW is explicated by a semi-analytic model. By using the HSCW, unidirectional SPP launching is experimentally realized in an ultra-small metallic step-slit structure. The HSCW bridges the localized surface plasmons and the propagating surface plasmons in an integrated platform and thus may pave a new route to the design of plasmonic devices and circuits.

  17. Material influence on hot spot distribution in the nanoparticle heterodimer on film

    NASA Astrophysics Data System (ADS)

    Chen, Fang; Huang, Yingzhou; Wei, Hua; Wang, Shuxia; Zeng, Xiping; Cao, Wenbin; Wen, Weijia

    2018-04-01

    The metal nanoparticle aggregated on film, as an effective plasma enhancement pathway, has been widely used in various surface plasmon-related fields. In this study, the hot spots on the metal nanoparticle dimer composed of different materials (Agsbnd Au, Agsbnd Pd, and Agsbnd Cu) on metal (Au) film were investigated with finite element method. Based on the results, the hot spot distribution affected by the material can be confirmed by the electric field distribution of the metal nanoparticle dimer on the film. The aggregation effects of Au and Ag nanoparticles in Ausbnd Ag dimer system are not significant. However, for the Pdsbnd Ag dimer system, the hot spot aggregation effect is slightly larger than that of the Pd nanoparticle under the Ag nanoparticle. Besides, the non-uniform hot spots would bring about the light focusing phenomenon that the light intensity under Ag nanoparticle is almost 100 times greater than that under Cu nanoparticle in Agsbnd Cu dimer system. These results were further confirmed by the surface charge distribution, and analyzed based on the plasmonic hybridization theory. The data about the nanoparticle dimer on the dielectric (Si) film demonstrate the importance of induced image charges on the film surface in such a light focusing phenomenon. Our findings can enhance the understanding of the surface plasmon coupling in different materials, which may have great application prospects in surface plasmon-related fields, such as SERS, plasmonic enhanced solar cell, and plasmonic sensoring, etc.

  18. ELIPGRID-PC: A PC program for calculating hot spot probabilities

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Davidson, J.R.

    1994-10-01

    ELIPGRID-PC, a new personal computer program has been developed to provide easy access to Singer`s 1972 ELIPGRID algorithm for hot-spot detection probabilities. Three features of the program are the ability to determine: (1) the grid size required for specified conditions, (2) the smallest hot spot that can be sampled with a given probability, and (3) the approximate grid size resulting from specified conditions and sampling cost. ELIPGRID-PC also provides probability of hit versus cost data for graphing with spread-sheets or graphics software. The program has been successfully tested using Singer`s published ELIPGRID results. An apparent error in the original ELIPGRIDmore » code has been uncovered and an appropriate modification incorporated into the new program.« less

  19. Distribution of flares on the sun during 1955-1985 - 'Hot spots' (active zones) lasting for 30 years

    NASA Technical Reports Server (NTRS)

    Bai, Taeil

    1988-01-01

    The coordinates of 'major solar flares' observed during the period from January 1955 through August 1985 are analyzed. About 100 'superactive' regions (large, complex, active regions containing large sunspots) produced 46 percent of the major flares during the period. Superactive regions appeared more frequently in certain areas of the sun called 'hot spots' or 'active zones'. The synodic rotation periods of the northern and southern hemisphere hot spots were 26.72 d and 26.61 d, respectively. One of the two hot spots persisted through three solar cycles, and the other was active during cycles 19 and 21 but was dormant during cycle 20. These findings suggest that the mechanism producing hot spots must be stable for two or three solar cycles or longer.

  20. Effects of Long- and Intermediate-Wavelength Nonuniformities on Hot-Spot Energetics of Hydrodynamic Equivalent Targets

    NASA Astrophysics Data System (ADS)

    Bose, A.; Betti, R.; Woo, K. M.; Christopherson, A. R.; Shvarts, D.

    2015-11-01

    The impact of intermediate- and low-mode nonuniformities on the performance of inertial confinement fusion (ICF) implosions is investigated by a detailed study of hot-spot energetics. It is found that low- (1 ~ 2) and intermediate-mode (1 >= 10) asymmetries affect the hot-spot hydrodynamics in very different ways. It is observed that for low-mode asymmetries, the fusion yield decreases because of a significant reduction in hot-spot pressure while the neutron-averaged hot-spot volume remains comparable to that of unperturbed (clean) simulations. On the other hand, implosions with moderate-amplitude, intermediate-wavelength modes, which are amplified by the Rayleigh-Taylor instability (RTI), exhibit a fusion-yield degradation primarily caused by a reduction in the burn volume without significant degradation of the pressure. For very large amplitudes, the intermediate modes show a ``secondary piston effect,'' where the converging RTI spikes compress a much smaller volume, allowing for a secondary conversion of the shell's kinetic energy to internal energy at a central region. Understanding the effects of nonuniformities on the hot-spot energetics provides valuable insight in determining the causes of performance degradation in current ICF experiments. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944 and DE-FC02-04ER54789 (Fusion Science Center).

  1. Structural hot spots for the solubility of globular proteins

    PubMed Central

    Ganesan, Ashok; Siekierska, Aleksandra; Beerten, Jacinte; Brams, Marijke; Van Durme, Joost; De Baets, Greet; Van der Kant, Rob; Gallardo, Rodrigo; Ramakers, Meine; Langenberg, Tobias; Wilkinson, Hannah; De Smet, Frederik; Ulens, Chris; Rousseau, Frederic; Schymkowitz, Joost

    2016-01-01

    Natural selection shapes protein solubility to physiological requirements and recombinant applications that require higher protein concentrations are often problematic. This raises the question whether the solubility of natural protein sequences can be improved. We here show an anti-correlation between the number of aggregation prone regions (APRs) in a protein sequence and its solubility, suggesting that mutational suppression of APRs provides a simple strategy to increase protein solubility. We show that mutations at specific positions within a protein structure can act as APR suppressors without affecting protein stability. These hot spots for protein solubility are both structure and sequence dependent but can be computationally predicted. We demonstrate this by reducing the aggregation of human α-galactosidase and protective antigen of Bacillus anthracis through mutation. Our results indicate that many proteins possess hot spots allowing to adapt protein solubility independently of structure and function. PMID:26905391

  2. Hot Spots in a Network of Functional Sites

    PubMed Central

    Ozbek, Pemra; Soner, Seren; Haliloglu, Turkan

    2013-01-01

    It is of significant interest to understand how proteins interact, which holds the key phenomenon in biological functions. Using dynamic fluctuations in high frequency modes, we show that the Gaussian Network Model (GNM) predicts hot spot residues with success rates ranging between S 8–58%, C 84–95%, P 5–19% and A 81–92% on unbound structures and S 8–51%, C 97–99%, P 14–50%, A 94–97% on complex structures for sensitivity, specificity, precision and accuracy, respectively. High specificity and accuracy rates with a single property on unbound protein structures suggest that hot spots are predefined in the dynamics of unbound structures and forming the binding core of interfaces, whereas the prediction of other functional residues with similar dynamic behavior explains the lower precision values. The latter is demonstrated with the case studies; ubiquitin, hen egg-white lysozyme and M2 proton channel. The dynamic fluctuations suggest a pseudo network of residues with high frequency fluctuations, which could be plausible for the mechanism of biological interactions and allosteric regulation. PMID:24023934

  3. Hot spots and hot moments in riparian zones: Potential for improved water quality management

    Treesearch

    Philippe Vidon; Craig Allan; Douglas Burns; Tim P. Duval; Noel Gurwick; Shreeram Inamdar; Richard Lowrance; Judy Okay; Durelle Scott; Stephen Sebestyen

    2010-01-01

    Biogeochemical and hydrological processes in riparian zones regulate contaminant movement to receiving waters and often mitigate the impact of upland sources of contaminants on water quality. These heterogeneous processes have recently been conceptualized as "hot spots and moments" of retention, degradation, or production. Nevertheless, studies investigating...

  4. Small Molecules Engage Hot Spots through Cooperative Binding To Inhibit a Tight Protein-Protein Interaction.

    PubMed

    Liu, Degang; Xu, David; Liu, Min; Knabe, William Eric; Yuan, Cai; Zhou, Donghui; Huang, Mingdong; Meroueh, Samy O

    2017-03-28

    Protein-protein interactions drive every aspect of cell signaling, yet only a few small-molecule inhibitors of these interactions exist. Despite our ability to identify critical residues known as hot spots, little is known about how to effectively engage them to disrupt protein-protein interactions. Here, we take advantage of the ease of preparation and stability of pyrrolinone 1, a small-molecule inhibitor of the tight interaction between the urokinase receptor (uPAR) and its binding partner, the urokinase-type plasminogen activator uPA, to synthesize more than 40 derivatives and explore their effect on the protein-protein interaction. We report the crystal structure of uPAR bound to previously discovered pyrazole 3 and to pyrrolinone 12. While both 3 and 12 bind to uPAR and compete with a fluorescently labeled peptide probe, only 12 and its derivatives inhibit the full uPAR·uPA interaction. Compounds 3 and 12 mimic and engage different hot-spot residues on uPA and uPAR, respectively. Interestingly, 12 is involved in a π-cation interaction with Arg-53, which is not considered a hot spot. Explicit-solvent molecular dynamics simulations reveal that 3 and 12 exhibit dramatically different correlations of motion with residues on uPAR. Free energy calculations for the wild-type and mutant uPAR bound to uPA or 12 show that Arg-53 interacts with uPA or with 12 in a highly cooperative manner, thereby altering the contributions of hot spots to uPAR binding. The direct engagement of peripheral residues not considered hot spots through π-cation or salt-bridge interactions could provide new opportunities for enhanced small-molecule engagement of hot spots to disrupt challenging protein-protein interactions.

  5. Hot-spot residues at the E9/Im9 interface help binding via different mechanisms.

    PubMed

    Wong, Sergio E; Baron, Riccardo; McCammon, J Andrew

    2008-11-01

    Protein-protein association involves many interface interactions, but they do not contribute equally. Ala scanning experiments reveal that only a few mutations significantly lower binding affinity. These key residues, which appear to drive protein-protein association, are called hot-spot residues. Molecular dynamics simulations of the Colicin E9/Im9 complex show Im9 Glu41 and Im9 Ser50, both hot-spots, bind via different mechanisms. The results suggest that Im9 Ser50 restricts Glu41 in a conformation auspicious for salt-bridge formation across the interface. This type of model may be helpful in engineering hot-spot clusters at protein-protein interfaces and, consequently, the design of specificity.

  6. Analysis of Binding Site Hot Spots on the Surface of Ras GTPase

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Buhrman, Greg; O; #8242

    2012-09-17

    We have recently discovered an allosteric switch in Ras, bringing an additional level of complexity to this GTPase whose mutants are involved in nearly 30% of cancers. Upon activation of the allosteric switch, there is a shift in helix 3/loop 7 associated with a disorder to order transition in the active site. Here, we use a combination of multiple solvent crystal structures and computational solvent mapping (FTMap) to determine binding site hot spots in the 'off' and 'on' allosteric states of the GTP-bound form of H-Ras. Thirteen sites are revealed, expanding possible target sites for ligand binding well beyond themore » active site. Comparison of FTMaps for the H and K isoforms reveals essentially identical hot spots. Furthermore, using NMR measurements of spin relaxation, we determined that K-Ras exhibits global conformational dynamics very similar to those we previously reported for H-Ras. We thus hypothesize that the global conformational rearrangement serves as a mechanism for allosteric coupling between the effector interface and remote hot spots in all Ras isoforms. At least with respect to the binding sites involving the G domain, H-Ras is an excellent model for K-Ras and probably N-Ras as well. Ras has so far been elusive as a target for drug design. The present work identifies various unexplored hot spots throughout the entire surface of Ras, extending the focus from the disordered active site to well-ordered locations that should be easier to target.« less

  7. Predicting hot spots in protein interfaces based on protrusion index, pseudo hydrophobicity and electron-ion interaction pseudopotential features

    PubMed Central

    Xia, Junfeng; Yue, Zhenyu; Di, Yunqiang; Zhu, Xiaolei; Zheng, Chun-Hou

    2016-01-01

    The identification of hot spots, a small subset of protein interfaces that accounts for the majority of binding free energy, is becoming more important for the research of drug design and cancer development. Based on our previous methods (APIS and KFC2), here we proposed a novel hot spot prediction method. For each hot spot residue, we firstly constructed a wide variety of 108 sequence, structural, and neighborhood features to characterize potential hot spot residues, including conventional ones and new one (pseudo hydrophobicity) exploited in this study. We then selected 3 top-ranking features that contribute the most in the classification by a two-step feature selection process consisting of minimal-redundancy-maximal-relevance algorithm and an exhaustive search method. We used support vector machines to build our final prediction model. When testing our model on an independent test set, our method showed the highest F1-score of 0.70 and MCC of 0.46 comparing with the existing state-of-the-art hot spot prediction methods. Our results indicate that these features are more effective than the conventional features considered previously, and that the combination of our and traditional features may support the creation of a discriminative feature set for efficient prediction of hot spots in protein interfaces. PMID:26934646

  8. In Situ Hot-Spot Assembly as a General Strategy for Probing Single Biomolecules.

    PubMed

    Liu, Huiqiao; Li, Qiang; Li, Mingmin; Ma, Sisi; Liu, Dingbin

    2017-05-02

    Single-molecule detection using surface-enhanced Raman spectroscopy (SERS) has attracted increasing attention in chemical and biomedical analysis. However, it remains a major challenge to probe single biomolecules by means of SERS hot spots owing to the small volume of hot spots and their random distribution on substrates. We here report an in situ hot-spot assembly method as a general strategy for probing single biomolecules. As a proof-of-concept, this proposed strategy was successfully used for the detection of single microRNA-21 (miRNA-21, a potential cancer biomarker) at the single-cell level, showing great capability in differentiating the expression of miRNA-21 in single cancer cells from normal cells. This approach was further extended to single-protein detection. The versatility of the strategy opens an exciting avenue for single-molecule detection of biomarkers of interest and thus holds great promise in a variety of biological and biomedical applications.

  9. The thermal emission spectrum of Io and a determination of the heat flux from its hot spots

    NASA Technical Reports Server (NTRS)

    Sinton, W. M.

    1981-01-01

    Observations of thermal emission from Io in the near infrared made during an eclipse were combined with unpublished 8- to 13-micron intermediate band photometry and a 16- to 22-micron spectrum to specify Io's emission spectrum from 2.2 to 22 microns. Models were calculated having 'hot spots' at several different temperatures superposed on a surface, the major part of which is assumed to be at the solar equilibrium temperature. It was possible to fit the entire composite spectrum with this model. It is argued that the total emission from the hot spots can be equated to the nonsolar energy input into Io. The disk-averaged heat radiated by the hot spots is found to be 180 + or 60 microwatts/sq cm = 43 + or - 14 microcalories/sq cm-sec. A possible bimodal temperature distribution of the hot spots is discussed.

  10. Use of roadway attributes in hot spot identification and analysis.

    DOT National Transportation Integrated Search

    2015-10-01

    This research focuses on the addition of roadway attributes in the selection and analysis of hot spots. This : is in conjunction with the framework for highway safety mitigation in Utah with its six primary steps: network : screening, diagnosis...

  11. Preliminary results on the composition of Jupiter's troposphere in hot spot regions from the JIRAM/Juno instrument

    NASA Astrophysics Data System (ADS)

    Grassi, D.; Adriani, A.; Mura, A.; Dinelli, B. M.; Sindoni, G.; Turrini, D.; Filacchione, G.; Migliorini, A.; Moriconi, M. L.; Tosi, F.; Noschese, R.; Cicchetti, A.; Altieri, F.; Fabiano, F.; Piccioni, G.; Stefani, S.; Atreya, S.; Lunine, J.; Orton, G.; Ingersoll, A.; Bolton, S.; Levin, S.; Connerney, J.; Olivieri, A.; Amoroso, M.

    2017-05-01

    The Jupiter InfraRed Auroral Mapper (JIRAM) instrument on board the Juno spacecraft performed observations of two bright Jupiter hot spots around the time of the first Juno pericenter passage on 27 August 2016. The spectra acquired in the 4-5 µm spectral range were analyzed to infer the residual opacities of the uppermost cloud deck as well as the mean mixing ratios of water, ammonia, and phosphine at the approximate level of few bars. Our results support the current view of hot spots as regions of prevailing descending vertical motions in the atmosphere but extend this view suggesting that upwelling may occur at the southern boundaries of these structures. Comparison with the global ammonia abundance measured by Juno Microwave Radiometer suggests also that hot spots may represent sites of local enrichment of this gas. JIRAM also identifies similar spatial patterns in water and phosphine contents in the two hot spots.

  12. POTENTIAL AIR TOXICS HOT SPOTS IN TRUCK TERMINALS AND CABS

    EPA Science Inventory

    All three types of testing sites — upwind and downwind traffic — met the established definition for a hot spot by having periods with concentrations of pollutants that exceeded the EPA’s screening values. Most frequently, the pollutants with concentrations...

  13. Drug 'hot-spots', alcohol availability and violence.

    PubMed

    Gorman, D M; Zhu, Li; Horel, Scott

    2005-11-01

    Ecological studies have shown a relationship between alcohol outlet densities and violence and between the location of crimes related to illicit drug use (so-called 'hot spots') and violence. To date, no study has compared the effects of alcohol outlets and drug hot spots on rates of violence. The present study examined this relationship in the City of Houston, Texas. An ecological study design was employed, using a sample of 439 census tracts from Houston, Texas. Neighborhood socio-structural, alcohol outlet density, drug crime density and violent crime density data were collected from archival sources and analyzed using multivariate and spatial statistics. Using ordinary least-squares analysis, the neighborhood socio-structural covariates explained about 40% of the variability in violent crime. Adding alcohol outlet density in the target census tracts explained an additional 6%, while the addition of drug crime density explained an additional 32%. In the final model, that controlled for the effects of autocorrelated error, both drug crime density in the target and adjacent census tracts remained significant predictors of violent crime, while only off-sale density in the target census tract remained significant in the model. The findings indicate that drug crime density explained a greater amount of variance in violent crime rates than the alcohol outlet density. The methodological and policy implications of these findings are discussed, along with the shortcomings of the analysis presented.

  14. Detection of spatial hot spots and variation for the neon flying squid Ommastrephes bartramii resources in the northwest Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Feng, Yongjiu; Chen, Xinjun; Liu, Yan

    2017-07-01

    With the increasing effects of global climate change and fishing activities, the spatial distribution of the neon flying squid ( Ommastrephes bartramii) is changing in the traditional fishing ground of 150°-160°E and 38°-45°N in the northwest Pacific Ocean. This research aims to identify the spatial hot and cold spots (i.e. spatial clusters) of O. bartramii to reveal its spatial structure using commercial fishery data from 2007 to 2010 collected by Chinese mainland squid-jigging fleets. A relatively strongly-clustered distribution for O. bartramii was observed using an exploratory spatial data analysis (ESDA) method. The results show two hot spots and one cold spot in 2007 while only one hot and one cold spots were identified each year from 2008 to 2010. The hot and cold spots in 2007 occupied 8.2% and 5.6% of the study area, respectively; these percentages for hot and cold spot areas were 5.8% and 3.1% in 2008, 10.2% and 2.9% in 2009, and 16.4% and 11.9% in 2010, respectively. Nearly half (>45%) of the squid from 2007 to 2009 reported by Chinese fleets were caught in hot spot areas while this percentage reached its peak at 68.8% in 2010, indicating that the hot spot areas are central fishing grounds. A further change analysis shows the area centered at 156°E/43.5°N was persistent as a hot spot over the whole period from 2007 to 2010. Furthermore, the hot spots were mainly identified in areas with sea surface temperature (SST) in the range of 15-20°C around warm Kuroshio Currents as well as with the chlorophyll- a (chl- a) concentration above 0.3 mg/m3. The outcome of this research improves our understanding of spatiotemporal hotspots and its variation for O. bartramii and is useful for sustainable exploitation, assessment, and management of this squid.

  15. Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hot spots in mice

    PubMed Central

    de Boer, Esther; Jasin, Maria; Keeney, Scott

    2015-01-01

    Meiotic recombination initiated by programmed double-strand breaks (DSBs) yields two types of interhomolog recombination products, crossovers and noncrossovers, but what determines whether a DSB will yield a crossover or noncrossover is not understood. In this study, we analyzed the influence of sex and chromosomal location on mammalian recombination outcomes by constructing fine-scale recombination maps in both males and females at two mouse hot spots located in different regions of the same chromosome. These include the most comprehensive maps of recombination hot spots in oocytes to date. One hot spot, located centrally on chromosome 1, behaved similarly in male and female meiosis: Crossovers and noncrossovers formed at comparable levels and ratios in both sexes. In contrast, at a distal hot spot, crossovers were recovered only in males even though noncrossovers were obtained at similar frequencies in both sexes. These findings reveal an example of extreme sex-specific bias in recombination outcome. We further found that estimates of relative DSB levels are surprisingly poor predictors of relative crossover frequencies between hot spots in males. Our results demonstrate that the outcome of mammalian meiotic recombination can be biased, that this bias can vary depending on location and cellular context, and that DSB frequency is not the only determinant of crossover frequency. PMID:26251527

  16. Upper mantle temperature and the onset of extension and break-up in Afar, Africa

    NASA Astrophysics Data System (ADS)

    Armitage, John J.; Ferguson, David J.; Goes, Saskia; Hammond, James O. S.; Calais, Eric; Rychert, Catherine A.; Harmon, Nicholas

    2015-05-01

    It is debated to what extent mantle plumes play a role in continental rifting and eventual break-up. Afar lies at the northern end of the largest and most active present-day continental rift, where the East African Rift forms a triple junction with the Red Sea and Gulf of Aden rifts. It has a history of plume activity yet recent studies have reached conflicting conclusions on whether a plume still contributes to current Afar tectonics. A geochemical study concluded that Afar is a mature hot rift with 80 km thick lithosphere, while seismic data have been interpreted to reflect the structure of a young, oceanic rift basin above mantle of normal temperature. We develop a self-consistent forward model of mantle flow that incorporates melt generation and retention to test whether predictions of melt chemistry, melt volume and lithosphere-asthenosphere seismic structure can be reconciled with observations. The rare-earth element composition of mafic samples at the Erta Ale, Dabbahu and Asal magmatic segments can be used as both a thermometer and chronometer of the rifting process. Low seismic velocities require a lithosphere thinned to 50 km or less. A strong positive impedance contrast at 50 to 70 km below the rift seems linked to the melt zone, but is not reproduced by isotropic seismic velocity alone. Combined, the simplest interpretation is that mantle temperature below Afar is still elevated at 1450 °C, rifting started around 22-23 Ma, and the lithosphere has thinned from 100 to 50 km to allow significant decompressional melting.

  17. Io - Ground-based observations of hot spots

    NASA Technical Reports Server (NTRS)

    Sinton, W. M.; Tokunaga, A. T.; Becklin, E. E.; Gatley, I.; Lee, T. J.; Lonsdale, C. J.

    1980-01-01

    Observations of Io in eclipse demonstrate conclusively that Io emits substantial amounts of radiation at 4.8 and 3.8 micrometers and a measurable amount at 2.2 micrometers. Color temperatures derived from the observations fit blackbody emission at 560 K. The required source area to yield the observed 4.8-micrometer flux is approximately 5 x 10 to the -5th of the disk of Io and is most likely comprised of small hot spots in the vicinity of the volcanoes.

  18. Encoding Random Hot Spots of a Volume Gold Nanorod Assembly for Ultralow Energy Memory.

    PubMed

    Dai, Qiaofeng; Ouyang, Min; Yuan, Weiguang; Li, Jinxiang; Guo, Banghong; Lan, Sheng; Liu, Songhao; Zhang, Qiming; Lu, Guang; Tie, Shaolong; Deng, Haidong; Xu, Yi; Gu, Min

    2017-09-01

    Data storage with ultrahigh density, ultralow energy, high security, and long lifetime is highly desirable in the 21st century and optical data storage is considered as the most promising way to meet the challenge of storing big data. Plasmonic coupling in regularly arranged metallic nanoparticles has demonstrated its superior properties in various applications due to the generation of hot spots. Here, the discovery of the polarization and spectrum sensitivity of random hot spots generated in a volume gold nanorod assembly is reported. It is demonstrated that the two-photon-induced absorption and two-photon-induced luminescence of the gold nanorods adjacent to such hot spots are enhanced significantly because of plasmonic coupling. The polarization, wavelength, and spatial multiplexing of the hot spots can be realized by using an ultralow energy of only a few picojoule per pulse, which is two orders of magnitude lower than the value in the state-of-the-art technology that utilizes isolated gold nanorods. The ultralow recording energy reduces the cross-talk between different recording channels and makes it possible to realize rewriting function, improving significantly both the quality and capacity of optical data storage. It is anticipated that the demonstrated technology can facilitate the development of multidimensional optical data storage for a greener future. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  19. A virus-binding hot spot on human angiotensin-converting enzyme 2 is critical for binding of two different coronaviruses.

    PubMed

    Wu, Kailang; Chen, Lang; Peng, Guiqing; Zhou, Wenbo; Pennell, Christopher A; Mansky, Louis M; Geraghty, Robert J; Li, Fang

    2011-06-01

    How viruses evolve to select their receptor proteins for host cell entry is puzzling. We recently determined the crystal structures of NL63 coronavirus (NL63-CoV) and SARS coronavirus (SARS-CoV) receptor-binding domains (RBDs), each complexed with their common receptor, human angiotensin-converting enzyme 2 (hACE2), and proposed the existence of a virus-binding hot spot on hACE2. Here we investigated the function of this hypothetical hot spot using structure-guided biochemical and functional assays. The hot spot consists of a salt bridge surrounded by hydrophobic tunnel walls. Mutations that disturb the hot spot structure have significant effects on virus/receptor interactions, revealing critical energy contributions from the hot spot structure. The tunnel structure at the NL63-CoV/hACE2 interface is more compact than that at the SARS-CoV/hACE2 interface, and hence RBD/hACE2 binding affinities are decreased either by NL63-CoV mutations decreasing the tunnel space or by SARS-CoV mutations increasing the tunnel space. Furthermore, NL63-CoV RBD inhibits hACE2-dependent transduction by SARS-CoV spike protein, a successful application of the hot spot theory that has the potential to become a new antiviral strategy against SARS-CoV infections. These results suggest that the structural features of the hot spot on hACE2 were among the driving forces for the convergent evolution of NL63-CoV and SARS-CoV.

  20. Hot spots, indicator taxa, complementarity and optimal networks of taiga.

    PubMed Central

    Virolainen, K M; Ahlroth, P; Hyvärinen, E; Korkeamäki, E; Mattila, J; Päiivinen, J; Rintala, T; Suomi, T; Suhonen, J

    2000-01-01

    If hot spots for different taxa coincide, priority-setting surveys in a region could be carried out more cheaply by focusing on indicator taxa. Several previous studies show that hot spots of different taxa rarely coincide. However, in tropical areas indicator taxa may be used in selecting complementary networks to represent biodiversity as a whole. We studied beetles (Coleoptera), Heteroptera, polypores or bracket fungi (Polyporaceae) and vascular plants of old growth boreal taiga forests. Optimal networks for Heteroptera maximized the high overall species richness of beetles and vascular plants, but these networks were least favourable options for polypores. Polypores are an important group indicating the conservation value of old growth taiga forests. Random selection provided a better option. Thus, certain groups may function as good indicators for maximizing the overall species richness of some taxonomic groups, but all taxa should be examined separately. PMID:10885520

  1. Hot Spot and Whole-Tumor Enumeration of CD8+ Tumor-Infiltrating Lymphocytes Utilizing Digital Image Analysis Is Prognostic in Triple-Negative Breast Cancer.

    PubMed

    McIntire, Patrick J; Irshaid, Lina; Liu, Yifang; Chen, Zhengming; Menken, Faith; Nowak, Eugene; Shin, Sandra J; Ginter, Paula S

    2018-05-07

    CD8 + tumor-infiltrating lymphocytes (TILs) have emerged as a prognostic indicator in triple-negative breast cancer (TNBC). There is debate surrounding the prognostic value of hot spots for CD8 + TIL enumeration. We compared hot spot versus whole-tumor CD8 + TIL enumeration in prognosticating TNBC using immunohistochemistry on whole tissue sections and quantification by digital image analysis (Halo imaging analysis software; Indica Labs, Corrales, NM). A wide range of clinically relevant hot spot sizes was evaluated. CD8 + TIL enumeration was independently statistically significant for all hot spot sizes and whole-tumor annotations for disease-free survival by multivariate analysis. A 10× objective (2.2 mm diameter) hot spot was found to correlate significantly with overall survival (P = .04), while the remaining hot spots and whole-tumor CD8 + TIL enumeration did not (P > .05). Statistical significance was not demonstrated when comparing between hot spots and whole-tumor annotations, as the groups had overlapping confidence intervals. CD8 + TIL hot spot enumeration is equivalent to whole-tumor enumeration for prognostication in TNBC and may serve as a good alternative methodology in future studies and clinical practice. Copyright © 2018 Elsevier Inc. All rights reserved.

  2. Recombination or mutational hot spots in human mtDNA?

    PubMed

    Innan, Hideki; Nordborg, Magnus

    2002-07-01

    Awadalla, Eyre-Walker, and Maynard Smith (1999) recently argued that there might be recombination in human mitochondrial DNA (mtDNA). Their claim was based on their observation of decaying linkage disequilibrium (LD) as a function of physical distance. Their study was much criticized, and follow-up studies have failed to find any evidence for recombination. We argue that the criticisms levied, even if correct, could not possibly explain the findings of Awadalla, Eyre-Walker, and Maynard Smith (1999). Nonetheless, the test proposed by Awadalla, Eyre-Walker, and Maynard Smith (1999 ) is not robust because recombination is not the only explanation for decay of LD. We show that such a pattern can be caused by mutational hot spots as well. However, a closer look at the data suggests that the pattern observed was not caused by mutational hot spots but rather by chance. Thus, there appears to be no evidence for recombination in the mtDNA polymorphism data. In conclusion, we discuss the possibility of detecting recombination in mtDNA and the implications of its existence.

  3. Influence of Hot SPOT Features on the Shock Initiation of Heterogeneous Nitromethane

    NASA Astrophysics Data System (ADS)

    Dattelbaum, D. M.; Sheffield, S. A.; Stahl, D. B.; Dattelbaum, A. M.

    2009-12-01

    "Hot spots," or regions of localized high temperature and pressure that arise during the shock compression of heterogeneous materials, are known to highly influence the initiation characteristics of explosives. By introducing controlled-size particles at known number densities into otherwise homogeneous explosives, details about hot spot criticality can be mapped for a given material. Here, we describe a series of gas gun-driven plate impact experiments on nitromethane loaded with 40 μm silica beads at 6 wt%. Through the use of embedded electromagnetic gauges, we have gained insight into the initiation mechanisms as a function of the input shock pressure, and present a Pop-plot for the mixture, which is further compared to neat nitromethane.

  4. The Cause of the Hot Spot in Vegetation Canopies and Soils: Shadow-Hiding Versus Coherent Backscatter

    NASA Technical Reports Server (NTRS)

    Hapke, Bruce; DiMucci, Dominick; Nelson, Robert; Smythe, William

    1996-01-01

    Two different mechanisms, shadow-hiding and coherent backscatter, can cause a hot spot, or opposition effect, in the bidirectional reflectance of vegetation and soils. Because the two mechanisms sample different properties, it is important to know which one is primarily responsible in a given medium. This question can be answered by measuring the bidirectional reflectance in circularly polarized light. If the results of the limited experiments reported here can be extrapolated to a wider range of materials, it appears that the primary cause of the hot spot in most vegetation canopies and in moist, clumpy soils is shadow-hiding. However, in vegetation with large numbers of wavelength-sized structures, such as mosses, and in dry, fine-grained soils, the hot spot is dominated by coherent backscatter.

  5. KFC2: a knowledge-based hot spot prediction method based on interface solvation, atomic density, and plasticity features.

    PubMed

    Zhu, Xiaolei; Mitchell, Julie C

    2011-09-01

    Hot spots constitute a small fraction of protein-protein interface residues, yet they account for a large fraction of the binding affinity. Based on our previous method (KFC), we present two new methods (KFC2a and KFC2b) that outperform other methods at hot spot prediction. A number of improvements were made in developing these new methods. First, we created a training data set that contained a similar number of hot spot and non-hot spot residues. In addition, we generated 47 different features, and different numbers of features were used to train the models to avoid over-fitting. Finally, two feature combinations were selected: One (used in KFC2a) is composed of eight features that are mainly related to solvent accessible surface area and local plasticity; the other (KFC2b) is composed of seven features, only two of which are identical to those used in KFC2a. The two models were built using support vector machines (SVM). The two KFC2 models were then tested on a mixed independent test set, and compared with other methods such as Robetta, FOLDEF, HotPoint, MINERVA, and KFC. KFC2a showed the highest predictive accuracy for hot spot residues (True Positive Rate: TPR = 0.85); however, the false positive rate was somewhat higher than for other models. KFC2b showed the best predictive accuracy for hot spot residues (True Positive Rate: TPR = 0.62) among all methods other than KFC2a, and the False Positive Rate (FPR = 0.15) was comparable with other highly predictive methods. Copyright © 2011 Wiley-Liss, Inc.

  6. Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hot spots in mice.

    PubMed

    de Boer, Esther; Jasin, Maria; Keeney, Scott

    2015-08-15

    Meiotic recombination initiated by programmed double-strand breaks (DSBs) yields two types of interhomolog recombination products, crossovers and noncrossovers, but what determines whether a DSB will yield a crossover or noncrossover is not understood. In this study, we analyzed the influence of sex and chromosomal location on mammalian recombination outcomes by constructing fine-scale recombination maps in both males and females at two mouse hot spots located in different regions of the same chromosome. These include the most comprehensive maps of recombination hot spots in oocytes to date. One hot spot, located centrally on chromosome 1, behaved similarly in male and female meiosis: Crossovers and noncrossovers formed at comparable levels and ratios in both sexes. In contrast, at a distal hot spot, crossovers were recovered only in males even though noncrossovers were obtained at similar frequencies in both sexes. These findings reveal an example of extreme sex-specific bias in recombination outcome. We further found that estimates of relative DSB levels are surprisingly poor predictors of relative crossover frequencies between hot spots in males. Our results demonstrate that the outcome of mammalian meiotic recombination can be biased, that this bias can vary depending on location and cellular context, and that DSB frequency is not the only determinant of crossover frequency. © 2015 de Boer et al.; Published by Cold Spring Harbor Laboratory Press.

  7. The Median Isn't the Message: Elucidating Nutrient Hot spots and Hot Moments in a Sierra Nevada Forest Soil

    NASA Astrophysics Data System (ADS)

    Barnes, M. E.; Hart, S. C.; Johnson, D. W.; Meadows, M. W.

    2015-12-01

    Most biogeochemical studies in forests have concentrated on nutrient pools and transformations occurring at relatively large spatial scales (i.e., stand or small catchment), over monthly or annual time scales. Many of these studies have also focused on the average or medial values observed across the spatial or temporal scale studied, discounting outliers. However, extremely high values found consistently (hot spot) or infrequently (hot moment) at a given soil microsite may be critical for nutrient acquisition by organisms and nutrient retention by terrestrial ecosystems. We have been evaluating soil nutrient hot-spot and hot-moment phenomena vertically (to a 60-cm depth) and horizontally (2-m sampling interval within a 6 m x 6 m grid) in two areas within a mixed-conifer, Sierran forest experiencing a Mediterranean-type climate. Nutrient fluxes in space and time were measured using ion exchange resin capsules placed at various depths and collected at two times (first significant precipitation in fall and post-snowmelt in spring) per year. Our previous work over a single year showed that fluxes of Ca2+ and Mg2+ in mineral soil were substantially greater in the spring than in the fall, suggesting that soil water was a major factor in controlling these nutrient fluxes. The opposite pattern was found for NH4+ and Na+, where greater fluxes occurred following the first precipitation event in fall. Here, we report new data over two additional years at these same sites. Over the entire 3-year study, nutrient fluxes were greater in the fall for all mineral soil nutrients except Ca2+ and Mg2+. Calcium fluxes were consistent with previous results; however, Mg2+ demonstrated no statistical significance between fall and spring sampling dates. Generally, the number of high statistical outliers persisted through time for Ca2+ and Mg2+, suggesting hot spots for these nutrients. In contrast, large seasonal and annual changes in the number of high statistical outliers occurred for

  8. Alma Polarization Observations Of The Particle Accelerators In The Peculiar Hot Spot 3C 445 South

    NASA Astrophysics Data System (ADS)

    Orienti, Monica; Brunetti, G.; Mack, K.-H.; Nagai, H.; Paladino, R.; Prieto, M. A.

    2017-10-01

    Radio hot spots are bright and compact regions at the edges of powerful radio galaxies. In these regions the relativistic particles are reaccelerated by shocks produced by the interaction between the supersonic jets and the external environment. The discovery of synchrotron optical emission extending on kpc scale in some hot spots suggests that additional efficient and spatially distributed acceleration mechanisms must take place in order to compensate the severe radiative losses of optical emitting electrons. The key parameter to unveil the mechanism at work is the polarization intensity: high fractional polarization in the case of shocks, whereas low values or absence of polarization are expected in case of turbulence. In this contribution I will present results on full-polarization ALMA observations at 97 GHz of the hot spot 3C 445 South. This arc-shaped hot spot is characterized by two main components enshrouded by extended emission that is visible from radio to X-rays. The ALMA results, complemented by mutiband VLA, VLT, HST and Chandra data, will be used to shed a light on the complex distribution and nature of particle acceleration at the edge of powerful radio galaxies.

  9. Effects on Ridge Segmentation, Magmatic Plumbing and Eruption Style Caused by Weak Hot-spot to Ridge Interaction: the Central Indian Ridge and Rodrigues Hot-spot Couplet.

    NASA Astrophysics Data System (ADS)

    Murton, B. J.; Parson, L. M.; Sauter, D.

    2001-12-01

    The intermediate spreading, Central Indian Ridge (CIR) forms a couplet with a weak hot-spot of which the Rodrigues archipelago is an expression. Recently collected bathymetry shows that despite having little in the way of a significant topographic swell, the hot-spot is associated with a change in offset sense across adjacent transforms of the CIR causing the ridge to draw nearer to the Rodrigues island system. The most proximal ridge segment of the CIR is over 20km long and comprises three non-transform bounded sub-segments. The most northerly sub-segment has a shallow (<3000m), narrow (<5km) and featureless flat rift valley. TOBI sidescan sonar imagery shows that the segment is host to a 15km-long, 5km-wide single sheet flow. Elsewhere in the segment the valley floor is characterised by long (>5km), narrow (<1km) ridges that often terminate in conical seamounts. These ridges are the loci of some of the acoustically freshest volcanic facies in the rift valley. Samples recovered from these ridges have similar petrology along strike. With increasing distance south along the CIR, the ridge segments are typically 500m deeper than to the north. Here they are about 75km long and bounded by transform offsets that are 50 km long. However, even in the deepest parts of these segments, where the axial floor is over 4000m deep at the ridge-transform-intersections, there is fresh lava and other evidence for abundant volcanic activity. Within these segments, the rift valley comprises mainly seamounts and hummocky volcanic features. We believe the westward stepping trend of the CIR towards the Rodrigues islands is a function of the hot spot. The elevated temperature and volatile content to the west reduces mantle viscosity which, combined with thinner and hence weaker lithosphere, influencec the loci of initial oceanic rifting and the relative position of the ridge axis. The unusually great length of the northern segment has a similar origin with the presence of thin and weak

  10. Hot spot analysis for driving the development of hits into leads in fragment based drug discovery

    PubMed Central

    Hall, David R.; Ngan, Chi Ho; Zerbe, Brandon S.; Kozakov, Dima; Vajda, Sandor

    2011-01-01

    Fragment based drug design (FBDD) starts with finding fragment-sized compounds that are highly ligand efficient and can serve as a core moiety for developing high affinity leads. Although the core-bound structure of a protein facilitates the construction of leads, effective design is far from straightforward. We show that protein mapping, a computational method developed to find binding hot spots and implemented as the FTMap server, provides information that complements the fragment screening results and can drive the evolution of core fragments into larger leads with a minimal loss or, in some cases, even a gain in ligand efficiency. The method places small molecular probes, the size of organic solvents, on a dense grid around the protein, and identifies the hot spots as consensus clusters formed by clusters of several probes. The hot spots are ranked based on the number of probe clusters, which predicts the binding propensity of the subsites and hence their importance for drug design. Accordingly, with a single exception the main hot spot identified by FTMap binds the core compound found by fragment screening. The most useful information is provided by the neighboring secondary hot spots, indicating the regions where the core can be extended to increase its affinity. To quantify this information, we calculate the density of probes from mapping, which describes the binding propensity at each point, and show that the change in the correlation between a ligand position and the probe density upon extending or repositioning the core moiety predicts the expected change in ligand efficiency. PMID:22145575

  11. Measurement of the hot spot electron temperature in NIF ICF implosions using Krypton x-ray emission spectroscopy

    NASA Astrophysics Data System (ADS)

    Ma, T.; Chen, H.; Patel, P. K.; Schneider, M.; Barrios, M.; Berzak Hopkins, L.; Casey, D.; Chung, H.-K.; Hammel, B.; Jarrott, C.; Nora, R.; Pak, A.; Scott, H.; Spears, B.; Weber, C.

    2015-11-01

    The inference of ion temperature from neutron spectral measurements in indirect-drive ICF implosions is known to be sensitive to non-thermal velocity distributions in the fuel. The electron temperature (Te) inferred from dopant line ratios should not be sensitive to these bulk motions and hence may be a better measure of the thermal temperature of the hot spot. Here we describe a series of experiments to be conducted on the NIF where a small concentration of a mid-Z dopant (Krypton) is added to the fuel gas. The x-ray spectra is measured and the electron temperature is inferred from Kr line ratios. We also quantify the level of radiative cooling in the hot spot due to this mid-Z dopant. These experiments represent the first direct measurement of hot spot Te using spectroscopy, and we will describe the considerations for applying x-ray spectroscopy in such dense and non-uniform hot spots. This work performed under the auspices of U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  12. Visualization of hot spot formation in energetic materials under periodic mechanical excitation using phosphor thermography

    NASA Astrophysics Data System (ADS)

    Casey, Alex; Fenoglio, Gabriel; Detrinidad, Humberto

    2017-06-01

    Under mechanical excitation, energy is known to localize within an energetic material resulting in `hot spot' formation. While many formation mechanisms have been proposed, additional insight to heat generation mechanisms, the effect of binder/crystal interfaces, and predication capabilities can be gained by quantifying the initiation and growth of the hot spots. Phosphor thermography is a well established temperature sensing technique wherein an object's temperature is obtained by collecting the temperature dependent luminescence of an optically excited phosphor. Herein, the phosphor thermography technique has been applied to Dow Corning Sylgard® 184/octahydro 1,3,5,7 tetranitro 1,3,5,7 tetrazocine (HMX) composite materials under mechanical excitation in order to visualize the evolution of the temperature field, and thus hot spot formation, within the binder. Funded by AFOSR. Supported by the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program.

  13. Solvent-accessible surface area: How well can be applied to hot-spot detection?

    PubMed

    Martins, João M; Ramos, Rui M; Pimenta, António C; Moreira, Irina S

    2014-03-01

    A detailed comprehension of protein-based interfaces is essential for the rational drug development. One of the key features of these interfaces is their solvent accessible surface area profile. With that in mind, we tested a group of 12 SASA-based features for their ability to correlate and differentiate hot- and null-spots. These were tested in three different data sets, explicit water MD, implicit water MD, and static PDB structure. We found no discernible improvement with the use of more comprehensive data sets obtained from molecular dynamics. The features tested were shown to be capable of discerning between hot- and null-spots, while presenting low correlations. Residue standardization such as rel SASAi or rel/res SASAi , improved the features as a tool to predict ΔΔGbinding values. A new method using support machine learning algorithms was developed: SBHD (Sasa-Based Hot-spot Detection). This method presents a precision, recall, and F1 score of 0.72, 0.81, and 0.76 for the training set and 0.91, 0.73, and 0.81 for an independent test set. Copyright © 2013 Wiley Periodicals, Inc.

  14. Investigation of Hardness Change for Spot Welded Tailored Blank in Hot Stamping Using CCT and Deformation-CCT Diagrams

    NASA Astrophysics Data System (ADS)

    Yogo, Yasuhiro; Kurato, Nozomi; Iwata, Noritoshi

    2018-04-01

    When an outer panel of a B-pillar is manufactured with the hot stamping process, reinforcements are spot welded on its inner side. Before reinforcements are added, the microstructure of the outer panel is martensite. However, reheating during spot welding changes the martensite to ferrite, which has a lower hardness in the heat-affected zone than in other areas. If spot welding is conducted before hot stamping for making a spot welded tailored blank, the microstructure in the spot welded tailored blank after hot stamping is martensite. This sequence of processes avoids hardness reduction due to spot welding. In this study, the hardness and microstructure around spot welded parts of the tailored blank were investigated. The results clearly showed that areas close to the spot welded parts are severely stretched during hot stamping. In addition, stretching suppresses the martensitic phase transformation and reduces the hardness. To characterize this phenomenon, a simulation was conducted that considered the effects of pre-strain on the phase transformation. A continuous cooling transformation (CCT) diagram and a deformation continuous cooling transformation (DCCT) diagram were made in order to quantify the effect of the cooling rate and pre-strain on the phase transformation and hardness. The hardness was then calculated using the experimentally measured CCT and DCCT diagrams and the finite element analysis results. The calculated hardness was compared with the experimental hardness. Good agreement was found between the calculated and experimental results.

  15. Investigation of Hardness Change for Spot Welded Tailored Blank in Hot Stamping Using CCT and Deformation-CCT Diagrams

    NASA Astrophysics Data System (ADS)

    Yogo, Yasuhiro; Kurato, Nozomi; Iwata, Noritoshi

    2018-06-01

    When an outer panel of a B-pillar is manufactured with the hot stamping process, reinforcements are spot welded on its inner side. Before reinforcements are added, the microstructure of the outer panel is martensite. However, reheating during spot welding changes the martensite to ferrite, which has a lower hardness in the heat-affected zone than in other areas. If spot welding is conducted before hot stamping for making a spot welded tailored blank, the microstructure in the spot welded tailored blank after hot stamping is martensite. This sequence of processes avoids hardness reduction due to spot welding. In this study, the hardness and microstructure around spot welded parts of the tailored blank were investigated. The results clearly showed that areas close to the spot welded parts are severely stretched during hot stamping. In addition, stretching suppresses the martensitic phase transformation and reduces the hardness. To characterize this phenomenon, a simulation was conducted that considered the effects of pre-strain on the phase transformation. A continuous cooling transformation (CCT) diagram and a deformation continuous cooling transformation (DCCT) diagram were made in order to quantify the effect of the cooling rate and pre-strain on the phase transformation and hardness. The hardness was then calculated using the experimentally measured CCT and DCCT diagrams and the finite element analysis results. The calculated hardness was compared with the experimental hardness. Good agreement was found between the calculated and experimental results.

  16. Automated analysis of hot spot X-ray images at the National Ignition Facility

    NASA Astrophysics Data System (ADS)

    Khan, S. F.; Izumi, N.; Glenn, S.; Tommasini, R.; Benedetti, L. R.; Ma, T.; Pak, A.; Kyrala, G. A.; Springer, P.; Bradley, D. K.; Town, R. P. J.

    2016-11-01

    At the National Ignition Facility, the symmetry of the hot spot of imploding capsules is diagnosed by imaging the emitted x-rays using gated cameras and image plates. The symmetry of an implosion is an important factor in the yield generated from the resulting fusion process. The x-ray images are analyzed by decomposing the image intensity contours into Fourier and Legendre modes. This paper focuses on the additional protocols for the time-integrated shape analysis from image plates. For implosions with temperatures above ˜4 keV, the hard x-ray background can be utilized to infer the temperature of the hot spot.

  17. Automated analysis of hot spot X-ray images at the National Ignition Facility

    DOE PAGES

    Khan, S. F.; Izumi, N.; Glenn, S.; ...

    2016-09-02

    At the National Ignition Facility, the symmetry of the hot spot of imploding capsules is diagnosed by imaging the emitted x-rays using gated cameras and image plates. The symmetry of an implosion is an important factor in the yield generated from the resulting fusion process. The x-ray images are analyzed by decomposing the image intensity contours into Fourier and Legendre modes. This paper focuses on the additional protocols for the time-integrated shape analysis from image plates. Here, for implosions with temperatures above ~4keV, the hard x-ray background can be utilized to infer the temperature of the hot spot.

  18. Automated analysis of hot spot X-ray images at the National Ignition Facility

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Khan, S. F., E-mail: khan9@llnl.gov; Izumi, N.; Glenn, S.

    At the National Ignition Facility, the symmetry of the hot spot of imploding capsules is diagnosed by imaging the emitted x-rays using gated cameras and image plates. The symmetry of an implosion is an important factor in the yield generated from the resulting fusion process. The x-ray images are analyzed by decomposing the image intensity contours into Fourier and Legendre modes. This paper focuses on the additional protocols for the time-integrated shape analysis from image plates. For implosions with temperatures above ∼4 keV, the hard x-ray background can be utilized to infer the temperature of the hot spot.

  19. Automated analysis of hot spot X-ray images at the National Ignition Facility.

    PubMed

    Khan, S F; Izumi, N; Glenn, S; Tommasini, R; Benedetti, L R; Ma, T; Pak, A; Kyrala, G A; Springer, P; Bradley, D K; Town, R P J

    2016-11-01

    At the National Ignition Facility, the symmetry of the hot spot of imploding capsules is diagnosed by imaging the emitted x-rays using gated cameras and image plates. The symmetry of an implosion is an important factor in the yield generated from the resulting fusion process. The x-ray images are analyzed by decomposing the image intensity contours into Fourier and Legendre modes. This paper focuses on the additional protocols for the time-integrated shape analysis from image plates. For implosions with temperatures above ∼4 keV, the hard x-ray background can be utilized to infer the temperature of the hot spot.

  20. Jupiter Hot Spot Makes Trouble For Theory

    NASA Astrophysics Data System (ADS)

    2002-02-01

    A pulsating hot spot of X-rays has been discovered in the polar regions of Jupiter's upper atmosphere by NASA's Chandra X-ray Observatory. Previous theories cannot explain either the pulsations or the location of the hot spot, prompting scientists to search for a new process to produce Jupiter's X-rays. "The location of the X-ray hot spot effectively retires the existing explanation for Jupiter's X-ray emission, leaving us very unsure of its origin," said Randy Gladstone, of the Southwest Research Institute in San Antonio and lead author of a paper on the results in the Feb.28, 2002 issue of the journal Nature. "The source of ions that produce the X-rays must be a lot farther away from Jupiter than previously believed." Chandra observed Jupiter for 10 hours on Dec. 18, 2000, when NASA's Cassini spacecraft was flying by Jupiter on its way to Saturn. The X-ray observations revealed that most of the auroral X-rays come from a pulsating hot spot that appears at a fixed location near the north magnetic pole of Jupiter. Bright infrared and ultraviolet emissions have also been detected from this region in the past. The X-rays were observed to pulsate with a period of 45 minutes, similar to the period of high-latitude radio pulsations detected by NASA's Galileo and Cassini spacecraft. Jupiter X-ray/UV/Optical Composite Credit: X-ray: NASA/SWRI/R.Gladstone et al. UV: NASA/HST/J.Clarke et al. Optical: NASA/HST/R.Beebe et al. An aurora of X-ray light near Jupiter's polar regions had been detected by previous satellites. However, scientists were unable to determine the exact location of the X-rays. The accepted theory held that the X-rays were produced by energetic oxygen and sulfur ions that became excited as they ran into hydrogen and helium in Jupiter's atmosphere. Oxygen and sulfur ions (originally from Jupiter's moon Io) are energized while circulating around Jupiter's enormous magnetosphere. And, some - the purported X-ray producers - get dumped into Jupiter's atmosphere

  1. Line formation in the hot spot region of cataclysmic variable accretion disks

    NASA Technical Reports Server (NTRS)

    Elitzur, Moshe; Clarke, John T.; Kallman, T. R.

    1988-01-01

    The paper presents a theoretical analysis of the emission lines observed in the cataclysmic variable A0 Psc (=H2252-035), including detailed modeling of the hydrogen Balmer line emission. The analysis makes it possible to deduce the physical conditions in the so called 'hot spot', or 'bulge' region where the accretion column hits the rim of the accretion disk. It is concluded that the bulge is optically thick to the ionizing disk radiation. Consequently, its disk illuminated face is fully ionized whereas the side facing away from the disk is neutral, resulting in modulation of the observed emission lines with the orbital period. The density in the hot spot is about 5 x 10 to the 12th to 10 to the 13th/cu cm.

  2. Automated quantification of proliferation with automated hot-spot selection in phosphohistone H3/MART1 dual-stained stage I/II melanoma.

    PubMed

    Nielsen, Patricia Switten; Riber-Hansen, Rikke; Schmidt, Henrik; Steiniche, Torben

    2016-04-09

    Staging of melanoma includes quantification of a proliferation index, i.e., presumed melanocytic mitoses of H&E stains are counted manually in hot spots. Yet, its reproducibility and prognostic impact increases by immunohistochemical dual staining for phosphohistone H3 (PHH3) and MART1, which also may enable fully automated quantification by image analysis. To ensure manageable workloads and repeatable measurements in modern pathology, the study aimed to present an automated quantification of proliferation with automated hot-spot selection in PHH3/MART1-stained melanomas. Formalin-fixed, paraffin-embedded tissue from 153 consecutive stage I/II melanoma patients was immunohistochemically dual-stained for PHH3 and MART1. Whole slide images were captured, and the number of PHH3/MART1-positive cells was manually and automatically counted in the global tumor area and in a manually and automatically selected hot spot, i.e., a fixed 1-mm(2) square. Bland-Altman plots and hypothesis tests compared manual and automated procedures, and the Cox proportional hazards model established their prognostic impact. The mean difference between manual and automated global counts was 2.9 cells/mm(2) (P = 0.0071) and 0.23 cells per hot spot (P = 0.96) for automated counts in manually and automatically selected hot spots. In 77 % of cases, manual and automated hot spots overlapped. Fully manual hot-spot counts yielded the highest prognostic performance with an adjusted hazard ratio of 5.5 (95 % CI, 1.3-24, P = 0.024) as opposed to 1.3 (95 % CI, 0.61-2.9, P = 0.47) for automated counts with automated hot spots. The automated index and automated hot-spot selection were highly correlated to their manual counterpart, but altogether their prognostic impact was noticeably reduced. Because correct recognition of only one PHH3/MART1-positive cell seems important, extremely high sensitivity and specificity of the algorithm is required for prognostic purposes. Thus, automated

  3. Crack initiation and potential hot-spot formation around a cylindrical defect under dynamic compression

    NASA Astrophysics Data System (ADS)

    Ma, Xiao; Li, Xinguo; Zheng, Xianxu; Li, Kewu; Hu, Qiushi; Li, Jianling

    2017-11-01

    In recent decades, the hot-spot theory of condensed-phase explosives has been a compelling focus of scientific investigation attracting many researchers. The defect in the polymeric binder of the polymer-bonded explosive is called the intergranular defect. In this study, the real polymeric binder was substituted by poly(methyl methacrylate) (PMMA) as it is transparent and has similar thermodynamic properties to some binders. A set of modified split Hopkinson pressure bars equipped with a time-resolved shadowgraph was used to study the process of crack initiation and potential hot-spot formation around a cylindrical defect in PMMA. The new and significant phenomenon that the opening-mode crack emerged earlier than the shearing-mode crack from the cylindrical defect has been published for the first time in this paper. Furthermore, a two-dimensional numerical simulation was performed to show the evolution of both the stress field and the temperature field. The simulation results were in good agreement with the experiment. Finally, the law of potential hot-spot formation is discussed in detail.

  4. Hot-spot selection and evaluation methods for whole slice images of meningiomas and oligodendrogliomas.

    PubMed

    Swiderska, Zaneta; Markiewicz, Tomasz; Grala, Bartlomiej; Slodkowska, Janina

    2015-01-01

    The paper presents a combined method for an automatic hot-spot areas selection based on penalty factor in the whole slide images to support the pathomorphological diagnostic procedure. The studied slides represent the meningiomas and oligodendrogliomas tumor on the basis of the Ki-67/MIB-1 immunohistochemical reaction. It allows determining the tumor proliferation index as well as gives an indication to the medical treatment and prognosis. The combined method based on mathematical morphology, thresholding, texture analysis and classification is proposed and verified. The presented algorithm includes building a specimen map, elimination of hemorrhages from them, two methods for detection of hot-spot fields with respect to an introduced penalty factor. Furthermore, we propose localization concordance measure to evaluation localization of hot spot selection by the algorithms in respect to the expert's results. Thus, the results of the influence of the penalty factor are presented and discussed. It was found that the best results are obtained for 0.2 value of them. They confirm effectiveness of applied approach.

  5. Hot spot formation and chemical reaction initiation in shocked HMX crystals with nanovoids: a large-scale reactive molecular dynamics study.

    PubMed

    Zhou, Tingting; Lou, Jianfeng; Zhang, Yangeng; Song, Huajie; Huang, Fenglei

    2016-07-14

    We report million-atom reactive molecular dynamic simulations of shock initiation of β-cyclotetramethylene tetranitramine (β-HMX) single crystals containing nanometer-scale spherical voids. Shock induced void collapse and subsequent hot spot formation as well as chemical reaction initiation are observed which depend on the void size and impact strength. For an impact velocity of 1 km s(-1) and a void radius of 4 nm, the void collapse process includes three stages; the dominant mechanism is the convergence of upstream molecules toward the centerline and the downstream surface of the void forming flowing molecules. Hot spot formation also undergoes three stages, and the principal mechanism is kinetic energy transforming to thermal energy due to the collision of flowing molecules on the downstream surface. The high temperature of the hot spot initiates a local chemical reaction, and the breakage of the N-NO2 bond plays the key role in the initial reaction mechanism. The impact strength and void size have noticeable effects on the shock dynamical process, resulting in a variation of the predominant mechanisms leading to void collapse and hot spot formation. Larger voids or stronger shocks result in more intense hot spots and, thus, more violent chemical reactions, promoting more reaction channels and generating more reaction products in a shorter duration. The reaction products are mainly concentrated in the developed hot spot, indicating that the chemical reactivity of the hmx crystal is greatly enhanced by void collapse. The detailed information derived from this study can aid a thorough understanding of the role of void collapse in hot spot formation and the chemical reaction initiation of explosives.

  6. Hot-spot contributions in shocked high explosives from mesoscale ignition models

    NASA Astrophysics Data System (ADS)

    Levesque, G.; Vitello, P.; Howard, W. M.

    2013-06-01

    High explosive performance and sensitivity is strongly related to the mesoscale defect densities. Bracketing the population of mesoscale hot spots that are active in the shocked ignition of explosives is important for the development of predictive reactive flow models. By coupling a multiphysics-capable hydrodynamics code (ale3d) with a chemical kinetics solver (cheetah), we can parametrically analyze different pore sizes undergoing collapse in high pressure shock conditions with evolving physical parameter fields. Implementing first-principles based decomposition kinetics, burning hot spots are monitored, and the regimes of pore sizes that contribute significantly to burnt mass faction and those that survive thermal conduction on the time scales of ignition are elucidated. Comparisons are drawn between the thermal explosion theory and the multiphysics models for the determination of nominal pore sizes that burn significantly during ignition for the explosive 1,3,5-triamino-2,4,6-trinitrobenzene.

  7. The C-terminus hot spot region helps in the fibril formation of bacteriophage-associated hyaluronate lyase (HylP2).

    PubMed

    Shukla, Harish; Singh, Sudhir Kumar; Singh, Amit Kumar; Mitra, Kalyan; Akhtar, Md Sohail

    2015-09-23

    The bacteriophage encoded hyaluronate lyases (HylP and HylP2) degrade hyaluronan and other glycosaminoglycans. HylP2 forms a functional fibril under acidic conditions in which its N-terminus is proposed to form the fibrillar core, leading to nucleation and acceleration of fibril formation. Here we report the presence of a hot spot region (A144GVVVY149) towards the carboxy terminus of HylP2, essential for the acceleration of fibril formation. The 'hot spot' is observed to be inherently mutated for valines (A178AMVMY183) in case of HylP. The N- terminal swapped chimeras between these phage HLs ((N)HylP2(C)HylP and (N)HylP(C)HylP2) or HylP did not form fibrils at acidic pH. However, seeding of prefibrils of HylP2 recompensed nucleation and led to fibrillation in (N)HylP(C)HylP2. The V147A mutation in the 'hot spot' region abolished fibril formation in HylP2. The M179V and M181V double mutations in the 'hot spot' region of HylP led to fibrillation with the seeding of prefibrils. It appears that fibrillation in HylP2 even though is initiated by the N-terminus, is accelerated by the conserved 'hot spot' region in the C-terminus. A collagenous (Gly-X-Y)10 motif in the N-terminus and a mutated 'hot spot' region in the C-terminus of HylP affect fibrillar nucleation and acceleration respectively.

  8. Analysis of Biological Features Associated with Meiotic Recombination Hot and Cold Spots in Saccharomyces cerevisiae

    PubMed Central

    Hansen, Loren; Kim, Nak-Kyeong; Mariño-Ramírez, Leonardo; Landsman, David

    2011-01-01

    Meiotic recombination is not distributed uniformly throughout the genome. There are regions of high and low recombination rates called hot and cold spots, respectively. The recombination rate parallels the frequency of DNA double-strand breaks (DSBs) that initiate meiotic recombination. The aim is to identify biological features associated with DSB frequency. We constructed vectors representing various chromatin and sequence-based features for 1179 DSB hot spots and 1028 DSB cold spots. Using a feature selection approach, we have identified five features that distinguish hot from cold spots in Saccharomyces cerevisiae with high accuracy, namely the histone marks H3K4me3, H3K14ac, H3K36me3, and H3K79me3; and GC content. Previous studies have associated H3K4me3, H3K36me3, and GC content with areas of mitotic recombination. H3K14ac and H3K79me3 are novel predictions and thus represent good candidates for further experimental study. We also show nucleosome occupancy maps produced using next generation sequencing exhibit a bias at DSB hot spots and this bias is strong enough to obscure biologically relevant information. A computational approach using feature selection can productively be used to identify promising biological associations. H3K14ac and H3K79me3 are novel predictions of chromatin marks associated with meiotic DSBs. Next generation sequencing can exhibit a bias that is strong enough to lead to incorrect conclusions. Care must be taken when interpreting high throughput sequencing data where systematic biases have been documented. PMID:22242140

  9. Bulk hydrodynamic stability and turbulent saturation in compressing hot spots

    NASA Astrophysics Data System (ADS)

    Davidovits, Seth; Fisch, Nathaniel J.

    2018-04-01

    For hot spots compressed at constant velocity, we give a hydrodynamic stability criterion that describes the expected energy behavior of non-radial hydrodynamic motion for different classes of trajectories (in ρR — T space). For a given compression velocity, this criterion depends on ρR, T, and d T /d (ρR ) (the trajectory slope) and applies point-wise so that the expected behavior can be determined instantaneously along the trajectory. Among the classes of trajectories are those where the hydromotion is guaranteed to decrease and those where the hydromotion is bounded by a saturated value. We calculate this saturated value and find the compression velocities for which hydromotion may be a substantial fraction of hot-spot energy at burn time. The Lindl (Phys. Plasmas 2, 3933 (1995)] "attractor" trajectory is shown to experience non-radial hydrodynamic energy that grows towards this saturated state. Comparing the saturation value with the available detailed 3D simulation results, we find that the fluctuating velocities in these simulations reach substantial fractions of the saturated value.

  10. Legal space for syringe exchange programs in hot spots of injection drug use-related crime.

    PubMed

    Allen, Sean T; Ruiz, Monica S; Jones, Jeff; Turner, Monique M

    2016-04-26

    Copious evidence indicates that syringe exchange programs (SEPs) are effective structural interventions for HIV prevention among persons who inject drugs (PWID). The efficacy of SEPs in supporting the public health needs of PWID populations is partially dependent on their accessibility and consistent utilization among injectors. Research has shown that SEP access is an important predictor of PWID retention at SEPs, yet policies exist that may limit the geographic areas where SEP operations may legally occur. Since 2000 in the District of Columbia (DC), SEP operations have been subject to the 1000 Foot Rule (§48-1121), a policy that prohibits the distribution of "any needle or syringe for the hypodermic injection of any illegal drug in any area of the District of Columbia which is within 1000 feet of a public or private elementary or secondary school (including a public charter school)." The 1000 Foot Rule may impede SEP services in areas that are in urgent need for harm reduction services, such as locations where injections are happening in "real time" or where drugs are purchased or exchanged. We examined the effects of the 1000 Foot Rule on SEP operational space in injection drug use (IDU)-related crime (i.e., heroin possession or distribution) hot spots from 2000 to 2010. Data from the DC Metropolitan Police Department were used to identify IDU-related crime hot spots. School operation data were matched to a dataset that described the approximate physical property boundaries of land parcels. A 1000-ft buffer was applied to all school property boundaries. The overlap between the IDU-related crime hot spots and the school buffer zones was calculated by academic year. When overlaying the land space associated with IDU-related crime hot spots on the maps of school boundaries per the 1000-ft buffer zone stipulation, we found that the majority of land space in these locations was ineligible for legal SEP operations. More specifically, the ineligible space in the

  11. Plasmonic Heterodimers with Binding Site-Dependent Hot Spot for Surface-Enhanced Raman Scattering.

    PubMed

    Tian, Yuanyuan; Shuai, Zhenhua; Shen, Jingjing; Zhang, Lei; Chen, Shufen; Song, Chunyuan; Zhao, Baomin; Fan, Quli; Wang, Lianhui

    2018-06-01

    A novel plasmonic heterodimer nanostructure with a controllable self-assembled hot spot is fabricated by the conjugation of individual Au@Ag core-shell nanocubes (Au@Ag NCs) and varisized gold nanospheres (GNSs) via the biotin-streptavidin interaction from the ensemble to the single-assembly level. Due to their featured configurations, three types of heterogeneous nanostructures referred to as Vertice, Vicinity, and Middle are proposed and a single hot spot forms between the nanocube and nanosphere, which exhibits distinct diversity in surface plasmon resonance effect. Herein, the calculated surface-enhanced Raman scattering enhancement factors of the three types of heterodimers show a narrow distribution and can be tuned in orders of magnitude by controlling the size of GNSs onto individual Au@Ag NCs. Particularly, the Vertice heterodimer with unique configuration can provide extraordinary enhancement of the electric field for the single hot spot region due to the collaborative interaction of lightning rod effect and interparticle plasmon coupling effect. This established relationship between the architecture and the corresponding optical properties of the heterodimers provides the basis for creating controllable platforms which can be exploited in the applications of plasmonic devices, electronics, and biodetection. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  12. Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods.

    PubMed

    Lise, Stefano; Archambeau, Cedric; Pontil, Massimiliano; Jones, David T

    2009-10-30

    Alanine scanning mutagenesis is a powerful experimental methodology for investigating the structural and energetic characteristics of protein complexes. Individual amino-acids are systematically mutated to alanine and changes in free energy of binding (DeltaDeltaG) measured. Several experiments have shown that protein-protein interactions are critically dependent on just a few residues ("hot spots") at the interface. Hot spots make a dominant contribution to the free energy of binding and if mutated they can disrupt the interaction. As mutagenesis studies require significant experimental efforts, there is a need for accurate and reliable computational methods. Such methods would also add to our understanding of the determinants of affinity and specificity in protein-protein recognition. We present a novel computational strategy to identify hot spot residues, given the structure of a complex. We consider the basic energetic terms that contribute to hot spot interactions, i.e. van der Waals potentials, solvation energy, hydrogen bonds and Coulomb electrostatics. We treat them as input features and use machine learning algorithms such as Support Vector Machines and Gaussian Processes to optimally combine and integrate them, based on a set of training examples of alanine mutations. We show that our approach is effective in predicting hot spots and it compares favourably to other available methods. In particular we find the best performances using Transductive Support Vector Machines, a semi-supervised learning scheme. When hot spots are defined as those residues for which DeltaDeltaG >or= 2 kcal/mol, our method achieves a precision and a recall respectively of 56% and 65%. We have developed an hybrid scheme in which energy terms are used as input features of machine learning models. This strategy combines the strengths of machine learning and energy-based methods. Although so far these two types of approaches have mainly been applied separately to biomolecular problems

  13. Rapid experimental SAD phasing and hot-spot identification with halogenated fragments

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bauman, Joseph D.; Harrison, Jerry Joe E. K.; Arnold, Eddy

    2016-01-01

    Through X-ray crystallographic fragment screening, 4-bromopyrazole was discovered to be a `magic bullet' that is capable of binding at many of the ligand `hot spots' found in HIV-1 reverse transcriptase (RT). The binding locations can be in pockets that are `hidden' in the unliganded crystal form, allowing rapid identification of these sites forin silicoscreening. In addition to hot-spot identification, this ubiquitous yet specific binding provides an avenue for X-ray crystallographic phase determination, which can be a significant bottleneck in the determination of the structures of novel proteins. The anomalous signal from 4-bromopyrazole or 4-iodopyrazole was sufficient to determine the structuresmore » of three proteins (HIV-1 RT, influenza A endonuclease and proteinase K) by single-wavelength anomalous dispersion (SAD) from single crystals. Both compounds are inexpensive, readily available, safe and very soluble in DMSO or water, allowing efficient soaking into crystals.« less

  14. Hot spot-derived shock initiation phenomena in heterogeneous nitromethane

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dattelbaum, Dana M; Sheffield, Stephen A; Stahl, David B

    2009-01-01

    The addition of solid silica particles to gelled nitromethane offers a tractable model system for interrogating the role of impedance mismatches as one type of hot spot 'seed' on the initiation behaviors of explosive formulations. Gas gun-driven plate impact experiments are used to produce well-defined shock inputs into nitromethane-silica mixtures containing size-selected silica beads at 6 wt%. The Pop-plots or relationships between shock input pressure and rundistance (or time)-to-detonation for mixtures containing small (1-4 {micro}m) and large (40 {micro}m) beads are presented. Overall, the addition of beads was found to influence the shock sensitivity of the mixtures, with the smallermore » beads being more sensitizing than the larger beads, lowering the shock initiation threshold for the same run distance to detonation compared with neat nitromethane. In addition, the use of embedded electromagnetic gauges provides detailed information pertaining to the mechanism of the build-up to detonation and associated reactive flow. Of note, an initiation mechanism characteristic of homogeneous liquid explosives, such as nitromethane, was observed in the nitromethane-40 {micro}m diameter silica samples at high shock input pressures, indicating that the influence of hot spots on the initiation process was minimal under these conditions.« less

  15. The physics of long- and intermediate-wavelength asymmetries of the hot spot: Compression hydrodynamics and energetics

    DOE PAGES

    Bose, A.; Betti, R.; Shvarts, D.; ...

    2017-10-03

    To achieve ignition with inertial confinement fusion (ICF), it is important to under- stand the effect of asymmetries on the hydrodynamics and energetics of the compres- sion. This paper describes a theoretical model for the compression of distorted hot spots, and quantitative estimates using hydrodynamic simulations. The asymmetries are categorized into low (Ι < 6) and intermediate (Ι < A < 40) modes by comparison of the wavelength with the thermal-diffusion scale length. Long-wavelength modes introduce substantial nonradial motion, whereas intermediate-wavelength modes in- volve more cooling by thermal ablation. We discover that for distorted hot spots, the measured neutron-averaged propertiesmore » can be very different from the real hydro- dynamic conditions. This is because mass ablation driven my thermal conduction introduces flows in the Rayleigh–Taylor bubbles, this results in pressure variation, in addition to temperature variation between the bubbles and the neutron-producing region (~1 keV for intermediate modes). The differences are less pronounced for long-wavelength asymmetries since the bubbles are relatively hot and sustain fusion reactions. The yield degradation$-$ with respect to the symmetric$-$ results primarily from a reduction in the hot-spot pressure for low modes and from a reduction in burn volume for intermediate modes. It is shown that the degradation in internal energy of the hot-spot is equivalent for both categories, and is equal to the total residual energy in the shell including the bubbles. This quantity is correlated with the shell residual kinetic energy for low-modes, and includes the kinetic energy in the bubbles for mid-modes.« less

  16. The physics of long- and intermediate-wavelength asymmetries of the hot spot: Compression hydrodynamics and energetics

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bose, A.; Betti, R.; Shvarts, D.

    To achieve ignition with inertial confinement fusion (ICF), it is important to under- stand the effect of asymmetries on the hydrodynamics and energetics of the compres- sion. This paper describes a theoretical model for the compression of distorted hot spots, and quantitative estimates using hydrodynamic simulations. The asymmetries are categorized into low (Ι < 6) and intermediate (Ι < A < 40) modes by comparison of the wavelength with the thermal-diffusion scale length. Long-wavelength modes introduce substantial nonradial motion, whereas intermediate-wavelength modes in- volve more cooling by thermal ablation. We discover that for distorted hot spots, the measured neutron-averaged propertiesmore » can be very different from the real hydro- dynamic conditions. This is because mass ablation driven my thermal conduction introduces flows in the Rayleigh–Taylor bubbles, this results in pressure variation, in addition to temperature variation between the bubbles and the neutron-producing region (~1 keV for intermediate modes). The differences are less pronounced for long-wavelength asymmetries since the bubbles are relatively hot and sustain fusion reactions. The yield degradation$-$ with respect to the symmetric$-$ results primarily from a reduction in the hot-spot pressure for low modes and from a reduction in burn volume for intermediate modes. It is shown that the degradation in internal energy of the hot-spot is equivalent for both categories, and is equal to the total residual energy in the shell including the bubbles. This quantity is correlated with the shell residual kinetic energy for low-modes, and includes the kinetic energy in the bubbles for mid-modes.« less

  17. Five-way smoking status classification using text hot-spot identification and error-correcting output codes.

    PubMed

    Cohen, Aaron M

    2008-01-01

    We participated in the i2b2 smoking status classification challenge task. The purpose of this task was to evaluate the ability of systems to automatically identify patient smoking status from discharge summaries. Our submission included several techniques that we compared and studied, including hot-spot identification, zero-vector filtering, inverse class frequency weighting, error-correcting output codes, and post-processing rules. We evaluated our approaches using the same methods as the i2b2 task organizers, using micro- and macro-averaged F1 as the primary performance metric. Our best performing system achieved a micro-F1 of 0.9000 on the test collection, equivalent to the best performing system submitted to the i2b2 challenge. Hot-spot identification, zero-vector filtering, classifier weighting, and error correcting output coding contributed additively to increased performance, with hot-spot identification having by far the largest positive effect. High performance on automatic identification of patient smoking status from discharge summaries is achievable with the efficient and straightforward machine learning techniques studied here.

  18. Using spatial statistics to identify emerging hot spots of forest loss

    NASA Astrophysics Data System (ADS)

    Harris, Nancy L.; Goldman, Elizabeth; Gabris, Christopher; Nordling, Jon; Minnemeyer, Susan; Ansari, Stephen; Lippmann, Michael; Bennett, Lauren; Raad, Mansour; Hansen, Matthew; Potapov, Peter

    2017-02-01

    As sources of data for global forest monitoring grow larger, more complex and numerous, data analysis and interpretation become critical bottlenecks for effectively using them to inform land use policy discussions. Here in this paper, we present a method that combines big data analytical tools with Emerging Hot Spot Analysis (ArcGIS) to identify statistically significant spatiotemporal trends of forest loss in Brazil, Indonesia and the Democratic Republic of Congo (DRC) between 2000 and 2014. Results indicate that while the overall rate of forest loss in Brazil declined over the 14-year time period, spatiotemporal patterns of loss shifted, with forest loss significantly diminishing within the Amazonian states of Mato Grosso and Rondônia and intensifying within the cerrado biome. In Indonesia, forest loss intensified in Riau province in Sumatra and in Sukamara and West Kotawaringin regencies in Central Kalimantan. Substantial portions of West Kalimantan became new and statistically significant hot spots of forest loss in the years 2013 and 2014. Similarly, vast areas of DRC emerged as significant new hot spots of forest loss, with intensified loss radiating out from city centers such as Beni and Kisangani. While our results focus on identifying significant trends at the national scale, we also demonstrate the scalability of our approach to smaller or larger regions depending on the area of interest and specific research question involved. When combined with other contextual information, these statistical data models can help isolate the most significant clusters of loss occurring over dynamic forest landscapes and provide more coherent guidance for the allocation of resources for forest monitoring and enforcement efforts.

  19. Afar-wide Crustal Strain Field from Multiple InSAR Tracks

    NASA Astrophysics Data System (ADS)

    Pagli, C.; Wright, T. J.; Wang, H.; Calais, E.; Bennati Rassion, L. S.; Ebinger, C. J.; Lewi, E.

    2010-12-01

    Onset of a rifting episode in the Dabbahu volcanic segment, Afar (Ethiopia), in 2005 renewed interest in crustal deformation studies in the area. As a consequence, an extensive geodetic data set, including InSAR and GPS measurements have been acquired over Afar and hold great potential towards improving our understanding of the extensional processes that operate during the final stages of continental rupture. The current geodetic observational and modelling strategy has focused on detailed, localised studies of dyke intrusions and eruptions mainly in the Dabbahu segment. However, an eruption in the Erta ‘Ale volcanic segment in 2008, and cluster of earthquakes observed in the Tat Ale segment, are testament to activity elsewhere in Afar. Here we make use of the vast geodetic dataset available to obtain strain information over the whole Afar depression. A systematic analysis of all the volcanic segments, including Dabbahu, Manda-Hararo, Alayta, Tat ‘Ale Erta Ale and the Djibouti deformation zone, is undertaken. We use InSAR data from multiple tracks together with available GPS measurements to obtain a velocity field model for Afar. We use over 300 radar images acquired by the Envisat satellite in both descending and ascending orbits, from 12 distinct tracks in image and wide swath modes, spanning the time period from October 2005 to present time. We obtain the line-of-sight deformation rates from each InSAR track using a network approach and then combine the InSAR velocities with the GPS observations, as suggested by Wright and Wang (2010) following the method of England and Molnar (1997). A mesh is constructed over the Afar area and then we solve for the horizontal and vertical velocities on each node. The resultant full 3D Afar-wide velocity field shows where current strains are being accumulated within the various volcanic segments of Afar, the width of the plate boundary deformation zone and possible connections between distinct volcanic segments on a

  20. Saturn's Hot Spot

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This is the sharpest image of Saturn's temperature emissions taken from the ground; it is a mosaic of 35 individual exposures made at the W.M. Keck I Observatory, Mauna Kea, Hawaii on Feb. 4, 2004.

    The images to create this mosaic were taken with infrared radiation. The mosaic was taken at a wavelength near 17.65 microns and is sensitive to temperatures in Saturn's upper troposphere. The prominent hot spot at the bottom of the image is right at Saturn's south pole. The warming of the southern hemisphere was expected, as Saturn was just past southern summer solstice, but the abrupt changes in temperature with latitude were not expected. The tropospheric temperature increases toward the pole abruptly near 70 degrees latitude from 88 to 89 Kelvin (-301 to -299 degrees Fahrenheit) and then to 91 Kelvin (-296 degrees Fahrenheit) right at the pole.

    Ring particles are not at a uniform temperature everywhere in their orbit around Saturn. The ring particles are orbiting clockwise in this image. Particles are coldest just after having cooled down in Saturn's shadow (lower left). As they orbit Saturn, the particles increase in temperature up to a maximum (lower right) just before passing behind Saturn again in shadow.

    A small section of the ring image is missing because of incomplete mosaic coverage during the observing sequence.

  1. [Rapid detection of hot spot mutations of FGFR3 gene with PCR-high resolution melting assay].

    PubMed

    Li, Shan; Wang, Han; Su, Hua; Gao, Jinsong; Zhao, Xiuli

    2017-08-10

    To identify the causative mutations in five individuals affected with dyschondroplasia and develop an efficient procedure for detecting hot spot mutations of the FGFR3 gene. Genomic DNA was extracted from peripheral blood samples with a standard phenol/chloroform method. PCR-Sanger sequencing was used to analyze the causative mutations in the five probands. PCR-high resolution melting (HRM) was developed to detect the identified mutations. A c.1138G>A mutation in exon 8 was found in 4 probands, while a c.1620C>G mutation was found in exon 11 of proband 5 whom had a mild phenotype. All patients were successfully distinguished from healthy controls with the PCR-HRM method. The results of HRM analysis were highly consistent with that of Sanger sequencing. The Gly380Arg and Asn540Lys are hot spot mutations of the FGFR3 gene among patients with ACH/HCH. PCR-HRM analysis is more efficient for detecting hot spot mutations of the FGFR3 gene.

  2. Practice-Based Research: Ex Post Facto Evaluation of Evidence-Based Police Practices Implemented in Residential Burglary Micro-Time Hot Spots.

    PubMed

    Santos, Roberto G; Santos, Rachel Boba

    2015-10-01

    Police agencies around the country are implementing various strategies to reduce crime in their communities that need to be evaluated. These strategies are often based on systematic crime analysis and are focused on crime occurring in hot spots, which are areas of disproportionate amounts of crime. This article takes a practice-based research approach to evaluate whether evidence-based police strategies implemented by one police agency as its normal everyday crime reduction practice are effective in reducing residential burglary incidents in micro-time hot spots. A quasi-experimental ex post facto design is employed using 5 years of data from one police agency that has institutionalized the identification and response to micro-time hot spots into its day-to-day practices. Propensity score matching is used to match 54 pairs of micro-time hot spots using logistic regression to compute the propensity scores and greedy 1 to 1 matching with a caliper width of 0.5 of the standard deviation of the logit to match the cases. Independent t-tests show that tactical police response to micro-time hot spots can lead to significant reductions in residential burglary incidents without the spatial displacement of crime. Tactical police responses that seek to achieve short-term reductions in crime appear to be well suited for micro-time hot spots since they are, by nature, short term. Importantly, the conclusions are based on the evaluation of an agency's systematic implementation of the evidence-based practices as its normal practices and not for the sake of research. © The Author(s) 2015.

  3. Hot-spot investigations of utility scale panel configurations

    NASA Technical Reports Server (NTRS)

    Arnett, J. C.; Dally, R. B.; Rumburg, J. P.

    1984-01-01

    The causes of array faults and efforts to mitigate their effects are examined. Research is concentrated on the panel for the 900 kw second phase of the Sacramento Municipal Utility District (SMUD) project. The panel is designed for hot spot tolerance without comprising efficiency under normal operating conditions. Series/paralleling internal to each module improves tolerance in the power quadrant to cell short or open circuits. Analtyical methods are developed for predicting worst case shade patterns and calculating the resultant cell temperature. Experiments conducted on a prototype panel support the analytical calculations.

  4. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... (“Localized CO, PM10, and PM2.5 violations”) must be based on quantitative analysis using the applicable air... § 93.116 may be based on either: (i) Quantitative methods that represent reasonable and common... hot-spot analyses. (1) The hot-spot demonstration required by § 93.116 must be based on quantitative...

  5. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... (“Localized CO, PM10, and PM2.5 violations”) must be based on quantitative analysis using the applicable air... § 93.116 may be based on either: (i) Quantitative methods that represent reasonable and common... hot-spot analyses. (1) The hot-spot demonstration required by § 93.116 must be based on quantitative...

  6. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... (“Localized CO, PM10, and PM2.5 violations”) must be based on quantitative analysis using the applicable air... § 93.116 may be based on either: (i) Quantitative methods that represent reasonable and common... hot-spot analyses. (1) The hot-spot demonstration required by § 93.116 must be based on quantitative...

  7. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... (“Localized CO, PM10, and PM2.5 violations”) must be based on quantitative analysis using the applicable air... § 93.116 may be based on either: (i) Quantitative methods that represent reasonable and common... hot-spot analyses. (1) The hot-spot demonstration required by § 93.116 must be based on quantitative...

  8. A computational tool to predict the evolutionarily conserved protein-protein interaction hot-spot residues from the structure of the unbound protein.

    PubMed

    Agrawal, Neeraj J; Helk, Bernhard; Trout, Bernhardt L

    2014-01-21

    Identifying hot-spot residues - residues that are critical to protein-protein binding - can help to elucidate a protein's function and assist in designing therapeutic molecules to target those residues. We present a novel computational tool, termed spatial-interaction-map (SIM), to predict the hot-spot residues of an evolutionarily conserved protein-protein interaction from the structure of an unbound protein alone. SIM can predict the protein hot-spot residues with an accuracy of 36-57%. Thus, the SIM tool can be used to predict the yet unknown hot-spot residues for many proteins for which the structure of the protein-protein complexes are not available, thereby providing a clue to their functions and an opportunity to design therapeutic molecules to target these proteins. Copyright © 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

  9. Assessing Statistically Significant Heavy-Metal Concentrations in Abandoned Mine Areas via Hot Spot Analysis of Portable XRF Data

    PubMed Central

    Kim, Sung-Min; Choi, Yosoon

    2017-01-01

    To develop appropriate measures to prevent soil contamination in abandoned mining areas, an understanding of the spatial variation of the potentially toxic trace elements (PTEs) in the soil is necessary. For the purpose of effective soil sampling, this study uses hot spot analysis, which calculates a z-score based on the Getis-Ord Gi* statistic to identify a statistically significant hot spot sample. To constitute a statistically significant hot spot, a feature with a high value should also be surrounded by other features with high values. Using relatively cost- and time-effective portable X-ray fluorescence (PXRF) analysis, sufficient input data are acquired from the Busan abandoned mine and used for hot spot analysis. To calibrate the PXRF data, which have a relatively low accuracy, the PXRF analysis data are transformed using the inductively coupled plasma atomic emission spectrometry (ICP-AES) data. The transformed PXRF data of the Busan abandoned mine are classified into four groups according to their normalized content and z-scores: high content with a high z-score (HH), high content with a low z-score (HL), low content with a high z-score (LH), and low content with a low z-score (LL). The HL and LH cases may be due to measurement errors. Additional or complementary surveys are required for the areas surrounding these suspect samples or for significant hot spot areas. The soil sampling is conducted according to a four-phase procedure in which the hot spot analysis and proposed group classification method are employed to support the development of a sampling plan for the following phase. Overall, 30, 50, 80, and 100 samples are investigated and analyzed in phases 1–4, respectively. The method implemented in this case study may be utilized in the field for the assessment of statistically significant soil contamination and the identification of areas for which an additional survey is required. PMID:28629168

  10. Assessing Statistically Significant Heavy-Metal Concentrations in Abandoned Mine Areas via Hot Spot Analysis of Portable XRF Data.

    PubMed

    Kim, Sung-Min; Choi, Yosoon

    2017-06-18

    To develop appropriate measures to prevent soil contamination in abandoned mining areas, an understanding of the spatial variation of the potentially toxic trace elements (PTEs) in the soil is necessary. For the purpose of effective soil sampling, this study uses hot spot analysis, which calculates a z -score based on the Getis-Ord Gi* statistic to identify a statistically significant hot spot sample. To constitute a statistically significant hot spot, a feature with a high value should also be surrounded by other features with high values. Using relatively cost- and time-effective portable X-ray fluorescence (PXRF) analysis, sufficient input data are acquired from the Busan abandoned mine and used for hot spot analysis. To calibrate the PXRF data, which have a relatively low accuracy, the PXRF analysis data are transformed using the inductively coupled plasma atomic emission spectrometry (ICP-AES) data. The transformed PXRF data of the Busan abandoned mine are classified into four groups according to their normalized content and z -scores: high content with a high z -score (HH), high content with a low z -score (HL), low content with a high z -score (LH), and low content with a low z -score (LL). The HL and LH cases may be due to measurement errors. Additional or complementary surveys are required for the areas surrounding these suspect samples or for significant hot spot areas. The soil sampling is conducted according to a four-phase procedure in which the hot spot analysis and proposed group classification method are employed to support the development of a sampling plan for the following phase. Overall, 30, 50, 80, and 100 samples are investigated and analyzed in phases 1-4, respectively. The method implemented in this case study may be utilized in the field for the assessment of statistically significant soil contamination and the identification of areas for which an additional survey is required.

  11. [Hot spot mutation screening of RYR1 gene in diagnosis of congenital myopathies].

    PubMed

    Chang, Xing-zhi; Jin, Yi-wen; Wang, Jing-min; Yuan, Yun; Xiong, Hui; Wang, Shuang; Qin, Jiong

    2014-10-18

    To detect hot spot mutation of RYR1 gene in 15 cases of congenital myopathy with different subtypes, and to discuss the value of RYR1 gene hot spot mutation detection in the diagnosis of the disease. Clinical data were collected in all the patients, including clinical manifestations and signs, serum creatine kinase, electromyography. Fourteen of the patients accepted the muscle biopsy. Hot spot mutation in the C-terminal of RYR1 gene (extron 96-106) had been detected in all the 15 patients. All the patients presented with motor development delay, and they could walk at the age of 1 to 3.5 years,but were always easy to fall and could not run or jump. There were no progressive deteriorations. Physical examination showed different degrees of muscle weakness and hypotonia.High arched palates were noted in 3 patients. The serum levels of creatine kinase were mildly elevated in 3 cases, and normal in 12 cases. Electromyography showed "myogenic" features in 11 patients, being normal in the other 4 patients. Muscle biopsy pathologic diagnosis was the central core disease in 3 patients, the central nuclei in 2 patients, the congenital fiber type disproportion in 2 patients, the nameline myopathy in 3 patient, the multiminicore disease in 1 patient, and nonspecific minimal changes in the other 3 patients; one patient was diagnosed with central core disease according to positive family history and gene mutation. In the family case (Patient 2) of central core disease, the c.14678G>A (p.Arg4893Gln) mutation in 102 extron of RYR1 was identified in three members of the family, which had been reported to be a pathogenic mutation. The c.14596A>G(p.Lys4866Gln) mutation in 101 extron was found in one patient with central core disease(Patient 1), and the c.14719G>A(p.Gly4907Ser) mutation in 102 extron was found in another case of the central core disease(Patient 3).The same novel mutation was verified in one of the patients' (Patient 3) asymptomatic father. Congenital myopathies in

  12. The Uses and Impacts of Mobile Computing Technology in Hot Spots Policing.

    PubMed

    Koper, Christopher S; Lum, Cynthia; Hibdon, Julie

    2015-12-01

    Recent technological advances have much potential for improving police performance, but there has been little research testing whether they have made police more effective in reducing crime. To study the uses and crime control impacts of mobile computing technology in the context of geographically focused "hot spots" patrols. An experiment was conducted using 18 crime hot spots in a suburban jurisdiction. Nine of these locations were randomly selected to receive additional patrols over 11 weeks. Researchers studied officers' use of mobile information technology (IT) during the patrols using activity logs and interviews. Nonrandomized subgroup and multivariate analyses were employed to determine if and how the effects of the patrols varied based on these patterns. Officers used mobile computing technology primarily for surveillance and enforcement (e.g., checking automobile license plates and running checks on people during traffic stops and field interviews), and they noted both advantages and disadvantages to its use. Officers did not often use technology for strategic problem-solving and crime prevention. Given sufficient (but modest) dosages, the extra patrols reduced crime at the hot spots, but this effect was smaller in places where officers made greater use of technology. Basic applications of mobile computing may have little if any direct, measurable impact on officers' ability to reduce crime in the field. Greater training and emphasis on strategic uses of IT for problem-solving and crime prevention, and greater attention to its behavioral effects on officers, might enhance its application for crime reduction. © The Author(s) 2016.

  13. Comprehensive Experimental and Computational Analysis of Binding Energy Hot Spots at the NF-κB Essential Modulator (NEMO)/IKKβ Protein-Protein Interface

    PubMed Central

    Golden, Mary S.; Cote, Shaun M.; Sayeg, Marianna; Zerbe, Brandon S.; Villar, Elizabeth A.; Beglov, Dmitri; Sazinsky, Stephen L.; Georgiadis, Rosina M.; Vajda, Sandor; Kozakov, Dima; Whitty, Adrian

    2013-01-01

    We report a comprehensive analysis of binding energy hot spots at the protein-protein interaction (PPI) interface between NF-κB Essential Modulator (NEMO) and IκB kinase subunit β (IKKβ), an interaction that is critical for NF-κB pathway signaling, using experimental alanine scanning mutagenesis and also the FTMap method for computational fragment screening. The experimental results confirm that the previously identified NBD region of IKKβ contains the highest concentration of hot spot residues, the strongest of which are W739, W741 and L742 (ΔΔG = 4.3, 3.5 and 3.2 kcal/mol, respectively). The region occupied by these residues defines a potentially druggable binding site on NEMO that extends for ~16 Å to additionally include the regions that bind IKKβ L737 and F734. NBD residues D738 and S740 are also important for binding but do not make direct contact with NEMO, instead likely acting to stabilize the active conformation of surrounding residues. We additionally found two previously unknown hot spot regions centered on IKKβ residues L708/V709 and L719/I723. The computational approach successfully identified all three hot spot regions on IKKβ. Moreover, the method was able to accurately quantify the energetic importance of all hot spots residues involving direct contact with NEMO. Our results provide new information to guide the discovery of small molecule inhibitors that target the NEMO/IKKβ interaction. They additionally clarify the structural and energetic complementarity between “pocket-forming” and “pocket occupying” hot spot residues, and further validate computational fragment mapping as a method for identifying hot spots at PPI interfaces. PMID:23506214

  14. Complementarity of stability patches at the interfaces of protein complexes: Implication for the structural organization of energetic hot spots.

    PubMed

    Kuttner, Yosef Y; Engel, Stanislav

    2018-02-01

    A rational design of protein complexes with defined functionalities and of drugs aimed at disrupting protein-protein interactions requires fundamental understanding of the mechanisms underlying the formation of specific protein complexes. Efforts to develop efficient small-molecule or protein-based binders often exploit energetic hot spots on protein surfaces, namely, the interfacial residues that provide most of the binding free energy in the complex. The molecular basis underlying the unusually high energy contribution of the hot spots remains obscure, and its elucidation would facilitate the design of interface-targeted drugs. To study the nature of the energetic hot spots, we analyzed the backbone dynamic properties of contact surfaces in several protein complexes. We demonstrate that, in most complexes, the backbone dynamic landscapes of interacting surfaces form complementary "stability patches," in which static areas from the opposing surfaces superimpose, and that these areas are predominantly located near the geometric center of the interface. We propose that a diminished enthalpy-entropy compensation effect augments the degree to which residues positioned within the complementary stability patches contribute to complex affinity, thereby giving rise to the energetic hot spots. These findings offer new insights into the nature of energetic hot spots and the role that backbone dynamics play in facilitating intermolecular recognition. Mapping the interfacial stability patches may provide guidance for protein engineering approaches aimed at improving the stability of protein complexes and could facilitate the design of ligands that target complex interfaces. © 2017 Wiley Periodicals, Inc.

  15. Comparison of the manual, semiautomatic, and automatic selection and leveling of hot spots in whole slide images for Ki-67 quantification in meningiomas.

    PubMed

    Swiderska, Zaneta; Korzynska, Anna; Markiewicz, Tomasz; Lorent, Malgorzata; Zak, Jakub; Wesolowska, Anna; Roszkowiak, Lukasz; Slodkowska, Janina; Grala, Bartlomiej

    2015-01-01

    Background. This paper presents the study concerning hot-spot selection in the assessment of whole slide images of tissue sections collected from meningioma patients. The samples were immunohistochemically stained to determine the Ki-67/MIB-1 proliferation index used for prognosis and treatment planning. Objective. The observer performance was examined by comparing results of the proposed method of automatic hot-spot selection in whole slide images, results of traditional scoring under a microscope, and results of a pathologist's manual hot-spot selection. Methods. The results of scoring the Ki-67 index using optical scoring under a microscope, software for Ki-67 index quantification based on hot spots selected by two pathologists (resp., once and three times), and the same software but on hot spots selected by proposed automatic methods were compared using Kendall's tau-b statistics. Results. Results show intra- and interobserver agreement. The agreement between Ki-67 scoring with manual and automatic hot-spot selection is high, while agreement between Ki-67 index scoring results in whole slide images and traditional microscopic examination is lower. Conclusions. The agreement observed for the three scoring methods shows that automation of area selection is an effective tool in supporting physicians and in increasing the reliability of Ki-67 scoring in meningioma.

  16. Comparison of the Manual, Semiautomatic, and Automatic Selection and Leveling of Hot Spots in Whole Slide Images for Ki-67 Quantification in Meningiomas

    PubMed Central

    Swiderska, Zaneta; Korzynska, Anna; Markiewicz, Tomasz; Lorent, Malgorzata; Zak, Jakub; Wesolowska, Anna; Roszkowiak, Lukasz; Slodkowska, Janina; Grala, Bartlomiej

    2015-01-01

    Background. This paper presents the study concerning hot-spot selection in the assessment of whole slide images of tissue sections collected from meningioma patients. The samples were immunohistochemically stained to determine the Ki-67/MIB-1 proliferation index used for prognosis and treatment planning. Objective. The observer performance was examined by comparing results of the proposed method of automatic hot-spot selection in whole slide images, results of traditional scoring under a microscope, and results of a pathologist's manual hot-spot selection. Methods. The results of scoring the Ki-67 index using optical scoring under a microscope, software for Ki-67 index quantification based on hot spots selected by two pathologists (resp., once and three times), and the same software but on hot spots selected by proposed automatic methods were compared using Kendall's tau-b statistics. Results. Results show intra- and interobserver agreement. The agreement between Ki-67 scoring with manual and automatic hot-spot selection is high, while agreement between Ki-67 index scoring results in whole slide images and traditional microscopic examination is lower. Conclusions. The agreement observed for the three scoring methods shows that automation of area selection is an effective tool in supporting physicians and in increasing the reliability of Ki-67 scoring in meningioma. PMID:26240787

  17. Probing binding hot spots at protein-RNA recognition sites.

    PubMed

    Barik, Amita; Nithin, Chandran; Karampudi, Naga Bhushana Rao; Mukherjee, Sunandan; Bahadur, Ranjit Prasad

    2016-01-29

    We use evolutionary conservation derived from structure alignment of polypeptide sequences along with structural and physicochemical attributes of protein-RNA interfaces to probe the binding hot spots at protein-RNA recognition sites. We find that the degree of conservation varies across the RNA binding proteins; some evolve rapidly compared to others. Additionally, irrespective of the structural class of the complexes, residues at the RNA binding sites are evolutionary better conserved than those at the solvent exposed surfaces. For recognitions involving duplex RNA, residues interacting with the major groove are better conserved than those interacting with the minor groove. We identify multi-interface residues participating simultaneously in protein-protein and protein-RNA interfaces in complexes where more than one polypeptide is involved in RNA recognition, and show that they are better conserved compared to any other RNA binding residues. We find that the residues at water preservation site are better conserved than those at hydrated or at dehydrated sites. Finally, we develop a Random Forests model using structural and physicochemical attributes for predicting binding hot spots. The model accurately predicts 80% of the instances of experimental ΔΔG values in a particular class, and provides a stepping-stone towards the engineering of protein-RNA recognition sites with desired affinity. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  18. Simulation of hot spots formation and evolution in HMX

    NASA Astrophysics Data System (ADS)

    Wang, Cheng; Yang, Tonghui

    2017-06-01

    In order to study the formation and evolution of hot spots under shock loading, HMX explosives were selected as the object of study for the two-dimensional finite difference numerical simulation. A fifth order finite difference weighted essentially non-oscillatory (WENO) scheme and a third order TVD Runge-Kutta method are utilized for the spatial discretization and the time advance, respectively. The governing equations are based on the fluid elasto-plastic control equations. The Mie-Gruneisen equation of state and the ideal gas equation of state are selected to use in the state equation of the solid explosives and gas material. In order to simplify the calculation of the model, the reaction can be considered to complete in one step. The calculated area is [ 3.0 ×10-5 m ] × [ 3.0 ×10-5 m ] . The radius is 0.6 ×10-5 m, and the internal gas is not involved in the reaction. The calculation area is divided into 300×300 grids and 10 grids are selected from the bottom of each column to give the particle velocity u as the initial condition. In the selected grid, different initial velocity 100m/s and 200m/s are loaded respectively to study the influence of hot spot formation and evolution in different impact intensity.

  19. A study of the long-term properties of Jovian hot spots from HST and ground-based observations between 1994 and 1998

    NASA Astrophysics Data System (ADS)

    Arregui, E.; Rojas, J. F.; Sanchez-Lavega, A.; Lecacheux, J.; Colas, F.; Miyazaki, I.; Parker, D.

    2000-10-01

    We have used the HST-WFPC2 archived images of Jupiter in the period 1994-1998 together with a large set of CCD ground based images, to study the zonal distribution, long-term motions, lifetimes, interactions and other properties of the hot spot - plume regions at 7 degrees North. Red and near infrared filters covering the wavelength range 650 - 953 nm have been used since they show the hot spots with a high contrast. We have found that the hot spots have velocities ranging from 95 to 112 m/s and are grouped typically in families of three to six members. We do not found any correlation between their velocity and wavenumber. The long-term survey allowed us to identify mergers and splitting of the hot spots areas. The Spanish team was supported by Gobierno Vasco PI 034/97. The French team was supported by the "Programme National de Planetologie."

  20. Hot Spots and Hot Times: Wildlife Road Mortality in a Regional Conservation Corridor.

    PubMed

    Garrah, Evelyn; Danby, Ryan K; Eberhardt, Ewen; Cunnington, Glenn M; Mitchell, Scott

    2015-10-01

    Strategies to reduce wildlife road mortality have become a significant component of many conservation efforts. However, their success depends on knowledge of the temporal and spatial patterns of mortality. We studied these patterns along the 1000 Islands Parkway in Ontario, Canada, a 37 km road that runs adjacent to the St. Lawrence River and bisects the Algonquin-to-Adirondacks international conservation corridor. Characteristics of all vertebrate road kill were recorded during 209 bicycle surveys conducted from 2008 to 2011. We estimate that over 16,700 vertebrates are killed on the road from April to October each year; most are amphibians, but high numbers of birds, mammals, and reptiles were also found, including six reptiles considered at-risk in Canada. Regression tree analysis was used to assess the importance of seasonality, weather, and traffic on road kill magnitude. All taxa except mammals exhibited distinct temporal peaks corresponding to phases in annual life cycles. Variations in weather and traffic were only important outside these peak times. Getis-Ord analysis was used to identify spatial clusters of mortality. Hot spots were found in all years for all taxa, but locations varied annually. A significant spatial association was found between multiyear hot spots and wetlands. The results underscore the notion that multi-species conservation efforts must account for differences in the seasonality of road mortality among species and that multiple years of data are necessary to identify locations where the greatest conservation good can be achieved. This information can be used to inform mitigation strategies with implications for conservation at regional scales.

  1. Hot Spots and Hot Times: Wildlife Road Mortality in a Regional Conservation Corridor

    NASA Astrophysics Data System (ADS)

    Garrah, Evelyn; Danby, Ryan K.; Eberhardt, Ewen; Cunnington, Glenn M.; Mitchell, Scott

    2015-10-01

    Strategies to reduce wildlife road mortality have become a significant component of many conservation efforts. However, their success depends on knowledge of the temporal and spatial patterns of mortality. We studied these patterns along the 1000 Islands Parkway in Ontario, Canada, a 37 km road that runs adjacent to the St. Lawrence River and bisects the Algonquin-to-Adirondacks international conservation corridor. Characteristics of all vertebrate road kill were recorded during 209 bicycle surveys conducted from 2008 to 2011. We estimate that over 16,700 vertebrates are killed on the road from April to October each year; most are amphibians, but high numbers of birds, mammals, and reptiles were also found, including six reptiles considered at-risk in Canada. Regression tree analysis was used to assess the importance of seasonality, weather, and traffic on road kill magnitude. All taxa except mammals exhibited distinct temporal peaks corresponding to phases in annual life cycles. Variations in weather and traffic were only important outside these peak times. Getis-Ord analysis was used to identify spatial clusters of mortality. Hot spots were found in all years for all taxa, but locations varied annually. A significant spatial association was found between multiyear hot spots and wetlands. The results underscore the notion that multi-species conservation efforts must account for differences in the seasonality of road mortality among species and that multiple years of data are necessary to identify locations where the greatest conservation good can be achieved. This information can be used to inform mitigation strategies with implications for conservation at regional scales.

  2. Confining hot spots in 3C 196 - Implications for QSO-companion galaxies

    NASA Technical Reports Server (NTRS)

    Brown, R. L.; Broderick, J. J.; Mitchell, K. J.

    1986-01-01

    VLBI observations of the extremely compact hot spot in the northern radio lobe of the QSO 3C 196 reveal the angular size of its smallest substructure to be 0.065 arcsec x 0.045 arcsec or about 300 pc at the redshift distance. The morphology of the hot spot and its orientation relative to the more diffuse radio emission suggest that it is formed by an oblique interaction between the nuclear QSO jet and circum-QSO cloud. The inferred density in this cloud, together with its apparent size, imply that the cloud contains a galactic mass, greater than a billion solar masses of gas. The effect of the jet will be to hasten gravitational collapse of the cloud. If many QSOs such as 3C 196 are formed or found in gas-rich environments, the QSO radio phase may commonly stimulate the metamorphosis of circum-QSO gas to QSO-companion galaxies or it may play a significant part in catalyzing star formation in existing companions.

  3. Influence of hot spot features on the initiation characteristics of heterogeneous nitromethane

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dattelbaum, Dana M; Sheffield, Stephen A; Stahl, David B

    2010-01-01

    To gain insights into the critical hot spot features influencing energetic materials initiation characteristics, well-defined micron-scale particles have been intentionally introduced into the homogeneous explosive nitromethane (NM). Two types of potential hot spot origins have been examined - shock impedance mismatches using solid silica beads, and porosity using hollow microballoons - as well as their sizes and inter-particle separations. Here, we present the results of several series of gas gun-driven plate impact experiments on NM/particle mixtures with well-controlled shock inputs. Detailed insights into the nature of the reactive flow during the build-up to detonation have been obtained from the responsemore » of in-situ electromagnetic gauges, and the data have been used to establish Pop-plots (run-distance-to-detonation vs. shock input pressure) for the mixtures. Comparisons of sensitization effects and energy release characteristics relative to the initial shock front between the solid and hollow beads are presented.« less

  4. Mitigating road mortality of diamond-backed terrapins (Malaclemy's terrapin) with hybrid barriers at crossing hot spots

    USGS Publications Warehouse

    Crawford, Brian A.; Moore, Clinton; Norton, Terry M.; Maerz, John C.

    2017-01-01

    Roads represent a pervasive feature on most landscapes that can pose multiple threats to wildlife populations and substantial challenges for management. To be effective, management strategies must often target where threats are most concentrated. Road mortality and nest predation are well-documented threats to Diamond-backed Terrapins (Malaclemys terrapin) across the majority of their range, including the 8.7-km causeway to Jekyll Island, Georgia, USA, where both are predicted to contribute to population declines if left unmitigated. From 2009 to 2014, we used intensive road surveying to identify spatial peaks (hot spots) of terrapin crossing activity and road mortality and exploit these as targets for management. In 2011, we deployed a hybrid barrier composed of nest boxes, which were designed to prevent terrapins from accessing the road and mitigate nest predation, at one hot spot while leaving two other hot spots unmanaged. We evaluated the impact of the barrier on terrapin emergences on the causeway under a Before-After-Control-Impact (BACI) design, and a companion study evaluated the effects of nest boxes on nest predation rates. We estimated a 57% reduction in annual terrapin emergences at the barrier site compared to no measurable change at control hot spots. Our findings support the use of hybrid barriers for simultaneously addressing road mortality and nest predation for other terrapin populations at risk to these threats. Our approach highlights the need to design feasible but robust management strategies that target spatial peaks of road mortality while addressing additional threats contributing to population declines of terrapins and other species.

  5. Mapping the Hot Spots: A Zoning Approach to Space Analysis and Design

    ERIC Educational Resources Information Center

    Bunnell, Adam; Carpenter, Russell; Hensley, Emily; Strong, Kelsey; Williams, ReBecca; Winter, Rachel

    2016-01-01

    This article examines a preliminary approach to space design developed and implemented in Eastern Kentucky University's Noel Studio for Academic Creativity. The approach discussed here is entitled "hot spots," which has allowed the research team to observe trends in space usage and composing activities among students. This approach has…

  6. Magnetotransport of multiple-band nearly antiferromagnetic metals due to hot-spot scattering

    DOE PAGES

    Koshelev, A. E.

    2016-09-30

    Multiple-band electronic structure and proximity to antiferromagnetic (AF) instability are the key properties of iron-based superconductors. In this paper, we explore the influence of scattering by the AF spin fluctuations on transport of multiple-band metals above the magnetic transition. A salient feature of scattering on the AF fluctuations is that it is strongly enhanced at the Fermi surface locations where the nesting is perfect (“hot spots” or “hot lines”). We review derivation of the collision integral for the Boltzmann equation due to AF-fluctuations scattering. In the paramagnetic state, the enhanced scattering rate near the hot lines leads to anomalous behaviormore » of electronic transport in magnetic field. We explore this behavior by analytically solving the Boltzmann transport equation with approximate transition rates. This approach accounts for return scattering events and is more accurate than the relaxation-time approximation. The magnetic-field dependences are characterized by two very different field scales: the lower scale is set by the hot-spot width and the higher scale is set by the total scattering amplitude. A conventional magnetotransport behavior is limited to magnetic fields below the lower scale. In the wide range in-between these two scales, the longitudinal conductivity has linear dependence on the magnetic field and the Hall conductivity has quadratic dependence. The linear dependence of the diagonal component reflects growth of the Fermi-surface area affected by the hot spots proportional to the magnetic field. Finally, we discuss applicability of this theoretical framework for describing of anomalous magnetotransport properties in different iron pnictides and chalcogenides in the paramagnetic state.« less

  7. A hot spot for systemic lupus erythematosus, but not for psoriatic arthritis, identified by spatial analysis suggests an interaction between ethnicity and place of residence.

    PubMed

    Al-Maini, Mustafa; Jeyalingam, Thurarshen; Brown, Patrick; Lee, Jennifer J Y; Li, Lennon; Su, Jiandong; Gladman, Dafna D; Fortin, Paul R

    2013-06-01

    To describe the spatial distribution of incident cases of systemic lupus erythematosus (SLE) using geographic information systems (GIS). Spatial analyses were carried out on 890 SLE patients and 541 psoriatic arthritis (PsA) patients (controls). Age- and sex-adjusted rates for SLE/PsA for each census tract were calculated using denominator population values from the Canadian census. Spatial variations in relative risk were estimated by modeling risk as the product of a time effect, an age effect, and a spatially autocorrelated risk surface to identify hot spots. Patients within the detected hot spot were compared to those outside the hot spot to identify explanatory factors. SLE patients were predominantly female (87.75%) and the incidence rate was highest among those 15-19 years of age (2.4 cases/100,000 person-years). In an SLE hot spot containing 59 patients, 100% of the patients were female and 49.1% (n = 29) were Caucasian, while outside of the hot spot, 86.9% (n = 722) of the patients were female and 68.4% (n = 568) were Caucasian. The proportion of cases of Chinese ethnicity was significantly greater within the hot spot. An interaction was found between Chinese ethnicity and residence within the hot spot, with the risk of SLE to the Chinese population found to be twice the risk to the non-Chinese population. GIS was used to map SLE cases and a hot spot was identified after adjustment for age and sex. Ethnicity by itself did not confer an increased risk of SLE, but the interaction of ethnicity with location of residence significantly increased the risk of SLE. Copyright © 2013 by the American College of Rheumatology.

  8. Environmental assessment hot spots of perforated forest in the eastern United States

    Treesearch

    Kurt H. Riitters; John W. Coulston

    2005-01-01

    National assessments of forest fragmentation satisfy international biodiversity conventions, but they do not identify specific places where ecological impacts are likely. In this article, we identify geographic concentrations (hot spots) of forest located near holes in otherwise intact forest canopies (perforated forest) in the eastern United States, and we describe...

  9. Fusion yield rate recovery by escaping hot-spot fast ions in the neighboring fuel layer

    NASA Astrophysics Data System (ADS)

    Tang, Xian-Zhu; McDevitt, C. J.; Guo, Zehua; Berk, H. L.

    2014-02-01

    Free-streaming loss by fast ions can deplete the tail population in the hot spot of an inertial confinement fusion (ICF) target. Escaping fast ions in the neighboring fuel layer of a cryogenic target can produce a surplus of fast ions locally. In contrast to the Knudsen layer effect that reduces hot-spot fusion reactivity due to tail ion depletion, the inverse Knudsen layer effect increases fusion reactivity in the neighboring fuel layer. In the case of a burning ICF target in the presence of significant hydrodynamic mix which aggravates the Knudsen layer effect, the yield recovery largely compensates for the yield reduction. For mix-dominated sub-ignition targets, the yield reduction is the dominant process.

  10. Searching for biogeochemical hot spots in three dimensions: soil C and N cycling in hydropedologic settings in a northern hardwood forest

    Treesearch

    J.L. Morse; S.F. Werner; C.P. Gillin; C.L. Goodale; S.W. Bailey; K.J. McGuire; P.M. Groffman

    2014-01-01

    Understanding and predicting the extent, location, and function of biogeochemical hot spots at the watershed scale is a frontier in environmental science. We applied a hydropedologic approach to identify (1) biogeochemical differences among morphologically distinct hydropedologic settings and (2) hot spots of microbial carbon (C) and nitrogen (N) cycling activity in a...

  11. Identifying geographic hot spots of reassortment in a multipartite plant virus

    PubMed Central

    Savory, Fiona R; Varma, Varun; Ramakrishnan, Uma

    2014-01-01

    Reassortment between different species or strains plays a key role in the evolution of multipartite plant viruses and can have important epidemiological implications. Identifying geographic locations where reassortant lineages are most likely to emerge could be a valuable strategy for informing disease management and surveillance efforts. We developed a predictive framework to identify potential geographic hot spots of reassortment based upon spatially explicit analyses of genome constellation diversity. To demonstrate the utility of this approach, we examined spatial variation in the potential for reassortment among Cardamom bushy dwarf virus (CBDV; Nanoviridae, Babuvirus) isolates in Northeast India. Using sequence data corresponding to six discrete genome components for 163 CBDV isolates, a quantitative measure of genome constellation diversity was obtained for locations across the sampling region. Two key areas were identified where viruses with highly distinct genome constellations cocirculate, and these locations were designated as possible geographic hot spots of reassortment, where novel reassortant lineages could emerge. Our study demonstrates that the potential for reassortment can be spatially dependent in multipartite plant viruses and highlights the use of evolutionary analyses to identify locations which could be actively managed to facilitate the prevention of outbreaks involving novel reassortant strains. PMID:24944570

  12. Controlled formation of intense hot spots in Pd@Ag core-shell nanooctapods for efficient photothermal conversion

    NASA Astrophysics Data System (ADS)

    Liu, Maochang; Yang, Yang; Li, Naixu; Du, Yuanchang; Song, Dongxing; Ma, Lijing; Wang, Yi; Zheng, Yiqun; Jing, Dengwei

    2017-08-01

    Plasmonic Ag nanostructures have been of great interest for such applications in cancer therapy and catalysis, etc. However, the relatively week Ag-Ag interaction and spontaneous atom diffusion make it very difficult to generate concaved or branched structures in Ag nanocrystals with sizes less than 100 nm, which has been considered very favorable for plasmonic effects. Herein, by employing a cubic Pd seed and a specific reducing agent to restrict the surface diffusion of Ag atoms, Pd@Ag core-shell nanooctapod structures where Ag atoms can be selectively deposited onto the corner sites of the Pd cubes were obtained. Such selective decoration enables us to precisely control the locations for the hot spot formation during light irradiation. We find that the branched nanooctapod structure shows strong absorption in the visible-light region and generates intense hot spots around the octapod arms of Ag. As such, the photothermal conversion efficiency could be significantly improved by more than 50% with a colloid solution containing only ppm-level nanooctapods compared with pure water. The reported nanostructure is expected to find extensive applications due to its controlled formation of light-induced hot spots at certain points on the crystal surface.

  13. Infrared polar brightenings on Jupiter. V - A thermal equilibrium model for the north polar hot spot

    NASA Technical Reports Server (NTRS)

    Halthore, Rangasayi; Burrows, Adam; Caldwell, John

    1988-01-01

    Voyager IRIS instrument records of the IR hydrocarbon emissions from Jupiter's north polar region are presently studied to determine the spatial and other characteristics of the north polar hot spot. Attention is given to a thermal equilibrium model that exploits the asymmetry found in 7.8-micron emission of stratospheric methane with respect to system III longitude in order to estimate stratospheric zonal wind velocity. This model accurately predicts the observed asymmetry in acetylene's 13.6-micron emission; this requires, however, enhanced acetylene abundance in the hot spot, as well as ethane depletion. Energetic charged particles are suggested to be the most probable cause of these effects.

  14. Hot-Spot Fatigue and Impact Damage Detection on a Helicopter Tailboom

    DTIC Science & Technology

    2011-09-01

    other 14 PZT disks were used as sensors. Among the 28 PZT disks, 16 PZT disks were placed in the two fatigue hot-spot areas to detect cracks initiated...more efficient and effective airframe maintenance, fatigue cracking and impact damage detection technologies were developed and demonstrated on a...SHM system in successfully monitoring fatigue cracks initiated from cyclical loading conditions; detecting, locating and quantifying ballistic

  15. A Healthcare Utilization Analysis Framework for Hot Spotting and Contextual Anomaly Detection

    PubMed Central

    Hu, Jianying; Wang, Fei; Sun, Jimeng; Sorrentino, Robert; Ebadollahi, Shahram

    2012-01-01

    Patient medical records today contain vast amount of information regarding patient conditions along with treatment and procedure records. Systematic healthcare resource utilization analysis leveraging such observational data can provide critical insights to guide resource planning and improve the quality of care delivery while reducing cost. Of particular interest to providers are hot spotting: the ability to identify in a timely manner heavy users of the systems and their patterns of utilization so that targeted intervention programs can be instituted, and anomaly detection: the ability to identify anomalous utilization cases where the patients incurred levels of utilization that are unexpected given their clinical characteristics which may require corrective actions. Past work on medical utilization pattern analysis has focused on disease specific studies. We present a framework for utilization analysis that can be easily applied to any patient population. The framework includes two main components: utilization profiling and hot spotting, where we use a vector space model to represent patient utilization profiles, and apply clustering techniques to identify utilization groups within a given population and isolate high utilizers of different types; and contextual anomaly detection for utilization, where models that map patient’s clinical characteristics to the utilization level are built in order to quantify the deviation between the expected and actual utilization levels and identify anomalies. We demonstrate the effectiveness of the framework using claims data collected from a population of 7667 diabetes patients. Our analysis demonstrates the usefulness of the proposed approaches in identifying clinically meaningful instances for both hot spotting and anomaly detection. In future work we plan to incorporate additional sources of observational data including EMRs and disease registries, and develop analytics models to leverage temporal relationships among

  16. A healthcare utilization analysis framework for hot spotting and contextual anomaly detection.

    PubMed

    Hu, Jianying; Wang, Fei; Sun, Jimeng; Sorrentino, Robert; Ebadollahi, Shahram

    2012-01-01

    Patient medical records today contain vast amount of information regarding patient conditions along with treatment and procedure records. Systematic healthcare resource utilization analysis leveraging such observational data can provide critical insights to guide resource planning and improve the quality of care delivery while reducing cost. Of particular interest to providers are hot spotting: the ability to identify in a timely manner heavy users of the systems and their patterns of utilization so that targeted intervention programs can be instituted, and anomaly detection: the ability to identify anomalous utilization cases where the patients incurred levels of utilization that are unexpected given their clinical characteristics which may require corrective actions. Past work on medical utilization pattern analysis has focused on disease specific studies. We present a framework for utilization analysis that can be easily applied to any patient population. The framework includes two main components: utilization profiling and hot spotting, where we use a vector space model to represent patient utilization profiles, and apply clustering techniques to identify utilization groups within a given population and isolate high utilizers of different types; and contextual anomaly detection for utilization, where models that map patient's clinical characteristics to the utilization level are built in order to quantify the deviation between the expected and actual utilization levels and identify anomalies. We demonstrate the effectiveness of the framework using claims data collected from a population of 7667 diabetes patients. Our analysis demonstrates the usefulness of the proposed approaches in identifying clinically meaningful instances for both hot spotting and anomaly detection. In future work we plan to incorporate additional sources of observational data including EMRs and disease registries, and develop analytics models to leverage temporal relationships among

  17. Non-local Lateral electron heat transport from one or more hot spots.

    NASA Astrophysics Data System (ADS)

    Matte, Jean-Pierre; Alouani-Bibi, Fathallah

    2000-10-01

    Fokker-Planck simulations of collisional absorption and transport in long scale length, preformed, underdense plasmas heated by intense and narrow laser hot spots, as in certain recent LANL experiments [1], are presented. The temperature profiles compared with those obtained from flux limited or delocalized heat flow models. For the former, the temperature peaks can be matched only if a very low flux limiter is used, and even then, the scale length of the temperature profile is always overestimated. The electron distribution function will be characterized, and compared to the "DLM" shape, exp(-(v/u)^m), [2] and the best fit for m will be compared to older formulas for uniform plasmas [2]. Hydrodynamic effects are also addressed with simulations which include ion motion; both with and without the ponderomotive force. The enhancement of sound velocity due to the "DLM" shape [3] inside the hot spot will be quantified. [1] J.A. Cobble et al., Phys. Plasmas, 7, 323 (2000) [2] J.P. Matte et al., Plasma Phys. and Contr. Fusion, 30, 1665, (1988) [3] B. B. Afeyan et al., PRL 81, 2322 (1998).

  18. Anisotropic Signature of the Afar plume in the Upper Mantle.

    NASA Astrophysics Data System (ADS)

    Sicilia, D.; Montagner, J.; Debayle, E.; Leveque, J.; Cara, M.; Lepine, J.

    2002-12-01

    Plumes remain enigmatic geological objects and it is still unclear how they are formed and whether they act independently from plate tectonics. The role of plumes in mantle dynamics can be investigated by studying their interaction with lithosphere and crust and their perturbations on flow pattern in the mantle. The flow pattern can be derived from seismic anisotropy. An anisotropic surface wave tomography in the Horn of Africa was performed. The choice of the experiment in the Horn of Africa is motivated by the the presence of the Afar hotspot, one of the biggest continental hotspot. In the framework of the mantle degree 2 pattern, the Afar hotspot is the antipode of the Pacific superswell, but its origin at depth and its geodynamic importance are still debated. Data were collected from the permanent IRIS and GEOSCOPE networks and from the PASSCAL experiment in Tanzania and Saudi Arabia. We completed our data base with a French deployment of portable broadband stations surrounding the Afar Hotspot. Path average phase velocities are obtained by using a method based on a least-squares minimization (Beucler et al.,2002). A correction of the data is applied according to the a priori 3SMAC model (Nataf and Ricard, 1996). 3D-models of velocity, radial and azimuthal anisotropies are inverted for. Down to 250km, low velocities are found beneath the Red Sea, the Gulf of Aden, the South East of the Tanzania Craton, the Afar hotspot. High velocities are present in the eastern Arabia and the Tanzania Craton. These results are in agreement with the isotropic model of Debayle et al. (2002). The anisotropy model beneath Afar displays a complex pattern. The azimuthal anisotropy shows that the Afar plume might be interpreted as feeding other hotspots in central Africa. Deeper in the asthenosphere, a wide stem of positive radial anisotropy (VSH > VSV) comes up, where we might expect the reverse sign. The same observation was made below Iceland (Gaherty, 2001) and Hawaii (Montagner

  19. Hot spot analysis applied to identify ecosystem services potential in Lithuania

    NASA Astrophysics Data System (ADS)

    Pereira, Paulo; Depellegrin, Daniel; Misiune, Ieva

    2016-04-01

    Hot spot analysis are very useful to identify areas with similar characteristics. This is important for a sustainable use of the territory, since we can identify areas that need to be protected, or restored. This is a great advantage in terms of land use planning and management, since we can allocate resources, reduce the economical costs and do a better intervention in the landscape. Ecosystem services (ES) are different according land use. Since landscape is very heterogeneous, it is of major importance understand their spatial pattern and where are located the areas that provide better ES and the others that provide less services. The objective of this work is to use hot-spot analysis to identify areas with the most valuable ES in Lithuania. CORINE land-cover (CLC) of 2006 was used as the main spatial information. This classification uses a grid of 100 m resolution and extracted a total of 31 land use types. ES ranking was carried out based on expert knowledge. They were asked to evaluate the ES potential of each different CLC from 0 (no potential) to 5 (very high potential). Hot spot analysis were evaluated using the Getis-ord test, which identifies cluster analysis available in ArcGIS toolbox. This tool identifies areas with significantly high low values and significant high values at a p level of 0.05. In this work we used hot spot analysis to assess the distribution of providing, regulating cultural and total (sum of the previous 3) ES. The Z value calculated from Getis-ord was used to statistical analysis to access the clusters of providing, regulating cultural and total ES. ES with high Z value show that they have a high number of cluster areas with high potential of ES. The results showed that the Z-score was significantly different among services (Kruskal Wallis ANOVA =834. 607, p<0.001). The Z score of providing services (0.096±2.239) were significantly higher than the total (0.093±2.045), cultural (0.080±1.979) and regulating (0.076±1.961). These

  20. From science into practice: modelling hot spots for corporate flood risk and emergency management with high-resolution digital terrain data

    NASA Astrophysics Data System (ADS)

    Pfurtscheller, Clemens; Vetter, Michael; Werthmann, Markus

    2010-05-01

    In times of increasing scarcity of private or public resources and uncertain changes in natural environment caused by climate variations, prevention and risk management against floods and coherent processes in mountainous regions, like debris flows or log jams, should be faced as a main challenge for globalised enterprises whose production facilities are located in flood-prone areas. From an entrepreneurial perspective, vulnerability of production facilities which causes restrictions or a total termination of production processes has to be optimised by means of cost-benefit-principles. Modern production enterprises are subject to globalisation and accompanying aspects, like short order and delivery periods, interlinking production processes and just-in-time manufacturing, so a breakdown of production provokes substantial financial impacts, unemployment and a decline of gross regional product. The aim of the presented project is to identify weak and critical points of the corporate emergency planning ("hot spots") and to assess possible losses triggered by mountainous flood processes using high-resolution digital terrain models (DTM) from airborne LiDAR (ALS). We derive flood-hot spots and model critical locations where the risk of natural hazards is very high. To model those hot spots a flood simulation based on an ALS-DTM has to be calculated. Based on that flood simulation, the flood heights of the overflowed locations which are lower than a threshold are mapped as flood-hot-spots. Then the corporate critical infrastructure, e.g. production facilities or lifelines, which are affected by the flooding, can be figured out. After the identification of hot spots and possible damage potential, the implementation of the results into corporate risk and emergency management guarantees the transdisciplinary approach involving stakeholders, risk and safety management officers and corporate fire brigade. Thus, the interdisciplinary analysis, including remote sensing

  1. Plasma behaviour in the neighbourhood of the hot-spot during an active experiment

    NASA Astrophysics Data System (ADS)

    Sallago, Patricia

    In order to study the physical quantities that characterize a plasma, several active experiments have been done by many researcher groups around the world. These experimental papers, describing their measurements and the observed phenomena under a variety of geomagnetical conditions, bring some clues about the plasma behaviour in the neighbourhood of the hot-spot during and soon after the turn-off of ionospheric heating devices. A review of these works was faced in the frame of the application of IAR (Argentinian Radioas-tronomy Institute), La Plata, Argentine, as a site of installation for the AMISR (Advanced Modular Incoherent Scatter Radar), in a contest of research projets called by NSF (National Scientific Foundation). The present contribution gives a possible theoretical explanation, based on the generation and propagation of Alfven waves, of the plasma behaviour in the neighbourhood of the hot-spot during an active experiment and, as a consequence, for some experimental results.

  2. Integrating sustainable hunting in biodiversity protection in Central Africa: hot spots, weak spots, and strong spots.

    PubMed

    Fa, John E; Olivero, Jesús; Farfán, Miguel Ángel; Márquez, Ana Luz; Vargas, Juan Mario; Real, Raimundo; Nasi, Robert

    2014-01-01

    Wild animals are a primary source of protein (bushmeat) for people living in or near tropical forests. Ideally, the effect of bushmeat harvests should be monitored closely by making regular estimates of offtake rate and size of stock available for exploitation. However, in practice, this is possible in very few situations because it requires both of these aspects to be readily measurable, and even in the best case, entails very considerable time and effort. As alternative, in this study, we use high-resolution, environmental favorability models for terrestrial mammals (N = 165) in Central Africa to map areas of high species richness (hot spots) and hunting susceptibility. Favorability models distinguish localities with environmental conditions that favor the species' existence from those with detrimental characteristics for its presence. We develop an index for assessing Potential Hunting Sustainability (PHS) of each species based on their ecological characteristics (population density, habitat breadth, rarity and vulnerability), weighted according to restrictive and permissive assumptions of how species' characteristics are combined. Species are classified into five main hunting sustainability classes using fuzzy logic. Using the accumulated favorability values of all species, and their PHS values, we finally identify weak spots, defined as high diversity regions of especial hunting vulnerability for wildlife, as well as strong spots, defined as high diversity areas of high hunting sustainability potential. Our study uses relatively simple models that employ easily obtainable data of a species' ecological characteristics to assess the impacts of hunting in tropical regions. It provides information for management by charting the geography of where species are more or less likely to be at risk of extinction from hunting.

  3. Integrating Sustainable Hunting in Biodiversity Protection in Central Africa: Hot Spots, Weak Spots, and Strong Spots

    PubMed Central

    Fa, John E.; Olivero, Jesús; Farfán, Miguel Ángel; Márquez, Ana Luz; Vargas, Juan Mario; Real, Raimundo; Nasi, Robert

    2014-01-01

    Wild animals are a primary source of protein (bushmeat) for people living in or near tropical forests. Ideally, the effect of bushmeat harvests should be monitored closely by making regular estimates of offtake rate and size of stock available for exploitation. However, in practice, this is possible in very few situations because it requires both of these aspects to be readily measurable, and even in the best case, entails very considerable time and effort. As alternative, in this study, we use high-resolution, environmental favorability models for terrestrial mammals (N = 165) in Central Africa to map areas of high species richness (hot spots) and hunting susceptibility. Favorability models distinguish localities with environmental conditions that favor the species' existence from those with detrimental characteristics for its presence. We develop an index for assessing Potential Hunting Sustainability (PHS) of each species based on their ecological characteristics (population density, habitat breadth, rarity and vulnerability), weighted according to restrictive and permissive assumptions of how species' characteristics are combined. Species are classified into five main hunting sustainability classes using fuzzy logic. Using the accumulated favorability values of all species, and their PHS values, we finally identify weak spots, defined as high diversity regions of especial hunting vulnerability for wildlife, as well as strong spots, defined as high diversity areas of high hunting sustainability potential. Our study uses relatively simple models that employ easily obtainable data of a species' ecological characteristics to assess the impacts of hunting in tropical regions. It provides information for management by charting the geography of where species are more or less likely to be at risk of extinction from hunting. PMID:25372705

  4. Ionospheric hot spot at high latitudes

    NASA Technical Reports Server (NTRS)

    Schunk, R. W.; Sojka, J. J.

    1982-01-01

    Schunk and Raitt (1980) and Sojka et al. (1981) have developed a model of the convecting high-latitude ionosphere in order to determine the extent to which various chemical and transport processes affect the ion composition and electron density at F-region altitudes. The numerical model produces time-dependent, three-dimensional ion density distributions for the ions NO(+), O2(+), N2(+), O(+), N(+), and He(+). Recently, the high-latitude ionospheric model has been improved by including thermal conduction and diffusion-thermal heat flow terms. Schunk and Sojka (1982) have studied the ion temperature variations in the daytime high-latitude F-region. In the present study, a time-dependent three-dimensional ion temperature distribution is obtained for the high-latitude ionosphere for an asymmetric convection electric field pattern with enhanced flow in the dusk sector of the polar region. It is shown that such a convection pattern produces a hot spot in the ion temperature distribution which coincides with the location of the strong convection cell.

  5. Stochastic Particle Acceleration in the Hot Spots of FRII Radio Galaxies

    NASA Astrophysics Data System (ADS)

    Liu, Siming; Fan, Z.; Wang, J.; Fryer, C. L.; Li, H.

    2007-12-01

    Chandra, XMM-Newton, and HST observations of FRII radio galaxies, in combination with traditional radio studies, have advanced our understanding of the nature of jets, hot spots, and lobes significantly. The observed radio to optical emission has been attributed to the synchrotron processes. The X-ray emission can be produced through synchrotron, synchrotron self-Comptonization, and inverse Comptonization of the CMB or other background photos. Phenomenologically modelings of the observed broadband spectra have led to good constraints on the magnetic field and electron distribution. However, the matter and energy contents of the relativistic outflows driven by the central black holes, which power these sources, are still not well-constrained, and we also lack an understanding of the physical processes that determine the energy partition between the electrons and the magnetic field, the low energy cutoff of the electron spectrum, and the electron acceleration rate in these strongly magnetized relativistic plasmas. In the context of stochastic particle acceleration, we propose a model for the hot spots of radio galaxies and show how it may help us to address the above issues. This work was funded in part under the auspices of the US Department of Energy, and supported by its contract W-7405-ENG-36 to Los Alamos National Laboratory.

  6. A conserved TLR5 binding and activation hot spot on flagellin.

    PubMed

    Song, Wan Seok; Jeon, Ye Ji; Namgung, Byeol; Hong, Minsun; Yoon, Sung-Il

    2017-01-20

    Flagellin is a bacterial protein that polymerizes into the flagellar filament and is essential for bacterial motility. When flagellated bacteria invade the host, flagellin is recognized by Toll-like receptor 5 (TLR5) as a pathogen invasion signal and eventually evokes the innate immune response. Here, we provide a conserved structural mechanism by which flagellins from Gram-negative γ-proteobacteria and Gram-positive Firmicutes bacteria bind and activate TLR5. The comparative structural analysis using our crystal structure of a complex between Bacillus subtilis flagellin (bsflagellin) and TLR5 at 2.1 Å resolution, combined with the alanine scanning analysis of the binding interface, reveals a common hot spot in flagellin for TLR5 activation. An arginine residue (bsflagellin R89) of the flagellin D1 domain and its adjacent residues (bsflagellin E114 and L93) constitute a hot spot that provides shape and chemical complementarity to a cavity generated by the loop of leucine-rich repeat 9 in TLR5. In addition to the flagellin D1 domain, the D0 domain also contributes to TLR5 activity through structurally dispersed regions, but not a single focal area. These results establish the groundwork for the future design of flagellin-based therapeutics.

  7. Demonstration of Fuel Hot-Spot Pressure in Excess of 50 Gbar for Direct-Drive, Layered Deuterium-Tritium Implosions on OMEGA

    NASA Astrophysics Data System (ADS)

    Regan, S. P.; Goncharov, V. N.; Igumenshchev, I. V.; Sangster, T. C.; Betti, R.; Bose, A.; Boehly, T. R.; Bonino, M. J.; Campbell, E. M.; Cao, D.; Collins, T. J. B.; Craxton, R. S.; Davis, A. K.; Delettrez, J. A.; Edgell, D. H.; Epstein, R.; Forrest, C. J.; Frenje, J. A.; Froula, D. H.; Gatu Johnson, M.; Glebov, V. Yu.; Harding, D. R.; Hohenberger, M.; Hu, S. X.; Jacobs-Perkins, D.; Janezic, R.; Karasik, M.; Keck, R. L.; Kelly, J. H.; Kessler, T. J.; Knauer, J. P.; Kosc, T. Z.; Loucks, S. J.; Marozas, J. A.; Marshall, F. J.; McCrory, R. L.; McKenty, P. W.; Meyerhofer, D. D.; Michel, D. T.; Myatt, J. F.; Obenschain, S. P.; Petrasso, R. D.; Radha, P. B.; Rice, B.; Rosenberg, M. J.; Schmitt, A. J.; Schmitt, M. J.; Seka, W.; Shmayda, W. T.; Shoup, M. J.; Shvydky, A.; Skupsky, S.; Solodov, A. A.; Stoeckl, C.; Theobald, W.; Ulreich, J.; Wittman, M. D.; Woo, K. M.; Yaakobi, B.; Zuegel, J. D.

    2016-07-01

    A record fuel hot-spot pressure Phs=56 ±7 Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium-tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility, these implosions achieved a Lawson parameter ˜60 % of the value required for ignition [A. Bose et al., Phys. Rev. E 93, LM15119ER (2016)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure is approximately 40% lower. Three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.

  8. Geochemical evidence of mantle reservoir evolution during progressive rifting along the western Afar margin

    NASA Astrophysics Data System (ADS)

    Rooney, Tyrone O.; Mohr, Paul; Dosso, Laure; Hall, Chris

    2013-02-01

    The Afar triple junction, where the Red Sea, Gulf of Aden and African Rift System extension zones converge, is a pivotal domain for the study of continental-to-oceanic rift evolution. The western margin of Afar forms the southernmost sector of the western margin of the Red Sea rift where that margin enters the Ethiopian flood basalt province. Tectonism and volcanism at the triple junction had commenced by ˜31 Ma with crustal fissuring, diking and voluminous eruption of the Ethiopian-Yemen flood basalt pile. The dikes which fed the Oligocene-Quaternary lava sequence covering the western Afar rift margin provide an opportunity to probe the geochemical reservoirs associated with the evolution of a still active continental margin. 40Ar/39Ar geochronology reveals that the western Afar margin dikes span the entire history of rift evolution from the initial Oligocene flood basalt event to the development of focused zones of intrusion in rift marginal basins. Major element, trace element and isotopic (Sr-Nd-Pb-Hf) data demonstrate temporal geochemical heterogeneities resulting from variable contributions from the Afar plume, depleted asthenospheric mantle, and African lithosphere. The various dikes erupted between 31 Ma and 22 Ma all share isotopic signatures attesting to a contribution from the Afar plume, indicating this initial period in the evolution of the Afar margin was one of magma-assisted weakening of the lithosphere. From 22 Ma to 12 Ma, however, diffuse diking during continued evolution of the rift margin facilitated ascent of magmas in which depleted mantle and lithospheric sources predominated, though contributions from the Afar plume persisted. After 10 Ma, magmatic intrusion migrated eastwards towards the Afar rift floor, with an increasing fraction of the magmas derived from depleted mantle with less of a lithospheric signature. The dikes of the western Afar margin reveal that magma generation processes during the evolution of this continental rift margin

  9. Evolution and Persistence of 5-um Hot Spots at the Galileo Probe entry Latitude

    NASA Technical Reports Server (NTRS)

    Fisher, B. M.

    1997-01-01

    We present a study on the longtudinal locations, morphology and evolution of the 5-um hot spots at 6.5 deg. N latitude (planetocentric), from an extensive IRTF-NSFCAM data set spanning more that 3 years, which includes the date of the Galileo Probe entry.

  10. Focal hot spot induced by a central subclavian line on bone scan.

    PubMed

    Moslehi, Masood; Cheki, Mohsen; Dehghani, Tohid; Eftekhari, Mansoureh

    2014-01-01

    The diagnostic accuracy of nuclear medicine reporting can be improved by awareness of these instrument-related artifacts. Both awareness and experience are also important when it comes to detecting and identifying normal (and abnormal) variants. We present a case of hot spot on the upper right chest in the region of right subclavicular region resulting from injection of radiotracer from central subclavian line. A 52-year-old woman with a history of left breast cancer and recent bone pain was referred to our nuclear medicine department for skeletal survey. Anterior views of chest show a focus of increased radiotracer uptake corresponding to anterior arch of one of the right second rib. The nuclear physician reported it as a focal rib bony lesion and recommended radiological evaluation. As technician later explained, physicians realized that injection site was a central subclavian line on the right side and hot spot on that region is due to injection site. The appearance of both skeletal and soft-tissue uptake depends heavily on imaging technique (such as the route of radiotracer administration) and the interpreting physicians should be aware of the impact of technical factors on image quality.

  11. Demonstration of fuel hot-spot pressure in excess of 50 Gbar for direct-drive, layered deuterium-tritium implosions on OMEGA

    DOE PAGES

    Regan, S. P.; Goncharov, V. N.; Igumenshchev, I. V.; ...

    2016-07-07

    A record fuel hot-spot pressure P hs = 56±7 Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium–tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility (NIF), these implosions achieved a Lawson parameter ~60% of the value required for ignition [A. Bose et al., Phys. Rev. E (in press)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure ismore » ~40% lower. Furthermore, three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.« less

  12. Demonstration of fuel hot-spot pressure in excess of 50 Gbar for direct-drive, layered deuterium-tritium implosions on OMEGA

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Regan, S. P.; Goncharov, V. N.; Igumenshchev, I. V.

    A record fuel hot-spot pressure P hs = 56±7 Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium–tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility (NIF), these implosions achieved a Lawson parameter ~60% of the value required for ignition [A. Bose et al., Phys. Rev. E (in press)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure ismore » ~40% lower. Furthermore, three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.« less

  13. Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots

    PubMed Central

    2014-01-01

    Background Binding free energy and binding hot spots at protein-protein interfaces are two important research areas for understanding protein interactions. Computational methods have been developed previously for accurate prediction of binding free energy change upon mutation for interfacial residues. However, a large number of interrupted and unimportant atomic contacts are used in the training phase which caused accuracy loss. Results This work proposes a new method, βACV ASA , to predict the change of binding free energy after alanine mutations. βACV ASA integrates accessible surface area (ASA) and our newly defined β contacts together into an atomic contact vector (ACV). A β contact between two atoms is a direct contact without being interrupted by any other atom between them. A β contact’s potential contribution to protein binding is also supposed to be inversely proportional to its ASA to follow the water exclusion hypothesis of binding hot spots. Tested on a dataset of 396 alanine mutations, our method is found to be superior in classification performance to many other methods, including Robetta, FoldX, HotPOINT, an ACV method of β contacts without ASA integration, and ACV ASA methods (similar to βACV ASA but based on distance-cutoff contacts). Based on our data analysis and results, we can draw conclusions that: (i) our method is powerful in the prediction of binding free energy change after alanine mutation; (ii) β contacts are better than distance-cutoff contacts for modeling the well-organized protein-binding interfaces; (iii) β contacts usually are only a small fraction number of the distance-based contacts; and (iv) water exclusion is a necessary condition for a residue to become a binding hot spot. Conclusions βACV ASA is designed using the advantages of both β contacts and water exclusion. It is an excellent tool to predict binding free energy changes and binding hot spots after alanine mutation. PMID:24568581

  14. Conduction-driven cooling of LED-based automotive LED lighting systems for abating local hot spots

    NASA Astrophysics Data System (ADS)

    Saati, Ferina; Arik, Mehmet

    2018-02-01

    Light-emitting diode (LED)-based automotive lighting systems pose unique challenges, such as dual-side packaging (front side for LEDs and back side for driver electronics circuit), size, harsh ambient, and cooling. Packaging for automotive lighting applications combining the advanced printed circuit board (PCB) technology with a multifunctional LED-based board is investigated with a focus on the effect of thermal conduction-based cooling for hot spot abatement. A baseline study with a flame retardant 4 technology, commonly known as FR4 PCB, is first compared with a metal-core PCB technology, both experimentally and computationally. The double-sided advanced PCB that houses both electronics and LEDs is then investigated computationally and experimentally compared with the baseline FR4 PCB. Computational models are first developed with a commercial computational fluid dynamics software and are followed by an advanced PCB technology based on embedded heat pipes, which is computationally and experimentally studied. Then, attention is turned to studying different heat pipe orientations and heat pipe placements on the board. Results show that conventional FR4-based light engines experience local hot spots (ΔT>50°C) while advanced PCB technology based on heat pipes and thermal spreaders eliminates these local hot spots (ΔT<10°C), leading to a higher lumen extraction with improved reliability. Finally, possible design options are presented with embedded heat pipe structures that further improve the PCB performance.

  15. The Root Transition Zone: A Hot Spot for Signal Crosstalk.

    PubMed

    Kong, Xiangpei; Liu, Guangchao; Liu, Jiajia; Ding, Zhaojun

    2018-05-01

    The root transition zone (TZ), located between the apical meristem and basal elongation region, has a unique role in root growth and development. The root TZ is not only the active site for hormone crosstalk, but also the perception site for various environmental cues, such as aluminum (Al) stress and low phosphate (Pi) stress. We propose that the root TZ is a hot spot for the integration of diverse inputs from endogenous (hormonal) and exogenous (sensorial) stimuli to control root growth. Copyright © 2018 Elsevier Ltd. All rights reserved.

  16. Hot spot dynamics in carbon nanotube array devices.

    PubMed

    Engel, Michael; Steiner, Mathias; Seo, Jung-Woo T; Hersam, Mark C; Avouris, Phaedon

    2015-03-11

    We report on the dynamics of spatial temperature distributions in aligned semiconducting carbon nanotube array devices with submicrometer channel lengths. By using high-resolution optical microscopy in combination with electrical transport measurements, we observe under steady state bias conditions the emergence of time-variable, local temperature maxima with dimensions below 300 nm, and temperatures above 400 K. On the basis of time domain cross-correlation analysis, we investigate how the intensity fluctuations of the thermal radiation patterns are correlated with the overall device current. The analysis reveals the interdependence of electrical current fluctuations and time-variable hot spot formation that limits the overall device performance and, ultimately, may cause device degradation. The findings have implications for the future development of carbon nanotube-based technologies.

  17. HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information.

    PubMed

    Sumbalova, Lenka; Stourac, Jan; Martinek, Tomas; Bednar, David; Damborsky, Jiri

    2018-05-23

    HotSpot Wizard is a web server used for the automated identification of hotspots in semi-rational protein design to give improved protein stability, catalytic activity, substrate specificity and enantioselectivity. Since there are three orders of magnitude fewer protein structures than sequences in bioinformatic databases, the major limitation to the usability of previous versions was the requirement for the protein structure to be a compulsory input for the calculation. HotSpot Wizard 3.0 now accepts the protein sequence as input data. The protein structure for the query sequence is obtained either from eight repositories of homology models or is modeled using Modeller and I-Tasser. The quality of the models is then evaluated using three quality assessment tools-WHAT_CHECK, PROCHECK and MolProbity. During follow-up analyses, the system automatically warns the users whenever they attempt to redesign poorly predicted parts of their homology models. The second main limitation of HotSpot Wizard's predictions is that it identifies suitable positions for mutagenesis, but does not provide any reliable advice on particular substitutions. A new module for the estimation of thermodynamic stabilities using the Rosetta and FoldX suites has been introduced which prevents destabilizing mutations among pre-selected variants entering experimental testing. HotSpot Wizard is freely available at http://loschmidt.chemi.muni.cz/hotspotwizard.

  18. DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis.

    PubMed

    Yelina, Nataliya E; Lambing, Christophe; Hardcastle, Thomas J; Zhao, Xiaohui; Santos, Bruno; Henderson, Ian R

    2015-10-15

    During meiosis, homologous chromosomes undergo crossover recombination, which is typically concentrated in narrow hot spots that are controlled by genetic and epigenetic information. Arabidopsis chromosomes are highly DNA methylated in the repetitive centromeres, which are also crossover-suppressed. Here we demonstrate that RNA-directed DNA methylation is sufficient to locally silence Arabidopsis euchromatic crossover hot spots and is associated with increased nucleosome density and H3K9me2. However, loss of CG DNA methylation maintenance in met1 triggers epigenetic crossover remodeling at the chromosome scale, with pericentromeric decreases and euchromatic increases in recombination. We used recombination mutants that alter interfering and noninterfering crossover repair pathways (fancm and zip4) to demonstrate that remodeling primarily involves redistribution of interfering crossovers. Using whole-genome bisulfite sequencing, we show that crossover remodeling is driven by loss of CG methylation within the centromeric regions. Using cytogenetics, we profiled meiotic DNA double-strand break (DSB) foci in met1 and found them unchanged relative to wild type. We propose that met1 chromosome structure is altered, causing centromere-proximal DSBs to be inhibited from maturation into interfering crossovers. These data demonstrate that DNA methylation is sufficient to silence crossover hot spots and plays a key role in establishing domains of meiotic recombination along chromosomes. © 2015 Yelina et al.; Published by Cold Spring Harbor Laboratory Press.

  19. Hot-spot analysis to dissect the functional protein-protein interface of a tRNA-modifying enzyme.

    PubMed

    Jakobi, Stephan; Nguyen, Tran Xuan Phong; Debaene, François; Metz, Alexander; Sanglier-Cianférani, Sarah; Reuter, Klaus; Klebe, Gerhard

    2014-10-01

    Interference with protein-protein interactions of interfaces larger than 1500 Ų by small drug-like molecules is notoriously difficult, particularly if targeting homodimers. The tRNA modifying enzyme Tgt is only functionally active as a homodimer. Thus, blocking Tgt dimerization is a promising strategy for drug therapy as this protein is key to the development of Shigellosis. Our goal was to identify hot-spot residues which, upon mutation, result in a predominantly monomeric state of Tgt. The detailed understanding of the spatial location and stability contribution of the individual interaction hot-spot residues and the plasticity of motifs involved in the interface formation is a crucial prerequisite for the rational identification of drug-like inhibitors addressing the respective dimerization interface. Using computational analyses, we identified hot-spot residues that contribute particularly to dimer stability: a cluster of hydrophobic and aromatic residues as well as several salt bridges. This in silico prediction led to the identification of a promising double mutant, which was validated experimentally. Native nano-ESI mass spectrometry showed that the dimerization of the suggested mutant is largely prevented resulting in a predominantly monomeric state. Crystal structure analysis and enzyme kinetics of the mutant variant further support the evidence for enhanced monomerization and provide first insights into the structural consequences of the dimer destabilization. © 2014 Wiley Periodicals, Inc.

  20. The FTMap family of web servers for determining and characterizing ligand binding hot spots of proteins

    PubMed Central

    Kozakov, Dima; Grove, Laurie E.; Hall, David R.; Bohnuud, Tanggis; Mottarella, Scott; Luo, Lingqi; Xia, Bing; Beglov, Dmitri; Vajda, Sandor

    2016-01-01

    FTMap is a computational mapping server that identifies binding hot spots of macromolecules, i.e., regions of the surface with major contributions to the ligand binding free energy. To use FTMap, users submit a protein, DNA, or RNA structure in PDB format. FTMap samples billions of positions of small organic molecules used as probes and scores the probe poses using a detailed energy expression. Regions that bind clusters of multiple probe types identify the binding hot spots, in good agreement with experimental data. FTMap serves as basis for other servers, namely FTSite to predict ligand binding sites, FTFlex to account for side chain flexibility, FTMap/param to parameterize additional probes, and FTDyn to map ensembles of protein structures. Applications include determining druggability of proteins, identifying ligand moieties that are most important for binding, finding the most bound-like conformation in ensembles of unliganded protein structures, and providing input for fragment based drug design. FTMap is more accurate than classical mapping methods such as GRID and MCSS, and is much faster than the more recent approaches to protein mapping based on mixed molecular dynamics. Using 16 probe molecules, the FTMap server finds the hot spots of an average size protein in less than an hour. Since FTFlex performs mapping for all low energy conformers of side chains in the binding site, its completion time is proportionately longer. PMID:25855957

  1. The role of hot spot mix in the low-foot and high-foot implosions on the NIF

    NASA Astrophysics Data System (ADS)

    Ma, T.; Patel, P. K.; Izumi, N.; Springer, P. T.; Key, M. H.; Atherton, L. J.; Barrios, M. A.; Benedetti, L. R.; Bionta, R.; Bond, E.; Bradley, D. K.; Caggiano, J.; Callahan, D. A.; Casey, D. T.; Celliers, P. M.; Cerjan, C. J.; Church, J. A.; Clark, D. S.; Dewald, E. L.; Dittrich, T. R.; Dixit, S. N.; Döppner, T.; Dylla-Spears, R.; Edgell, D. H.; Epstein, R.; Field, J.; Fittinghoff, D. N.; Frenje, J. A.; Gatu Johnson, M.; Glenn, S.; Glenzer, S. H.; Grim, G.; Guler, N.; Haan, S. W.; Hammel, B. A.; Hatarik, R.; Herrmann, H. W.; Hicks, D.; Hinkel, D. E.; Berzak Hopkins, L. F.; Hsing, W. W.; Hurricane, O. A.; Jones, O. S.; Kauffman, R.; Khan, S. F.; Kilkenny, J. D.; Kline, J. L.; Kozioziemski, B.; Kritcher, A.; Kyrala, G. A.; Landen, O. L.; Lindl, J. D.; Le Pape, S.; MacGowan, B. J.; Mackinnon, A. J.; MacPhee, A. G.; Meezan, N. B.; Merrill, F. E.; Moody, J. D.; Moses, E. I.; Nagel, S. R.; Nikroo, A.; Pak, A.; Parham, T.; Park, H.-S.; Ralph, J. E.; Regan, S. P.; Remington, B. A.; Robey, H. F.; Rosen, M. D.; Rygg, J. R.; Ross, J. S.; Salmonson, J. D.; Sater, J.; Sayre, D.; Schneider, M. B.; Shaughnessy, D.; Sio, H.; Spears, B. K.; Smalyuk, V.; Suter, L. J.; Tommasini, R.; Town, R. P. J.; Volegov, P. L.; Wan, A.; Weber, S. V.; Widmann, K.; Wilde, C. H.; Yeamans, C.; Edwards, M. J.

    2017-05-01

    Hydrodynamic mix of the ablator into the DT fuel layer and hot spot can be a critical performance limitation in inertial confinement fusion implosions. This mix results in increased radiation loss, cooling of the hot spot, and reduced neutron yield. To quantify the level of mix, we have developed a simple model that infers the level of contamination using the ratio of the measured x-ray emission to the neutron yield. The principal source for the performance limitation of the "low-foot" class of implosions appears to have been mix. Lower convergence "high-foot" implosions are found to be less susceptible to mix, allowing velocities of >380 km/s to be achieved.

  2. Biofilm models for the food industry: hot spots for plasmid transfer?

    PubMed

    Van Meervenne, Eva; De Weirdt, Rosemarie; Van Coillie, Els; Devlieghere, Frank; Herman, Lieve; Boon, Nico

    2014-04-01

    Biofilms represent a substantial problem in the food industry, with food spoilage, equipment failure, and public health aspects to consider. Besides, biofilms may be a hot spot for plasmid transfer, by which antibiotic resistance can be disseminated to potential foodborne pathogens. This study investigated biomass and plasmid transfer in dual-species (Pseudomonas putida and Escherichia coli) biofilm models relevant to the food industry. Two different configurations (flow-through and drip-flow) and two different inoculation procedures (donor-recipient and recipient-donor) were tested. The drip-flow configuration integrated stainless steel coupons in the setup while the flow-through configuration included a glass flow cell and silicone tubing. The highest biomass density [10 log (cells cm-²)] was obtained in the silicone tubing when first the recipient strain was inoculated. High plasmid transfer ratios, up to 1/10 (transconjugants/total bacteria), were found. Depending on the order of inoculation, a difference in transfer efficiency between the biofilm models could be found. The ease by which the multiresistance plasmid was transferred highlights the importance of biofilms in the food industry as hot spots for the acquisition of multiresistance plasmids. This can impede the treatment of foodborne illnesses if pathogens acquire this multiresistance in or from the biofilm. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  3. Lack of mutational hot spots during decitabine-mediated HIV-1 mutagenesis.

    PubMed

    Rawson, Jonathan M O; Landman, Sean R; Reilly, Cavan S; Bonnac, Laurent; Patterson, Steven E; Mansky, Louis M

    2015-11-01

    Decitabine has previously been shown to induce lethal mutagenesis of human immunodeficiency virus type 1 (HIV-1). However, the factors that determine the susceptibilities of individual sequence positions in HIV-1 to decitabine have not yet been defined. To investigate this, we performed Illumina high-throughput sequencing of multiple amplicons prepared from proviral DNA that was recovered from decitabine-treated cells infected with HIV-1. We found that decitabine induced an ≈4.1-fold increase in the total mutation frequency of HIV-1, primarily due to a striking ≈155-fold increase in the G-to-C transversion frequency. Intriguingly, decitabine also led to an ≈29-fold increase in the C-to-G transversion frequency. G-to-C frequencies varied substantially (up to ≈80-fold) depending upon sequence position, but surprisingly, mutational hot spots (defined as upper outliers within the mutation frequency distribution) were not observed. We further found that every single guanine position examined was significantly susceptible to the mutagenic effects of decitabine. Taken together, these observations demonstrate for the first time that decitabine-mediated HIV-1 mutagenesis is promiscuous and occurs in the absence of a clear bias for mutational hot spots. These data imply that decitabine-mediated G-to-C mutagenesis is a highly effective antiviral mechanism for extinguishing HIV-1 infectivity. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  4. Are ``Hot Spots'' Hot? - An Overview

    NASA Astrophysics Data System (ADS)

    Foulger, G. R.

    2010-12-01

    The term “hot spot” is taken variously to imply a) the presence of excessive volcanism, or b) that the melt formed in an unusually hot source. Case b) is intrinsic to the plume hypothesis. Temperature anomalies of 200-300 degrees Celsius are expected, though there is widespread downward-revision of this where observations do not support it. It is not self-evident that “hot spots” are hot in the sense of case b), despite the fact that this is widely assumed. Furthermore, a hot source is not strongly supported by observations, and is at odds with many data. The temperature of the mantle has been studied using many different methods. Global oceanic heat flow values were recently assessed, but reveal no evidence for elevated temperatures around proposed plume localities. Mapping surface heat flow is only sensitive to anomalies at the level of 100 degrees Celsius, however. Seismological methods include correlating velocity with crustal thickness at LIPs, measuring transition zone thickness, and mapping velocity, e.g., using tomography. The first of these does not find evidence for elevated temperatures. The latter two are both sensitive to the presence of partial melt and variations in rock composition, in addition to temperature, which is the weakest potential effect. They thus cannot be used as thermometers. In particular, it cannot be assumed that red = hot and blue = cold in tomographic cross sections. Petrological and geochemical approaches include the “global systematics”. This has now been shown to not work for estimating temperature and its application should be discontinued. Mineralogical phase relationships are applied by comparing data from laboratory melting experiments to observations. Olivine control-line analysis has been extensively used in attempts to measure the differences in melt-formation temperature between mid-ocean ridges and melting anomalies. Difficulties arise in choosing the correct olivine geothermometer and because picrite glass

  5. Origin of depleted components in basalt related to the Hawaiian hot spot: Evidence from isotopic and incompatible element ratios

    NASA Astrophysics Data System (ADS)

    Frey, F. A.; Huang, S.; Blichert-Toft, J.; Regelous, M.; Boyet, M.

    2005-02-01

    The radiogenic isotopic ratios of Sr, Nd, Hf, and Pb in basaltic lavas associated with major hot spots, such as Hawaii, document the geochemical heterogeneity of their mantle source. What processes created such heterogeneity? For Hawaiian lavas there has been extensive discussion of geochemically enriched source components, but relatively little attention has been given to the origin of depleted source components, that is, components with the lowest 87Sr/86Sr and highest 143Nd/144Nd and 176Hf/177Hf. The surprisingly important role of a depleted component in the source of the incompatible element-enriched, rejuvenated-stage Hawaiian lavas is well known. A depleted component also contributed significantly to the ˜76-81 Ma lavas erupted at Detroit Seamount in the Emperor Seamount Chain. In both cases, major involvement of MORB-related depleted asthenosphere or lithosphere has been proposed. Detroit Seamount and rejuvenated-stage lavas, however, have important isotopic differences from most Pacific MORB. Specifically, they define trends to relatively unradiogenic Pb isotope ratios, and most Emperor Seamount lavas define a steep trend of 176Hf/177Hf versus 143Nd/144Nd. In addition, lavas from Detroit Seamount and recent rejuvenated-stage lavas have relatively high Ba/Th, a characteristic of lavas associated with the Hawaiian hot spot. It is possible that a depleted component, intrinsic to the hot spot, has contributed to these young and old lavas related to the Hawaiian hot spot. The persistence of such a component over 80 Myr is consistent with a long-lived source, i.e., a plume.

  6. Hot spots of multivariate extreme anomalies in Earth observations

    NASA Astrophysics Data System (ADS)

    Flach, M.; Sippel, S.; Bodesheim, P.; Brenning, A.; Denzler, J.; Gans, F.; Guanche, Y.; Reichstein, M.; Rodner, E.; Mahecha, M. D.

    2016-12-01

    Anomalies in Earth observations might indicate data quality issues, extremes or the change of underlying processes within a highly multivariate system. Thus, considering the multivariate constellation of variables for extreme detection yields crucial additional information over conventional univariate approaches. We highlight areas in which multivariate extreme anomalies are more likely to occur, i.e. hot spots of extremes in global atmospheric Earth observations that impact the Biosphere. In addition, we present the year of the most unusual multivariate extreme between 2001 and 2013 and show that these coincide with well known high impact extremes. Technically speaking, we account for multivariate extremes by using three sophisticated algorithms adapted from computer science applications. Namely an ensemble of the k-nearest neighbours mean distance, a kernel density estimation and an approach based on recurrences is used. However, the impact of atmosphere extremes on the Biosphere might largely depend on what is considered to be normal, i.e. the shape of the mean seasonal cycle and its inter-annual variability. We identify regions with similar mean seasonality by means of dimensionality reduction in order to estimate in each region both the `normal' variance and robust thresholds for detecting the extremes. In addition, we account for challenges like heteroscedasticity in Northern latitudes. Apart from hot spot areas, those anomalies in the atmosphere time series are of particular interest, which can only be detected by a multivariate approach but not by a simple univariate approach. Such an anomalous constellation of atmosphere variables is of interest if it impacts the Biosphere. The multivariate constellation of such an anomalous part of a time series is shown in one case study indicating that multivariate anomaly detection can provide novel insights into Earth observations.

  7. Demonstration of Fuel Hot-Spot Pressure in Excess of 50 Gbar for Direct-Drive, Layered Deuterium-Tritium Implosions on OMEGA.

    PubMed

    Regan, S P; Goncharov, V N; Igumenshchev, I V; Sangster, T C; Betti, R; Bose, A; Boehly, T R; Bonino, M J; Campbell, E M; Cao, D; Collins, T J B; Craxton, R S; Davis, A K; Delettrez, J A; Edgell, D H; Epstein, R; Forrest, C J; Frenje, J A; Froula, D H; Gatu Johnson, M; Glebov, V Yu; Harding, D R; Hohenberger, M; Hu, S X; Jacobs-Perkins, D; Janezic, R; Karasik, M; Keck, R L; Kelly, J H; Kessler, T J; Knauer, J P; Kosc, T Z; Loucks, S J; Marozas, J A; Marshall, F J; McCrory, R L; McKenty, P W; Meyerhofer, D D; Michel, D T; Myatt, J F; Obenschain, S P; Petrasso, R D; Radha, P B; Rice, B; Rosenberg, M J; Schmitt, A J; Schmitt, M J; Seka, W; Shmayda, W T; Shoup, M J; Shvydky, A; Skupsky, S; Solodov, A A; Stoeckl, C; Theobald, W; Ulreich, J; Wittman, M D; Woo, K M; Yaakobi, B; Zuegel, J D

    2016-07-08

    A record fuel hot-spot pressure P_{hs}=56±7  Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium-tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility, these implosions achieved a Lawson parameter ∼60% of the value required for ignition [A. Bose et al., Phys. Rev. E 93, 011201(R) (2016)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure is approximately 40% lower. Three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.

  8. New Fks hot spot for acquired echinocandin resistance in Saccharomyces cerevisiae and its contribution to intrinsic resistance of Scedosporium species.

    PubMed

    Johnson, Michael E; Katiyar, Santosh K; Edlind, Thomas D

    2011-08-01

    Echinocandins represent a new antifungal group with potent activity against Candida species. These lipopeptides inhibit the synthesis of β-1,3-glucan, the major cell wall polysaccharide. Acquired resistance or reduced echinocandin susceptibility (RES) is rare and associated with mutations in two "hot spot" regions of Fks1 or Fks2, the probable β-1,3-glucan synthases. In contrast, many fungi demonstrate intrinsic RES for reasons that remain unclear. We are using Saccharomyces cerevisiae to understand the basis for RES by modeling echinocandin-Fks interaction. Previously characterized mutations confer cross-RES; we screened for mutations conferring differential RES, implying direct interaction of that Fks residue with a variable echinocandin side chain. One mutant (in an fks1Δ background) exhibited ≥16-fold micafungin and anidulafungin versus caspofungin RES. Sequencing identified a novel Fks2 mutation, W714L/Y715N. Equivalent W695L/Y696N and related W695L/F/C mutations in Fks1 generated by site-directed mutagenesis and the isolation of a W695L-equivalent mutation in Candida glabrata confirmed the role of the new "hot spot 3" in RES. Further mutagenesis expanded hot spot 3 to Fks1 residues 690 to 700, yielding phenotypes ranging from cross-RES to differential hypersusceptibility. Fks1 sequences from intrinsically RES Scedosporium species revealed W695F-equivalent substitutions; Fks1 hybrids expressing Scedosporium prolificans hot spot 3 confirmed that this substitution imparts RES.

  9. Hot spots and dark current in advanced plasma wakefield accelerators

    DOE PAGES

    Manahan, G. G.; Deng, A.; Karger, O.; ...

    2016-01-29

    Dark current can spoil witness bunch beam quality and acceleration efficiency in particle beam-driven plasma wakefield accelerators. In advanced schemes, hot spots generated by the drive beam or the wakefield can release electrons from higher ionization threshold levels in the plasma media. Likewise, these electrons may be trapped inside the plasma wake and will then accumulate dark current, which is generally detrimental for a clear and unspoiled plasma acceleration process. The strategies for generating clean and robust, dark current free plasma wake cavities are devised and analyzed, and crucial aspects for experimental realization of such optimized scenarios are discussed.

  10. Sr isotopic composition of Afar volcanics and its implication for mantle evolution

    NASA Astrophysics Data System (ADS)

    Barberi, F.; Civetta, L.; Varet, J.

    1980-10-01

    Investigations of Rb-Sr systematics of basalts from the Afar depression (Ethiopia) indicate the presence of a heterogeneous mantle source region. The Sr isotopic compositions of the basalts from the Afar axial and transverse ranges identify source regions which are enriched in LIL elements and radiogenic Sr (axial ranges) and others which are relatively depleted (transverse ranges). Sr isotopic composition of basalts from the Red Sea, Gulf of Aden and Gulf of Tadjoura, which range from 0.70300 to 0.70340 are also reported and compared with the more radiogenic Afar region, which is characterized by 87Sr/ 86Sr ranging from 0.70328 to 0.70410. Available geochemical and isotopic data suggest that a relation exists between magma composition and the advancement of the rifting process through progressive lithosphere attenuation leading to continental break-up. However, the petrogenetic process is not simple and probably implies a vertically zoned mantle beneath the Afar region. Sr isotopic evidence suggests that the vertically zoned mantle is more radiogenic and enriched in LIL elements in its upper part.

  11. The role of hot spot mix in the low-foot and high-foot implosions on the NIF

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ma, T.; Patel, P. K.; Izumi, N.

    Hydrodynamic mix of the ablator into the DT fuel layer and hot spot can be a critical performance limitation in inertial confinement fusion implosions. This mix results in increased radiation loss, cooling of the hot spot, and reduced neutron yield. To quantify the level of mix, we have developed a simple model that infers the level of contamination using the ratio of the measured x-ray emission to the neutron yield. The principal source for the performance limitation of the “low-foot” class of implosions appears to have been mix. As a result, lower convergence “high-foot” implosions are found to be lessmore » susceptible to mix, allowing velocities of >380 km/s to be achieved.« less

  12. The role of hot spot mix in the low-foot and high-foot implosions on the NIF

    DOE PAGES

    Ma, T.; Patel, P. K.; Izumi, N.; ...

    2017-05-18

    Hydrodynamic mix of the ablator into the DT fuel layer and hot spot can be a critical performance limitation in inertial confinement fusion implosions. This mix results in increased radiation loss, cooling of the hot spot, and reduced neutron yield. To quantify the level of mix, we have developed a simple model that infers the level of contamination using the ratio of the measured x-ray emission to the neutron yield. The principal source for the performance limitation of the “low-foot” class of implosions appears to have been mix. As a result, lower convergence “high-foot” implosions are found to be lessmore » susceptible to mix, allowing velocities of >380 km/s to be achieved.« less

  13. Computational Study of 3-D Hot-Spot Initiation in Shocked Insensitive High-Explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.

    2011-06-01

    High explosive shock sensitivity is controlled by a combination of mechanical response, thermal properties, and chemical properties. The interplay of these physical phenomena in realistic condensed energetic materials is currently lacking. A multiscale computational framework is developed investigating hot spot (void) ignition in a single crystal of an insensitive HE, TATB. Atomistic MD simulations are performed to provide the key chemical reactions and these reaction rates are used in 3-D multiphysics simulations. The multiphysics code, ALE3D, is linked to the chemistry software, Cheetah, and a three-way coupled approach is pursued including hydrodynamics, thermal and chemical analyses. A single spherical air bubble is embedded in the insensitive HE and its collapse due to shock initiation is evolved numerically in time; while the ignition processes due chemical reactions are studied. Our current predictions showcase several interesting features regarding hot spot dynamics including the formation of a ``secondary'' jet. Results obtained with hydro-thermo-chemical processes leading to ignition growth will be discussed for various pore sizes and different shock pressures. LLNL-ABS-471438. This work performed under the auspices of the U.S. Department of Energy by LLNL under Contract DE-AC52-07NA27344.

  14. Mobile Launch Platform Vehicle Assembly Building Area (SWMU 056) Hot Spot 3 Bioremediation Interim Measures Work Plan, Kennedy Space Center, Florida

    NASA Technical Reports Server (NTRS)

    Whitney L. Morrison; Daprato, Rebecca C.

    2016-01-01

    This Interim Measures Work Plan (IMWP) presents an approach and design for the remediation of chlorinated volatile organic compound (CVOC) groundwater impacts using bioremediation (biostimulation and bioaugmentation) in Hot Spot 3, which is defined by the area where CVOC (trichloroethene [TCE], cis-1,2-dichloroethene [cDCE], and vinyl chloride [VC]) concentrations are greater than 10 times their respective Florida Department of Environmental Protection (FDEP) Natural Attenuation Default Concentration (NADC) [10xNADC] near the western Mobile Launch Platform (MLP) structure. The IM treatment area is the Hot Spot 3 area, which is approximately 0.07 acres and extends from approximately 6 to 22 and 41 to 55 feet below land surface (ft BLS). Within Hot Spot 3, a source zone (SZ; area with TCE concentrations greater than 1% solubility [11,000 micrograms per liter (micrograms/L)]) was delineated and is approximately 0.02 acres and extends from approximately 6 to 16 and 41 to 50 ft BLS.

  15. The tectonic and geomagnetic significance of paleomagnetic observations from volcanic rocks from central Afar, Africa

    NASA Astrophysics Data System (ADS)

    Acton, Gary D.; Tessema, Abera; Jackson, Michael; Bilham, Roger

    2000-08-01

    Deformation throughout Afar over the past 2 myr has been characterized by widespread and intense crustal fragmentation that results from inhomogeneous extension across the region. In eastern Afar, this situation has evolved to localized extension associated with the westward propagation of the Gulf of Aden/Gulf of Tadjurah seafloor spreading system into the Asal-Ghoubbet Rift. During the gradual process of rift propagation and localization, crustal blocks in eastern Afar sustained clockwise rotations of ˜11°. To better understand the processes of rift propagation and localization and how they affect the rest of Afar, we have collected and analyzed over 400 oriented paleomagnetic samples from 67 lava flows from central and southern Afar. Unlike eastern Afar, the mean paleomagnetic direction from central Afar indicates that vertical-axis rotations are statistically insignificant (3.6°±4.4°), though small clockwise rotations (<8°) are permitted. Thus, propagation and localization in central Afar have not had the same influence in causing crustal block rotations or, perhaps more likely, have not reached the same stage of evolution as seen in eastern Afar. In addition, several of the lava flows record intriguing geomagnetic field behavior associated with polarity transitions, excursions, or large secular variation events. Interestingly, the transitional or anomalous virtual geomagnetic poles (VGPs) tend to cluster in two nearly antipodal regions, one in the northern Pacific Ocean and the other in the southwest Indian Ocean. One lava flow has recorded both of the antipodal transitional components, with the two components residing in magnetic minerals with unblocking temperatures above and below ˜500°C, respectively. Reheating and partial remagnetization by the overlying flow cannot explain either of the transitional directions because both differ significantly from that of the reversely magnetized overlying flow. The high-temperature component gives a VGP in the

  16. Hot Spots and Mantle Plumes: A Window Into the Deep Earth and a Lesson on How Science Really Works

    NASA Astrophysics Data System (ADS)

    Caplan-Auerbach, J.

    2010-12-01

    Despite years of discussion, debate and controversy over the causes of ocean island volcanism, most students simply learn that such features form from fixed plumes of hot material rising from the core mantle boundary. Although we know that the Hawaiian plume exhibited substantial southward motion, most introductory geology textbooks still report that hot spots are fixed and that the Hawaiian-Emperor bend reflects a change in plate motion. That mantle plumes are the focus of significant controversy within the scientific community is rarely, if ever, discussed, and alternative models for the formation of intraplate volcanoes are ignored. Students may thus complete their studies without learning about the dynamic debate focused on the existence and formation of mantle plumes. This issue represents an opportunity for students to see how science really works, how new models are constructed, and what distinguishes a hypothesis from a theory. The culminating project in Western Washington University’s Introduction to Geophysics class, a course required for the BS degree in geology, focuses on the hot spot and mantle plume debate. For the first nine weeks of the quarter students learn about general topics in geophysics including plate tectonics, magnetism, seismology, gravity and heat flow. At the end of the course, students break into small research groups with the goal of investigating how geophysics may be used to address three questions: (1) Do ocean island volcanoes form from mantle plumes? (2) Are “hot spots” actually hot? (3) Are hot spots stationary? Each group examines how these questions may be addressed using a specific geophysical tool. In addition to the five topics described above, a sixth group investigates the question of “if not hot spots/mantle plumes, how do ocean island volcanoes form?” Students read the current literature on the topic and present their results to their classmates. Presentations focus on topics such as the use of seismic

  17. Predicting "Hot" and "Warm" Spots for Fragment Binding.

    PubMed

    Rathi, Prakash Chandra; Ludlow, R Frederick; Hall, Richard J; Murray, Christopher W; Mortenson, Paul N; Verdonk, Marcel L

    2017-05-11

    Computational fragment mapping methods aim to predict hotspots on protein surfaces where small fragments will bind. Such methods are popular for druggability assessment as well as structure-based design. However, to date researchers developing or using such tools have had no clear way of assessing the performance of these methods. Here, we introduce the first diverse, high quality validation set for computational fragment mapping. The set contains 52 diverse examples of fragment binding "hot" and "warm" spots from the Protein Data Bank (PDB). Additionally, we describe PLImap, a novel protocol for fragment mapping based on the Protein-Ligand Informatics force field (PLIff). We evaluate PLImap against the new fragment mapping test set, and compare its performance to that of simple shape-based algorithms and fragment docking using GOLD. PLImap is made publicly available from https://bitbucket.org/AstexUK/pli .

  18. Seismic Observations From the Afar Rift Dynamics Project: Preliminary Results

    NASA Astrophysics Data System (ADS)

    Hammond, J. O.; Guidarelli, M.; Belachew, M.; Keir, D.; Ayele, A.; Ebinger, C.; Stuart, G.; Kendall, J.

    2008-12-01

    Following the 2005 Dabbahu rifting event in Afar, 9 broadband seismometers were installed around the active rift segment to study the microseismicity associated with this and subsequent dyking events. These recorded more than one year of continuous data. In March 2007, 41 stations were deployed throughout Afar and the adjacent rift flanks as part of a large multi-national, collaboration involving universities and organisations from the UK, US and Ethiopia. This abstract describes the crustal and upper mantle structure results of the first 19 months of data. Bulk crustal structure has been determined using the H-k stacking of receiver functions and thickness varies from ~45 km on the rift margins to ~16 km beneath the northeastern Afar stations. Estimates of Vp/Vs show normal continental crust values (1.7-1.8) on the rift margins, and very high values (2.0-2.2) in Afar. A study of seismic noise interferometry is in early stages, but inversions using 20 s Green's function estimates, with some control from regional surface waves, show evidence for thin crustal regions around the recently rifted Dabbahu segment. To improve our understanding of the physical and compositional properties of the crust and locate regions of high attenuation (an indicator of melt), we determine attenuation (Q) using t* values measured from spectra of P wave arrivals. We present whole path attenuation from source to receiver, which will provide a starting point for a future tomographic inversion. SKS-wave splitting results show sharp changes over small lateral distances (40° over <30 km), with fast directions overlying the Dabbahu segment aligning parallel with the recent diking. This supports ideas of melt dominated anisotropy beneath the Ethiopian rift. Seismic tomography inversions show that in the top 150 km low velocities mimic the trend of the seismicity in Afar. The low velocity anomalies extend from the main Ethiopian rift NE, towards Djibouti, and from Djibouti NW towards the

  19. The Typical Number of Antiprotons Necessary to Heat the Hot Spot in the D-T Fuel Doped with U

    NASA Astrophysics Data System (ADS)

    Shmatov, M. L.

    Fast ignition scenario with heating the hot spot by products of annihilation of antiprotons in the D-T fuel doped with U238 is considered. It is shown that in this scenario the hot spot is being heated effectively only by the fission fragments arising due to annihilation of the antiprotons on the nuclei of uranium. The presented model predicts that fast ignition can be provided by injection of (1.3 to 4.4) x 1015 antiprotons into the D-T fuel compressed to the density of about 200 g/cm3 and containing one nucleus of U238 per about one thousand nuclei of hydrogen isotopes.

  20. Nuclear Star Formation in the Hot-Spot Galaxy NGC 2903

    NASA Technical Reports Server (NTRS)

    Alonso-Herrero, A.; Ryder, S. D.; Knapen, J. H.

    1994-01-01

    We present high-resolution near-infrared imaging obtained using adaptive optics and HST/NICMOS and ground-based spectroscopy of the hot-spot galaxy NGC 2903. Our near-infrared resolution imaging enables us to resolve the infrared hot spots into individual young stellar clusters or groups of these. The spatial distribution of the stellar clusters is not coincident with that of the bright H II regions, as revealed by the HST/NICMOS Pace image. Overall, the circumnuclear star formation in NGC 2903 shows a ring-like morphology with an approximate diameter of 625 pc. The SF properties of the stellar clusters and H II regions have been studied using the photometric and spectroscopic information in conjunction with evolutionary synthesis models. The population of bright stellar clusters shows a very narrow range of ages, 4 to 7 x 10(exp 6) yr after the peak of star formation, or absolute ages 6.5 to 9.5 x 10(exp 6) yr (for the assumed short-duration Gaussian bursts), and luminosities similar to the clusters found in the Antennae interacting galaxy. This population of young stellar clusters accounts for some 7 - 12% of the total stellar mass in the central 625 pc of NGC 2903. The H II regions in the ring of star formation have luminosities close to that of the super-giant H II region 30 Doradus, they are younger than the stellar clusters, and will probably evolve into bright infrared stellar clusters similar to those observed today. We find that the star formation efficiency in the central regions of NGC 2903 is higher than in normal galaxies, approaching the lower end of infrared luminous galaxies.

  1. The effect of current flow direction on motor hot spot allocation by transcranial magnetic stimulation.

    PubMed

    Stephani, Caspar; Paulus, Walter; Sommer, Martin

    2016-01-01

    The objective of this study was to investigate the significance of pulse configurations and current direction for corticospinal activation using transcranial magnetic stimulation (TMS). In 11 healthy subjects (8 female), a motor map for the motor evoked potentials (MEPs) recorded from the first dorsal interosseus (FDI), abductor digiti minimi (ADM), extensor carpi radialis, and biceps brachii (BB) muscles of the dominant side was established. Starting from a manually determined hot spot of the FDI representation, we measured MEPs at equal oriented points on an hexagonal grid, with 7 MEPs recorded at each point, using the following pulse configurations: posteriorly directed monophasic (Mo-P), anteriorly directed monophasic (Mo-A), biphasic with the more relevant second cycle oriented posteriorly (Bi-P) as well as a reversed biphasic condition (Bi-A). For each pulse configuration, a hot spot was determined and a center of gravity (CoG) was calculated. We found that the factor current direction had an effect on location of the CoG-adjusted hot spot in the cranio-caudal axis but not in the latero-medial direction with anteriorly directed pulses locating the CoG more anteriorly and vice versa. In addition, the CoG for the FDI was more laterally than the cortical representations for the abductor digiti minimi (ADM) and extensor carpi radialis (ECR) which were registered as well. The results indicate that direction of the current pulse should be taken into account for determination of the motor representation of a muscle by TMS. © 2015 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of the American Physiological Society and The Physiological Society.

  2. Multifrequency multi-qubit entanglement based on plasmonic hot spots

    PubMed Central

    Ren, Jun; Wu, Tong; Zhang, Xiangdong

    2015-01-01

    The theoretical method to study strong coupling between an ensemble of quantum emitters (QEs) and surface plasmons excited by the nanoparticle cluster has been presented by using a rigorous first-principles electromagnetic Green’s tensor technique. We have demonstrated that multi-qubit entanglements for two-level QEs can be produced at different coupling resonance frequencies, when they locate in the hot spots of the metallic nanoparticle cluster. The duration of quantum beats for such an entanglement can reach two orders longer than that for the entanglement in a photonic cavity. The phenomenon originates from collective coupling resonance excitation of the cluster. At the frequency of single scattering resonance, the entanglement cannot be produced although the single QE spontaneous decay rate is very big. PMID:26350051

  3. the role of magmatism and segmentation in the structural evolution of the Afar Rift

    NASA Astrophysics Data System (ADS)

    Stab, Martin; Bellahsen, Nicolas; Pik, Raphaël; Quidelleur, Xavier; Ayalew, Dereje; Leroy, Sylvie

    2015-04-01

    A common issue at volcanic passive margins (VPM) is the lack of observation of the structures that accommodate stretching and thinning. Indeed, the most distal parts and the Ocean-Continent Transition is often masked by thick seaward-dipping reflectors (SDR) sequences. Some current challenges are then to know if the observed thinning fit the divergence (thinning vs dyking); and what is the rheological effect of magma supply that re-thickens the crust during extension? In the Central Afar magmatic rift (Ethiopia), the structures related to rifting since Oligocene are cropping out onshore and are well preserved. We present here a new structural model based on field data and lavas (U-Th/He and K/Ar) datings along a balanced cross-section of the Central Afar Western Margin. We mapped continent-ward normal fault array affecting highly tilted trapp series (29-30 Ma) unconformably overlain by tilted Oligo-Miocene (25-7 Ma) acid series. The main extensional and necking/thinning event took place during the end of this Miocene magmatic episode. The Pliocene flood basalt (Stratoid series) is erupted over an already thinned crust. The bulk extension for the Afar Western Margin is ß ~ 2.50. Our main findings are: - Oligo-Miocene deformation in Central Afar appears to be largely distributed through space and time ("magmatic wide rift"). It has been accommodated in a 200-300 km wide strip being a diffuse incipient plate boundary during the whole rifting history until the formation of present-day magmatic segments. There is a period of tectonic quiescence accompanied with few magma erupted at the surface between 25 Ma and 7 Ma. We suggest that tectonic and magmatic activity was focused at that time on the highly faulted Danakil block and Southern Red Sea, away from our study zone. - ß ~ 2.50 is higher than the thinning factor of ~1.30 observed in geophysical studies. We propose that the continental crust in Central Afar has been re-thickened during extension by the syn

  4. Silver Nanoparticle-Decorated Shape-Memory Polystyrene Sheets as Highly Sensitive Surface-Enhanced Raman Scattering Substrates with a Thermally Inducible Hot Spot Effect.

    PubMed

    Mengesha, Zebasil Tassew; Yang, Jyisy

    2016-11-15

    In this study, an active surface-enhanced Raman scattering (SERS) substrate with a thermally inducible hot spot effect for sensitive measurement of Raman-active molecules was successfully fabricated from silver nanoparticle (AgNP)-decorated shape-memory polystyrene (SMP) sheets. To prepare the SERS substrate, SMP sheets were first pretreated with n-octylamine for effective decoration with AgNPs. By varying the formulation and condition of the reduction reaction, AgNP-decorated SMP (Ag@SMP) substrates were successfully prepared with optimized particle gaps to produce inducible hot spot effects on thermal shrink. High-quality SERS spectra were easily obtained with enhancement factors higher than 10 8 by probing with aromatic thiols. Several Ag@SMP substrates produced under different reaction conditions were explored for the creation of inducible hot spot effects. The results indicated that AgNP spacing is crucial for strong hot spot effects. The suitability of Ag@SMP substrates for quantification was also evaluated according to the detection of adenine. Results confirmed that prepared Ag@SMP substrates were highly suitable for quantitative analysis because they yielded an estimated limit of detection as low as 120 pg/cm 2 , a linear range of up to 7 ng/cm 2 , and a regression coefficient (R 2 ) of 0.9959. Ag@SMP substrates were highly reproducible; the average relative standard deviation for all measurements was less than 10%.

  5. Barriers and facilitators to accessing skilled birth attendants in Afar region, Ethiopia.

    PubMed

    King, Rosemary; Jackson, Ruth; Dietsch, Elaine; Hailemariam, Asseffa

    2015-05-01

    to explore barriers and facilitators that enable women to access skilled birth attendance in Afar Region, Ethiopia. researchers used a Key Informant Research approach (KIR), whereby Health Extension Workers participated in an intensive training workshop and conducted interviews with Afar women in their communities. Data was also collected from health-care workers through questionnaires, interviews and focus groups. fourteen health extension workers were key informants and interviewers; 33 women and eight other health-care workers with a range of experience in caring for Afar childbearing women provided data as individuals and in focus groups. participants identified friendly service, female skilled birth attendants (SBA) and the introduction of the ambulance service as facilitators to SBA. There are many barriers to accessing SBA, including women׳s low status and restricted opportunities for decision making, lack of confidence in health-care facilities, long distances, cost, domestic workload, and traditional practices which include a preference for birthing at home with a traditional birth attendant. many Afar men and women expressed a lack of confidence in the services provided at health-care facilities which impacts on skilled birth attendance utilisation. ambulance services that are free of charge to women are effective as a means to transfer women to a hospital for emergency care if required and expansion of ambulance services would be a powerful facilitator to increasing institutional birth. Skilled birth attendants working in institutions need to ensure their practice is culturally, physically and emotionally safe if more Afar women are to accept their midwifery care. Adequate equipping and staffing of institutions providing emergency obstetric and newborn care will assist in improving community perceptions of these services. Most importantly, mutual respect and collaboration between traditional birth attendants (Afar women׳s preferred caregiver), health

  6. Norepinephrine ignites local hot spots of neuronal excitation: How arousal amplifies selectivity in perception and memory

    PubMed Central

    Mather, Mara; Clewett, David; Sakaki, Michiko; Harley, Carolyn W.

    2018-01-01

    Long Abstract Existing brain-based emotion-cognition theories fail to explain arousal’s ability to both enhance and impair cognitive processing. In the Glutamate Amplifies Noradrenergic Effects (GANE) model outlined in this paper, we propose that arousal-induced norepinephrine (NE) released from the locus coeruleus (LC) biases perception and memory in favor of salient, high priority representations at the expense of lower priority representations. This increase in gain under phasic arousal occurs via synaptic self-regulation of NE based on glutamate levels. When the LC is phasically active, elevated levels of glutamate at the site of prioritized representations increase local NE release, creating “NE hot spots.” At these local hot spots, glutamate and NE release are mutually enhancing and amplify activation of prioritized representations. This excitatory effect contrasts with widespread NE suppression of weaker representations via lateral and auto-inhibitory processes. On a broader scale, hot spots increase oscillatory synchronization across neural ensembles transmitting high priority information. Furthermore, key brain structures that detect or pre-determine stimulus priority interact with phasic NE release to preferentially route such information through large-scale functional brain networks. A surge of NE before, during or after encoding enhances synaptic plasticity at sites of high glutamate activity, triggering local protein synthesis processes that enhance selective memory consolidation. Together, these noradrenergic mechanisms increase perceptual and memory selectivity under arousal. Beyond explaining discrepancies in the emotion-cognition literature, GANE reconciles and extends previous influential theories of LC neuromodulation by highlighting how NE can produce such different outcomes in processing based on priority. PMID:26126507

  7. PILOT-SCALE INCINERATION OF PCB-CONTAMINATED SEDIMENTS FROM THE NEW BEDFORD HARBOR HOT SPOT SUPERFUND SITE

    EPA Science Inventory

    Testing was performed at the EPA's Incineration Research Facility (IRF) to determine the incinerability of contaminated marine sediment from the Hot Spot in the New Bedford Harbor Superfund Site. he contaminants at this site were PCBs, at concentrations up to >200,000 mg/kg, and ...

  8. A comparison of Ki-67 counting methods in luminal Breast Cancer: The Average Method vs. the Hot Spot Method.

    PubMed

    Jang, Min Hye; Kim, Hyun Jung; Chung, Yul Ri; Lee, Yangkyu; Park, So Yeon

    2017-01-01

    In spite of the usefulness of the Ki-67 labeling index (LI) as a prognostic and predictive marker in breast cancer, its clinical application remains limited due to variability in its measurement and the absence of a standard method of interpretation. This study was designed to compare the two methods of assessing Ki-67 LI: the average method vs. the hot spot method and thus to determine which method is more appropriate in predicting prognosis of luminal/HER2-negative breast cancers. Ki-67 LIs were calculated by direct counting of three representative areas of 493 luminal/HER2-negative breast cancers using the two methods. We calculated the differences in the Ki-67 LIs (ΔKi-67) between the two methods and the ratio of the Ki-67 LIs (H/A ratio) of the two methods. In addition, we compared the performance of the Ki-67 LIs obtained by the two methods as prognostic markers. ΔKi-67 ranged from 0.01% to 33.3% and the H/A ratio ranged from 1.0 to 2.6. Based on the receiver operating characteristic curve method, the predictive powers of the KI-67 LI measured by the two methods were similar (Area under curve: hot spot method, 0.711; average method, 0.700). In multivariate analysis, high Ki-67 LI based on either method was an independent poor prognostic factor, along with high T stage and node metastasis. However, in repeated counts, the hot spot method did not consistently classify tumors into high vs. low Ki-67 LI groups. In conclusion, both the average and hot spot method of evaluating Ki-67 LI have good predictive performances for tumor recurrence in luminal/HER2-negative breast cancers. However, we recommend using the average method for the present because of its greater reproducibility.

  9. A comparison of Ki-67 counting methods in luminal Breast Cancer: The Average Method vs. the Hot Spot Method

    PubMed Central

    Jang, Min Hye; Kim, Hyun Jung; Chung, Yul Ri; Lee, Yangkyu

    2017-01-01

    In spite of the usefulness of the Ki-67 labeling index (LI) as a prognostic and predictive marker in breast cancer, its clinical application remains limited due to variability in its measurement and the absence of a standard method of interpretation. This study was designed to compare the two methods of assessing Ki-67 LI: the average method vs. the hot spot method and thus to determine which method is more appropriate in predicting prognosis of luminal/HER2-negative breast cancers. Ki-67 LIs were calculated by direct counting of three representative areas of 493 luminal/HER2-negative breast cancers using the two methods. We calculated the differences in the Ki-67 LIs (ΔKi-67) between the two methods and the ratio of the Ki-67 LIs (H/A ratio) of the two methods. In addition, we compared the performance of the Ki-67 LIs obtained by the two methods as prognostic markers. ΔKi-67 ranged from 0.01% to 33.3% and the H/A ratio ranged from 1.0 to 2.6. Based on the receiver operating characteristic curve method, the predictive powers of the KI-67 LI measured by the two methods were similar (Area under curve: hot spot method, 0.711; average method, 0.700). In multivariate analysis, high Ki-67 LI based on either method was an independent poor prognostic factor, along with high T stage and node metastasis. However, in repeated counts, the hot spot method did not consistently classify tumors into high vs. low Ki-67 LI groups. In conclusion, both the average and hot spot method of evaluating Ki-67 LI have good predictive performances for tumor recurrence in luminal/HER2-negative breast cancers. However, we recommend using the average method for the present because of its greater reproducibility. PMID:28187177

  10. Preferential Binding of Hot Spot Mutant p53 Proteins to Supercoiled DNA In Vitro and in Cells

    PubMed Central

    Brázdová, Marie; Navrátilová, Lucie; Tichý, Vlastimil; Němcová, Kateřina; Lexa, Matej; Hrstka, Roman; Pečinka, Petr; Adámik, Matej; Vojtesek, Borivoj; Paleček, Emil; Deppert, Wolfgang; Fojta, Miroslav

    2013-01-01

    Hot spot mutant p53 (mutp53) proteins exert oncogenic gain-of-function activities. Binding of mutp53 to DNA is assumed to be involved in mutp53-mediated repression or activation of several mutp53 target genes. To investigate the importance of DNA topology on mutp53-DNA recognition in vitro and in cells, we analyzed the interaction of seven hot spot mutp53 proteins with topologically different DNA substrates (supercoiled, linear and relaxed) containing and/or lacking mutp53 binding sites (mutp53BS) using a variety of electrophoresis and immunoprecipitation based techniques. All seven hot spot mutp53 proteins (R175H, G245S, R248W, R249S, R273C, R273H and R282W) were found to have retained the ability of wild-type p53 to preferentially bind circular DNA at native negative superhelix density, while linear or relaxed circular DNA was a poor substrate. The preference of mutp53 proteins for supercoiled DNA (supercoil-selective binding) was further substantiated by competition experiments with linear DNA or relaxed DNA in vitro and ex vivo. Using chromatin immunoprecipitation, the preferential binding of mutp53 to a sc mutp53BS was detected also in cells. Furthermore, we have shown by luciferase reporter assay that the DNA topology influences p53 regulation of BAX and MSP/MST1 promoters. Possible modes of mutp53 binding to topologically constrained DNA substrates and their biological consequences are discussed. PMID:23555710

  11. Hot Spot at Yellowstone

    ERIC Educational Resources Information Center

    Dress, Abby

    2005-01-01

    Within this huge national park (over two million acres spread across Wyoming, Montana, and Idaho) are steaming geysers, hot springs, bubbling mudpots, and fumaroles, or steam vents. Drives on the main roads of Yellowstone take tourists through the major hot attractions, which also include Norris Geyser Basin, Upper and Lower Geyser Basin, West…

  12. Plate kinematics of the Afro-Arabian Rift System with emphasis on the Afar Depression, Ethiopia

    NASA Astrophysics Data System (ADS)

    Bottenberg, Helen Carrie

    This work utilizes the Four-Dimensional Plates (4DPlates) software, and Differential Interferometric Synthetic Aperture Radar (DInSAR) to examine plate-scale, regional-scale and local-scale kinematics of the Afro-Arabian Rift System with emphasis on the Afar Depression in Ethiopia. First, the 4DPlates is used to restore the Red Sea, the Gulf of Aden, the Afar Depression and the Main Ethiopian Rift to development of a new model that adopts two poles of rotation for Arabia. Second, the 4DPlates is used to model regional-scale and local-scale kinematics within the Afar Depression. Most plate reconstruction models of the Afro-Arabian Rift System relies on considering the Afar Depression as a typical rift-rift-rift triple junction where the Arabian, Somali and Nubian (African) plates are separating by the Red Sea, the Gulf of Aden and the Main Ethiopian Rift suggesting the presence of "sharp and rigid" plate boundaries. However, at the regional-scale the Afar kinematics are more complex due to stepping of the Red Sea propagator and the Gulf of Aden propagator onto Afar as well as the presence of the Danakil, Ali Sabieh and East Central Block "micro-plates". This study incorporates the motion of these micro-plates into the regional-scale model and defined the plate boundary between the Arabian and the African plates within Afar as likely a diffused zone of extensional strain within the East Central Block. Third, DInSAR technology is used to create ascending and descending differential interferograms from the Envisat Advanced Synthetic Aperture Radar (ASAR) C-Band data for the East Central Block to image active crustal deformation related to extensional tectonics and volcanism. Results of the DInSAR study indicate no strong strain localization but rather a diffused pattern of deformation across the entire East Central Block.

  13. Finite volume analysis of temperature effects induced by active MRI implants: 2. Defects on active MRI implants causing hot spots.

    PubMed

    Busch, Martin H J; Vollmann, Wolfgang; Grönemeyer, Dietrich H W

    2006-05-26

    Active magnetic resonance imaging implants, for example stents, stent grafts or vena cava filters, are constructed as wireless inductively coupled transmit and receive coils. They are built as a resonator tuned to the Larmor frequency of a magnetic resonance system. The resonator can be added to or incorporated within the implant. This technology can counteract the shielding caused by eddy currents inside the metallic implant structure. This may allow getting diagnostic information of the implant lumen (in stent stenosis or thrombosis for example). The electro magnetic rf-pulses during magnetic resonance imaging induce a current in the circuit path of the resonator. A by material fatigue provoked partial rupture of the circuit path or a broken wire with touching surfaces can set up a relatively high resistance on a very short distance, which may behave as a point-like power source, a hot spot, inside the body part the resonator is implanted to. This local power loss inside a small volume can reach (1/4) of the total power loss of the intact resonating circuit, which itself is proportional to the product of the resonator volume and the quality factor and depends as well from the orientation of the resonator with respect to the main magnetic field and the imaging sequence the resonator is exposed to. First an analytical solution of a hot spot for thermal equilibrium is described. This analytical solution with a definite hot spot power loss represents the worst case scenario for thermal equilibrium inside a homogeneous medium without cooling effects. Starting with this worst case assumptions additional conditions are considered in a numerical simulation, which are more realistic and may make the results less critical. The analytical solution as well as the numerical simulations use the experimental experience of the maximum hot spot power loss of implanted resonators with a definite volume during magnetic resonance imaging investigations. The finite volume analysis

  14. Finite volume analysis of temperature effects induced by active MRI implants: 2. Defects on active MRI implants causing hot spots

    PubMed Central

    Busch, Martin HJ; Vollmann, Wolfgang; Grönemeyer, Dietrich HW

    2006-01-01

    Background Active magnetic resonance imaging implants, for example stents, stent grafts or vena cava filters, are constructed as wireless inductively coupled transmit and receive coils. They are built as a resonator tuned to the Larmor frequency of a magnetic resonance system. The resonator can be added to or incorporated within the implant. This technology can counteract the shielding caused by eddy currents inside the metallic implant structure. This may allow getting diagnostic information of the implant lumen (in stent stenosis or thrombosis for example). The electro magnetic rf-pulses during magnetic resonance imaging induce a current in the circuit path of the resonator. A by material fatigue provoked partial rupture of the circuit path or a broken wire with touching surfaces can set up a relatively high resistance on a very short distance, which may behave as a point-like power source, a hot spot, inside the body part the resonator is implanted to. This local power loss inside a small volume can reach ¼ of the total power loss of the intact resonating circuit, which itself is proportional to the product of the resonator volume and the quality factor and depends as well from the orientation of the resonator with respect to the main magnetic field and the imaging sequence the resonator is exposed to. Methods First an analytical solution of a hot spot for thermal equilibrium is described. This analytical solution with a definite hot spot power loss represents the worst case scenario for thermal equilibrium inside a homogeneous medium without cooling effects. Starting with this worst case assumptions additional conditions are considered in a numerical simulation, which are more realistic and may make the results less critical. The analytical solution as well as the numerical simulations use the experimental experience of the maximum hot spot power loss of implanted resonators with a definite volume during magnetic resonance imaging investigations. The finite

  15. Upper Mantle Structure beneath Afar: inferences from surface waves.

    NASA Astrophysics Data System (ADS)

    Sicilia, D.; Montagner, J.; Debayle, E.; Lepine, J.; Leveque, J.; Cara, M.; Ataley, A.; Sholan, J.

    2001-12-01

    The Afar hotspot is related to one of the most important plume from a geodynamic point of view. It has been advocated to be the surface expression of the South-West African Superswell. Below the lithosphere, the Afar plume might feed other hotspots in central Africa (Hadiouche et al., 1989; Ebinger & Sleep, 1998). The processes of interaction between crust, lithosphere and plume are not well understood. In order to gain insight into the scientific issue, we have performed a surface-wave tomography covering the Horn of Africa. A data set of 1404 paths for Rayleigh waves and 473 paths for Love waves was selected in the period range 45-200s. They were collected from the permanent IRIS and GEOSCOPE networks and from the PASSCAL experiment, in Tanzania and Saudi Arabia. Other data come from the broadband stations deployed in Ethiopia and Yemen in the framework of the French INSU program ``Horn of Africa''. The results presented here come from a path average phase velocities obtained with a method based on a least-squares minimization (Beucler et al., 2000). The local phase velocity distribution and the azimuthal anisotropy were simultaneously retrieved by using the tomographic technique of Montagner (1986). A correction of the data is applied according to the crustal structure of the 3SMAC model (Nataf & Ricard, 1996). We find low velocities down to 200 km depth beneath the Red Sea, the Gulf of Aden, Afars, the Ethiopian Plateau and southern Arabia. High velocities are present in the eastern Arabia and the Tanzania Craton. The anisotropy beneath Afar seems to be complex, but enables to map the flow pattern at the interface lithosphere-asthenosphere. The results presented here are complementary to those obtained by Debayle et al. (2001) at upper-mantle transition zone depths using waveform inversion of higher Rayle igh modes.

  16. Coherent and incoherent J /ψ photonuclear production in an energy-dependent hot-spot model

    NASA Astrophysics Data System (ADS)

    Cepila, J.; Contreras, J. G.; Krelina, M.

    2018-02-01

    In a previous publication, we have presented a model for the photoproduction of J /ψ vector mesons off protons, where the proton structure in the impact-parameter plane is described by an energy-dependent hot-spot profile. Here we extend this model to study the photonuclear production of J /ψ vector mesons in coherent and incoherent interactions of heavy nuclei. We study two methods to extend the model to the nuclear case: using the standard Glauber-Gribov formalism and using geometric scaling to obtain the nuclear saturation scale. We find that the incoherent cross section changes sizably with the inclusion of subnucleonic hot spots and that this change is energy dependent. We propose to search for this behavior by measuring the ratio of the incoherent to coherent cross sections at different energies. We compare the results of our model to results from the Relativistic Heavy-Ion Collider (RHIC) and from run 1 at the Large Hadron Collider (LHC), finding satisfactory agreement. We also present predictions for the LHC at the new energies reached in run 2. The predictions include J /ψ production in ultraperipheral collisions, as well as the recently observed photonuclear production in peripheral collisions.

  17. TERT promoter hot spot mutations are frequent in Indian cervical and oral squamous cell carcinomas.

    PubMed

    Vinothkumar, Vilvanathan; Arunkumar, Ganesan; Revathidevi, Sundaramoorthy; Arun, Kanagaraj; Manikandan, Mayakannan; Rao, Arunagiri Kuha Deva Magendhra; Rajkumar, Kottayasamy Seenivasagam; Ajay, Chandrasekar; Rajaraman, Ramamurthy; Ramani, Rajendren; Murugan, Avaniyapuram Kannan; Munirajan, Arasambattu Kannan

    2016-06-01

    Squamous cell carcinoma (SCC) of the uterine cervix and oral cavity are most common cancers in India. Telomerase reverse transcriptase (TERT) overexpression is one of the hallmarks for cancer, and activation through promoter mutation C228T and C250T has been reported in variety of tumors and often shown to be associated with aggressive tumors. In the present study, we analyzed these two hot spot mutations in 181 primary tumors of the uterine cervix and oral cavity by direct DNA sequencing and correlated with patient's clinicopathological characteristics. We found relatively high frequency of TERT hot spot mutations in both cervical [21.4 % (30/140)] and oral [31.7 % (13/41)] squamous cell carcinomas. In cervical cancer, TERT promoter mutations were more prevalent (25 %) in human papilloma virus (HPV)-negative cases compared to HPV-positive cases (20.6 %), and both TERT promoter mutation and HPV infection were more commonly observed in advanced stage tumors (77 %). Similarly, the poor and moderately differentiated tumors of the uterine cervix had both the TERT hot spot mutations and HPV (16 and 18) at higher frequency (95.7 %). Interestingly, we observed eight homozygous mutations (six 228TT and two 250TT) only in cervical tumors, and all of them were found to be positive for high-risk HPV. To the best of our knowledge, this is the first study from India reporting high prevalence of TERT promoter mutations in primary tumors of the uterine cervix and oral cavity. Our results suggest that TERT reactivation through promoter mutation either alone or in association with the HPV oncogenes (E6 and E7) could play an important role in the carcinogenesis of cervical and oral cancers.

  18. Hot spot abundance, ridge subduction and the evolution of greenstone belts

    NASA Technical Reports Server (NTRS)

    Abbott, D.; Hoffman, S.

    1986-01-01

    A number of plate tectonic hypotheses have been proposed to explain the origin of Archaean and Phanerozoic greenstone/ophiolite terranes. In these models, ophiolites or greenstone belts represent the remnants of one or more of the following: island arcs, rifted continental margins, oceanic crustal sections, and hot spot volcanic products. If plate tectonics has been active since the creation of the Earth, it is logical to suppose that the same types of tectonic processes which form present day ophiolites also formed Archaean greenstone belts. However, the relative importance of the various tectonic processes may well have been different and are discussed.

  19. Hot spot mutations in Finnish non-small cell lung cancers.

    PubMed

    Mäki-Nevala, Satu; Sarhadi, Virinder Kaur; Rönty, Mikko; Kettunen, Eeva; Husgafvel-Pursiainen, Kirsti; Wolff, Henrik; Knuuttila, Aija; Knuutila, Sakari

    2016-09-01

    Non-small cell lung cancer (NSCLC) is a common cancer with a poor prognosis. The aim of this study was to screen Finnish NSCLC tumor samples for common cancer-related mutations by targeted next generation sequencing and to determine their concurrences and associations with clinical features. Sequencing libraries were prepared from DNA isolated from formalin-fixed, paraffin-embedded tumor material of 425 patients using the AmpliSeq Colon and Lung panel covering mutational hot spot regions of 22 cancer genes. Sequencing was performed with the Ion Torrent Personal Genome Machine (PGM). Data analysis of the hot spot mutations revealed mutations in 77% of the patients, with 7% having 3 or more mutations reported in the Catalogue of Somatic Mutations in Cancer (COSMIC) database. Two of the most frequently mutated genes were TP53 (46%) and KRAS (25%). KRAS codon 12 mutations were the most recurrently occurring mutations. EGFR mutations were significantly associated with adenocarcinoma, female gender and never/light-smoking history; CTNNB1 mutations with light ex-smokers, PIK3CA and TP53 mutations with squamous cell carcinoma, and KRAS with adenocarcinoma. TP53 mutations were most prevalent in current smokers and ERBB2, ERBB4, PIK3CA, NRAS, NOTCH1, FBWX7, PTEN and STK11 mutations occurred exclusively in a group of ever-smokers, however the association was not statistically significant. No mutation was found that associated with asbestos exposure. Finnish NSCLC patients have a similar mutation profile as other Western patients, however with a higher frequency of BRAF mutations but a lower frequency of STK11 and ERBB2 mutations. Moreover, TP53 mutations occurred frequently with other gene mutations, most commonly with KRAS, MET, EGFR and PIK3CA mutations. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  20. Identification of a Non-Gatekeeper Hot Spot for Drug-Resistant Mutations in mTOR Kinase.

    PubMed

    Wu, Tzung-Ju; Wang, Xiaowen; Zhang, Yanjie; Meng, Linghua; Kerrigan, John E; Burley, Stephen K; Zheng, X F Steven

    2015-04-21

    Protein kinases are therapeutic targets for human cancer. However, "gatekeeper" mutations in tyrosine kinases cause acquired clinical resistance, limiting long-term treatment benefits. mTOR is a key cancer driver and drug target. Numerous small-molecule mTOR kinase inhibitors have been developed, with some already in human clinical trials. Given our clinical experience with targeted therapeutics, acquired drug resistance in mTOR is thought likely, but not yet documented. Herein, we describe identification of a hot spot (L2185) for drug-resistant mutations, which is distinct from the gatekeeper site, and a chemical scaffold refractory to drug-resistant mutations. We also provide new insights into mTOR kinase structure and function. The hot spot mutations are potentially useful as surrogate biomarkers for acquired drug resistance in ongoing clinical trials and future treatments and for the design of the next generation of mTOR-targeted drugs. Our study provides a foundation for further research into mTOR kinase function and targeting. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

  1. The southern stratospheric gravity wave hot spot: individual waves and their momentum fluxes measured by COSMIC GPS-RO

    NASA Astrophysics Data System (ADS)

    Hindley, N. P.; Wright, C. J.; Smith, N. D.; Mitchell, N. J.

    2015-07-01

    Nearly all general circulation models significantly fail to reproduce the observed behaviour of the southern wintertime polar vortex. It has been suggested that these biases result from an underestimation of gravity wave drag on the atmosphere at latitudes near 60° S, especially around the "hot spot" of intense gravity wave fluxes above the mountainous Southern Andes and Antarctic peninsula. Here, we use Global Positioning System radio occultation (GPS-RO) data from the COSMIC satellite constellation to determine the properties of gravity waves in the hot spot and beyond. We show considerable southward propagation to latitudes near 60° S of waves apparently generated over the southern Andes. We propose that this propagation may account for much of the wave drag missing from the models. Furthermore, there is a long leeward region of increased gravity wave energy that sweeps eastwards from the mountains over the Southern Ocean. Despite its striking nature, the source of this region has historically proved difficult to determine. Our observations suggest that this region includes both waves generated locally and orographic waves advected downwind from the hot spot. We describe and use a new wavelet-based analysis technique for the quantitative identification of individual waves from COSMIC temperature profiles. This analysis reveals different geographical regimes of wave amplitude and short-timescale variability in the wave field over the Southern Ocean. Finally, we use the increased numbers of closely spaced pairs of profiles from the deployment phase of the COSMIC constellation in 2006 to make estimates of gravity wave horizontal wavelengths. We show that, given sufficient observations, GPS-RO can produce physically reasonable estimates of stratospheric gravity wave momentum flux in the hot spot that are consistent with measurements made by other techniques. We discuss our results in the context of previous satellite and modelling studies and explain how they

  2. The Red Queen model of recombination hot-spot evolution: a theoretical investigation.

    PubMed

    Latrille, Thibault; Duret, Laurent; Lartillot, Nicolas

    2017-12-19

    In humans and many other species, recombination events cluster in narrow and short-lived hot spots distributed across the genome, whose location is determined by the Zn-finger protein PRDM9. To explain these fast evolutionary dynamics, an intra-genomic Red Queen model has been proposed, based on the interplay between two antagonistic forces: biased gene conversion, mediated by double-strand breaks, resulting in hot-spot extinction, followed by positive selection favouring new PRDM9 alleles recognizing new sequence motifs. Thus far, however, this Red Queen model has not been formalized as a quantitative population-genetic model, fully accounting for the intricate interplay between biased gene conversion, mutation, selection, demography and genetic diversity at the PRDM9 locus. Here, we explore the population genetics of the Red Queen model of recombination. A Wright-Fisher simulator was implemented, allowing exploration of the behaviour of the model (mean equilibrium recombination rate, diversity at the PRDM9 locus or turnover rate) as a function of the parameters (effective population size, mutation and erosion rates). In a second step, analytical results based on self-consistent mean-field approximations were derived, reproducing the scaling relations observed in the simulations. Empirical fit of the model to current data from the mouse suggests both a high mutation rate at PRDM9 and strong biased gene conversion on its targets.This article is part of the themed issue 'Evolutionary causes and consequences of recombination rate variation in sexual organisms'. © 2017 The Authors.

  3. The Red Queen model of recombination hot-spot evolution: a theoretical investigation

    PubMed Central

    Latrille, Thibault; Duret, Laurent

    2017-01-01

    In humans and many other species, recombination events cluster in narrow and short-lived hot spots distributed across the genome, whose location is determined by the Zn-finger protein PRDM9. To explain these fast evolutionary dynamics, an intra-genomic Red Queen model has been proposed, based on the interplay between two antagonistic forces: biased gene conversion, mediated by double-strand breaks, resulting in hot-spot extinction, followed by positive selection favouring new PRDM9 alleles recognizing new sequence motifs. Thus far, however, this Red Queen model has not been formalized as a quantitative population-genetic model, fully accounting for the intricate interplay between biased gene conversion, mutation, selection, demography and genetic diversity at the PRDM9 locus. Here, we explore the population genetics of the Red Queen model of recombination. A Wright–Fisher simulator was implemented, allowing exploration of the behaviour of the model (mean equilibrium recombination rate, diversity at the PRDM9 locus or turnover rate) as a function of the parameters (effective population size, mutation and erosion rates). In a second step, analytical results based on self-consistent mean-field approximations were derived, reproducing the scaling relations observed in the simulations. Empirical fit of the model to current data from the mouse suggests both a high mutation rate at PRDM9 and strong biased gene conversion on its targets. This article is part of the themed issue ‘Evolutionary causes and consequences of recombination rate variation in sexual organisms’. PMID:29109226

  4. New Fks Hot Spot for Acquired Echinocandin Resistance in Saccharomyces cerevisiae and Its Contribution to Intrinsic Resistance of Scedosporium Species▿

    PubMed Central

    Johnson, Michael E.; Katiyar, Santosh K.; Edlind, Thomas D.

    2011-01-01

    Echinocandins represent a new antifungal group with potent activity against Candida species. These lipopeptides inhibit the synthesis of β-1,3-glucan, the major cell wall polysaccharide. Acquired resistance or reduced echinocandin susceptibility (RES) is rare and associated with mutations in two “hot spot” regions of Fks1 or Fks2, the probable β-1,3-glucan synthases. In contrast, many fungi demonstrate intrinsic RES for reasons that remain unclear. We are using Saccharomyces cerevisiae to understand the basis for RES by modeling echinocandin-Fks interaction. Previously characterized mutations confer cross-RES; we screened for mutations conferring differential RES, implying direct interaction of that Fks residue with a variable echinocandin side chain. One mutant (in an fks1Δ background) exhibited ≥16-fold micafungin and anidulafungin versus caspofungin RES. Sequencing identified a novel Fks2 mutation, W714L/Y715N. Equivalent W695L/Y696N and related W695L/F/C mutations in Fks1 generated by site-directed mutagenesis and the isolation of a W695L-equivalent mutation in Candida glabrata confirmed the role of the new “hot spot 3” in RES. Further mutagenesis expanded hot spot 3 to Fks1 residues 690 to 700, yielding phenotypes ranging from cross-RES to differential hypersusceptibility. Fks1 sequences from intrinsically RES Scedosporium species revealed W695F-equivalent substitutions; Fks1 hybrids expressing Scedosporium prolificans hot spot 3 confirmed that this substitution imparts RES. PMID:21576441

  5. Causes of hot-spot wetland loss in the Mississippi delta plain

    USGS Publications Warehouse

    Morton, R.A.; Tiling, G.; Ferina, N.F.

    2003-01-01

    Field surveys and sediment cores were used to estimate marsh erosion and land subsidence at Madison Bay, a well-known wetland loss hot spot in coastal Louisiana. Former marshes of Madison Bay are under about 1 m of water. Nearly two-thirds of the permanent flooding was caused by rapid subsidence in the late 1960s, whereas the other third was caused by subsequent erosion. Subsidence rates near Madison Bay since the 1960s (???20 mm/yr) are an order of magnitude greater than deltaic subsidence rates averaged for the past 400-4000 yr (???2 mm/yr). The rapid acceleration and unexpected decline in wetland losses in the Mississippi delta plain are difficult to explain on the basis of most physical and biogeochemical processes. There are, however, close temporal and spatial correlations among regional wetland loss, high subsidence rates, and large-volume fluid production from nearby hydrocarbon fields. The decreased rates of wetland loss since the 1970s may be related to decreased rates of subsidence caused by significantly decreased rates of subsurface fluid withdrawal. Annual fluid production from the Lapeyrouse, Lirette, and Bay Baptiste fields that encompass Madison Bay accelerated in the 1960s, peaked about 1970, and then declined abruptly. Large decreases in pore pressure in the Lapeyrouse field have likely altered subsurface stresses and reactivated a major fault that coincides with the wetland loss hot spot. Therefore, wetland losses at Madison Bay can be closely linked to rapid subsidence and possible fault reactivation induced by long-term, large-volume hydrocarbon production. ?? 2003. The American Association of Petroleum Geologists/Division of Environmental Geosciences. All rights reserved.

  6. Detection of surface carbon and hydrocarbons in hot spot regions of niobium superconducting rf cavities by Raman spectroscopy

    DOE PAGES

    Cao, C.; Argonne National Lab.; Ford, D.; ...

    2013-06-26

    Raman microscopy/spectroscopy measurements are presented on high purity niobium (Nb) samples, including pieces from hot spot regions of a tested superconducting rf cavity that exhibit a high density of etch pits. Measured spectra are compared with density functional theory calculations of Raman-active, vibrational modes of possible surface Nb-O and Nb-H complexes. The Raman spectra inside particularly rough pits in all Nb samples show clear differences from surrounding areas, exhibiting enhanced intensity and sharp peaks. While some of the sharp peaks are consistent with calculated NbH and NbH 2 modes, there is better overall agreement with C-H modes in chain-type hydrocarbons.more » Other spectra reveal two broader peaks attributed to amorphous carbon. Niobium foils annealed to >2000°C in high vacuum develop identical Raman peaks when subjected to cold working. Regions with enhanced C and O have also been found by SEM/EDX spectroscopy in the hot spot samples and cold-worked foils, corroborating the Raman results. Such regions with high concentrations of impurities are expected to suppress the local superconductivity and this may explain the correlation between hot spots in superconducting rf (SRF) cavities and the observation of a high density of surface pits. Finally, the origin of localized high carbon and hydrocarbon regions is unclear at present but it is suggested that particular processing steps in SRF cavity fabrication may be responsible.« less

  7. Detection of surface carbon and hydrocarbons in hot spot regions of niobium superconducting rf cavities by Raman spectroscopy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Cao, C.; Argonne National Lab.; Ford, D.

    Raman microscopy/spectroscopy measurements are presented on high purity niobium (Nb) samples, including pieces from hot spot regions of a tested superconducting rf cavity that exhibit a high density of etch pits. Measured spectra are compared with density functional theory calculations of Raman-active, vibrational modes of possible surface Nb-O and Nb-H complexes. The Raman spectra inside particularly rough pits in all Nb samples show clear differences from surrounding areas, exhibiting enhanced intensity and sharp peaks. While some of the sharp peaks are consistent with calculated NbH and NbH 2 modes, there is better overall agreement with C-H modes in chain-type hydrocarbons.more » Other spectra reveal two broader peaks attributed to amorphous carbon. Niobium foils annealed to >2000°C in high vacuum develop identical Raman peaks when subjected to cold working. Regions with enhanced C and O have also been found by SEM/EDX spectroscopy in the hot spot samples and cold-worked foils, corroborating the Raman results. Such regions with high concentrations of impurities are expected to suppress the local superconductivity and this may explain the correlation between hot spots in superconducting rf (SRF) cavities and the observation of a high density of surface pits. Finally, the origin of localized high carbon and hydrocarbon regions is unclear at present but it is suggested that particular processing steps in SRF cavity fabrication may be responsible.« less

  8. Tuning and Switching Enantioselectivity of Asymmetric Carboligation in an Enzyme through Mutational Analysis of a Single Hot Spot.

    PubMed

    Wechsler, Cindy; Meyer, Danilo; Loschonsky, Sabrina; Funk, Lisa-Marie; Neumann, Piotr; Ficner, Ralf; Brodhun, Florian; Müller, Michael; Tittmann, Kai

    2015-12-01

    Enantioselective bond making and breaking is a hallmark of enzyme action, yet switching the enantioselectivity of the reaction is a difficult undertaking, and typically requires extensive screening of mutant libraries and multiple mutations. Here, we demonstrate that mutational diversification of a single catalytic hot spot in the enzyme pyruvate decarboxylase gives access to both enantiomers of acyloins acetoin and phenylacetylcarbinol, important pharmaceutical precursors, in the case of acetoin even starting from the unselective wild-type protein. Protein crystallography was used to rationalize these findings and to propose a mechanistic model of how enantioselectivity is controlled. In a broader context, our studies highlight the efficiency of mechanism-inspired and structure-guided rational protein design for enhancing and switching enantioselectivity of enzymatic reactions, by systematically exploring the biocatalytic potential of a single hot spot. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  9. A Comparison of the Hot Spot and the Average Cancer Cell Counting Methods and the Optimal Cutoff Point of the Ki-67 Index for Luminal Type Breast Cancer.

    PubMed

    Arima, Nobuyuki; Nishimura, Reiki; Osako, Tomofumi; Nishiyama, Yasuyuki; Fujisue, Mamiko; Okumura, Yasuhiro; Nakano, Masahiro; Tashima, Rumiko; Toyozumi, Yasuo

    2016-01-01

    In this case-control study, we investigated the most suitable cell counting area and the optimal cutoff point of the Ki-67 index. Thirty recurrent cases were selected among hormone receptor (HR)-positive/HER2-negative breast cancer patients. As controls, 90 nonrecurrent cases were randomly selected by allotting 3 controls to each recurrent case based on the following criteria: age, nodal status, tumor size, and adjuvant endocrine therapy alone. Both the hot spot and the average area of the tumor were evaluated on a Ki-67 immunostaining slide. The median Ki-67 index value at the hot spot and average area were 25.0 and 14.5%, respectively. Irrespective of the area counted, the Ki-67 index value was significantly higher in all of the recurrent cases (p < 0.0001). The multivariate analysis revealed that the Ki-67 index value of 20% at the hot spot was the most suitable cutoff point for predicting recurrence. Moreover, higher x0394;Ki-67 index value (the difference between the hot spot and the average area, ≥10%) and lower progesterone receptor expression (<20%) were significantly correlated with recurrence. A higher Ki-67 index value at the hot spot strongly correlated with recurrence, and the optimal cutoff point was found to be 20%. © 2015 S. Karger AG, Basel.

  10. Nanoparticle-nanoparticle vs. nanoparticle-substrate hot spot contributions to the SERS signal: studying Raman labelled monomers, dimers and trimers.

    PubMed

    Sergiienko, Sergii; Moor, Kamila; Gudun, Kristina; Yelemessova, Zarina; Bukasov, Rostislav

    2017-02-08

    We used a combination of Raman microscopy, AFM and TEM to quantify the influence of dimerization on the surface enhanced Raman spectroscopy (SERS) signal for gold and silver nanoparticles (NPs) modified with Raman reporters and situated on gold, silver, and aluminum films and a silicon wafer. The overall increases in the mean SERS enhancement factor (EF) upon dimerization (up by 43% on average) and trimerisation (up by 96% on average) of AuNPs and AgNPs on the studied metal films are within a factor of two, which is moderate when compared to most theoretical models. However, the maximum ratio of EFs for some dimers to the mean EF of monomers can be as high as 5.5 for AgNPs on a gold substrate. In contrast, for dimerization and trimerization of gold and silver NPs on silicon, the mean EF increases by 1-2 orders of magnitude relative to the mean EF of single NPs. Therefore, hot spots in the interparticle gap between gold nanoparticles rather than hot spots between Au nanoparticles and the substrate dominate SERS enhancement for dimers and trimers on a silicon substrate. However, Raman labeled noble metal nanoparticles on plasmonic metal films generate on average SERS enhancement of the same order of magnitude for both types of hot spot zones (e.g. NP/NP and NP/metal film).

  11. Digital image analysis of Ki67 in hot spots is superior to both manual Ki67 and mitotic counts in breast cancer.

    PubMed

    Stålhammar, Gustav; Robertson, Stephanie; Wedlund, Lena; Lippert, Michael; Rantalainen, Mattias; Bergh, Jonas; Hartman, Johan

    2018-05-01

    During pathological examination of breast tumours, proliferative activity is routinely evaluated by a count of mitoses. Adding immunohistochemical stains of Ki67 provides extra prognostic and predictive information. However, the currently used methods for these evaluations suffer from imperfect reproducibility. It is still unclear whether analysis of Ki67 should be performed in hot spots, in the tumour periphery, or as an average of the whole tumour section. The aim of this study was to compare the clinical relevance of mitoses, Ki67 and phosphohistone H3 in two cohorts of primary breast cancer specimens (total n = 294). Both manual and digital image analysis scores were evaluated for sensitivity and specificity for luminal B versus A subtype as defined by PAM50 gene expression assays, for high versus low transcriptomic grade, for axillary lymph node status, and for prognostic value in terms of prediction of overall and relapse-free survival. Digital image analysis of Ki67 outperformed the other markers, especially in hot spots. Tumours with high Ki67 expression and high numbers of phosphohistone H3-positive cells had significantly increased hazard ratios for all-cause mortality within 10 years from diagnosis. Replacing manual mitotic counts with digital image analysis of Ki67 in hot spots increased the differences in overall survival between the highest and lowest histological grades, and added significant prognostic information. Digital image analysis of Ki67 in hot spots is the marker of choice for routine analysis of proliferation in breast cancer. © 2017 John Wiley & Sons Ltd.

  12. Seismic Imaging of the crust and upper mantle beneath Afar, Ethiopia

    NASA Astrophysics Data System (ADS)

    Hammond, J. O.; Kendall, J. M.; Stuart, G. W.; Ebinger, C. J.

    2009-12-01

    In March 2007 41 seismic stations were deployed in north east Ethiopia. These stations recorded until October 2009, whereupon the array was condensed to 13 stations. Here we show estimates of crustal structure derived from receiver functions and upper mantle velocity structure, derived from tomography and shear-wave splitting using the first 2.5 years of data. Bulk crustal structure has been determined by H-k stacking receiver functions. Crustal Thickness varies from ~45km on the rift margins to ~16km beneath the northeastern Afar stations. Estimates of Vp/Vs show normal continental crust values (1.7-1.8) on the rift margins, and very high values (2.0-2.2) in Afar, similar to results for the Main Ethiopian Rift (MER). This supports ideas of high levels of melt in the crust beneath the Ethiopian Rift. Additionally, we use a common conversion point migration technique to obtain high resolution images of crustal structure beneath the region. Both techniques show a linear region of thin crust (~16km) trending north-south, the same trend as the Red Sea rift. SKS-wave splitting results show a general north east-south west fast direction in the MER, systematically rotating to a more north-south fast direction towards the Red Sea. Additionally, stations close to the recent Dabbahu diking episode show sharp lateral changes over small lateral distances (40° over <30km), with fast directions overlying the Dabbahu segment aligning parallel with the recent diking. This supports ideas of melt dominated anisotropy beneath the Ethiopian rift. The magnitude of splitting in this region is smaller than that seen at the MER, suggesting a thinner region of melt, or less focused melt is causing the anisotropy. Seismic tomography inversions show that in the top 150km low velocities highlight plate boundaries. The low velocity anomalies extend from the main Ethiopian rift NE, towards Djibouti, and from Djibouti NW towards the Dabbahu segment The lowest velocities exist on the rift

  13. Strain transfer between disconnected, propagating rifts in Afar

    NASA Astrophysics Data System (ADS)

    Manighetti, I.; Tapponnier, P.; Courtillot, V.; Gallet, Y.; Jacques, E.; Gillot, P.-Y.

    2001-01-01

    We showed before that both the Aden and Red Sea plate boundaries are currently rifting and propagating along two distinct paths into Afar through the opening of a series of disconnected, propagating rifts. Here we use new geochronological, tectonic, and paleomagnetic data that we acquired mostly in the southeastern part of Afar to examine the geometry, kinematics, and time-space evolution of faulting related to strain transfer processes. It appears that transfer of strain is accommodated by a bookshelf faulting mechanism wherever rifts or plate boundaries happen to overlap without being connected. This mechanism implies the rotation about a vertical axis of small rigid blocks along rift-parallel faults that are shown to slip with a left-lateral component, which is as important as their normal component of slip (rates of ˜2-3 mm/yr). By contrast, where rifts do not overlap, either a classic transform fault (Maskali) or an oblique transfer zone (Mak'arrasou) kinematically connects them. The length of the Aden-Red Sea overlap has increased in the last ˜0.9 Myr, as the Aden plate boundary propagated northward into Afar. As a consequence, the first-order blocks that we identify within the overlap did not all rotate during the same time-span nor by the same amounts. Similarly, the major faults that bound them did not necessarily initiate and grow as their neighboring faults did. Despite these variations in strain distribution and kinematics, the overlap kept accommodating a constant amount of strain (7 to 15% of the extension amount imposed by plate driving forces), which remained distributed on a limited number (seven or eight) of major faults, each one having slipped at constant rates (˜3 and 2 mm/yr for vertical and lateral rates, respectively). The fault propagation rates and the block rotation rates that we either measure or deduce are so fast (30-130 mm/yr and 15-38°/Myr, respectively) that they imply that strain transfer processes are transient, as has been

  14. New Crustal Thickness for Djibouti, Afar, Using Seismic Techniques

    NASA Astrophysics Data System (ADS)

    Dugda, Mulugeta; Bililign, Solomon

    2008-10-01

    Crustal thickness and Poisson's ratio for the seismic station ATD in Djibouti, Afar, has been investigated using two seismic techniques (H-κ stacking of receiver functions and a joint inversion of receiver functions and surface wave group velocities). Both techniques give consistent results of crustal thickness 23±1.5 km and Poisson's ratio 0.31±0.02. We also determined a mean P-wave velocity (Vp) of ˜6.2 km/s but ˜6.9-7.0 km/s below a 2 - 5 km thick low velocity layer at the surface. Previous studies of crustal structure for Djibouti reported that the crust is 6 to 11 km thick while our study shows that the crust beneath Djibouti is between 20 and 25 km. This study argues that the crustal thickness values reported for Djibouti for the last 3 decades were not consistent with the reports for the other neighboring region in central and eastern Afar. Our results for ATD in Djibouti, however, are consistent with the reports of crustal thickness in many other parts of central and eastern Afar. We attribute this difference to how the Moho (the crust-mantle discontinuity) is defined (an increase of Vp to 7.4 km/s in this study vs. 6.9 km/s in previous studies).

  15. Illicit Drug Users in the Tanzanian Hinterland: Population Size Estimation Through Key Informant-Driven Hot Spot Mapping.

    PubMed

    Ndayongeje, Joel; Msami, Amani; Laurent, Yovin Ivo; Mwankemwa, Syangu; Makumbuli, Moza; Ngonyani, Alois M; Tiberio, Jenny; Welty, Susie; Said, Christen; Morris, Meghan D; McFarland, Willi

    2018-02-12

    We mapped hot spots and estimated the numbers of people who use drugs (PWUD) and who inject drugs (PWID) in 12 regions of Tanzania. Primary (ie, current and past PWUD) and secondary (eg, police, service providers) key informants identified potential hot spots, which we visited to verify and count the number of PWUD and PWID present. Adjustments to counts and extrapolation to regional estimates were done by local experts through iterative rounds of discussion. Drug use, specifically cocaine and heroin, occurred in all regions. Tanga had the largest numbers of PWUD and PWID (5190 and 540, respectively), followed by Mwanza (3300 and 300, respectively). Findings highlight the need to strengthen awareness of drug use and develop prevention and harm reduction programs with broader reach in Tanzania. This exercise provides a foundation for understanding the extent and locations of drug use, a baseline for future size estimations, and a sampling frame for future research.

  16. Cellular imaging by targeted assembly of hot-spot SERS and photoacoustic nanoprobes using split-fluorescent protein scaffolds.

    PubMed

    Köker, Tuğba; Tang, Nathalie; Tian, Chao; Zhang, Wei; Wang, Xueding; Martel, Richard; Pinaud, Fabien

    2018-02-09

    The in cellulo assembly of plasmonic nanomaterials into photo-responsive probes is of great interest for many bioimaging and nanophotonic applications but remains challenging with traditional nucleic acid scaffolds-based bottom-up methods. Here, we address this quandary using split-fluorescent protein (FP) fragments as molecular glue and switchable Raman reporters to assemble gold or silver plasmonic nanoparticles (NPs) into photonic clusters directly in live cells. When targeted to diffusing surface biomarkers in cancer cells, the NPs self-assemble into surface-enhanced Raman-scattering (SERS) nanoclusters having hot spots homogenously seeded by the reconstruction of full-length FPs. Within plasmonic hot spots, autocatalytic activation of the FP chromophore and near-field amplification of its Raman fingerprints enable selective and sensitive SERS imaging of targeted cells. This FP-driven assembly of metal colloids also yields enhanced photoacoustic signals, allowing the hybrid FP/NP nanoclusters to serve as contrast agents for multimodal SERS and photoacoustic microscopy with single-cell sensitivity.

  17. Universal Scaling of Robust Thermal Hot Spot and Ionic Current Enhancement by Focused Ohmic Heating in a Conic Nanopore

    PubMed Central

    Pan, Zehao; Wang, Ceming; Li, Meng; Chang, Hsueh-Chia

    2017-01-01

    A stable nanoscale thermal hot spot, with temperature approaching 100 °C, is shown to be sustained by localized Ohmic heating of a focused electric field at the tip of a slender conic nanopore. The self-similar (length-independent) conic geometry allows us to match the singular heat source at the tip to the singular radial heat loss from the slender cone to obtain a self-similar steady temperature profile along the cone and the resulting ionic current conductance enhancement due to viscosity reduction. The universal scaling, which depends only on a single dimensionless parameter Z, collapses the measured conductance data and computed temperature profiles in ion-track conic nanopores and conic nanopipettes. The collapsed numerical data reveal universal values for the hot-spot location and temperature in an aqueous electrolyte. PMID:27715110

  18. Universal Scaling of Robust Thermal Hot Spot and Ionic Current Enhancement by Focused Ohmic Heating in a Conic Nanopore

    NASA Astrophysics Data System (ADS)

    Pan, Zehao; Wang, Ceming; Li, Meng; Chang, Hsueh-Chia

    2016-09-01

    A stable nanoscale thermal hot spot, with temperature approaching 100 °C , is shown to be sustained by localized Ohmic heating of a focused electric field at the tip of a slender conic nanopore. The self-similar (length-independent) conic geometry allows us to match the singular heat source at the tip to the singular radial heat loss from the slender cone to obtain a self-similar steady temperature profile along the cone and the resulting ionic current conductance enhancement due to viscosity reduction. The universal scaling, which depends only on a single dimensionless parameter Z , collapses the measured conductance data and computed temperature profiles in ion-track conic nanopores and conic nanopipettes. The collapsed numerical data reveal universal values for the hot-spot location and temperature in an aqueous electrolyte.

  19. Universal Scaling of Robust Thermal Hot Spot and Ionic Current Enhancement by Focused Ohmic Heating in a Conic Nanopore.

    PubMed

    Pan, Zehao; Wang, Ceming; Li, Meng; Chang, Hsueh-Chia

    2016-09-23

    A stable nanoscale thermal hot spot, with temperature approaching 100 °C, is shown to be sustained by localized Ohmic heating of a focused electric field at the tip of a slender conic nanopore. The self-similar (length-independent) conic geometry allows us to match the singular heat source at the tip to the singular radial heat loss from the slender cone to obtain a self-similar steady temperature profile along the cone and the resulting ionic current conductance enhancement due to viscosity reduction. The universal scaling, which depends only on a single dimensionless parameter Z, collapses the measured conductance data and computed temperature profiles in ion-track conic nanopores and conic nanopipettes. The collapsed numerical data reveal universal values for the hot-spot location and temperature in an aqueous electrolyte.

  20. New hot spot on Io discovered by NIMS during orbit C9

    NASA Technical Reports Server (NTRS)

    1997-01-01

    The Near-Infrared Mapping Spectrometer (NIMS) on Galileo observes Io on nearly every orbit as part of a program monitoring the level of volcanic activity on this moon. Io is the most volcanically active body in the Solar System and NIMS has discovered many new volcanoes. The latest addition to the inventory was discovered during orbit C9, at Shamash Patera, located on the side of Io facing away from Jupiter. The image above shows, on the left, the portion of Io imaged during this observation as seen by Voyager. The image on the right shows Io at 4.99 microns (in the infrared). Some of the disk is in darkness, making the identification of these hot spots easier. New names have been given to some of the newly discovered features. The hot spots Isum, Mulungu and Tupan have been active since their discovery during the G1 orbit. Zamama, an active region between Prometheus and Isum, was discovered during G1. It was active through orbit E4 but has since faded considerably.

    This image was taken on June 28, 1997, at a resolution of 302 km/pixel.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov.

  1. Wafer hot spot identification through advanced photomask characterization techniques: part 2

    NASA Astrophysics Data System (ADS)

    Choi, Yohan; Green, Michael; Cho, Young; Ham, Young; Lin, Howard; Lan, Andy; Yang, Richer; Lung, Mike

    2017-03-01

    Historically, 1D metrics such as Mean to Target (MTT) and CD Uniformity (CDU) have been adequate for mask end users to evaluate and predict the mask impact on the wafer process. However, the wafer lithographer's process margin is shrinking at advanced nodes to a point that classical mask CD metrics are no longer adequate to gauge the mask contribution to wafer process error. For example, wafer CDU error at advanced nodes is impacted by mask factors such as 3-dimensional (3D) effects and mask pattern fidelity on sub-resolution assist features (SRAFs) used in Optical Proximity Correction (OPC) models of ever-increasing complexity. To overcome the limitation of 1D metrics, there are numerous on-going industry efforts to better define wafer-predictive metrics through both standard mask metrology and aerial CD methods. Even with these improvements, the industry continues to struggle to define useful correlative metrics that link the mask to final device performance. In part 1 of this work, we utilized advanced mask pattern characterization techniques to extract potential hot spots on the mask and link them, theoretically, to issues with final wafer performance. In this paper, part 2, we complete the work by verifying these techniques at wafer level. The test vehicle (TV) that was used for hot spot detection on the mask in part 1 will be used to expose wafers. The results will be used to verify the mask-level predictions. Finally, wafer performance with predicted and verified mask/wafer condition will be shown as the result of advanced mask characterization. The goal is to maximize mask end user yield through mask-wafer technology harmonization. This harmonization will provide the necessary feedback to determine optimum design, mask specifications, and mask-making conditions for optimal wafer process margin.

  2. Stress field during early magmatism in the Ali Sabieh Dome, Djibouti, SE Afar rift

    NASA Astrophysics Data System (ADS)

    Sue, Christian; Le Gall, Bernard; Daoud, Ahmed Mohamed

    2014-09-01

    The so-called Ali Sabieh range, SE Afar rift, exhibits an atypical antiform structure occurring in the overall extensional tectonic context of the Afar triple junction. We dynamically analyzed the brittle deformation of this specific structural high using four different methods in order to better constrain the tectonic evolution of this key-area in the Afar depression. Paleostress inversions appear highly consistent using the four methods, which a posteriori validates this approach. Computed paleostress fields document two major signals: an early E-W extensional field, and a later transcurrent field, kinematically consistent with the previous one. The Ali Sabieh range may have evolved continuously during Oligo-Miocene times from large-scale extensional to transcurrent tectonism, as the result of probable local stress permutation between σ1 and σ2 stress axes.

  3. Characteristics and health effects of BTEX in a hot spot for urban pollution.

    PubMed

    Dehghani, Mansooreh; Fazlzadeh, Mehdi; Sorooshian, Armin; Tabatabaee, Hamid Reza; Miri, Mohammad; Baghani, Abbas Norouzian; Delikhoon, Mahdieh; Mahvi, Amir Hossein; Rashidi, Majid

    2018-07-15

    This study reports a spatiotemporal characterization of toluene, benzene, ethylbenzene, and xylenes concentrations (BTEX) in an urban hot spot in Iran, specifically at an bus terminal region in Shiraz. Sampling was carried out according to NIOSH Compendium Method 1501. The inverse distance weighting (IDW) method was applied for spatial mapping. The Monte Carlo simulation technique was applied to evaluate carcinogenic and non-carcinogenic risk owing to BTEX exposure. The highest average BTEX concentrations were observed for benzene in the morning (at 7:00-9:00 A.M. local time) (26.15 ± 17.65 µg/m 3 ) and evening (at 6:00-8:00 P.M. local time) (34.44 ± 15.63 µg/m 3 ). The benzene to toluene ratios in the morning and evening were 2.02 and 3.07, respectively. The main sources of BTEX were gas stations and a municipal solid waste transfer station. The inhalation lifetime cancer risk (LTCR) for benzene in the morning and evening were 1.96 × 10 -4 and 2.49 × 10 -4 , respectively, which exceeds the recommended value by US EPA and WHO. The hazard quotient (HQ) of all these pollutants was less than 1. The results of this work have implications for public health near 'hot spots' such as IKBT where large populations are exposed to carcinogenic emissions. Copyright © 2018 Elsevier Inc. All rights reserved.

  4. Replacing cottonseed meal with ground Prosopis juliflora pods; effect on intake, weight gain and carcass parameters of Afar sheep fed pasture hay basal diet.

    PubMed

    Yasin, Mohammed; Animut, Getachew

    2014-08-01

    The experiment was conducted to determine the supplementary feeding value of ground Prosopis juliflora pod (Pjp) and cottonseed meal (CSM) and their mixtures on feed intake, body weight gain and carcass parameters of Afar sheep fed a basal diet of pasture hay. Twenty-five yearling fat-tailed Afar rams with mean initial live weight 17.24 ± 1.76 kg (mean ± SD) were used in a randomized complete block design. Animals were blocked on their initial body weight. The experiment was conducted for 12 weeks and carcass evaluation followed. Treatments were hay alone ad libitum (T 1) or with 300 g CSM (T 2), 300 g Pjp (T 5), 2:1 ratio (T 3) and 1:2 ratio of CSM : Pjp (T 4). The CP contents of the hay, CSM and Pjp were 10.5, 44.5 and 16.7 %, respectively. Hay DM intake was higher (P < 0.05) for non-supplemented and total DM intake was lower in non-supplemented. Average daily weight gain (ADG) was lower (P < 0.05) for T 1 compared to all supplemented treatments except T 5. Hot carcass weight and rib-eye muscle area also followed the same trend like that of ADG. Compared with feeding hay alone, supplementing with CSM or a mixture of CSM and Pjp appeared to be a better feeding strategy, biologically, for yearling Afar rams.

  5. Spectral induced polarization as a tool to map subsurface biogeochemical hot spots: a first laboratory evaluation in the Fe-S system

    NASA Astrophysics Data System (ADS)

    Nordsiek, Sven; Gilfedder, Ben; Frei, Sven

    2017-04-01

    Zones of intense biogeochemical reactivity (hot spots) arise in the saturated subsurface at the interface between regions with oxidizing and reducing conditions. Hot spots are both sinks and sources of different chemical compounds, thus they are of particular importance for element cycling in the subsurface. However, the investigation of hot spot structures is difficult, because they are not directly identifiable from the surface and can only be investigated by invasive methods in the subsurface. Additionally, they often form in sensitive wetland ecosystems where only non-destructive measurements are applicable to avoid significant degradation of these sensitive environments. Under these circumstances, geophysical methods may provide useful tools to identify biogeochemically active regions. One of the most important biogeochemical reactions in wetlands is the reduction of sulphate and formation and accumulation of FexSy minerals (where x and y delineate mineral stoichiometry). These reactions only occur in specific hot spots where specific chemical and microbial conditions are met. Within a research project concerning biogeochemical transformations and turnover in wetlands, we investigate the applicability of the geoelectrical method of spectral induced polarization (SIP) to locate and monitor regions containing polarizing FexSy particles as indicator for biogeochemical hot spots. After developing and testing a sample holder and a set of non-polarizing electrodes for laboratory SIP measurements, we performed experiments on natural soil samples taken from the hyporheic zone of a local river channel. The collected material originates from a location known for biogeochemical activity. The sample contains a high percentage of dark grayish/black sediment interpreted as FexSy, and possibly pyrite (FeS2). The material was homogenized and split into four samples. The FexSy concentration was adjusted to three different levels by oxidation using H2O2. For all samples we

  6. Superconductivity mediated by quantum critical antiferromagnetic fluctuations: The rise and fall of hot spots

    NASA Astrophysics Data System (ADS)

    Wang, Xiaoyu; Schattner, Yoni; Berg, Erez; Fernandes, Rafael M.

    2017-05-01

    In several unconventional superconductors, the highest superconducting transition temperature Tc is found in a region of the phase diagram where the antiferromagnetic transition temperature extrapolates to zero, signaling a putative quantum critical point. The elucidation of the interplay between these two phenomena—high-Tc superconductivity and magnetic quantum criticality—remains an important piece of the complex puzzle of unconventional superconductivity. In this paper, we combine sign-problem-free quantum Monte Carlo simulations and field-theoretical analytical calculations to unveil the microscopic mechanism responsible for the superconducting instability of a general low-energy model, called the spin-fermion model. In this approach, low-energy electronic states interact with each other via the exchange of quantum critical magnetic fluctuations. We find that even in the regime of moderately strong interactions, both the superconducting transition temperature and the pairing susceptibility are governed not by the properties of the entire Fermi surface, but instead by the properties of small portions of the Fermi surface called hot spots. Moreover, Tc increases with increasing interaction strength, until it starts to saturate at the crossover from hot-spots-dominated to Fermi-surface-dominated pairing. Our work provides not only invaluable insights into the system parameters that most strongly affect Tc, but also important benchmarks to assess the origin of superconductivity in both microscopic models and actual materials.

  7. Detection of direct and indirect noise generated by synthetic hot spots in a duct

    NASA Astrophysics Data System (ADS)

    De Domenico, Francesca; Rolland, Erwan O.; Hochgreb, Simone

    2017-04-01

    Sound waves in a combustor are generated from fluctuations in the heat release rate (direct noise) or the acceleration of entropy, vorticity or compositional perturbations through nozzles or turbine guide vanes (indirect or entropy noise). These sound waves are transmitted downstream as well as reflected upstream of the acceleration point, contributing to the overall noise emissions, or triggering combustion instabilities. Previous experiments attempted to isolate indirect noise by generating thermoacoustic hot spots electrically and measuring the transmitted acoustic waves, yet there are no measurements on the backward propagating entropy and acoustic waves. This work presents the first measurements which clearly separate the direct and indirect noise contributions to pressure fluctuations upstream of the acceleration point. Synthetic entropy spots are produced by unsteady electrical heating of a grid of thin wires located in a tube. Compression waves (direct noise) are generated from this heating process. The hot spots are then advected with the mean flow and finally accelerated through an orifice plate located at the end of the tube, producing a strong acoustic signature which propagates upstream (indirect noise). The convective time is selected to be longer than the heating pulse length, in order to obtain a clear time separation between direct and indirect noise in the overall pressure trace. The contribution of indirect noise to the overall noise is shown to be non-negligible either in subsonic or sonic throat conditions. However, the absolute amplitude of direct noise is larger than the corresponding fraction of indirect noise, explaining the difficulty in clearly identifying the two contributions when they are merged. Further, the work shows the importance of using appropriate pressure transducer instrumentation and correcting for the respective transfer functions in order to account for low frequency effects in the determination of pressure fluctuations.

  8. PILOT-SCALE INCINERATION OF PCB-CONTAMINATED SEDIMENTS FROM THE HOT SPOT OF THE NEW BEDFORD HARBOR SUPERFUND SITE

    EPA Science Inventory

    Testing was performed at the EPA's Incineration Research Facility (IRF) to determine the incinerability of contaminated marine sediment from the Hot Spot in the New Bedford Harbor Superfund Site. he contaminants at this site were PCBs, at concentration up to >200,000 mg/kb, and m...

  9. Strain distribution across magmatic margins during the breakup stage: Seismicity patterns in the Afar rift zone

    NASA Astrophysics Data System (ADS)

    Brown, C.; Ebinger, C. J.; Belachew, M.; Gregg, T.; Keir, D.; Ayele, A.; Aronovitz, A.; Campbell, E.

    2008-12-01

    Fault patterns record the strain history along passive continental margins, but geochronological constraints are, in general, too sparse to evaluate these patterns in 3D. The Afar depression in Ethiopia provides a unique setting to evaluate the time and space relations between faulting and magmatism across an incipient passive margin that formed above a mantle plume. The margin comprises a high elevation flood basalt province with thick, underplated continental crust, a narrow fault-line escarpment underlain by stretched and intruded crust, and a broad zone of highly intruded, mafic crust lying near sealevel. We analyze fault and seismicity patterns across and along the length of the Afar rift zone to determine the spatial distribution of strain during the final stages of continental breakup, and its relation to active magmatism and dike intrusions. Seismicity data include historic data and 2005-2007 data from the collaborative US-UK-Ethiopia Afar Geodynamics Project that includes the 2005-present Dabbahu rift episode. Earthquake epicenters cluster within discrete, 50 km-long magmatic segments that lack any fault linkage. Swarms also cluster along the fault-line scarp between the unstretched and highly stretched Afar rift zone; these earthquakes may signal release of stresses generated by large lateral density contrasts. We compare Coulomb static stress models with focal mechanisms and fault kinematics to discriminate between segmented magma intrusion and crank- arm models for the central Afar rift zone.

  10. Hot-spot tectonics of Eistla Regio, Venus: Results from Magellan images and Pioneer Venus gravity

    NASA Technical Reports Server (NTRS)

    Grimm, Robert E.; Phillips, Roger J.

    1991-01-01

    Eistla Regio (ER) is a broad, low, discontinuous topographic rise striking roughly EW at low northern latitudes of Venus. Some 2000 x 7000 km in dimensions, it is the third largest rise in planform on Venus after Aphrodite Terra and Beta Phoebe Regiones. These rises are the key physiographic elements in a hot spot model of global tectonics including transient plume behavior. Since ER is the first such rise viewed by Magellan and the latitude is very favorable for Pioneer Venus gravity studies, some of the predictions of a time dependent hot spot model are tested. Western ER is defined as the rise including Gula and Sif Mons and central ER as that including Sappho Patera. Superior conjunction prevented Magellan from returning data on eastern ER (Pavlova) during the first mapping cycle. It is concluded that the western and central portions of ER, while part of the same broad topographic rise and tectonic framework, have distinctly different surface ages and gravity signatures. The western rise, including Gula and Sif Mons, is the expression of deep seated uplift with volcanism limited to the individual large shields. The eastern portion has been widely resurfaced more recently by thermal anomalies in the mantle.

  11. Imaging of spatially extended hot spots with coded apertures for intra-operative nuclear medicine applications

    NASA Astrophysics Data System (ADS)

    Kaissas, I.; Papadimitropoulos, C.; Potiriadis, C.; Karafasoulis, K.; Loukas, D.; Lambropoulos, C. P.

    2017-01-01

    Coded aperture imaging transcends planar imaging with conventional collimators in efficiency and Field of View (FOV). We present experimental results for the detection of 141 keV and 122 keV γ-photons emitted by uniformly extended 99mTc and 57Co hot-spots along with simulations of uniformly and normally extended 99mTc hot-spots. These results prove that the method can be used for intra-operative imaging of radio-traced sentinel nodes and thyroid remnants. The study is performed using a setup of two gamma cameras, each consisting of a coded-aperture (or mask) of Modified Uniformly Redundant Array (MURA) of rank 19 positioned on top of a CdTe detector. The detector pixel pitch is 350 μm and its active area is 4.4 × 4.4 cm2, while the mask element size is 1.7 mm. The detectable photon energy ranges from 15 keV up to 200 keV with an energy resolution of 3-4 keV FWHM. Triangulation is exploited to estimate the 3D spatial coordinates of the radioactive spots within the system FOV. Two extended sources, with uniform distributed activity (11 and 24 mm in diameter, respectively), positioned at 16 cm from the system and with 3 cm distance between their centers, can be resolved and localized with accuracy better than 5%. The results indicate that the estimated positions of spatially extended sources lay within their volume size and that neighboring sources, even with a low level of radioactivity, such as 30 MBq, can be clearly distinguished with an acquisition time about 3 seconds.

  12. p110α Hot Spot Mutations E545K and H1047R Exert Metabolic Reprogramming Independently of p110α Kinase Activity.

    PubMed

    Chaudhari, Aditi; Krumlinde, Daniel; Lundqvist, Annika; Akyürek, Levent M; Bandaru, Sashidhar; Skålén, Kristina; Ståhlman, Marcus; Borén, Jan; Wettergren, Yvonne; Ejeskär, Katarina; Rotter Sopasakis, Victoria

    2015-10-01

    The phosphatidylinositol-4,5-bisphosphate 3-kinase (PI3K) catalytic subunit p110α is the most frequently mutated kinase in human cancer, and the hot spot mutations E542K, E545K, and H1047R are the most common mutations in p110α. Very little is known about the metabolic consequences of the hot spot mutations of p110α in vivo. In this study, we used adenoviral gene transfer in mice to investigate the effects of the E545K and H1047R mutations on hepatic and whole-body glucose metabolism. We show that hepatic expression of these hot spot mutations results in rapid hepatic steatosis, paradoxically accompanied by increased glucose tolerance, and marked glycogen accumulation. In contrast, wild-type p110α expression does not lead to hepatic accumulation of lipids or glycogen despite similar degrees of upregulated glycolysis and expression of lipogenic genes. The reprogrammed metabolism of the E545K and H1047R p110α mutants was surprisingly not dependent on altered p110α lipid kinase activity. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  13. A spatial analysis of population dynamics and climate change in Africa: potential vulnerability hot spots emerge where precipitation declines and demographic pressures coincide

    USGS Publications Warehouse

    López-Carr, David; Pricope, Narcisa G.; Aukema, Juliann E.; Jankowska, Marta M.; Funk, Christopher C.; Husak, Gregory J.; Michaelsen, Joel C.

    2014-01-01

    We present an integrative measure of exposure and sensitivity components of vulnerability to climatic and demographic change for the African continent in order to identify “hot spots” of high potential population vulnerability. Getis-Ord Gi* spatial clustering analyses reveal statistically significant locations of spatio-temporal precipitation decline coinciding with high population density and increase. Statistically significant areas are evident, particularly across central, southern, and eastern Africa. The highly populated Lake Victoria basin emerges as a particularly salient hot spot. People located in the regions highlighted in this analysis suffer exceptionally high exposure to negative climate change impacts (as populations increase on lands with decreasing rainfall). Results may help inform further hot spot mapping and related research on demographic vulnerabilities to climate change. Results may also inform more suitable geographical targeting of policy interventions across the continent.

  14. Comparing the composition of the earliest basalts erupted by the Iceland and Afar mantle plumes.

    NASA Astrophysics Data System (ADS)

    Stuart, Finlay M.

    2013-04-01

    The first basalts erupted by mantle plumes are typically generated by mantle melting at temperatures 200-300°C higher than average ambient mantle. This is consistent with the derivation of from a thermal boundary layer at the core-mantle boundary. Mantle plume temperatures decrease with time, likely as large plume heads give way to thin plume conduits. Consequently the early, hot plume basalts are a window into the deep mantle. At it's simplest they provide a test of whether the discrete plume source regions are primordial mantle that have been isolated since soon after Earth accretion, or have substantial contributions from subducted slabs. Here I present new isotopic and trace element determinations of the earliest picritic basalts from the ~30 Ma Afar plume in Ethiopia. They will be compared with similar material from the ~60 Ma proto-Iceland plume (PIP) in an effort to test prevailing models regarding the source of mantle plumes. The extremely primordial nature of the helium in the PIP picrites (3He/4He ~ 50 Ra) contrasts with much lower values of the Ethiopian flood basalt province (~21 Ra). The Iceland plume 3He/4He has decreased (linearly) with time, mirroring the secular cooling of the Iceland mantle plume identified by decreasing MgO and FeO in primary melts. In 60 million years the Iceland plume 3He/4He is still higher than the maximum Afar plume value. The Sr-Nd-Pb isotopic composition of the high 3He/4He Ethiopian flood basalt province picrites are remarkably homogenous (e.g. 87Sr/86Sr = 0.70396-0.70412; 206Pb/204Pb = 18.82-19.01). In comparison the PIP picrites have ranges that span nearly the global range of E-MORB and N-MORB. The Afar and proto-Iceland mantle plumes are clearly not initiated in a single deep mantle domain with the same depletion/enrichment and degassing histories, and the same scale of heterogeneity. This implies that there is more than one plume source region/mechanism that is capable of generating comparable volumes of basalt melt

  15. Cooling off health security hot spots: getting on top of it down under.

    PubMed

    Murray, Kris A; Skerratt, Lee F; Speare, Rick; Ritchie, Scott; Smout, Felicity; Hedlefs, Robert; Lee, Jonathan

    2012-11-01

    Australia is free of many diseases, pests and weeds found elsewhere in the world due to its geographical isolation and relatively good health security practices. However, its health security is under increasing pressure due to a number of ecological, climatic, demographic and behavioural changes occurring globally. North Queensland is a high risk area (a health security hot spot) for Australia, due in part to its connection to neighbouring countries via the Torres Strait and the Indo-Papuan conduit, its high diversity of wildlife reservoirs and its environmental characteristics. Major outbreaks of exotic diseases, pests and weeds in Australia can cost in excess of $1 billion; however, most expenditure on health security is reactive apart from preventive measures undertaken for a few high profile diseases, pests and weeds. Large gains in health security could therefore be made by spending more on pre-emptive approaches to reduce the risk of outbreaks, invasion/spread and establishment, despite these gains being difficult to quantify. Although biosecurity threats may initially have regional impacts (e.g. Hendra virus), a break down in security in health security hot spots can have national and international consequences, as has been seen recently in other regions with the emergence of SARS and pandemic avian influenza. Novel approaches should be driven by building research and management capacity, particularly in the regions where threats arise, a model that is applicable both in Australia and in other regions of the world that value and therefore aim to improve their strategies for maintaining health security. Copyright © 2012 Elsevier Ltd. All rights reserved.

  16. Mantle transition zone structure and upper mantle S velocity variations beneath Ethiopia: Evidence for a broad, deep-seated thermal anomaly

    NASA Astrophysics Data System (ADS)

    Benoit, Margaret H.; Nyblade, Andrew A.; Owens, Thomas J.; Stuart, Graham

    2006-11-01

    Ethiopia has been subjected to widespread Cenozoic volcanism, rifting, and uplift associated with the Afar hot spot. The hot spot tectonism has been attributed to one or more thermal upwellings in the mantle, for example, starting thermal plumes and superplumes. We investigate the origin of the hot spot by imaging the S wave velocity structure of the upper mantle beneath Ethiopia using travel time tomography and by examining relief on transition zone discontinuities using receiver function stacks. The tomographic images reveal an elongated low-velocity region that is wide (>500 km) and extends deep into the upper mantle (>400 km). The anomaly is aligned with the Afar Depression and Main Ethiopian Rift in the uppermost mantle, but its center shifts westward with depth. The 410 km discontinuity is not well imaged, but the 660 km discontinuity is shallower than normal by ˜20-30 km beneath most of Ethiopia, but it is at a normal depth beneath Djibouti and the northwestern edge of the Ethiopian Plateau. The tomographic results combined with a shallow 660 km discontinuity indicate that upper mantle temperatures are elevated by ˜300 K and that the thermal anomaly is broad (>500 km wide) and extends to depths ≥660 km. The dimensions of the thermal anomaly are not consistent with a starting thermal plume but are consistent with a flux of excess heat coming from the lower mantle. Such a broad thermal upwelling could be part of the African Superplume found in the lower mantle beneath southern Africa.

  17. Controlling dynamic SERS hot spots on a monolayer film of Fe3O4@Au nanoparticles by a magnetic field.

    PubMed

    Guo, Qing-Hua; Zhang, Chen-Jie; Wei, Chao; Xu, Min-Min; Yuan, Ya-Xian; Gu, Ren-Ao; Yao, Jian-Lin

    2016-01-05

    A large surface-enhanced Raman scattering (SERS) effect is critically dependent on the gap distance of adjacent nanostructures, i.e., "hot spots". However, the fabrication of dynamically controllable hot spots still remains a remarkable challenge. In the present study, we employed an external magnetic field to dynamically control the interparticle spacing of a two-dimensional monolayer film of Fe3O4@Au nanoparticles at a hexane/water interface. SERS measurements were performed to monitor the expansion and shrinkage of the nanoparticles gaps, which produced an obvious effect on SERS activities. The balance between the electrostatic repulsive force, surface tension, and magnetic attractive force allowed observation of the magnetic-field-responsive SERS effect. Upon introduction of an external magnetic field, a very weak SERS signal appeared initially, indicating weak enhancement due to a monolayer film with large interparticle spacing. The SERS intensity reached maximum after 5s and thereafter remained almost unchanged. The results indicated that the observed variations in SERS intensities were fully reversible after removal of the external magnetic field. The reduction of interparticle spacing in response to a magnetic field resulted in about one order of magnitude of SERS enhancement. The combined use of the monolayer film and external magnetic field could be developed as a strategy to construct hot spots both for practical application of SERS and theoretical simulation of enhancement mechanisms. Copyright © 2015 Elsevier B.V. All rights reserved.

  18. Deletion of exons 3-9 encompassing a mutational hot spot in the DMD gene presents an asymptomatic phenotype, indicating a target region for multiexon skipping therapy.

    PubMed

    Nakamura, Akinori; Fueki, Noboru; Shiba, Naoko; Motoki, Hirohiko; Miyazaki, Daigo; Nishizawa, Hitomi; Echigoya, Yusuke; Yokota, Toshifumi; Aoki, Yoshitsugu; Takeda, Shin'ichi

    2016-07-01

    Few cases of dystrophinopathy show an asymptomatic phenotype with mutations in the 5' (exons 3-7) hot spot in the Duchenne muscular dystrophy (DMD) gene. Our patient showed increased serum creatine kinase levels at 12 years of age. A muscle biopsy at 15 years of age led to a diagnosis of Becker muscular dystrophy. The patient showed a slight decrease in cardiac function at the age of 21 years and was administered a β-blocker, but there was no muscle involvement even at the age of 27 years. A deletion of exons 3-9 encompassing a mutational hot spot in the DMD gene was detected, and dystrophin protein expression was ∼15% that of control level. We propose that in-frame deletion of exons 3-9 may produce a functional protein, and that multiexon skipping therapy targeting these exons may be feasible for severe dystrophic patients with a mutation in the 5' hot spot of the DMD gene.

  19. A kinematic model for the development of the Afar Depression and its paleogeographic implications

    NASA Astrophysics Data System (ADS)

    Redfield, T. F.; Wheeler, W. H.; Often, M.

    2003-11-01

    The Afar Depression is a highly extended region of continental to transitional oceanic crust lying at the junction of the Red Sea, the Gulf of Aden and the Ethiopian rifts. We analyze the evolution of the Afar crust using plate kinematics and published crustal models to constrain the temporal and volumetric evolution of the rift basin. Our reconstruction constrains the regional-scale initial 3D geometry and subsequent extension and is well calibrated at the onset of rifting (˜20 Ma) and from the time of earliest documented sea-floor spreading anomalies (˜6 Ma Red Sea; ˜10 Ma Gulf of Aden). It also suggests the Danakil block is a highly extended body, having undergone between ˜200% and ˜400% stretch. Syn-rift sedimentary and magmatic additions to the crust are taken from the literature. Our analysis reveals a discrepancy: either the base of the crust has not been properly imaged, or a (plume-related?) process has somehow caused bulk removal of crustal material since extension began. Inferring subsidence history from thermal modeling and flexural considerations, we conclude subsidence in Afar was virtually complete by Mid Pliocene time. Our analysis contradicts interpretations of late (post 3 Ma) large (˜2 km) subsidence of the Hadar area near the Ethiopian Plateau, suggesting paleoclimatic data record regional, not local, climate change. Tectonic reconstruction (supported by paleontologic and isotopic data) suggests that a land bridge connected Africa and Arabia, via Danakil, up to the Early to Middle Pliocene. The temporal constraints on land bridge and escarpment morphology constrain Afar paleogeography, climate, and faunal migration routes. These constraints (particularly the development of geographic isolation) are fundamentally important for models evaluating and interpreting biologic evolution in the Afar, including speciation and human origins.

  20. Plate break-up geometry in SE-Afar

    NASA Astrophysics Data System (ADS)

    Geoffroy, Laurent; Le Gall, Bernard; Daoud, Mohamed

    2014-05-01

    New structural data acquired in Djibouti strongly support the view of a magma-rich to magma-poor pair of conjugate margins developed in SE Afar since at least 9 Ma. Our model is illustrated by a crustal-scale transect that emphasizes the role of a two-stage extensional detachment fault system, with opposing senses of motion through time. The geometry and kinematics of this detachment fault pattern are mainly documented from lavas and fault dip data extracted from remote sensing imagery (Landsat ETM+, and corresponding DEM), further calibrated by field observations. Although expressed by opposite fault geometries, the two successive extensional events evidenced here are part of a two-stage continental extensional tear-system associated with the ongoing propagation of the Aden-Tadjoura oceanic axis to the NW. A flip-flop evolution of detachment faults accommodating lithosphere divergence has recently been proposed for the development of the Indian Ocean and continental margins (Sauter et al., 2013). However, the SE Afar evolution further suggests a radical and sudden change in lithosphere behavior during extension, from a long-term and widespread magmatic stage to a syn-sedimentary break-up stage where mantle melting concentrates along the future oceanic axis. Of special interest is the fact that a late and rapid stage of non-magmatic extension led to break-up, whose geometry triggered the location of the break-up axis and earliest oceanic accretion. New structural data acquired in Djibouti strongly support the view of a magma-rich to magma-poor pair of conjugate margins developed in SE Afar since at least 9 Ma. Our model is illustrated by a crustal-scale transect that emphasizes the role of a two-stage extensional detachment fault system, with opposing senses of motion through time. The geometry and kinematics of this detachment fault pattern are mainly documented from lavas and fault dip data extracted from remote sensing imagery (Landsat ETM+, and corresponding

  1. A physically-based Mie–Gruneisen equation of state to determine hot spot temperature distributions

    DOE PAGES

    Kittell, David Erik; Yarrington, Cole Davis

    2016-07-14

    Here, a physically-based form of the Mie–Grüneisen equation of state (EOS) is derived for calculating 1d planar shock temperatures, as well as hot spot temperature distributions from heterogeneous impact simulations. This form utilises a multi-term Einstein oscillator model for specific heat, and is completely algebraic in terms of temperature, volume, an integrating factor, and the cold curve energy. Moreover, any empirical relation for the reference pressure and energy may be substituted into the equations via the use of a generalised reference function. The complete EOS is then applied to calculations of the Hugoniot temperature and simulation of hydrodynamic pore collapsemore » using data for the secondary explosive, hexanitrostilbene (HNS). From these results, it is shown that the choice of EOS is even more significant for determining hot spot temperature distributions than planar shock states. The complete EOS is also compared to an alternative derivation assuming that specific heat is a function of temperature alone, i.e. cv(T). Temperature discrepancies on the order of 100–600 K were observed corresponding to the shock pressures required to initiate HNS (near 10 GPa). Overall, the results of this work will improve confidence in temperature predictions. By adopting this EOS, future work may be able to assign physical meaning to other thermally sensitive constitutive model parameters necessary to predict the shock initiation and detonation of heterogeneous explosives.« less

  2. The radio sources CTA 21 and OF+247: The hot spots of radio galaxies

    NASA Astrophysics Data System (ADS)

    Artyukh, V. S.; Tyul'bashev, S. A.; Chernikov, P. A.

    2013-06-01

    The physical conditions in the radio sources CTA 21 and OF+247 are studied assuming that the low-frequency spectral turnovers are due to synchrotron self-absorption. The physical parameters of the radio sources are estimated using a technique based on a nonuniform synchrotron source model. It is shown that the magnetic-field distributions in the dominant compact components of these radio sources are strongly inhomogeneous. The magnetic fields at the center of the sources are B ˜ 10-1 G, and the fields are two to three orders of magnitude weaker at the periphery. The magnetic field averaged over the compact component is B ˜ 10-3 G, and the density of relativistic electrons is n e ˜ 10-3 cm-3. Assuming that there is equipartition of the energies of the magnetic field and relativistic particles, averaged over the source, < E H > = < E e > ˜ 10-7-10-6 erg cm-3. The energy density of the magnetic field exceeds that of the relativistic electrons at the centers of the radio sources. The derived parameters of CTA 21 and OF+247 are close to those of the hot spots in the radio galaxy Cygnus A. On this basis, it is suggested that CTA 21 and OF+247 are radio galaxies at an early stage of their evolution, when the hot spots (dominant compact radio components) have appeared, and the radio lobes (weak extended components) are still being formed.

  3. Coulomb explosion of “hot spot”

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Oreshkin, V. I., E-mail: oreshkin@ovpe.hcei.tsc.ru; Tomsk Polytechnic University, Tomsk; Oreshkin, E. V.

    The study presented in this paper has shown that the generation of hard x rays and high-energy ions, which are detected in pinch implosion experiments, may be associated with the Coulomb explosion of the hot spot that is formed due to the outflow of the material from the pinch cross point. During the process of material outflow, the temperature of the hot spot plasma increases, and conditions arise for the plasma electrons to become continuously accelerated. The runaway of electrons from the hot spot region results in the buildup of positive space charge in this region followed by a Coulombmore » explosion. The conditions for the hot spot plasma electrons to become continuously accelerated have been revealed, and the estimates have been obtained for the kinetic energy of the ions generated by the Coulomb explosion.« less

  4. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... PM2.5 violations”) must be based on quantitative analysis using the applicable air quality models... either: (i) Quantitative methods that represent reasonable and common professional practice; or (ii) A...) The hot-spot demonstration required by § 93.116 must be based on quantitative analysis methods for the...

  5. Thermal analysis of continuous and patterned multilayer films in the presence of a nanoscale hot spot

    NASA Astrophysics Data System (ADS)

    Juang, Jia-Yang; Zheng, Jinglin

    2016-10-01

    Thermal responses of multilayer films play essential roles in state-of-the-art electronic systems, such as photo/micro-electronic devices, data storage systems, and silicon-on-insulator transistors. In this paper, we focus on the thermal aspects of multilayer films in the presence of a nanoscale hot spot induced by near field laser heating. The problem is set up in the scenario of heat assisted magnetic recording (HAMR), the next-generation technology to overcome the data storage density limit imposed by superparamagnetism. We characterized thermal responses of both continuous and patterned multilayer media films using transient thermal modeling. We observed that material configurations, in particular, the thermal barriers at the material layer interfaces crucially impact the temperature field hence play a key role in determining the hot spot geometry, transient response and power consumption. With a representative generic media model, we further explored the possibility of optimizing thermal performances by designing layers of heat sink and thermal barrier. The modeling approach demonstrates an effective way to characterize thermal behaviors of micro and nano-scale electronic devices with multilayer thin film structures. The insights into the thermal transport scheme will be critical for design and operations of such electronic devices.

  6. SERS Assay for Copper(II) Ions Based on Dual Hot-Spot Model Coupling with MarR Protein: New Cu2+-Specific Biorecognition Element.

    PubMed

    Wang, Yulong; Su, Zhenhe; Wang, Limin; Dong, Jinbo; Xue, Juanjuan; Yu, Jiao; Wang, Yuan; Hua, Xiude; Wang, Minghua; Zhang, Cunzheng; Liu, Fengquan

    2017-06-20

    We have developed a rapid and ultrasensitive surface-enhanced Raman scattering (SERS) assay for Cu 2+ detection using the multiple antibiotic resistance regulator (MarR) as specific bridging molecules in a SERS hot-spot model. In the assay, Cu 2+ induces formation of MarR tetramers, which provide Au nanoparticle (NP)-AuNP bridges, resulting in the formation of SERS hot spots. 4-Mercaptobenzoic acid (4-MBA) was used as a Raman reporter. The addition of Cu 2+ increased the Raman intensity of 4-MBA. Use of a dual hot-spot signal-amplification strategy based on AuNP-AgNP heterodimers combined through antigen-antibody reactions increased the sensitivity of the sensing platform by 50-fold. The proposed method gave a linear response for Cu 2+ detection in the range of 0.5-1000 nM, with a detection limit of 0.18 nM, which is 5 orders of magnitude lower than the U.S. Environmental Protection Agency limit for Cu 2+ in drinking water (20 μM). In addition, all analyses can be completed in less than 15 min. The high sensitivity, high specificity, and rapid detection capacity of the SERS assay therefore provide a combined advantage over current assays.

  7. Computational study of 3-D hot-spot initiation in shocked insensitive high-explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.; Manaa, M. R.; Nichols, A., III; Levesque, G.

    2012-03-01

    High-explosive (HE) material consists of large-sized grains with micron-sized embedded impurities and pores. Under various mechanical/thermal insults, these pores collapse generating hightemperature regions leading to ignition. A hydrodynamic study has been performed to investigate the mechanisms of pore collapse and hot spot initiation in TATB crystals, employing a multiphysics code, ALE3D, coupled to the chemistry module, Cheetah. This computational study includes reactive dynamics. Two-dimensional high-resolution large-scale meso-scale simulations have been performed. The parameter space is systematically studied by considering various shock strengths, pore diameters and multiple pore configurations. Preliminary 3-D simulations are undertaken to quantify the 3-D dynamics.

  8. African hot spot volcanism: small-scale convection in the upper mantle beneath cratons.

    PubMed

    King, S D; Ritsema, J

    2000-11-10

    Numerical models demonstrate that small-scale convection develops in the upper mantle beneath the transition of thick cratonic lithosphere and thin oceanic lithosphere. These models explain the location and geochemical characteristics of intraplate volcanos on the African and South American plates. They also explain the presence of relatively high seismic shear wave velocities (cold downwellings) in the mantle transition zone beneath the western margin of African cratons and the eastern margin of South American cratons. Small-scale, edge-driven convection is an alternative to plumes for explaining intraplate African and South American hot spot volcanism, and small-scale convection is consistent with mantle downwellings beneath the African and South American lithosphere.

  9. Identification of biogeochemical hot spots using time-lapse hydrogeophysics

    NASA Astrophysics Data System (ADS)

    Franz, T. E.; Loecke, T.; Burgin, A.

    2016-12-01

    The identification and monitoring of biogeochemical hot spots and hot moments is difficult using point based sampling techniques and sensors. Without proper monitoring and accounting of water, energy, and trace gas fluxes it is difficult to assess the environmental footprint of land management practices. One key limitation is optimal placement of sensors/chambers that adequately capture the point scale fluxes and thus a reasonable integration to landscape scale flux. In this work we present time-lapse hydrogeophysical imaging at an old agricultural field converted into a wetland mitigation bank near Dayton, Ohio. While the wetland was previously instrumented with a network of soil sensors and surface chambers to capture a suite of state variables and fluxes, we hypothesize that time-lapse hydrogeophysical imaging is an underutilized and critical reconnaissance tool for effective network design and landscape scaling. Here we combine the time-lapse hydrogeophysical imagery with the multivariate statistical technique of Empirical Orthogonal Functions (EOF) in order to isolate the spatial and temporal components of the imagery. Comparisons of soil core information (e.g. soil texture, soil carbon) from around the study site and organized within like spatial zones reveal statistically different mean values of soil properties. Moreover, the like spatial zones can be used to identify a finite number of future sampling locations, evaluation of the placement of existing sensors/chambers, upscale/downscale observations, all of which are desirable techniques for commercial use in precision agriculture. Finally, we note that combining the EOF analysis with continuous monitoring from point sensors or remote sensing products may provide a robust statistical framework for scaling observations through time as well as provide appropriate datasets for use in landscape biogeochemical models.

  10. The Afar-Red Sea-Gulf of Aden volcanic margins system : early syn-rift segmentation and tectono-magmatic evolution

    NASA Astrophysics Data System (ADS)

    Stab, Martin; Leroy, Sylvie; Bellahsen, Nicolas; Pik, Raphaël; Ayalew, Dereje; Yirgu, Gezahegn; Khanbari, Khaled

    2017-04-01

    The Afro-Arabian rift system is characterized by complex interactions between magmatism and rifting, leading to long-term segmentation of the associated continental margins. However, past studies focused on specific rift segments and no attempt has yet been made to reconcile them into a single comprehensive geodynamic model. To address this, we present interpretations of seismic profiles offshore the Eritrea-Yemeni margins in the southern Red Sea and the Yemeni margin in the Gulf of Aden and reassess the regional geodynamic evolution including the new tectonic evolution of the Central Afar Magmatic margin. We point out the role of two major transform zones in structuring the volcanism and faulting of the Red Sea-Afar-Aden margins. We show that those transform zones not only control the present-day rift organization, but were also active since the onset of rifting in Oligocene times. Early syn-rift transform zones control the emplacement and the development of seaward-dipping-reflector wedges immediately after the Continental Flood basalts (30 Ma), and are closely associated with mantle plume melts in the course of the segment extension. The margins segmentation thus appears to reflect the underlying mantle dynamics and thermal anomaly, which have directly influenced the style of rifting (wide vs. narrow rift), in controlling the development of preferential lithospheric thinning and massive transfer of magmas in the crust.

  11. Ciliates in chalk-stream habitats congregate in biodiversity hot spots.

    PubMed

    Bradley, Mark W; Esteban, Genoveva F; Finlay, Bland J

    2010-09-01

    Free-living ciliates are a diverse group of microbial eukaryotes that inhabit aquatic environments. They have a vital role within the 'microbial loop', being consumers of microscopic prey such as bacteria, micro-algae, and flagellates, and representing a link between the microscopic and macroscopic components of aquatic food webs. This investigation describes the ciliate communities of four habitats located in the catchment of the River Frome, the major chalk-stream in southern Britain. The ciliate communities were characterised in terms of community assemblage, species abundance and size classes. The ciliate communities investigated proved to be highly diverse, yielding a total of 114 active species. An additional 15 'cryptic' ciliate species were also uncovered. Heterogeneity in the ciliate communities was evident at multiple spatial scales, revealing hot spots of species richness, both within and between habitats. The ciliate communities of habitats with flowing water were composed of smaller ciliates compared to the still-water habitats examined. Copyright 2010 Elsevier Masson SAS. All rights reserved.

  12. Prediction of binding hot spot residues by using structural and evolutionary parameters

    PubMed Central

    2009-01-01

    In this work, we present a method for predicting hot spot residues by using a set of structural and evolutionary parameters. Unlike previous studies, we use a set of parameters which do not depend on the structure of the protein in complex, so that the predictor can also be used when the interface region is unknown. Despite the fact that no information concerning proteins in complex is used for prediction, the application of the method to a compiled dataset described in the literature achieved a performance of 60.4%, as measured by F-Measure, corresponding to a recall of 78.1% and a precision of 49.5%. This result is higher than those reported by previous studies using the same data set. PMID:21637529

  13. Prediction of binding hot spot residues by using structural and evolutionary parameters.

    PubMed

    Higa, Roberto Hiroshi; Tozzi, Clésio Luis

    2009-07-01

    In this work, we present a method for predicting hot spot residues by using a set of structural and evolutionary parameters. Unlike previous studies, we use a set of parameters which do not depend on the structure of the protein in complex, so that the predictor can also be used when the interface region is unknown. Despite the fact that no information concerning proteins in complex is used for prediction, the application of the method to a compiled dataset described in the literature achieved a performance of 60.4%, as measured by F-Measure, corresponding to a recall of 78.1% and a precision of 49.5%. This result is higher than those reported by previous studies using the same data set.

  14. Magnetic quadrupoles lens for hot spot proton imaging in inertial confinement fusion

    NASA Astrophysics Data System (ADS)

    Teng, J.; Gu, Y. Q.; Chen, J.; Zhu, B.; Zhang, B.; Zhang, T. K.; Tan, F.; Hong, W.; Zhang, B. H.; Wang, X. Q.

    2016-08-01

    Imaging of DD-produced protons from an implosion hot spot region by miniature permanent magnetic quadrupole (PMQ) lens is proposed. Corresponding object-image relation is deduced and an adjust method for this imaging system is discussed. Ideal point-to-point imaging demands a monoenergetic proton source; nevertheless, we proved that the blur of image induced by proton energy spread is a second order effect therefore controllable. A proton imaging system based on miniature PMQ lens is designed for 2.8 MeV DD-protons and the adjust method in case of proton energy shift is proposed. The spatial resolution of this system is better than 10 μm when proton yield is above 109 and the spectra width is within 10%.

  15. Observation of Langmuir Cascade in Single Hot Spot Laser-Plasma Experiments

    NASA Astrophysics Data System (ADS)

    Johnson, R. P.; Montgomery, D. S.; Fernandez, J. C.; Focia, R. J.

    2001-10-01

    We present results from the sixth in a series of experiments designed to investigate the interaction of a single laser hot spot, or speckle, with a preformed, quasi-homogeneous plasma. The experiments were conducted at the Los Alamos National Laboratory (LANL) using the TRIDENT laser. Thomson scattering was used to probe plasma waves driven by stimulated Raman scattering (SRS) and structure was observed in the scattered spectra consistent with multiple steps of the Langmuir decay instability (LDI).(R. J. Focia et al., PSFC Report PSFC/JA-01-17, M.I.T.) The experimental setup is described. The Thomson scattered spectra, resolved in both wavelength versus time and wavelength versus wave vector (effectively ω vs. k), are well-correlated with measurements of the backscattered SRS light and calculations based on linear theory. Parameter regimes are identified in which the LDI cascade exists.

  16. Uranium Bioreduction Rates across Scales: Biogeochemical Hot Moments and Hot Spots during a Biostimulation Experiment at Rifle, Colorado

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bao, Chen; Wu, Hongfei; Li, Li

    2014-09-02

    We aim to understand the scale-dependent evolution of uranium bioreduction during a field experiment at a former uranium mill site near Rifle, Colorado. Acetate was injected to stimulate Fe-reducing bacteria (FeRB) and to immobilize aqueous U(VI) to insoluble U(IV). Bicarbonate was coinjected in half of the domain to mobilize sorbed U(VI). We used reactive transport modeling to integrate hydraulic and geochemical data and to quantify rates at the grid block (0.25 m) and experimental field scale (tens of meters). Although local rates varied by orders of magnitude in conjunction with biostimulation fronts propagating downstream, field-scale rates were dominated by thosemore » orders of magnitude higher rates at a few selected hot spots where Fe(III), U(VI), and FeRB were at their maxima in the vicinity of the injection wells. At particular locations, the hot moments with maximum rates negatively corresponded to their distance from the injection wells. Although bicarbonate injection enhanced local rates near the injection wells by a maximum of 39.4%, its effect at the field scale was limited to a maximum of 10.0%. We propose a rate-versus-measurement-length relationship (log R' = -0.63« less

  17. A mechanism for hot-spot generation in a reactive two-dimensional sheared viscous layer

    NASA Astrophysics Data System (ADS)

    Timms, Robert; Purvis, Richard; Curtis, John P.

    2018-05-01

    A two-dimensional model for the non-uniform melting of a thin sheared viscous layer is developed. An asymptotic solution is presented for both a non-reactive and a reactive material. It is shown that the melt front is linearly stable to small perturbations in the non-reactive case, but becomes linearly unstable upon introduction of an Arrhenius source term to model the chemical reaction. Results demonstrate that non-uniform melting acts as a mechanism to generate hot spots that are found to be sufficient to reduce the time to ignition when compared with the corresponding one-dimensional model of melting.

  18. Zooming in on aquatic denitrification hot spots

    NASA Astrophysics Data System (ADS)

    Schultz, Colin

    2011-06-01

    Inorganic nitrogen is an important resource for marine and aquatic ecosystems, acting as a fertilizer for phytoplankton and aquatic plants. When nitrogen concentrations soar, algae blooms can occur. Subsequently, when the algae blooms die, their decomposition can consume most of the available dissolved oxygen, negatively affecting the ecosystem as a whole. Creeks and streams act as strong controls, regulating downstream nitrogen concentrations, and researchers have been zooming in on hyporheic zones—zones where water flows through the sediment alongside the surface water—as possible hot spots of activity in the nitrogen cycle. Using a stable isotope tracer, Zarnetske et al. tracked the evolution of a nitrogen addition as it flowed through a heavily instrumented gravel bar in Drift Creek, in Oregon. The researchers found that the gravel bar could act as either a source or a sink of inorganic nitrogen, depending on how long it took for the water to make its way through the bar. When the creek water took longer to pass through the hyporheic zone, nitrogen levels were reduced significantly through denitrification, while any water that traveled quickly could have its inorganic nitrogen concentrations increased by nitrification. The authors note that a context-dependent effect of individual hyporheic zones on inorganic nitrogen concentrations could have important implications for attempts to estimate the effects of a watershed on the nitrogen cycle. (Journal of Geophysical Research-Biogeosciences, doi:10.1029/ 2010JG001356, 2011)

  19. Hydrologic indicators of hot spots and hot moments of mercury methylation along river corridors

    NASA Astrophysics Data System (ADS)

    Singer, Michael; Harrison, Lee; Donovan, Patrick; Blum, Joel; Marvin-DiPasquale, Mark

    2016-04-01

    The biogeochemical cycling of metals and other contaminants river-floodplain corridors is controlled by microbial activity is often affected by dynamic redox conditions. Riverine flooding thus has the potential to affect speciation of redox-sensitive metals such as mercury (Hg). Therefore, flow history over a period of decades potentially holds information on past production of bioavailable Hg. We investigate this process within a Northern California river system that has a legacy of industrial-scale 19th century hydraulic gold mining. In the first known application of this methodology, we combine hydraulic modeling, measurements of Hg species in sediment and biota, and first-order calculations to assess the role of river floodplains in producing monomethylmercury (MMHg), which accumulates in local and migratory biota. We identify areas that represent 'hot spots' (frequently inundated areas of floodplains) and 'hot moments' (floodplain areas inundated for consecutive long periods). We show that the probability of MMHg production in each sector of the river system is dependent on the spatial patterns of overbank flow and drainage, which affect its long-term redox history. MMHg bioaccumulation within the aquatic food web may pose a major risk to humans and waterfowl that eat migratory salmonids, which are being encouraged to come up these rivers to spawn, and there appears to be no end to MMHg production under a regime of increasingly common large floods with extended duration. These findings identify river floodplains as periodic, temporary, yet important, loci of biogeochemical transformation in which contaminants may undergo change during limited periods of the historical hydrologic record. We suggest that inundation is the primary driver of MMHg production in river corridors and that the entire flow history must be analyzed in terms of magnitude and frequency of inundation in order to accurately assess biogeochemical risks, rather than merely highlighting the

  20. Professional- Amateur Astronomer Partnerships in Scientific Research: The Re-emergence of Jupiter's 5-Micron Hot Spots

    NASA Astrophysics Data System (ADS)

    Yanamandra-Fisher, P. A.

    2012-12-01

    The night sky, with all its delights and mysteries, enthrall professional and amateur astronomers alike. The discrete data sets acquired by professional astronomers via their approved observing programs at various national facilities are supplemented by the nearly daily observations of the same celestial object by amateur astronomers around the world. The emerging partnerships between professional and dedicated amateur astronomers rely on creating a niche for long timeline of multispectral remote sensing. "Citizen Astronomy" can be thought of as the paradigm shift transforming the nature of observational astronomy. In the past decade, it is the collective observations and their analyses by the ever-increasing global network of amateur astronomers that has discovered interesting phenomena and provided the reference backdrop for observations by ground-based professional astronomers and spacecraft missions. We shall present results from our collaborations to observe the recent global upheaval on Jupiter for the past five years and illustrate the strong synergy between the two groups. Global upheavals on Jupiter involve changes in the albedo of entire axisymmetric regions, lasting several years, with the last two occurring in 1989 and 2006. Against this backdrop of planetary-scale changes, discrete features such as the Great Red Spot (GRS), and other vortices exhibit changes on shorter spatial- and time-scales. One set of features we are currently tracking is the variability of the discrete equatorial 5-μm hot spots, semi-evenly spaced in longitude and confined to a narrow latitude band centered at 6.5°N (southern edge of the North Equatorial Belt, NEB), abundant in Voyager images (1980-1981). Tantalizingly similar patterns were observed in the visible (bright plumes and blue-gray regions), where reflectivity in the red is anti-correlated with 5-μm thermal radiance. During the recent NEB fade (2011 - early 2012), however, these otherwise ubiquitous features were

  1. Silicic central volcanoes as precursors to rift propagation: the Afar case

    NASA Astrophysics Data System (ADS)

    Lahitte, Pierre; Gillot, Pierre-Yves; Courtillot, Vincent

    2003-02-01

    The Afar depression is a triple junction characterised by thinned continental crust, where three rift systems meet (Red Sea, Gulf of Aden and East African Rift). About 100 recent K-Ar ages obtained on Plio-Pleistocene lavas [Lahitte et al., J. Geophys. Res. (2002) in press; Kidane et al., J. Geophys. Res. (2002) in press], complemented by new geomorphological interpretations, allow better understanding of the volcano-tectonic activity linked to rift propagation. In Central Afar, a significant spatial and temporal correlation is observed between the occurrence of silicic central volcanoes and the initiation of the successive phases of on-land propagation of the Red Sea and Aden rifts. Inside the Afar depression, at the scale of both a whole ridge and a small rift segment, silicic lavas are systematically erupted close to the location of a future rift segment and prior to the main extensive phase associated with fissural basaltic activity. Central silicic volcanoes therefore appear to be precursor features, and their locations underline the preferred direction of future rift propagation. Evolved volcanoes (and associated magma chambers) form zones of localised lithospheric weakness, which concentrate stress and guide the development of fractures in which fissural magmatism is next emplaced. Differentiated silicic lavas are erupted first. Then, as extension increases, basaltic magma directly erupts to the surface. This composite style of rifting, with volcanic and tectonic components, is a scaled-down equivalent of the continental break-up process at the largest scale.

  2. Lung Hot Spot Without Corresponding Computed Tomography Abnormality on Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography: Artifactual or Real, Iatrogenic or Pathologic?

    PubMed

    Liu, Yiyan

    Focal lung uptake without corresponding lesions or abnormalities on computed tomography (CT) scan poses a dilemma in the interpretation of fluorodeoxyglucose positron emission tomography/computed tomography (FDG PET/CT). A limited number of case reports have previously suggested an artifactual or iatrogenic nature of the uptake. In the present study, 8 relevant cases were included within a retrospective search of the database. Medical records were reviewed for follow-up radiological and pathologic information. In 7 of 8 cases with focal increased FDG uptake but no corresponding lesions or abnormalities on CT scan, the lung hot spots were artifactual or iatrogenic upon follow-up diagnostic chest CT or repeated PET/CT or both the scans. Microemboli were most likely a potential cause of the pulmonary uptake, with or without partial paravenous injection. One case in the series had a real pulmonary lesion demonstrated on follow-up PET/CT scans and on surgical pathology, although the initial integrated CT and follow-up diagnostic chest CT scans revealed negative findings to demonstrate pulmonary abnormalities corresponding to the hot spot on the PET scan. In conclusion, the finding of a lung hot spot in the absence of anatomical abnormality on FDG PET/CT was most likely artifactual or iatrogenic, but it might also represent a real pulmonary lesion. Nonvisualization of anatomical abnormality could be because of its small size and position directly overlying a segmental vessel. Further image follow-up is necessary and important to clarify the nature of the uptake. Copyright © 2017 Elsevier Inc. All rights reserved.

  3. Upper mantle structure of shear-waves velocities and stratification of anisotropy in the Afar Hotspot region

    NASA Astrophysics Data System (ADS)

    Sicilia, D.; Montagner, J.-P.; Cara, M.; Stutzmann, E.; Debayle, E.; Lépine, J.-C.; Lévêque, J.-J.; Beucler, E.; Sebai, A.; Roult, G.; Ayele, A.; Sholan, J. M.

    2008-12-01

    The Afar area is one of the biggest continental hotspots active since about 30 Ma. It may be the surface expression of a mantle "plume" related to the African Superswell. Central Africa is also characterized by extensive intraplate volcanism. Around the same time (30 Ma), volcanic activity re-started in several regions of the African plate and hotspots such as Darfur, Tibesti, Hoggar and Mount Cameroon, characterized by a significant though modest volcanic production. The interactions of mantle upwelling with asthenosphere, lithosphere and crust remain unclear and seismic anisotropy might help in investigating these complex interactions. We used data from the global seismological permanent FDSN networks (GEOSCOPE, IRIS, MedNet, GEO- FON, etc.), from the temporary PASSCAL experiments in Tanzania and Saudi Arabia and a French deployment of 5 portable broadband stations surrounding the Afar Hotspot. A classical two-step tomographic inversion from surface waves performed in the Horn of Africa with selected Rayleigh wave and Love wave seismograms leads to a 3D-model of both S V velocities and azimuthal anisotropy, as well as radial SH/ SV anisotropy, with a lateral resolution of 500 km. The region is characterized by low shear-wave velocities beneath the Afar Hotspot, the Red Sea, the Gulf of Aden and East of the Tanzania Craton to 400 km depth. High velocities are present in the Eastern Arabia and the Tanzania Craton. The results of this study enable us to rule out a possible feeding of the Central Africa hotspots from the "Afar plume" above 150-200 km. The azimuthal anisotropy displays a complex pattern near the Afar Hotspot. Radial anisotropy, although poorly resolved laterally, exhibits S H slower than S V waves down to about 150 km depth, and a reverse pattern below. Both azimuthal and radial anisotropies show a stratification of anisotropy at depth, corresponding to different physical processes. These results suggest that the Afar hotspot has a different and

  4. Variations in the mantle transition zone beneath the Ethiopian Rift and Afar

    NASA Astrophysics Data System (ADS)

    Cornwell, D. G.; Hetenyi, G.; Blanchard, T.; Stuart, G. W.

    2010-12-01

    We use receiver functions calculated on broadband seismological data across Ethiopia to identify and map 3-D changes in the mantle transition zone (MTZ) thickness beneath the Ethiopian rift, Afar and the uplifted Ethiopian Plateau. The MTZ that divides the upper and lower mantle in the Earth is marked by discontinuities whose position and nature is controlled by local temperature and composition. It is commonly assumed that positive temperature anomalies cause an overall thinning of the MTZ by deepening the mineral phase transition of olivine (α-spinel) to wadsleyite (β-spinel) at around 410 km depth and shallowing the mineral phase transition of ringwoodite (γ-spinel) to magnesiowustite-perovskite at around 660 km depth. Such regions of anomalously hot mantle have been interpreted to extend from the core-mantle boundary (e.g. the African Superplume) to the Earth's surface from global tomographic models. Previous studies in Ethiopia or Afar that invoke receiver functions are mainly restricted to illuminating the MTZ beneath permanent seismological stations and, together with a regional receiver function study, all have found difficulty in imaging the discontinuities. They were unable to provide conclusive evidence for a thinned transition zone and could not constrain lateral changes in MTZ thickness that are required to assess whether the African Superplume intersects the MTZ beneath Ethiopia. We use seismological data from permanent stations as well as from four temporary arrays to compute receiver functions. We perform time-to-depth migration using the common conversion point (CCP) method with a regional velocity model that includes the slow mantle anomalies to estimate the depth-to-discontinuties and produce an MTZ thickness map. The signature of both the 410 and the 660 km discontinuities is clearly identified across ~500x500 km2. The 410 is relatively flat at 444±10 km depth throughout the region. The 660 is more perturbed with steep topographic changes

  5. Wafer hot spot identification through advanced photomask characterization techniques

    NASA Astrophysics Data System (ADS)

    Choi, Yohan; Green, Michael; McMurran, Jeff; Ham, Young; Lin, Howard; Lan, Andy; Yang, Richer; Lung, Mike

    2016-10-01

    As device manufacturers progress through advanced technology nodes, limitations in standard 1-dimensional (1D) mask Critical Dimension (CD) metrics are becoming apparent. Historically, 1D metrics such as Mean to Target (MTT) and CD Uniformity (CDU) have been adequate for end users to evaluate and predict the mask impact on the wafer process. However, the wafer lithographer's process margin is shrinking at advanced nodes to a point that the classical mask CD metrics are no longer adequate to gauge the mask contribution to wafer process error. For example, wafer CDU error at advanced nodes is impacted by mask factors such as 3-dimensional (3D) effects and mask pattern fidelity on subresolution assist features (SRAFs) used in Optical Proximity Correction (OPC) models of ever-increasing complexity. These items are not quantifiable with the 1D metrology techniques of today. Likewise, the mask maker needs advanced characterization methods in order to optimize the mask process to meet the wafer lithographer's needs. These advanced characterization metrics are what is needed to harmonize mask and wafer processes for enhanced wafer hot spot analysis. In this paper, we study advanced mask pattern characterization techniques and their correlation with modeled wafer performance.

  6. Hot spot-mediated non-dissipative and ultrafast plasmon passage.

    PubMed

    Roller, Eva-Maria; Besteiro, Lucas V; Pupp, Claudia; Khorashad, Larousse Khosravi; Govorov, Alexander O; Liedl, Tim

    2017-08-01

    Plasmonic nanoparticles hold great promise as photon handling elements and as channels for coherent transfer of energy and information in future all-optical computing devices.1-5 Coherent energy oscillations between two spatially separated plasmonic entities via a virtual middle state exemplify electron-based population transfer, but their realization requires precise nanoscale positioning of heterogeneous particles.6-10 Here, we show the assembly and optical analysis of a triple particle system consisting of two gold nanoparticles with an inter-spaced silver island. We observe strong plasmonic coupling between the spatially separated gold particles mediated by the connecting silver particle with almost no dissipation of energy. As the excitation energy of the silver island exceeds that of the gold particles, only quasi-occupation of the silver transfer channel is possible. We describe this effect both with exact classical electrodynamic modeling and qualitative quantum-mechanical calculations. We identify the formation of strong hot spots between all particles as the main mechanism for the loss-less coupling and thus coherent ultra-fast energy transfer between the remote partners. Our findings could prove useful for quantum gate operations, but also for classical charge and information transfer processes.

  7. Potential Air Toxics Hot Spots in Truck Terminals and Cabs

    PubMed Central

    Smith, Thomas J.; Davis, Mary E.; Hart, Jaime E.; Blicharz, Andrew; Laden, Francine; Garshick, Eric

    2016-01-01

    INTRODUCTION Hot spots are areas where concentrations of one or more air toxics — organic vapors or particulate matter (PM) — are expected to be elevated. The U.S. Environmental Protection Agency’s (EPA*) screening values for air toxics were used in our definition of hot spots. According to the EPA, a screening value “is used to indicate a concentration of a chemical in the air to which a person could be continually exposed for a lifetime … and which would be unlikely to result in a deleterious effect (either cancer or noncancer health effects)” (U.S. EPA 2006). Our characterization of volatile organic compounds (VOCs; namely 18 hydrocarbons, methyl tert-butyl ether [MTBE], acetone, and aldehydes) was added onto our ongoing National Cancer Institute–funded study of lung cancer and particulate pollutant concentrations (PM with an aerodynamic diameter ≤ 2.5 µm [PM2.5], elemental carbon [EC], and organic carbon [OC]) and source apportionment of the U.S. trucking industry. We focused on three possible hot spots within the trucking terminals: upwind background areas affected by nearby industrial parks; downwind areas affected by upwind and terminal sources; and the loading docks and mechanic shops within terminal as well as the interior of cabs of trucks being driven on city, suburban, and rural streets and on highways. METHODS In Phase 1 of our study, 15 truck terminals across the United States were each visited for five consecutive days. During these site visits, sorbent tubes were used to collect 12-hour integrated samples of hydrocarbons and aldehydes from upwind and downwind fence-line locations as well as inside truck cabs. Meteorologic data and extensive site information were collected with each sample. In Phase 2, repeat visits to six terminals were conducted to test the stability of concentrations across time and judge the representativeness of our previous measurements. During the repeat site visits, the sampling procedure was expanded to

  8. Morphostructural study and type of volcanism of submarine volcanoes over the Pitcairn hot spot in the South Pacific

    NASA Astrophysics Data System (ADS)

    Binard, Nicolas; Hékinian, Roger; Stoffers, Peter

    1992-06-01

    Undersea volcanoes found at about 80 km southeast of the island of Pitcairn, are believed to be the manifestation of a hot-spot activity located near 129°30'W 25°10'S, along the strike of the Mururoa-Gambier-Pitcairn volcanic alignment. Hydrothermal activities and recent volcanic flows were observed on the two largest (20 km in basal diameter) and shallowest (60 m and 450 m depth) volcanoes. More than twenty other smaller volcanic edifices ( < 500 m in height) were mapped during a Seabeam survey covering an area of about 8000 km 2. The edifices from the Pitcairn region are conical with a low degree of flatness (summit/basal diameters ratio <0.25), and consist of fresh alkali-enriched lava flows. The other truncated edifices with a high degree of flatness ( > 0.25) made up of ancient MORB-type tholeiitic rocks are inferred to be inherited from the EPR axial regions. The shallow volcanic activity which occurred on the two largest edifices are classified as: (1) reactive eruptions, with hydromagmatic activities, giving rise to volcanic ejecta, bombs, xenoliths, and ash, and (2) quiet eruptions which formed pillows and/or lobated lavas, and large massive flows. Intrusives (dyke and sill) were observed, cutting through the volcanic ejecta near the summit ( < 500 m depth) of the seamounts. The general structural orientations of the rift zones recognized from the bathymetry of individual volcanoes (N160°-180°, N80°, N30° and N120°) are comparable to those observed in the Society and Austral hot-spot regions. These orientations were inferred as corresponding to the structural discontinuities of the ancient oceanic crust, and to the regional stress field of the Pacific plate. Rock samples from the Pitcairn region consist of alkali-basalts, basanites, trachyandesites, and trachytes which are closer in chemical composition to some of the volcanics from the Society rather than to those from the Austral hot-spot regions.

  9. Assessment of PCBs and exposure risk to infants in breast milk of primiparae and multiparae mothers in an electronic waste hot spot and non-hot spot areas in Ghana.

    PubMed

    Asamoah, Anita; Essumang, David Kofi; Muff, Jens; Kucheryavskiy, Sergey V; Søgaard, Erik Gydesen

    2018-01-15

    The aim of the study was to assess the levels of PCBs in the breast milk of some Ghanaian women at suspected hotspot and relatively non-hotspot areas and to find out if the levels of these PCBs pose any risk to the breastfed infants. A total of 128 individual human breast milk were sampled from both primiparae and multiparae mothers. The levels of PCBs in the milk samples were compared. Some of these mothers (105 individuals) work or reside in and around Agbogbloshie (hot-spot), the largest electric and electronic waste dump and recycling site in Accra, Ghana. Others (23 donor mothers) also reside in and around Kwabenya (non-hotspot) which is a mainly residential area without any industrial activities. Samples were analyzed using GC-MS/MS. The total mean levels and range of Σ 7 PCBs were 3.64ng/glipidwt and ˂LOD-29.20ng/glipidwt, respectively. Mean concentrations from Agbogbloshie (hot-spot area) and Kwabenya (non-hotspot areas) were 4.43ng/glipidwt and 0.03ng/glipidwt, respectively. PCB-28 contributed the highest of 29.5% of the total PCBs in the milk samples, and PCB-101 contributed the lowest of 1.74%. The estimated daily intake of PCBs and total PCBs concentrations in this work were found to be lower as compared to similar studies across the world. The estimated hazard quotient using Health Canada's guidelines threshold limit of 1μg/kgbw/day showed no potential health risk to babies. However, considering minimum tolerable value of 0.03μg/kgbw/day defined by the Agency for Toxic Substances and Disease Registry (ATSDR), the values of some mothers were found to be at the threshold limit. This may indicate a potential health risk to their babies. Mothers with values at the threshold levels of the minimum tolerable limits are those who work or reside in and around the Agbogbloshie e-waste site. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. High-resolution melting analysis of the single nucleotide polymorphism hot-spot region in the rpoB gene as an indicator of reduced susceptibility to rifaximin in Clostridium difficile.

    PubMed

    Pecavar, Verena; Blaschitz, Marion; Hufnagl, Peter; Zeinzinger, Josef; Fiedler, Anita; Allerberger, Franz; Maass, Matthias; Indra, Alexander

    2012-06-01

    Clostridium difficile, a Gram-positive, spore-forming, anaerobic bacterium, is the main causative agent of hospital-acquired diarrhoea worldwide. In addition to metronidazole and vancomycin, rifaximin, a rifamycin derivative, is a promising antibiotic for the treatment of recurring C. difficile infections (CDI). However, exposure of C. difficile to this antibiotic has led to the development of rifaximin-resistance due to point mutations in the β-subunit of the RNA polymerase (rpoB) gene. In the present study, 348 C. difficile strains with known PCR-ribotypes were investigated for respective single nucleotide polymorphisms (SNPs) within the proposed rpoB hot-spot region by using high-resolution melting (HRM) analysis. This method allows the detection of SNPs by comparing the altered melting behaviour of dsDNA with that of wild-type DNA. Discrimination between wild-type and mutant strains was enhanced by creating heteroduplexes by mixing sample DNA with wild-type DNA, leading to characteristic melting curve shapes from samples containing SNPs in the respective rpoB section. In the present study, we were able to identify 16 different rpoB sequence-types (ST) by sequencing analysis of a 325 bp fragment. The 16 PCR STs displayed a total of 24 different SNPs. Fifteen of these 24 SNPs were located within the proposed 151 bp SNP hot-spot region, resulting in 11 different HRM curve profiles (CP). Eleven SNPs (seven of which were within the proposed hot-spot region) led to amino acid substitutions associated with reduced susceptibility to rifaximin and 13 SNPs (eight of which were within the hot-spot region) were synonymous. This investigation clearly demonstrates that HRM analysis of the proposed SNP hot-spot region in the rpoB gene of C. difficile is a fast and cost-effective method for the identification of C. difficile samples with reduced susceptibility to rifaximin and even allows simultaneous SNP subtyping of the respective C. difficile isolates.

  11. Using penumbral imaging to measure micrometer size plasma hot spots in Gbar equation of state experiments on the National Ignition Facility.

    PubMed

    Bachmann, B; Kritcher, A L; Benedetti, L R; Falcone, R W; Glenn, S; Hawreliak, J; Izumi, N; Kraus, D; Landen, O L; Le Pape, S; Ma, T; Pérez, F; Swift, D; Döppner, T

    2014-11-01

    We have developed an experimental platform for absolute equation of state measurements up to Gbar pressures on the National Ignition Facility (NIF) within the Fundamental Science Program. We use a symmetry-tuned hohlraum drive to launch a spherical shock wave into a solid CH sphere. Streaked radiography is the primary diagnostic to measure the density change at the shock front as the pressure increases towards smaller radii. At shock stagnation in the center of the capsule, we observe a short and bright x-ray self emission from high density (∼50 g/cm(3)) plasma at ∼1 keV. Here, we present results obtained with penumbral imaging which has been carried out to characterize the size of the hot spot emission. This allows extending existing NIF diagnostic capabilities for spatial resolution (currently ∼10 μm) at higher sensitivity. At peak emission we find the hot spot radius to be as small as 5.8 +/- 1 μm, corresponding to a convergence ratio of 200.

  12. The Effect of Particle Properties on Hot Particle Spot Fire Ignition

    NASA Astrophysics Data System (ADS)

    Zak, Casey David

    The ignition of natural combustible material by hot metal particles is an important fire ignition pathway by which wildland and wildland-urban-interface spot fires are started. There are numerous cases reported of wild fires started by clashing power-lines or from sparks generated by machines or engines. Similarly there are many cases reported of fires caused by grinding, welding and cutting sparks. Up to this point, research on hot particle spot fire ignition has largely focused on particle generation and transport. A small number of studies have examined what occurs after a hot particle contacts a natural fuel bed, but until recently the process remained poorly understood. This work describes an investigation of the effect of particle size, temperature and thermal properties on the ability of hot particles to cause flaming ignition of cellulosic fuel beds. Both experimental and theoretical approaches are used, with a focus on understanding the physics underlying the ignition process. For the experimental study, spheres of stainless steel, aluminum, brass and copper are heated in a tube furnace and dropped onto a powdered cellulose fuel bed; the occurrence of flaming ignition or lack thereof is visually observed and recorded. This procedure is repeated a large number of times for each metal type, varying particle diameter from 2 to 11 mm and particle temperature between 575 and 1100°C. The results of these experiments are statistically analyzed to find approximate ignition boundaries and identify boundary trends with respect to the particle parameters of interest. Schlieren images recorded during the ignition experiments are also used to more accurately describe the ignition process. Based on these images, a simple theoretical model of hot particle spot fire ignition is developed and used to explore the experimental trends further. The model under-predicts the minimum ignition temperatures required for small spheres, but agrees qualitatively with the experimental

  13. Multiple mantle upwellings through the transition zone beneath the Afar Depression?

    NASA Astrophysics Data System (ADS)

    Hammond, J. O.; Kendall, J. M.; Stuart, G. W.; Thompson, D. A.; Ebinger, C. J.; Keir, D.; Ayele, A.; Goitom, B.; Ogubazghi, G.

    2012-12-01

    Previous seismic studies using regional deployments of sensors in East-Africa show that low seismic velocities underlie Africa, but their resolution is limited to the top 200-300km of the Earth. Thus, the connection between the low velocities in the uppermost mantle and those imaged in global studies in the lower mantle is unclear. We have combined new data from Afar, Ethiopia with 7 other regional experiments and global network stations across Kenya, Ethiopia, Eritrea, Djibouti and Yemen, to produce high-resolution models of upper mantle P- and S-wave velocities to the base of the transition zone. Relative travel time tomographic inversions show that within the transition zone two focussed sharp-sided low velocity regions exist: one beneath the Western Ethiopian plateau outside the rift valley, and the other beneath the Afar depression. Estimates of transition zone thickness suggest that this is unlikely to be an artefact of mantle discontinuity topography as a transition zone of normal thickness underlies the majority of Afar and surrounding regions. However, a low velocity layer is evident directly above the 410 discontinuity, co-incident with some of the lowest seismic velocities suggesting that smearing of a strong low velocity layer of limited depth extent may contribute to the tomographic models in north-east Afar. The combination of seismic constraints suggests that small low temperature (<50K) upwellings may rise from a broader low velocity plume-like feature in the lower mantle. This interpretation is supported by numerical and analogue experiments that suggest the 660km phase change and viscosity jump may impede flow from the lower to upper mantle creating a thermal boundary layer at the base of the transition zone. This allows smaller, secondary upwellings to initiate and rise to the surface. These, combined with possible evidence of melt above the 410 discontinuity can explain the seismic velocity models. Our images of secondary upwellings suggest that

  14. New geodetic measurements in central Afar constraining the Arabia-Somalia-Nubia triple junction kinematics

    NASA Astrophysics Data System (ADS)

    Doubre, C.; Deprez, A.; Masson, F.; Socquet, A.; Lewi, E.; Grandin, R.; Calais, E.; Wright, T. J.; Bendick, R. O.; Pagli, C.; Peltzer, G.; de Chabalier, J. B.; Ibrahim Ahmed, S.

    2014-12-01

    The Afar Depression is an extraordinary submerged laboratory where the crustal mechanisms involved in the active rifting process can be studied. But the crustal movements at the regional scale are complicated by being the locus of the meeting of three divergent plate boundaries: the oceanic spreading ridges of the Red Sea and the Aden Ridge and the intra-continental East-African Rift (EAR). We present here the first GPS measurements conducted in a new network in Central Afar, complementing existing networks in Eritrea, around the Manda-Harraro 2005-2010 active segment, in the Northern part of the EAR and in Djibouti. Even if InSAR data were appropriate for mapping the deformation field, the results are difficult to interpret for analyzing the regional kinematics because of the atmospheric conditions, the lack of complete data catalogue, the acquisition configuration and the small velocity variations. Therefore, our measurements in the new sites are crucial to obtain an accurate velocity field over the whole depression, and focus specifically on the spatial organization of the deformation to characterize the tripe junction. These first results show that a small part of the motion of the Somalia plate with respect to the Nubia plate or the Arabia plate (2-3 mm/yr) occurs south of the Tadjura Gulf and East of the Adda-do segment in Southern Afar. The complex kinematic pattern involves a clockwise rotation of this Southeastern part of the Afar rift and can be related to the significant seismic activity regularly recorded in the region of Jigjiga (northern Somalia-Ethiopia border). The western continuation of the Aden Ridge into Afar extends West of the Asal rift segment and does not reach the young active segment of Manda-Inakir (MI). A slow gradient of velocity is observed across the Dobi Graben and across the large systems of faults between Lake Abhe and the MI rift segment. A striking change of the velocity direction occurs in the region of Assaïta, west of Lake

  15. Ecohydrological interfaces as hot spots of ecosystem processes

    NASA Astrophysics Data System (ADS)

    Krause, Stefan; Lewandowski, Jörg; Grimm, Nancy B.; Hannah, David M.; Pinay, Gilles; McDonald, Karlie; Martí, Eugènia; Argerich, Alba; Pfister, Laurent; Klaus, Julian; Battin, Tom; Larned, Scott T.; Schelker, Jacob; Fleckenstein, Jan; Schmidt, Christian; Rivett, Michael O.; Watts, Glenn; Sabater, Francesc; Sorolla, Albert; Turk, Valentina

    2017-08-01

    The movement of water, matter, organisms, and energy can be altered substantially at ecohydrological interfaces, the dynamic transition zones that often develop within ecotones or boundaries between adjacent ecosystems. Interdisciplinary research over the last two decades has indicated that ecohydrological interfaces are often "hot spots" of ecological, biogeochemical, and hydrological processes and may provide refuge for biota during extreme events. Ecohydrological interfaces can have significant impact on global hydrological and biogeochemical cycles, biodiversity, pollutant removal, and ecosystem resilience to disturbance. The organizational principles (i.e., the drivers and controls) of spatially and temporally variable processes at ecohydrological interfaces are poorly understood and require the integrated analysis of hydrological, biogeochemical, and ecological processes. Our rudimentary understanding of the interactions between different drivers and controls critically limits our ability to predict complex system responses to change. In this paper, we explore similarities and contrasts in the functioning of diverse freshwater ecohydrological interfaces across spatial and temporal scales. We use this comparison to develop an integrated, interdisciplinary framework, including a roadmap for analyzing ecohydrological processes and their interactions in ecosystems. We argue that, in order to fully account for their nonlinear process dynamics, ecohydrological interfaces need to be conceptualized as unique, spatially and temporally dynamic entities, which represents a step change from their current representation as boundary conditions at investigated ecosystems.

  16. Uranium bioreduction rates across scales: biogeochemical hot moments and hot spots during a biostimulation experiment at Rifle, Colorado.

    PubMed

    Bao, Chen; Wu, Hongfei; Li, Li; Newcomer, Darrell; Long, Philip E; Williams, Kenneth H

    2014-09-02

    We aim to understand the scale-dependent evolution of uranium bioreduction during a field experiment at a former uranium mill site near Rifle, Colorado. Acetate was injected to stimulate Fe-reducing bacteria (FeRB) and to immobilize aqueous U(VI) to insoluble U(IV). Bicarbonate was coinjected in half of the domain to mobilize sorbed U(VI). We used reactive transport modeling to integrate hydraulic and geochemical data and to quantify rates at the grid block (0.25 m) and experimental field scale (tens of meters). Although local rates varied by orders of magnitude in conjunction with biostimulation fronts propagating downstream, field-scale rates were dominated by those orders of magnitude higher rates at a few selected hot spots where Fe(III), U(VI), and FeRB were at their maxima in the vicinity of the injection wells. At particular locations, the hot moments with maximum rates negatively corresponded to their distance from the injection wells. Although bicarbonate injection enhanced local rates near the injection wells by a maximum of 39.4%, its effect at the field scale was limited to a maximum of 10.0%. We propose a rate-versus-measurement-length relationship (log R' = -0.63 log L - 2.20, with R' in μmol/mg cell protein/day and L in meters) for orders-of-magnitude estimation of uranium bioreduction rates across scales.

  17. 18F-FDG PET/CT Equivalent of the Hepatic Hot Spot Sign With CT Correlation.

    PubMed

    Jundt, Michael C; Broski, Stephen M; Binkovitz, Larry A

    2018-05-01

    A 43-year-old woman presented with an FDG-avid mediastinal Ewing sarcoma invading and nearly occluding the superior vena cava. Geographic increased FDG uptake in hepatic segment IVA was the only other site of nonphysiologic FDG activity. This focal activity was without an underlying mass, had atypical morphology for a hepatic metastasis, and correlated well with prior CT findings of abnormal segment IVA enhancement resulting from the recruitment of portocaval collaterals. In the correct setting, the F-FDG hepatic hot spot should be considered in the differential of a focal FDG-avid hepatic lesion in segment IVA.

  18. Geostatistical risk estimation at waste disposal sites in the presence of hot spots.

    PubMed

    Komnitsas, Kostas; Modis, Kostas

    2009-05-30

    The present paper aims to estimate risk by using geostatistics at the wider coal mining/waste disposal site of Belkovskaya, Tula region, in Russia. In this area the presence of hot spots causes a spatial trend in the mean value of the random field and a non-Gaussian data distribution. Prior to application of geostatistics, subtraction of trend and appropriate smoothing and transformation of the data into a Gaussian form were carried out; risk maps were then generated for the wider study area in order to assess the probability of exceeding risk thresholds. Finally, the present paper discusses the need for homogenization of soil risk thresholds regarding hazardous elements that will enhance reliability of risk estimation and enable application of appropriate rehabilitation actions in contaminated areas.

  19. Identification of Hot Moments and Hot Spots for Real-Time Adaptive Control of Multi-scale Environmental Sensor Networks

    NASA Astrophysics Data System (ADS)

    Wietsma, T.; Minsker, B. S.

    2012-12-01

    Increased sensor throughput combined with decreasing hardware costs has led to a disruptive growth in data volume. This disruption, popularly termed "the data deluge," has placed new demands for cyberinfrastructure and information technology skills among researchers in many academic fields, including the environmental sciences. Adaptive sampling has been well established as an effective means of improving network resource efficiency (energy, bandwidth) without sacrificing sample set quality relative to traditional uniform sampling. However, using adaptive sampling for the explicit purpose of improving resolution over events -- situations displaying intermittent dynamics and unique hydrogeological signatures -- is relatively new. In this paper, we define hot spots and hot moments in terms of sensor signal activity as measured through discrete Fourier analysis. Following this frequency-based approach, we apply the Nyquist-Shannon sampling theorem, a fundamental contribution from signal processing that led to the field of information theory, for analysis of uni- and multivariate environmental signal data. In the scope of multi-scale environmental sensor networks, we present several sampling control algorithms, derived from the Nyquist-Shannon theorem, that operate at local (field sensor), regional (base station for aggregation of field sensor data), and global (Cloud-based, computationally intensive models) scales. Evaluated over soil moisture data, results indicate significantly greater sample density during precipitation events while reducing overall sample volume. Using these algorithms as indicators rather than control mechanisms, we also discuss opportunities for spatio-temporal modeling as a tool for planning/modifying sensor network deployments. Locally adaptive model based on Nyquist-Shannon sampling theorem Pareto frontiers for local, regional, and global models relative to uniform sampling. Objectives are (1) overall sampling efficiency and (2) sampling

  20. Cortical hot spots and labyrinths: why cortical neuromodulation for episodic migraine with aura should be personalized

    PubMed Central

    Dahlem, Markus A.; Schmidt, Bernd; Bojak, Ingo; Boie, Sebastian; Kneer, Frederike; Hadjikhani, Nouchine; Kurths, Jürgen

    2015-01-01

    Stimulation protocols for medical devices should be rationally designed. For episodic migraine with aura we outline model-based design strategies toward preventive and acute therapies using stereotactic cortical neuromodulation. To this end, we regard a localized spreading depression (SD) wave segment as a central element in migraine pathophysiology. To describe nucleation and propagation features of the SD wave segment, we define the new concepts of cortical hot spots and labyrinths, respectively. In particular, we firstly focus exclusively on curvature-induced dynamical properties by studying a generic reaction-diffusion model of SD on the folded cortical surface. This surface is described with increasing level of details, including finally personalized simulations using patient's magnetic resonance imaging (MRI) scanner readings. At this stage, the only relevant factor that can modulate nucleation and propagation paths is the Gaussian curvature, which has the advantage of being rather readily accessible by MRI. We conclude with discussing further anatomical factors, such as areal, laminar, and cellular heterogeneity, that in addition to and in relation to Gaussian curvature determine the generalized concept of cortical hot spots and labyrinths as target structures for neuromodulation. Our numerical simulations suggest that these target structures are like fingerprints, they are individual features of each migraine sufferer. The goal in the future will be to provide individualized neural tissue simulations. These simulations should predict the clinical data and therefore can also serve as a test bed for exploring stereotactic cortical neuromodulation. PMID:25798103

  1. Seafloor Tectonic Fault Fabric and the Evolution of the Walvis Ridge-Rio Grande Rise Hot Spot Twins in the South Atlantic

    NASA Astrophysics Data System (ADS)

    Sager, W. W.; Engfer, D.; Thoram, S.; Koppers, A. A. P.; Class, C.

    2015-12-01

    Walvis Ridge (WR) and Rio Grande Rise (RGR) are Cretaceous-Cenozoic large igneous provinces (LIPs) formed by the Tristan-Gough hot spot interacting with the Mid-Atlantic Ridge (MAR). Although hot spot-ridge interaction has long been considered a primary factor controlling WR-RGR morphology, details are fuzzy owing to sparse geophysical data. We examined tectonic fabric revealed in satellite altimetry-derived gravity data to infer details about RGR-WR evolution. Plate tectonic reconstructions indicate that the main RGR plateau and large N-S plateau in the eastern WR erupted at the same point at ~90 Ma. Over the next ~8 Myr, these conjunct LIPs formed a "V" shape with a basin in between. Curved fracture zones within the basin imply the two LIPs formed around a microplate. The prominent rift in the middle of RGR formed nearly perpendicular to the RGR-WR intersection, suggesting an extensional microplate boundary. Hot spot eruptions continued at the MAR, emplacing the eastern WR and two main RGR plateaus until ~60 Ma. During this period, the N-S trending Eastern Rio Grande Rise (ERGR) was erupted along the MAR. Both the ERGR and WR formed bathymetric lineaments parallel to seafloor fault fabric and were likely connected. This resulted in WR seamounts with a "tadpole" shape, the head being small to medium seamounts on the WR track and the tails being low, spreading-fabric-parallel ridges extending up to ~150 km northward. Similar, small seamounts are found in the contemporaneous ERGR. Another critical observation is that the WR-RGR formed at a large crustal discontinuity (~700 km at anomaly C33, ~84 Ma) at one or more fracture zone offsets. By late Cenozoic time (anomaly C5, ~10 Ma), the offset was reduced by half while several new fracture zones formed at the junction between RGR and WR. This implies a connection between ridge reorganization and RGR-WR volcanism that may have resulted from the fracture zones becoming oblique to the spreading direction as Euler poles

  2. Structure-selective hot-spot Raman enhancement for direct identification and detection of trace penicilloic acid allergen in penicillin.

    PubMed

    Zhang, Liying; Jin, Yang; Mao, Hui; Zheng, Lei; Zhao, Jiawei; Peng, Yan; Du, Shuhu; Zhang, Zhongping

    2014-08-15

    Trace penicilloic acid allergen frequently leads to various fatal immune responses to many patients, but it is still a challenge to directly discriminate and detect its residue in penicillin by a chemosensing way. Here, we report that silver-coated gold nanoparticles (Au@Ag NPs) exhibit a structure-selective hot-spot Raman enhancement capability for direct identification and detection of trace penicilloic acid in penicillin. It has been demonstrated that penicilloic acid can very easily link Au@Ag NPs together by its two carboxyl groups, locating itself spontaneously at the interparticle of Au@Ag NPs to form strong Raman hot-spot. At the critical concentration inducing the nanoparticle aggregation, Raman-enhanced effect of penicilloic acid is ~60,000 folds higher than that of penicillin. In particular, the selective Raman enhancement to the two carboxyl groups makes the peak of carboxyl group at C6 of penicilloic acid appear as a new Raman signal due to the opening of β-lactam ring of penicillin. The surface-enhanced Raman scattering (SERS) nanoparticle sensor reaches a sensitive limit lower than the prescribed 1.0‰ penicilloic acid residue in penicillin. The novel strategy to examine allergen is more rapid, convenient and inexpensive than the conventional separation-based assay methods. Copyright © 2014 Elsevier B.V. All rights reserved.

  3. In silico-designed novel non-peptidic ABAD LD hot spot mimetics reverse Aβ-induced mitochondrial impairments in vitro.

    PubMed

    Viswanath, Ambily Nath Indu; Kim, TaeHun; Jung, Seo Yun; Lim, Sang Min; Pae, Ae Nim

    2017-12-01

    Present work aimed to introduce non-peptidic ABAD loop D (L D ) hot spot mimetics as ABAD-Aβ inhibitors. A full-length atomistic model of ABAD-Aβ complex was built as a scaffold to launch the lead design and its topology later verified by cross-checking the computational mutagenesis results with that of in vitro data. Thereafter, the interactions of prime Aβ-binding L D residues-Tyr101, Thr108, and Thr110-were translated into specific pharmacophore features and this hypothesis subsequently used as a virtual screen query. ELISA-based screening of 20 hits identified two promising lead candidates, VC15 and VC19 with an IC 50 of 4.4 ± 0.3 and 9.6 ± 0.1 μm, respectively. They productively reversed Aβ-induced mitochondrial dysfunctions such as mitochondrial membrane potential loss (JC-1 assay), toxicity (MTT assay), and ATP reduction (ATP assay) in addition to increased cell viabilities. This is the first reporting of L D hot spot-centric in silico scheme to discover novel compounds with promising ABAD-Aβ inhibitory potential. These chemotypes are proposed for further structural optimization to derive novel Alzheimer's disease (AD) therapeutics. © 2017 John Wiley & Sons A/S.

  4. Xi Per [O7.5 III(n)((f))]: DACs, NRPs and Now Co-rotating Hot Spots with MOST

    NASA Astrophysics Data System (ADS)

    Ramiaramanantsoa, Tahina; Moffat, A.; Chene, A.-N.; Desforges, S.; Henrichs, H.; MOST Science Team

    2013-06-01

    We have used the MOST (Microvariability and Oscillations of Stars) microsatellite to obtain four weeks of contiguous high-precision broadband visual photometry in Nov 2011 along with several simultaneous nights of ground-based medium-resolution high signal-to-noise optical spectroscopic monitoring of the O7.5III star xi Persei. This star is well known from previous work to show prominent DACs (Discrete Absorption Components) on times-scales of about two days from UV spectroscopy and NRP (Non Radial Pulsation) with one (l=3) p-mode oscillation of period 3.5 hours from optical spectroscopy. Our MOST-orbit (101 min) binned photometry fails to reveal any coherent pulsations above the 0.1 mmag 3-sigma noise level for periods of hours, while several prominent Fourier peaks emerge at the 1 mmag level in the two-day period range. These longer-period variations are unlikely due to pulsations; rather we deduce from our simulations based upon a simple spot model that we are seeing the photometric modulation of several co-rotating hot spots on the stellar surface, whose lifetimes vary yet they all rotate at the same (probable) period of 4 days, i.e. the best-estimated stellar rotation period. We are in the process of examining if our new optical spectra at a cadence of ~ 5 minutes and signal-to-noise ~ 150 reveal any periodicities on hour and day timescales. This may be the first reported case of co-rotating hot spots on an O star, with important implications for drivers of the DACs (resulting from CIRs, Corotating Interaction Regions) and possible generation via a subsurface convection zone.

  5. [Analysis of hot spots and trend of molecular pharmacognosy research based on project supported by National Natural Science Foundation of 1995-2014].

    PubMed

    Wang, Jun-Wen; Liu, Yang; Tong, Yuan-Yuan; Yang, Ce; Li, Hai-Yan

    2016-05-01

    This study collected 1995-2014 molecular pharmacognosy study, a total of 595 items, funded by Natural Science Foundation of China (NSFC). TDA and Excel software were used to analyze the data of the projects about general situation, hot spots of research with rank analytic and correlation analytic methods. Supported by NSFC molecular pharmacognosy projects and funding a gradual increase in the number of, the proportion of funds for pharmaceutical research funding tends to be stable; mainly supported by molecular biology methods of genuine medicinal materials, secondary metabolism and Germplasm Resources Research; hot drugs including Radix Salviae Miltiorrhizae, Radix Rehmanniae, Cordyceps sinensis, hot contents including tanshinone biosynthesis, Rehmannia glutinosa continuous cropping obstacle. Copyright© by the Chinese Pharmaceutical Association.

  6. A new model for the development of the active Afar volcanic margin

    NASA Astrophysics Data System (ADS)

    Pik, Raphaël; Stab, Martin; Bellahsen, Nicolas; Leroy, Sylvie

    2016-04-01

    Volcanic passive margins, that represent more than the three quarters of continental margins worldwide, are privileged witnesses of the lithospheric extension processes thatform new oceanic basins. They are characterized by voluminous amounts of underplated, intruded and extruded magmas, under the form of massive lavas prisms (seaward-dipping reflectors, or SDR) during the course of thinning and stretching of the lithosphere, that eventually form the ocean-continent transition. The origin and mechanisms of formation of these objects are still largely debated today. We have focussed our attention in the last few years on the Afar volcanic province which represents an active analogue of such volcanic margins. We explored the structural and temporal relationships that exist between the development of the major thinning and stretching structures and the magmatic production in Central Afar. Conjugate precise fieldwork analysis along with lavas geochronology allowed us to revisit the timing and style of the rift formation, since the early syn-rift period of time in the W-Afar marginal area to present days. Extension is primarily accommodated over a wide area at the surface since the very initial periods of extension (~ 25 Ma) following the emplacement of Oligocene CFBs. We propose in our reconstruction of central Afar margin history that extension has been associated with important volumes of underplated mafic material that compensate crustal thinning. This has been facilitated by major crustal-scale detachments that help localize the thinning and underplating at depth. In line with this 'magmatic wide-rift' mode of extension, we demonstrate that episodic extension steps alternate with more protracted magmatic phases. The production of syn-rift massive flood basalts (~ 4 Ma) occurs after early thinning of both the crust and the lithosphere, which suggests that SDR formation, is controlled by previous tectonic event. We determined how the melting regime evolved in

  7. Identification of the hot-spot areas for sickle cell disease using cord blood screening at a district hospital: an Indian perspective.

    PubMed

    Dixit, Sujata; Sahu, Pushpansu; Kar, Shantanu Kumar; Negi, Sapna

    2015-10-01

    Sickle cell disease (SCD), a genetic disorder often reported late, can be identified early in life, and hot-spot areas may be identified to conduct genetic epidemiology studies. This study was undertaken to estimate prevalence and to identify hot spot area for SCD in Kalahandi district, by screening cord blood of neonates delivered at the district hospital as first-hand information. Kalahandi District Hospital selected for the study is predominated by tribal population with higher prevalence of SCD as compared to other parts of Odisha. Cord blood screening of SCD was carried out on 761 newborn samples of which 13 were screened to be homozygous for SCD. Information on area of parent's residence was also collected. Madanpur Rampur area was found to be with the highest prevalence of SCD (10.52 %) and the gene distribution did not follow Hardy-Weinberg Equation indicating un-natural selection. The approach of conducting neonatal screening in a district hospital for identification of SCD is feasible and appropriate for prioritizing area for the implementation of large-scale screening and planning control measures thereof.

  8. Evolution of Northeast Atlantic Magmatic Continental Margins from an Ethiopian-Afar Perspective

    NASA Astrophysics Data System (ADS)

    England, R. W.; Cornwell, D. G.; Ramsden, A. M.

    2014-12-01

    One of the major problems interpreting the evolution of magmatic continental margins is that the structure which should record the pre-magmatic evolution of the rift and which potentially influences the character of the rifting process is partially or completely obscured by thick basalt lava flows and sills. A limited number of deep reflection seismic profiles acquired with tuned seismic sources have penetrated the basalts and provide an image of the pre-magmatic structure, otherwise the principle data are lower resolution wide-angle/refraction profiles and potential field models which have greater uncertainties associated with them. In order to sidestep the imaging constraints we have examined the Ethiopian - Afar rift system to try to understand the rifting process. The Main Ethiopian rift contains an embryonic magmatic passive margin dominated by faulting at the margins of the rift and en-echelon magmatic zones at the centre. Further north toward Afar the rift becomes in-filled with extensive lava flows fed from fissure systems in the widening rift zone. This rift system provides, along its length, a series of 'snapshots' into the possible tectonic evolution of a magmatic continental margin. Deep seismic profiles crossing the NE Atlantic margins reveal ocean dipping reflector sequences (ODRS) overlying extended crust and lower crustal sill complexes of intruded igneous rock, which extend back beneath the continental margin. The ODRS frequently occur in fault bounded rift structures along the margins. We suggest, by analogy to the observations that can be made in the Ethiopia-Afar rift that these fault bounded basins largely form at the embryonic rift stage and are then partially or completely filled with lavas fed from fissures which are now observed as the ODRS. Also in the seismic profiles we identify volcanic constructs on the ODRS which we interpret as the equivalent of the present day fissure eruptions seen in Afar. The ocean ward dip on the ODRS is

  9. Probing the Hawaiian Hot Spot With New Broadband Ocean Bottom Instruments

    NASA Astrophysics Data System (ADS)

    Laske, Gabi; Collins, John A.; Wolfe, Cecily J.; Solomon, Sean C.; Detrick, Robert S.; Orcutt, John A.; Bercovici, David; Hauri, Erik H.

    2009-10-01

    The Hawaiian hot spot is regarded as the textbook example of the product of a deep-rooted mantle plume [Wilson, 1963; Morgan, 1971]. Its isolated location, far from any plate boundary, should provide an opportunity to test most basic hypotheses on the nature of plume-plate interaction and related magmatism [e.g., Ribe and Christensen, 1999]. Yet the lack of crucial geophysical data has sustained a debate about whether Hawaii's volcanism is plume-related or is instead the consequence of more shallow processes, such as the progressive fracturing of the plate in response to extensional stresses [Turcotte and Oxburgh, 1973]. In the plume model for Hawaii's volcanism, hot material is expected to ascend near vertically within the more viscous surrounding mantle before ponding and spreading laterally beneath the rigid lithosphere. Mantle convection in general, and the fast moving Pacific plate in particular, shear and tilt the rising plume. The plume top is dragged downstream by the plate, and this dragged material may give rise to an elongated bathymetric swell [Davies, 1988; Olson, 1990; Sleep, 1990; Phipps Morgan et al., 1995]. However, identifying the dominant cause of the swell remains elusive, and proposed mechanisms include thermal rejuvenation, dynamic support, compositional buoyancy, and mechanical erosion (see Li et al. [2004] for a summary). There is also considerable debate about the continuity of the plume within the mantle, how discrete islands are formed, and how a deep-rooted plume interacts with the mantle transition zone [e.g., van Keken and Gable, 1995].

  10. Use of Spatial Epidemiology and Hot Spot Analysis to Target Women Eligible for Prenatal Women, Infants, and Children Services

    PubMed Central

    Krawczyk, Christopher; Gradziel, Pat; Geraghty, Estella M.

    2014-01-01

    Objectives. We used a geographic information system and cluster analyses to determine locations in need of enhanced Special Supplemental Nutrition Program for Women, Infants, and Children (WIC) Program services. Methods. We linked documented births in the 2010 California Birth Statistical Master File with the 2010 data from the WIC Integrated Statewide Information System. Analyses focused on the density of pregnant women who were eligible for but not receiving WIC services in California’s 7049 census tracts. We used incremental spatial autocorrelation and hot spot analyses to identify clusters of WIC-eligible nonparticipants. Results. We detected clusters of census tracts with higher-than-expected densities, compared with the state mean density of WIC-eligible nonparticipants, in 21 of 58 (36.2%) California counties (P < .05). In subsequent county-level analyses, we located neighborhood-level clusters of higher-than-expected densities of eligible nonparticipants in Sacramento, San Francisco, Fresno, and Los Angeles Counties (P < .05). Conclusions. Hot spot analyses provided a rigorous and objective approach to determine the locations of statistically significant clusters of WIC-eligible nonparticipants. Results helped inform WIC program and funding decisions, including the opening of new WIC centers, and offered a novel approach for targeting public health services. PMID:24354821

  11. Resolving Hot Spots in the C-Terminal Dimerization Domain that Determine the Stability of the Molecular Chaperone Hsp90

    PubMed Central

    Reimann, Sven; Smits, Sander H. J.; Schmitt, Lutz; Groth, Georg; Gohlke, Holger

    2014-01-01

    Human heat shock protein of 90 kDa (hHsp90) is a homodimer that has an essential role in facilitating malignant transformation at the molecular level. Inhibiting hHsp90 function is a validated approach for treating different types of tumors. Inhibiting the dimerization of hHsp90 via its C-terminal domain (CTD) should provide a novel way to therapeutically interfere with hHsp90 function. Here, we predicted hot spot residues that cluster in the CTD dimerization interface by a structural decomposition of the effective energy of binding computed by the MM-GBSA approach and confirmed these predictions using in silico alanine scanning with DrugScorePPI. Mutation of these residues to alanine caused a significant decrease in the melting temperature according to differential scanning fluorimetry experiments, indicating a reduced stability of the mutant hHsp90 complexes. Size exclusion chromatography and multi-angle light scattering studies demonstrate that the reduced stability of the mutant hHsp90 correlates with a lower complex stoichiometry due to the disruption of the dimerization interface. These results suggest that the identified hot spot residues can be used as a pharmacophoric template for identifying and designing small-molecule inhibitors of hHsp90 dimerization. PMID:24760083

  12. Hot spots based gold nanostar@SiO2@CdSe/ZnS quantum dots complex with strong fluorescence enhancement

    NASA Astrophysics Data System (ADS)

    Shan, Feng; Su, Dan; Li, Wei; Hu, Wei; Zhang, Tong

    2018-02-01

    In this paper, a novel gold nanostar (NS)@SiO2@CdSe/ZnS quantum dots (QDs) complex with plasmon-enhanced fluorescence synthesized using a step-by-step surface linkage method was presented. The gold NS was synthesized by the seed growth method. The synthesized gold NS with the apexes structure has a hot-spot effect due to the strong electric field distributed at its sharp apexes, which leads to a plasmon resonance enhancement. Because the distance between QDs and metal nanostructures can be precisely controlled by this method, the relationship between enhancement and distance was revealed. The thickness of SiO2 shell was also optimized and the optimum distance of about 21 nm was obtained. The highest fluorescence enhancement of 4.8-fold accompanied by a minimum fluorescence lifetime of 2.3 ns were achieved. This strong enhancement comes from the hot spots distributed at the sharp tip of our constructed nanostructure. Through the finite element method, we calculated the field distribution on the surface of NS and found that gold NS with the sharpest apexes exhibited the highest field enhancement, which matches well with our experiment result. This complex shows tremendous potential applications for liquid-dependent biometric imaging systems.

  13. Design and Implementation of a Community Health Worker HIV Treatment and Prevention Intervention in an HIV Hot Spot Fishing Community in Rakai, Uganda.

    PubMed

    Long, Amanda; Mbabali, Ismail; Hutton, Heidi E; Thomas, Alvin G; Bugos, Eva; Mulamba, Jeremiah; Amico, Kathy Rivet; Nalugoda, Fred; Gray, Ronald H; Wawer, Maria J; Nakigozi, Gertrude; Chang, Larry W

    Innovative approaches are needed to increase engagement in HIV treatment and prevention services, particularly in HIV hot spots. Here, we detail our design, training approach, and early implementation experiences of a community-based HIV intervention called "health scouts." The intervention, utilizing a novel, theory-based approach, trained 10 community residents in an HIV hot spot fishing community to use motivational interviewing strategies and a mobile phone-based counseling application. During the first 3 months, 771 residents (median 82/health scout, range 27-160) were counseled. A directly observed Motivational Interviewing Treatment Integrity scale-based evaluation found adequate performance (median score 20/25, range 11-23). The health scout intervention was feasible to implement in a high HIV-prevalence fishing community, and its impact on HIV care outcomes will be evaluated in an ongoing cluster randomized trial. If found to be effective, it may be an important strategy for responding to HIV in high-burden settings.

  14. Global transcriptional analysis of psoriatic skin and blood confirms known disease-associated pathways and highlights novel genomic "hot spots" for differentially expressed genes.

    PubMed

    Coda, Alvin B; Icen, Murat; Smith, Jason R; Sinha, Animesh A

    2012-07-01

    There are major gaps in our knowledge regarding the exact mechanisms and genetic basis of psoriasis. To investigate the pathogenesis of psoriasis, gene expression in 10 skin (5 lesional, 5 nonlesional) and 11 blood (6 psoriatic, 5 nonpsoriatic) samples were examined using Affymetrix HG-U95A microarrays. We detected 535 (425 upregulated, 110 downregulated) DEGs in lesional skin at 1% false discovery rate (FDR). Combining nine microarray studies comparing lesional and nonlesional psoriatic skin, 34.5% of dysregulated genes were overlapped in multiple studies. We further identified 20 skin and 2 blood associated transcriptional "hot spots" at specified genomic locations. At 5% FDR, 11.8% skin and 10.4% blood DEGs in our study mapped to one of the 12 PSORS loci. DEGs that overlap with PSORS loci may offer prioritized targets for downstream genetic fine mapping studies. Novel DEG "hot spots" may provide new targets for defining susceptibility loci in future studies. Copyright © 2012 Elsevier Inc. All rights reserved.

  15. NIMS Views of a Jovian 'Hot Spot'

    NASA Technical Reports Server (NTRS)

    1997-01-01

    These four Galileo/NIMS near-infrared images of a small portion of the equatorial region of Jupiter show a dark clearing of clouds in the meteorologically-active troposphere of Jupiter. This region constitutes a 'hot spot', a nearly-clear area devoid of thick ammonia clouds which allows Jupiter's indigenous heat radiation to shine through at 5 microns (not shown). These features are thought to be areas of downwelling, dry (low ammonia and water humidity) air. The second image from the top, taken at a wavelength sensitive to methane absorption, has muted contrast, showing that a high-level optically-thin haze layer overlies the entire region. All other images, taken over a large range of methane-insensitive wavelengths from 0.76 to 2.74 microns, reveal such 5 micron bright hotspots as actually being dark in reflected sunlight, confirming clearings in the bright reflective surrounding cloud layer and perhaps indicating absorption by clouds and/or gases at relatively deep levels in the atmosphere.

    These images were acquired December 17, 1996 from a distance of 1.43 million kilometers above the cloudtops. The large dark clearing near the middle of the image is approximately 7000 km wide in the east-west direction and 4000 km tall in the north-south direction, about twice the size of the continental U. S. Images shown are at 0.76, 1.61, 1.99, and 2.74 microns, proceeding from top to bottom.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov.

  16. Linewidth dependence of coherent terahertz emission from Bi2Sr2CaCu2O8 intrinsic Josephson junction stacks in the hot-spot regime

    NASA Astrophysics Data System (ADS)

    Li, Mengyue; Yuan, Jie; Kinev, Nickolay; Li, Jun; Gross, Boris; Guénon, Stefan; Ishii, Akira; Hirata, Kazuto; Hatano, Takeshi; Koelle, Dieter; Kleiner, Reinhold; Koshelets, Valery P.; Wang, Huabing; Wu, Peiheng

    2012-08-01

    We report on measurements of the linewidth Δf of terahertz radiation emitted from intrinsic Josephson junction stacks, using a Nb/AlN/NbN integrated receiver for detection. Previous resolution-limited measurements indicated that Δf may be below 1 GHz—much smaller than expected from a purely cavity-induced synchronization. While at low bias we found Δf to be not smaller than ˜500 MHz, at high bias, where a hot spot coexists with regions which are still superconducting, Δf turned out to be as narrow as 23 MHz. We attribute this to the hot spot acting as a synchronizing element. Δf decreases with increasing bath temperature, a behavior reminiscent of motional narrowing in NMR or electron spin resonance (ESR), but hard to explain in standard electrodynamic models of Josephson junctions.

  17. Dynamic fracture and hot-spot modeling in energetic composites

    NASA Astrophysics Data System (ADS)

    Grilli, Nicolò; Duarte, Camilo A.; Koslowski, Marisol

    2018-02-01

    Defects such as cracks, pores, and particle-matrix interface debonding affect the sensitivity of energetic materials by reducing the time-to-ignition and the threshold pressure to initiate an explosion. Frictional sliding of preexisting cracks is considered to be one of the most important causes of localized heating. Therefore, understanding the dynamic fracture of crystalline energetic materials is of extreme importance to assess the reliability and safety of polymer-bonded explosives. Phase field damage model simulations, based on the regularization of the crack surface as a diffuse delta function, are used to describe crack propagation in cyclotetramethylene-tetranitramine crystals embedded in a Sylgard matrix. A thermal transport model that includes heat generation by friction at crack interfaces is coupled to the solution of crack propagation. 2D and 3D dynamic compression simulations are performed with different boundary velocities and initial distributions of cracks and interface defects to understand their effect on crack propagation and heat generation. It is found that, at an impact velocity of 400 m/s, localized damage at the particle-binder interface is of key importance and that the sample reaches temperatures high enough to create a hot-spot that will lead to ignition. At an impact velocity of 10 m/s, preexisting cracks advanced inside the particle, but the increase of temperature will not cause ignition.

  18. Simulation of the radiation from the hot spot of an X-pinch

    NASA Astrophysics Data System (ADS)

    Oreshkin, V. I.; Artyomov, A. P.; Chaikovsky, S. A.; Oreshkin, E. V.; Rousskikh, A. G.

    2017-01-01

    The results of X-pinch experiments performed using a small-sized pulse generator are analyzed. The generator, capable of producing a 200-kA, 180-ns current, was loaded with an X-pinch made of four 35-μm-diameter aluminum wires. The analysis consists of a one-dimensional radiation magnetohydrodynamic simulation of the formation of a hot spot in an X-pinch, taking into account the outflow of material from the neck region. The radiation loss and the ion species composition of the pinch plasma are calculated based on a stationary collisional-radiative model, including balance equations for the populations of individual levels. With this model, good agreement between simulation predictions and experimental data has been achieved: the experimental and the calculated radiation power and pulse duration differ by no more than twofold. It has been shown that the x-ray pulse is formed in the radiative collapse region, near its boundary.

  19. Deep Sequencing Reveals Spatially Distributed Distinct Hot Spot Mutations in DICER1-Related Multinodular Goiter.

    PubMed

    de Kock, Leanne; Bah, Ismaël; Revil, Timothée; Bérubé, Pierre; Wu, Mona K; Sabbaghian, Nelly; Priest, John R; Ragoussis, Jiannis; Foulkes, William D

    2016-10-01

    Nontoxic multinodular goiter (MNG) occurs frequently, but its genetic etiology is not well established. Familial MNG and MNG occurring with ovarian Sertoli-Leydig cell tumor are associated with germline DICER1 mutations. We recently identified second somatic DICER1 ribonuclease (RNase) IIIb mutations in two MNGs. The objective of the study was to investigate the occurrence of somatic DICER1 mutations and mutational clonality in MNG. MNGs from 15 patients (10 with and five without germline DICER1 mutations) were selected based on tissue availability. Core biopsies/scrapings (n = 70) were obtained, sampling areas of follicular hyperplasia, hyperplasia within colloid pools, unremarkable thyroid parenchyma, and areas of thyroid parenchyma, not classified. After capture with a Fluidigm access array, the coding sequence of DICER1 was deep sequenced using DNA from each core/scraping. All germline DICER1-mutated cases were found to harbor at least one RNase III mutation. Specifically, we identified 12 individually distinct DICER1 RNase IIIb hot spot mutations in 32 of the follicular hyperplasia or hyperplasia within colloid pools cores/scrapings. These mutations are predicted to affect the metal-ion binding residues at positions p.Glu1705, p.Asp1709, p.Gly1809, p.Asp1810, and p.Glu1813. Somatic RNase IIIb mutations were identified in the 10 DICER1 germline mutated MNGs as follows: two cases contained one somatic mutation, five cases contained two mutations, and three cases contained three distinct somatic hot spot mutations. No RNase IIIb mutations were identified in the MNGs from individuals without germline DICER1 mutations. This study demonstrates that nodules within MNG occurring in DICER1 syndrome are associated with spatially distributed somatic DICER1 RNase IIIb mutations.

  20. Current deformation in Central Afar and triple junction kinematics deduced from GPS and InSAR measurements

    NASA Astrophysics Data System (ADS)

    Doubre, Cécile; Déprez, Aline; Masson, Frédéric; Socquet, Anne; Lewi, Elias; Grandin, Raphaël; Nercessian, Alexandre; Ulrich, Patrice; De Chabalier, Jean-Bernard; Saad, Ibrahim; Abayazid, Ahmadine; Peltzer, Gilles; Delorme, Arthur; Calais, Eric; Wright, Tim

    2017-02-01

    Kinematics of divergent boundaries and Rift-Rift-Rift junctions are classically studied using long-term geodetic observations. Since significant magma-related displacements are expected, short-term deformation provides important constraints on the crustal mechanisms involved both in active rifting and in transfer of extensional deformation between spreading axes. Using InSAR and GPS data, we analyse the surface deformation in the whole Central Afar region in detail, focusing on both the extensional deformation across the Quaternary magmato-tectonic rift segments, and on the zones of deformation transfer between active segments and spreading axes. The largest deformation occurs across the two recently activated Asal-Ghoubbet (AG) and Manda Hararo-Dabbahu (MH-D) magmato-tectonic segments with very high strain rates, whereas the other Quaternary active segments do not concentrate any large strain, suggesting that these rifts are either sealed during interdyking periods or not mature enough to remain a plate boundary. Outside of these segments, the GPS horizontal velocity field shows a regular gradient following a clockwise rotation of the displacements from the Southeast to the East of Afar, with respect to Nubia. Very few shallow creeping structures can be identified as well in the InSAR data. However, using these data together with the strain rate tensor and the rotations rates deduced from GPS baselines, the present-day strain field over Central Afar is consistent with the main tectonic structures, and therefore with the long-term deformation. We investigate the current kinematics of the triple junction included in our GPS data set by building simple block models. The deformation in Central Afar can be described by adding a central microblock evolving separately from the three surrounding plates. In this model, the northern block boundary corresponds to a deep EW-trending trans-tensional dislocation, locked from the surface to 10-13 km and joining at depth the

  1. Hot spot computational identification: Application to the complex formed between the hen egg white lysozyme (HEL) and the antibody HyHEL-10

    NASA Astrophysics Data System (ADS)

    Moreira, I. S.; Fernandes, P. A.; Ramos, M. J.

    The definition and comprehension of the hot spots in an interface is a subject of primary interest for a variety of fields, including structure-based drug design. Therefore, to achieve an alanine mutagenesis computational approach that is at the same time accurate and predictive, capable of reproducing the experimental mutagenesis values is a major challenge in the computational biochemistry field. Antibody/protein antigen complexes provide one of the greatest models to study protein-protein recognition process because they have three fundamentally features: specificity, high complementary association and a small epitope restricted to the diminutive complementary determining regions (CDR) region, while the remainder of the antibody is largely invariant. Thus, we apply a computational mutational methodological approach to the study of the antigen-antibody complex formed between the hen egg white lysozyme (HEL) and the antibody HyHEL-10. A critical evaluation that focuses essentially on the limitations and advantages between different computational methods for hot spot determination, as well as between experimental and computational methodological approaches, is presented.

  2. Hot luminescence from gold nanoflowers and its application in high-density optical data storage.

    PubMed

    Zheng, Yunbao; Liu, Haiying; Xiang, Jin; Dai, Qiaofeng; Ouyang, Min; Tie, Shaolong; Lan, Sheng

    2017-04-17

    Gold nanoflowers with feature sizes ranging from several tenths to several hundred nanometers were synthesized by using the one-pot method. They were formed by the self-organization of gold nanoparticles of several nanometers and exhibited broad extinction spectra in the near infrared spectral range. Randomly distributed hot spots originating from the strongly localized modes were generated in gold nanoflowers and their appearances exhibited strong dependences on both the polarization and wavelength of the excitation light. Under the excitation of femtosecond laser pulses, such hot spots emitted efficient hot luminescence spanning the visible to near infrared spectral range. Distinct from the hot luminescence of single hot spots formed on rough gold and silver surfaces, the hot luminescence from gold nanoflowers composed of a large number of hot spots exhibited excitation-intensity dependence quite similar to the emission spectrum. It was demonstrated that the polarization- and wavelength-dependent hot luminescence of gold nanoflowers can be utilized to realize optical data storage with high density and low energy.

  3. Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.

    PubMed

    Gurcan, Metin N; Tomaszewski, John; Overton, James A; Doyle, Scott; Ruttenberg, Alan; Smith, Barry

    2017-02-01

    Interoperability across data sets is a key challenge for quantitative histopathological imaging. There is a need for an ontology that can support effective merging of pathological image data with associated clinical and demographic data. To foster organized, cross-disciplinary, information-driven collaborations in the pathological imaging field, we propose to develop an ontology to represent imaging data and methods used in pathological imaging and analysis, and call it Quantitative Histopathological Imaging Ontology - QHIO. We apply QHIO to breast cancer hot-spot detection with the goal of enhancing reliability of detection by promoting the sharing of data between image analysts. Copyright © 2016 Elsevier Inc. All rights reserved.

  4. Anatomy of a Venusian hot spot - Geology, gravity, and mantle dynamics of Eistla Regio

    NASA Technical Reports Server (NTRS)

    Grimm, Robert E.; Phillips, Roger J.

    1992-01-01

    Results of a study of the western and central portions of the Venusian hot spot Eistla Regio are presented. Magellan radar images were mapped to elucidate the general geologic history of the region. Radial fracture systems both on the rises and volcanoes indicate that uplift and associated faulting accompanied volcanic construction. Prominent fracture zones strike WNW to NW, parallel to the long axis of the highlands. The largest of these, Guor Linea, exhibits a progressive deformation history that may include minor clockwise rotation in addition to bulk NNE-SSW extension. Pioneer Venus line-of-sight accelerations were inverted for vertical gravity which, when combined with topography, were used to solve for mass anomalies on the crust-mantle boundary and in the upper levels of the mantle convective system.

  5. Mapping Publication Trends and Identifying Hot Spots of Research on Internet Health Information Seeking Behavior: A Quantitative and Co-Word Biclustering Analysis

    PubMed Central

    Li, Fan; Li, Min; Guan, Peng; Ma, Shuang

    2015-01-01

    Background The Internet has become an established source of health information for people seeking health information. In recent years, research on the health information seeking behavior of Internet users has become an increasingly important scholarly focus. However, there have been no long-term bibliometric studies to date on Internet health information seeking behavior. Objective The purpose of this study was to map publication trends and explore research hot spots of Internet health information seeking behavior. Methods A bibliometric analysis based on PubMed was conducted to investigate the publication trends of research on Internet health information seeking behavior. For the included publications, the annual publication number, the distribution of countries, authors, languages, journals, and annual distribution of highly frequent major MeSH (Medical Subject Headings) terms were determined. Furthermore, co-word biclustering analysis of highly frequent major MeSH terms was utilized to detect the hot spots in this field. Results A total of 533 publications were included. The research output was gradually increasing. There were five authors who published four or more articles individually. A total of 271 included publications (50.8%) were written by authors from the United States, and 516 of the 533 articles (96.8%) were published in English. The eight most active journals published 34.1% (182/533) of the publications on this topic. Ten research hot spots were found: (1) behavior of Internet health information seeking about HIV infection or sexually transmitted diseases, (2) Internet health information seeking behavior of students, (3) behavior of Internet health information seeking via mobile phone and its apps, (4) physicians’ utilization of Internet medical resources, (5) utilization of social media by parents, (6) Internet health information seeking behavior of patients with cancer (mainly breast cancer), (7) trust in or satisfaction with Web-based health

  6. Mapping publication trends and identifying hot spots of research on Internet health information seeking behavior: a quantitative and co-word biclustering analysis.

    PubMed

    Li, Fan; Li, Min; Guan, Peng; Ma, Shuang; Cui, Lei

    2015-03-25

    The Internet has become an established source of health information for people seeking health information. In recent years, research on the health information seeking behavior of Internet users has become an increasingly important scholarly focus. However, there have been no long-term bibliometric studies to date on Internet health information seeking behavior. The purpose of this study was to map publication trends and explore research hot spots of Internet health information seeking behavior. A bibliometric analysis based on PubMed was conducted to investigate the publication trends of research on Internet health information seeking behavior. For the included publications, the annual publication number, the distribution of countries, authors, languages, journals, and annual distribution of highly frequent major MeSH (Medical Subject Headings) terms were determined. Furthermore, co-word biclustering analysis of highly frequent major MeSH terms was utilized to detect the hot spots in this field. A total of 533 publications were included. The research output was gradually increasing. There were five authors who published four or more articles individually. A total of 271 included publications (50.8%) were written by authors from the United States, and 516 of the 533 articles (96.8%) were published in English. The eight most active journals published 34.1% (182/533) of the publications on this topic. Ten research hot spots were found: (1) behavior of Internet health information seeking about HIV infection or sexually transmitted diseases, (2) Internet health information seeking behavior of students, (3) behavior of Internet health information seeking via mobile phone and its apps, (4) physicians' utilization of Internet medical resources, (5) utilization of social media by parents, (6) Internet health information seeking behavior of patients with cancer (mainly breast cancer), (7) trust in or satisfaction with Web-based health information by consumers, (8

  7. Results and analysis of the hot-spot temperature experiment for a cable-in-conduit conductor with thick conduit

    NASA Astrophysics Data System (ADS)

    Sedlak, Kamil; Bruzzone, Pierluigi

    2015-12-01

    In the design of future DEMO fusion reactor a long time constant (∼23 s) is required for an emergency current dump in the toroidal field (TF) coils, e.g. in case of a quench detection. This requirement is driven mainly by imposing a limit on forces on mechanical structures, namely on the vacuum vessel. As a consequence, the superconducting cable-in-conduit conductors (CICC) of the TF coil have to withstand heat dissipation lasting tens of seconds at the section where the quench started. During that time, the heat will be partially absorbed by the (massive) steel conduit and electrical insulation, thus reducing the hot-spot temperature estimated strictly from the enthalpy of the strand bundle. A dedicated experiment has been set up at CRPP to investigate the radial heat propagation and the hot-spot temperature in a CICC with a 10 mm thick steel conduit and a 2 mm thick glass epoxy outer electrical insulation. The medium size, ∅ = 18 mm, NbTi CICC was powered by the operating current of up to 10 kA. The temperature profile was monitored by 10 temperature sensors. The current dump conditions, namely the decay time constant and the quench detection delay, were varied. The experimental results show that the thick conduit significantly contributes to the overall enthalpy balance, and consequently reduces the amount of copper required for the quench protection in superconducting cables for fusion reactors.

  8. Plasmonic Circuit Theory for Multiresonant Light Funneling to a Single Spatial Hot Spot.

    PubMed

    Hughes, Tyler W; Fan, Shanhui

    2016-09-14

    We present a theoretical framework, based on plasmonic circuit models, for generating a multiresonant field intensity enhancement spectrum at a single "hot spot" in a plasmonic device. We introduce a circuit model, consisting of an array of coupled LC resonators, that directs current asymmetrically in the array, and we show that this circuit can funnel energy efficiently from each resonance to a single element. We implement the circuit model in a plasmonic nanostructure consisting of a series of metal bars of differing length, with nearest neighbor metal bars strongly coupled electromagnetically through air gaps. The resulting nanostructure resonantly traps different wavelengths of incident light in separate gap regions, yet it funnels the energy of different resonances to a common location, which is consistent with our circuit model. Our work is important for a number of applications of plasmonic nanoantennas in spectroscopy, such as in single-molecule fluorescence spectroscopy or Raman spectroscopy.

  9. The 3rd ACR in TAL’AFAR: Challenges and Adaptations

    DTIC Science & Technology

    2008-01-08

    raisins, and cucumbers, usually served in the local diet with grilled lamb and unleavened bread. Tal’Afar contains 18 distinctly named neighbor...accordingly, visiting the Joint Readiness Training Center at Ft. Polk, Louisiana, in the fall of 2002 to brush up...less confront an ill- defined insurgency. Featuring Bradley fighting vehicles, Abrams tanks, Apache attack helicopters, and armed-to-the- teeth

  10. On the difficulty to delimit disease risk hot spots

    NASA Astrophysics Data System (ADS)

    Charras-Garrido, M.; Azizi, L.; Forbes, F.; Doyle, S.; Peyrard, N.; Abrial, D.

    2013-06-01

    Representing the health state of a region is a helpful tool to highlight spatial heterogeneity and localize high risk areas. For ease of interpretation and to determine where to apply control procedures, we need to clearly identify and delineate homogeneous regions in terms of disease risk, and in particular disease risk hot spots. However, even if practical purposes require the delineation of different risk classes, such a classification does not correspond to a reality and is thus difficult to estimate. Working with grouped data, a first natural choice is to apply disease mapping models. We apply a usual disease mapping model, producing continuous estimations of the risks that requires a post-processing classification step to obtain clearly delimited risk zones. We also apply a risk partition model that build a classification of the risk levels in a one step procedure. Working with point data, we will focus on the scan statistic clustering method. We illustrate our article with a real example concerning the bovin spongiform encephalopathy (BSE) an animal disease whose zones at risk are well known by the epidemiologists. We show that in this difficult case of a rare disease and a very heterogeneous population, the different methods provide risk zones that are globally coherent. But, related to the dichotomy between the need and the reality, the exact delimitation of the risk zones, as well as the corresponding estimated risks are quite different.

  11. Communally Nesting Migratory Birds Create Ecological Hot-Spots in Tropical Australia.

    PubMed

    Natusch, Daniel J D; Lyons, Jessica A; Brown, Gregory; Shine, Richard

    2016-01-01

    Large numbers of metallic starlings (Aplonis metallica) migrate annually from New Guinea to the rainforests of tropical Australia, where they nest communally in single emergent trees (up to 1,000 birds). These aggregations create dense and species-rich faunal "hot-spots", attracting a diverse assemblage of local consumers that utilise this seasonal resource. The starlings nested primarily in poison-dart trees (Antiaris toxicaria) near the rainforest-woodland boundary. Surveys underneath these colonies revealed that bird-derived nutrients massively increased densities of soil invertebrates and mammals (primarily wild pigs) beneath trees, year-round. Flying invertebrates, nocturnal birds, reptiles, and amphibians congregated beneath the trees when starlings were nesting (the wet-season). Diurnal birds (primarily cockatoos and bush turkeys) aggregated beneath the trees during the dry-season to utilise residual nutrients when the starlings were not nesting. The abundance of several taxa was considerably higher (to > 1000-fold) under colony trees than under nearby trees. The system strikingly resembles utilisation of bird nesting colonies by predators in other parts of the world but this spectacular system has never been described, emphasizing the continuing need for detailed natural-history studies in tropical Australia.

  12. Determination of PCDD/Fs in breast milk of women living in the vicinities of Da Nang Agent Orange hot spot (Vietnam) and estimation of the infant's daily intake.

    PubMed

    Hue, N T M; Nam, V D; Thuong, N V; Huyen, N T; Phuong, N T H; Hung, N X; Tuan, N H; Son, L K; Minh, N H

    2014-09-01

    Seventeen toxic congeners of polychlorinated dibenzo-p-dioxins (PCDDs) and polychlorinated dibenzofurans (PCDFs) were determined in breast milks using the high resolution gas chromatography/high resolution mass spectrometry (HRGC/HRMS) method. Twenty seven breast milk samples were collected from primiparae who have lived over 5 years in wards namely Chinh Gian, An Khe, Khue Trung, and Hoa Thuan Tay which are located near the Da Nang Agent Orange hot spot (the AO/Dioxin hot spot). The samples were then analyzed for PCDD/F residues in order to assess the human exposure to dioxins from the AO/Dioxin hot spot, especially health risk to the breast-fed infants. The average TEQ levels in the four studied cohorts ranged from 8.1 to 26 pg/g lipid, with the highest level up to 51 pg TEQ/g lipid found in the An Khe ward. The TEQ level was correlated with geographical position and ranking in the order of Khue Trung, Hoa Thuan Tay, Chinh Gian and An Khe. The mean estimated PCDD/Fs infant's daily intake in the cohort of Khue Trung, Hoa Thuan Tay, Chinh Gian and An Khe was about 41, 122, 124, and 134 pg TEQ/kg bw/day, respectively, which are much higher than the tolerable daily intake proposed by the World Health Organization (4 pg TEQ/kg bw/day). Copyright © 2014 Elsevier B.V. All rights reserved.

  13. The C-terminus hot spot region helps in the fibril formation of bacteriophage-associated hyaluronate lyase (HylP2)

    PubMed Central

    Shukla, Harish; Singh, Sudhir Kumar; Singh, Amit Kumar; Mitra, Kalyan; Akhtar, Md. Sohail

    2015-01-01

    The bacteriophage encoded hyaluronate lyases (HylP and HylP2) degrade hyaluronan and other glycosaminoglycans. HylP2 forms a functional fibril under acidic conditions in which its N-terminus is proposed to form the fibrillar core, leading to nucleation and acceleration of fibril formation. Here we report the presence of a hot spot region (A144GVVVY149) towards the carboxy terminus of HylP2, essential for the acceleration of fibril formation. The ‘hot spot’ is observed to be inherently mutated for valines (A178AMVMY183) in case of HylP. The N- terminal swapped chimeras between these phage HLs (NHylP2CHylP and NHylPCHylP2) or HylP did not form fibrils at acidic pH. However, seeding of prefibrils of HylP2 recompensed nucleation and led to fibrillation in NHylPCHylP2. The V147A mutation in the ‘hot spot’ region abolished fibril formation in HylP2. The M179V and M181V double mutations in the ‘hot spot’ region of HylP led to fibrillation with the seeding of prefibrils. It appears that fibrillation in HylP2 even though is initiated by the N-terminus, is accelerated by the conserved ‘hot spot’ region in the C-terminus. A collagenous (Gly-X-Y)10 motif in the N-terminus and a mutated ‘hot spot’ region in the C-terminus of HylP affect fibrillar nucleation and acceleration respectively. PMID:26395159

  14. Geochemistry of Woranso-Mille Pliocene basalts from west-central Afar, Ethiopia: Implications for mantle source characteristics and rift evolution

    NASA Astrophysics Data System (ADS)

    Alene, Mulugeta; Hart, William K.; Saylor, Beverly Z.; Deino, Alan; Mertzman, Stanley; Haile-Selassie, Yohannes; Gibert, Luis B.

    2017-06-01

    The Woranso-Mille (WORMIL) area in the west-central Afar, Ethiopia, contains several Pliocene basalt flows, tuffs, and fossiliferous volcaniclastic beds. We present whole-rock major- and trace-element data including REE, and Sr-Nd-Pb isotope ratios from these basalts to characterize the geochemistry, constrain petrogenetic processes, and infer mantle sources. Six basalt groups are distinguished stratigraphically and geochemically within the interval from 3.8 to 3 Ma. The elemental and isotopic data show intra- and inter-group variations derived primarily from source heterogeneity and polybaric crystallization ± crustal inputs. The combined Sr-Nd-Pb isotope data indicate the involvement of three main reservoirs: the Afar plume, depleted mantle, and enriched continental lithosphere (mantle ± crust). Trace element patterns and ratios further indicate the basalts were generated from spinel-dominated shallow melting, consistent with significantly thinned Pliocene lithosphere in western Afar. The on-land continuation of the Aden rift into western Afar during the Pliocene is reexamined in the context of the new geochemistry and age constraints of the WORMIL basalts. The new data reinforce previous interpretations that progressive rifting and transformation of the continental lithosphere to oceanic lithosphere allows for increasing asthenospheric inputs through time as the continental lithosphere is thinned. Accepted trace element values for BHVO-2 are those recently recommended by Jochum et al. (2016) rounded to provide the same significant figures as the data. Ternary model after Schilling et al. (1992); Endmembers from Rooney et al. (2012).

  15. High-density defects on PdAg nanowire networks as catalytic hot spots for efficient dehydrogenation of formic acid and reduction of nitrate.

    PubMed

    Liu, Hu; Yu, Yongsheng; Yang, Weiwei; Lei, Wenjuan; Gao, Manyi; Guo, Shaojun

    2017-07-13

    Controlling the surface defects of nanocrystals is a new way of tuning/boosting their catalytic properties. Herein, we report networked PdAg nanowires (NWs) with high-density defects as catalytic hot spots for efficient catalytic dehydrogenation of formic acid (FA) and catalytic reduction of nitrates. The networked PdAg NWs exhibit composition-dependent catalytic activity for the dehydrogenation reaction of FA without any additive, with Pd 5 Ag 5 NWs exhibiting the highest activity. They also show good durability, reflected by the retention of their initial activity during the dehydrogenation reaction of FA even after five cycles. Their initial TOF is 419 h -1 at 60 °C in water solution, much higher than those of the most Pd-based catalysts with a support. Moreover, they can efficiently reduce nitrates to alleviate nitrate pollution in water (conversion yield >99%). This strategy opens up a new green synthetic technique to design support-free heterogeneous catalysts with high-density defects as catalytic hot spots for efficient dehydrogenation catalysis of FA to meet the requirement of fuel cell applications and catalytic reduction of nitrates in water polluted with nitrates.

  16. Improved detection of Candida sp. fks hot spot mutants by using the method of the CLSI M27-A3 document with the addition of bovine serum albumin.

    PubMed

    Garcia-Effron, Guillermo; Park, Steven; Perlin, David S

    2011-05-01

    Echinocandins are highly bound to serum proteins, altering their antifungal properties. The addition of 50% human serum to the MIC assay improves the identification of echinocandin-resistant Candida spp. harboring fks hot spot mutations. However, this modification cannot readily be applied to the method of the CLSI M27-A3 document due to safety and standardization difficulties. The aim of this study was to evaluate commercial bovine serum albumin (BSA) as a safe and standardized alternative to human serum. A collection of 28 echinocandin-susceptible strains, 10 Candida parapsilosis sensu lato strains (with naturally reduced echinocandin susceptibility), and 40 FKS hot spot mutants was used in this work. When RPMI 1640 was used for susceptibility testing, wild-type strains and fks mutants showed MIC range overlaps (-2, -1, and -3 2-fold-dilution steps separated these populations for anidulafungin, caspofungin, and micafungin, respectively). On the other hand, the addition of BSA to RPMI 1640 differentially increased echinocandin MIC values for these groups of strains, allowing better separation between populations, with no MIC range overlaps for any of the echinocandin drugs tested. Moreover, the use of RPMI-BSA reduced the number of fks hot spot mutant isolates for which MIC values were less than or equal to the upper limit for the wild type (very major errors) from 9, 2, and 7 with RPMI alone to 3, 0, and 3 for anidulafungin, caspofungin, and micafungin, respectively. When RPMI-BSA was used to study the susceptibility of C. parapsilosis sensu lato species to echinocandins, the strains behaved as anidulafungin- and micafungin-resistant isolates (MIC, ≥8 μg/ml). These data support the need for a revision of the CLSI protocol for in vitro testing of echinocandin susceptibility in order to identify all or most of the fks hot spot mutants. Also, caspofungin could be used as a surrogate marker of reduced susceptibility to echinocandins.

  17. Particle accelerators in the hot spots of radio galaxy 3C 445, imaged with the VLT.

    PubMed

    Prieto, M Almudena; Brunetti, Gianfranco; Mack, Karl-Heinz

    2002-10-04

    Hot spots (HSs) are regions of enhanced radio emission produced by supersonic jets at the tip of the radio lobes of powerful radio sources. Obtained with the Very Large Telescope (VLT), images of the HSs in the radio galaxy 3C 445 show bright knots embedded in diffuse optical emission distributed along the post-shock region created by the impact of the jet into the intergalactic medium. The observations reported here confirm that relativistic electrons are accelerated by Fermi-I acceleration processes in HSs. Furthermore, both the diffuse emission tracing the rims of the front shock and the multiple knots demonstrate the presence of additional continuous re-acceleration processes of electrons (Fermi-II).

  18. Ethical hot spots of combined individual and group therapy: applying four ethical systems.

    PubMed

    Brabender, Virginia M; Fallon, April

    2009-01-01

    Abstract Combined therapy presents ethical quandaries that occur in individual psychotherapy and group psychotherapy, and dilemmas specifically associated with their integration. This paper examines two types of ethical frameworks (a classical principle-based framework and a set of context-based frameworks) for addressing the ethical hot spots of combined therapy: self-referral, transfer of information, and termination. The principle-based approach enables the practitioner to see what core values may be served or violated by different courses of action in combined therapy dilemmas. Yet, the therapist is more likely to do justice to the complexity and richness of the combined therapy situation by supplementing a principle analysis with three additional ethical frameworks. These approaches are: virtue ethics, feminist ethics, and casuistry. An analysis of three vignettes illustrates how these contrasting ethical models not only expand the range of features to which the therapist attends but also the array of solutions the therapist generates.

  19. Effects of high shock pressures and pore morphology on hot spot mechanisms in HMX

    NASA Astrophysics Data System (ADS)

    Springer, H. K.; Tarver, C. M.; Bastea, S.

    2017-01-01

    The shock initiation and detonation behavior of heterogeneous solid explosives is governed by its microstructure and reactive properties. New additive manufacturing techniques offer unprecedented control of explosive microstructures previously impossible, enabling us to develop novel explosives with tailored shock sensitivity and detonation properties. Since microstructure-performance relationships are not well established for explosives, there is little material design guidance for these manufacturing techniques. In this study, we explore the effects of high shock pressures (15-38 GPa) with long shock durations and different pore morphologies on hot spot mechanisms in HMX. HMX is chosen as the model material because we have experimental data on many of the chemical-thermal-mechanical properties required for pore collapse simulations. Our simulations are performed using the multi-physics arbitrary Lagrangian Eulerian finite element hydrocode, ALE3D, with Cheetah-based models for the unreacted and the product equation-of-states. We use a temperature-dependent specific heat with the unreacted equation-of-state and a temperature-dependent viscosity model to ensure accurate shock temperatures for subsequent chemistry. The Lindemann Law model is used for shock melting in HMX. In contrast to previous pore collapse studies at lower shock pressures (≤10 GPa) in HMX and shorter post-collapse burning times, our calculations show that shock melting occurs above 15 GPa due to higher bulk heating and a prominent elongated ("jet-like") hot spot region forms at later times. The combination of the elongated, post-collapse hot spot region and the higher bulk heating with increasing pressure dramatically increases the growth rate of reaction. Our calculations show that the reaction rate, dF/dt, increases with increasing shock pressure. We decompose the reaction rate into ignition ((dF/dt)ig) and growth ((dF/dt)gr) phases to better analyze our results. We define the ignition phase

  20. A hot-spot-active magnetic graphene oxide substrate for microRNA detection based on cascaded chemiluminescence resonance energy transfer.

    PubMed

    Bi, Sai; Chen, Min; Jia, Xiaoqiang; Dong, Ying

    2015-02-28

    Herein, a cascaded chemiluminescence resonance energy transfer (C-CRET) process was demonstrated from horseradish peroxidase (HRP)-mimicking DNAzyme-catalyzed luminol-H2O2 to fluorescein and further to graphene oxide (GO) when HRP-mimicking DNAzyme/fluorescein was in close proximity to the GO surface. The proposed C-CRET system was successfully implemented to construct three modes of C-CRET hot-spot-active substrates (modes I, II and III) by covalently immobilizing HRP-mimicking DNAzyme/fluorescein-labeled hairpin DNAs (hot-spot-generation probes) on magnetic GO (MGO), resulting in a signal "off" state due to the quenching of the luminol/H2O2/HRP-mimicking DNAzyme/fluorescein CRET system by GO. Upon the introduction of microRNA-122 (miRNA-122), the targets (mode I) or the new triggers that were generated through a strand displacement reaction (SDR) initiated by miRNA-122 (modes II and III) hybridized with the loop domains of hairpin probes on MGO to form double-stranded (modes I and II) or triplex-stem structures (mode III), causing an "open" configuration of the hairpin probe and a CRET signal "on" state, thus achieving sensitive and selective detection of miRNA-122. More importantly, the substrate exhibited excellent controllability, reversibility and reproducibility through SDR and magnetic separation (modes II and III), especially sequence-independence for hairpin probes in mode III, holding great potential for the development of a versatile platform for optical biosensing.

  1. Concentration of strontium-90 at selected hot spots in Japan.

    PubMed

    Steinhauser, Georg; Schauer, Viktoria; Shozugawa, Katsumi

    2013-01-01

    This study is dedicated to the environmental monitoring of radionuclides released in the course of the Fukushima nuclear accident. The activity concentrations of β(-)-emitting (90)Sr and β(-)/γ-emitting (134)Cs and (137)Cs from several hot spots in Japan were determined in soil and vegetation samples. The (90)Sr contamination levels of the samples were relatively low and did not exceed the Bq⋅g(-1) range. They were up four orders of magnitude lower than the respective (137)Cs levels. This study, therefore, experimentally confirms previous predictions indicating a low release of (90)Sr from the Fukushima reactors, due to its low volatility. The radiocesium contamination could be clearly attributed to the Fukushima nuclear accident via its activity ratio fingerprint ((134)Cs/(137)Cs). Although the correlation between (90)Sr and (137)Cs is relatively weak, the data set suggests an intrinsic coexistence of both radionuclides in the contaminations caused by the Fukushima nuclear accident. This observation is of great importance not only for remediation campaigns but also for the current food monitoring campaigns, which currently rely on the assumption that the activity concentrations of β(-)-emitting (90)Sr (which is relatively laborious to determine) is not higher than 10% of the level of γ-emitting (137)Cs (which can be measured quickly). This assumption could be confirmed for the samples investigated herein.

  2. Global Admittance Estimates of Elastic and Crustal Thickness of Venus: Results from Top, Hot Spot, and Bottom Loading Models

    NASA Technical Reports Server (NTRS)

    Smrekar, S. E.; Anderson, F. S.

    2005-01-01

    We have calculated admittance spectra using the spatio-spectral method [14] for Venus by moving the central location of the spectrum over a 1 grid, create 360x180 admittance spectra. We invert the observed admittance using top-loading (TL), hot spot (HS), and bottom loading (BL) models, resulting in elastic, crustal, and lithospheric thickness estimates (Te, Zc, and Zl) [0]. The result is a global map for interpreting subsurface structure. Estimated values of Te and Zc concur with previous TL local admittance results, but BL estimates indicate larger values than previously suspected.

  3. Seismically imaging the Afar plume

    NASA Astrophysics Data System (ADS)

    Hammond, J. O.; Kendall, J. M.; Bastow, I. D.; Stuart, G. W.; Keir, D.; Ayele, A.; Ogubazghi, G.; Ebinger, C. J.; Belachew, M.

    2011-12-01

    Plume related flood basalt volcanism in Ethiopia has long been cited to have instigated continental breakup in northeast Africa. However, to date seismic images of the mantle beneath the region have not produced conclusive evidence of a plume-like structure. As a result the nature and even existence of a plume in the region and its role in rift initiation and continental rupture are debated. Previous seismic studies using regional deployments of sensors in East-Africa show that low seismic velocities underlie northeast Africa, but their resolution is limited to the top 200-300km of the Earth. Thus, the connection between the low velocities in the uppermost mantle and those imaged in global studies in the lower mantle is unclear. We have combined new data from Afar, Ethiopia with 6 other regional experiments and global network stations across Ethiopia, Eritrea, Djibouti and Yemen, to produce high-resolution models of upper mantle P- and S- wave velocities to the base of the transition zone. Relative travel time tomographic inversions show that the top 100km is dominated by focussed low velocity zones, likely associated with melt in the lithosphere/uppermost asthenosphere. Below these depths a broad SW-NE oriented sheet like upwelling extends down to the top of the transition zone. Within the transition zone two focussed sharp-sided low velocity regions exist: one beneath the Western Ethiopian plateau outside the rift valley, and the other beneath the Afar depression. The nature of the transition zone anomalies suggests that small upwellings may rise from a broader low velocity plume-like feature in the lower mantle. This interpretation is supported by numerical and analogue experiments that suggest the 660km phase change and viscosity jump may impede flow from the lower to upper mantle creating a thermal boundary layer at the base of the transition zone. This allows smaller, secondary upwellings to initiate and rise to the surface. Our images of secondary upwellings

  4. Improved Detection of Candida sp. fks Hot Spot Mutants by Using the Method of the CLSI M27-A3 Document with the Addition of Bovine Serum Albumin▿†

    PubMed Central

    Garcia-Effron, Guillermo; Park, Steven; Perlin, David S.

    2011-01-01

    Echinocandins are highly bound to serum proteins, altering their antifungal properties. The addition of 50% human serum to the MIC assay improves the identification of echinocandin-resistant Candida spp. harboring fks hot spot mutations. However, this modification cannot readily be applied to the method of the CLSI M27-A3 document due to safety and standardization difficulties. The aim of this study was to evaluate commercial bovine serum albumin (BSA) as a safe and standardized alternative to human serum. A collection of 28 echinocandin-susceptible strains, 10 Candida parapsilosis sensu lato strains (with naturally reduced echinocandin susceptibility), and 40 FKS hot spot mutants was used in this work. When RPMI 1640 was used for susceptibility testing, wild-type strains and fks mutants showed MIC range overlaps (−2, −1, and −3 2-fold-dilution steps separated these populations for anidulafungin, caspofungin, and micafungin, respectively). On the other hand, the addition of BSA to RPMI 1640 differentially increased echinocandin MIC values for these groups of strains, allowing better separation between populations, with no MIC range overlaps for any of the echinocandin drugs tested. Moreover, the use of RPMI-BSA reduced the number of fks hot spot mutant isolates for which MIC values were less than or equal to the upper limit for the wild type (very major errors) from 9, 2, and 7 with RPMI alone to 3, 0, and 3 for anidulafungin, caspofungin, and micafungin, respectively. When RPMI-BSA was used to study the susceptibility of C. parapsilosis sensu lato species to echinocandins, the strains behaved as anidulafungin- and micafungin-resistant isolates (MIC, ≥8 μg/ml). These data support the need for a revision of the CLSI protocol for in vitro testing of echinocandin susceptibility in order to identify all or most of the fks hot spot mutants. Also, caspofungin could be used as a surrogate marker of reduced susceptibility to echinocandins. PMID:21383097

  5. Hot spots of wheat yield decline with rising temperatures.

    PubMed

    Asseng, Senthold; Cammarano, Davide; Basso, Bruno; Chung, Uran; Alderman, Phillip D; Sonder, Kai; Reynolds, Matthew; Lobell, David B

    2017-06-01

    Many of the irrigated spring wheat regions in the world are also regions with high poverty. The impacts of temperature increase on wheat yield in regions of high poverty are uncertain. A grain yield-temperature response function combined with a quantification of model uncertainty was constructed using a multimodel ensemble from two key irrigated spring wheat areas (India and Sudan) and applied to all irrigated spring wheat regions in the world. Southern Indian and southern Pakistani wheat-growing regions with large yield reductions from increasing temperatures coincided with high poverty headcounts, indicating these areas as future food security 'hot spots'. The multimodel simulations produced a linear absolute decline of yields with increasing temperature, with uncertainty varying with reference temperature at a location. As a consequence of the linear absolute yield decline, the relative yield reductions are larger in low-yielding environments (e.g., high reference temperature areas in southern India, southern Pakistan and all Sudan wheat-growing regions) and farmers in these regions will be hit hardest by increasing temperatures. However, as absolute yield declines are about the same in low- and high-yielding regions, the contributed deficit to national production caused by increasing temperatures is higher in high-yielding environments (e.g., northern India) because these environments contribute more to national wheat production. Although Sudan could potentially grow more wheat if irrigation is available, grain yields would be low due to high reference temperatures, with future increases in temperature further limiting production. © 2016 John Wiley & Sons Ltd.

  6. A hot-spot-active magnetic graphene oxide substrate for microRNA detection based on cascaded chemiluminescence resonance energy transfer

    NASA Astrophysics Data System (ADS)

    Bi, Sai; Chen, Min; Jia, Xiaoqiang; Dong, Ying

    2015-02-01

    Herein, a cascaded chemiluminescence resonance energy transfer (C-CRET) process was demonstrated from horseradish peroxidase (HRP)-mimicking DNAzyme-catalyzed luminol-H2O2 to fluorescein and further to graphene oxide (GO) when HRP-mimicking DNAzyme/fluorescein was in close proximity to the GO surface. The proposed C-CRET system was successfully implemented to construct three modes of C-CRET hot-spot-active substrates (modes I, II and III) by covalently immobilizing HRP-mimicking DNAzyme/fluorescein-labeled hairpin DNAs (hot-spot-generation probes) on magnetic GO (MGO), resulting in a signal ``off'' state due to the quenching of the luminol/H2O2/HRP-mimicking DNAzyme/fluorescein CRET system by GO. Upon the introduction of microRNA-122 (miRNA-122), the targets (mode I) or the new triggers that were generated through a strand displacement reaction (SDR) initiated by miRNA-122 (modes II and III) hybridized with the loop domains of hairpin probes on MGO to form double-stranded (modes I and II) or triplex-stem structures (mode III), causing an ``open'' configuration of the hairpin probe and a CRET signal ``on'' state, thus achieving sensitive and selective detection of miRNA-122. More importantly, the substrate exhibited excellent controllability, reversibility and reproducibility through SDR and magnetic separation (modes II and III), especially sequence-independence for hairpin probes in mode III, holding great potential for the development of a versatile platform for optical biosensing.Herein, a cascaded chemiluminescence resonance energy transfer (C-CRET) process was demonstrated from horseradish peroxidase (HRP)-mimicking DNAzyme-catalyzed luminol-H2O2 to fluorescein and further to graphene oxide (GO) when HRP-mimicking DNAzyme/fluorescein was in close proximity to the GO surface. The proposed C-CRET system was successfully implemented to construct three modes of C-CRET hot-spot-active substrates (modes I, II and III) by covalently immobilizing HRP-mimicking DNAzyme

  7. The Afar rift zone deformation dynamics retrieved through phase and amplitude SAR data

    NASA Astrophysics Data System (ADS)

    Casu, F.; Pagli, C.; Paglia, L.; Wang, H.; Wright, T. J.; Lanari, R.

    2011-12-01

    The Dabbahu rift segment of the Afar depression has been active since 2005 when a 2.5 km3 dyke intrusion and hundreds of earthquakes marked the onset a rifting episode which continues to date. Since 2003, the Afar depression has been repeatedly imaged by the ENVISAT satellite, generating a large SAR archive which allow us to study the ongoing deformation processes and the dynamics of magma movements. We combine sets of small baseline interferograms through the advanced DInSAR algorithm referred to as Small BAseline Subset (SBAS), and we generate both ground deformation maps and time series along the satellite Line-Of-Sight (LOS), with accuracies on the order of 5 mm. The main limitation of DInSAR applications is that large and rapid deformations, such as those caused by dyke intrusions and eruptions in Afar, cannot be fully measured. The phase information often degrades and some areas of the interferograms are affected by high fringe rates, leading to difficulties in the phase unwrapping, and/or to complete loss of coherence due to significant misregistration errors. This limitation can be overcome by exploiting the SAR image amplitude information instead of the phase, and by calculating the Pixel-Offset (PO) field of a given SAR image pair, for both range and azimuth directions. Moreover, after computing the POs for each image pair, it is possible to combine them, following the same rationale of the SBAS technique, to finally retrieve the offset-based deformation time series. Such technique, named PO-SBAS, permits to retrieve the deformation field in areas affected by very large displacements at an accuracy that, for ENVISAT data, correspond to 30cm and 15 cm for the range and azimuth, respectively. In this work, we study the Afar rift region deformations by using both the phase and amplitude information of several sets of SAR images acquired from ascending and descending ENVISAT tracks. In particular, we use the phase information to construct dense and accurate

  8. Discovery of multiple interacting partners of gankyrin, a proteasomal chaperone and an oncoprotein--evidence for a common hot spot site at the interface and its functional relevance.

    PubMed

    Nanaware, Padma P; Ramteke, Manoj P; Somavarapu, Arun K; Venkatraman, Prasanna

    2014-07-01

    Gankyrin, a non-ATPase component of the proteasome and a chaperone of proteasome assembly, is also an oncoprotein. Gankyrin regulates a variety of oncogenic signaling pathways in cancer cells and accelerates degradation of tumor suppressor proteins p53 and Rb. Therefore gankyrin may be a unique hub integrating signaling networks with the degradation pathway. To identify new interactions that may be crucial in consolidating its role as an oncogenic hub, crystal structure of gankyrin-proteasome ATPase complex was used to predict novel interacting partners. EEVD, a four amino acid linear sequence seems a hot spot site at this interface. By searching for EEVD in exposed regions of human proteins in PDB database, we predicted 34 novel interactions. Eight proteins were tested and seven of them were found to interact with gankyrin. Affinity of four interactions is high enough for endogenous detection. Others require gankyrin overexpression in HEK 293 cells or occur endogenously in breast cancer cell line- MDA-MB-435, reflecting lower affinity or presence of a deregulated network. Mutagenesis and peptide inhibition confirm that EEVD is the common hot spot site at these interfaces and therefore a potential polypharmacological drug target. In MDA-MB-231 cells in which the endogenous CLIC1 is silenced, trans-expression of Wt protein (CLIC1_EEVD) and not the hot spot site mutant (CLIC1_AAVA) resulted in significant rescue of the migratory potential. Our approach can be extended to identify novel functionally relevant protein-protein interactions, in expansion of oncogenic networks and in identifying potential therapeutic targets. © 2013 Wiley Periodicals, Inc.

  9. Receiver function imaging of the onset of melting, implications for volcanism beneath the Afar Rift in contrast to hotspot environments

    NASA Astrophysics Data System (ADS)

    Rychert, C. A.; Harmon, N.; Hammond, J. O.; Laske, G.; Kendall, J.; Ebinger, C. J.; Shearer, P. M.; Bastow, I. D.; Keir, D.; Ayele, A.; Belachew, M.; Stuart, G. W.

    2012-12-01

    Heating, melting, and stretching destroy continents at volcanic rifts. Mantle plumes are often invoked to thermally weaken the continental lithosphere and accommodate rifting through the influx of magma. However the relative effects of mechanical stretching vs. melt infiltration and weakening are not well quantified during the evolution of rifting. S-to-p (Sp) imaging beneath the Afar Rift and hotspot regions such as Hawaii provides additional constraints. We use data from the Ethiopia/Kenya Broadband Seismic Experiment (EKBSE), the Ethiopia Afar Geophysical Lithospheric Experiment (EAGLE), a new UK/US led deployment of 46 stations in the Afar depression and surrounding area, and the PLUME experiment. We use two methodologies to investigate structure and locate robust features: 1) binning by conversion point and then simultaneous deconvolution in the frequency domain, and 2) extended multitaper followed by migration and stacking. We image a lithosphere-asthenosphere boundary at ~75 km beneath the flank of the Afar Rift vs. its complete absence beneath the rift, where the mantle lithosphere has been totally destroyed. Instead a strong velocity increase with depth at ~75 km depth matches geodynamic model predictions for a drop in melt percentage at the onset of decompression melting. The shallow depth of the onset of melting is consistent with a mantle potential temperature = 1350 - 1400°C, i.e., typical for adiabatic decompression melting. Therefore although a plume initially destroyed the mantle lithosphere, its influence directly beneath Afar today is minimal. Volcanism continues via adiabatic decompression melting assisted by strong melt buoyancy effects. This contrasts with a similar feature at much deeper depth, ~150 km, just west of Hawaii, where a deep thermal plume is hypothesized to impinge on the lithosphere. Improved high resolution imaging of rifting, ridges, and hotspots in a variety of stages and tectonic settings will increase constraints on the

  10. Extragalactic Ultra-High Energy Cosmic-Rays - Part One - Contribution from Hot Spots in Fr-II Radio Galaxies

    NASA Astrophysics Data System (ADS)

    Rachen, J. P.; Biermann, P. L.

    1993-05-01

    The hot spots of Fanaroff-Riley class II radio galaxies, considered as working surfaces of highly collimated plasma jets, are proposed to be the dominant sources of the cosmic rays at energies above 1 EeV^a^. We apply the model of first order Fermi acceleration at strong, nonrelativistic shock waves to the hot spot region. The strength of the model has been demonstrated by Biermann & Strittmatter (1987) and by Meisenheimer et al. (1989), who explain their radio-to optical spectra and infer the physical conditions of the radiating plasma. Using synchrotron radiating electrons as a trace, we can calculate the spectrum and the maximum energy of protons accelerated under the same conditions. For simplicity, we disregard heavy nuclei, but their probable role is discussed. The normalization of proton flux injected in extragalactic space is performed by using estimates from Rawlings & Saunders (1991) for the total energy stored in relativistic particles inside the jets and radio galaxy evolution models given by Peacock (1985). We calculate the spectral modifications due to interactions of the protons with the microwave background photons in an evolving universe, following Berezinsky & Grigor'eva (1988). Constraints on the extragalactic magnetic field can be imposed, since it must permit an almost homogeneous filling of the universe with energetic protons. The observed ultra-high energy cosmic ray spectrum is reproduced in slope and flux, limited at high energies by the Greisen-cutoff at about 80 EeV. The requirements on the content of relativistic protons in jets and the constraints to the extragalactic magnetic field are consistent with common estimates. The data beyond the Greisen cutoff for protons may be explained by including heavy nuclei in our model, since they can propagate over cosmological distances up to more than 100 EeV.

  11. Increase in earthquake swarm activity in the southern Red Sea, Afar and Gulf of Aden

    NASA Astrophysics Data System (ADS)

    Ruch, Joël; Keir, Derek; Ogubazghi, Ghebrebrhan; di Giacomo, Domenico; Ladron Viltres, Renier; Jónsson, Sigurjón

    2017-04-01

    Rifting events periodically occur at divergent plate boundaries, consisting of magmatic intrusions, seismic swarms, surface faulting and in some cases volcanic eruptions. While earthquake swarms also occur at other types of plate boundaries, the swarms that have been observed in inland rift zones (e.g., in Afar and Iceland) and in a few offshore cases show an unambiguous relation with magmatic intrusions. These swarms typically last for a few days to a few weeks, lack a clear mainshock-aftershock decay pattern. Here we present a new study on earthquake swarms in the southern Red Sea, Afar and Gulf of Aden. We provide the first earthquake swarm catalogue for the region, which we compiled by integrating reexamined global and local earthquake catalogues with historical observations from 1960 to 2016. We find that in several cases in all the three areas, swarms have been re-occurring at the same locations every few decades (e.g., in the Bada area in Eritrea and Port Sudan region in the southern Red Sea in 1967 and 1993, and in the western Gulf of Aden in 1979, 1997 and 2010-2012). This suggests the existence of active spreading centers that are more active than previously thought. The swarms show different families of earthquake magnitudes, with clusters of Mw4 and Mw5 events (southern Red Sea and Aden) and occasional larger than Mw6 events, primarily in the southern Afar region (the Serdo and Dobi areas). Of the three areas, Gulf of Aden shows the highest swarm activity, followed by the Afar area and the southern Red Sea. Despite seeing the least amount of activity and lower magnitudes, the southern Red Sea has experienced multiple earthquake swarms and three volcanic eruptions (two of which resulted in new volcanic islands) during the past 10 years. We show that the three areas have been subject to an almost simultaneous increase of earthquake swarm activity during the last 10 years. This period (2005-2014) was much more active compared to the preceding decades (1960

  12. Low lower crustal velocity across Ethiopia: Is the Main Ethiopian Rift a narrow rift in a hot craton?

    NASA Astrophysics Data System (ADS)

    Keranen, Katie M.; Klemperer, Simon L.; Julia, Jordi; Lawrence, Jesse F.; Nyblade, Andy A.

    2009-05-01

    The Main Ethiopian Rift (MER) is a classic narrow rift that developed in hot, weak lithosphere, not in the initially cold, thick, and strong lithosphere that would be predicted by common models of rift mode formation. Our new 1-D seismic velocity profiles from Rayleigh wave/receiver function joint inversion across the MER and the Ethiopian Plateau indicate that hot lower crust and upper mantle are present throughout the broad region affected by Oligocene flood basalt volcanism, including both the present rift and the adjacent Ethiopian Plateau hundreds of kilometers from the rift valley. The region of hot lithosphere closely corresponds to the region of flood basalt volcanism, and we interpret that the volcanism and thermal perturbation were jointly caused by impingement of the Afar plume head. Across the affected region, Vs is 3.6-3.8 km/s in the lowermost crust and ≤4.3 km/s in the uppermost mantle, both ˜0.3 km/s lower than in the eastern and western branches of the East African Rift System to the south. We interpret the low Vs in the lower crust and upper mantle as indicative of hot lithosphere with partial melt. Our results lead to a hybrid rift mode, in which the brittle upper crust has developed as a narrow rift along the Neoproterozoic suture between East and West Gondwana, while at depth lithospheric deformation is distributed over the broad region (˜400 km wide) thermally perturbed by the broad thermal upwelling associated with the Afar plume head. Development of both the East African Rift System to the south (in cold, strong lithosphere) and the MER to the north (in hot, weak lithosphere) as narrow rifts, despite their vastly different initial thermal states and depth-integrated lithospheric strength, indicates that common models of rift mode formation that focus only on temperature, thickness, and vertical strength profiles do not apply to these classic continental rifts. Instead, inherited structure and associated lithospheric weaknesses are the

  13. Low lower crustal velocity across Ethiopia: Is the Main Ethiopian Rift a narrow rift in a hot craton?

    USGS Publications Warehouse

    Keranen, K.M.; Klemperer, S.L.; Julia, J.; Lawrence, J. F.; Nyblade, A.A.

    2009-01-01

    [1] The Main Ethiopian Rift (MER) is a classic narrow rift that developed in hot, weak lithosphere, not in the initially cold, thick, and strong lithosphere that would be predicted by common models of rift mode formation. Our new 1-D seismic velocity profiles from Rayleigh wave/receiver function joint inversion across the MER and the Ethiopian Plateau indicate that hot lower crust and upper mantle are present throughout the broad region affected by Oligocene flood basalt volcanism, including both the present rift and the adjacent Ethiopian Plateau hundreds of kilometers from the rift valley. The region of hot lithosphere closely corresponds to the region of flood basalt volcanism, and we interpret that the volcanism and thermal perturbation were jointly caused by impingement of the Afar plume head. Across the affected region, Vs is 3.6-3.8 km/s in the lowermost crust and ???4.3 km/s in the uppermost mantle, both ??0.3 km/s lower than in the eastern and western branches of the East African Rift System to the south. We interpret the low Vs in the lower crust and upper mantle as indicative of hot lithosphere with partial melt. Our results lead to a hybrid rift mode, in which the brittle upper crust has developed as a narrow rift along the Neoproterozoic suture between East and West Gondwana, while at depth lithospheric deformation is distributed over the broad region (??400 km wide) thermally perturbed by the broad thermal upwelling associated with the Afar plume head. Development of both the East African Rift System to the south (in cold, strong lithosphere) and the MER to the north (in hot, weak lithosphere) as narrow rifts, despite their vastly different initial thermal states and depth-integrated lithospheric strength, indicates that common models of rift mode formation that focus only on temperature, thickness, and vertical strength profiles do not apply to these classic continental rifts. Instead, inherited structure and associated lithospheric weaknesses are

  14. Management adaptation of invertebrate fisheries to an extreme marine heat wave event at a global warming hot spot.

    PubMed

    Caputi, Nick; Kangas, Mervi; Denham, Ainslie; Feng, Ming; Pearce, Alan; Hetzel, Yasha; Chandrapavan, Arani

    2016-06-01

    An extreme marine heat wave which affected 2000 km of the midwest coast of Australia occurred in the 2010/11 austral summer, with sea-surface temperature (SST) anomalies of 2-5°C above normal climatology. The heat wave was influenced by a strong Leeuwin Current during an extreme La Niña event at a global warming hot spot in the Indian Ocean. This event had a significant effect on the marine ecosystem with changes to seagrass/algae and coral habitats, as well as fish kills and southern extension of the range of some tropical species. The effect has been exacerbated by above-average SST in the following two summers, 2011/12 and 2012/13. This study examined the major impact the event had on invertebrate fisheries and the management adaption applied. A 99% mortality of Roei abalone ( Haliotis roei ) and major reductions in recruitment of scallops ( Amusium balloti ), king ( Penaeus latisulcatus ) and tiger ( P. esculentus ) prawns, and blue swimmer crabs were detected with management adapting with effort reductions or spatial/temporal closures to protect the spawning stock and restocking being evaluated. This study illustrates that fisheries management under extreme temperature events requires an early identification of temperature hot spots, early detection of abundance changes (preferably using pre-recruit surveys), and flexible harvest strategies which allow a quick response to minimize the effect of heavy fishing on poor recruitment to enable protection of the spawning stock. This has required researchers, managers, and industry to adapt to fish stocks affected by an extreme environmental event that may become more frequent due to climate change.

  15. Ribosomal DNA replication fork barrier and HOT1 recombination hot spot: shared sequences but independent activities.

    PubMed

    Ward, T R; Hoang, M L; Prusty, R; Lau, C K; Keil, R L; Fangman, W L; Brewer, B J

    2000-07-01

    In the ribosomal DNA of Saccharomyces cerevisiae, sequences in the nontranscribed spacer 3' of the 35S ribosomal RNA gene are important to the polar arrest of replication forks at a site called the replication fork barrier (RFB) and also to the cis-acting, mitotic hyperrecombination site called HOT1. We have found that the RFB and HOT1 activity share some but not all of their essential sequences. Many of the mutations that reduce HOT1 recombination also decrease or eliminate fork arrest at one of two closely spaced RFB sites, RFB1 and RFB2. A simple model for the juxtaposition of RFB and HOT1 sequences is that the breakage of strands in replication forks arrested at RFB stimulates recombination. Contrary to this model, we show here that HOT1-stimulated recombination does not require the arrest of forks at the RFB. Therefore, while HOT1 activity is independent of replication fork arrest, HOT1 and RFB require some common sequences, suggesting the existence of a common trans-acting factor(s).

  16. Plasmon Mapping in Metallic Nanostructures and its Application to Single Molecule Surface Enhanced Raman Scattering: Imaging Electromagnetic Hot-Spots and Analyte Location

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Camden, Jon P.

    2013-07-12

    A major component of this proposal is to elucidate the connection between optical and electron excitation of plasmon modes in metallic nanostructures. These accomplishments are reported: developed a routine protocol for obtaining spatially resolved, low energy EELS spectra, and resonance Rayleigh scattering spectra from the same nanostructures; correlated optical scattering spectra and plasmon maps obtained using STEM/EELS; and imaged electromagnetic hot spots responsible for single-molecule surface-enhanced Raman scattering (SMSERS).

  17. CROI 2016: Hot Spots in HIV Infection and Advances in HIV Prevention.

    PubMed

    Buchbinder, Susan P; Liu, Albert Y

    2016-01-01

    The 2016 Conference on Retroviruses and Opportunistic Infections (CROI) highlighted hot spots in HIV infection. Men who have sex with men (MSM), transgender populations, people who inject drugs, fisherfolk, migrants, adolescents, and older adults are heavily impacted in a number of regions. Stigma contributes to risk behaviors and HIV acquisition across populations. HIV testing is a crucial first step in the HIV care continuum, and several large community-based surveys are underway in Africa to increase HIV testing, linkage to care, and uptake of antiretroviral treatment. Advances in preexposure prophylaxis (PrEP) featured prominently at CROI 2016. Two large efficacy trials of a vaginal ring containing the investigational drug dapivirine demonstrated efficacy and safety in preventing HIV infections in women in Africa. Data on the safety of long-acting injectable PrEP and several investigational PrEP drugs and formulations were also presented. Knowledge and use of PrEP among MSM in the United States appears to be increasing, and high uptake was seen among black MSM when provided as part of a culturally tailored support program. The use of broadly neutralizing antibodies for HIV prevention is a novel and promising approach to be evaluated in efficacy trials.

  18. Hybrid photonic-plasmonic near-field probe for efficient light conversion into the nanoscale hot spot.

    PubMed

    Koshelev, Alexander; Munechika, Keiko; Cabrini, Stefano

    2017-11-01

    In this Letter, we present a design and simulations of the novel hybrid photonic-plasmonic near-field probe. Near-field optics is a unique imaging tool that provides optical images with resolution down to tens of nanometers. One of the main limitations of this technology is its low light sensitivity. The presented hybrid probe solves this problem by combining a campanile plasmonic probe with the photonic layer, consisting of the diffractive optic element (DOE). The DOE is designed to match the plasmonic field at the broad side of the campanile probe with the fiber mode. This makes it possible to optimize the size of the campanile tip to convert light efficiently into the hot spot. The simulations show that the hybrid probe is ∼540 times more efficient compared with the conventional campanile on average in the 600-900 nm spectral range.

  19. Study of the deformation in Central Afar using InSAR NSBAS chain

    NASA Astrophysics Data System (ADS)

    Deprez, A.; Doubre, C.; Grandin, R.; Saad, I.; Masson, F.; Socquet, A.

    2013-12-01

    The Afar Depression (East Africa) connects all three continental plates of Arabia, Somalia and Nubia plates. For over 20 Ma, the divergent motion of these plates has led to the formation of large normal faults building tall scarps between the high plateaus and the depression, and the development of large basins and an incipient seafloor spreading along a series of active volcano-tectonic rift segments within the depression. The space-time evolution of the active surface deformation over the whole Afar region remains uncertain. Previous tectonic and geodetic studies confirm that a large part of the current deformation is concentrated along these segments. However, the amount of extension accommodated by other non-volcanic basins and normal faulting remains unclear, despite significant micro-seismic activity. Due to the active volcanism, large transient displacements related to dyking sequence, notably in the Manda Hararo rift (2005-2010), increase the difficulty to characterize the deformation field over simple time and space scales. In this study, we attempt to obtain a complete inventory of the deformation within the whole Afar Depression and to understand the associated phenomena, which occurred in this singular tectonic environment. We study in particular, the behavior of the structures activated during the post-dyking stage of the rift segments. For this purpose, we conduct a careful processing of a large set of SAR ENVISAT images over the 2004-2010 period, we also use previous InSAR results and GPS data from permanent stations and from campaigns conducted in 1999, 2003, 2010, 2012 within a GPS network particularly dense along the Asal-Ghoubbet segment. In one hand, in the western part of Afar, the far-field response of the 2005-2010 dyke sequence appears to be the dominant surface motion on the mean velocity field. In an other hand, more eastward across the Asal-Ghoubbet rift, strong gradients of deformation are observed. The time series analysis of both In

  20. Hydrothermal Plume Activity at Teahitia Seamount: Re-Awakening of the Society Islands Hot-Spot?

    NASA Astrophysics Data System (ADS)

    German, C. R.; Xu, G.; Yeo, I. A.; Walker, S. L.; Moffett, J.; Cutter, G. A.; Devey, C. W.; Hyvernaud, O.; Reymond, D.; Resing, J. A.

    2016-12-01

    We report results from a combined mapping and CTD-rosette investigation of the summit of Teahitia Seamount, Society Islands hot-spot, that indicates that high temperature venting may have been present by late 2013 at a site that only hosted low-temperature vents ( 30°C) when previously visited by submersible, 25 years earlier. In 2013, a non-buoyant hydrothermal plume containing high concentrations (>100nmol/L) of both dissolved and total dissolvable Fe was observed at an apparent rise-height of 110-140m above a seafloor source at 1500-1530m water depth, implying a heat-flux for the underlying venting of 13-35MW. From a comparison to the past evolution of venting at Loihi seamount (Hawaii), coupled with an examination of recent seismicity detected by the Polynesian Seismic Network, we hypothesize that venting at Teahitia may have undergone perturbation only recently and that this, in turn, may be linked to a re-awakening of the Society Islands hotspot.