Science.gov

Sample records for air entrainment admixtures

  1. Investigation of air-entraining admixture dosage in fly ash concrete

    SciTech Connect

    Ley, M.T.; Harris, N.J.; Folliard, K.J.; Hover, K.C.

    2008-09-15

    The amount of air-entraining admixture (AEA) needed to achieve a target air content in fresh concrete can vary significantly with differences in the fly ash used in the concrete. The work presented in this paper evaluates the ability to predict the AEA dosage on the basis of tests on the fly ash alone. All results were compared with the dosage of AEA required to produce an air content of 6% in fresh concrete. Fly ash was sampled from six separate sources. For four of these sources, samples were obtained both before and after the introduction of 'low-NOx burners'. Lack of definitive data about the coal itself or the specifics of the burning processes prevents the ability to draw specific conclusions about the impact of low-NOx burners on AEA demand. Nevertheless, the data suggest that modification of the burning process to meet environmental quality standards may affect the fly ash-AEA interaction.

  2. The effect of low-NO{sub x} combustion on residual carbon in fly ash and its adsorption capacity for air entrainment admixtures in concrete

    SciTech Connect

    Pedersen, K.H.; Jensen, A.D.; Dam-Johansen, K.

    2010-02-15

    Fly ash from pulverized coal combustion contains residual carbon that can adsorb the air-entraining admixtures (AEAs) added to control the air entrainment in concrete. This is a problem that has increased by the implementation of low-NO{sub x} combustion technologies. In this work, pulverized fuel has been combusted in an entrained flow reactor to test the impact of changes in operating conditions and fuel type on the AEA adsorption of ash and NO{sub x} formation. Increased oxidizing conditions, obtained by improved fuel-air mixing or higher excess air, decreased the AEA requirements of the produced ash by up to a factor of 25. This was due to a lower carbon content in the ash and a lower specific AEA adsorptivity of the carbon. The latter was suggested to be caused by changes in the adsorption properties of the unburned char and a decreased formation of soot, which was found to have a large AEA adsorption capacity based on measurements on a carbon black. The NO{sub x} formation increased by up to three times with more oxidizing conditions and thus, there was a trade-off between the AEA requirements of the ash and NO{sub x} formation. The type of fuel had high impact on the AEA adsorption behavior of the ash. Ashes produced from a Columbian and a Polish coal showed similar AEA requirements, but the specific AEA adsorptivity of the carbon in the Columbian coal ash was up to six times higher. The AEA requirements of a South African coal ash was unaffected by the applied operating conditions and showed up to 12 times higher AEA adsorption compared to the two other coal ashes. This may be caused by larger particles formed by agglomeration of the primary coal particles in the feeding phase or during the combustion process, which gave rise to increased formation of soot. (author)

  3. Air admixture to exhaust jets

    NASA Technical Reports Server (NTRS)

    Sanger, Eugen

    1953-01-01

    The problem of thrust increase by air admixture to exhaust jets of rockets, turbojet, ram- and pulse-jet engines is investigated theoretically. The optimum ratio of mixing chamber pressure to ambient pressure and speed range for thrust increase due to air admixture is determined for each type of jet engine.

  4. Air entrainment in hairy surfaces

    NASA Astrophysics Data System (ADS)

    Nasto, Alice; Regli, Marianne; Brun, P.-T.; Alvarado, José; Clanet, Christophe; Hosoi, A. E.

    2016-07-01

    Motivated by diving semiaquatic mammals, we investigate the mechanism of dynamic air entrainment in hairy surfaces submerged in liquid. Hairy surfaces are cast out of polydimethylsiloxane elastomer and plunged into a fluid bath at different velocities. Experimentally, we find that the amount of air entrained is greater than what is expected for smooth surfaces. Theoretically, we show that the hairy surface can be considered as a porous medium and we describe the air entrainment via a competition between the hydrostatic forcing and the viscous resistance in the pores. A phase diagram that includes data from our experiments and biological data from diving semiaquatic mammals is included to place the model system in a biological context and predict the regime for which the animal is protected by a plastron of air.

  5. Clouds and entrainment. [cumulus convective turbulence in clear air

    NASA Technical Reports Server (NTRS)

    Randall, D. A.

    1982-01-01

    The concept of entrainment is discussed, and the knowledge that has been acquired about entraining turbulence in clear air is surveyed. Attention is then given to observations and models of stratocumulus entrainment, which show some of the ways in which cloudiness modifies the entrainment process. Entraining cumuli are also considered, with some of the differences between cumulus entrainment and stratocumulus entrainment noted. Emphasis is placed on the dynamical aspects of entrainment; its effects on droplet spectra and other microphysical aspects are mentioned only briefly.

  6. Measurement of air entrainment in plasma jets

    SciTech Connect

    Fincke, J.R.; Rodriquez, R.; Pentecost, C.G.

    1990-01-01

    The concentration and temperature of air entrained into argon and helium plasma jets has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The argon plasma flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition of turbulence occurs, air is rapidly mixed into the jet core. The location of the transition region is determined by the rapid cooling of the jet and the resulting increase in Reynolds number. In contrast, the helium plasma flow field never exceeds a Reynolds number of 200 and remains laminar. The entrainment process in this case is controlled by molecular diffusion rather than turbulent mixing. 9 refs., 5 figs., 1 tab.

  7. Measurement of air entrainment in plasma jets

    NASA Astrophysics Data System (ADS)

    Fincke, J. R.; Rodriquez, R.; Pentecost, C. G.

    The concentration and temperature of air entrained into argon and helium plasma jets has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The argon plasma flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition of turbulence occurs, air is rapidly mixed into the jet core. The location of the transition region is determined by the rapid cooling of the jet and the resulting increase in Reynolds number. In contrast, the helium plasma flow field never exceeds a Reynolds number of 200 and remains laminar. The entrainment process in this case is controlled by molecular diffusion rather than turbulent mixing.

  8. Entrainment Rate in Shallow Cumuli: Dependence on Entrained Dry Air Sources and Probability Density Functions

    NASA Astrophysics Data System (ADS)

    Lu, C.; Liu, Y.; Niu, S.; Vogelmann, A. M.

    2012-12-01

    In situ aircraft cumulus observations from the RACORO field campaign are used to estimate entrainment rate for individual clouds using a recently developed mixing fraction approach. The entrainment rate is computed based on the observed state of the cloud core and the state of the air that is laterally mixed into the cloud at its edge. The computed entrainment rate decreases when the air is entrained from increasing distance from the cloud core edge; this is because the air farther away from cloud edge is drier than the neighboring air that is within the humid shells around cumulus clouds. Probability density functions of entrainment rate are well fitted by lognormal distributions at different heights above cloud base for different dry air sources (i.e., different source distances from the cloud core edge). Such lognormal distribution functions are appropriate for inclusion into future entrainment rate parameterization in large scale models. To the authors' knowledge, this is the first time that probability density functions of entrainment rate have been obtained in shallow cumulus clouds based on in situ observations. The reason for the wide spread of entrainment rate is that the observed clouds are affected by entrainment mixing processes to different extents, which is verified by the relationships between the entrainment rate and cloud microphysics/dynamics. The entrainment rate is negatively correlated with liquid water content and cloud droplet number concentration due to the dilution and evaporation in entrainment mixing processes. The entrainment rate is positively correlated with relative dispersion (i.e., ratio of standard deviation to mean value) of liquid water content and droplet size distributions, consistent with the theoretical expectation that entrainment mixing processes are responsible for microphysics fluctuations and spectral broadening. The entrainment rate is negatively correlated with vertical velocity and dissipation rate because entrainment

  9. Dry Air Entrainment into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovec, Gary J.; Atkinson, Robert J.; Hood, Robbie E.; LaFontaine, Frank J.

    2000-01-01

    Hurricane Earl formed in the Gulf of Mexico in September 1998. It quickly was upgraded from a tropical disturbance to tropical storm status and then to a hurricane. Earl possessed hybrid (tropical and extratropical) characteristics throughout its lifetime. The system maintained and erratic track, which led to wide variability in the operational track forecasts. It eventually made landfall on the Florida panhandle on 2 September and raced northeastward. During August and September 1998, NASA conducted the third Convection and Moisture Experiment (CAMEX-3). The experiment was focused on studying hurricanes with an emphasis toward developing a better understanding of their intensification and motion. Earl provides a unique opportunity to utilize high spatial and temporal resolution data collected from the DC-8 and high altitude ER-2 NASA platforms, which flew over Earl as it made landfall. These data can also be put into broader view provided by other instruments from the Geosychronous Operational Environmental Satellites (GOES) and the Tropical Rainfall Measuring Mission (TRMM) satellites. Hurricane Earl was affected by entrainment of dry air from the northwest. Hurricane Isis was intensifying and approaching the Mexican Pacific coast with its associated outflow potentially affecting the inflow into Earl as the storm neared Florida. In addition, a longwave synoptic trough circulation was present over the eastern U.S. Either or both of these could be responsible for the dry air into the system. This paper will focus on identifying the source of the dry by using upper-level wind and moisture fields derived from the GOES 6.7 um water vapor imagery. We will attempt to relate the large-scale observations to those from the NASA aircraft. An infrared instrument onboard the ER-2 also has a similar wavelength and may be able to confirm some of the GOES findings. In addition, a microwave radiometer with 4 channels focused on measuring precipitation and its associated ice

  10. Entrainment of Air into Vertical Jets in a Crosswind

    NASA Astrophysics Data System (ADS)

    Roberts, K. K.; Solovitz, S.; Freedland, G.; Camp, E.; Cal, R. B.; Mastin, L. G.

    2015-12-01

    During volcanic eruptions, ash concentration must be determined for aviation safety, but the limiting threshold is difficult to distinguish visually. Computational models are typically used to predict ash concentrations, using inputs such as plume height, eruptive duration, and wind speeds. The models also depend on empirical parameters, such as the entrainment of atmospheric air as a ratio of the air inflow speed and the jet speed. Entrainment of atmospheric air plays a critical role in the behavior of volcanic plumes in the atmosphere, impacting the mass flow rate, buoyancy, and particle concentration of the plume. This process is more complex in a crosswind, leading to greater uncertainty in the model results. To address these issues, a laboratory-scale study has been conducted to improve the entrainment models. Observations of a vertical, unconfined jet are performed using Particle Image Velocimetry, while varying jet density using different compressed gases and Reynolds number. To test the effects of a crosswind on plume entrainment rates, these are then compared with similar jet experiments in a wind tunnel. A series of jet geometries, jet speeds and tunnel speeds are considered. The measured velocities are used to determine the entrainment response, which can be used to determine ash concentration over time as atmospheric air is entrained into the plume. We also quantify the mean and the fluctuations in flow velocity.

  11. Maximal Air Bubble Entrainment at Liquid-Drop Impact

    NASA Astrophysics Data System (ADS)

    Bouwhuis, Wilco; van der Veen, Roeland C. A.; Tran, Tuan; Keij, Diederik L.; Winkels, Koen G.; Peters, Ivo R.; van der Meer, Devaraj; Sun, Chao; Snoeijer, Jacco H.; Lohse, Detlef

    2012-12-01

    At impact of a liquid drop on a solid surface, an air bubble can be entrapped. Here, we show that two competing effects minimize the (relative) size of this entrained air bubble: for large drop impact velocity and large droplets, the inertia of the liquid flattens the entrained bubble, whereas for small impact velocity and small droplets, capillary forces minimize the entrained bubble. However, we demonstrate experimentally, theoretically, and numerically that in between there is an optimum, leading to maximal air bubble entrapment. For a 1.8 mm diameter ethanol droplet, this optimum is achieved at an impact velocity of 0.25m/s. Our results have a strong bearing on various applications in printing technology, microelectronics, immersion lithography, diagnostics, or agriculture.

  12. Universal mechanism for air entrainment during liquid impact

    NASA Astrophysics Data System (ADS)

    Hendrix, Maurice H. W.; Bouwhuis, Wilco; van der Meer, Devaraj; Lohse, Detlef; Snoeijer, Jacco H.

    2016-02-01

    When a mm-sized liquid drop approaches a deep liquid pool, both the interface of the drop and the pool deform before the drop touches the pool. The build up of air pressure prior to coalescence is responsible for this deformation. Due to this deformation, air can be entrained at the bottom of the drop during the impact. We quantify the amount of entrained air numerically, using the Boundary Integral Method (BIM) for potential flow for the drop and the pool, coupled to viscous lubrication theory for the air film that has to be squeezed out during impact. We compare our results to various experimental data and find excellent agreement for the amount of air that is entrapped during impact onto a pool. Next, the impact of a rigid sphere onto a pool is numerically investigated and the air that is entrapped in this case also matches with available experimental data. In both cases of drop and sphere impact onto a pool the numerical air bubble volume V_b is found to be in agreement with the theoretical scaling V_b/V_{drop/sphere} ~ St^{-4/3}, where St is the Stokes number. This is the same scaling that has been found for drop impact onto a solid surface in previous research. This implies a universal mechanism for air entrainment for these different impact scenarios, which has been suggested in recent experimental work, but is now further elucidated with numerical results.

  13. Dispersal and air entrainment in unconfined dilute pyroclastic density currents

    NASA Astrophysics Data System (ADS)

    Andrews, Benjamin J.

    2014-09-01

    Unconfined scaled laboratory experiments show that 3D structures control the behavior of dilute pyroclastic density currents (PDCs) during and after liftoff. Experiments comprise heated and ambient temperature 20 μm talc powder turbulently suspended in air to form density currents within an unobstructed 8.5 × 6 × 2.6-m chamber. Comparisons of Richardson, thermal Richardson, Froude, Stokes, and settling numbers and buoyant thermal to kinetic energy densities show good agreement between experimental currents and dilute PDCs. The experimental Reynolds numbers are lower than those of PDCs, but the experiments are fully turbulent; thus, the large-scale dynamics are similar between the two systems. High-frequency, simultaneous observation in three orthogonal planes shows that the currents behave very differently than previous 2D (i.e., confined) currents. Specifically, whereas ambient temperature currents show radial dispersal patterns, buoyancy reversal, and liftoff of heated currents focuses dispersal along narrow axes beneath the rising plumes. The aspect ratios, defined as the current length divided by a characteristic width, are typically 2.5-3.5 in heated currents and 1.5-2.5 in ambient temperature currents, reflecting differences in dispersal between the two types of currents. Mechanisms of air entrainment differ greatly between the two currents: entrainment occurs primarily behind the heads and through the upper margins of ambient temperature currents, but heated currents entrain air through their lateral margins. That lateral entrainment is much more efficient than the vertical entrainment, >0.5 compared to ˜0.1, where entrainment is defined as the ratio of cross-stream to streamwise velocity. These experiments suggest that generation of coignimbrite plumes should focus PDCs along narrow transport axes, resulting in elongate rather than radial deposits.

  14. Entrainment.

    ERIC Educational Resources Information Center

    Carrier, Romance F.

    1978-01-01

    Presents a literature review including: (1) theoretical studies concerned with the development of methdology to determine the significance of entrainment effects to whale populations and ecosystems; and (2) site and laboratory studies. A list of 107 references drawn from the 1976 and 1977 literature is also presented. (HM)

  15. Freeze-Thaw Durability of Air-Entrained Concrete

    PubMed Central

    Shang, Huai-Shuai; Yi, Ting-Hua

    2013-01-01

    One of the most damaging actions affecting concrete is the abrupt temperature change (freeze-thaw cycles). The types of deterioration of concrete structures by cyclic freeze-thaw can be largely classified into surface scaling (characterized by the weight loss) and internal crack growth (characterized by the loss of dynamic modulus of elasticity). The present study explored the durability of concrete made with air-entraining agent subjected to 0, 100, 200, 300, and 400 cycles of freeze-thaw. The experimental study of C20, C25, C30, C40, and C50 air-entrained concrete specimens was completed according to “the test method of long-term and durability on ordinary concrete” GB/T 50082-2009. The dynamic modulus of elasticity and weight loss of specimens were measured after different cycles of freeze-thaw. The influence of freeze-thaw cycles on the relative dynamic modulus of elasticity and weight loss was analyzed. The findings showed that the dynamic modulus of elasticity and weight decreased as the freeze-thaw cycles were repeated. They revealed that the C30, C40, and C50 air-entrained concrete was still durable after 300 cycles of freeze-thaw according to the experimental results. PMID:23576906

  16. Freeze-thaw durability of air-entrained concrete.

    PubMed

    Shang, Huai-Shuai; Yi, Ting-Hua

    2013-01-01

    One of the most damaging actions affecting concrete is the abrupt temperature change (freeze-thaw cycles). The types of deterioration of concrete structures by cyclic freeze-thaw can be largely classified into surface scaling (characterized by the weight loss) and internal crack growth (characterized by the loss of dynamic modulus of elasticity). The present study explored the durability of concrete made with air-entraining agent subjected to 0, 100, 200, 300, and 400 cycles of freeze-thaw. The experimental study of C20, C25, C30, C40, and C50 air-entrained concrete specimens was completed according to "the test method of long-term and durability on ordinary concrete" GB/T 50082-2009. The dynamic modulus of elasticity and weight loss of specimens were measured after different cycles of freeze-thaw. The influence of freeze-thaw cycles on the relative dynamic modulus of elasticity and weight loss was analyzed. The findings showed that the dynamic modulus of elasticity and weight decreased as the freeze-thaw cycles were repeated. They revealed that the C30, C40, and C50 air-entrained concrete was still durable after 300 cycles of freeze-thaw according to the experimental results. PMID:23576906

  17. Characteristics of air entrainment during dynamic wetting failure along a planar substrate

    NASA Astrophysics Data System (ADS)

    Kumar, Satish; Vandre, Eric; Carvalho, Marcio

    2014-11-01

    We report results of experiments characterizing the onset of air entrainment during dynamic wetting failure along a planar substrate (J. Fluid Mech. 747, 119 (2014)). Using high-speed video, dynamic contact line (DCL) behavior is recorded as a tape substrate is drawn through a bath of a glycerol/water solution. Air entrainment is identified by triangular air films that elongate from the DCL above a critical substrate speed. Meniscus confinement between the substrate and a stationary plate delays air entrainment to higher speeds for a wide range of liquid viscosities. Liquid pressurization moves the meniscus near a sharp corner, changing its shape and further postponing air entrainment. Meniscus shapes recorded near the DCL demonstrate that smaller entrained air films appear in the more viscous solutions. Regardless of size, air films become unstable to thickness perturbations and ultimately rupture, leading to entrainment of air bubbles. Recorded critical speeds and air-film sizes compare well to predictions from a hydrodynamic model for dynamic wetting failure, indicating that strong air stresses near the DCL trigger the onset of air entrainment. The results suggest strategies for postponing air entrainment, which often limits the maximum speed of industrial coating processes.

  18. Freeze-thaw durability of microwave cured air-entrained concrete

    SciTech Connect

    Pheeraphan, T.; Leung, C.K.Y.

    1997-03-01

    The strength development of concrete can be greatly accelerated by curing with microwave energy. Microwave curing can therefore be beneficial to construction operations such as concrete precasting and repair. To provide freeze-thaw durability for infrastructure applications, air entrainment has to be introduced. In this investigation, the freeze-thaw resistance of microwave cured air-entrained concrete is measured, and compared to that of air-entrained concrete under normal curing. Their compressive strength at 14 days and air-void characteristics are also measured and compared. The test results indicate that microwave curing can impair the freeze-thaw durability of high w/c concrete but not for low w/c concrete. Also, under microwave curing, the decrease in strength due to air entrainment becomes more significant. Based on these observations, it is recommended that for microwave cured air-entrained concrete, a low w/c ratio should be employed.

  19. Entrainment of Upper Level Dry Air into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovee, Gary J.; Hood, Robbie E.; Atkinson, Robert J.; LaFontaine, Frank J.

    2000-01-01

    Hurricane Earl developed from a tropical wave that moved into the Gulf of Mexico, which triggered abundant convection. On 1 Sept. 1998, the wave was upgraded directly to a tropical storm. Earl reached hurricane status the next morning. The system moved erratically as it interacted with an upper level short wave trough rotating around a long wave trough to the northeast. The storm made landfall near 0600 UTC on 3 September near Panama City, FL. During August and September 1998, NASA conducted the Third Convection and Moisture Experiment (CAMEX-3). It focused on studying the intensity, track, and impacts at landfall of hurricanes. On the afternoon of 2 September 1998, the NASA ER2 high-altitude aircraft flying at 65,000 feet in tandem with the NASA DC-8 flying at 35,000 feet flew over and through, respectively, the eastern rainbands of Earl near the Florida Panhandle as the storm neared landfall in the region. Two approaches to studying Earl are undertaken here: first, an examination of the source and height of the dry air region using GOES-8 water vapor data and, second, a look into the impact of the dry air entrainment on the system using aircraft remote sensing data.

  20. Entrainment of Upper Level Dry Air Into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovec, Gary J.; Hood, Robbie E.; Atkinson, Robert J.; LaFontaine, Frank J.

    1999-01-01

    Hurricane Earl formed in the Gulf of Mexico in September 1998. It quickly was upgraded from a tropical disturbance to tropical storm status and then to a hurricane. Earl possessed hybrid (tropical and extratropical) characteristics throughout its lifetime. The system maintained and erratic track, which led to wide variability in the operational track forecasts. It eventually made landfall on the Florida panhandle on 2 September and raced northeastward. During August and September 1998, NASA conducted the third Convection and Moisture Experiment (CAMEX-3). The experiment was focused on studying hurricanes with an emphasis toward developing a better understanding of their intensification and motion. Earl provides a unique opportunity to utilize high spatial and temporal resolution data collected from the DC-8 and high altitude ER-2 NASA platforms, which flew over Earl as it made landfall. These data can also be put into broader view provided by other instruments from the Geosynchronous Operational Environmental Satellites (GOES) and the Tropical Rainfall Measuring Mission (TRMM) satellites. Hurricane Earl was affected by entrainment of dry air from the northwest. Hurricane Isis was intensifying and approaching the Mexican Pacific coast with its associated outflow potentially affecting the inflow into Earl as the storm neared Florida. In addition, a longwave synoptic trough circulation was present over the eastern U.S. Either or both of these could be responsible for the dry air into the system. This paper will focus on identifying the source of the dry by using upper-level wind and moisture fields derived from the GOES 6.7 um water vapor imagery. We will attempt to relate the large-scale observations to those from the NASA aircraft. An infrared instrument onboard the ER-2 also has a similar wavelength and may be able to confirm some of the GOES findings. In addition, a microwave radiometer with 4 channels focused on measuring precipitation and its associated ice

  1. What's All the Talc About? Air Entrainment in Dilute Pyroclastic Density Currents

    NASA Astrophysics Data System (ADS)

    Marshall, B. J.; Andrews, B. J.; Fauria, K.

    2015-12-01

    A quantitative understanding of air entrainment is critical to predicting the behaviors of dilute Pyroclastic Density Currents (PDCs), including runout distance, liftoff, and mass fractionation into co-PDC plumes. We performed experiments in an 8.5x6x2.6 meter tank using 20 micron talc powder over a range of conditions to describe air entrainment as a function of temperature, duration and mass flux. The experiments are reproducible and are scaled with respect to the densimetric and thermal Richardson numbers (Ri and RiT), Froude number, thermal to kinetic energy density ratio (TEb/KE), Stokes number, and Settling number, such that they are dynamically similar to natural dilute PDCs. Experiments are illuminated with a swept laser sheet and imaged at 1000 Hz to create 3D reconstructions of the currents, with ~1-2 cm resolution, at up to 1.5 Hz. An array of 30 high-frequency thermocouples record the precise temperature in the currents at 3 Hz. Bulk entrainment rates are calculated based on measured current volumes, surface areas, temperatures and velocities. Entrainment rates vary from ~0-0.9 and do not show simple variation with TEb/KE, Ri, or RiT. Entrainment does, however, increase with decreasing eruption duration and increasing mass flux. Our results suggest that current heads entrain air more efficiently than current bodies (>0.5 compared to ~0.1). Because shorter duration currents have proportionally larger heads, their bulk entrainment rates are controlled by those heads, whereas longer duration currents are dominated by their bodies. Our experiments demonstrate that air entrainment, which exerts a fundamental control on PDC runout and liftoff, varies spatially and temporally within PDCs.

  2. Effect of fast freeze-thaw cycles on mechanical properties of ordinary-air-entrained concrete.

    PubMed

    Shang, Huai-shuai; Cao, Wei-qun; Wang, Bin

    2014-01-01

    Freezing-thawing resistance is a very significant characteristic for concrete in severe environment (such as cold region with the lowest temperature below 0°C). In this study, ordinary-air-entrained (O-A-E) concrete was produced in a laboratory environment; the compressive strength, cubic compressive strength of C50, C40, C30, C25, and C20 ordinary-air-entrained concrete, tensile strength, and cleavage strength of C30 ordinary-air-entrained concrete were measured after fast freeze-thaw cycles. The effects of fast freeze-thaw cycles on the mechanical properties (compressive strength and cleavage strength) of ordinary-air-entrained concrete materials are investigated on the basis of the experimental results. And the concise mathematical formula between mechanical behavior and number of fast freeze-thaw cycles was established. The experiment results can be used as a reference in design, maintenance, and life prediction of ordinary-air-entrained concrete structure (such as dam, offshore platform, etc.) in cold regions. PMID:24895671

  3. Effect of Fast Freeze-Thaw Cycles on Mechanical Properties of Ordinary-Air-Entrained Concrete

    PubMed Central

    Shang, Huai-shuai; Cao, Wei-qun; Wang, Bin

    2014-01-01

    Freezing-thawing resistance is a very significant characteristic for concrete in severe environment (such as cold region with the lowest temperature below 0°C). In this study, ordinary-air-entrained (O-A-E) concrete was produced in a laboratory environment; the compressive strength, cubic compressive strength of C50, C40, C30, C25, and C20 ordinary-air-entrained concrete, tensile strength, and cleavage strength of C30 ordinary-air-entrained concrete were measured after fast freeze-thaw cycles. The effects of fast freeze-thaw cycles on the mechanical properties (compressive strength and cleavage strength) of ordinary-air-entrained concrete materials are investigated on the basis of the experimental results. And the concise mathematical formula between mechanical behavior and number of fast freeze-thaw cycles was established. The experiment results can be used as a reference in design, maintenance, and life prediction of ordinary-air-entrained concrete structure (such as dam, offshore platform, etc.) in cold regions. PMID:24895671

  4. Quantification of hood effectiveness and entrained subsurface air in a Seattle Hospital

    SciTech Connect

    Dietz, R.N.; Goodrich, R.W.

    1994-05-01

    An underground 3-story wing of a hospital having problems with sewer air odors was tested with perfluorocarbon tracer (PFI) technology to quantify the performance of the mechanical ventilation system and determine the extent of sewer air entrainment and chemical hood effectiveness.

  5. Coherent anti-Stokes Raman spectroscopic measurement of air entrainment in argon plasma jets

    SciTech Connect

    Fincke, J.R.; Rodriquez, R.; Pentecost, C.G.

    1990-01-01

    The concentration and temperature of air entrained into an argon plasma jet has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition to turbulence occurs, air is rapidly entrained into the jet core. The location of the transition region is thought to be driven by the rapid cooling of the jet and the resulting increase in Reynolds number. 8 refs., 6 figs.

  6. Coherent anti-Stokes Raman spectroscopic measurement of air entrainment in argon plasma jets

    NASA Astrophysics Data System (ADS)

    Fincke, J. R.; Rodriquez, R.; Pentecost, C. G.

    The concentration and temperature of air entrained into an argon plasma jet has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition to turbulence occurs, air is rapidly entrained into the jet core. The location of the transition region is thought to be driven by the rapid cooling of the jet and the resulting increase in Reynolds number.

  7. Air Entrainment and Thermal Evolution of Pyroclastic Density Currents at Tungurahua, Ecuador

    NASA Astrophysics Data System (ADS)

    Benage, M. C.; Dufek, J.; Mothes, P. A.

    2015-12-01

    The entrainment of air into pyroclastic density currents (PDCs) impacts the thermal profile and evolution of the current. However, the associated hazards and opaqueness of PDCs make it difficult to discern internal dynamics and entrainment through direct observations. In this work, we use a three-dimensional multiphase Eulerian-Eulerian-Lagrangian (EEL) model, deposit descriptions, and pyroclast field data, such as paleomagnetic and rind thickness, to study the entrainment efficiency and thus the thermal history of PDCs down the Juive Grande quebrada during the August 16-17th 2006 eruption of Tungurahua volcano. We conclude that 1) the efficient entrainment of ambient air cools the nose and upper portion of the PDCs by 30-60% of the original temperature, 2) PDCs with an initial temperature of 727 °C are on average more efficient at entraining ambient air than PDCs with an initial temperature of 327 °C, 3) the channelized PDCs develop a particle concentration gradient with a concentrated bed load region and suspended load region that leads to a large vertical temperature gradient, and 4) observations and pyroclast temperatures and textures suggest that the PDCs had temperatures greater than 327 °C in the bed load region while the upper, exterior portion of the currents cooled down to temperatures less than 100 °C. By combining field data and numerical models, the structure and dynamics of a PDC can be deduced for these relatively common small volume PDCs.

  8. MEASUREMENT OF AIR ENTRAINMENT AND DUST EMISSION DURING SHELLED CORN RECEIVING OPERATIONS WITH SIMULATED HOPPER BOTTOM GRAIN TRAILERS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dust emissions from grain elevator operations can be a safety and health risk, and a nuisance. Dust emission and air entrainment data are needed for designing adequate and effective control methods. This study measured the dust emitted and air entrained during corn receiving operations at an eleva...

  9. A Subgrid Model for Predicting Air Entrainment Rates in Bubbly Flows

    NASA Astrophysics Data System (ADS)

    Ma, Jingsen; Oberai, Assad A.; Drew, Donald E.; Lahey, Richard T., Jr.; Moraga, Francisco J.

    2008-11-01

    In this talk we present a fairly simple subgrid air entrainment model that accurately predicts the rate of air entrainment, which is critical in simulating multiphase (air/water) flows. The derivation of this model begins by assuming that a thin sheet of air is carried into the water by the inertia of the liquid at the free surface. A momentum balance on the entrained gas layer results in an expression for the entrained volumetric gas flow rate, in terms of the local liquid velocity, gas viscosity etc., which are readily available from a multiphase RANS-type simulation. This model has been validated against extensive experimental data on both plunging jets and hydraulic jumps over a wide range of liquid velocities. It was implemented in a two-fluid computational fluid dynamics code (CFDShipM) to be used to predict the void fraction distribution underneath a plunging liquid jet at different depths and jet velocities. The results were found to match the experimental observations very well. The application of this model to more challenging problems, including hydraulic jumps and full-scale ship simulations, is currently underway.

  10. Foam and Entrained Air Management: A Practical Perspective

    NASA Astrophysics Data System (ADS)

    Mirza, Sal; Hoekstra, Philip M.

    Paper machines and the papermaking process have undergone remarkable changes in terms of chemistry applications and design parameters. These trends increase the likelihood that the stock will foam and generate turbulence, thus allowing air to be drawn in. For example, higher machine speeds and gap former technology cause more air to be present in the white water, which could ultimately lead to foam problems if not managed correctly.

  11. Experimental study of near-field air entrainment by subsonic volcanic jets

    USGS Publications Warehouse

    Solovitz, S.A.; Mastin, L.G.

    2009-01-01

    The flow structure in the developing region of a turbulent jet has been examined using particle image velocimetry methods, considering the flow at steady state conditions. The velocity fields were integrated to determine the ratio of the entrained air speed to the jet speed, which was approximately 0.03 for a range of Mach numbers up to 0.89 and. Reynolds numbers up to 217,000. This range of experimental Mach and Reynolds numbers is higher than previously considered for high-accuracy entrainment measures, particularly in the near-vent region. The entrainment values are below those commonly used for geophysical analyses of volcanic plumes, suggesting that existing 1-D models are likely to understate the tendency for column collapse. Copyright 2009 by the American Geophysical Union.

  12. Large Field of View PIV Measurements of Air Entrainment by SLS SMAT Water Sound Suppression System

    NASA Astrophysics Data System (ADS)

    Stegmeir, Matthew; Pothos, Stamatios; Bissell, Dan

    2015-11-01

    Water-based sound suppressions systems have been used to reduce the acoustic impact of space vehicle launches. Water flows at a high rate during launch in order to suppress Engine Generated Acoustics and other potentially damaging sources of noise. For the Space Shuttle, peak flow rates exceeded 900,000 gallons per minute. Such large water flow rates have the potential to induce substantial entrainment of the surrounding air, affecting the launch conditions and generating airflow around the launch vehicle. Validation testing is necessary to quantify this impact for future space launch systems. In this study, PIV measurements were performed to map the flow field above the SMAT sub-scale launch vehicle scaled launch stand. Air entrainment effects generated by a water-based sound suppression system were studied. Mean and fluctuating fluid velocities were mapped up to 1m above the test stand deck and compared to simulation results. Measurements performed with NASA MSFC.

  13. Material Properties Governing Co-Current Flame Spread: The Effect of Air Entrainment

    NASA Technical Reports Server (NTRS)

    Coutin, Mickael; Rangwala, Ali S.; Torero, Jose L.; Buckley, Steven G.

    2003-01-01

    A study on the effects of lateral air entrainment on an upward spreading flame has been conducted. The fuel is a flat PMMA plate of constant length and thickness but variable width. Video images and surface temperatures have allowed establishing the progression of the pyrolyis front and on the flame stand-off distance. These measurements have been incorporated into a theoretical formulation to establish characteristic mass transfer numbers ("B" numbers). The mass transfer number is deemed as a material related parameter that could be used to assess the potential of a material to sustain co-current flame spread. The experimental results show that the theoretical formulation fails to describe heat exchange between the flame and the surface. The discrepancies seem to be associated to lateral air entrainment that lifts the flame off the surface and leads to an over estimation of the local mass transfer number. Particle Image Velocimetry (PIV) measurements are in the process of being acquired. These measurements are intended to provide insight on the effect of air entrainment on the flame stand-off distance. A brief description of the methodology to be followed is presented here.

  14. Using Neutron Radiography to Quantify Water Transport and the Degree of Saturation in Entrained Air Cement Based Mortar

    NASA Astrophysics Data System (ADS)

    Lucero, Catherine L.; Bentz, Dale P.; Hussey, Daniel S.; Jacobson, David L.; Weiss, W. Jason

    Air entrainment is commonly added to concrete to help in reducing the potential for freeze thaw damage. It is hypothesized that the entrained air voids remain unsaturated or partially saturated long after the smaller pores fill with water. Small gel and capillary pores in the cement matrix fill quickly on exposure to water, but larger pores (entrapped and entrained air voids) require longer times or other methods to achieve saturation. As such, it is important to quantitatively determine the water content and degree of saturation in air entrained cementitious materials. In order to further investigate properties of cement-based mortar, a model based on Beer's Law has been developed to interpret neutron radiographs. This model is a powerful tool for analyzing images acquired from neutron radiography. A mortar with a known volume of aggregate, water to cement ratio and degree of hydration can be imaged and the degree of saturation can be estimated.

  15. The influence of clean air entrainment on the droplet effective radius of warm maritime convective clouds

    SciTech Connect

    Pontikis, C.A.; Hicks, E.M.

    1993-09-01

    The influence of clear air entrainment on the droplet effective radius of cloudy air parcels is investigated theoretically and experimentally by using data collected in 16 warm maritime tropical cumuli during the Joint Hawaii Warm Rain Project (1985). The theoretical study consists of calculations of the droplet spectrum, droplet effective radius, and liquid water content performed by an entraining cloud parcel model for different entrainment-mixing scenarios. The numerical simulation results are interpreted by means of an analytic equation of the droplet effective radius expressed as a function of both the liquid water content and the droplet concentration. In the experiment study, the behavior of the effective radius is examined at all scales as a function of the liquid water content, used as a dilution degree indicator. At a given cloud level, in the abscence of secondary droplet activation, the effective radius of the droplet spectrum of small-scale parcels (10-Hz data) is roughly independent of the liquid water content and appears unaffected by entrainment. In contrast, if secondary droplet activation occurs in diluted ascending cloud parcels, a wide range of effective radius values is observed for a given liquid water content as a result of the induced variation of the droplet concentration. Further, mean cloud pass effective radii increase with increasing mean pass liquid water contents and mean pass height above cloud base. The results limit the validity of the classical cloud effective radius parameterizations used in the radiative transfer calculations in climate models and some suggestions to improve these parameterizations are presented.

  16. Pyrrhotite Oxidation as an Indicator of Air Entrainment into Eruption Columns

    NASA Astrophysics Data System (ADS)

    Matsumoto, K.; Nakamura, M.

    2015-12-01

    Fragmented magmas in eruption columns obtain buoyancy by entrainment and heating of cold air. Theoretically, the proportion of the entrained air and temperature change of the magma fragments can be calculated through rigorous fluid dynamics, but these factors have not been evaluated from natural pyroclasts. In this study, we developed a new method for quantifying the degree of air entrainment based on pyrrhotite (Po) oxidation reactions, whose time scale corresponds to the typical duration of (sub-) Plinian eruptions (i.e., tens of seconds to a few hours). We examined pumice clasts and lava flows from the 1914-15 eruption of Sakurajima. During this event, various types of eruption were observed: Plinian eruptions with intermittent generation of clastogenic lava flow, followed by voluminous effusive lava flow. The products of Po oxidation consisted of magnetite (Mt), hematite (Hm), and their composites. The occurrence of Po and the oxides were systematically correlated with the types of eruption. In Plinian pumices, unreacted Po ± porous Mt-Hm composite reaction rims were dominant, whereas in the clastogenic lava, porous Hm occurred predominantly with scarce unreacted Po and porous Mt. In the effusive lava, a variety of Po, Mt, and Hm assemblage was observed, but Po did not coexist with Hm-rims. The porous Mt crystals in the pumice clasts were found to be Ti-free, whereas those in the effusive lava had Ti-enriched rims. These correlations were explained by considering two factors: the achieved fO2, which was controlled by the extent of fragmentation (i.e., surface area exposed to air), and duration of the maintenance of a high-T and high-fO2 condition. This study has demonstrated that the cooling timescale of pumice clasts in eruption columns can be estimated through the rate of Po oxidation reactions Po→Mt and Mt→Hm. Lavas of clastogenic origin may also be recognized from the reaction.

  17. On the relationship between air entrainment, internal flows and closure mechanism in a ventilated supercavity

    NASA Astrophysics Data System (ADS)

    Karn, Ashish; Arndt, Roger; Hong, Jiarong

    2015-11-01

    An understanding of underlying physics behind ventilation demand is critical for the operation of underwater vehicles based on ventilated supercavitation for a number of reasons viz. gas entrainment requirements for cavity formation and sustenance. The prior studies on the ventilation demand have reported that the gas entrainment requirement to form a supercavity is substantially larger than that needed to sustain it. This phenomenon, known as ventilation hysteresis, is particularly important from the viewpoint of reduction in gas requirements. However, little physical insights into this phenomenon has yet been provided. In this study, systematic investigations are conducted into ventilation hysteresis with respect to the formation and collapse behaviors of ventilated supercavities. It is suggested that the supercavity formation process is driven by bubble coalescence, whereas its collapse is related to the pressure difference across the supercavity interface at its rear portion. Further, we examine the relationship between ventilation hysteresis, supercavity closures and air entrainment requirements for supercavity formation and sustenance under steady and unsteady flow conditions. These observations are directly related to the internal flows inside the supercavity.

  18. Turbulent hydraulic jumps: Effect of Weber number and Reynolds number on air entrainment and micro-bubble generation

    NASA Astrophysics Data System (ADS)

    Mortazavi, Milad; Mani, Ali

    2015-11-01

    Air entrainment in breaking waves is a ubiquitous and complex phenomenon. It is the main source of air transfer from atmosphere to the oceans. Furthermore, air entrainment due to ship-induced waves contributes to bubbly flows in ship wakes and also affect their performance. In this study, we consider a turbulent hydraulic jump as a canonical setting to investigate air entrainment due to turbulence-wave interactions. The flow has an inlet Froude number of 2.0, while three different Weber numbers (We = 1820, 729, 292), and two different Reynolds numbers (Re = 11000, 5500) based on the inlet height and inlet velocity are investigated. Air entrainment is shown to be very sensitive to the We number, while Re number has a minor effect. Wave breaking and interface collisions are significantly reduced in the low Weber number cases. As a result, micro-bubble generation is significantly reduced with decreasing Weber number. Vortex shedding events are observed to emerge at the toe of the jump in all of the cases. For high Weber number regimes, shedding of vortices is accompanied by engulfment of air pockets into the jump in a periodic manner, while for lower Webber number regimes such events are significantly suppressed. Reynolds number is shown to have a negligible effect on the air entrainment, wave breaking and micro-bubble generation, contrary to the previous assumptions in other studies. Supported by ONR.

  19. The effect of water temperature on air entrainment, bubble plumes, and surface foam in a laboratory breaking-wave analog

    NASA Astrophysics Data System (ADS)

    Callaghan, A. H.; Stokes, M. D.; Deane, G. B.

    2014-11-01

    Air-entraining breaking waves form oceanic whitecaps and play a key role in climate regulation through air-sea bubble-mediated gas transfer, and sea spray aerosol production. The effect of varying sea surface temperature on air entrainment, subsurface bubble plume dynamics, and surface foam evolution intrinsic to oceanic whitecaps has not been well studied. By using a breaking wave analog in the laboratory over a range of water temperatures (Tw = 5°C to Tw = 30°C) and different source waters, we have examined changes in air entrainment, subsurface bubble plumes, and surface foam evolution over the course of a breaking event. For filtered seawater, air entrainment was estimated to increase by 6% between Tw = 6°C and Tw = 30°C, driven by increases of about 43% in the measured surface roughness of the plunging water sheet. After active air entrainment, the rate of loss of air through bubble degassing was more rapid at colder water temperatures within the first 0.5 s of plume evolution. Thereafter, the trend reversed and bubbles degassed more quickly in warmer water. The largest observed temperature-dependent differences in subsurface bubble distributions occurred at radii greater than about 700 μm. Temperature-dependent trends observed in the subsurface bubble plume were mirrored in the temporal evolution of the surface whitecap foam area demonstrating the intrinsic link between surface whitecap foam and the subsurface bubble plume. Differences in foam and plume characteristics due to different water sources were greater than the temperature dependencies for the filtered seawater examined.

  20. Keeping warm with fur in cold water: entrainment of air in hairy surfaces

    NASA Astrophysics Data System (ADS)

    Nasto, Alice; Regli, Marianne; Brun, Pierre-Thomas; Clanet, Christophe; Hosoi, Anette

    2015-11-01

    Instead of relying on a thick layer of body fat for insulation as many aquatic mammals do, fur seals and otters trap air in their dense fur for insulation in cold water. Using a combination of model experiments and theory, we rationalize this mechanism of air trapping underwater for thermoregulation. For the model experiments, hairy surfaces are fabricated using laser cut molds and casting samples with PDMS. Modeling the hairy texture as a network of capillary tubes, the imbibition speed of water into the hairs is obtained through a balance of hydrostatic pressure and viscous stress. In this scenario, the bending of the hairs and capillary forces are negligible. The maximum diving depth that can be achieved before the hairs are wetted to the roots is predicted from a comparison of the diving speed and imbibition speed. The amount of air that is entrained in hairy surfaces is greater than what is expected for classic Landau-Levich-Derjaguin plate plunging. A phase diagram with the parameters from experiments and biological data allows a comparison of the model system and animals.

  1. Experimental study on durability improvement of fly ash concrete with durability improving admixture.

    PubMed

    Quan, Hong-zhu; Kasami, Hideo

    2014-01-01

    In order to improve the durability of fly ash concrete, a series of experimental studies are carried out, where durability improving admixture is used to reduce drying shrinkage and improve freezing-thawing resistance. The effects of durability improving admixture, air content, water-binder ratio, and fly ash replacement ratio on the performance of fly ash concrete are discussed in this paper. The results show that by using durability improving admixture in nonair-entraining fly ash concrete, the compressive strength of fly ash concrete can be improved by 10%-20%, and the drying shrinkage is reduced by 60%. Carbonation resistance of concrete is roughly proportional to water-cement ratio regardless of water-binder ratio and fly ash replacement ratio. For the specimens cured in air for 2 weeks, the freezing-thawing resistance is improved. In addition, by making use of durability improving admixture, it is easier to control the air content and make fly ash concrete into nonair-entraining one. The quality of fly ash concrete is thereby optimized. PMID:25013870

  2. Experimental Study on Durability Improvement of Fly Ash Concrete with Durability Improving Admixture

    PubMed Central

    Quan, Hong-zhu; Kasami, Hideo

    2014-01-01

    In order to improve the durability of fly ash concrete, a series of experimental studies are carried out, where durability improving admixture is used to reduce drying shrinkage and improve freezing-thawing resistance. The effects of durability improving admixture, air content, water-binder ratio, and fly ash replacement ratio on the performance of fly ash concrete are discussed in this paper. The results show that by using durability improving admixture in nonair-entraining fly ash concrete, the compressive strength of fly ash concrete can be improved by 10%–20%, and the drying shrinkage is reduced by 60%. Carbonation resistance of concrete is roughly proportional to water-cement ratio regardless of water-binder ratio and fly ash replacement ratio. For the specimens cured in air for 2 weeks, the freezing-thawing resistance is improved. In addition, by making use of durability improving admixture, it is easier to control the air content and make fly ash concrete into nonair-entraining one. The quality of fly ash concrete is thereby optimized. PMID:25013870

  3. High temperature air-blown woody biomass gasification model for the estimation of an entrained down-flow gasifier.

    PubMed

    Kobayashi, Nobusuke; Tanaka, Miku; Piao, Guilin; Kobayashi, Jun; Hatano, Shigenobu; Itaya, Yoshinori; Mori, Shigekatsu

    2009-01-01

    A high temperature air-blown gasification model for woody biomass is developed based on an air-blown gasification experiment. A high temperature air-blown gasification experiment on woody biomass in an entrained down-flow gasifier is carried out, and then the simple gasification model is developed based on the experimental results. In the experiment, air-blown gasification is conducted to demonstrate the behavior of this process. Pulverized wood is used as the gasification fuel, which is injected directly into the entrained down-flow gasifier by the pulverized wood banner. The pulverized wood is sieved through 60 mesh and supplied at rates of 19 and 27kg/h. The oxygen-carbon molar ratio (O/C) is employed as the operational condition instead of the air ratio. The maximum temperature achievable is over 1400K when the O/C is from 1.26 to 1.84. The results show that the gas composition is followed by the CO-shift reaction equilibrium. Therefore, the air-blown gasification model is developed based on the CO-shift reaction equilibrium. The simple gasification model agrees well with the experimental results. From calculations in large-scale units, the cold gas is able to achieve 80% efficiency in the air-blown gasification, when the woody biomass feedrate is over 1000kg/h and input air temperature is 700K. PMID:18653324

  4. ENTRAINMENT MODELS

    EPA Science Inventory

    This presentation presented information on entrainment models. Entrainment models use entrainment hypotheses to express the continuity equation. The advantage is that plume boundaries are known. A major disadvantage is that the problems that can be solved are rather simple. The ...

  5. [Characteristic of toxic risks of air pollution by chemical admixtures aboard the piloted orbital stations].

    PubMed

    Mukhamedieva, L N; Bogomolov, V V

    2009-01-01

    Trends in the chemical composition of air revealed by the sanitary-chemical and toxicological investigations in multifactorial ground-based tests and long-term space flights aboard the Salyut- 6, 7, Mir and the International space station have been used to deduce the chemical characteristic and to substantiate methods to and criteria for evaluation of toxic risks to space crews from air chemical pollution. Of particular concern were the toxic risks and crew protection during the first ingress to modules on the stage of station assembly in orbit, in the course of long-term missions, and in the event of acute exposure in off-nominal and emergency conditions. PMID:19711857

  6. Entrainment Heat Flux Computed with Lidar and Wavelet Technique in Buenos Aires During Last Chaitén Volcano Eruption

    NASA Astrophysics Data System (ADS)

    Pawelko, Ezequiel Eduardo; Salvador, Jacobo Omar; Ristori, Pablo Roberto; Pallotta, Juan Vicente; Otero, Lidia Ana; Quel, Eduardo Jaime

    2016-06-01

    At Lidar Division of CEILAP (CITEDEF-CONICET) a multiwavelength Raman-Rayleigh lidar optimized to measure the atmospheric boundary layer is being operated. This instrument is used for monitoring important aerosol intrusion events in Buenos Aires, such as the arrival of volcanic ashes from the Chaitén volcano eruption on May 2008. That was the first monitoring of volcanic ash with lidar in Argentina. In this event several volcanic ash plumes with high aerosol optical thickness were detected in the free atmosphere, affecting the visibility, surface radiation and therefore, the ABL evolution. In this work, the impact of ashes in entrainment flux ratio is studied. This parameter is obtained from the atmospheric boundary layer height and entrainment zone thickness using algorithms based on covariance wavelet transform.

  7. Two-phase numerical study of the flow field formed in water pump sump: influence of air entrainment

    NASA Astrophysics Data System (ADS)

    Bayeul-Lainé, A. C.; Simonet, S.; Bois, G.; Issa, A.

    2012-11-01

    In a pump sump it is imperative that the amount of non-homogenous flow and entrained air be kept to a minimum. Free air-core vortex occurring at a water-intake pipe is an important problem encountered in hydraulic engineering. These vortices reduce pump performances, may have large effects on the operating conditions and lead to increase plant operating costs.This work is an extended study starting from 2006 in LML and published by ISSA and al. in 2008, 2009 and 2010. Several cases of sump configuration have been numerically investigated using two specific commercial codes and based on the initial geometry proposed by Constantinescu and Patel. Fluent and Star CCM+ codes are used in the previous studies. The results, obtained with a structured mesh, were strongly dependant on main geometrical sump configuration such as the suction pipe position, the submergence of the suction pipe on one hand and the turbulence model on the other hand. Part of the results showed a good agreement with experimental investigations already published. Experiments, conducted in order to select best positions of the suction pipe of a water-intake sump, gave qualitative results concerning flow disturbances in the pump-intake related to sump geometries and position of the pump intake. The purpose of this paper is to reproduce the flow pattern of experiments and to confirm the geometrical parameter that influences the flow structure in such a pump. The numerical model solves the Reynolds averaged Navier-Stokes (RANS) equations and VOF multiphase model. STAR CCM+ with an adapted mesh configuration using hexahedral mesh with prism layer near walls was used. Attempts have been made to calculate two phase unsteady flow for stronger mass flow rates and stronger submergence with low water level in order to be able to capture air entrainment. The results allow the knowledge of some limits of numerical models, of mass flow rates and of submergences for air entrainment. In the validation of this

  8. Effect of high doses of chemical admixtures on the strength development and freeze-thaw durability of portland cement mortar

    NASA Astrophysics Data System (ADS)

    Korhonen, Charles J.

    This thesis examines the low-temperature strength development of portland cement concrete made with high doses of chemical admixtures dissolved in the mixing water and the possible beneficial effect of these admixtures on that concrete's long-term freeze-thaw durability. The literature shows that high doses of chemical admixtures can protect fresh concrete against freezing and that, under certain conditions, these admixtures can enhance the freeze-thaw durability of concrete. The challenge is that there are no acceptance standards in the U.S. that allow chemicals to be used to protect concrete against freezing. Also, the perception is that chemicals might somehow harm the concrete. This perception seems to be based on the fact that deicing salts, when applied to concrete pavement, cause roadways to scale away. This study investigated the effect of high doses of commercially available admixtures on fresh concrete while it gained strength at low temperature and on hardened concrete exposed to repeated cycles of freezing and thawing in a moist environment. The reason for studying off-the-shelf admixtures was that these materials are approved for use in concrete; they were already governed by their own set of standards. Four mortars were examined, each with a different cement and water content, when dosed with five commercial admixtures. This allowed the fresh mortar to gain appreciable strength when it was kept at nearly -10C. The admixtures also enhanced the freeze-thaw durability of the mortar, even when it was not air-entrained. Clearly, as the dosage of admixture increased beyond approximately 22% by weight of water, the mortar appeared to be unaffected by up to 700 cycles of freezing and thawing.

  9. Stratocumulus cloud deepening through entrainment

    NASA Technical Reports Server (NTRS)

    Randall, D. A.

    1984-01-01

    Under a substantial range of realistic conditions, stratocumulus cloud top entrainment is noted to either deepen an existing cloud layer or produce clouds in an unsaturated mixed layer, though the entrained air is warmer and drier than the mixed-layer air. These results, which apply irrespective of entrainment rate-determining mechanism, imply that the cloud top entrainment instability discussed by Randall (1980) and Deardorff (1980) does not necessarily destroy a layer cloud. Examples are given which include soundings, marine layer data, and simulation results produced by the UCLA general circulation model.

  10. Size distribution of oceanic air bubbles entrained in sea-water by wave-breaking

    NASA Technical Reports Server (NTRS)

    Resch, F.; Avellan, F.

    1982-01-01

    The size of oceanic air bubbles produced by whitecaps and wave-breaking is determined. The production of liquid aerosols at the sea surface is predicted. These liquid aerosols are at the origin of most of the particulate materials exchanged between the ocean and the atmosphere. A prototype was designed and built using an optical technique based on the principle of light scattering at an angle of ninety degrees from the incident light beam. The output voltage is a direct function of the bubble diameter. Calibration of the probe was carried out within a range of 300 microns to 1.2 mm. Bubbles produced by wave-breaking in a large air-sea interaction simulating facility. Experimental results are given in the form of size spectrum.

  11. Airborne & SAR Synergy Reveals the 3D Structure of Air Bubble Entrainment in Internal Waves and Frontal Zones

    NASA Astrophysics Data System (ADS)

    da Silva, J. C. B.; Magalhaes, J. M.; Batista, M.; Gostiaux, L.; Gerkema, T.; New, A. L.

    2013-03-01

    Internal waves are now recognised as an important mixing mechanism in the ocean. Mixing at the base of the mixed layer and in the seasonal thermocline affects the properties of those water masses which define the exchange of heat and freshwater between the atmosphere and ocean. The breaking of Internal Solitary Waves (ISWs) contributes significantly to turbulent mixing in the near-surface layers, through the continual triggering of instabilities as they propagate and shoal towards the coast or shallow topography. Here we report some results of the EU funded project A.NEW (Airborne observations of Nonlinear Evolution of internal Waves generated by internal tidal beams). The airborne capabilities to observe small scale structure of breaking internal waves in the near-shore zone has been demonstrated in recent studies (e.g. Marmorino et al., 2008). In particular, sea surface thermal signatures of shoaling ISWs have revealed the turbulent character of these structures in the form of surface “boil” features. On the other hand, some in situ measurements of internal waves and theoretical work suggest subsurface entrainment of air bubbles in the convergence zones of ISWs (Serebryany and Galybin, 2009; Grimshaw et al., 2010). We conducted airborne remote sensing observations in the coastal zone off the west Iberian Peninsula (off Lisbon, Portugal) using high resolution imaging sensors: LiDAR (Light Detection And Ranging), hyperspectral cameras (Eagle and Hawk) and thermal infrared imaging (TABI-320). These measurements were planned based on previous SAR observations in the region, which included also near-real time SAR overpasses (ESA project AOPT-2423 and TerraSAR-X project OCE-0056). The airborne measurements were conducted from board the NERC (Natural Environmental Research Centre) Do 228 aircraft in the summer of 2010. The TABI-320 thermal airborne broadband imager can distinguish temperature differences as small as one-twentieth of a degree and operates in the

  12. Performance of rice husk ash produced using a new technology as a mineral admixture in concrete

    SciTech Connect

    Nehdi, M.; Duquette, J.; El Damatty, A

    2003-08-01

    This article investigates the use of a new technique for the controlled combustion of Egyptian rice husk to mitigate the environmental concerns associated with its uncontrolled burning and provide a supplementary cementing material for the local construction industry. The reactor used provides efficient combustion of rice husk in a short residency time via the suspension of processed particles by jets of a process air stream that is forced though stationary angled blades at high velocity. Investigations on the rice husk ash (RHA) thus produced included oxide analysis, X-ray diffraction, carbon content, grindability, water demand, pozzolanic activity index, surface area, and particle size distribution measurements. In addition, concrete mixtures incorporating various proportions of silica fume (SF) and Egyptian RHA (EG-RHA) produced at different combustion temperatures were made and compared. The workability, superplasticizer and air-entraining admixture requirements, and compressive strength at various ages of these concrete mixtures were evaluated, and their resistance to rapid chloride penetrability and deicing salt surface scaling were examined. Test results indicate that contrary to RHA produced using existing technology, the superplasticizer and air-entraining agent requirements did not increase drastically when the RHA developed in this study was used. Compressive strengths achieved by concrete mixtures incorporating the new RHA exceeded those of concretes containing similar proportions of SF. The resistance to surface scaling of RHA concrete was better than that of concrete containing similar proportions of SF. While the chloride penetrability was substantially decreased by RHA, it remained slightly higher than that achieved by SF concrete.

  13. The development and testing of an air/steam blown entrained flow gasifier fuelled with cotton waste and sawdust

    SciTech Connect

    Joseph, S.; Denniss, T.; Lipscombe, R.

    1996-12-31

    Australia produces approximately 50 million tonnes of biomass residue per year. Much of this residue is either burnt in the fields, at factory sites or disposed of in land fill. A recent study, sponsored by the Energy Research and Development Corporation (ERDC), has concluded that there is a potential to generate at least 2000MW of electricity per year from this waste. Research carried out in 1990 by Biomass Energy Services and Technology Pty (BEST) indicated that gasification power generating equipment with electrical outputs of 1-5 MW and installed capital costs of US$1200 per kW could be viable at present electricity prices. At that time equipment was not commercially available at the target price and thus an R & D programme was undertaken to develop gasification equipment suitable for Australian conditions. Following a detailed literature search and design study it appeared that an entrained flow (vortex) gasifier could handle the range of fuels available and could be produced at a price that would ensure its commercial viability. In this paper the design will be outlined and the mathematic modeling of the flow and the results of the tests undertaken will be presented. An outline of the demonstration program to be undertaken next year at a cotton gin will be given, along with the preliminary economic analysis that has been carried out.

  14. ENTRAINMENT BY LIGAMENT-CONTROLLED EFFERVESCENT ATOMIZER-PRODUCED SPRAYS

    EPA Science Inventory

    Entrainment of ambient air into sprays produced by a new type of effervescent atomizer is reported. Entrainment data were obtained using a device similar to that described by Ricou & Spalding (1961). Entrainment data were analyzed using the model of Bush & Sojka (1994), in concer...

  15. Aerosol entrainment from a sparged non-Newtonian slurry.

    PubMed

    Fritz, Brad G

    2006-08-01

    Previous bench-scale experiments have provided data necessary for the development of empirical models that describe aerosol entrainment from bubble bursting. However, previous work has not been extended to non-Newtonian liquid slurries. Design of a waste treatment plant on the Hanford Site in Washington required an evaluation of the applicability of these models outside of their intended range. For this evaluation, aerosol measurements were conducted above an air-sparged mixing tank filled with simulated waste slurry possessing Bingham plastic rheological properties. Three aerosol-size fractions were measured at three sampling heights and for three different sparging rates. The measured entrainment was compared with entrainment models. One model developed based on bench-scale air-water experiments agreed well with measured entrainment. Another model did not agree well with the measured entrainment. It appeared that the source of discrepancy between measured and modeled entrainment stemmed from application beyond the range of data used to develop the model. A possible separation in entrainment coefficients between air-water and steam-water systems was identified. A third entrainment model was adapted to match experimental conditions and fit a posteri to the experimental data, resulting in a modified version that resulted in estimated entrainment rates similar to the first model. PMID:16933643

  16. Human Population Admixture in Asia

    PubMed Central

    2012-01-01

    Genetic admixture in human, the result of inter-marriage among people from different well-differentiated populations, has been extensively studied in the New World, where European colonization brought contact between peoples of Europe, Africa, and Asia and the Amerindian populations. In Asia, genetic admixing has been also prevalent among previously separated human populations. However, studies on admixed populations in Asia have been largely underrepresented in similar efforts in the New World. Here, I will provide an overview of population genomic studies that have been published to date on human admixture in Asia, focusing on population structure and population history. PMID:23166524

  17. New advanced shotcrete admixtures: Internal curing

    SciTech Connect

    Melbye, T.A.

    1995-12-31

    Tunnels and other underground construction projects have one of the worst curing conditions due to the ventilation that blows continuously dry (cold or hot) air into the tunnel. It can be compared with concrete exposed to a windy area. One would think that tunnels have ideal curing conditions with high humidity (water leakage), no wind and no sun exposure. However, this is not the case. MBT has developed a new system for more efficient and secure curing of wet shotcrete, repair mortars as well as concrete. Internal curing means that a special admixture is added to the concrete/mortar during batching as a normal admixture. This admixture produces an internal barrier in the shotcrete/concrete which secures safer hydration and better chemical resistance than the application of conventional curing agents. The benefits resulting from the new technology are impressive: The time consuming application and, in the case of various shotcrete layers, removal of curing agents are no longer necessary; curing is guaranteed from the very beginning of hydration; and there is no negative influence on bonding between layers. As a consequence of th is optimum curing effect, all other shotcrete characteristics are improved: density, final strengths, freeze/thaw and chemical resistances, watertightness, less cracking and shrinkage. In addition, MEYCO TCC 735 also improves pumpability and workability of shotcrete, even with low-grade aggregates. It particularly improves the pumpability of steel fiber reinforced shotcrete mixes. In combination with the MEYCO TCC system it contrives to even increase the beneficial effects of the slump killing system by further improving fiber orientation, reducing fiber rebound and thus raising toughness values.

  18. Increasing jet entrainment, mixing and spreading

    DOEpatents

    Farrington, Robert B.

    1994-01-01

    A free jet of air is disturbed at a frequency that substantially matches natural turbulences in the free jet to increase the entrainment, mixing, and spreading of air by the free jet, for example in a room or other enclosure. The disturbances are created by pulsing the flow of air that creates the free jet at the desired frequency. Such pulsing of the flow of air can be accomplished by sequentially occluding and opening a duct that confines and directs the flow of air, such as by rotating a disk on an axis transverse to the flow of air in the duct.

  19. Increasing jet entrainment, mixing and spreading

    DOEpatents

    Farrington, R.B.

    1994-08-16

    A free jet of air is disturbed at a frequency that substantially matches natural turbulences in the free jet to increase the entrainment, mixing, and spreading of air by the free jet, for example in a room or other enclosure. The disturbances are created by pulsing the flow of air that creates the free jet at the desired frequency. Such pulsing of the flow of air can be accomplished by sequentially occluding and opening a duct that confines and directs the flow of air, such as by rotating a disk on an axis transverse to the flow of air in the duct. 11 figs.

  20. Topological Signatures for Population Admixture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Topological Signatures for Population AdmixtureDeniz Yorukoglu1, Filippo Utro1, David Kuhn2, Saugata Basu3 and Laxmi Parida1* Abstract Background: As populations with multi-linear transmission (i.e., mixing of genetic material from two parents, say) evolve over generations, the genetic transmission...

  1. An observational study of entrainment rate in deep convection

    SciTech Connect

    Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; Zhang, Guang Jun; Liu, Yangang

    2015-09-22

    This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal, gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.

  2. An observational study of entrainment rate in deep convection

    DOE PAGESBeta

    Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; Zhang, Guang Jun; Liu, Yangang

    2015-09-22

    This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal,more » gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.« less

  3. Entrainment and Interfacial Stability in Capillary - Heat Pipes

    NASA Astrophysics Data System (ADS)

    Kim, Bong Hun

    Entrainment phenomena in capillary-driven heat pipes were studied and both analytical and experimental approaches were utilized to identify and better understand the parameters that govern the entrainment of liquid in operating heat pipes. Two experimental investigations, i.e., an aerodynamic simulation and a heat pipe experiment, were conducted using an air-water test channel and a high power heat pipe, respectively. The air-water experiment was used to study the effects of the vapor velocity and wick dimensions on the entrainment phenomenon in heat pipes. The heat pipe experiment was designed to verify the existence of the various modes of entrainment and measure the corresponding entrainment limits. From the comparison of critical velocities obtained in these two experiments, the effectiveness of previous aerodynamic simulations (Ishii and Grolmes, 1975; Matveev et al., 1977) was examined. For both experiments, entrainment was detected by various methods and classified into representative types according to the relative position of the liquid interface to the wick structure and operating conditions. Results of the two experiments were compared with those obtained from previous investigations presented by Cotter (1967), Tien and Chung (1979) and Prenger and Kemme (1981), etc. In addition, the entrainment limit data were theoretically verified using a computer model designed to predict the maximum performance for the given operating conditions. Finally, the entrainment phenomena observed in both the air-water and steam-water experiments were examined from a physical perspective using hydrodynamic instability theories (Kelvin, 1871; Jeffreys, 1926; Miles, 1960).

  4. Ancient Admixture in Human History

    PubMed Central

    Patterson, Nick; Moorjani, Priya; Luo, Yontao; Mallick, Swapan; Rohland, Nadin; Zhan, Yiping; Genschoreck, Teri; Webster, Teresa; Reich, David

    2012-01-01

    Population mixture is an important process in biology. We present a suite of methods for learning about population mixtures, implemented in a software package called ADMIXTOOLS, that support formal tests for whether mixture occurred and make it possible to infer proportions and dates of mixture. We also describe the development of a new single nucleotide polymorphism (SNP) array consisting of 629,433 sites with clearly documented ascertainment that was specifically designed for population genetic analyses and that we genotyped in 934 individuals from 53 diverse populations. To illustrate the methods, we give a number of examples that provide new insights about the history of human admixture. The most striking finding is a clear signal of admixture into northern Europe, with one ancestral population related to present-day Basques and Sardinians and the other related to present-day populations of northeast Asia and the Americas. This likely reflects a history of admixture between Neolithic migrants and the indigenous Mesolithic population of Europe, consistent with recent analyses of ancient bones from Sweden and the sequencing of the genome of the Tyrolean “Iceman.” PMID:22960212

  5. Physiology of circadian entrainment.

    PubMed

    Golombek, Diego A; Rosenstein, Ruth E

    2010-07-01

    Mammalian circadian rhythms are controlled by endogenous biological oscillators, including a master clock located in the hypothalamic suprachiasmatic nuclei (SCN). Since the period of this oscillation is of approximately 24 h, to keep synchrony with the environment, circadian rhythms need to be entrained daily by means of Zeitgeber ("time giver") signals, such as the light-dark cycle. Recent advances in the neurophysiology and molecular biology of circadian rhythmicity allow a better understanding of synchronization. In this review we cover several aspects of the mechanisms for photic entrainment of mammalian circadian rhythms, including retinal sensitivity to light by means of novel photopigments as well as circadian variations in the retina that contribute to the regulation of retinal physiology. Downstream from the retina, we examine retinohypothalamic communication through neurotransmitter (glutamate, aspartate, pituitary adenylate cyclase-activating polypeptide) interaction with SCN receptors and the resulting signal transduction pathways in suprachiasmatic neurons, as well as putative neuron-glia interactions. Finally, we describe and analyze clock gene expression and its importance in entrainment mechanisms, as well as circadian disorders or retinal diseases related to entrainment deficits, including experimental and clinical treatments. PMID:20664079

  6. DEVELOPMENT OF SUPERIOR ENTRAINMENT SEPARATORS

    EPA Science Inventory

    An experimental and theoretical program was carried out to develop an improved design for entrainment separators for scrubbers. The problems of separation efficiency, suspended solids deposition and plugging of the entrainment separator were of primary concern. A pilot scale entr...

  7. Holes and Entrainment in Stratocumulus.

    NASA Astrophysics Data System (ADS)

    Gerber, H.; Frick, G.; Malinowski, S. P.; Brenguier, J.-L.; Burnet, F.

    2005-02-01

    Aircraft flights through stratocumulus clouds (Sc) during the Dynamics and Chemistry of Marine Stratocumulus II (DYCOMS-II) study off the California coast found narrow in-cloud regions with less liquid water content (LWC) and cooler temperatures than average background values. The regions are named cloud holes and are assumed to be a result of water evaporated by the entrainment of dryer air from above the Sc. While such features have been noted previously, this study provided a unique opportunity to investigate in much greater detail the nature of the holes, as well as their relationship to the entrainment rate, because high-speed temperature and LWC probes with maximum spatial resolution of 10 cm were flown together for the first time. Nine long-duration flights were made through mostly unbroken Sc for which conditional sampling was used to identify the location and size of the holes. The holes are concentrated near cloud top, their average width near cloud top is about 5 m, their relative length distribution is nearly constant for all flights, and they can penetrate hundreds of meters deep into the Sc before being lost by mixing. Entrainment velocities at cloud top are estimated from measurements of fluxes of reduced LWC and vapor mixing ratios in holes, the fraction of cloud area covered by holes, and the total water jump between cloud top and the free atmosphere. Rates as large as 10 mm s-1 are found for nocturnal flights, and these rates are about 3 times larger than for daytime flight segments. The rates correlate best with the size of the buoyancy jump above the Sc; the present conditional-sampling approach for measuring the rates gives larger rates than the "flux jump" rates determined by others for the same flights by a factor of about 2. The stability criterion for all Sc predicts thinning and breakup of the Sc, which does not occur. The minimal amount of cloud-top evaporative cooling caused by entrainment contributes little to the top-down convection

  8. Entrainment and mixing mechanism in monsoon clouds

    NASA Astrophysics Data System (ADS)

    Bera, Sudarsan; Prabhakaran, Thara; Pandithurai, Govindan; Brenguier, Jean-Louis

    2015-04-01

    Entrainment and consequent mixing impacts the cloud microphysical parameters and droplet size distribution (DSD) significantly which are very important for cloud radiative properties and the mechanism for first rain drop formation. The entrainment and mixing mechanisms are investigated in this study using in situ observations in warm cumulus clouds over monsoon region. Entrainment is discussed in the framework of the homogeneous and inhomogeneous mixing concepts and their effects on cloud droplet size distribution, number concentration, liquid water content and mean radius are described. The degree of homogeneity increases with droplet number concentration and adiabatic fraction, indicating homogeneous type mixing in the cloud core where dilution is less. Inhomogeneous mixing is found to be a dominating process at cloud edges where dilution is significant. Cloud droplet size distribution (DSD) is found to shift towards lower sizes during a homogeneous mixing event in the cloud core whereas spectral width of DSD decreases due to inhomogeneous mixing at cloud edges. Droplet size spectra suggests that largest droplets are mainly formed in the less diluted cloud core while diluted cloud edges have relatively smaller droplets, so that raindrop formation occurs mainly in the core of the cloud. The origin of the entrained parcels in deep cumulus clouds is investigated using conservative thermodynamical parameters. The entrained parcels originate from a level close to the observation level or slightly below through lateral edges. Cloud edges are significantly diluted due to entrainment of sub-saturated environmental air which can penetrate several hundred meters inside the cloud before it gets mixed completely with the cloud mass. Less diluted parcels inside the cloud core originates from a level much below the cloud base height. Penetrating downdraft from cloud top is seldom observed at the observation level and strong downdrafts may be attributed to in-cloud oscillation

  9. Mesler entrainment in alcohols

    NASA Astrophysics Data System (ADS)

    Saylor, J. R.; Sundberg, R. K.

    2012-11-01

    When a drop impacts a flat surface of the same liquid at an intermediate velocity, the impact can result in the formation of a very large number of very small bubbles. At lower velocities, drops bounce or float, and at larger velocities a single bubble forms, or there is a splash. The formation of large numbers of small bubbles during intermediate velocity impacts is termed Mesler entrainment and its controlling mechanism is poorly understood. Existing research has shown that Mesler entrainment is highly irreproducible when water is the working fluid, and very reproducible when silicone oil is the working fluid. Whether this is because water is problematic, or silicone oil is uniquely well-suited, is unclear. To answer this question, experiments were conducted using three different alcohols. The results of these experiments were very reproducible for all alcohols tested, suggesting that there is something unique about water which accounts for its lack of reproducibility. The data from these experiments were also used to develop a dimensionless group that quantifies the conditions under which Mesler entrainment occurs. This dimensionless group is used to provide insight into the mechanism of this unique method of bubble formation.

  10. Defining the Entrainment Zone in Stratocumulus-topped Boundary Layers

    NASA Astrophysics Data System (ADS)

    Wang, Q.; Zhou, M.; Kalogiros, J. A.; Lenschow, D. H.; Dai, C.; Wang, S.

    2010-12-01

    The presence of an entrainment zone near the top of the stratocumulus-topped boundary layers has been identified by many early studies. However, the definition of the entrainment zone was rather vague. We have examined the fine vertical variations of cloud liquid water content, wind, temperature and humidity near the stratocumulus top and developed a new method to identify the entrainment zone objectively. Aircraft measurements from various field projects in stratocumulus-topped boundary layers are used, taking advantage of the fast sampling capability of many of the aircraft sensors. Because of the inhomogeneous mixing of two air masses with distinctively different thermodynamic properties, the magnitude of temperature perturbations within the entrainment zone is significantly larger than those above or below. This characteristics is used to define the upper and lower boundaries of the entrainment zone using a wavelet spectra analyses. The definition of the entrainment zone is further evaluated by the presence of a linear mixing line through mixing line analyses. Various other interfaces at the cloud top are also examined, including the cloud interface, temperature interface (inversion), and moisture interface. The heights of these interfaces are examined relative to the height of the entrainment zone. This study also systematically revealed the presence of turbulence above the local cloud top and/or above the entrainment zone. Wind shear near the cloud top is one possible source that generated local turbulence. Other potential sources of turbulence will also be discussed.

  11. The role of entrainment by falling raindrops in microbursts

    NASA Technical Reports Server (NTRS)

    Krueger, Steven K.

    1988-01-01

    The numerical model of Krueger et al. (1986) for dry microburst simulations is used to study the role of entrainment by falling raindrops. Two series of numerical simulations were conducted: a control series, and a series with the raindrop fall speed set to zero so that the rain moved with the air instead of falling through it. The results show that entrainment due to falling raindrops helps microbursts with large raindrop mixing ratios to form in stable stratifications. It is found that entrainment appears to contribute to the small spatial and temporal scales that characterize microburst outflows.

  12. Aerosol entrainment from a sparged non-Newtonian slurry

    SciTech Connect

    Fritz, Brad G.

    2006-08-01

    Aerosol measurements were conducted above a half-scale air sparged mixing tank filled with simulated waste slurry. Three aerosol size fractions were measured at three sampling heights at three different sparging rates using a filter based ambient air sampling technique. Aerosol concentrations in the head space above the closed tank demonstrated a wide range, varying between 97 ?g m-3 for PM2.5 and 5650 ?g m-3 for TSP. The variation in concentrations was a function of sampling heights, size fraction and sparging rate. Measured aerosol entrainment coefficients showed good agreement with existing entrainment models. The models evaluated generally over predicted the entrainment, but were within a factor of two of the measured entrainment. This indicates that the range of applicability of the models may be extendable to include sparged slurries with Bingham plastic rheological properties.

  13. Entrainment region phenomena for a large plane shear layer

    NASA Technical Reports Server (NTRS)

    Ali, S. K.; Klewicki, C. L.; Disimile, P. J.; Lawson, I.; Foss, J. F.

    1985-01-01

    The subatmospheric test section of the present free shear layer facility allows the entrainment air to be introduced with a negligible disturbance level. The very low frequency oscillations, which are prominently observed in the entrainment stream and which are present throughout the shear layer, are attributed to an inherent instability in the transition from a boundary layer to a free shear layer state. The basic features of the disturbance field are documented herein.

  14. High-Resolution Entrainment in Stratocumulus During the POST Campaign

    NASA Astrophysics Data System (ADS)

    Gerber, H. E.

    2012-12-01

    In July and August of 2008 an NSF-supported field campaign called POST (Physics of Stratocumulus Top) was conducted off the California coast using the fully-instrumented Twin Otter aircraft from the Naval Post Graduate School. POST provided the first opportunity to closely co-locate on an aircraft high-rate and time synchronized microphysics (PVM; LWC and effective radius) and thermodynamics (UFT; Ultra-Fast Temperature) probes and a gust probe to produce measurements of entrainment fluxes and features over entrainment scales thought to be important in warm stratocumulus (Sc). This combination of probes permitted investigating the properties of individual entrained parcels Seventeen flights were conducted during POST in a quasi-Lagrangian fashion in largely unbroken stratocumulus. The horizontal fight path was adjusted to follow the mean air velocity in the Sc. The vertical flight path concentrated on flying between 100-m above and below the cloud-top interface; and some additional profiles were flown to various higher and lower levels where flux runs were made. This presentation describes the analysis of this unique and excellent data set including the following: The data permitted testing Lilly's classical theory for the entrainment velocity where its application requires strong jumps of temperature and moisture across the inversion located above cloud top, a linear flux of the entrained scalar below cloud top, and entrained parcels that descend. All flights showed Sc with wind shear and mixing at cloud top with some strong enough to dissipate the Sc. The relationship between shear and entrainment velocity is described. The pdf of the horizontal size of entrainment parcels vs entrainment flux is established for all flights to help in choosing grid-sizes for modeling. High -resolution in-cloud temperature and LWC measurements in entrained parcels reveal the relative importance of radiative cooling vs cooling by liquid water evaporation in causing buoyancy reversal

  15. The influence of Kr, CO2, and iso-C4H8 admixtures on the time of the formation of a stable flame front in mixtures of natural gas and isobutylene with oxygen and hydrogen with air under initiation with a spark discharge

    NASA Astrophysics Data System (ADS)

    Rubtsov, N. M.; Seplyarskii, B. S.; Chernysh, V. I.; Tsvetkov, G. I.

    2010-05-01

    High-speed color filming was used to study laminar spherical flame propagation at the initial stage in preliminarily mixed stoichiometric mixtures of natural gas and isobutylene with oxygen containing krypton and carbon dioxide and in hydrogen-air mixtures at atmospheric pressure in a bomb with a constant volume. Under experimental conditions ( T 0 = 298 K, p 0 = 100 torr, spark discharge energy E 0 = 0.91 J), the dilution of mixtures with Kr and CO2 increased the time of formation of a stable flame front by more than 10 times. The introduction of a small chemically active admixture (1.2% isobutylene) into a stoichiometric mixture of hydrogen and air sharply increased the time of formation of a stable flame front, which was evidence of an important role played by the chemical mechanism of the reaction in the formation of the combustion field.

  16. A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 2; Simulations of Cumulonimbus Clouds

    NASA Technical Reports Server (NTRS)

    Cohen, Charles

    1998-01-01

    Deep cumulonimbus clouds are simulated using a model that makes accurate diagnoses of entrainment and detrainment rates and of the properties of entrained and detrained air. Clouds generated by a variety of initial thermodynamic soundings are compared. In the simulations, updraft entrainment rates are large near and above cloud base, through the entire depth of the conditionally unstable layer. Stronger updrafts in a more unstable environment are better able to entrain relatively undisturbed environmental air, while weaker updrafts can entrain only air that has been modified by the clouds. When the maximum buoyancy is large, the updraft includes parcels with a wide range of buoyancies, while weaker clouds are more horizontally uniform. Strong downdrafts originate from levels at which updrafts detrain, and their mass flux depends on the mass flux of the updraft. The magnitude of mixing between cloud and environment, not the entrainment rate, varies inversely with the cloud radius. How much of the mixed air is entrained depends on the buoyancy.

  17. Fluid Dynamics of Pressurized, Entrained Coal Gasifiers

    SciTech Connect

    1997-12-31

    Pressurized, entrained gasification is a promising new technology for the clean and efficient combustion of coal. Its principle is to operate a coal gasifier at a high inlet gas velocity to increase the inflow of reactants, and at an elevated pressure to raise the overall efficiency of the process. Unfortunately, because of the extraordinary difficulties involved in performing measurements in hot, pressurized, high-velocity pilot plants, its fluid dynamics are largely unknown. Thus the designer cannot predict with certainty crucial phenomena like erosion, heat transfer and solid capture. In this context, we are conducting a study of the fluid dynamics of Pressurized Entrained Coal Gasifiers (PECGs). The idea is to simulate the flows in generic industrial PECGs using dimensional similitude. To this end, we employ a unique entrained gas-solid flow facility with the flexibility to recycle -rather than discard- gases other than air. By matching five dimensionless parameters, suspensions in mixtures of helium, carbon dioxide and sulfur hexafluoride simulate the effects of pressure and scale-up on the fluid dynamics of PECGS. Because it operates under cold, atmospheric conditions, the laboratory facility is ideal for detailed measurements. These activities are conducted with Air Products & Chemicals, Inc., which is a member of a consortium that includes Foster Wheeler and Deutsche Babcock Energie- und Umwelttechnik AG.

  18. Investigations of cumulus entrainment rates through remotely-sensed observations

    NASA Astrophysics Data System (ADS)

    Wagner, T. J.; Turner, D. D.; Berg, L. K.

    2010-12-01

    The entrainment of environmental air into cumulus impacts the radiative, microphysical, and thermodynamic characteristics of the cloud, and by extension, the environment. A need for a robust method to observe entrainment rate without the use of in situ observations has lead to the development of an algorithm to retrieve entrainment rate remotely. Thermodynamic profiles are obtained from the suite of ground-based instruments located at the Southern Great Plains (SGP) site of the United States Department of Energy's Atmospheric Radiation Measurement (ARM) Climate Research Facility. These profiles are used as inputs into the Entrainment Mixing Parcel Model (EMPM), which treats entrainment as a series of discrete mixing events. Output from EMPM is used to calculate quantities that can be observed from the surface, including effective radius and liquid water path. The entrainment rate is adjusted iteratively using Gauss-Newton optimal estimation until convergence with observations is reached. This algorithm currently retrieves the entrainment rate of individual cumulus clouds and shows good agreement with aircraft-based observations.

  19. Lidar measurements of the atmospheric entrainment zone and the potential temperature jump across the top of the mixed layer

    NASA Technical Reports Server (NTRS)

    Boers, R.; Eloranta, E. W.

    1986-01-01

    Lidar data of the atmospheric entrainment zone from six days of clear air convection obtained in central Illinois during July 1979 are presented. A new method to measure the potential temperature jump across the entrainment zone based on only one temperature sounding and continuous lidar measurements of the mixed layer height is developed. An almost linear dependence is found between the normalized entrainment rate and the normalized thickness of the entrainment zone.

  20. Power plant intake entrainment analysis

    SciTech Connect

    Edinger, J.E.; Kolluru, V.S.

    2000-04-01

    Power plant condenser cooling water intake entrainment of fish eggs and larvae is becoming an issue in evaluating environmental impacts around the plants. Methods are required to evaluate intake entrainment on different types of water bodies. Presented in this paper is a derivation of the basic relationships for evaluating entrainment from the standing crop of fish eggs and larvae for different regions of a water body, and evaluating the rate of entrainment from the standing crop. These relationships are coupled with a 3D hydrodynamic and transport model that provides the currents and flows required to complete the entrainment evaluation. Case examples are presented for a simple river system, and for the more complex Delaware River Estuary with multiple intakes. Example evaluations are made for individual intakes, and for the cumulative impacts of multiple intakes.

  1. The entraining moist boundary layer

    NASA Technical Reports Server (NTRS)

    Randall, D. A.

    1978-01-01

    A unified theory of entrainment into the planetary boundary layer is presented. It is assumed that the rates of buoyant and shear production of turbulence kinetic energy can be determined in terms of the entrainment mass flux. An expression is derived from the conservation law for turbulence kinetic energy, which, with the introduction of an empirical parameter, can be used together with a second relation between turbulence kinetic energy and the turbulence velocity scale to obtain the mass entrainment flux. The theory provides descriptions of storage-limited entrainment, buoyancy-limited entrainment into a clear mixed layer, and shallowing. It has been incorporated into a simulation of Day 33 of the Wangara experiment using a simple mixed layer model.

  2. The Macroscopic Entrainment Processes of Simulated Cumulus Ensemble. Part II: Testing the Entraining-Plume Model.

    NASA Astrophysics Data System (ADS)

    Lin, Chichung; Arakawa, Akio

    1997-04-01

    According to Part I of this paper, it seems that ignoring the contribution from descendent cloud air in a cloud model for cumulus parameterization (CMCP), such as the spectral cumulus ensemble model in the Arakawa-Schubert parameterization, is an acceptable simplification for tropical deep convection. Since each subensemble in the spectral cumulus ensemble model is formally analogous to an entraining plume, the latter is examined using the simulated data from a cloud-resolving model (CRM). The authors first follow the analysis procedure of Warner. With the data from a nonprecipitating experiment, the authors show that the entraining-plume model cannot simultaneously predict the mean liquid water profile and cloud top height of the clouds simulated by the CRM. However, the mean properties of active elements of clouds, which are characterized by strong updrafts, can be described by an entraining plume of similar top height.With the data from a precipitating experiment, the authors examine the spectral cumulus ensemble model using the Paluch diagram. It is found that the spectral cumulus ensemble model appears adequate if different types of clouds in the spectrum are interpreted as subcloud elements with different entrainment characteristics. The resolved internal structure of clouds can thus be viewed as a manifestation of a cloud spectrum. To further investigate whether the fractional rate of entrainment is an appropriate parameter for characterizing cloud types in the spectral cumulus ensemble model, the authors stratify the simulated saturated updrafts (subcloud elements) into different types according to their eventual heights and calculate the cloud mass flux and mean moist static energy for each type. Entrainment characteristics are then inferred through the cloud mass flux and in-cloud moist static energy. It is found that different types of subcloud elements have distinguishable thermodynamic properties and entrainment characteristics. However, for each cloud

  3. Mechanistic modeling and correlations for pool-entrainment phenomenon

    SciTech Connect

    Kataoka, I.; Ishii, M.

    1983-04-01

    Entrainment from a liquid pool with boiling or bubbling is of considerable practical importance in safety evaluation of nuclear reactor under off-normal transients or accidents such as loss-of-coolant and loss-of-flow accidents. Droplets which are suspended from a free surface are partly carried away by streaming gas and partly returned back to free surface by the gravity. A correlation is developed for the pool entrainment amount based on simple mechanistic modeling and a number of data. This analysis reveals that there exist three regions of entrainment in the axial direction from a pool surface. In the first region (near surface region), entrainment is independent of height and gas velocity. In the second region (momentum controlled region), the amount of entrainment decreases with increasing height from the free surface and increases with increasing gas velocity. In the third region (deposition controlled region), the entrainment increases with increasing height due to deposition of droplets. The present correlation agrees well with a large number of experimental data over a wide range of pressure for air-water and steam-water systems.

  4. Investigating the Sensitivity of Model Intraseasonal Variability to Minimum Entrainment

    NASA Astrophysics Data System (ADS)

    Hannah, W. M.; Maloney, E. D.

    2008-12-01

    Previous studies have shown that using a Relaxed Arakawa-Schubert (RAS) convective parameterization with appropriate convective triggers and assumptions about rain re-evaporation produces realistic intraseasonal variability. RAS represents convection with an ensemble of clouds detraining at different heights, each with different entrainment rate, the highest clouds having the lowest entrainment rates. If tropospheric temperature gradients are weak and boundary layer moist static energy is relatively constant, then by limiting the minimum entrainment rate deep convection is suppressed in the presence of dry tropospheric air. This allows moist static energy to accumulate and be discharged during strong intraseasonal convective events, which is consistent with the discharge/recharge paradigm. This study will examine the sensitivity of intra-seasonal variability to changes in minimum entrainment rate in the NCAR-CAM3 with the RAS scheme. Simulations using several minimum entrainment rate thresholds will be investigated. A frequency-wavenumber analysis will show the improvement of the MJO signal as minimum entrainment rate is increased. The spatial and vertical structure of MJO-like disturbances will be examined, including an analysis of the time evolution of vertical humidity distribution for each simulation. Simulated results will be compared to observed MJO events in NCEP-1 reanalysis and CMAP precipitation.

  5. Entrainment across density interfaces

    NASA Astrophysics Data System (ADS)

    Sanchez, M. A.; Carrillo, A.; Mahjoub, O. B.

    2010-05-01

    The structure of non-homogeneous turbulence affected by stratification and rotation is investigated both by means of laboratory and numerical experiments. The experiments investigate zero mean flow across a stably stratified density interface and are used to quantify the entrainment, the mixing efficiency and different types of dominant instability and the topological aspects of the turbulent cascades detected both horizontally and vertically [1,2]. Grid turbulence in a rotating stratified two layer system is measured with PIV as well as with sonic velocimetry. Observations of the horizontal and vertical velocity energy spectra as well as the structure functions are used to estimate local mixedness, entrainment and intermittency [3,4]. The method of estimation of the average eddy diffusivity from the time series images of a sharp density interface marked by fluoresceine also take anisotropy into account. but on the long run, horizontal ( and 2D type flow such as [5]) flow directions will average out so using a single integral length scale defined in Sanchez and Redondo(1998) varying in height will be enough together with the internal frequency. The method of calculating vertical fluxes in time allows to estimate different intermittency parameters as a function of local instability e.g. Kelvin/Helmholtz, Rayleigh-Taylor or Holbmoe[6-8]. Different concentration interfaces show different fractal dimensions, that are also a power function of the local Richardson number, this may be due to different levels of intermittency and thus different spectra, which are not necessarily inertial nor in equilibrium [8,9]. [1] Sanchez M.A. and Redondo J.M.Observations from Grid Stirred Turbulence. Applied Scientific Research 59, 191-204. 1998. [2] Redondo, J.M. and Cantalapiedra I.R. Mixing in Horizontally Heterogeneous Flows . Jour. Flow Turbulence and Combustion. 51, 217-222. 1993. [3] Castilla R, Redondo J.M., Gamez P.J., Babiano A. Coherent vortices and Lagrangian Dynamics in 2D

  6. Sulfate attack on concrete with mineral admixtures

    SciTech Connect

    Irassar, E.F.; Di Maio, A.; Batic, O.R.

    1996-01-01

    The sulfate resistance of concretes containing fly ash, natural pozzolan and slag is investigated in a field test in which concrete specimens were half-buried in sulfate soil for five years. Mineral admixtures were used as a partial replacement for ordinary portland cement (C{sub 3}A = 8.5%), and the progress of sulfate attack was evaluated by several methods (visual rating, loss in mass, dynamic modulus, strength, X-ray analysis). Results of this study show that mineral admixtures improved the sulfate resistance when the concrete is buried in the soil. However, concretes with high content of mineral admixtures exhibit a greater surface scaling over soil level due to the sulfate salt crystallization. In this zone, capillary suction of concrete is the main mechanism of water and salt transportation. Concrete with 20% fly ash provides an integral solution for half-buried structures.

  7. Dry air entrainment into convective clouds

    NASA Technical Reports Server (NTRS)

    Telford, J. W.

    1977-01-01

    A systematic approach to the study of atmospheric turbulent motion is discussed in terms of weather modification. The background of cloud physics, and the mixing process are described. A zero-g study is proposed to enable the basic experimental data to be collected so that theory may be developed to generalize results for practical applications.

  8. Estimation of convective entrainment properties from a cloud-resolving model simulation during TWP-ICE

    NASA Astrophysics Data System (ADS)

    Zhang, Guang J.; Wu, Xiaoqing; Zeng, Xiping; Mitovski, Toni

    2015-12-01

    The fractional entrainment rate in convective clouds is an important parameter in current convective parameterization schemes of climate models. In this paper, it is estimated using a 1-km-resolution cloud-resolving model (CRM) simulation of convective clouds from TWP-ICE (the Tropical Warm Pool-International Cloud Experiment). The clouds are divided into different types, characterized by cloud-top heights. The entrainment rates and moist static energy that is entrained or detrained are determined by analyzing the budget of moist static energy for each cloud type. Results show that the entrained air is a mixture of approximately equal amount of cloud air and environmental air, and the detrained air is a mixture of ~80 % of cloud air and 20 % of the air with saturation moist static energy at the environmental temperature. After taking into account the difference in moist static energy between the entrained air and the mean environment, the estimated fractional entrainment rate is much larger than those used in current convective parameterization schemes. High-resolution (100 m) large-eddy simulation of TWP-ICE convection was also analyzed to support the CRM results. It is shown that the characteristics of entrainment rates estimated using both the high-resolution data and CRM-resolution coarse-grained data are similar. For each cloud category, the entrainment rate is high near cloud base and top, but low in the middle of clouds. The entrainment rates are best fitted to the inverse of in-cloud vertical velocity by a second order polynomial.

  9. Estimating venous admixture using a physiological simulator.

    PubMed

    Hardman, J G; Bedforth, N M

    1999-03-01

    Estimation of venous admixture in patients with impaired gas exchange allows monitoring of disease progression, efficacy of interventions and assessment of the optimal inspired oxygen fraction. A pulmonary artery catheter allows accurate measurement, although the associated risks preclude its use solely for estimation of venous admixture. Non-invasive methods require assumed values for physiological variables. Many of the required data (e.g. haemoglobin concentration (Hb), base excess, inspired oxygen fraction, arterial oxygen (PaO2) and carbon dioxide (PaCO2) tensions, temperature) are available routinely in the intensive therapy unit. We have compared a typical iso-shunt-style estimation of venous admixture (assuming Hb, base excess, PaCO2 and temperature), and estimation using the Nottingham physiology simulator (NPS), with measured data. When the arteriovenous oxygen content difference (CaO2-CvO2) was assumed to be 50 ml litre-1, the 95% limits of agreement (LA95%) for venous admixture using the NPS were -3.9 +/- 8.5% and using an iso-shunt-style calculation, -6.4 +/- 10.6%. CaO2-CvO2 was 41.1 ml litre-1 in the patients studied, consistent with previous studies in the critically ill. When CaO2-CvO2 was assumed to be 40 ml litre-1, LA95% values were 0.5 +/- 8.2% and -2.1 +/- 10.1%, respectively. PMID:10434813

  10. Principal Components Analysis of Population Admixture

    PubMed Central

    Ma, Jianzhong; Amos, Christopher I.

    2012-01-01

    With the availability of high-density genotype information, principal components analysis (PCA) is now routinely used to detect and quantify the genetic structure of populations in both population genetics and genetic epidemiology. An important issue is how to make appropriate and correct inferences about population relationships from the results of PCA, especially when admixed individuals are included in the analysis. We extend our recently developed theoretical formulation of PCA to allow for admixed populations. Because the sampled individuals are treated as features, our generalized formulation of PCA directly relates the pattern of the scatter plot of the top eigenvectors to the admixture proportions and parameters reflecting the population relationships, and thus can provide valuable guidance on how to properly interpret the results of PCA in practice. Using our formulation, we theoretically justify the diagnostic of two-way admixture. More importantly, our theoretical investigations based on the proposed formulation yield a diagnostic of multi-way admixture. For instance, we found that admixed individuals with three parental populations are distributed inside the triangle formed by their parental populations and divide the triangle into three smaller triangles whose areas have the same proportions in the big triangle as the corresponding admixture proportions. We tested and illustrated these findings using simulated data and data from HapMap III and the Human Genome Diversity Project. PMID:22808102

  11. An observational study of stratocumulus entrainment and thermodynamics

    NASA Technical Reports Server (NTRS)

    Kawa, S. R.; Pearson, R., Jr.

    1989-01-01

    The stratocumulus (SC) entrainment and thermodynamics are studied using data from the Dynamics and Chemistry of Marine Stratocumulus (DYCOMS) experiment. The rate of entrainment of air from the free troposphere into the cloud-topped PBL is estimated using a technique based on the measurement of ozone flux and mean distribution. The average measured value of entrainment rate was found to be 3.0 mm/s with a range of 1.0 to 5.0 mm/s for cloudy cases. Thermodynamic budgets are constructed for eight DYCOMS cases. It was found that the divergence of the solar radiative flux is an important component of the boundary-layer energetics during midday, the factor which must be accounted for in mixed-layer models. The net longwave radiative flux profiles show good agreement with theoretical models, but an unambiguous partitioning of the flux divergence between inversion and mixed layers could not be established.

  12. Laminar Plunging Jets - Interfacial Rupture and Inception of Entrainment

    NASA Astrophysics Data System (ADS)

    Kishore, Aravind

    Interfacial rupture and entrainment are commonly observed, e.g., air bubbles within a container being filled with water from a faucet. The example involves a liquid jet (density, rho, and viscosity, η) plunging into a receiving pool of liquid. Below a critical liquid-jet velocity, the interface develops a cusp-like shape within the receiving pool. The cusp becomes sharper with increasing liquid-jet velocity, and at a critical velocity ( Vc), the interface between the liquid and the surrounding fluid (density, rho0, and viscosity, η0) ruptures. Interfacial tension (sigma) can no longer preserve the integrity of the interface between the two immiscible fluids, and the plunging jet drags/entrains surrounding fluid into the receiving pool. Subsequently, the entrained fluid breaks up into bubbles within the receiving pool. The focus of this dissertation is the numerical prediction of the critical entrainment inception velocities for laminar plunging jets using the Volume-Of-Fluid (VOF) method, a Computational Fluid Dynamics (CFD) method to simulate multi-fluid flows. Canonical to bottle-filling operations in the industry is the plunging-jet configuration -- the liquid jet issues from a nozzle and plunges into a container filled with liquid. Simulations of this configuration require capturing flow phenomena over a large range of length scales (4 orders of magnitude). Results show severe under-prediction of critical entrainment velocities when the maximum resolution is insufficient to capture the sharpening, and eventual rupture, of the interfacial cusp. Higher resolutions resulted in computational meshes with prohibitively large number of cells, and a drastic reduction in time-step values. Experimental results in the literature suggest at least a 100-fold increase in the smallest length scale when the entrained fluid is a liquid instead of air. This narrows the range of length scales in the problem. We exploit the experimental correlation between critical capillary

  13. Timescales of massive human entrainment.

    PubMed

    Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

    2015-01-01

    The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment--as expressed by the content and patterns of hundreds of thousands of messages on Twitter--during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5-10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment. PMID:25880357

  14. Investigation of the Entrainment Phenomenon Using a Scaling Approach

    NASA Astrophysics Data System (ADS)

    Kishore, Aravind; Ghia, Urmila

    2014-11-01

    Air entrainment is a commonly observed phenomenon; we see it when filling a glass with water from a faucet, in the frothing of the ocean surface, in white water rapids, etc. The focus of our work is the numerical simulation of the entrainment phenomenon associated with laminar plunging jets. With increasing jet velocity, the interfacial cusp formed between the jet and the liquid pool becomes sharper. At a critical jet velocity, entrainment inception occurs, i.e., the interfacial cusp breaks, the interface ruptures, and air is pulled into the liquid pool. We conduct two-fluid simulations using the Volume-Of-Fluid (VOF) methodology. The large range of length scales in the flow presents a major computational challenge. We postulate an approach based on scaling of the underlying physics and this helps alleviate the constraints that the physics poses on the numerical method. The approach is validated using a simple flow configuration - a cylinder rotating at an interface between two fluids. Our simulations capture the sharpening of the interfacial cusp, and the sudden rupture of the interface. The predicted critical entrainment velocities are within 1% of experimental data, thereby providing confidence in the approach. This work was supported by the UC Simulation Center at the University of Cincinnati.

  15. Heterogeneity in Genetic Admixture across Different Regions of Argentina

    PubMed Central

    Avena, Sergio; Via, Marc; Ziv, Elad; Pérez-Stable, Eliseo J.; Gignoux, Christopher R.; Dejean, Cristina; Huntsman, Scott; Torres-Mejía, Gabriela; Dutil, Julie; Matta, Jaime L.; Beckman, Kenneth; Burchard, Esteban González; Parolin, María Laura; Goicoechea, Alicia; Acreche, Noemí; Boquet, Mariel; Ríos Part, María Del Carmen; Fernández, Vanesa; Rey, Jorge; Stern, Mariana C.; Carnese, Raúl F.; Fejerman, Laura

    2012-01-01

    The population of Argentina is the result of the intermixing between several groups, including Indigenous American, European and African populations. Despite the commonly held idea that the population of Argentina is of mostly European origin, multiple studies have shown that this process of admixture had an impact in the entire Argentine population. In the present study we characterized the distribution of Indigenous American, European and African ancestry among individuals from different regions of Argentina and evaluated the level of discrepancy between self-reported grandparental origin and genetic ancestry estimates. A set of 99 autosomal ancestry informative markers (AIMs) was genotyped in a sample of 441 Argentine individuals to estimate genetic ancestry. We used non-parametric tests to evaluate statistical significance. The average ancestry for the Argentine sample overall was 65% European (95%CI: 63–68%), 31% Indigenous American (28–33%) and 4% African (3–4%). We observed statistically significant differences in European ancestry across Argentine regions [Buenos Aires province (BA) 76%, 95%CI: 73–79%; Northeast (NEA) 54%, 95%CI: 49–58%; Northwest (NWA) 33%, 95%CI: 21–41%; South 54%, 95%CI: 49–59%; p<0.0001] as well as between the capital and immediate suburbs of Buenos Aires city compared to more distant suburbs [80% (95%CI: 75–86%) versus 68% (95%CI: 58–77%), p = 0.01]. European ancestry among individuals that declared all grandparents born in Europe was 91% (95%CI: 88–94%) compared to 54% (95%CI: 51–57%) among those with no European grandparents (p<0.001). Our results demonstrate the range of variation in genetic ancestry among Argentine individuals from different regions in the country, highlighting the importance of taking this variation into account in genetic association and admixture mapping studies in this population. PMID:22506044

  16. Heterogeneity in genetic admixture across different regions of Argentina.

    PubMed

    Avena, Sergio; Via, Marc; Ziv, Elad; Pérez-Stable, Eliseo J; Gignoux, Christopher R; Dejean, Cristina; Huntsman, Scott; Torres-Mejía, Gabriela; Dutil, Julie; Matta, Jaime L; Beckman, Kenneth; Burchard, Esteban González; Parolin, María Laura; Goicoechea, Alicia; Acreche, Noemí; Boquet, Mariel; Ríos Part, María Del Carmen; Fernández, Vanesa; Rey, Jorge; Stern, Mariana C; Carnese, Raúl F; Fejerman, Laura

    2012-01-01

    The population of Argentina is the result of the intermixing between several groups, including Indigenous American, European and African populations. Despite the commonly held idea that the population of Argentina is of mostly European origin, multiple studies have shown that this process of admixture had an impact in the entire Argentine population. In the present study we characterized the distribution of Indigenous American, European and African ancestry among individuals from different regions of Argentina and evaluated the level of discrepancy between self-reported grandparental origin and genetic ancestry estimates. A set of 99 autosomal ancestry informative markers (AIMs) was genotyped in a sample of 441 Argentine individuals to estimate genetic ancestry. We used non-parametric tests to evaluate statistical significance. The average ancestry for the Argentine sample overall was 65% European (95%CI: 63-68%), 31% Indigenous American (28-33%) and 4% African (3-4%). We observed statistically significant differences in European ancestry across Argentine regions [Buenos Aires province (BA) 76%, 95%CI: 73-79%; Northeast (NEA) 54%, 95%CI: 49-58%; Northwest (NWA) 33%, 95%CI: 21-41%; South 54%, 95%CI: 49-59%; p<0.0001] as well as between the capital and immediate suburbs of Buenos Aires city compared to more distant suburbs [80% (95%CI: 75-86%) versus 68% (95%CI: 58-77%), p = 0.01]. European ancestry among individuals that declared all grandparents born in Europe was 91% (95%CI: 88-94%) compared to 54% (95%CI: 51-57%) among those with no European grandparents (p<0.001). Our results demonstrate the range of variation in genetic ancestry among Argentine individuals from different regions in the country, highlighting the importance of taking this variation into account in genetic association and admixture mapping studies in this population. PMID:22506044

  17. A Genomewide Admixture Map for Latino Populations

    PubMed Central

    Price, Alkes L. ; Patterson, Nick ; Yu, Fuli ; Cox, David R. ; Waliszewska, Alicja ; McDonald, Gavin J. ; Tandon, Arti ; Schirmer, Christine ; Neubauer, Julie ; Bedoya, Gabriel ; Duque, Constanza ; Villegas, Alberto ; Bortolini, Maria Catira ; Salzano, Francisco M. ; Gallo, Carla ; Mazzotti, Guido ; Tello-Ruiz, Marcela ; Riba, Laura ; Aguilar-Salinas, Carlos A. ; Canizales-Quinteros, Samuel ; Menjivar, Marta ; Klitz, William ; Henderson, Brian ; Haiman, Christopher A. ; Winkler, Cheryl ; Tusie-Luna, Teresa ; Ruiz-Linares, Andrés ; Reich, David 

    2007-01-01

    Admixture mapping is an economical and powerful approach for localizing disease genes in populations of recently mixed ancestry and has proven successful in African Americans. The method holds equal promise for Latinos, who typically inherit a mix of European, Native American, and African ancestry. However, admixture mapping in Latinos has not been practical because of the lack of a map of ancestry-informative markers validated in Native American and other populations. To address this, we screened multiple databases, containing millions of markers, to identify 4,186 markers that were putatively informative for determining the ancestry of chromosomal segments in Latino populations. We experimentally validated each of these markers in at least 232 new Latino, European, Native American, and African samples, and we selected a subset of 1,649 markers to form an admixture map. An advantage of our strategy is that we focused our map on markers distinguishing Native American from other ancestries and restricted it to markers with very similar frequencies in Europeans and Africans, which decreased the number of markers needed and minimized the possibility of false disease associations. We evaluated the effectiveness of our map for localizing disease genes in four Latino populations from both North and South America. PMID:17503322

  18. The Stochastic Parcel Model: A deterministic parameterization of stochastically entraining convection

    NASA Astrophysics Data System (ADS)

    Romps, David M.

    2016-03-01

    Convective entrainment is a process that is poorly represented in existing convective parameterizations. By many estimates, convective entrainment is the leading source of error in global climate models. As a potential remedy, an Eulerian implementation of the Stochastic Parcel Model (SPM) is presented here as a convective parameterization that treats entrainment in a physically realistic and computationally efficient way. Drawing on evidence that convecting clouds comprise air parcels subject to Poisson-process entrainment events, the SPM calculates the deterministic limit of an infinite number of such parcels. For computational efficiency, the SPM groups parcels at each height by their purity, which is a measure of their total entrainment up to that height. This reduces the calculation of convective fluxes to a sequence of matrix multiplications. The SPM is implemented in a single-column model and compared with a large-eddy simulation of deep convection.

  19. Entrainment by the jet in HH 47

    NASA Technical Reports Server (NTRS)

    Raymond, John C.; Morse, Jon A.; Hartigan, P.; Curiel, S.; Heathcote, Steve

    1994-01-01

    Fabry-Perot images of the HH 47 optical jet show that the velocity decreases from the center toward the edges which is interpreted as evidence for entrainment. Those images can be used to investigate the rate of entrainment required to account for the observed luminosity. Entrainment along the jet can account for only small fractions of the jet mass and the molecular outflow seen in CO. We compare the density, excitation, and velocity structure of the jet with the predictions of viscous entrainment models and models of entrainment by expulsion of jet material by internal shocks, and find that either type of model can explain the general features.

  20. Entrainment in electrohydrodynamic heat pipes

    NASA Technical Reports Server (NTRS)

    Jones, T. B.; Perry, M. P.

    1972-01-01

    A theoretical analysis for predicting the onset of the Kelvin-Helmholtz instability is reported. The model for the analysis is described, and the derived stability criterion are given. It is concluded that surface tension plays a role in the entrainment limit of electro hydrodynamic heat pipes. The surface of the liquid in an EHD flow structure is open, with no restriction placed on the wavenumbers of perturbations.

  1. Timescales of Massive Human Entrainment

    PubMed Central

    Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

    2015-01-01

    The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment—as expressed by the content and patterns of hundreds of thousands of messages on Twitter—during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5–10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment. PMID:25880357

  2. Scale dependence of entrainment-mixing mechanisms in cumulus clouds

    DOE PAGESBeta

    Lu, Chunsong; Liu, Yangang; Niu, Shengjie; Endo, Satoshi

    2014-12-17

    This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasingmore » scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.« less

  3. Scale dependence of entrainment-mixing mechanisms in cumulus clouds

    SciTech Connect

    Lu, Chunsong; Liu, Yangang; Niu, Shengjie; Endo, Satoshi

    2014-12-17

    This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasing scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.

  4. Turbulent diffusion of chemically reacting gaseous admixtures.

    PubMed

    Elperin, T; Kleeorin, N; Liberman, M; Rogachevskii, I

    2014-11-01

    We study turbulent diffusion of chemically reacting gaseous admixtures in a developed turbulence. In our previous study [Phys. Rev. Lett. 80, 69 (1998)PRLTAO0031-900710.1103/PhysRevLett.80.69] using a path-integral approach for a delta-correlated in a time random velocity field, we demonstrated a strong modification of turbulent transport in fluid flows with chemical reactions or phase transitions. In the present study we use the spectral τ approximation that is valid for large Reynolds and Peclet numbers and show that turbulent diffusion of the reacting species can be strongly depleted by a large factor that is the ratio of turbulent and chemical times (turbulent Damköhler number). We have demonstrated that the derived theoretical dependence of a turbulent diffusion coefficient versus the turbulent Damköhler number is in good agreement with that obtained previously in the numerical modeling of a reactive front propagating in a turbulent flow and described by the Kolmogorov-Petrovskii-Piskunov-Fisher equation. We have found that turbulent cross-effects, e.g., turbulent mutual diffusion of gaseous admixtures and turbulent Dufour effect of the chemically reacting gaseous admixtures, are less sensitive to the values of stoichiometric coefficients. The mechanisms of the turbulent cross-effects differ from the molecular cross-effects known in irreversible thermodynamics. In a fully developed turbulence and at large Peclet numbers the turbulent cross-effects are much larger than the molecular ones. The obtained results are applicable also to heterogeneous phase transitions. PMID:25493875

  5. Skin pigmentation, biogeographical ancestry and admixture mapping.

    PubMed

    Shriver, Mark D; Parra, Esteban J; Dios, Sonia; Bonilla, Carolina; Norton, Heather; Jovel, Celina; Pfaff, Carrie; Jones, Cecily; Massac, Aisha; Cameron, Neil; Baron, Archie; Jackson, Tabitha; Argyropoulos, George; Jin, Li; Hoggart, Clive J; McKeigue, Paul M; Kittles, Rick A

    2003-04-01

    Ancestry informative markers (AIMs) are genetic loci showing alleles with large frequency differences between populations. AIMs can be used to estimate biogeographical ancestry at the level of the population, subgroup (e.g. cases and controls) and individual. Ancestry estimates at both the subgroup and individual level can be directly instructive regarding the genetics of the phenotypes that differ qualitatively or in frequency between populations. These estimates can provide a compelling foundation for the use of admixture mapping (AM) methods to identify the genes underlying these traits. We present details of a panel of 34 AIMs and demonstrate how such studies can proceed, by using skin pigmentation as a model phenotype. We have genotyped these markers in two population samples with primarily African ancestry, viz. African Americans from Washington D.C. and an African Caribbean sample from Britain, and in a sample of European Americans from Pennsylvania. In the two African population samples, we observed significant correlations between estimates of individual ancestry and skin pigmentation as measured by reflectometry (R(2)=0.21, P<0.0001 for the African-American sample and R(2)=0.16, P<0.0001 for the British African-Caribbean sample). These correlations confirm the validity of the ancestry estimates and also indicate the high level of population structure related to admixture, a level that characterizes these populations and that is detectable by using other tests to identify genetic structure. We have also applied two methods of admixture mapping to test for the effects of three candidate genes (TYR, OCA2, MC1R) on pigmentation. We show that TYR and OCA2 have measurable effects on skin pigmentation differences between the west African and west European parental populations. This work indicates that it is possible to estimate the individual ancestry of a person based on DNA analysis with a reasonable number of well-defined genetic markers. The implications and

  6. Crustal entrainment and pulsar glitches.

    PubMed

    Chamel, N

    2013-01-01

    Large pulsar frequency glitches are generally interpreted as sudden transfers of angular momentum between the neutron superfluid permeating the inner crust and the rest of the star. Despite the absence of viscous drag, the neutron superfluid is strongly coupled to the crust due to nondissipative entrainment effects. These effects are shown to severely limit the maximum amount of angular momentum that can possibly be transferred during glitches. In particular, it is found that the glitches observed in the Vela pulsar require an additional reservoir of angular momentum. PMID:23383772

  7. A method for retrieving the cumulus entrainment rate from ground based observations

    NASA Astrophysics Data System (ADS)

    Wagner, Timothy J.

    2011-12-01

    The entrainment of drier environmental air into cumulus clouds affects the impact that these clouds have on the environment by modifying their radiative, microphysical, and thermodynamic characteristics. Entrainment is a difficult parameter to observe directly, and heretofore has been obtained from occasional aircraft penetrations. To increase the number of cumulus entrainment rate observations under a wide range of atmospheric conditions, an algorithm for retrieving the cumulus entrainment rate from ground-based remote sensing observations has been developed. This algorithm, called the Entrainment Rate In Cumulus Algorithm (ERICA), uses the suite of instruments at the Southern Great Plains (SGP) site of the United States Department of Energy's Atmospheric Radiation Measurement (ARM) Climate Research Facility as inputs into a Gauss-Newton optimal estimation scheme. The forward model in this algorithm is the Explicit Mixing Parcel Model (EMPM), a cloud parcel model that treats entrainment as a series of discrete mixing events. Output from EMPM is used to calculate quantities that can be observed from the surface, including effective radius and liquid water path. The entrainment rate in EMPM is adjusted iteratively until the modeled output converges to the observations. Sensitivity testing and error and information content analysis show that ERICA is a robust method for obtaining accurate estimates of entrainment rate without the drawbacks of aircraft observations. Results from a three-month trial of ERICA show significant variability of the entrainment rate of clouds in a single day and from one day to the next. The mean value from this analysis corresponds well with prior knowledge of the entrainment rate.

  8. Overfill of common piggyback admixture solutions.

    PubMed

    Kleinberg, M L; Chang, P

    1984-10-01

    The average final volume of 23 commonly used piggyback solutions was determined. Polyvinyl chloride (PVC) containers filled with 0.9% sodium chloride injection or 5% dextrose injection in 50 ml and 100 ml sizes were used for 20 of the piggybacks. A total of ten samples of each drug and dose were measured by draining the entire contents into a graduated cylinder and measuring the volume. The mean volumes, standard deviations, and ranges for each drug and dose were calculated. The volume found in each sample exceeded the volume in the original PVC container by at least 20% in the 50 ml size and 11% in the 100 ml size. The greatest percentage volume difference was 62% in the 50 ml size and 28% in the 100 ml size. The FasPak and the two Viaflex Plus Ready-To-Use containers, which did not require the use of the 50 and 100 ml PVC containers, had a percentage volume difference of 2.6%, 2.2%, and 3.4%, respectively. This information demonstrates the fact that the final volumes of some piggyback admixtures are significantly greater than that which may be presumed from the admixture label. PMID:10268316

  9. Optimal entrainment of heterogeneous noisy neurons

    PubMed Central

    Wilson, Dan; Holt, Abbey B.; Netoff, Theoden I.; Moehlis, Jeff

    2015-01-01

    We develop a methodology to design a stimulus optimized to entrain nonlinear, noisy limit cycle oscillators with uncertain properties. Conditions are derived which guarantee that the stimulus will entrain the oscillators despite these uncertainties. Using these conditions, we develop an energy optimal control strategy to design an efficient entraining stimulus and apply it to numerical models of noisy phase oscillators and to in vitro hippocampal neurons. In both instances, the optimal stimuli outperform other similar but suboptimal entraining stimuli. Because this control strategy explicitly accounts for both noise and inherent uncertainty of model parameters, it could have experimental relevance to neural circuits where robust spike timing plays an important role. PMID:26074762

  10. Partial entrainment of gravel bars during floods

    USGS Publications Warehouse

    Konrad, C.P.; Booth, D.B.; Burges, S.J.; Montgomery, D.R.

    2002-01-01

    Spatial patterns of bed material entrainment by floods were documented at seven gravel bars using arrays of metal washers (bed tags) placed in the streambed. The observed patterns were used to test a general stochastic model that bed material entrainment is a spatially independent, random process where the probability of entrainment is uniform over a gravel bar and a function of the peak dimensionless shear stress ??*0 of the flood. The fraction of tags missing from a gravel bar during a flood, or partial entrainment, had an approximately normal distribution with respect to ??*0 with a mean value (50% of the tags entrained) of 0.085 and standard deviation of 0.022 (root-mean-square error of 0.09). Variation in partial entrainment for a given ??*0 demonstrated the effects of flow conditioning on bed strength, with lower values of partial entrainment after intermediate magnitude floods (0.065 < ??*0 < 0.08) than after higher magnitude floods. Although the probability of bed material entrainment was approximately uniform over a gravel bar during individual floods and independent from flood to flood, regions of preferential stability and instability emerged at some bars over the course of a wet season. Deviations from spatially uniform and independent bed material entrainment were most pronounced for reaches with varied flow and in consecutive floods with small to intermediate magnitudes.

  11. Inferring admixture histories of human populations using linkage disequilibrium.

    PubMed

    Loh, Po-Ru; Lipson, Mark; Patterson, Nick; Moorjani, Priya; Pickrell, Joseph K; Reich, David; Berger, Bonnie

    2013-04-01

    Long-range migrations and the resulting admixtures between populations have been important forces shaping human genetic diversity. Most existing methods for detecting and reconstructing historical admixture events are based on allele frequency divergences or patterns of ancestry segments in chromosomes of admixed individuals. An emerging new approach harnesses the exponential decay of admixture-induced linkage disequilibrium (LD) as a function of genetic distance. Here, we comprehensively develop LD-based inference into a versatile tool for investigating admixture. We present a new weighted LD statistic that can be used to infer mixture proportions as well as dates with fewer constraints on reference populations than previous methods. We define an LD-based three-population test for admixture and identify scenarios in which it can detect admixture events that previous formal tests cannot. We further show that we can uncover phylogenetic relationships among populations by comparing weighted LD curves obtained using a suite of references. Finally, we describe several improvements to the computation and fitting of weighted LD curves that greatly increase the robustness and speed of the calculations. We implement all of these advances in a software package, ALDER, which we validate in simulations and apply to test for admixture among all populations from the Human Genome Diversity Project (HGDP), highlighting insights into the admixture history of Central African Pygmies, Sardinians, and Japanese. PMID:23410830

  12. I. Mixing in doorway flows. II. Entrainment in fire plumes

    NASA Astrophysics Data System (ADS)

    Lim, Christopher S.

    The motion of hot combustion products through a burning structure plays a dominant role in fixing the spread of the fire and the spread of toxic gases. The first part of this report is concerned with the effect of door geometry on the rate of turbulent mixing between the hot and cold layers near a doorway. The second part of the report deals with the entrainment rates in the near field of a buoyant diffusion methane flame.In the study of the motion of the hot combustion products near a doorway, the gas in the burning room is assumed to be divided into two homogeneous layers--the ceiling layer which contains the hot combustion products and the floor layer which contains the denser fresh air. Temperature and carbon dioxide measurements are taken from a half-scale room which uses a pump and furnace to simulate the entrainment and heating of the fresh air by the fire plume. The mass transfer rates are calculated from these measurements and are found to be a function of a Richardson number that uses the interface height measured from the floor as the characteristic length and the average inflow velocity of fresh air as the characteristic velocity. This form for Ri(0) is derived from an analysis based on Taylor's entrainment hypothesis. For a given fire size, i.e., for a given mass flow of fresh air into the room, the effect of reducing the door area is to reduce the value of Ri(0), and hence increase the mixing rate in the room. The door height is found to be a much stronger influence on the mixing rate and interface height than the door width.The entrainment rates of fresh air in the near field of a buoyant diffusion methane flame whose flames extend well above the interface between the hot gas layer and the fresh air layer are measured for several interface heights. In the experiments, the ceiling layer-fire plume interaction is simulated by placing a large steel hood over an axisymmetric burner. The hood may be raised or lowered to change the interface height. The

  13. Quantifying entrainment in pyroclastic density currents from the Tungurahua eruption, Ecuador: Integrating field proxies with numerical simulations

    NASA Astrophysics Data System (ADS)

    Benage, M. C.; Dufek, J.; Mothes, P. A.

    2016-07-01

    The entrainment of air into pyroclastic density currents (PDCs) impacts the dynamics and thermal history of these highly mobile currents. However, direct measurement of entrainment in PDCs is hampered due to hazardous conditions and opaqueness of these flows. We combine three-dimensional multiphase Eulerian-Eulerian-Lagrangian calculations with proxies of thermal conditions preserved in deposits to quantify air entrainment in PDCs at Tungurahua volcano, Ecuador. We conclude that small-volume PDCs develop a particle concentration gradient that results in disparate thermal characteristics for the concentrated bed load (>600 to ~800 K) and the overlying dilute suspended load (~300-600 K). The dilute suspended load has effective entrainment coefficients 2-3 times larger than the bed load. This investigation reveals a dichotomy in entrainment and thermal history between two regions in the current and provides a mechanism to interpret the depositional thermal characteristics of small-volume but frequently occurring PDCs.

  14. Entrainment instability and vertical motion as causes of stratocumulus breakup

    NASA Technical Reports Server (NTRS)

    Weaver, C. J.; Pearson, R., Jr.

    1990-01-01

    Entrainment instability is thought to be a cause of stratocumulus breakup. At the interface between the cloud and the overlying air, mixtures may form which are negatively buoyant because of cloud droplet evaporation. Quantities devised to predict breakup are obtained from aircraft observations and are tested against cloud observations from satellite. Often, the parameters indicate that breakup should occur but the clouds remain, sometimes for several days. One possible explanation for breakup is vertical motion from passing synoptic cyclones. Several cases suggest that breakup is associated with the downward vertical motion from the cold air advected behind an eastward moving cyclone.

  15. Air

    MedlinePlus

    ... do to protect yourself from dirty air . Indoor air pollution and outdoor air pollution Air can be polluted indoors and it can ... this chart to see what things cause indoor air pollution and what things cause outdoor air pollution! Indoor ...

  16. Ancestry, admixture and fitness in Colombian genomes

    PubMed Central

    Rishishwar, Lavanya; Conley, Andrew B.; Wigington, Charles H.; Wang, Lu; Valderrama-Aguirre, Augusto; King Jordan, I.

    2015-01-01

    The human dimension of the Columbian Exchange entailed substantial genetic admixture between ancestral source populations from Africa, the Americas and Europe, which had evolved separately for many thousands of years. We sought to address the implications of the creation of admixed American genomes, containing novel allelic combinations, for human health and fitness via analysis of an admixed Colombian population from Medellin. Colombian genomes from Medellin show a wide range of three-way admixture contributions from ancestral source populations. The primary ancestry component for the population is European (average = 74.6%, range = 45.0%–96.7%), followed by Native American (average = 18.1%, range = 2.1%–33.3%) and African (average = 7.3%, range = 0.2%–38.6%). Locus-specific patterns of ancestry were evaluated to search for genomic regions that are enriched across the population for particular ancestry contributions. Adaptive and innate immune system related genes and pathways are particularly over-represented among ancestry-enriched segments, including genes (HLA-B and MAPK10) that are involved in defense against endemic pathogens such as malaria. Genes that encode functions related to skin pigmentation (SCL4A5) and cutaneous glands (EDAR) are also found in regions with anomalous ancestry patterns. These results suggest the possibility that ancestry-specific loci were differentially retained in the modern admixed Colombian population based on their utility in the New World environment. PMID:26197429

  17. The entrainment rate for a row of turbulent jets. M.S. Thesis Final Report

    NASA Technical Reports Server (NTRS)

    Gordon, Eliott B.; Greber, Isaac

    1990-01-01

    Entrainment rates for a row of isothermal circular air jets issuing into a quiescent environment are found by integrating velocity distributions measured by a linearized hot-wire anemometer. Jet spacing to jet diameter ratios of 2.5, 5, 10, and 20 are studied at jet Reynold's numbers ranging from 5110 to 12070. Velocity distributions are determined at regular downstream intervals at axial distances equal to 16.4 to 164 jet diameters from the jet source. The entrainment rates for the four spacing configurations vary monotonically with increasing spacing/diameter between the limiting case of the slot jet entrainment rate (where the jet spacing to diameter ratio is zero) and the circular jet entrainment rate (in which the spacing to diameter ratio is infinity).

  18. Temperature compensation and entrainment in circadian rhythms

    NASA Astrophysics Data System (ADS)

    Bodenstein, C.; Heiland, I.; Schuster, S.

    2012-06-01

    To anticipate daily variations in the environment and coordinate biological activities into a daily cycle many organisms possess a circadian clock. In the absence of external time cues the circadian rhythm persists with a period of approximately 24 h. The clock phase can be shifted by single pulses of light, darkness, chemicals, or temperature and this allows entrainment of the clock to exactly 24 h by cycles of these zeitgebers. On the other hand, the period of the circadian rhythm is kept relatively constant within a physiological range of constant temperatures, which means that the oscillator is temperature compensated. The mechanisms behind temperature compensation and temperature entrainment are not fully understood, neither biochemically nor mathematically. Here, we theoretically investigate the interplay of temperature compensation and entrainment in general oscillatory systems. We first give an analytical treatment for small temperature shifts and derive that every temperature-compensated oscillator is entrainable to external small-amplitude temperature cycles. Temperature compensation ensures that this entrainment region is always centered at the endogenous period regardless of possible seasonal temperature differences. Moreover, for small temperature cycles the entrainment region of the oscillator is potentially larger for rectangular pulses. For large temperature shifts we numerically analyze different circadian clock models proposed in the literature with respect to these properties. We observe that for such large temperature shifts sinusoidal or gradual temperature cycles allow a larger entrainment region than rectangular cycles.

  19. Entrainment ranges of forced phase oscillators.

    PubMed

    Previte, Joseph P; Sheils, Natalie; Hoffman, Kathleen A; Kiemel, Tim; Tytell, Eric D

    2011-04-01

    In the vertebrate spinal cord, a neural circuit called the central pattern generator produces the basic locomotory rhythm. Short and long distance intersegmental connections serve to maintain coordination along the length of the body. As a way of examining the influence of such connections, we consider a model of a chain of coupled phase oscillators in which one oscillator receives a periodic forcing stimulus. For a certain range of forcing frequencies, the chain will match the stimulus frequency, a phenomenon called entrainment. Motivated by recent experiments in lampreys, we derive analytical expressions for the range of forcing frequencies that entrain the chain, and how that range depends on the forcing location. For short intersegmental connections, in which an oscillator is connected only to its nearest neighbors, we describe two ways in which entrainment is lost: internally, in which oscillators within the chain no longer oscillate at the same frequency; and externally, in which the the chain no longer has the same frequency as the forcing. By analyzing chains in which every oscillator is connected to every other oscillator (i.e., all-to-all connections), we show that the presence of connections with lengths greater than one do not necessarily change the entrainment ranges based on the nearest-neighbor model. We derive a criterion for the ratio of connection strengths under which the connections of length greater than one do not change the entrainment ranges produced in the nearest-neighbor model, provided entrainment is lost externally. However, when this criterion holds, the range of entrained frequencies is a monotonic function of forcing location, unlike experimental results, in which entrainment ranges are larger near the middle of the chain than at the ends. Numerically, we show that similar non-monotonic entrainment ranges are possible if the ratio criterion does not hold, suggesting that in the lamprey central pattern generator, intersegmental

  20. A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 1; Model Development

    NASA Technical Reports Server (NTRS)

    Cohen, Charles

    1998-01-01

    A method is developed which uses numerical tracers to make accurate diagnoses of entraimnent and detrainment rates and of the properties of the entrained and detrained air in numerically simulated clouds. The numerical advection scheme is modified to make it nondispersive, as required by the use of the tracers. Tests of the new method are made, and an appropriate definition of clouds is selected. Distributions of mixing fractions in the model consistently show maximums at the end points, for nearly undilute environmental air or nearly undilute cloud air, with a uniform distribution between. The cumulonimbus clouds simulated here entrain air that had been substantially changed by the clouds, and detrained air that is not necessarily representative of the cloud air at the same level.

  1. [The development of a dispensing cabinet of total nutrient admixture].

    PubMed

    Wu, Xiao-an

    2002-03-01

    A dispensing cabinet of total nutrient admixture is introduced in this paper. Which can be used for nutrient solution dispensing. The clinical application shows that it can provide a practical, simple, safe and satisfactory sterile environment. PMID:16104182

  2. Estimation of race admixture--a new method.

    PubMed

    Chakraborty, R

    1975-05-01

    The contribution of a parental population in the gene pool of a hybrid population which arose by hybridization with one or more other populations is estimated here at the population level from the probability of gene identity. The dynamics of accumulation of such admixture is studied incorporating the fluctuations due to finite size of the hybrid population. The method is illustrated with data on admixture in Cherokee Indians. PMID:1146991

  3. Geographic Patterns of Genome Admixture in Latin American Mestizos

    PubMed Central

    Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Dipierri, José E.; Alfaro, Emma L.; Bailliet, Graciela; Bianchi, Nestor O.; Llop, Elena; Rothhammer, Francisco; Excoffier, Laurent; Ruiz-Linares, Andrés

    2008-01-01

    The large and diverse population of Latin America is potentially a powerful resource for elucidating the genetic basis of complex traits through admixture mapping. However, no genome-wide characterization of admixture across Latin America has yet been attempted. Here, we report an analysis of admixture in thirteen Mestizo populations (i.e. in regions of mainly European and Native settlement) from seven countries in Latin America based on data for 678 autosomal and 29 X-chromosome microsatellites. We found extensive variation in Native American and European ancestry (and generally low levels of African ancestry) among populations and individuals, and evidence that admixture across Latin America has often involved predominantly European men and both Native and African women. An admixture analysis allowing for Native American population subdivision revealed a differentiation of the Native American ancestry amongst Mestizos. This observation is consistent with the genetic structure of pre-Columbian populations and with admixture having involved Natives from the area where the Mestizo examined are located. Our findings agree with available information on the demographic history of Latin America and have a number of implications for the design of association studies in population from the region. PMID:18369456

  4. Polymorphic Admixture Typing in Human Ethnic Populations

    PubMed Central

    Dean, Michael; Stephens, J. Claiborne; Winkler, Cheryl; Lomb, Deborah A.; Ramsburg, Mark; Boaze, Raleigh; Stewart, Claudia; Charbonneau, Lauren; Goldman, David; Albaugh, Bernard J.; Goedert, James J.; Beasley, R. Palmer; Hwang, Lu-Yu; Buchbinder, Susan; Weedon, Michael; Johnson, Patricia A.; Eichelberger, Mary; O'Brien, Stephen J.

    1994-01-01

    A panel of 257 RFLP loci was selected on the basis of high heterozygosity in Caucasian DNA surveys and equivalent spacing throughout the human genome. Probes from each locus were used in a Southern blot survey of allele frequency distribution for four human ethnic groups: Caucasian, African American, Asian (Chinese), and American Indian (Cheyenne). Nearly all RFLP loci were polymorphic in each group, albeit with a broad range of differing allele frequencies (δ). The distribution of frequency differences (δ values) was used for three purposes: (1) to provide estimates for genetic distance (differentiation) among these ethnic groups, (2) to revisit with a large data set the proportion of human genetic variation attributable to differentiation within ethnic groups, and (3) to identify loci with high δ values between recently admixed populations of use in mapping by admixture linkage disequilibrium (MALD). Although most markers display significant allele frequency differences between ethnic groups, the overall genetic distances between ethnic groups were small (.066–.098), and <10% of the measured overall molecular genetic diversity in these human samples can be attributed to “racial” differentiation. The median δ values for pairwise comparisons between groups fell between .15 and .20, permitting identification of highly informative RFLP loci for MALD disease association studies. PMID:7942857

  5. Particle-size distributions and their effect on entrainment in turbulent buoyant plumes

    NASA Astrophysics Data System (ADS)

    Jessop, D.; Jellinek, M.

    2014-12-01

    Explosive volcanic eruptions produce turbulent, buoyant jets that contain entrained particles. In these flows, turbulent entrainment of ambient air controls the ultimate rise height and spread of the jet. Volcanic jets are a natural example of these dilute particle-gas systems and the particles they contain can strongly control the dynamics of the bulk flow through the coupling between themselves and the surrounding fluid. The metric for the type of particle-fluid coupling is the Stokes number, St, which measures the timescale for the particles inertia against the timescale for the flow field, typically the overturn time of an eddy. We show that particles that are critically coupled to the flow (St=O(1)) change the turbulent structure of the flow by eddy stretching leading to energy cascades which are anisotropic in the horizontal and vertical directions. Crucially, flows laden with such particles carry considerably more energy in the stream-wise direction than particle-free flows which leads to a decrease in entrainment. This behaviour suggests that turbulent entrainment can effectively be shut down under critical St, giving rise to collapsing fountains whereas particle-free flows under the same source conditions would produce buoyant plumes. Changes in entrainment rates in volcanic jets are also manifested in readily observable features such as the rise height. We may therefore infer entrainment rates and their evolution over the course of an eruption from the maximum height and neutral buoyancy level.

  6. Simulation study on factors influencing the entrainment behavior of liquid steel as bubbles pass through the steel/slag interface

    NASA Astrophysics Data System (ADS)

    Li, Xiang; Bao, Yan-ping; Wang, Min; Lin, Lu

    2016-05-01

    In this study, a water/silicone oil interface was used to simulate the steel/slag interface in a converter. A high-speed camera was used to record the entrainment process of droplets when air bubbles were passed through the water/silicone oil interface. Motion parameters of the bubbles and droplets were obtained using particle kinematic analysis software, and the entrainment rate of the droplets was calculated. It was found that the entrainment rate decreased from 29.5% to 0 when the viscosity of the silicone oil was increased from 60 mPa·s to 820 mPa·s in the case of bubbles with a 5 mm equivalent diameter passing through the water/silicone oil interface. The results indicate that increasing the viscosity of the silicone oil is conducive to reducing the entrainment rate. The entrainment rate increased from 0 to 136.3% in the case of silicone oil with a viscosity of 60 mPa·s when the equivalent diameter of the bubbles was increased from 3 mm to 7 mm. We therefore conclude that small bubbles are also conductive to reducing the entrainment rate. The force analysis results for the water column indicate that the entrainment rate of droplets is affected by the velocity of the bubble passing through the water/silicone oil interface and that the entrainment rate decreases with the bubble velocity.

  7. Washing of the AN-107 entrained solids

    SciTech Connect

    GJ Lumetta; FV Hoopes

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the effects of inhibited water washing on the composition of the entrained solids in the diluted AN-107 low-activity waste (LAW) sample. The objective of this work was to gather data on the solubility of the AN-107 entrained solids in 0.01 M NaOH, so that BNFL can evaluate whether these solids require caustic leaching.

  8. The Admixture Structure and Genetic Variation of the Archipelago of Cape Verde and Its Implications for Admixture Mapping Studies

    PubMed Central

    Beleza, Sandra; Campos, Joana; Lopes, Jailson; Araújo, Isabel Inês; Hoppfer Almada, Ana; e Silva, António Correia; Parra, Esteban J.; Rocha, Jorge

    2012-01-01

    Recently admixed populations offer unique opportunities for studying human history and for elucidating the genetic basis of complex traits that differ in prevalence between human populations. Historical records, classical protein markers, and preliminary genetic data indicate that the Cape Verde islands in West Africa are highly admixed and primarily descended from European males and African females. However, little is known about the variation in admixture levels, admixture dynamics and genetic diversity across the islands, or about the potential of Cape Verde for admixture mapping studies. We have performed a detailed analysis of phenotypic and genetic variation in Cape Verde based on objective skin color measurements, socio-economic status (SES) evaluations and data for 50 autosomal, 34 X-chromosome, and 21 non-recombinant Y-chromosome (NRY) markers in 845 individuals from six islands of the archipelago. We find extensive genetic admixture between European and African ancestral populations (mean West African ancestry = 0.57, sd = 0.08), with individual African ancestry proportions varying considerably among the islands. African ancestry proportions calculated with X and Y-chromosome markers confirm that the pattern of admixture has been sex-biased. The high-resolution NRY-STRs reveal additional patterns of variation among the islands that are most consistent with differentiation after admixture. The differences in the autosomal admixture proportions are clearly evident in the skin color distribution across the islands (Pearson r = 0.54, P-value<2e–16). Despite this strong correlation, there are significant interactions between SES and skin color that are independent of the relationship between skin color and genetic ancestry. The observed distributions of admixture, genetic variation and skin color and the relationship of skin color with SES relate to historical and social events taking place during the settlement history of Cape Verde, and have

  9. Informational Constraints on Spontaneous Visuomotor Entrainment

    PubMed Central

    Varlet, Manuel; Bucci, Colleen; Richardson, Michael J.; Schmidt, R. C.

    2015-01-01

    Past research has revealed that an individual's rhythmic limb movements become spontaneously entrained to an environmental rhythm if visual information about the rhythm is available and its frequency is near that of the individual's movements. Research has also demonstrated that if the eyes track an environmental stimulus, the spontaneous entrainment to the rhythm is strengthened. One hypothesis explaining this enhancement of spontaneous entrainment is that the limb movements and eye movements are linked through a neuromuscular coupling or synergy. Another is that eye-tracking facilitates the pick up of important coordinating information. Experiment 1 investigated the first hypothesis by evaluating whether any rhythmic movement of the eyes would facilitate spontaneous entrainment. Experiment 2 and 3 (respectively) explored whether eye-tracking strengthens spontaneous entrainment by allowing the pickup of trajectory direction change information or allowing an increase in the amount of information to be picked-up. Results suggest that the eye-tracking enhancement of spontaneous entrainment is a consequence of increasing the amount of information available to be picked-up. PMID:25866944

  10. Coupling governs entrainment range of circadian clocks

    PubMed Central

    Abraham, Ute; Granada, Adrián E; Westermark, Pål O; Heine, Markus; Kramer, Achim; Herzel, Hanspeter

    2010-01-01

    Circadian clocks are endogenous oscillators driving daily rhythms in physiology and behavior. Synchronization of these timers to environmental light–dark cycles (‘entrainment') is crucial for an organism's fitness. Little is known about which oscillator qualities determine entrainment, i.e., entrainment range, phase and amplitude. In a systematic theoretical and experimental study, we uncovered these qualities for circadian oscillators in the suprachiasmatic nucleus (SCN—the master clock in mammals) and the lung (a peripheral clock): (i) the ratio between stimulus (zeitgeber) strength and oscillator amplitude and (ii) the rigidity of the oscillatory system (relaxation rate upon perturbation) determine entrainment properties. Coupling among oscillators affects both qualities resulting in increased amplitude and rigidity. These principles explain our experimental findings that lung clocks entrain to extreme zeitgeber cycles, whereas SCN clocks do not. We confirmed our theoretical predictions by showing that pharmacological inhibition of coupling in the SCN leads to larger ranges of entrainment. These differences between master and the peripheral clocks suggest that coupling-induced rigidity in the SCN filters environmental noise to create a robust circadian system. PMID:21119632

  11. Tuning the phase of circadian entrainment

    PubMed Central

    Bordyugov, Grigory; Abraham, Ute; Granada, Adrian; Rose, Pia; Imkeller, Katharina; Kramer, Achim; Herzel, Hanspeter

    2015-01-01

    The circadian clock coordinates daily physiological, metabolic and behavioural rhythms. These endogenous oscillations are synchronized with external cues (‘zeitgebers’), such as daily light and temperature cycles. When the circadian clock is entrained by a zeitgeber, the phase difference ψ between the phase of a clock-controlled rhythm and the phase of the zeitgeber is of fundamental importance for the fitness of the organism. The phase of entrainment ψ depends on the mismatch between the intrinsic period τ and the zeitgeber period T and on the ratio of the zeitgeber strength to oscillator amplitude. Motivated by the intriguing complexity of empirical data and by our own experiments on temperature entrainment of mouse suprachiasmatic nucleus (SCN) slices, we present a theory on how clock and zeitgeber properties determine the phase of entrainment. The wide applicability of the theory is demonstrated using mathematical models of different complexity as well as by experimental data. Predictions of the theory are confirmed by published data on Neurospora crassa strains for different period mismatches τ − T and varying photoperiods. We apply a novel regression technique to analyse entrainment of SCN slices by temperature cycles. We find that mathematical models can explain not only the stable asymptotic phase of entrainment, but also transient phase dynamics. Our theory provides the potential to explore seasonal variations of circadian rhythms, jet lag and shift work in forthcoming studies. PMID:26136227

  12. Tuning the phase of circadian entrainment.

    PubMed

    Bordyugov, Grigory; Abraham, Ute; Granada, Adrian; Rose, Pia; Imkeller, Katharina; Kramer, Achim; Herzel, Hanspeter

    2015-07-01

    The circadian clock coordinates daily physiological, metabolic and behavioural rhythms. These endogenous oscillations are synchronized with external cues ('zeitgebers'), such as daily light and temperature cycles. When the circadian clock is entrained by a zeitgeber, the phase difference ψ between the phase of a clock-controlled rhythm and the phase of the zeitgeber is of fundamental importance for the fitness of the organism. The phase of entrainment ψ depends on the mismatch between the intrinsic period τ and the zeitgeber period T and on the ratio of the zeitgeber strength to oscillator amplitude. Motivated by the intriguing complexity of empirical data and by our own experiments on temperature entrainment of mouse suprachiasmatic nucleus (SCN) slices, we present a theory on how clock and zeitgeber properties determine the phase of entrainment. The wide applicability of the theory is demonstrated using mathematical models of different complexity as well as by experimental data. Predictions of the theory are confirmed by published data on Neurospora crassa strains for different period mismatches τ - T and varying photoperiods. We apply a novel regression technique to analyse entrainment of SCN slices by temperature cycles. We find that mathematical models can explain not only the stable asymptotic phase of entrainment, but also transient phase dynamics. Our theory provides the potential to explore seasonal variations of circadian rhythms, jet lag and shift work in forthcoming studies. PMID:26136227

  13. Droplet entrainment correlation for high pressure annular two-phase flow

    SciTech Connect

    Lopez de Betodano, M.A.; Jan, Cheng-Shiun; Beus, S.G.

    1996-01-01

    The amount of entrainment in annular flow is essential to predict the point of dryout. Most of the entrainment correlations available in the literature are obtained from air-water low pressure data. However many important industrial applications involve high pressure annular flows. There are very few correlations applicable in this range and they are solely based on empirical data fits. Comparing the low pressure entrainment data of Cousins and Hewitt (1968) and the high pressure data of Keeys et. al. (1970) and Wurtz (1978) with existing correlations, the agreement at high pressure is generally poor, except for the empirical correlation of Nigmatulin and Krushenok (1989) which depends on a Weber number that includes the droplet concentration. We propose a new semi-mechanistic entrainment correlation for fully developed annular flow conditions: E = (0.9642)/(1 + (3836/We{sub C})). It is developed based on the droplet continuity equation and the entrainment rate model of Dallman et. al. (1979). This model is then modified to introduce a Weber number that includes the droplet concentration, We{sub C}. This Weber number is shown to scale the available high and low pressure air-water and steam-water data better than the other definitions. Because the new correlation is based on a model of entrainment rate it may be used as a starting point in the development of a correlation for this process applicable to high pressure water-steam annular flows. A correlation is suggested pending validation with high pressure entrainment rate data. 12 refs., 11 figs.

  14. Entrainment, Drizzle, and Cloud Albedo

    NASA Technical Reports Server (NTRS)

    Ackerman, A. S.; Kirkpatrick, J. P.; Stevens, D. E.; Toon, O. B.

    2004-01-01

    Increased aerosol and hence droplet concentrations in polluted clouds are expected to inhibit precipitation and thereby increase cloud water, leading to more reflective clouds that partially offset global warming. Yet polluted clouds are not generally observed to hold more water. Much of the uncertainty regarding the indirect aerosol effect stems from inadequate understanding of such changes in cloud water. Detailed simulations show that the relative humidity of air overlying stratocumulus is a leading factor determining whether cloud water increases or decreases when precipitation is suppressed. When the overlying air is dry, cloud water can decrease as droplet concentrations increase.

  15. Testing for Ancient Admixture between Closely Related Populations

    PubMed Central

    Durand, Eric Y.; Patterson, Nick; Reich, David; Slatkin, Montgomery

    2011-01-01

    One enduring question in evolutionary biology is the extent of archaic admixture in the genomes of present-day populations. In this paper, we present a test for ancient admixture that exploits the asymmetry in the frequencies of the two nonconcordant gene trees in a three-population tree. This test was first applied to detect interbreeding between Neandertals and modern humans. We derive the analytic expectation of a test statistic, called the D statistic, which is sensitive to asymmetry under alternative demographic scenarios. We show that the D statistic is insensitive to some demographic assumptions such as ancestral population sizes and requires only the assumption that the ancestral populations were randomly mating. An important aspect of D statistics is that they can be used to detect archaic admixture even when no archaic sample is available. We explore the effect of sequencing error on the false-positive rate of the test for admixture, and we show how to estimate the proportion of archaic ancestry in the genomes of present-day populations. We also investigate a model of subdivision in ancestral populations that can result in D statistics that indicate recent admixture. PMID:21325092

  16. Observational estimates of detrainment and entrainment in non-precipitating shallow cumulus

    NASA Astrophysics Data System (ADS)

    Norgren, M. S.; Small, J. D.; Jonsson, H. H.; Chuang, P. Y.

    2014-08-01

    Vertical transport associated with cumulus clouds is important to the redistribution of gases, particles and energy, with subsequent consequences for many aspects of the climate system. Previous studies have suggested that detrainment from clouds can be comparable to the updraft mass flux, and thus represents an important contribution to vertical transport. In this study, we describe a new method to deduce the amounts of gross detrainment and entrainment experienced by non-precipitating cumulus clouds using aircraft observations. The method utilizes equations for three conserved variables: cloud mass, total water and moist static energy. Optimizing these three equations leads to estimates of the mass fractions of adiabatic mixed-layer air, entrained air and detrained air that the sampled cloud has experienced. The method is applied to six flights of the CIRPAS Twin Otter during the Gulf of Mexico Atmospheric Composition and Climate Study (GoMACCS) which took place in the Houston, Texas region during the summer of 2006 during which 176 small, non-precipitating cumulus were sampled. Our analysis suggests that, on average, these clouds were comprised of 30 to 70% mixed-layer air, with entrained air comprising most of the remainder. The mass fraction of detrained air was less than 2% for a majority of the clouds, although 15% of them did exhibit detrained air fractions larger than 10%. Entrained and detrained air mass fractions both increased with altitude, and the largest detrainment events were almost all associated with air that was at their level of neutral buoyancy, findings that are consistent with previous studies.

  17. Nonphotic entrainment of the human circadian pacemaker

    NASA Technical Reports Server (NTRS)

    Klerman, E. B.; Rimmer, D. W.; Dijk, D. J.; Kronauer, R. E.; Rizzo, J. F. 3rd; Czeisler, C. A.

    1998-01-01

    In organisms as diverse as single-celled algae and humans, light is the primary stimulus mediating entrainment of the circadian biological clock. Reports that some totally blind individuals appear entrained to the 24-h day have suggested that nonphotic stimuli may also be effective circadian synchronizers in humans, although the nonphotic stimuli are probably comparatively weak synchronizers, because the circadian rhythms of many totally blind individuals "free run" even when they maintain a 24-h activity-rest schedule. To investigate entrainment by nonphotic synchronizers, we studied the endogenous circadian melatonin and core body temperature rhythms of 15 totally blind subjects who lacked conscious light perception and exhibited no suppression of plasma melatonin in response to ocular bright-light exposure. Nine of these fifteen blind individuals were able to maintain synchronization to the 24-h day, albeit often at an atypical phase angle of entrainment. Nonphotic stimuli also synchronized the endogenous circadian rhythms of a totally blind individual to a non-24-h schedule while living in constant near darkness. We conclude that nonphotic stimuli can entrain the human circadian pacemaker in some individuals lacking ocular circadian photoreception.

  18. On dust entrainment in photoevaporative winds

    NASA Astrophysics Data System (ADS)

    Hutchison, Mark A.; Price, Daniel J.; Laibe, Guillaume; Maddison, Sarah T.

    2016-09-01

    We investigate dust entrainment by photoevaporative winds in protoplanetary discs using dusty smoothed particle hydrodynamics. We use unequal-mass particles to resolve more than five orders of magnitude in disc/outflow density and a one-fluid formulation to efficiently simulate an equivalent magnitude range in drag stopping time. We find that only micron-sized dust grains and smaller can be entrained in extreme-UV radiation-driven winds. The maximum grain size is set by dust settling in the disc rather than aerodynamic drag in the wind. More generally, there is a linear relationship between the base flow density and the maximum entrainable grain size in the wind. A pileup of micron-sized dust grains can occur in the upper atmosphere at critical radii in the disc as grains decouple from the low-density wind. Entrainment is a strong function of location in the disc, resulting in a size sorting of grains in the outflow - the largest grain being carried out between 10 and 20 au. The peak dust density for each grain size occurs at the inner edge of its own entrainment region.

  19. Entrainment and the cranial rhythmic impulse.

    PubMed

    McPartland, J M; Mein, E A

    1997-01-01

    Entrainment is the integration or harmonization of oscillators. All organisms pulsate with myriad electrical and mechanical rhythms. Many of these rhythms emanate from synchronized pulsating cells (eg, pacemaker cells, cortical neurons). The cranial rhythmic impulse is an oscillation recognized by many bodywork practitioners, but the functional origin of this impulse remains uncertain. We propose that the cranial rhythmic impulse is the palpable perception of entrainment, a harmonic frequency that incorporates the rhythms of multiple biological oscillators. It is derived primarily from signals between the sympathetic and parasympathetic nervous systems. Entrainment also arises between organisms. The harmonizing of coupled oscillators into a single, dominant frequency is called frequency-selective entrainment. We propose that this phenomenon is the modus operandi of practitioners who use the cranial rhythmic impulse in craniosacral treatment. Dominant entrainment is enhanced by "centering," a technique practiced by many healers, for example, practitioners of Chinese, Tibetan, and Ayurvedic medicine. We explore the connections between centering, the cranial rhythmic impulse, and craniosacral treatment. PMID:8997803

  20. Food entrainment: major and recent findings

    PubMed Central

    Carneiro, Breno T. S.; Araujo, John F.

    2012-01-01

    Mammals exhibit daily anticipatory activity to cycles of food availability. Studies on such food anticipatory activity (FAA) have been conducted mainly in nocturnal rodents. They have identified FAA as the behavioral output of a food entrained oscillator (FEO), separate of the known light entrained oscillator (LEO) located in the suprachiasmatic nucleus (SCN) of hypothalamus. Here we briefly review the main characteristics of FAA. Also, we present results on four topics of food anticipation: (1) possible input signals to FEO, (2) FEO substrate, (3) the importance of canonical clock genes for FAA, and (4) potential practical applications of scheduled feeding. This mini review is intended to introduce the subject of food entrainment to those unfamiliar with it but also present them with relevant new findings on the issue. PMID:23205007

  1. Flowmeter for gas-entrained solids flow

    DOEpatents

    Porges, Karl G.

    1990-01-01

    An apparatus and method for the measurement of solids feedrate in a gas-entrained solids flow conveyance system. The apparatus and method of the present invention include a vertical duct connecting a source of solids to the gas-entrained flow conveyance system, a control valve positioned in the vertical duct, and a capacitive densitometer positioned along the duct at a location a known distance below the control valved so that the solid feedrate, Q, of the gas entrained flow can be determined by Q=S.rho..phi.V.sub.S where S is the cross sectional area of the duct, .rho. is the density of the solid, .phi. is the solid volume fraction determined by the capacitive densitometer, and v.sub.S is the local solid velocity which can be inferred from the konown distance of the capacitive densitometer below the control valve.

  2. Resonant entrainment of a confined pulsed jet

    NASA Technical Reports Server (NTRS)

    Parikh, P. G.; Moffat, R. J.

    1982-01-01

    This paper reports the discovery of a new resonant entrainment phenomenon associated with a confined, pulsed jet flow. It was found that a confined jet, when pulsed at an organ-pipe resonant frequency of the confinement tube, experiences greatly enhanced entrainment and mixing near the exit end of the confinement tube compared to a steady confined jet. The mixing and entrainment rates for the resonantly pulsed confined jet approach, and in some cases slightly exceed, those for an unconfined pulsed jet. Both visual and quantitative evidence of this phenomenon is presented. The new effect should be of considerable interest in ejector and combustor design, both of which benefit from any enhancement in mixing between a primary and a secondary flow

  3. Observational estimates of detrainment and entrainment in non-precipitating shallow cumulus

    NASA Astrophysics Data System (ADS)

    Norgren, M. S.; Small, J. D.; Jonsson, H. H.; Chuang, P. Y.

    2016-01-01

    Vertical transport associated with cumulus clouds is important to the redistribution of gases, particles, and energy, with subsequent consequences for many aspects of the climate system. Previous studies have suggested that detrainment from clouds can be comparable to the updraft mass flux, and thus represents an important contribution to vertical transport. In this study, we describe a new method to deduce the amounts of gross detrainment and entrainment experienced by non-precipitating cumulus clouds using aircraft observations. The method utilizes equations for three conserved variables: cloud mass, total water, and moist static energy. Optimizing these three equations leads to estimates of the mass fractions of adiabatic mixed-layer air, entrained air and detrained air that the sampled cloud has experienced. The method is applied to six flights of the CIRPAS Twin Otter during the Gulf of Mexico Atmospheric Composition and Climate Study (GoMACCS) which took place in the Houston, Texas region during the summer of 2006 during which 176 small, non-precipitating cumuli were sampled. Using our novel method, we find that, on average, these clouds were comprised of 30 to 70 % mixed-layer air, with entrained air comprising most of the remainder. The mass fraction of detrained air was usually very small, less than 2 %, although values larger than 10 % were found in 15 % of clouds. Entrained and detrained air mass fractions both increased with altitude, consistent with some previous observational studies. The largest detrainment events were almost all associated with air that was at their level of neutral buoyancy, which has been hypothesized in previous modeling studies. This new method could be readily used with data from other previous aircraft campaigns to expand our understanding of detrainment for a variety of cloud systems.

  4. Ozone conservation and entrainment in cumulus congestus

    NASA Technical Reports Server (NTRS)

    Pearson, R., Jr.; Weaver, C. J.

    1989-01-01

    This study demonstrates that ozone mixing ratio is conserved during moist convection and can be used as a tracer for cloud entrainment studies. The approach is to apply mixing line analysis to pairs of liquid water potential temperature, total water mixing ratio, O3 and pseudo-equivalent potential temperature derived from aircraft penetrations of growing cumulus congestus. Conclusions about entrainment from the mixing diagrams employing O3 agree with those using thermodynamic quantities. Any disagreement uncovered deficiencies in the water substance measurement technique.

  5. Optical Properties of TGS Crystal with L-Valine Admixture

    SciTech Connect

    Stadnyk, V. Yo. Romanyuk, N. A.; Kiryk, Yu. I.

    2010-11-15

    The thermal expansion and temperature and the spectral dependences of the refractive indices and birefringence of triglycine sulphate (TGS) crystals with a 5% L-valine admixture have been investigated. It is established that the introduction of L-valine weakens the temperature dependence of the refractive indices and the birefringence and thermal expansion of TGS crystals. The parameters of the Sellmeier formula, refractions, and electronic polarizabilities are calculated. The changes observed may be related to the increase in hardness of admixture-containing crystals, the decrease in the spontaneous polarization, the replacement of the refraction components of the valine bond, or the spontaneous electro-optic effect.

  6. Optical Properties of TGS Crystal with L-Valine Admixture

    NASA Astrophysics Data System (ADS)

    Stadnyk, V. Yo.; Romanyuk, N. A.; Kiryk, Yu. I.

    2010-11-01

    The thermal expansion and temperature and the spectral dependences of the refractive indices and birefringence of triglycine sulphate (TGS) crystals with a 5% L-valine admixture have been investigated. It is established that the introduction of L-valine weakens the temperature dependence of the refractive indices and the birefringence and thermal expansion of TGS crystals. The parameters of the Sellmeier formula, refractions, and electronic polarizabilities are calculated. The changes observed may be related to the increase in hardness of admixture-containing crystals, the decrease in the spontaneous polarization, the replacement of the refraction components of the valine bond, or the spontaneous electro-optic effect.

  7. Lidar observations of mixed layer dynamics - Tests of parameterized entrainment models of mixed layer growth rate

    NASA Technical Reports Server (NTRS)

    Boers, R.; Eloranta, E. W.; Coulter, R. L.

    1984-01-01

    Ground based lidar measurements of the atmospheric mixed layer depth, the entrainment zone depth and the wind speed and wind direction were used to test various parameterized entrainment models of mixed layer growth rate. Six case studies under clear air convective conditions over flat terrain in central Illinois are presented. It is shown that surface heating alone accounts for a major portion of the rise of the mixed layer on all days. A new set of entrainment model constants was determined which optimized height predictions for the dataset. Under convective conditions, the shape of the mixed layer height prediction curves closely resembled the observed shapes. Under conditions when significant wind shear was present, the shape of the height prediction curve departed from the data suggesting deficiencies in the parameterization of shear production. Development of small cumulus clouds on top of the layer is shown to affect mixed layer depths in the afternoon growth phase.

  8. Study on Droplet Entrainment of High-Viscosity Falling Liquid Film

    NASA Astrophysics Data System (ADS)

    Inumaru, Jun; Ohtaka, Maromu; Watanabe, Hiroaki

    An experimental study of counter-current annular two-phase flow of high-viscosity liquid and air in a large diameter pipe was carried out to investigate the inception criterion for entrainment of molten slag droplet in an entrained flow coal gasifier. Liquid film thickness was measured using a high-speed camera for 4 types of liquid with various viscosities and surface tensions. It was clearly shown that the measured average wave amplitude had a good correlation with the gas Reynolds number, and that the predicted critical gas velocity for droplet inception using new formula of wave amplitude had a good agreement with the experimental results under the condition of very low fluid Reynolds number( Ref ≤10). The critical Weber number Wec =1.73 was obtained as inception criterion of droplet entrainment.

  9. Modeling Atmospheric Entrainment and Transport of Impact Ejecta

    NASA Astrophysics Data System (ADS)

    Barnouin-Jha, Olivier Serge

    1998-10-01

    Many mechanisms have been proposed to explain the origin of fluidized ejecta morphologies observed at craters formed by an asteroid or comet colliding with a planetary surface. The predominant mechanisms include: the incorporation of water or volatiles into a subsequently fluidized ejecta flow resembling a mudslide; the incorporation of air and volatiles into a debris cloud of primary and secondary ejecta that slides along the target surface; the formation of an ejecta ''sturzstrom' following the gravitational collapse of an ejecta curtain that has been decelerated and steepened by impinging atmosphere; and, the formation of strong atmospheric winds generated by an advancing ejecta curtain that entrain and deposit ejecta. Laboratory experiments show that this last mechanism produces fluidized ejecta facies with contiguous ramparts and lobate flows that are remarkably similar to features seen on Mars, Venus and the Earth. In order to quantitatively assess the importance of such winds at planetary scales, this thesis combines a variety of analytical, numerical and empirical techniques to investigate the interactions between an advancing ejecta curtain and an atmosphere. The physical models developed describe the entrainment capacity and initial transport of ejecta by these winds, as well as some of the factors controlling ejecta deposition. The ultimate objective of this study is to model most aspects of ejecta entrainment, transport and deposition. In combination with observations of fluidized ejecta facies, such models should provide new insight into the target and atmospheric conditions present during crater formation. Such information may improve our understanding of past climatic and surface conditions on planets such as Mars.

  10. Relationships of Entrainment Rate with Dynamical and Thermodynamic Properties in Shallow Convection

    NASA Astrophysics Data System (ADS)

    Lu, C.; Liu, Y.; Zhang, G. J.; Wu, X.; Endo, S.; Cao, L.; Li, Y.; Guo, X.

    2015-12-01

    This work examines the relationships of entrainment rate to vertical velocity, buoyancy, turbulent dissipation rate by applying stepwise principal component regression to observational data from shallow cumulus clouds collected during the Routine AAF [Atmospheric Radiation Measurement (ARM) Aerial Facility] Clouds with Low Optical Water Depths (CLOWD) Optical Radiative Observations (RACORO) field campaign over the ARM Southern Great Plains (SGP) site near Lamont, Oklahoma. The cumulus clouds during the RACORO campaign simulated using a large eddy simulation (LES) model are also examined with the same approach. The analysis shows that combination of multiple variables can better represent entrainment rate in both the observations and LES than the single-variable fitting equations and the three commonly used parameterizations. A new parameterization is thus presented that relates entrainment rate to vertical velocity, buoyancy and dissipation rate; the effects of treating clouds as ensembles and humid shells surrounding cumulus clouds on the new parameterization are discussed. Physical mechanisms underlying the relationships of entrainment rate to vertical velocity, buoyancy and dissipation rate are also explored. Furthermore, the effects of relative humidity in the entrained dry air on the above relationships are discussed; a possible physical mechanism for the effects is explored.

  11. Inclined gravity currents filling basins: The influence of Reynolds number on entrainment into gravity currents

    NASA Astrophysics Data System (ADS)

    Hogg, Charlie A. R.; Dalziel, Stuart B.; Huppert, Herbert E.; Imberger, Jörg

    2015-09-01

    In many important natural and industrial systems, gravity currents of dense fluid feed basins. Examples include lakes fed by dense rivers and auditoria supplied with cooled air by ventilation systems. As we will show, the entrainment into such buoyancy driven currents can be influenced by viscous forces. Little work, however, has examined this viscous influence and how entrainment varies with the Reynolds number, Re. Using the idea of an entrainment coefficient, E, we derive a mathematical expression for the rise of the front at the top of the dense fluid ponding in a basin, where the horizontal cross-sectional area of the basin varies linearly with depth. We compare this expression to experiments on gravity currents with source Reynolds numbers, Res, covering the broad range 100 < Res < 1500. The form of the observed frontal rises was well approximated by our theory. By fitting the observed frontal rises to the theoretical form with E as the free parameter, we find a linear trend for E(Res) over the range 350 < Res < 1100, which is in the transition to turbulent flow. In the experiments, the entrainment coefficient, E, varied from 4 × 10-5 to 7 × 10-2. These observations show that viscous damping can be a dominant influence on gravity current entrainment in the laboratory and in geophysical flows in this transitional regime.

  12. Impact of reduced near-field entrainment of overpressured volcanic jets on plume development

    NASA Astrophysics Data System (ADS)

    Saffaraval, Farhad; Solovitz, Stephen A.; Ogden, Darcy E.; Mastin, Larry G.

    2012-05-01

    Volcanic plumes are often studied using one-dimensional analytical models, which use an empirical entrainment ratio to close the equations. Although this ratio is typically treated as constant, its value near the vent is significantly reduced due to flow development and overpressured conditions. To improve the accuracy of these models, a series of experiments was performed using particle image velocimetry, a high-accuracy, full-field velocity measurement technique. Experiments considered a high-speed jet with Reynolds numbers up to 467,000 and exit pressures up to 2.93 times atmospheric. Exit gas densities were also varied from 0.18 to 1.4 times that of air. The measured velocity was integrated to determine entrainment directly. For jets with exit pressures near atmospheric, entrainment was approximately 30% less than the fully developed level at 20 diameters from the exit. At pressures nearly three times that of the atmosphere, entrainment was 60% less. These results were introduced into Plumeria, a one-dimensional plume model, to examine the impact of reduced entrainment. The maximum column height was only slightly modified, but the critical radius for collapse was significantly reduced, decreasing by nearly a factor of two at moderate eruptive pressures.

  13. A numerical study of jet entrainment effects on the subsonic flow over nozzle afterbodies

    NASA Technical Reports Server (NTRS)

    Wilmoth, R. G.; Dash, S. M.; Pergament, H. S.

    1979-01-01

    A viscous-inviscid interaction model has been developed which accounts for jet entrainment effects in the prediction of the subsonic flow over nozzle afterbodies. The jet entrainment model is based on the concept of a weakly interacting shear layer in which the local streamline deflections due to entrainment are accounted for by a displacement-thickness type correction to the inviscid plume boundary. The entire flowfield is solved in an iterative manner to account for the effects on the inviscid external flow of the turbulent boundary layer, turbulent mixing and chemical reactions in the shear layer, and the inviscid jet exhaust flow. The individual components of the computational model are described and numerical results are presented which illustrate the interactive effects of entrainment on the overall flow structure. The validity of the interactive model is assessed by comparisons with data obtained from flowfield measurements on cold-air jet exhausts. Numerical results and experimental data are also given which show the entrainment effects on nozzle boattail drag under various jet exhaust and freestream flow conditions.

  14. Impact of reduced near-field entrainment of overpressured volcanic jets on plume development

    USGS Publications Warehouse

    Saffaraval, Farhad; Solovitz, Stephen A.; Ogden, Darcy E.; Mastin, Larry G.

    2012-01-01

    Volcanic plumes are often studied using one-dimensional analytical models, which use an empirical entrainment ratio to close the equations. Although this ratio is typically treated as constant, its value near the vent is significantly reduced due to flow development and overpressured conditions. To improve the accuracy of these models, a series of experiments was performed using particle image velocimetry, a high-accuracy, full-field velocity measurement technique. Experiments considered a high-speed jet with Reynolds numbers up to 467,000 and exit pressures up to 2.93 times atmospheric. Exit gas densities were also varied from 0.18 to 1.4 times that of air. The measured velocity was integrated to determine entrainment directly. For jets with exit pressures near atmospheric, entrainment was approximately 30% less than the fully developed level at 20 diameters from the exit. At pressures nearly three times that of the atmosphere, entrainment was 60% less. These results were introduced into Plumeria, a one-dimensional plume model, to examine the impact of reduced entrainment. The maximum column height was only slightly modified, but the critical radius for collapse was significantly reduced, decreasing by nearly a factor of two at moderate eruptive pressures.

  15. Liquid Droplet Detachment and Entrainment in Microscale Flows

    NASA Astrophysics Data System (ADS)

    Hidrovo, Carlos

    2005-11-01

    In this talk we will present a first order study of liquid water detachment and entrainment into air flows in hydrophobic microchannels. Silicon based microstructures consisting of 23 mm long U-shaped channels of different geometry were used for this purpose. The structures are treated with a Molecular Vapor Deposition (MVD) process that renders them hydrophobic. Liquid water is injected through a side slot located 2/3 of the way downstream from the air channel inlet. The water entering the air channel beads up into slugs or droplets that grow in size at this injection location until they fill and flood the channel or are carried away by the air flow. The slugs/droplets dimensions at detachment are correlated against superficial gas velocity and proper dimensionless parameters are postulated and examined to compare hydrodynamic forces against surface tension. It is found that slug/droplet detachment is dominated by two main forces: pressure gradient drag, arising from confinement of a viscous flow in the channel, and inertial drag, arising from the stagnation of the air due to obstruction by the slugs/droplets. A detachment regime map is postulated based on the relative importance of these forces under different flow conditions.

  16. Laminar Entrained Flow Reactor (Fact Sheet)

    SciTech Connect

    Not Available

    2014-02-01

    The Laminar Entrained Flow Reactor (LEFR) is a modular, lab scale, single-user reactor for the study of catalytic fast pyrolysis (CFP). This system can be employed to study a variety of reactor conditions for both in situ and ex situ CFP.

  17. LIQUID ENTRAINMENT FROM A MOBILE BED SCRUBBER

    EPA Science Inventory

    The paper gives results of the measurement of liquid entrainment rate and drop size distribution in the exhaust gas stream from a mobile bed scrubber. The pilot plant scrubber was 46 cm square and was packed with 3.8 cm diameter hollow polyethylene spheres to a static depth of 25...

  18. Washing of the AW-101 entrained solids

    SciTech Connect

    GJ Lumetta

    2000-03-31

    BNFL Inc. (BNFL) is under contract with the US Department of Energy, River Protection Project (DOE-RPP) to design, construct, and operate facilities for treating wastes stored in the single-shell and double-shell tanks at the Hanford Site, Richland, Washington. The DOE-BNFL RPP contract identifies two feeds to the waste treatment plant: (1) primarily liquid low-activity waste (LAW) consisting of less than 2 wt% entrained solids and (2) high-level waste (HLW) consisting of 10 to 200 g/L solids slurry. This report describes the results of a test conducted by Battelle to assess the effects of inhibited water washing on the composition of the entrained solids in the diluted AW-101 low-activity waste (LAW) sample. The objective of this work was to gather data on the solubility of the AW-101 entrained solids in 0.01 M NaOH, so that BNFL can evaluate whether these solids require caustic leaching. The work was conducted according to test plan BNFL-TP-29953-9, Rev. 0, LAW Entrained Solids Water Wash and Caustic Leach Testing. The test went according to plan, with no deviations from the test plan. Based on the results of the 0.01 M NaOH washing, a decision was made by BNFL to not proceed with the caustic leaching test. The composition of the washed solids was such that caustic leaching would not result in significant reduction in the immobilized HLW volume.

  19. Attentional entrainment and perceived event duration

    PubMed Central

    McAuley, J. Devin; Fromboluti, Elisa Kim

    2014-01-01

    This study considered the contribution of dynamic attending theory (DAT) and attentional entrainment to systematic distortions in perceived event duration. Three experiments were conducted using an auditory oddball paradigm, in which listeners judged the duration of a deviant (oddball) stimulus embedded within a series of identical (standard) stimuli. To test for a role of attentional entrainment in perceived oddball duration, oddballs were presented at either temporally expected (on time) or unexpectedly early or late time points relative to extrapolation of the context rhythm. Consistent with involvement of attentional entrainment in perceived duration, duration judgements about the oddball were least distorted when the oddball occurred on time with respect to the entrained rhythm, whereas durations of early and late oddballs were perceived to be shorter and longer, respectively. This pattern of results was independent of the absolute time interval preceding the oddball. Moreover, as expected, an irregularly timed sequence context weakened observed differences between oddballs with on-time and late onsets. Combined with other recent work on the role of temporal preparation in duration distortions, the present findings allot at least a portion of the oddball effect to increased attention to events that are more expected, rather than on their unexpected nature per se. PMID:25385779

  20. Cloud top entrainment instability and cloud top distributions

    NASA Technical Reports Server (NTRS)

    Boers, Reinout; Spinhirne, James D.

    1990-01-01

    Classical cloud-top entrainment instability condition formulation is discussed. A saturation point diagram is used to investigate the details of mixing in cases where the cloud-top entrainment instability criterion is satisfied.

  1. Problems with the process partitioning theory of stratocumulus entrainment

    NASA Technical Reports Server (NTRS)

    Randall, D. A.

    1984-01-01

    Three different approaches to partitioning were proposed. Ball (1960), Lilly (1968), and Deardorff et al. (1969, 1974) considered the sign of the net buoyancy flux at each level. If the net flux is positive, it is counted as TKE producing; otherwise, it is counted as TKE consuming. This approach can be called Eulerian partitioning. The second approach can be called process partitioning. It is assumed that the various processes acting in concert each produce and consume the same energy as if they acted independently (Manins and Turner, 1978). The total rates of TKE production and consumption are obtained by summing the effects of all the forcing processes. The third approach is Lagrangian partitioning. Each air parcel is considered as either producing or consuming TKE, according to the sign of the product of its density and vertical velocity anomalies. Stage and Businger (1981a,b) have applied process partitioning to the cloud topped mixed layer. One of the most important processes influencing entrainment into such a layer is cloud top radiative cooling. The production and consumption due to entrainment and radiative cooling are thus closely related. Model results are sensitive to the choice of formulation.

  2. Strong selection at MHC in Mexicans since admixture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the major histocompatibility complex (MHC) region Mexicans have excessive African ance...

  3. Worldwide patterns of genomic variation and admixture in gray wolves.

    PubMed

    Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K

    2016-02-01

    The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter-gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. PMID:26680994

  4. A Spatial Framework for Understanding Population Structure and Admixture.

    PubMed

    Bradburd, Gideon S; Ralph, Peter L; Coop, Graham M

    2016-01-01

    Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build "geogenetic maps," which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix. PMID:26771578

  5. North African Populations Carry the Signature of Admixture with Neandertals

    PubMed Central

    Civit, Sergi; Arenas, Conxita; Ávila-Arcos, María C.; Bustamante, Carlos D.; Comas, David; Lalueza-Fox, Carles

    2012-01-01

    One of the main findings derived from the analysis of the Neandertal genome was the evidence for admixture between Neandertals and non-African modern humans. An alternative scenario is that the ancestral population of non-Africans was closer to Neandertals than to Africans because of ancient population substructure. Thus, the study of North African populations is crucial for testing both hypotheses. We analyzed a total of 780,000 SNPs in 125 individuals representing seven different North African locations and searched for their ancestral/derived state in comparison to different human populations and Neandertals. We found that North African populations have a significant excess of derived alleles shared with Neandertals, when compared to sub-Saharan Africans. This excess is similar to that found in non-African humans, a fact that can be interpreted as a sign of Neandertal admixture. Furthermore, the Neandertal's genetic signal is higher in populations with a local, pre-Neolithic North African ancestry. Therefore, the detected ancient admixture is not due to recent Near Eastern or European migrations. Sub-Saharan populations are the only ones not affected by the admixture event with Neandertals. PMID:23082212

  6. Worldwide patterns of genomic variation and admixture in gray wolves

    PubMed Central

    Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M.; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K.

    2016-01-01

    The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter–gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. PMID:26680994

  7. A Spatial Framework for Understanding Population Structure and Admixture

    PubMed Central

    Bradburd, Gideon S.; Ralph, Peter L.; Coop, Graham M.

    2016-01-01

    Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build “geogenetic maps,” which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix. PMID:26771578

  8. Speech Entrainment Compensates for Broca's Area Damage

    PubMed Central

    Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

    2015-01-01

    Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to speech entrainment. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during speech entrainment versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of speech entrainment to improve speech production and may help select patients for speech entrainment treatment. PMID:25989443

  9. Native American admixture in the Quebec founder population.

    PubMed

    Moreau, Claudia; Lefebvre, Jean-François; Jomphe, Michèle; Bhérer, Claude; Ruiz-Linares, Andres; Vézina, Hélène; Roy-Gagnon, Marie-Hélène; Labuda, Damian

    2013-01-01

    For years, studies of founder populations and genetic isolates represented the mainstream of genetic mapping in the effort to target genetic defects causing Mendelian disorders. The genetic homogeneity of such populations as well as relatively homogeneous environmental exposures were also seen as primary advantages in studies of genetic susceptibility loci that underlie complex diseases. European colonization of the St-Lawrence Valley by a small number of settlers, mainly from France, resulted in a founder effect reflected by the appearance of a number of population-specific disease-causing mutations in Quebec. The purported genetic homogeneity of this population was recently challenged by genealogical and genetic analyses. We studied one of the contributing factors to genetic heterogeneity, early Native American admixture that was never investigated in this population before. Consistent admixture estimates, in the order of one per cent, were obtained from genome-wide autosomal data using the ADMIXTURE and HAPMIX software, as well as with the fastIBD software evaluating the degree of the identity-by-descent between Quebec individuals and Native American populations. These genomic results correlated well with the genealogical estimates. Correlations are imperfect most likely because of incomplete records of Native founders' origin in genealogical data. Although the overall degree of admixture is modest, it contributed to the enrichment of the population diversity and to its demographic stratification. Because admixture greatly varies among regions of Quebec and among individuals, it could have significantly affected the homogeneity of the population, which is of importance in mapping studies, especially when rare genetic susceptibility variants are in play. PMID:23776491

  10. Impacts of winds on volcanic plumes - Do crossflows challenge the Morton, Turner and Taylor entrainment assumptions?

    NASA Astrophysics Data System (ADS)

    Aubry, T. J.; Jellinek, M.; Carazzo, G.

    2014-12-01

    Volcanic plumes rising into Earth's atmosphere are influenced strongly by tropospheric and stratospheric winds. In the absence of wind effects, Morton, Taylor and Turner (MTT, 1956) used a similarity theory to show that the maximum height for these flows is governed mostly by the atmospheric stratification and the buoyancy flux at the vent. Crucially, in developing this theory MTT introduced the "entrainment hypothesis" in which the rate of entrainment of atmospheric air by the large eddies forming at the edge of the plume is proportional to some bulk velocity. In the presence of wind a key question is whether the additional stirring deforms eddies sufficiently to alter their mixing properties. In particular, under what conditions will wind effects enhance or reduce entrainment? Can these effects be captured in a modified form of the MTT similarity theory or is a new theory required? We use an extensive set of experiments on wind-forced turbulent plumes in order to overcome the restricted dynamical conditions explored in previous experimental studies. We introduce a new regime parameter allowing to quantitatively separate three distinct plume regimes. Remarkably, we show that for reasonable conditions on Earth, the major effects of wind can still be captured by a modified scaling law derived from the self-similar theory of MTT, with an entrainment rate including the contributions of wind. However, analysis of the turbulence motions in our experiments shows that even weak winds introduce large asymmetries in the structure of entraining eddies. Our successful application of a mean entrainment rate at the plume edge and a modified MTT similarity theory is, thus, surprising. Does this apparent contradiction simply reveal the way turbulent instabilities driven by wind manifest themselves?

  11. AW-101 entrained solids - Solubility versus temperature

    SciTech Connect

    GJ Lumetta; RC Lettau; GF Piepel

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the solubility of the solids entrained in the diluted AW-101 low-activity waste (LAW) sample. BNFL requested Battelle to dilute the AW-1-1 sample using de-ionized water to mimic expected plant operating conditions. BNFL further requested Battelle to assess the solubility of the solids present in the diluted AW-101 sample versus temperature conditions of 30, 40, and 50 C. BNFL requested these tests to assess the composition of the LAW supernatant and solids versus expected plant-operating conditions. The work was conducted according to test plan BNFL-TP-29953-7, Rev. 0, Determination of the Solubility of LAW Entrained Solids. The test went according to plan, with no deviations from the test plan.

  12. Exploring Entrainment Patterns of Human Emotion in Social Media.

    PubMed

    He, Saike; Zheng, Xiaolong; Zeng, Daniel; Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace. PMID:26953692

  13. Alignment strategies for the entrainment of music and movement rhythms.

    PubMed

    Moens, Bart; Leman, Marc

    2015-03-01

    Theories of entrainment assume that spontaneous entrainment emerges from dynamic laws that operate via mediators on interactions, whereby entrainment is facilitated if certain conditions are fulfilled. In this study, we show that mediators can be built that affect the entrainment of human locomotion to music. More specifically, we built D-Jogger, a music player that functions as a mediator between music and locomotion rhythms. The D-Jogger makes it possible to manipulate the timing differences between salient moments of the rhythms (beats and footfalls) through the manipulation of the musical period and phase, which affect the condition in which entrainment functions. We conducted several experiments to explore different strategies for manipulating the entrainment of locomotion and music. The results of these experiments showed that spontaneous entrainment can be manipulated, thereby suggesting different strategies on how to embark. The findings furthermore suggest a distinction among different modalities of entrainment: finding the beat (the most difficult part of entrainment), keeping the beat (easier, as a temporal scheme has been established), and being in phase (no entrainment is needed because the music is always adapted to the human rhythm). This study points to a new avenue of research on entrainment and opens new perspectives for the neuroscience of music. PMID:25773621

  14. Auditory-motor entrainment in vocal mimicking species

    PubMed Central

    2010-01-01

    We have recently found robust evidence of motor entrainment to auditory stimuli in multiple species of non-human animal, all of which were capable of vocal mimicry. In contrast, the ability remained markedly absent in many closely related species incapable of vocal mimicry. This suggests that vocal mimicry may be a necessary precondition for entrainment. However, within the vocal mimicking species, entrainment appeared non-randomly, suggesting that other components besides vocal mimicry play a role in the capacity and tendency to entrain. Here we discuss potential additional factors involved in entrainment. New survey data show that both male and female parrots are able to entrain, and that the entrainment capacity appears throughout the lifespan. We suggest routes for future study of entrainment, including both developmental studies in species known to entrain and further work to detect entrainment in species not well represented in our dataset. These studies may shed light on additional factors necessary for entrainment in addition to vocal mimicry. PMID:20714417

  15. Exploring Entrainment Patterns of Human Emotion in Social Media

    PubMed Central

    Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace. PMID:26953692

  16. On the use of crystalline admixtures in cement based construction materials: from porosity reducers to promoters of self healing

    NASA Astrophysics Data System (ADS)

    Ferrara, Liberato; Krelani, Visar; Moretti, Fabio

    2016-08-01

    The project detailed in this paper aims at a thorough characterization of the effects of crystalline admixtures, currently employed as porosity reducing admixtures, on the self-healing capacity of the cementitious composites, i.e. their capacity to completely or partially re-seal cracks and, in case, also exhibit recovery of mechanical properties. The problem has been investigated with reference to both a normal strength concrete (NSC) and a high performance fibre reinforced cementitious composite (HPFRCC). In the latter case, the influence of flow-induced fibre alignment has also been considered in the experimental investigation. With reference to either 3-point (for NSC) or 4-point (for HPFRCC) bending tests performed up to controlled crack opening and up to failure, respectively before and after exposure/conditioning recovery of stiffness and stress bearing capacity has been evaluated to assess the self-healing capacity. In a durability-based design framework, self-healing indices to quantify the recovery of mechanical properties will also be defined. In NSC, crystalline admixtures are able to promote up to 60% of crack sealing even under exposure to open air. In the case of HPFRCCs, which would already feature autogenous healing capacity because of their peculiar mix compositions, the synergy between the dispersed fibre reinforcement and the action of the crystalline admixture has resulted in a likely ‘chemical pre-stressing’ of the same reinforcement, from which the recovery of mechanical performance of the material has greatly benefited, up to levels even higher than the performance of the virgin un-cracked material.

  17. Rod Driven Frequency Entrainment and Resonance Phenomena.

    PubMed

    Salchow, Christina; Strohmeier, Daniel; Klee, Sascha; Jannek, Dunja; Schiecke, Karin; Witte, Herbert; Nehorai, Arye; Haueisen, Jens

    2016-01-01

    A controversy exists on photic driving in the human visual cortex evoked by intermittent photic stimulation. Frequency entrainment and resonance phenomena are reported for frequencies higher than 12 Hz in some studies while missing in others. We hypothesized that this might be due to different experimental conditions, since both high and low intensity light stimulation were used. However, most studies do not report radiometric measurements, which makes it impossible to categorize the stimulation according to photopic, mesopic, and scotopic vision. Low intensity light stimulation might lead to scotopic vision, where rod perception dominates. In this study, we investigated photic driving for rod-dominated visual input under scotopic conditions. Twelve healthy volunteers were stimulated with low intensity light flashes at 20 stimulation frequencies, leading to rod activation only. The frequencies were multiples of the individual alpha frequency (α) of each volunteer in the range from 0.40 to 2.30(∗)α. Three hundred and six-channel whole head magnetoencephalography recordings were analyzed in time, frequency, and spatiotemporal domains with the Topographic Matching Pursuit algorithm. We found resonance phenomena and frequency entrainment for stimulations at or close to the individual alpha frequency (0.90-1.10(∗)α) and half of the alpha frequency (0.40-0.55(∗)α). No signs of resonance and frequency entrainment phenomena were revealed around 2.00(∗)α. Instead, on-responses at the beginning and off-responses at the end of each stimulation train were observed for the first time in a photic driving experiment at frequencies of 1.30-2.30(∗)α, indicating that the flicker fusion threshold was reached. All results, the resonance and entrainment as well as the fusion effects, provide evidence for rod-dominated photic driving in the visual cortex. PMID:27588002

  18. Rod Driven Frequency Entrainment and Resonance Phenomena

    PubMed Central

    Salchow, Christina; Strohmeier, Daniel; Klee, Sascha; Jannek, Dunja; Schiecke, Karin; Witte, Herbert; Nehorai, Arye; Haueisen, Jens

    2016-01-01

    A controversy exists on photic driving in the human visual cortex evoked by intermittent photic stimulation. Frequency entrainment and resonance phenomena are reported for frequencies higher than 12 Hz in some studies while missing in others. We hypothesized that this might be due to different experimental conditions, since both high and low intensity light stimulation were used. However, most studies do not report radiometric measurements, which makes it impossible to categorize the stimulation according to photopic, mesopic, and scotopic vision. Low intensity light stimulation might lead to scotopic vision, where rod perception dominates. In this study, we investigated photic driving for rod-dominated visual input under scotopic conditions. Twelve healthy volunteers were stimulated with low intensity light flashes at 20 stimulation frequencies, leading to rod activation only. The frequencies were multiples of the individual alpha frequency (α) of each volunteer in the range from 0.40 to 2.30∗α. Three hundred and six-channel whole head magnetoencephalography recordings were analyzed in time, frequency, and spatiotemporal domains with the Topographic Matching Pursuit algorithm. We found resonance phenomena and frequency entrainment for stimulations at or close to the individual alpha frequency (0.90–1.10∗α) and half of the alpha frequency (0.40–0.55∗α). No signs of resonance and frequency entrainment phenomena were revealed around 2.00∗α. Instead, on-responses at the beginning and off-responses at the end of each stimulation train were observed for the first time in a photic driving experiment at frequencies of 1.30–2.30∗α, indicating that the flicker fusion threshold was reached. All results, the resonance and entrainment as well as the fusion effects, provide evidence for rod-dominated photic driving in the visual cortex. PMID:27588002

  19. Diurnally entrained anticipatory behavior in archaea.

    PubMed

    Whitehead, Kenia; Pan, Min; Masumura, Ken-ichi; Bonneau, Richard; Baliga, Nitin S

    2009-01-01

    By sensing changes in one or few environmental factors biological systems can anticipate future changes in multiple factors over a wide range of time scales (daily to seasonal). This anticipatory behavior is important to the fitness of diverse species, and in context of the diurnal cycle it is overall typical of eukaryotes and some photoautotrophic bacteria but is yet to be observed in archaea. Here, we report the first observation of light-dark (LD)-entrained diurnal oscillatory transcription in up to 12% of all genes of a halophilic archaeon Halobacterium salinarum NRC-1. Significantly, the diurnally entrained transcription was observed under constant darkness after removal of the LD stimulus (free-running rhythms). The memory of diurnal entrainment was also associated with the synchronization of oxic and anoxic physiologies to the LD cycle. Our results suggest that under nutrient limited conditions halophilic archaea take advantage of the causal influence of sunlight (via temperature) on O(2) diffusivity in a closed hypersaline environment to streamline their physiology and operate oxically during nighttime and anoxically during daytime. PMID:19424498

  20. Compatibility of repair mortar with migrating corrosion inhibiting admixtures

    SciTech Connect

    Bjegovic, D.; Ukrainczyk, V.; Ukrainczyk, B.; Miksic, B.

    1997-08-01

    One of the methods for corrosion protection of reinforced concrete is the use of migrating corrosion inhibitor as an admixture in repair mortars. The admixture must be effective for corrosion protection and compatible with polymers added to repair mortar to improve properties of fresh and hardened mortar. This paper presents experimental results on compatibility of a migrating corrosion inhibitor added to two repair mortars based on an inorganic binder modified with polymers. The influence of a migrating inhibitor on the properties of fresh and hardened mortars was tested. The effectiveness on reinforcement corrosion protection has been tested according to ASTM G 109. Test results prove that the investigated migrating inhibitor is compatible with repair mortars and that it delays corrosion of the reinforcement.

  1. Admixture facilitates genetic adaptations to high altitude in Tibet

    PubMed Central

    Jeong, Choongwon; Alkorta-Aranburu, Gorka; Basnyat, Buddha; Neupane, Maniraj; Witonsky, David B.; Pritchard, Jonathan K.; Beall, Cynthia M.; Di Rienzo, Anna

    2015-01-01

    Admixture is recognized as a widespread feature of human populations, renewing interest in the possibility that genetic exchange can facilitate adaptations to new environments. Studies of Tibetans revealed candidates for high-altitude adaptations in the EGLN1 and EPAS1 genes, associated with lower hemoglobin concentration. However, the history of these variants or that of Tibetans remains poorly understood. Here, we analyze genotype data for the Nepalese Sherpa, and find that Tibetans are a mixture of ancestral populations related to the Sherpa and Han Chinese. EGLN1 and EPAS1 genes show a striking enrichment of high-altitude ancestry in the Tibetan genome, indicating that migrants from low altitude acquired adaptive alleles from the highlanders. Accordingly, the Sherpa and Tibetans share adaptive hemoglobin traits. This admixture-mediated adaptation shares important features with adaptive introgression. Therefore, we identify a novel mechanism, beyond selection on new mutations or on standing variation, through which populations can adapt to local environments. PMID:24513612

  2. The phenotypic legacy of admixture between modern humans and Neandertals.

    PubMed

    Simonti, Corinne N; Vernot, Benjamin; Bastarache, Lisa; Bottinger, Erwin; Carrell, David S; Chisholm, Rex L; Crosslin, David R; Hebbring, Scott J; Jarvik, Gail P; Kullo, Iftikhar J; Li, Rongling; Pathak, Jyotishman; Ritchie, Marylyn D; Roden, Dan M; Verma, Shefali S; Tromp, Gerard; Prato, Jeffrey D; Bush, William S; Akey, Joshua M; Denny, Joshua C; Capra, John A

    2016-02-12

    Many modern human genomes retain DNA inherited from interbreeding with archaic hominins, such as Neandertals, yet the influence of this admixture on human traits is largely unknown. We analyzed the contribution of common Neandertal variants to over 1000 electronic health record (EHR)-derived phenotypes in ~28,000 adults of European ancestry. We discovered and replicated associations of Neandertal alleles with neurological, psychiatric, immunological, and dermatological phenotypes. Neandertal alleles together explained a significant fraction of the variation in risk for depression and skin lesions resulting from sun exposure (actinic keratosis), and individual Neandertal alleles were significantly associated with specific human phenotypes, including hypercoagulation and tobacco use. Our results establish that archaic admixture influences disease risk in modern humans, provide hypotheses about the effects of hundreds of Neandertal haplotypes, and demonstrate the utility of EHR data in evolutionary analyses. PMID:26912863

  3. The phenotypic legacy of admixture between modern humans and Neanderthals

    PubMed Central

    Simonti, Corinne N.; Vernot, Benjamin; Bastarache, Lisa; Bottinger, Erwin; Carrell, David S.; Chisholm, Rex L.; Crosslin, David R.; Hebbring, Scott J.; Jarvik, Gail P.; Kullo, Iftikhar J.; Li, Rongling; Pathak, Jyotishman; Ritchie, Marylyn D.; Roden, Dan M.; Verma, Shefali S.; Tromp, Gerard; Prato, Jeffrey D.; Bush, William S.; Akey, Joshua M.; Denny, Joshua C.; Capra, John A.

    2016-01-01

    Many modern human genomes retain DNA inherited from interbreeding with archaic hominins, such as Neanderthals, yet the influence of this admixture on human traits is largely unknown. We analyzed the contribution of common Neanderthal variants to over 1,000 electronic health record (EHR)-derived phenotypes in ~28,000 adults of European ancestry. We discovered and replicated associations of Neanderthal alleles with neurological, psychiatric, immunological, and dermatological phenotypes. Neanderthal alleles together explain a significant fraction of the variation in risk for depression and skin lesions resulting from sun exposure (actinic keratosis), and individual Neanderthal alleles are significantly associated with specific human phenotypes, including hypercoagulation and tobacco use. Our results establish that archaic admixture influences disease risk in modern humans, provide hypotheses about the effects of hundreds of Neanderthal haplotypes and demonstrate the utility of EHR data in evolutionary analyses. PMID:26912863

  4. Adsorption of superplasticizer admixtures on alkali-activated slag pastes

    SciTech Connect

    Palacios, M. Houst, Y.F.; Bowen, P.; Puertas, F.

    2009-08-15

    Alkali-activated slag (AAS) binders are obtained by a manufacturing process less energy-intensive than ordinary Portland cement (OPC) and involves lower greenhouse gasses emission. These alkaline cements allow the production of high mechanical strength and durable concretes. In the present work, the adsorption of different superplasticizer admixtures (naphthalene-based, melamine-based and a vinyl copolymer) on the slag particles in AAS pastes using alkaline solutions with different pH values have been studied in detail. The effect of the superplasticizers on the yield stress and plastic viscosity of the AAS and OPC pastes have been also evaluated. The results obtained allowed us to conclude that the adsorption of the superplasticizers on AAS pastes is independent of the pH of the alkaline solutions used and lower than on OPC pastes. However, the effect of the admixtures on the rheological parameters depends directly on the type and dosage of the superplasticizer as well as of the binder used and, in the case of the AAS, on the pH of the alkaline activator solution. In 11.7-pH NaOH-AAS pastes the dosages of the superplasticizers required to attain similar reduction in the yield stress are ten-fold lower than for Portland cement. In this case the superplasticizers studied show a fluidizing effect considerably higher in 11.7-pH NaOH-AAS pastes than in OPC pastes. In 13.6-pH NaOH-AAS pastes, the only admixture observed to affect the rheological parameters is the naphthalene-based admixture due to its higher chemical stability in such extremely alkaline media.

  5. Admixture mapping identifies introgressed genomic regions in North American canids.

    PubMed

    vonHoldt, Bridgett M; Kays, Roland; Pollinger, John P; Wayne, Robert K

    2016-06-01

    Hybrid zones typically contain novel gene combinations that can be tested by natural selection in a unique genetic context. Parental haplotypes that increase fitness can introgress beyond the hybrid zone, into the range of parental species. We used the Affymetrix canine SNP genotyping array to identify genomic regions tagged by multiple ancestry informative markers that are more frequent in an admixed population than expected. We surveyed a hybrid zone formed in the last 100 years as coyotes expanded their range into eastern North America. Concomitant with expansion, coyotes hybridized with wolves and some populations became more wolflike, such that coyotes in the northeast have the largest body size of any coyote population. Using a set of 3102 ancestry informative markers, we identified 60 differentially introgressed regions in 44 canines across this admixture zone. These regions are characterized by an excess of exogenous ancestry and, in northeastern coyotes, are enriched for genes affecting body size and skeletal proportions. Further, introgressed wolf-derived alleles have penetrated into Southern US coyote populations. Because no wolves currently exist in this area, these alleles are unlikely to have originated from recent hybridization. Instead, they probably originated from intraspecific gene flow or ancient admixture. We show that grey wolf and coyote admixture has far-reaching effects and, in addition to phenotypically transforming admixed populations, allows for the differential movement of alleles from different parental species to be tested in new genomic backgrounds. PMID:27106273

  6. Genetic admixture and obesity: recent perspectives and future applications

    PubMed Central

    Fernández, José R.; Pearson, Keith E.; Kell, Kenneth P.; Brown, Michelle M. Bohan

    2013-01-01

    The process of the colonization of the New World that occurred centuries ago served as a natural experiment, creating unique combinations of genetic material in newly formed admixed populations. The identification and genotyping of ancestry informative markers (AIMs) have allowed for the estimation of proportions of ancestral parental populations among individuals in a sample through the genetic admixture approach. These admixture estimates have been used in different ways to understand the genetic contributions to individual variation in obesity and body composition parameters, particularly among diverse admixed groups known to differ in obesity prevalence within the United States. Although progress has been made through the use of genetic admixture approaches, future investigations are needed in order to explore the interaction of environmental factors with the degree of genetic ancestry in individuals. A challenge to confront at this time would be to further stratify and define environments in progressively more granular terms, including nutrients, muscle biology, stress responses at the cellular level, and the social and built environments. PMID:24081225

  7. Recent admixture in an Indian population of African ancestry.

    PubMed

    Narang, Ankita; Jha, Pankaj; Rawat, Vimal; Mukhopadhyay, Arijit; Mukhopadhayay, Arijit; Dash, Debasis; Basu, Analabha; Mukerji, Mitali

    2011-07-15

    Identification and study of genetic variation in recently admixed populations not only provides insight into historical population events but also is a powerful approach for mapping disease loci. We studied a population (OG-W-IP) that is of African-Indian origin and has resided in the western part of India for 500 years; members of this population are believed to be descendants of the Bantu-speaking population of Africa. We have carried out this study by using a set of 18,534 autosomal markers common between Indian, CEPH-HGDP, and HapMap populations. Principal-components analysis clearly revealed that the African-Indian population derives its ancestry from Bantu-speaking west-African as well as Indo-European-speaking north and northwest Indian population(s). STRUCTURE and ADMIXTURE analyses show that, overall, the OG-W-IPs derive 58.7% of their genomic ancestry from their African past and have very little inter-individual ancestry variation (8.4%). The extent of linkage disequilibrium also reveals that the admixture event has been recent. Functional annotation of genes encompassing the ancestry-informative markers that are closer in allele frequency to the Indian ancestral population revealed significant enrichment of biological processes, such as ion-channel activity, and cadherins. We briefly examine the implications of determining the genetic diversity of this population, which could provide opportunities for studies involving admixture mapping. PMID:21737057

  8. Genetic admixture, self-reported ethnicity, self-estimated admixture, and skin pigmentation among Hispanics and Native Americans.

    PubMed

    Klimentidis, Yann C; Miller, Geoffrey F; Shriver, Mark D

    2009-04-01

    The relationship between ethnicity and biology is of interest to anthropologists, biomedical scientists, and historians in understanding how human groups are constructed. Ethnic self-identification in recently admixed groups such as Hispanics, African Americans, and Native Americans (NA) is likely to be complex due to the heterogeneity in individual admixture proportions and social environments within these groups. This study examines the relationships between self-identified ethnicity, self-estimated admixture proportions, skin pigmentation, and genetic marker estimated admixture proportions. These measures were assessed using questionnaires, skin color measurements, and genotyping of a panel of 76 ancestry informative markers, among 170 Hispanics and NAs from New Mexico, a state known for its complex history of interactions between people of NA and European (EU) ancestry. Results reveal that NAs underestimate their degree of EU admixture, and that Hispanics underestimate their degree of NA admixture. Within Hispanics, genetic-marker estimated admixture is better predicted by forehead skin pigmentation than by self-estimated admixture. We also find that Hispanic individuals self-identified as "half-White, half Hispanic" and "Spanish" have lower levels of NA admixture than those self-identified as "Mexican" and "Mexican American." Such results highlight the interplay between culture and biology in how individuals identify and view themselves, and have implications for how ethnicity and disease risk are assessed in a medical setting. PMID:18951390

  9. Foaming and Antifoaming and Gas Entrainment in Radioactive Waste Preteatment and Immobilization Processes

    SciTech Connect

    Wasan, Darsh T.; Nikolov, Alex

    2005-06-01

    The objectives of this research effort are to develop a fundamental understanding of the physico-chemical mechanisms that produce foaming and air entrainment in the DOE High Level (HLW) and Low Activity (LAW) radioactive waste separation and immobilization processes, and to develop and test advanced antifoam/defoaming/rheology modifier agents. Antifoams/rheology modifiers developed from this research will be tested using non-radioactive simulants of the radioactive wastes obtained from Hanford and the Savannah River Site (SRS).

  10. The influence of entrainment-induced variability of cloud microphysics on the chemical composition of cloudwater

    NASA Astrophysics Data System (ADS)

    Walcek, Chris J.; Brankov, Elvira

    We propose a mechanism by which condensed water within clouds becomes chemically heterogeneous due to the turbulent nature of entrainment of noncloudy air into a rising cloudy parcel. We hypothesize that the observed small-scale variability of cloud microphysics, temperature and vertical velocity results from the formation of turbulent-scale sub-regions composed of varying proportions of undiluted cloudy air mixed with dry, cloud-free air above cloud base. Cloudy regions that are exposed to a higher degree of entrainment will contain lower condensed water contents, lower temperatures, lower droplet number concentrations at smaller sizes, and lower vertical velocities as a result of entrainment-induced dilution and evaporation. Greater entrainment will also increase concentrations of sulfate, nitrate and ammonium in cloudwater, and will lead to a size-dependent chemical composition of cloudwater across the range of entrainment mixtures. We find significant discrepancies between calculated SO 2 oxidation rates that account for turbulent-scale variability, relative to simpler calculations that ignore turbulent-induced variability. The more exact description of a cloud composed of a heterogeneous mix of parcels yields higher sulfur oxidation rates and lower dissolved concentrations of highly soluble sulfate, nitrate and ammonia. Most current measurements and models of cloudwater chemical composition cannot resolve the fine structure of entrainment-induced fluctuations in cloud microphysics, and therefore implicitly "average out" small-scale fluctuations of momentum, heat, buoyancy and water substance within the measurement volume or numerical grid. This averaging can lead to erroneous interpretations of measurements, and may yield biased calculations of SO 2 oxidation within clouds. Using measured concentrations of pertinent air quality concentrations in conjunction with a relatively simple regional-scale atmospheric chemistry model, we find that during most of the

  11. Entrained liquid fraction calculation in adiabatic disperse-annular flows at low rate in film

    NASA Astrophysics Data System (ADS)

    Yagov, V. V.; Minko, M. V.

    2016-04-01

    In this work, we continue our study [1] and extend further an approach to low reduced pressures. An approximate model of droplets entrainment from the laminar film surface and an equation for calculating entrainment intensity are proposed. To carry out direct verification of this equation using experimental data is extremely difficult because the integral effect—liquid flow rate in a film at a dynamic equilibrium between entrainment and deposition—is usually measured in the experiments. The balance between flows of droplets entrainment and deposition corresponds to the dynamic equilibrium because of turbulent diffusion. The transcendental equation, which was obtained on the basis of this balance, contains one unknown numerical factor and allows one to calculate the liquid rate. Comparing calculation results with the experimental data for the water-air and water-helium flows at low reduced pressures (less than 0.03) has shown their good agreement at the universal value of a numerical constant, if an additional dimensionless parameter, a fourth root of vaporliquid densities ratio, is introduced. The criterion that determines the boundary of using methods of this work and that of [1] in calculations and that reflects effect of pressure and state of film surface on distribution of the liquid in the annular flow is proposed; the numerical value of this criterion has been determined.

  12. Viscous-inviscid calculations of jet entrainment effects on the subsonic flow over nozzle afterbodies

    NASA Technical Reports Server (NTRS)

    Wilmoth, R. G.

    1980-01-01

    A viscous-inviscid interaction model was developed to account for jet entrainment effects in the prediction of the subsonic flow over nozzle afterbodies. The model is based on the concept of a weakly interacting shear layer in which the local streamline deflections due to entrainment are accounted for by a displacement-thickness type of correction to the inviscid plume boundary. The entire flow field is solved in an iterative manner to account for the effects on the inviscid external flow of the turbulent boundary layer, turbulent mixing and chemical reactions in the shear layer, and the inviscid jet exhaust flow. The components of the computational model are described, and numerical results are presented to illustrate the interactive effects of entrainment on the overall flow structure. The validity of the model is assessed by comparisons with data obtained form flow-field measurements on cold-air jet exhausts. Numerical results and experimental data are also given to show the entrainment effects on nozzle boattail drag under various jet exhaust and free-stream flow conditions.

  13. Entrainment and detrainment required to explain updraft properties and work dissipation

    NASA Astrophysics Data System (ADS)

    Michaud, L. M.

    1998-05-01

    A one-dimensional thermodynamic entrainment-detrainment model is used to determine updraft virtual temperature excess, updraft velocity, other updraft properties from sounding data. The model correctly predicts most updraft properties explains how work of buoyancy is dissipated. The unique feature of the model is that fractional entrainment detrainment are both functions of the virtual temperature excess of the updraft independent of updraft mass or diameter. The updraft temperature composition are rigorously determined before updraft velocity is considered. The entrainment detrainment functions allow the flows in out of the updraft to vary in a physically realistic way are used from the base of the sounding to cloud top. The model limits the growth of cumulus under conditions of dry air aloft. The model shows that entrainment inhibits deep convection. The model predicts higher intensity for continental than for oceanic updrafts. High humidity at the bottom of the atmosphere decreases the intensity of the updrafts because it lowers the condensation level, the level at which evaporative cooling comes into play. High humidity aloft increases the intensity of the updrafts because it reduced evaporative cooling.

  14. Liquid entrainment at an upward oriented vertical branch line from a horizontal pipe

    NASA Astrophysics Data System (ADS)

    Welter, Kent Byron

    Under simulated accident conditions, tees in the primary coolant loop of a Pressurized Water Reactor (PWR) can deviate from their original design purpose and become separators that effectively remove core heat sink capacity. This method of primary coolant removal is a phenomenological subset of phase separation known as liquid entrainment, whereby liquid is forced from its original path by the inertia of the gas. A comprehensive literature review revealed common deficiencies in previous studies. The Westinghouse AP600 advanced reactor design was chosen to assess the validity of entrainment models. Following a systematic scaling analysis of the prototypic design a model separate effects test was proposed and constructed at Oregon State University. Just under 100 tests were run to fill the deficiencies found in the literature review. New data from the Air-water Test Loop for Advanced Thermal-hydraulic Studies (ATLATS) could not be predicted by published correlations. A new theoretical model for predicting liquid entrainment onset and steady state entrainment was developed. Comparison with all available data shows a marked improvement for predicting the mass flow rate out the vertical branch.

  15. Entrainment in oscillatory zero-mean flow

    NASA Astrophysics Data System (ADS)

    Medina, P.; Sanchez, M. A.

    2009-04-01

    The dynamical processes associated with the stably stratified atmospheric boundary layer or in the ocean thermocline are less well understood than those of its convective counterparts. This is due to its complexity, and the fact that buoyancy reduces entrainment across density interfaces. We present results on a series of laboratory experiments where a sharp density interface generated by either salt concentration or heat, advances due to grid stirred turbulence. We parametrize the level of buoyancy at the density interface by a local Richardson number defined in terms of the density difference across the interface, which may be due to a temperature or salinity jump. L is the integral lengthscale and u' is the r.m.s. velocity scale. So Ri = C L/u 2. The laboratory experiments were designed to compare the entrainment produced by zero-mean turbulence in heat or salt density interfaces. In the experiment we used a small perspex box of 15 by 10 cm in base, a small mesh grid (M= 0.8 cm ) driven by a motor. So as to generate the density interface by disolving salt in the bottom layer of the water column or by heating the top layer, we added the top light layer, which had a density difference carefully set up by means of a sponge float. The grid was set to oscillate with fixed frequency and stroke at the begining of the experiment and the velocity of advance of the interface Ve was measured by looking at a Shadowgraph or by video recording. The turbulent parameters are derived from previous measurements as a function of the distance between the grid center and the interface z as: l = 0.1 z and the turbulent velocity údecays inversely proportinal to the distance z. There are several mechanisms that produce mixing across the density interface. And there is a dependence of the Prandtl number on the Entrainment law. The entrainment is a power function of the local Richardson number, and the value of the empirical exponent n(Ri,Pr) is compared with previous results. The

  16. The ecology of entrainment: Foundations of coordinated rhythmic movement

    PubMed Central

    Phillips-Silver, Jessica; Aktipis, C. Athena; Bryant, Gregory A.

    2011-01-01

    Entrainment has been studied in a variety of contexts including music perception, dance, verbal communication and motor coordination more generally. Here we seek to provide a unifying framework that incorporates the key aspects of entrainment as it has been studied in these varying domains. We propose that there are a number of types of entrainment that build upon pre-existing adaptations that allow organisms to perceive stimuli as rhythmic, to produce periodic stimuli, and to integrate the two using sensory feedback. We suggest that social entrainment is a special case of spatiotemporal coordination where the rhythmic signal originates from another individual. We use this framework to understand the function and evolutionary basis for coordinated rhythmic movement and to explore questions about the nature of entrainment in music and dance. The framework of entrainment presented here has a number of implications for the vocal learning hypothesis and other proposals for the evolution of coordinated rhythmic behavior across an array of species. PMID:21776183

  17. AN-107 entrained solids - Solubility versus temperature

    SciTech Connect

    GJ Lumetta; RC Lettau

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the solubility of the solids entrained in the diluted AN-107 low-activity waste (LAW) sample. BNFL requested Battelle to dilute the AN-107 sample using sodium hydroxide and de-ionized water to mimic expected plant operating conditions. BNFL further requested Battelle to assess the solubility of the solids present in the diluted AN-107 sample versus temperature conditions of 30, 40, and 50 C. BNFL requested these tests to assess the composition of the LAW supernatant and solids versus expected plant-operating conditions.

  18. Entrainment and mixing in thrust augmenting ejectors

    NASA Technical Reports Server (NTRS)

    Bernal, L.; Sarohia, V.

    1983-01-01

    An experimental investigation of two-dimensional thrust augmenting ejector flows has been conducted. Measurements of the shroud surface pressure distribution, mean velocity, turbulent intensities and Reynolds stresses were made in two shroud geometries at various primary nozzle pressure ratios. The effects of shroud geometry and primary nozzle pressure ratio on the shroud surface pressure distribution, mean flow field and turbulent field were determined. From these measurements the evolution of mixing within the shroud of the primary flow and entrained fluid was obtained. The relationship between the mean flow field, the turbulent field and the shroud surface pressure distribution is discussed.

  19. On-line ultrasonic gas entrainment monitor

    DOEpatents

    Day, Clifford K.; Pedersen, Herbert N.

    1978-01-01

    Apparatus employing ultrasonic energy for detecting and measuring the quantity of gas bubbles present in liquids being transported through pipes. An ultrasonic transducer is positioned along the longitudinal axis of a fluid duct, oriented to transmit acoustic energy radially of the duct around the circumference of the enclosure walls. The back-reflected energy is received centrally of the duct and interpreted as a measure of gas entrainment. One specific embodiment employs a conical reflector to direct the transmitted acoustic energy radially of the duct and redirect the reflected energy back to the transducer for reception. A modified embodiment employs a cylindrical ultrasonic transducer for this purpose.

  20. Properties of high-performance concrete containing shrinkage-reducing admixture

    SciTech Connect

    Folliard, K.J.; Berke, N.S.

    1997-09-01

    The effects of a recently developed shrinkage-reducing admixture on high-performance concrete properties are described. High-performance concrete mixtures containing silica fume were cast with and without shrinkage-reducing admixture. The mechanical properties, drying shrinkage, and resistance to restrained shrinkage cracking were investigated. The results show that the shrinkage-reducing admixture effectively reduced the shrinkage of high-performance concrete, and resulted in a significant decrease in restrained shrinkage cracking.

  1. Dating the age of admixture via wavelet transform analysis of genome-wide data.

    PubMed

    Pugach, Irina; Matveyev, Rostislav; Wollstein, Andreas; Kayser, Manfred; Stoneking, Mark

    2011-01-01

    We describe a PCA-based genome scan approach to analyze genome-wide admixture structure, and introduce wavelet transform analysis as a method for estimating the time of admixture. We test the wavelet transform method with simulations and apply it to genome-wide SNP data from eight admixed human populations. The wavelet transform method offers better resolution than existing methods for dating admixture, and can be applied to either SNP or sequence data from humans or other species. PMID:21352535

  2. Dating the age of admixture via wavelet transform analysis of genome-wide data

    PubMed Central

    2011-01-01

    We describe a PCA-based genome scan approach to analyze genome-wide admixture structure, and introduce wavelet transform analysis as a method for estimating the time of admixture. We test the wavelet transform method with simulations and apply it to genome-wide SNP data from eight admixed human populations. The wavelet transform method offers better resolution than existing methods for dating admixture, and can be applied to either SNP or sequence data from humans or other species. PMID:21352535

  3. Conditions for super-adiabatic droplet growth after entrainment mixing

    NASA Astrophysics Data System (ADS)

    Yang, Fan; Shaw, Raymond; Xue, Huiwen

    2016-07-01

    Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixed parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the "super-adiabatic" growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. The findings have implications for the origin of large cloud droplets that may contribute to onset of collision-coalescence in warm clouds.

  4. Conditions for super-adiabatic droplet growth after entrainment mixing

    DOE PAGESBeta

    Yang, Fan; Shaw, Raymond; Xue, Huiwen

    2016-07-29

    Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixedmore » parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the “super-adiabatic” growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. The findings have implications for the origin of large cloud droplets that may contribute to onset of collision–coalescence in warm clouds.« less

  5. Entrainment of Vertical Jets in Turbulent Cross Flow

    NASA Astrophysics Data System (ADS)

    Freedland, Graham; Roberts, Karen; Mastin, Larry; Solovitz, Stephen; Cal, Raul

    2015-11-01

    Volcanic eruptions produce high concentrations of ash that produce clouds in the atmosphere that are hazardous for private and commercial aviation. Without accurate models to predict ash concentrations, air traffic is unable to safely navigate ash clouds downwind of an eruption as critical concentrations are difficult to identify visually. Current models rely on inputs such as plume height, eruptive dissipation and cross-flow wind speeds as well as empirical parameters such as the entrainment ratio between the cross-flow and the plume velocity. A wind tunnel experiment has been designed to investigate these models by injecting air orthogonally into a cross-flow. The ratio of the cross-flow and jet velocities is varied to simulate a weak plume and flow response is measured using particle image velocimetry. Grids upstream of the plume create different turbulence intensities, which, combined with different jet geometries, allow us to study the flow field, mean and second order moments and thereby obtain information to accurately model volcanic ash concentrations in the atmosphere.

  6. Entrainment, Drizzle, and the Indirect Effect in Stratiform Clouds

    NASA Technical Reports Server (NTRS)

    Ackerman, Andrew

    2005-01-01

    Activation of some fraction of increased concentrations of sub-micron soluble aerosol particles lead to enhanced cloud droplet concentrations and hence smaller droplets, increasing their total cross sectional area and thus reflecting solar radiation more efficiently (the Twomey, or first indirect, effect). However, because of competition during condensational growth, droplet distributions tend to broaden as numbers increase, reducing the sensitivity of cloud albedo to droplet concentration on the order of 10%. Also, smaller droplets less effectively produce drizzle through collisions and coalescence, and it is widely expected (and found in large-scale models) that decreased precipitation leads to clouds with more cloud water on average (the so-called cloud lifetime, or second indirect, effect). Much of the uncertainty regarding the overall indirect aerosol effect stems from inadequate understanding of such changes in cloud water. Detailed simulations based on FIRE-I, ASTEX, and DYCOMS-II conditions show that suppression of precipitation from increased droplet concentrations leads to increased cloud water only when sufficient precipitation reaches the surface, a condition favored when the overlying air is-humid or droplet concentrations are very low. Otherwise, aerosol induced suppression of precipitation enhances entrainment of overlying dry air, thereby reducing cloud water and diminishing the indirect climate forcing.

  7. The effect of entrainment on starting vortices

    NASA Astrophysics Data System (ADS)

    Rosi, Giuseppe; Rival, David

    2015-11-01

    Recent work shows that vortex detachment behind accelerating plates coincides with when streamlines enclosing the starting vortex (SV) form a full saddle. In the case of a linearly accelerating plate, it can be shown that vorticity-containing mass, and thus the SV's development scale with only dimensionless towed distance, while the SV's circulation scales with the acceleration rate. This results in shear-layer instabilities whose structure is Reynold-number independent, but whose strength scale with Reynolds number. It is hypothesized that the increased strength of the instabilities promotes entrainment, which causes the formation of the full saddle and thereby detachment to occur at an earlier dimensionless towed distance. To test this hypothesis, a circular plate is linearly accelerated from rest to pinch-off with chord-based Reynolds numbers of 103, 104, and 105 at the midpoint of the motion. Planar PIV data is acquired, from which FTLE and enstrophy fields are calculated. Vortex detachment is identified from the dynamics of the FTLE saddles, while the enstrophy fields are used to calculate both the vorticity-containing mass entering from the shear layer and the mass entrained from the quiescent surroundings.

  8. Stochastic entrainment of a stochastic oscillator.

    PubMed

    Wang, Guanyu; Peskin, Charles S

    2015-11-01

    In this work, we consider a stochastic oscillator described by a discrete-state continuous-time Markov chain, in which the states are arranged in a circle, and there is a constant probability per unit time of jumping from one state to the next in a specified direction around the circle. At each of a sequence of equally spaced times, the oscillator has a specified probability of being reset to a particular state. The focus of this work is the entrainment of the oscillator by this periodic but stochastic stimulus. We consider a distinguished limit, in which (i) the number of states of the oscillator approaches infinity, as does the probability per unit time of jumping from one state to the next, so that the natural mean period of the oscillator remains constant, (ii) the resetting probability approaches zero, and (iii) the period of the resetting signal approaches a multiple, by a ratio of small integers, of the natural mean period of the oscillator. In this distinguished limit, we use analytic and numerical methods to study the extent to which entrainment occurs. PMID:26651734

  9. Observing of entrainment using small UAS

    NASA Astrophysics Data System (ADS)

    Martin, S.; Bange, J.; Beyrich, F.

    2012-04-01

    Entrainment processes between the atmospheric boundary layer and the free atmosphere are important concerning vertical exchange of momentum, energy, water vapor, trace gases and aerosol. The transition zone between the convectively mixed boundary layer and the stably stratified free atmosphere is called the entrainment zone (EZ). The EZ restrains the domain of turbulence by a temperature inversion and acts as a lid to pollutants. Measurement flights of the mini meteorological aerial vehicle (M2AV) of the Technische Universität Braunschweig were performed in spring 2011 to determine the capability of the unmanned aerial system (UAS) to measure the structure of the EZ. The campaign took place at the Meteorological Observatory Lindenberg / Richard-Aßmann-Observatory of the German Meteorological Service, which is located close to Berlin. Besides the M2AV flights, standard observations were performed by a 12 m and 99 m tower, a sodar, ceilometer and radiosondes. A tethered balloon with measurement units at six different levels was operated especially for this campaign. The measurements of these systems were used to determine the inversion layer and to capture its diurnal cycle. The talk will be focused on vertical profiles of the M2AV up to the free atmosphere, detailed analysis of spatial series of w'θ' at different altitudes and on vertical profiles of normalized variances of the vertical wind component and the potential temperature.

  10. A Genome-wide Analysis of Admixture in Uyghurs and a High-Density Admixture Map for Disease-Gene Discovery

    PubMed Central

    Xu, Shuhua; Jin, Li

    2008-01-01

    Following up on our previous study, we conducted a genome-wide analysis of admixture for two Uyghur population samples (HGDP-UG and PanAsia-UG), collected from the northern and southern regions of Xinjiang in China, respectively. Both HGDP-UG and PanAsia-UG showed a substantial admixture of East-Asian (EAS) and European (EUR) ancestries, with an empirical estimation of ancestry contribution of 53:47 (EAS:EUR) and 48:52 for HGDP-UG and PanAsia-UG, respectively. The effective admixture time under a model with a single pulse of admixture was estimated as 110 generations and 129 generations, or admixture events occurred about 2200 and 2580 years ago for HGDP-UG and PanAsia-UG, respectively, assuming an average of 20 yr per generation. Despite Uyghurs' earlier history compared to other admixture populations, admixture mapping, holds promise for this population, because of its large size and its mixture of ancestry from different continents. We screened multiple databases and identified a genome-wide single-nucleotide polymorphism panel that can distinguish EAS and EUR ancestry of chromosomal segments in Uyghurs. The panel contains 8150 ancestry-informative markers (AIMs) showing large frequency differences between EAS and EUR populations (FST > 0.25, mean FST = 0.43) but small frequency differences (7999 AIMs validated) within both populations (FST < 0.05, mean FST < 0.01). We evaluated the effectiveness of this admixture map for localizing disease genes in two Uyghur populations. To our knowledge, our map constitutes the first practical resource for admixture mapping in Uyghurs, and it will enable studies of diseases showing differences in genetic risk between EUR and EAS populations. PMID:18760393

  11. Complex Patterns of Genomic Admixture within Southern Africa

    PubMed Central

    Petersen, Desiree C.; Libiger, Ondrej; Tindall, Elizabeth A.; Hardie, Rae-Anne; Hannick, Linda I.; Glashoff, Richard H.; Mukerji, Mitali; Fernandez, Pedro; Haacke, Wilfrid; Schork, Nicholas J.; Hayes, Vanessa M.

    2013-01-01

    Within-population genetic diversity is greatest within Africa, while between-population genetic diversity is directly proportional to geographic distance. The most divergent contemporary human populations include the click-speaking forager peoples of southern Africa, broadly defined as Khoesan. Both intra- (Bantu expansion) and inter-continental migration (European-driven colonization) have resulted in complex patterns of admixture between ancient geographically isolated Khoesan and more recently diverged populations. Using gender-specific analysis and almost 1 million autosomal markers, we determine the significance of estimated ancestral contributions that have shaped five contemporary southern African populations in a cohort of 103 individuals. Limited by lack of available data for homogenous Khoesan representation, we identify the Ju/'hoan (n = 19) as a distinct early diverging human lineage with little to no significant non-Khoesan contribution. In contrast to the Ju/'hoan, we identify ancient signatures of Khoesan and Bantu unions resulting in significant Khoesan- and Bantu-derived contributions to the Southern Bantu amaXhosa (n = 15) and Khoesan !Xun (n = 14), respectively. Our data further suggests that contemporary !Xun represent distinct Khoesan prehistories. Khoesan assimilation with European settlement at the most southern tip of Africa resulted in significant ancestral Khoesan contributions to the Coloured (n = 25) and Baster (n = 30) populations. The latter populations were further impacted by 170 years of East Indian slave trade and intra-continental migrations resulting in a complex pattern of genetic variation (admixture). The populations of southern Africa provide a unique opportunity to investigate the genomic variability from some of the oldest human lineages to the implications of complex admixture patterns including ancient and recently diverged human lineages. PMID:23516368

  12. Interethnic admixture and the evolution of Latin American populations

    PubMed Central

    Salzano, Francisco Mauro; Sans, Mónica

    2014-01-01

    A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues. PMID:24764751

  13. Interethnic admixture and the evolution of Latin American populations.

    PubMed

    Salzano, Francisco Mauro; Sans, Mónica

    2014-03-01

    A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues. PMID:24764751

  14. Whistler Solitons in Plasma with Anisotropic Hot Electron Admixture

    NASA Technical Reports Server (NTRS)

    Khazanov, G. V.; Krivorutsky, E. N.; Gallagher, D. L.

    1999-01-01

    The longitudinal and transverse modulation instability of whistler waves in plasma, with a small admixture of hot anisotropic electrons, is discussed. If the hot particles temperature anisotropy is positive, it is found that, in such plasma, longitudinal perturbations can lead to soliton formation for frequencies forbidden in cold plasma. The soliton is enriched by hot particles. The frequency region unstable to transverse modulation in cold plasma in the presence of hot electrons is divided by stable domains. For both cases the role of hot electrons is more significant for whistlers with smaller frequencies.

  15. Activation analysis of admixtures in certain semiconductive materials

    NASA Technical Reports Server (NTRS)

    Artyukhin, P. I.; Gilbert, E. P.; Pronin, V. A.

    1978-01-01

    The use of extractions and chromatographic operations to separate macrobases, and to divide elements into groups convenient for gamma-spectrometric analysis is discussed. Methods are described for the activation detection of some impurities in silicon, arsenic, thallium, and trichloromethylsilane, on the basis of the extraction properties of bis(2-chlorethyl ether) and dimethylbenzylalkylammonium chloride. A schematic diagram of the extraction separation of elements-admixture is presented showing the aqueous and organic phases. The content percentage of the various elements are given in tables.

  16. Structure of the Entrainment Zone Capping the Convective Atmospheric Boundary Layer.

    NASA Astrophysics Data System (ADS)

    Sullivan, Peter P.; Moeng, Chin-Hoh; Stevens, Bjorn; Lenschow, Donald H.; Mayor, Shane D.

    1998-10-01

    The authors use large-eddy simulation (LES) to investigate entrainment and structure of the inversion layer of a clear convectively driven planetary boundary layer (PBL) over a range of bulk Richardson numbers, Ri. The LES code uses a nested grid technique to achieve fine resolution in all three directions in the inversion layer.Extensive flow visualization is used to examine the structure of the inversion layer and to illustrate the temporal and spatial interaction of a thermal plume and the overlying inversion. It is found that coherent structures in the convective PBL, that is, thermal plumes, are primary instigators of entrainment in the Ri range 13.6 Ri 43.8. At Ri = 13.6, strong horizontal and downward velocities are generated near the inversion layer because of the plume-interface interaction. This leads to folding of the interface and hence entrainment of warm inversion air at the plume's edge. At Ri = 34.5, the inversion's strong stability prevents folding of the interface but strong horizontal and downward motions near the plume's edge pull down pockets of warm air below the nominal inversion height. These pockets of warm air are then scoured off by turbulent motions and entrained into the PBL. The structure of the inversion interface from LES is in good visual agreement with lidar measurements in the PBL obtained during the Lidars in Flat Terrain field experiment.A quadrant analysis of the buoyancy flux shows that net entrainment flux (or average minimum buoyancy flux min) is identified with quadrant IV + < 0 motions, that is, warm air moving downward. Plumes generate both large negative quadrant II + < 0 and positive quadrant III > 0 buoyancy fluxes that tend to cancel.The maximum vertical gradient in potential temperature at every (x, y) grid point is used to define a local PBL height, zi(x, y). A statistical analysis of zi shows that skewness of zi depends on the inversion strength. Spectra of zi exhibit a sensitivity to grid resolution. The

  17. Prediction of nearfield jet entrainment by an interactive mixing/afterburning model

    NASA Technical Reports Server (NTRS)

    Dash, S. M.; Pergament, H. S.; Wilmoth, R. G.

    1978-01-01

    The development of a computational model (BOAT) for calculating nearfield jet entrainment, and its application to the prediction of nozzle boattail pressures, is discussed. BOAT accounts for the detailed turbulence and thermochemical processes occurring in the nearfield shear layers of jet engine (and rocket) exhaust plumes while interfacing with the inviscid exhaust and external flowfield regions in an overlaid, interactive manner. The ability of the model to analyze simple free shear flows is assessed by detailed comparisons with fundamental laboratory data. The overlaid methodology and the entrainment correction employed to yield the effective plume boundary conditions are assessed via application of BOAT in conjunction with the codes comprising the NASA/LRC patched viscous/inviscid model for determining nozzle boattail drag for subsonic/transonic external flows. Comparisons between the predictions and data on underexpanded laboratory cold air jets are presented.

  18. Entrainment rates at the tops of laboratory analogs of cumulus and stratocumulus clouds

    NASA Astrophysics Data System (ADS)

    Górska, Anna; Malinowski, Szymon P.; Fugal, Jacob

    2015-04-01

    We investigate entrainment at tops of laboratory analogs of convective clouds: cumulus and stratocumulus. Cloudy saturated moist air (T ~22 °C) containing droplets of diameters of ~3-10 μm, is introduced into a laboratory cloud chamber of dimensions of 1.0×1.0×1.8 through an opening in the bottom wall. Initialy cloudy air fills ~60 cm thick layer at the bottom. Mixing between the cloud and unsaturated air above (T ~22 °C, RH ~35 %) results in evaporative cooling triggering convection which, in turn, leads to formation of a well mixed layer capperd with a temperature inversion. The temperature jump is about 2 °C within ~30 cm deep layer. Then updrafts are forced through a 30cm high tube extending from the bottom of the chamber. "Strong' updrafts which penetrate the whole inversion layer mimic overshooting cumulus clouds while "weak' updrafts diverging under the inversion simulate stratocumulus clouds. We use a laser sheet technique to image two-dimensional cross sections through the clouds. A specially developed mutiscale Particle Image Velicimetry (PIV) algorithm allows to retrieve 2D velocity fields. Suitable image processing allows to determine cloud-clear air interface in the images. Extracting velocities of cloudy (ui) and environmental (ua) air on both sides of the interface allows us calculate entrainment / detrainment rates: E = -ρa(ua - ui) - entrainment rate D = ρa(ua - ui) - detrainment rate. On the poster we will present fine structures of entraimnet/dertaiment process and discuss similarities and differences in both investigated types of clouds.

  19. Autosomal admixture levels are informative about sex bias in admixed populations.

    PubMed

    Goldberg, Amy; Verdu, Paul; Rosenberg, Noah A

    2014-11-01

    Sex-biased admixture has been observed in a wide variety of admixed populations. Genetic variation in sex chromosomes and functions of quantities computed from sex chromosomes and autosomes have often been examined to infer patterns of sex-biased admixture, typically using statistical approaches that do not mechanistically model the complexity of a sex-specific history of admixture. Here, expanding on a model of Verdu and Rosenberg (2011) that did not include sex specificity, we develop a model that mechanistically examines sex-specific admixture histories. Under the model, multiple source populations contribute to an admixed population, potentially with their male and female contributions varying over time. In an admixed population descended from two source groups, we derive the moments of the distribution of the autosomal admixture fraction from a specific source population as a function of sex-specific introgression parameters and time. Considering admixture processes that are constant in time, we demonstrate that surprisingly, although the mean autosomal admixture fraction from a specific source population does not reveal a sex bias in the admixture history, the variance of autosomal admixture is informative about sex bias. Specifically, the long-term variance decreases as the sex bias from a contributing source population increases. This result can be viewed as analogous to the reduction in effective population size for populations with an unequal number of breeding males and females. Our approach suggests that it may be possible to use the effect of sex-biased admixture on autosomal DNA to assist with methods for inference of the history of complex sex-biased admixture processes. PMID:25194159

  20. Rhythm as a Coordinating Device: Entrainment with Disordered Speech

    ERIC Educational Resources Information Center

    Borrie, Stephanie A.; Liss, Julie M.

    2014-01-01

    Purpose: The rhythmic entrainment (coordination) of behavior during human interaction is a powerful phenomenon, considered essential for successful communication, supporting social and emotional connection, and facilitating sense-making and information exchange. Disruption in entrainment likely occurs in conversations involving those with speech…

  1. Modeling of neutral entrainment in an FRC thruster

    SciTech Connect

    Brackbill, Jeremiah; Gimelshein, Natalia; Gimelshein, Sergey; Cambier, Jean-Luc; Ketsdever, Andrew

    2012-11-27

    Neutral entrainment in a field reversed configuration thruster is modeled numerically with an implicit PIC code extended to include thermal and chemical interactions between plasma and neutral particles. The contribution of charge exchange and electron impact ionization reactions is analyzed, and the sensitivity of the entrainment efficiency to the plasmoid translation velocity and neutral density is evaluated.

  2. Can cloud-top entrainment promote cloud growth?

    NASA Technical Reports Server (NTRS)

    Randall, D. A.

    1984-01-01

    The primary significance of Cloud Deepening through Entrainment (CDE) is that it can prevent the cloud top entrainment instability from destroying a cloud deck. Without suppressing the instability, CDE transforms it from a cloud destroyer to a cloud builder. The analysis does not depend on an entrainment hypothesis. Moreover, it is not restricted to PBL stratocumulus sheets. Stratiform clouds in the free atmosphere can be subject to CDE we need only reinterpret Ps as the pressure at the base of an elevated turbulent mixed layer. Modest departures from well mixedness will alter the results quantitatively but not qualitatively. Processes other than entrainment, such as surface evaporation, radiative cooling, and advection will often work with CDE to build a cloud layer; but of course they can also oppose CDE by reducing the relative humidity. If we make the weak assumption that the deepening of a cloud layer favors an increase in the cloud top entrainment rate (without specifying any particular functional relationship) we are led to speculate that CDE can cause runaway cloud growth, even in the absence of cloud top entrainment instability. through CDE entrainment leads to a deeper cloud, which leads to stronger entrainment.

  3. No Time To Kill: Entrainment and Accelerating Courseware Development.

    ERIC Educational Resources Information Center

    Millington, Paula Crnkovich

    This paper examines the concept of time in multimedia, World Wide Web-based courseware development. The biological concept of entrainment (the alignment of rhythms within and between systems) to accelerate courseware development is explored. The discussion begins with the foundational concepts of entrainment from biological systems and social…

  4. The Impact of Rhythmic Entrainment on a Person with Autism.

    ERIC Educational Resources Information Center

    Orr, Tracy Jo; Myles, Brenda Smith; Carlson, Judith K.

    1998-01-01

    A study investigated the impact of rhythmic entrainment on an 11-year-old girl with autism who engaged in head jerking and screaming. Rhythmic entrainment intervention was more effective when she exhibited behavior that resulted from a moderate level of stress and less effective when stressors were more severe. (CR)

  5. Volcanic jets, plumes, and collapsing fountains: evidence from large-scale experiments, with particular emphasis on the entrainment rate

    NASA Astrophysics Data System (ADS)

    Dellino, P.; Dioguardi, F.; Mele, D.; D'Addabbo, M.; Zimanowski, B.; Büttner, R.; Doronzo, D. M.; Sonder, I.; Sulpizio, R.; Dürig, T.; La Volpe, L.

    2014-06-01

    The source conditions of volcanic plumes and collapsing fountains are investigated by means of large-scale experiments. In the experiments, gas-particle jets issuing from a cylindrical conduit are forced into the atmosphere at different mass flow rates. Dense jets (high particle volumetric concentration, e.g., C 0 > 0.01) generate collapsing fountains, whose height scales with the squared exit velocity. This is consistent with Bernoulli's equation, which is a good approximation if air entrainment is negligible. In this case, kinetic energy is transformed into potential energy without any significant loss by friction with the atmosphere. The dense collapsing fountain, on hitting the ground, generates an intense shear flow similar to a pyroclastic density current. Dilute hot jets (low particle volumetric concentration, e.g., C 0 < 0.01) dissipate their initial kinetic energy at much smaller heights than those predicted by Bernoulli's equation. This is an indication that part of the total mechanical energy is lost by friction with the atmosphere. Significant air entrainment results in this case, leading to the formation of a buoyant column (plume) from which particles settle similarly to pyroclastic fallout. The direct measurement of entrainment coefficient in the experiments suggests that dense collapsing fountains form only when air entrainment is not significant. This is a consequence of the large density difference between the jet and the atmosphere. Cold dilute experiments result in an entrainment coefficient of about 0.06, which is typical of pure jets of fluid dynamics. Hot dilute experiments result in an entrainment coefficient of about 0.11, which is typical of thermally buoyant plumes. The entrainment coefficients obtained by experiments were used as input data in numerical simulations of fountains and plumes. A numerical model was used to solve the classic top-hat system of governing equations, which averages the field variables (e.g., column velocity and

  6. Fluvial entrainment of low density peat blocks (block carbon)

    NASA Astrophysics Data System (ADS)

    Warburton, Jeff

    2014-05-01

    In many fluvial environments low density materials are transported in significant quantities and these form an important part of the stream load and /or have a distinct impact on sedimentation in these environments. However, there are significant gaps in understanding of how these materials are entrained and transported by streams and rivers. Eroding upland peatland environments in particular, frequently have fluvial systems in which large eroded peat blocks, often exceeding 1 m in length; form an important component of the stream material flux. Transport of this material is significant in determining rates of erosion but also has important impacts in terms of damage to infrastructure and carbon loss. This paper describes a field experiment designed to establish for the first time the conditions under which large peat blocks (c. > 0.1 m b axis) are initially entrained from a rough gravel bed. The field site is Trout Beck, in the North Pennines, Northern England which is an upland wandering river channel with occasional lateral and mid channel bars. Mean low flow stage is typically 0.2 m but during flood can rapidly rise, in one to two hours, to over 1.5 m. To study peat block entrainment a bespoke data acquisition system consisting of two pressure transducers, four release triggers and time lapse camera was set up. The pressure transducers provided a record of local depth and the release triggers were embedded in peat blocks to record initial motion and arranged on the rough stream bed. The time lapse camera provided verification of timing of block entrainment (during daylight hours) and also provided information on the mechanism of initial movement. Peat blocks were cut from a local source and were equidimensional, ranging in size from 0.1 to 0.7 m. The derived entrainment function is related to a critical depth of entrainment. Results demonstrate that peat blocks are entrained when the local depth approximates the height of the peat block. Blocks frequently shift

  7. Physicochemical compatibility of nebulizable drug admixtures containing colistimethate and tobramycin.

    PubMed

    Wollstadt, A; Krämer, I; Kamin, W

    2013-09-01

    Inhalation therapy with nebulizable antibiotic drugs is a mainstay in treating Pseudomonas aeruginosa infections in cystic fibrosis patients. The combination of tobramycin and colistin was found to be superior to monotherapy in killing P. aeruginosa in biofilms. The simultaneous inhalation of tobramycin and colistin might be an option to increase the compliance of patients. The objective of this in-vitro study was to determine whether admixtures of inhalation solutions containing colistin methanesulfonate (CMS) and tobramycin are physicochemically compatible. Physical compatibility was determined by measuring pH and osmolality. Chemical compatibility was determined by testing the antibiotic activity of the mixtures by the pharmacopoeial microbiological assay and comparing the results to those of standard solutions. Samples were analyzed immediately after mixing and after 24 h. Values of pH and osmolality remained unchanged and in physiologically acceptable ranges. Neither for colistin methanesulfonate (CMS) nor for tobramycin losses of antibiotic potency were registered at any time. Admixtures of nebulizer solutions containing CMS and tobramycin were shown to be physicochemically compatible. Further investigations are needed to determine whether drug delivery is affected by mixing the nebulizer solutions to ensure that simultaneous inhalation is recommendable. PMID:24147342

  8. Scalar entrainment in the mixing layer

    NASA Technical Reports Server (NTRS)

    Sandham, N. D.; Mungal, M. G.; Broadwell, J. E.; Reynolds, W. C.

    1988-01-01

    New definitions of entrainment and mixing based on the passive scalar field in the plane mixing layer are proposed. The definitions distinguish clearly between three fluid states: (1) unmixed fluid, (2) fluid engulfed in the mixing layer, trapped between two scalar contours, and (3) mixed fluid. The difference betwen (2) and (3) is the amount of fluid which has been engulfed during the pairing process, but has not yet mixed. Trends are identified from direct numerical simulations and extensions to high Reynolds number mixing layers are made in terms of the Broadwell-Breidenthal mixing model. In the limit of high Peclet number (Pe = ReSc) it is speculated that engulfed fluid rises in steps associated with pairings, introducing unmixed fluid into the large scale structures, where it is eventually mixed at the Kolmogorov scale. From this viewpoint, pairing is a prerequisite for mixing in the turbulent plane mixing layer.

  9. Ground-Based Remote Retrievals of Cumulus Entrainment Rates

    SciTech Connect

    Wagner, Timothy J.; Turner, David D.; Berg, Larry K.; Krueger, Steven K.

    2013-07-26

    While fractional entrainment rates for cumulus clouds have typically been derived from airborne observations, this limits the size and scope of available data sets. To increase the number of continental cumulus entrainment rate observations available for study, an algorithm for retrieving them from ground-based remote sensing observations has been developed. This algorithm, called the Entrainment Rate In Cumulus Algorithm (ERICA), uses the suite of instruments at the Southern Great Plains (SGP) site of the United States Department of Energy's Atmospheric Radiation Measurement (ARM) Climate Research Facility as inputs into a Gauss-Newton optimal estimation scheme, in which an assumed guess of the entrainment rate is iteratively adjusted through intercomparison of modeled liquid water path and cloud droplet effective radius to their observed counterparts. The forward model in this algorithm is the Explicit Mixing Parcel Model (EMPM), a cloud parcel model that treats entrainment as a series of discrete entrainment events. A quantified value for measurement uncertainty is also returned as part of the retrieval. Sensitivity testing and information content analysis demonstrate the robust nature of this method for retrieving accurate observations of the entrainment rate without the drawbacks of airborne sampling. Results from a test of ERICA on three months of shallow cumulus cloud events show significant variability of the entrainment rate of clouds in a single day and from one day to the next. The mean value of 1.06 km-¹ for the entrainment rate in this dataset corresponds well with prior observations and simulations of the entrainment rate in cumulus clouds.

  10. How important is intraspecific genetic admixture to the success of colonising populations?

    EPA Science Inventory

    Genetic admixture of divergent lineages is increasingly suspected to play an important role in the success of colonizing populations. This has become a particularly prominent theme in the literature on biological invasions, where admixture is now commonly proposed as an important...

  11. Effects of Different Mineral Admixtures on the Properties of Fresh Concrete

    PubMed Central

    Nuruddin, Muhammad Fadhil; Shafiq, Nasir

    2014-01-01

    This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer. PMID:24701196

  12. Effects of different mineral admixtures on the properties of fresh concrete.

    PubMed

    Khan, Sadaqat Ullah; Nuruddin, Muhammad Fadhil; Ayub, Tehmina; Shafiq, Nasir

    2014-01-01

    This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer. PMID:24701196

  13. Percentage entrainment of constituent loads in urban runoff, south Florida

    USGS Publications Warehouse

    Miller, R.A.

    1985-01-01

    Runoff quantity and quality data from four urban basins in south Florida were analyzed to determine the entrainment of total nitrogen, total phosphorus, total carbon, chemical oxygen demand, suspended solids, and total lead within the stormwater runoff. Land use of the homogeneously developed basins are residential (single family), highway, commercial, and apartment (multifamily). A computational procedure was used to calculate, for all storms that had water-quality data, the percentage of constituent load entrainment in specified depths of runoff. The plot of percentage of constituent load entrained as a function of runoff is termed the percentage-entrainment curve. Percentage-entrainment curves were developed for three different source areas of basin runoff: (1) the hydraulically effective impervious area, (2) the contributing area, and (3) the drainage area. With basin runoff expressed in inches over the contributing area, the depth of runoff required to remove 90 percent of the constituent load ranged from about 0.4 inch to about 1.4 inches; and to remove 80 percent, from about 0.3 to 0.9 inch. Analysis of variance, using depth of runoff from the contributing area as the response variable, showed that the factor 'basin' is statistically significant, but that the factor 'constituent' is not statistically significant in the forming of the percentage-entrainment curve. Evidently the sewerage design, whether elongated or concise in plan dictates the shape of the percentage-entrainment curve. The percentage-entrainment curves for all constituents were averaged for each basin and plotted against basin runoff for three source areas of runoff-the hydraulically effective impervious area, the contributing area, and the drainage area. The relative positions of the three curves are directly related to the relative sizes of the three source areas considered. One general percentage-entrainment curve based on runoff from the contributing area was formed by averaging across

  14. Characteristics of rice husk gasification in an entrained flow reactor.

    PubMed

    Zhao, Yijun; Sun, Shaozeng; Tian, Hongming; Qian, Juan; Su, Fengming; Ling, Feng

    2009-12-01

    Experiments were performed in an entrained flow reactor to better understand the characteristics of biomass gasification. Rice husk was used in this study. Effects of the gasification temperature (700, 800, 900 and 1000 degrees C) and the equivalence ratio in the range of 0.22-0.34 on the biomass gasification and the axial gas distribution in the reactor were studied. The results showed that reactions of CnHm were less important in the gasification process except cracking reactions which occurred at higher temperature. In the oxidization zone, reactions between char and oxygen had a more prevailing role. The optimal gasification temperature of the rice husk could be above 900 degrees C, and the optimal value of ER was 0.25. The gasification process was finished in 1.42 s when the gasification temperature was above 800 degrees C. A first order kinetic model was developed for describing rice husk air gasification characteristics and the relevant kinetic parameters were determined. PMID:19589673

  15. Tropical deep convection, entrainment, and dilution during the dynamo field campaign

    NASA Astrophysics Data System (ADS)

    Hannah, Walter

    more humid environment is better explained by a reduction of buoyancy dilution. An additional sensitivity experiment shows that entrainment and dilution are enhanced when convection is organized by the presence of vertical wind shear. The enhanced dilution is associated with entrainment of drier air on average. (Abstract shortened by UMI.).

  16. A Balanced Diet Is Necessary for Proper Entrainment Signals of the Mouse Liver Clock

    PubMed Central

    Hirao, Akiko; Tahara, Yu; Kimura, Ichiro; Shibata, Shigenobu

    2009-01-01

    Background The peripheral circadian clock in mice is entrained not only by light-dark cycles but also by daily restricted feeding schedules. Behavioral and cell culture experiments suggest an increase in glucose level as a factor in such feeding-induced entrainment. For application of feeding-induced entrainment in humans, nutrient content and dietary variations should be considered. Principal Finding To elucidate the food composition necessary for dietary entrainment, we examined whether complete or partial substitution of dietary nutrients affected phase shifts in liver clocks of mice. Compared with fasting mice or ad libitum fed mice, the liver bioluminescence rhythm advanced by 3–4 h on the middle day in Per2::luciferase knock-in mice that were administered a standard mouse diet, i.e. AIN-93M formula [0.6–0.85 g/10 g mouse BW] (composition: 14% casein, 47% cornstarch, 15% gelatinized cornstarch, 10% sugar, 4% soybean oil, and 10% other [fiber, vitamins, minerals, etc.]), for 2 days. When each nutrient was tested alone (100% nutrient), an insignificant weak phase advance was found to be induced by cornstarch and soybean oil, but almost no phase advance was induced by gelatinized cornstarch, high-amylose cornstarch, glucose, sucrose, or casein. A combination of glucose and casein without oil, vitamin, or fiber caused a significant phase advance. When cornstarch in AIN-93M was substituted with glucose, sucrose, fructose, polydextrose, high-amylose cornstarch, or gelatinized cornstarch, the amplitude of phase advance paralleled the increase in blood glucose concentration. Conclusions Our results strongly suggest the following: (1) balanced diets containing carbohydrates/sugars and proteins are good for restricted feeding-induced entrainment of the peripheral circadian clock and (2) a balanced diet that increases blood glucose, but not by sugar alone, is suitable for entrainment. These findings may assist in the development of dietary recommendations for on

  17. Cortical entrainment to music and its modulation by expertise

    PubMed Central

    Doelling, Keith B.; Poeppel, David

    2015-01-01

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta–theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15–30 Hz)—often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition. PMID:26504238

  18. Laboratory Experiments on Convective Entrainment Using a Saline Water Tank

    NASA Astrophysics Data System (ADS)

    Jonker, Harmen J. J.; Jiménez, Maria A.

    2014-06-01

    Entrainment fluxes in a shear-free convective boundary layer have been measured with a saline water tank set-up. The experiments were targeted towards measuring the entrainment behaviour for medium to high Richardson numbers and use a two-layer design, i.e. two stacked non-stratified (neutral) layers with different densities. With laser induced fluorescence (LIF), the entrainment flux of a fluorescent dye is measured for bulk Richardson numbers in the range 30-260. It is proposed that a carefully chosen combination of top-down and bottom-up processes improves the accuracy of LIF-based entrainment observations. The observed entrainment fluxes are about an order of magnitude lower than reported for thermal water tanks: the derived buoyancy entrainment ratio, , is found to be , which is to be compared with for a thermal convection tank (Deardorff et al., J Fluid Mech 100:41-64, 1980). An extensive discussion is devoted to the influence of the Reynolds and Prandtl numbers in laboratory experiments on entrainment.

  19. Cortical entrainment to music and its modulation by expertise.

    PubMed

    Doelling, Keith B; Poeppel, David

    2015-11-10

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta-theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15-30 Hz)-often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition. PMID:26504238

  20. Numerical Investigation of Entrainment of Turbulent Dense Currents

    NASA Astrophysics Data System (ADS)

    Bhaganaagar, Kiran; Nayamatulla, Manjure

    2016-04-01

    Entrainment in dense overflows has fundamental importance for understanding the transport of densest water in the ocean. Estimation of entrainment is extremely challenging and to-date we do not have a fundamental framework that parameterizes entrainment. A highly accurate direct numerical simulation and large eddy simulation solvers have been developed to simulate dense currents over range of smooth- and rough-surfaces. Simulations have been performed for both lock-exchange currents and constant flux currents. A mathematical framework has been developed to estimate entrainment of 2-D and 3-D dense currents. Entrainment has been calculated from first-principles as the relative change in the volume of the dense current in time with respect to the buoyancy forcing that drives the dense current. A combination of threshold method, wherein the height of current is evaluated as height corresponding to the specified threshold value and sorting method, wherein, the mixed fluid is sorted into bins ranging from dense fluid at the bottom to ambient fluid at the top has been used to evaluate the interface between the dense and ambient fluid. Entrainment is sensitive to the method of evaluation of the interface height. Finally, we obtained the dependency of entrainment parameter on non-dimensional parameters. Analysis has demonstrated lock-exchange currents have less mixing and entrainment for same Reynolds number and Froude's number than constant flux currents. The differences exist due to differences in nature of Kelvin-Helmholtz instabilities and lobe-cleft currents. Rough-bottom surfaces introduces additional dynamics of the dense currents. The spacing between the roughness elements has demonstrated to be important metric in entrainment parameters for lock-exchange currents. Densely spaced (D-type) currents travel slower as roughness causes hindrance on density current propagation due to enhanced drag and produces additional eddies and instabilities compared to sparsely

  1. Direct numerical simulation of sediment entrainment in turbulent channel flow

    NASA Astrophysics Data System (ADS)

    Ji, C.; Munjiza, A.; Avital, E.; Ma, J.; Williams, J. J. R.

    2013-05-01

    In this paper, the entrainment and movement of coarse particles on the bed of an open channel is numerically investigated. Rather than model the sediment transport using a concentration concept, this study treats the sediment as individual particles and investigates the interaction between turbulent coherent structures and particle entrainment. The applied methodology is a combination of the direct numerical simulation of turbulent flow, the combined finite-discrete element modeling of particle motion and collision, and the immersed boundary method for the fluid-solid interaction. In this study, flow over a water-worked rough-bed consisting of 2-3 layers of densely packed spheres is adopted and the Shields function is 0.065 which is just above the entrainment threshold to give a bed-load regime. Numerical results for turbulent flow, sediment entrainment statistics, hydrodynamic forces acting on the particles, and the interaction between turbulence coherent structures and particle entrainment are presented. It is shown that the presence of entrained particles significantly modifies the mean velocity and turbulence quantity profiles in the vicinity of a rough-bed and that the instantaneous lift force can be larger than a particle's submerged weight in a narrow region above the effective bed location, although the mean lift force is always smaller than the submerged weight. This, from a hydrodynamic point of view, presents strong evidence for a close cause-and-effect relationship between coherent structures and sediment entrainment. Furthermore, instantaneous numerical results on particle entrainment and the surrounding turbulent flow are reported which show a strong correlation between sediment entrainment and sweep events and the underlying mechanisms are discussed.

  2. Preserving immune diversity through ancient inheritance and admixture.

    PubMed

    Ségurel, Laure; Quintana-Murci, Lluis

    2014-10-01

    The progress of genomic technologies is allowing researchers to scan the genomes of different species for the occurrence of natural selection at an unprecedented level of resolution. These studies show that genes involved in immune processes are preferential targets of different forms of selection, some of which act to preserve immune diversity over time. Recent work in humans shows that this can be achieved either by inheriting advantageous immune variation from distant ancestral species, through long-term balancing selection, or by acquiring novel selected alleles through admixture with extinct hominins such as Neanderthals or Denisovans. These studies collectively increase our knowledge of immune genes for which maintaining the functional diversity has conferred a strong selective advantage for host survival. PMID:25190608

  3. Interethnic variability and admixture in Latin America--social implications.

    PubMed

    Salzano, Francisco M

    2004-09-01

    Past and present attempts to classify and characterize the human biological variability are examined, considering the race concept, ethnic identification problems, assortative mating based on ethnicity, and historical genetics. In relation to the latter, a review is made of the methods presently available for admixture quantification and of previous studies aimed at the characterization of the parental continental contributions to Latin American populations, with emphasis in global evaluations of the Costa Rican and Brazilian gene pools. Finally, the question of racism and discrimination is considered, including the relation between human rights and affirmative actions. The right to equal opportunity should be strictly respected. Biological inequality has nothing to do with the ethical principle that someone's position in a given society should be an accurate reflection of her/his individual ability. PMID:17361535

  4. Pharmacogenomic implications of population admixture: Brazil as a model case.

    PubMed

    Suarez-Kurtz, Guilherme; Paula, Daniela Polessa; Struchiner, Claudio J

    2014-02-01

    The heterogeneous Brazilian population, with European, African and Amerindian ancestral roots is a model case for exploring the impact of population admixture on the frequency distribution of polymorphisms in pharmacogenes, and the design and interpretation of pharmacogenomics trials. Examples drawn from studies carried out by researchers of the Brazilian pharmacogenomics network, support the following conclusions: the distribution of polymorphisms varies across geographical regions and self-reported 'race/color' categories, and is best modeled as continuous functions of individual proportions of European and African ancestry; the differential frequency of polymorphisms impacts the calculations of sample sizes required for adequate statistical power in clinical trials performed in different segments of the Brazilian population; and extrapolation of pharmacogenomics data from well-defined ethnic groups to Brazilians is plagued with uncertainty. Data for warfarin and tacrolimus are reviewed to highlight the advantages and challenges of performing pharmacogenomic trials in Brazilians. PMID:24444410

  5. Used cooking oil as a green chemical admixture in concrete

    NASA Astrophysics Data System (ADS)

    Salmia, B.; Che Muda, Zakaria; Ashraful Alam, Md; Sidek, L. M.; Hidayah, B.

    2013-06-01

    According to National Statistics Approximately 1.35 billion gallons of used oil are generated yearly. With the increasing of the concrete usage, a more cost effective and economic new type of admixtures may give positive impacts on the Malaysian construction building as well as worldwide concrete usage. To objective of this is study is to investigate the effect of used cooking oil in terms of slump test, compressive strength test and rebound hammer. By adding the used cooking oil to the concrete, it increases the slump value from 4% to 72%. And the compressive strength have an increment from 1% to 16.8%. The used cooking oil obtains the optimum contribution to the concrete mix proportion of containing used cooking oil of 1.50% from the cement content. The result of used cooking oil from experimental program of slump value and compressive strength proved that used cooking oil have positive effects on replacement of commercially available superplasticizer.

  6. On the maximum grain size entrained by photoevaporative winds

    NASA Astrophysics Data System (ADS)

    Hutchison, Mark A.; Laibe, Guillaume; Maddison, Sarah T.

    2016-09-01

    We model the behaviour of dust grains entrained by photoevaporation-driven winds from protoplanetary discs assuming a non-rotating, plane-parallel disc. We obtain an analytic expression for the maximum entrainable grain size in extreme-UV radiation-driven winds, which we demonstrate to be proportional to the mass loss rate of the disc. When compared with our hydrodynamic simulations, the model reproduces almost all of the wind properties for the gas and dust. In typical turbulent discs, the entrained grain sizes in the wind are smaller than the theoretical maximum everywhere but the inner disc due to dust settling.

  7. Organic Entrainment and Preservation in Volcanic Glasses

    NASA Technical Reports Server (NTRS)

    Wilhelm, Mary Beth; Ojha, Lujendra; Brunner, Anna E.; Dufek, Josef D.; Wray, James Joseph

    2014-01-01

    Unaltered pyroclastic deposits have previously been deemed to have "low" potential for the formation, concentration and preservation of organic material on the Martian surface. Yet volcanic glasses that have solidified very quickly after an eruption may be good candidates for containment and preservation of refractory organic material that existed in a biologic system pre-eruption due to their impermeability and ability to attenuate UV radiation. Analysis using NanoSIMS of volcanic glass could then be performed to both deduce carbon isotope ratios that indicate biologic origin and confirm entrainment during eruption. Terrestrial contamination is one of the biggest barriers to definitive Martian organic identification in soil and rock samples. While there is a greater potential to concentrate organics in sedimentary strata, volcanic glasses may better encapsulate and preserve organics over long time scales, and are widespread on Mars. If volcanic glass from many sites on Earth could be shown to contain biologically derived organics from the original environment, there could be significant implications for the search for biomarkers in ancient Martian environments.

  8. The Huygens entrainment phenomenon and thermoacoustic engines

    PubMed

    Spoor; Swift

    2000-08-01

    The earliest known reference to the mode-locking, or entrainment, of two maintained oscillators is Christiaan Huygens' description of two pendulum clocks "falling into synchrony" when hung on the same wall. We describe an analogous phenomenon in acoustics-the mode-locking of two thermoacoustic engines which have their cases rigidly welded together, but which are otherwise uncoupled. This "mass-coupling" might compete with acoustic coupling when the latter is used to enforce antiphase mode-locking in such engines, for vibration cancellation. A simple theory relating the phase difference between the engines in the locked state to the corresponding ratio of their pressure amplitudes is in excellent agreement with theory and numerical simulations. The theory's prediction relating the phase difference to the engines' natural frequency difference is qualitatively confirmed by experiment, despite larger experimental uncertainties. The mass coupling is relatively weak compared to the aforementioned acoustic coupling, and in general occurs in antiphase, so we conclude that mass coupling will not interfere with vibration cancellation by acoustic coupling in most circumstances. PMID:10955624

  9. Speech entrainment compensates for Broca's area damage.

    PubMed

    Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

    2015-08-01

    Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to SE. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during SE versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of SE to improve speech production and may help select patients for SE treatment. PMID:25989443

  10. Music and emotions: from enchantment to entrainment.

    PubMed

    Vuilleumier, Patrik; Trost, Wiebke

    2015-03-01

    Producing and perceiving music engage a wide range of sensorimotor, cognitive, and emotional processes. Emotions are a central feature of the enjoyment of music, with a large variety of affective states consistently reported by people while listening to music. However, besides joy or sadness, music often elicits feelings of wonder, nostalgia, or tenderness, which do not correspond to emotion categories typically studied in neuroscience and whose neural substrates remain largely unknown. Here we review the similarities and differences in the neural substrates underlying these "complex" music-evoked emotions relative to other more "basic" emotional experiences. We suggest that these emotions emerge through a combination of activation in emotional and motivational brain systems (e.g., including reward pathways) that confer its valence to music, with activation in several other areas outside emotional systems, including motor, attention, or memory-related regions. We then discuss the neural substrates underlying the entrainment of cognitive and motor processes by music and their relation to affective experience. These effects have important implications for the potential therapeutic use of music in neurological or psychiatric diseases, particularly those associated with motor, attention, or affective disturbances. PMID:25773637

  11. Granular motions near the threshold of entrainment

    NASA Astrophysics Data System (ADS)

    Valyrakis, Manousos; Alexakis, athanasios-Theodosios

    2016-04-01

    Our society is continuously impacted by significant weather events many times resulting in catastrophes that interrupt our normal way of life. In the context of climate change and increasing urbanisation these "extreme" hydrologic events are intensified both in magnitude and frequency, inducing costs of the order of billions of pounds. The vast majority of such costs and impacts (even more to developed societies) are due to water related catastrophes such as the geomorphic action of flowing water (including scouring of critical infrastructure, bed and bank destabilisation) and flooding. New tools and radically novel concepts are in need, to enable our society becoming more resilient. This presentation, emphasises the utility of inertial sensors in gaining new insights on the interaction of flow hydrodynamics with the granular surface at the particle scale and for near threshold flow conditions. In particular, new designs of the "smart-sphere" device are discussed with focus on the purpose specific sets of flume experiments, designed to identify the exact response of the particle resting at the bed surface for various below, near and above threshold flow conditions. New sets of measurements are presented for particle entrainment from a Lagrangian viewpoint. Further to finding direct application in addressing real world challenges in the water sector, it is shown that such novel sensor systems can also help the research community (both experimentalists and computational modellers) gain a better insight on the underlying processes governing granular dynamics.

  12. A comparative efficacy study of photic driving brainwave entrainment technology with a novel form of more direct entrainment

    NASA Astrophysics Data System (ADS)

    Knowles, Richard Thomas

    This exploratory study compared the efficacy of a novel brainwave electromagnetic (EM) entrainment technology against a more conventional technology utilizing the photic-driving technique. Both experimental conditions were also compared with a 7-minute control session that took place immediately before each stimulation session. The Schumann Resonance (SR) frequency was selected as the delivery signal and was chosen because of previous findings suggesting that entrainment to this frequency can often produce transpersonal if not paranormal, experiences in the entrainee, which sometimes resemble remote viewing or out-of-body experiences. A pilot study determined which of two novel entrainment modalities (a copper coil or a 16-solenoid headset) worked most effectively for use with the rest of the study. In the main study, an artificial SR signal at 7.8Hz was delivered during the photic-driving sessions, but a recording of the real-time SR was used to deliver the entrainment signal during sessions devoted to the electromagnetic entrainment modality. Sixteen participants were recruited from the local area, and EEG recordings were acquired via a 32-channel Deymed electroencephalography system. Comparative analyses were performed between the control and experimental portions of each session to assess for efficacy of the novel entrainment modality used, and, in the main study, between the electromagnetic and photic-driving sessions, to assess for differential entrainment efficacy between these groups. A follow-up study was additionally performed primarily to determine whether responders could replicate their entrainment effect from the main study. Results showed that EM entrainment appeared to be possible but is not nearly as robust or reliable as photic driving. Additionally, no profound transpersonal or paranormal experiences were elicited during the course of the study, and, when asked, participants were not able to determine with any degree of success, when the

  13. The Complex Admixture History and Recent Southern Origins of Siberian Populations.

    PubMed

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-07-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere. PMID:26993256

  14. The Complex Admixture History and Recent Southern Origins of Siberian Populations

    PubMed Central

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-01-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere. PMID:26993256

  15. A factorial design study on the physical stability of 3-in-1 admixtures.

    PubMed

    Li, L C; Sampogna, T P

    1993-11-01

    The effects of dextrose concentration, the compounding method, and storage conditions, on the physical stability of 3-in-1 admixtures were investigated using a 2n factorial design. The main effect of these three variables on the weight percent of oil globules larger than 5 microns (by HIAC) was found to be statistically significant. However, the effects of interaction amongst these variables, except the two-way interaction between dextrose concentration and storage conditions, were found to be statistically insignificant. A higher dextrose concentration was shown to enhance the physical stability of the admixtures, while low-temperature storage (three days at 5 degrees C) was more favourable for maintaining the physical stability of the admixtures with a low dextrose concentration. Although sequential pumping produced admixtures with a slightly lower final weight percentage of larger oil globules (> 5 microns), the method of compounding has the least impact on the physical stability of the admixtures in comparison with the other two variables evaluated in this study. The storage of the admixtures at room temperature for one day was shown to have a greater adverse effect on admixtures with a low dextrose concentration. PMID:7908042

  16. Estimating rates of debris flow entrainment from ground vibrations

    NASA Astrophysics Data System (ADS)

    Kean, J. W.; Coe, J. A.; Coviello, V.; Smith, J. B.; McCoy, S. W.; Arattano, M.

    2015-08-01

    Debris flows generate seismic waves as they travel downslope and can become more dangerous as they entrain sediment along their path. We present field observations that show a systematic relation between the magnitude of seismic waves and the amount of erodible sediment beneath the flow. Specifically, we observe that a debris flow traveling along a channel filled initially with sediment 0.34 m thick generates about 2 orders of magnitude less spectral power than a similar-sized flow over the same channel without sediment fill. We adapt a model from fluvial seismology to explain this observation and then invert it to estimate the level of bed sediment (and rate of entrainment) beneath a passing series of surges. Our estimates compare favorably with previous direct measurements of entrainment rates at the site, suggesting the approach may be a new indirect way to obtain rare field constraints needed to test models of debris flow entrainment.

  17. Entrainment of a Synthetic Oscillator through Queueing Coupling

    NASA Astrophysics Data System (ADS)

    Hochendoner, Philip; Mather, William; Butzin, Nicholas; Ogle, Curtis

    2014-03-01

    Many biological systems naturally exhibit (often noisy) oscillatory patterns that are capable of being entrained by external stimuli, though the mechanism of entrainment is typically obscured by the complexity of native networks. A synthetic biology approach, where genetic programs are wired ``by hand,'' has proven useful in this regard. In the present study, we use a synthetic oscillator in Escherichia coli to demonstrate a novel and potentially widespread mechanism for biological entrainment: competition of proteins for degradation by common pathway, i.e. a entrainment by a bottleneck. To faithfully represent the discrete and stochastic nature of this bottleneck, we leverage results from a recent biological queueing theory, where in particular, the queueing theoretic concept of workload is discovered to simplify the analysis. NSF Award 1330180.

  18. How coupling determines the entrainment of circadian clocks

    NASA Astrophysics Data System (ADS)

    Bordyugov, G.; Granada, A. E.; Herzel, H.

    2011-08-01

    Autonomous circadian clocks drive daily rhythms in physiology and behaviour. A network of coupled neurons, the suprachiasmatic nucleus (SCN), serves as a robust self-sustained circadian pacemaker. Synchronization of this timer to the environmental light-dark cycle is crucial for an organism's fitness. In a recent theoretical and experimental study it was shown that coupling governs the entrainment range of circadian clocks. We apply the theory of coupled oscillators to analyse how diffusive and mean-field coupling affects the entrainment range of interacting cells. Mean-field coupling leads to amplitude expansion of weak oscillators and, as a result, reduces the entrainment range. We also show that coupling determines the rigidity of the synchronized SCN network, i.e. the relaxation rates upon perturbation. Our simulations and analytical calculations using generic oscillator models help to elucidate how coupling determines the entrainment of the SCN. Our theoretical framework helps to interpret experimental data.

  19. Population admixture may appear to mask, change or reverse genetic effects of genes underlying complex traits.

    PubMed Central

    Deng, H W

    2001-01-01

    Association studies using random population samples are increasingly being applied in the identification and inference of genetic effects of genes underlying complex traits. It is well recognized that population admixture may yield false-positive identification of genetic effects for complex traits. However, it is less well appreciated that population admixture can appear to mask, change, or reverse true genetic effects for genes underlying complex traits. By employing a simple population genetics model, we explore the effects and the conditions of population admixture in masking, changing, or even reversing true genetic effects of genes underlying complex traits. PMID:11729172

  20. Entrainment Ranges for Chains of Forced Neural and Phase Oscillators.

    PubMed

    Massarelli, Nicole; Clapp, Geoffrey; Hoffman, Kathleen; Kiemel, Tim

    2016-12-01

    Sensory input to the lamprey central pattern generator (CPG) for locomotion is known to have a significant role in modulating lamprey swimming. Lamprey CPGs are known to have the ability to entrain to a bending stimulus, that is, in the presence of a rhythmic signal, the CPG will change its frequency to match the stimulus frequency. Bending experiments in which the lamprey spinal cord has been removed and mechanically bent back and forth at a single point have been used to determine the range of frequencies that can entrain the CPG rhythm. First, we model the lamprey locomotor CPG as a chain of neural oscillators with three classes of neurons and sinusoidal forcing representing edge cell input. We derive a phase model using the connections described in the neural model. This results in a simpler model yet maintains some properties of the neural model. For both the neural model and the derived phase model, entrainment ranges are computed for forcing at different points along the chain while varying both intersegmental coupling strength and the coupling strength between the forcer and chain. Entrainment ranges for chains with nonuniform intersegmental coupling asymmetry are larger when forcing is applied to the middle of the chain than when it is applied to either end, a result that is qualitatively similar to the experimental results. In the limit of weak coupling in the chain, the entrainment results of the neural model approach the entrainment results for the derived phase model. Both biological experiments and the robustness of non-monotonic entrainment ranges as a function of the forcing position across different classes of CPG models with nonuniform asymmetric coupling suggest that a specific property of the intersegmental coupling of the CPG is key to entrainment. PMID:27091694

  1. A parameterization of the depth of the entrainment zone

    NASA Technical Reports Server (NTRS)

    Boers, Reinout

    1989-01-01

    A theory of the parameterization of the entrainment zone depth has been developed based on conservation of energy. This theory suggests that the normalized entrainment zone depth is proportional to the inverse square root of the Richardson number. A comparison of this theory with atmospheric observations indicates excellent agreement. It does not adequately predict the laboratory data, although it improves on parcel theory, which is based on a momentum balance.

  2. Differential Entrainment of Neuroelectric Delta Oscillations in Developmental Dyslexia

    PubMed Central

    Soltész, Fruzsina; Szűcs, Denes; Leong, Victoria; White, Sonia; Goswami, Usha

    2013-01-01

    Oscillatory entrainment to the speech signal is important for language processing, but has not yet been studied in developmental disorders of language. Developmental dyslexia, a difficulty in acquiring efficient reading skills linked to difficulties with phonology (the sound structure of language), has been associated with behavioural entrainment deficits. It has been proposed that the phonological ‘deficit’ that characterises dyslexia across languages is related to impaired auditory entrainment to speech at lower frequencies via neuroelectric oscillations (<10 Hz, ‘temporal sampling theory’). Impaired entrainment to temporal modulations at lower frequencies would affect the recovery of the prosodic and syllabic structure of speech. Here we investigated event-related oscillatory EEG activity and contingent negative variation (CNV) to auditory rhythmic tone streams delivered at frequencies within the delta band (2 Hz, 1.5 Hz), relevant to sampling stressed syllables in speech. Given prior behavioural entrainment findings at these rates, we predicted functionally atypical entrainment of delta oscillations in dyslexia. Participants performed a rhythmic expectancy task, detecting occasional white noise targets interspersed with tones occurring regularly at rates of 2 Hz or 1.5 Hz. Both groups showed significant entrainment of delta oscillations to the rhythmic stimulus stream, however the strength of inter-trial delta phase coherence (ITC, ‘phase locking’) and the CNV were both significantly weaker in dyslexics, suggestive of weaker entrainment and less preparatory brain activity. Both ITC strength and CNV amplitude were significantly related to individual differences in language processing and reading. Additionally, the instantaneous phase of prestimulus delta oscillation predicted behavioural responding (response time) for control participants only. PMID:24204644

  3. Entrainment and detrainment in a simple cumulus cloud model

    NASA Technical Reports Server (NTRS)

    Randall, D. A.; Huffman, G. J.

    1982-01-01

    A cumulus cloud model, analogous to the mixed-layer models of the planetary boundary layer and the upper ocean, is developed using a single, unitary entrainment process in which the motion of the cloud boundary relative to the mean flow is permitted, produced, and controlled by turbulent processes. An alternate theory to the mixing-length theory of Asai and Kasahara (1967) is proposed which completely removes the strong scale-dependence of the Asai-Kasahara model. The model reintroduces scale-dependence by introducing including the pe5turbation pressure term of the equation of vertical motion. It is shown that the model predicts deeper clouds than the Asai-Kasahara model for a given sounding, due to the entrainment assumption and the effects of the perturbation pressure. Lateral entrainment dominates cloud-top entrainment, although finite-difference errors increase the cloud-top entrainment rate from zero to a positive value in actual situations. The fractional entrainment rate for updrafts is determined to vary only slightly with height and to decrease only slowly as the cloud radius increases, while the fractional detrainment rate for updrafts increases with height.

  4. Laboratory experiments on stability and entrainment of oceanic stratocumulus. Part 2: Entrainment experiment

    NASA Technical Reports Server (NTRS)

    Shy, Shenqyang S.

    1990-01-01

    A stratified interface is stable to the buoyancy reversal instability for surprisingly large values of D (buoyancy reversal parameter). A new instability mechanism is proposed, which considers the mixing process at the interface. For the type of density curves studied here, under strong perturbations, the mixed parcel must have a buoyancy reversal comparable to the initial stratification before the interface is unstable. This is in accord with a simple model of the interface mixing process, as well as aircraft observations of long-live marine stratocumulus clouds. These clouds' remarkable longevity in the face of finite D indicates that they can be stable (Hanson, 1984; Albrecht et al., 1985; Siems et al., 1989). It is suggested that buoyancy reversal as well as the disturbance must be large for Cloudtop Entrainment Stability. The effect of buoyancy reversal (evaporative cooling) does not always enhance the entrainment rate over that in the inert case, but it may be negligible if Ri (Richardson number) is large (Ri is larger than 50) and D is small (D is smaller than 0.5). This work may shed some light on the fundamental mechanism of the breakup process of the subtropical stratocumulus clouds into tradewind cumulus. These results may also be related to the instability in the Weddell Sea off of Antarctica.

  5. Turning Off Entrainment: The Role of Particle Size Distributions and Vent GeometryIn The Collapse of Volcanic Jets

    NASA Astrophysics Data System (ADS)

    Jessop, D.; Jellinek, M.; Roche, O.

    2014-12-01

    Volcanic jets can undergo gravitational collapse to produce pyroclastic density currents (PDCs), or loft material several tens of kilometres and spread out as an ash cloud. The key ingredient that determines which of these two phenomena will occur is the turbulent entrainment of atmospheric air, which adds buoyancy to the jet. Classical models of eruption columns assume that the rate of entrainment is fixed and ~10% of the upflow rate of the jet. In particular, the efficiency of entrainment is assumed to be independent of the vent shape as well as the physical properties of the pyroclastic mixture. However, we show that the presence of particles of certain particle-size distributions (PSDs) in the jet can have a significant effect on the entrainment rate owing to their buoyancy and inertia. As a consequence, the conditions for collapse as previously identified must be revisited. In particular, there is a possibility for an eruption to produce both a buoyant column and a collapsing fountain. Using scaled analogue experiments, we test the likelyhood of collapse and the production of pyroclastic flows according to the source geometry and particle-size distributions.

  6. Disordered speech disrupts conversational entrainment: a study of acoustic-prosodic entrainment and communicative success in populations with communication challenges

    PubMed Central

    Borrie, Stephanie A.; Lubold, Nichola; Pon-Barry, Heather

    2015-01-01

    Conversational entrainment, a pervasive communication phenomenon in which dialogue partners adapt their behaviors to align more closely with one another, is considered essential for successful spoken interaction. While well-established in other disciplines, this phenomenon has received limited attention in the field of speech pathology and the study of communication breakdowns in clinical populations. The current study examined acoustic-prosodic entrainment, as well as a measure of communicative success, in three distinctly different dialogue groups: (i) healthy native vs. healthy native speakers (Control), (ii) healthy native vs. foreign-accented speakers (Accented), and (iii) healthy native vs. dysarthric speakers (Disordered). Dialogue group comparisons revealed significant differences in how the groups entrain on particular acoustic–prosodic features, including pitch, intensity, and jitter. Most notably, the Disordered dialogues were characterized by significantly less acoustic-prosodic entrainment than the Control dialogues. Further, a positive relationship between entrainment indices and communicative success was identified. These results suggest that the study of conversational entrainment in speech pathology will have essential implications for both scientific theory and clinical application in this domain. PMID:26321996

  7. Disordered speech disrupts conversational entrainment: a study of acoustic-prosodic entrainment and communicative success in populations with communication challenges.

    PubMed

    Borrie, Stephanie A; Lubold, Nichola; Pon-Barry, Heather

    2015-01-01

    Conversational entrainment, a pervasive communication phenomenon in which dialogue partners adapt their behaviors to align more closely with one another, is considered essential for successful spoken interaction. While well-established in other disciplines, this phenomenon has received limited attention in the field of speech pathology and the study of communication breakdowns in clinical populations. The current study examined acoustic-prosodic entrainment, as well as a measure of communicative success, in three distinctly different dialogue groups: (i) healthy native vs. healthy native speakers (Control), (ii) healthy native vs. foreign-accented speakers (Accented), and (iii) healthy native vs. dysarthric speakers (Disordered). Dialogue group comparisons revealed significant differences in how the groups entrain on particular acoustic-prosodic features, including pitch, intensity, and jitter. Most notably, the Disordered dialogues were characterized by significantly less acoustic-prosodic entrainment than the Control dialogues. Further, a positive relationship between entrainment indices and communicative success was identified. These results suggest that the study of conversational entrainment in speech pathology will have essential implications for both scientific theory and clinical application in this domain. PMID:26321996

  8. A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population

    PubMed Central

    Tashi, Tsewang; Lorenzo, Felipe Ramos; Feusier, Julie Ellen; Mir, Hyder

    2016-01-01

    The Kashmiri population is an ethno-linguistic group that resides in the Kashmir Valley in northern India. A longstanding hypothesis is that this population derives ancestry from Jewish and/or Greek sources. There is historical and archaeological evidence of ancient Greek presence in India and Kashmir. Further, some historical accounts suggest ancient Hebrew ancestry as well. To date, it has not been determined whether signatures of Greek or Jewish admixture can be detected in the Kashmiri population. Using genome-wide genotyping and admixture detection methods, we determined there are no significant or substantial signs of Greek or Jewish admixture in modern-day Kashmiris. The ancestry of Kashmiri Tibetans was also determined, which showed signs of admixture with populations from northern India and west Eurasia. These results contribute to our understanding of the existing population structure in northern India and its surrounding geographical areas. PMID:27490348

  9. Stability of admixture containing morphine sulfate, bupivacaine hydrochloride, and clonidine hydrochloride in an implantable infusion system.

    PubMed

    Classen, Ashley M; Wimbish, Gary H; Kupiec, Thomas C

    2004-12-01

    Intrathecal infusion is often performed using drug combinations. This study was conducted to evaluate the stability of the admixture of morphine sulfate, bupivacaine hydrochloride, and clonidine hydrochloride when used in an implantable pump under simulated clinical use conditions. SynchroMed implantable pumps were filled with an admixture and incubated at 37 degrees C for a period of 90 days. Drug admixture stored in glass vials at 4 degrees C and at 37 degrees C served as controls. Samples which included pump reservoir and catheter delivered aliquots were collected every 30 days and analyzed for drug concentrations using a stability-indicating HPLC method. All drugs contained in the admixture were stable and the original concentrations remained greater than 96%. Over 90 days, and with the pump at the simulated body temperature of 37 degrees C, there were no evident heat catalyzed or device catalyzed reactions. PMID:15589086

  10. Admixture enhanced controlled low-strength material for direct underwater injection with minimal cross-contamination

    SciTech Connect

    Hepworth, H.K.; Davidson, J.S.; Hooyman, J.L.

    1997-03-01

    Commercially available admixtures have been developed for placing traditional concrete products under water. This paper evaluates adapting anti-washout admixture (AWA) and high range water reducing admixture (HRWRA) products to enhance controlled low-strength materials (CLSMs) for underwater placement. A simple experimental scale model (based on dynamic and geometric similitude) of typical grout pump emplacement equipment has been developed to determine the percentage of cementing material washed out. The objective of this study was to identify proportions of admixtures and underwater CLSM emplacement procedures which would minimize the cross-contamination of the displaced water while maintaining the advantages of CLSM. Since the displaced water from radioactively contaminated systems must be subsequently treated prior to release to the environment, the amount of cross-contamination is important for cases in which cementing material could form hard sludges in a water treatment facility and contaminate the in-place CLSM stabilization medium.

  11. Final Report - "Foaming and Antifoaming and Gas Entrainment in Radioactive Waste Pretreatment and Immobilization Processes"

    SciTech Connect

    Wasan, Darsh T.

    2007-10-09

    The Savannah River Site (SRS) and Hanford site are in the process of stabilizing millions of gallons of radioactive waste slurries remaining from production of nuclear materials for the Department of Energy (DOE). The Defense Waste Processing Facility (DWPF) at SRS is currently vitrifying the waste in borosilicate glass, while the facilities at the Hanford site are in the construction phase. Both processes utilize slurry-fed joule-heated melters to vitrify the waste slurries. The DWPF has experienced difficulty during operations. The cause of the operational problems has been attributed to foaming, gas entrainment and the rheological properties of the process slurries. The rheological properties of the waste slurries limit the total solids content that can be processed by the remote equipment during the pretreatment and meter feed processes. Highly viscous material can lead to air entrainment during agitation and difficulties with pump operations. Excessive foaming in waste evaporators can cause carryover of radionuclides and non-radioactive waste to the condensate system. Experimental and theoretical investigations of the surface phenomena, suspension rheology and bubble generation of interactions that lead to foaming and air entrainment problems in the DOE High Level and Low Activity Radioactive Waste separation and immobilization processes were pursued under this project. The first major task accomplished in the grant proposal involved development of a theoretical model of the phenomenon of foaming in a three-phase gas-liquid-solid slurry system. This work was presented in a recently completed Ph.D. thesis (9). The second major task involved the investigation of the inter-particle interaction and microstructure formation in a model slurry by the batch sedimentation method. Both experiments and modeling studies were carried out. The results were presented in a recently completed Ph.D. thesis. The third task involved the use of laser confocal microscopy to study

  12. Reducing the drying shrinkage of cement paste by admixture surface treatments

    SciTech Connect

    Xu, Y.; Chung, D.D.L.

    2000-02-01

    The drying shrinkage of concrete during curing is a source of residual stress and cracks. The problem is particularly severe for a large structure, such as a large concrete floor. Surface treatment of carbon fibers and/or silica fume by silane prior to using these admixtures in cement paste increases the effectiveness of these admixtures for reducing the drying shrinkage. Silane treatment of fibers is more effective than dichromate treatment or ozone treatment.

  13. The influence of compound admixtures on the properties of high-content slag cement

    SciTech Connect

    Dongxu, L.; Xuequan, W.; Jinlin, S.; Yujiang, W.

    2000-01-01

    Based on the activation theory of alkali and sulfate, the influence of compound admixtures on the properties of high-content slag cement was studied by testing the strength, pore structure, hydrates, and microstructure, Test results show that compound admixtures can obviously improve the properties of high-content slag cement. The emphasis of the present research is two-fold: substituting gypsum with anhydrite and calcining gypsum. These both can improve early and later performance.

  14. Effect of mineral viscosity-enhancing admixtures on the solidification of evaporator concentrates.

    PubMed

    Lin, Chung-Yung; Huang, Wan-Ting

    2015-11-15

    It is known that partial replacement of cement by viscosity-enhancing admixtures, also known as anti-washout admixtures, affects the quality of the waste form or concrete. To reduce the bleeding rate of the paste, the characteristics of various mineral viscosity-enhancing admixtures dispersed in saline solutions were investigated, including sedimentation and viscosity. The admixture candidates included fly ash, silica fume, bentonite, and palygorskite. The effect of these admixtures blended with a cement-based matrix on the bleeding rate of the solidification of evaporator concentrates was also examined in this paper. The experimental results show the palygorskite Type 400 is the best choice to improve the quality of waste form, due to its excellent suspension property in the saline solution. The bleeding rate of paste decreased as the dispersion volume of the admixture suspension increased. For consideration of the quality of waste forms and the concentrate loading, the optimization of the palygorskite/concentrate ratio of 15-17 wt% and solidification agent/concentrate ratio of 1.0-1.2 were adopted. With this recipe, the quality of waste forms resulting from the solidification of simulated and actual evaporator concentrates mainly containing chloride met the regulations' requirements. PMID:26087074

  15. Effect of Waterproofing Admixtures on the Flexural Strength and Corrosion Resistance of Concrete

    NASA Astrophysics Data System (ADS)

    Geetha, A.; Perumal, P.

    2012-02-01

    This paper deals about the flexural strength and corrosion behaviour of concrete using waterproofing admixtures. The effect of waterproofing admixtures on the corrosion behaviour of RCC specimen has been studied by conducting accelerated corrosion test. To identify the effect of corrosion in pull out strength, corrosion process was induced by means of accelerated corrosion procedure. To accelerate the reinforcement corrosion, direct electric current was impressed on the rebar embedded in the specimen using a DC power supply system that has a facility to adjust voltage. The addition of waterproofing admixtures also shows the improvement in the flexural strength of concrete has been studied by conducting flexural strength tests on the concrete prism specimen of size 100 × 100 × 500 mm with and without admixtures for various dosages and various curing periods of 7 and 28 days. The results showed that the presence of waterproofing admixtures always improves the corrosion resistance and thus increases the strength of concrete due to the hydrophobic action of waterproofing admixtures.

  16. Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population.

    PubMed

    Bray, Steven M; Mulle, Jennifer G; Dodd, Anne F; Pulver, Ann E; Wooding, Stephen; Warren, Stephen T

    2010-09-14

    The Ashkenazi Jewish (AJ) population has long been viewed as a genetic isolate, yet it is still unclear how population bottlenecks, admixture, or positive selection contribute to its genetic structure. Here we analyzed a large AJ cohort and found higher linkage disequilibrium (LD) and identity-by-descent relative to Europeans, as expected for an isolate. However, paradoxically we also found higher genetic diversity, a sign of an older or more admixed population but not of a long-term isolate. Recent reports have reaffirmed that the AJ population has a common Middle Eastern origin with other Jewish Diaspora populations, but also suggest that the AJ population, compared with other Jews, has had the most European admixture. Our analysis indeed revealed higher European admixture than predicted from previous Y-chromosome analyses. Moreover, we also show that admixture directly correlates with high LD, suggesting that admixture has increased both genetic diversity and LD in the AJ population. Additionally, we applied extended haplotype tests to determine whether positive selection can account for the level of AJ-prevalent diseases. We identified genomic regions under selection that account for lactose and alcohol tolerance, and although we found evidence for positive selection at some AJ-prevalent disease loci, the higher incidence of the majority of these diseases is likely the result of genetic drift following a bottleneck. Thus, the AJ population shows evidence of past founding events; however, admixture and selection have also strongly influenced its current genetic makeup. PMID:20798349

  17. A Novel Admixture-Based Pharmacogenetic Approach to Refine Warfarin Dosing in Caribbean Hispanics

    PubMed Central

    Claudio-Campos, Karla; Rivera-Miranda, Giselle; Bermúdez-Bosch, Luis; Renta, Jessicca Y.; Cadilla, Carmen L.; Cruz, Iadelisse; Feliu, Juan F.; Vergara, Cunegundo; Ruaño, Gualberto

    2016-01-01

    Aim This study is aimed at developing a novel admixture-adjusted pharmacogenomic approach to individually refine warfarin dosing in Caribbean Hispanic patients. Patients & Methods A multiple linear regression analysis of effective warfarin doses versus relevant genotypes, admixture, clinical and demographic factors was performed in 255 patients and further validated externally in another cohort of 55 individuals. Results The admixture-adjusted, genotype-guided warfarin dosing refinement algorithm developed in Caribbean Hispanics showed better predictability (R2 = 0.70, MAE = 0.72mg/day) than a clinical algorithm that excluded genotypes and admixture (R2 = 0.60, MAE = 0.99mg/day), and outperformed two prior pharmacogenetic algorithms in predicting effective dose in this population. For patients at the highest risk of adverse events, 45.5% of the dose predictions using the developed pharmacogenetic model resulted in ideal dose as compared with only 29% when using the clinical non-genetic algorithm (p<0.001). The admixture-driven pharmacogenetic algorithm predicted 58% of warfarin dose variance when externally validated in 55 individuals from an independent validation cohort (MAE = 0.89 mg/day, 24% mean bias). Conclusions Results supported our rationale to incorporate individual’s genotypes and unique admixture metrics into pharmacogenetic refinement models in order to increase predictability when expanding them to admixed populations like Caribbean Hispanics. Trial Registration ClinicalTrials.gov NCT01318057 PMID:26745506

  18. Population divergence with or without admixture: selecting models using an ABC approach

    PubMed Central

    Sousa, V C; Beaumont, M A; Fernandes, P; Coelho, M M; Chikhi, L

    2012-01-01

    Genetic data have been widely used to reconstruct the demographic history of populations, including the estimation of migration rates, divergence times and relative admixture contribution from different populations. Recently, increasing interest has been given to the ability of genetic data to distinguish alternative models. One of the issues that has plagued this kind of inference is that ancestral shared polymorphism is often difficult to separate from admixture or gene flow. Here, we applied an approximate Bayesian computation (ABC) approach to select the model that best fits microsatellite data among alternative splitting and admixture models. We performed a simulation study and showed that with reasonably large data sets (20 loci) it is possible to identify with a high level of accuracy the model that generated the data. This suggests that it is possible to distinguish genetic patterns due to past admixture events from those due to shared polymorphism (population split without admixture). We then apply this approach to microsatellite data from an endangered and endemic Iberian freshwater fish species, in which a clustering analysis suggested that one of the populations could be admixed. In contrast, our results suggest that the observed genetic patterns are better explained by a population split model without admixture. PMID:22146980

  19. Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping?

    PubMed

    Crawford, Jacob E; Nielsen, Rasmus

    2013-12-01

    Mapping adaptive trait loci (ATL) underlying ecological divergence is an essential step towards understanding the processes that generate phenotypic diversity. Technological advances have made it possible to sequence exomes in nonmodel systems, providing an efficient means of analysing functional genetic variants. Divergence scans of genetic markers for outlier loci, or 'divergence mapping', have been used to map locally adapted genes, but this approach is likely to be underpowered when background divergence is elevated. Genotype-phenotype association tests in admixed populations, or 'admixture mapping', may provide a useful approach for mapping locally adapted loci when neutral divergence is high. To determine the power and limits of divergence mapping, we simulated exomes containing a single ATL across two parental populations of varying neutral divergence, estimated divergence and quantified the power to identify the ATL. We found that divergence mapping had very high power when background FST is <0.2, but decreased dramatically above this level. To evaluate the utility of admixture mapping, we simulated exomes from admixed populations, then simulated phenotypes, conducted genotype-phenotype association tests and found that even two generations of random mating after admixture could provide high mapping power in scenarios where pure divergence mapping was ineffective (FST = 0.35). Moreover, admixture mapping had high power across all levels of divergence after 20 generations since admixture. Together with high-throughput exome sequencing, admixture mapping could be used to map ATL in systems such as Heliconius butterflies or Gryllus crickets when experimental design and analytical approach are chosen accordingly. PMID:24128338

  20. Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation

    PubMed Central

    Sanderson, Jean; Sudoyo, Herawati; Karafet, Tatiana M.; Hammer, Michael F.; Cox, Murray P.

    2015-01-01

    Admixture between long-separated populations is a defining feature of the genomes of many species. The mosaic block structure of admixed genomes can provide information about past contact events, including the time and extent of admixture. Here, we describe an improved wavelet-based technique that better characterizes ancestry block structure from observed genomic patterns. principal components analysis is first applied to genomic data to identify the primary population structure, followed by wavelet decomposition to develop a new characterization of local ancestry information along the chromosomes. For testing purposes, this method is applied to human genome-wide genotype data from Indonesia, as well as virtual genetic data generated using genome-scale sequential coalescent simulations under a wide range of admixture scenarios. Time of admixture is inferred using an approximate Bayesian computation framework, providing robust estimates of both admixture times and their associated levels of uncertainty. Crucially, we demonstrate that this revised wavelet approach, which we have released as the R package adwave, provides improved statistical power over existing wavelet-based techniques and can be used to address a broad range of admixture questions. PMID:25852078

  1. Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation.

    PubMed

    Sanderson, Jean; Sudoyo, Herawati; Karafet, Tatiana M; Hammer, Michael F; Cox, Murray P

    2015-06-01

    Admixture between long-separated populations is a defining feature of the genomes of many species. The mosaic block structure of admixed genomes can provide information about past contact events, including the time and extent of admixture. Here, we describe an improved wavelet-based technique that better characterizes ancestry block structure from observed genomic patterns. principal components analysis is first applied to genomic data to identify the primary population structure, followed by wavelet decomposition to develop a new characterization of local ancestry information along the chromosomes. For testing purposes, this method is applied to human genome-wide genotype data from Indonesia, as well as virtual genetic data generated using genome-scale sequential coalescent simulations under a wide range of admixture scenarios. Time of admixture is inferred using an approximate Bayesian computation framework, providing robust estimates of both admixture times and their associated levels of uncertainty. Crucially, we demonstrate that this revised wavelet approach, which we have released as the R package adwave, provides improved statistical power over existing wavelet-based techniques and can be used to address a broad range of admixture questions. PMID:25852078

  2. Admixture into and within sub-Saharan Africa

    PubMed Central

    Busby, George BJ; Band, Gavin; Si Le, Quang; Jallow, Muminatou; Bougama, Edith; Mangano, Valentina D; Amenga-Etego, Lucas N; Enimil, Anthony; Apinjoh, Tobias; Ndila, Carolyne M; Manjurano, Alphaxard; Nyirongo, Vysaul; Doumba, Ogobara; Rockett, Kirk A; Kwiatkowski, Dominic P; Spencer, Chris CA

    2016-01-01

    Similarity between two individuals in the combination of genetic markers along their chromosomes indicates shared ancestry and can be used to identify historical connections between different population groups due to admixture. We use a genome-wide, haplotype-based, analysis to characterise the structure of genetic diversity and gene-flow in a collection of 48 sub-Saharan African groups. We show that coastal populations experienced an influx of Eurasian haplotypes over the last 7000 years, and that Eastern and Southern Niger-Congo speaking groups share ancestry with Central West Africans as a result of recent population expansions. In fact, most sub-Saharan populations share ancestry with groups from outside of their current geographic region as a result of gene-flow within the last 4000 years. Our in-depth analysis provides insight into haplotype sharing across different ethno-linguistic groups and the recent movement of alleles into new environments, both of which are relevant to studies of genetic epidemiology. DOI: http://dx.doi.org/10.7554/eLife.15266.001 PMID:27324836

  3. Strong Selection at MHC in Mexicans since Admixture

    PubMed Central

    Zhou, Quan; Zhao, Liang; Guan, Yongtao

    2016-01-01

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the MHC region Mexicans have excessive African ancestral alleles compared to the rest of the genome, which is the hallmark of recent selection for admixed samples. The estimated selection coefficients are 0.05 and 0.07 for two datasets, which put our finding among the strongest known selections observed in humans, namely, lactase selection in northern Europeans and sickle-cell trait in Africans. Using inaccurate Amerindian training samples was a major concern for the credibility of previously reported selection signals in Latinos. Taking advantage of the flexibility of our statistical model, we devised a model fitting technique that can learn Amerindian ancestral haplotype from the admixed samples, which allows us to infer local ancestries for Mexicans using only European and African training samples. The strong selection signal at the MHC remains without Amerindian training samples. Finally, we note that medical history studies suggest such a strong selection at MHC is plausible in Mexicans. PMID:26863142

  4. Multiway admixture deconvolution using phased or unphased ancestral panels.

    PubMed

    Churchhouse, Claire; Marchini, Jonathan

    2013-01-01

    We describe a novel method for inferring the local ancestry of admixed individuals from dense genome-wide single nucleotide polymorphism data. The method, called MULTIMIX, allows multiple source populations, models population linkage disequilibrium between markers and is applicable to datasets in which the sample and source populations are either phased or unphased. The model is based upon a hidden Markov model of switches in ancestry between consecutive windows of loci. We model the observed haplotypes within each window using a multivariate normal distribution with parameters estimated from the ancestral panels. We present three methods to fit the model-Markov chain Monte Carlo sampling, the Expectation Maximization algorithm, and a Classification Expectation Maximization algorithm. The performance of our method on individuals simulated to be admixed with European and West African ancestry shows it to be comparable to HAPMIX, the ancestry calls of the two methods agreeing at 99.26% of loci across the three parameter groups. In addition to it being faster than HAPMIX, it is also found to perform well over a range of extent of admixture in a simulation involving three ancestral populations. In an analysis of real data, we estimate the contribution of European, West African and Native American ancestry to each locus in the Mexican samples of HapMap, giving estimates of ancestral proportions that are consistent with those previously reported. PMID:23136122

  5. A slide-rule for assessment of venous admixture.

    PubMed

    Zetterström, H

    1989-04-01

    Determination of venous admixture (physiological shunt, Qva/Qt) requires analysis of both arterial and mixed venous blood. When a pulmonary arterial catheter is not in use, the pulmonary oxygenating capacity may be assessed from arterial blood gas data, the fraction of inspired oxygen (FIO2) and an assumed value of the arterial-mixed venous oxygen content difference. To facilitate this process, a slide-rule based on the "virtual shunt" concept is presented. It permits rapid assessment of Qva/Qt from known values of arterial oxygen tension (PaO2) or saturation (SaO2) and FIO2 and may promote the choice of appropriate FIO2. The limitations of the slide-rule were studied theoretically and its validity was tested by comparing 100 determinations of virtual shunt with the corresponding Qva/Qt values. The slide-rule was found to estimate Qva/Qt more accurately than commonly used oxygenation indices such as the PaO2/FIO2 ratio. PMID:2499154

  6. Admixture into and within sub-Saharan Africa.

    PubMed

    Busby, George Bj; Band, Gavin; Si Le, Quang; Jallow, Muminatou; Bougama, Edith; Mangano, Valentina D; Amenga-Etego, Lucas N; Enimil, Anthony; Apinjoh, Tobias; Ndila, Carolyne M; Manjurano, Alphaxard; Nyirongo, Vysaul; Doumba, Ogobara; Rockett, Kirk A; Kwiatkowski, Dominic P; Spencer, Chris Ca

    2016-01-01

    Similarity between two individuals in the combination of genetic markers along their chromosomes indicates shared ancestry and can be used to identify historical connections between different population groups due to admixture. We use a genome-wide, haplotype-based, analysis to characterise the structure of genetic diversity and gene-flow in a collection of 48 sub-Saharan African groups. We show that coastal populations experienced an influx of Eurasian haplotypes over the last 7000 years, and that Eastern and Southern Niger-Congo speaking groups share ancestry with Central West Africans as a result of recent population expansions. In fact, most sub-Saharan populations share ancestry with groups from outside of their current geographic region as a result of gene-flow within the last 4000 years. Our in-depth analysis provides insight into haplotype sharing across different ethno-linguistic groups and the recent movement of alleles into new environments, both of which are relevant to studies of genetic epidemiology. PMID:27324836

  7. Strong Selection at MHC in Mexicans since Admixture.

    PubMed

    Zhou, Quan; Zhao, Liang; Guan, Yongtao

    2016-02-01

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the MHC region Mexicans have excessive African ancestral alleles compared to the rest of the genome, which is the hallmark of recent selection for admixed samples. The estimated selection coefficients are 0.05 and 0.07 for two datasets, which put our finding among the strongest known selections observed in humans, namely, lactase selection in northern Europeans and sickle-cell trait in Africans. Using inaccurate Amerindian training samples was a major concern for the credibility of previously reported selection signals in Latinos. Taking advantage of the flexibility of our statistical model, we devised a model fitting technique that can learn Amerindian ancestral haplotype from the admixed samples, which allows us to infer local ancestries for Mexicans using only European and African training samples. The strong selection signal at the MHC remains without Amerindian training samples. Finally, we note that medical history studies suggest such a strong selection at MHC is plausible in Mexicans. PMID:26863142

  8. On the entrainment dynamics of inergodic, non-stationary flows

    NASA Astrophysics Data System (ADS)

    Rosi, Giuseppe; Rival, David

    2014-11-01

    Entrainment is typically studied through the conditional averaging along the turbulent non-turbulent interface (TNTI) of ergodic flows. However, this method is unsuitable for inergodic, non-stationary flows, as the TNTI is non-similar at different points in space and time. To understand how a TNTI's mean time dependence effects entrainment, the current study investigates the transport of irrotational fluid into a vortex forming behind an accelerating plate. The plate accelerates to a final velocity within a full-, half- and quarter-chord tow. Phase-averaged, planar, particle tracking velocimetry data is acquired and the forward finite-time Lyapunov exponent and vorticity fields are used to identify the TNTI. The TNTI is then represented by a contour, which is used to approximate the entrainment rate and investigate the transport mechanisms across the TNTI. Early results show that increasing acceleration suppresses vortex growth and entrainment. We hypothesize that shear-layer structure is integral to entrainment by altering the feeding rate of rotational fluid and the TNTI's convexity. The hypothesis is tested by altering plate-edge geometry and by varying the final chord-based Reynolds number from 5000 to 20 000. Natural Sciences and Engineering Council of Canada.

  9. Simulating entrainment and particle fluxes in stratified estuaries

    SciTech Connect

    Jensen, A.; Jirka, G.; Lion, L.W.; Brunk, B.

    1999-04-01

    Settling and entrainment are the dominant processes governing noncohesive particle concentration throughout the water column of salt-wedge estuaries. Determination of the relative contribution of these transport processes is complicated by vertical gradients in turbulence and fluid density. A differential-turbulence column (DTC) was designed to simulate a vertical section of a natural water column. With satisfactory characterization of turbulence dissipation and saltwater entrainment, the DTC facilitates controlled studies of suspended particles under estuarine conditions. The vertical decay of turbulence in the DTC was found to obey standard scaling law relations when the characteristic length scale for turbulence in the apparatus was incorporated. The entrainment rate of a density interface also followed established grid-stirred turbulence scaling laws. These relations were used to model the change in concentration of noncohesive particles above a density interface. Model simulations and experimental data from the DTC were consistent over the range of conditions encountered in natural salt-wedge estuaries. Results suggest that when the ratio of entrainment rate to particle settling velocity is small, sedimentation is the dominant transport process, while entrainment becomes significant as the ratio increases.

  10. Transport, Evolution and Entrainment of Asian Dust/Pollution into the Pacific Marine Boundary

    NASA Astrophysics Data System (ADS)

    Clarke, A. D.; McNaughton, C. S.; Kapustin, V.; Vetter, O.; Dibb, J. E.; Anderson, B. E.; Browell, E. V.; Carmichael, G.; Landing, B.

    2007-05-01

    Various airborne and ship based studies over the past several years have allowed us to measure Asian dust and pollution aerosol from near its source to locations up to 10,000km downwind where it was entrained into the marine boundary layer (MBL). Dust was found to accumulate up to half of the soluble species such as sulfate and nitrate during passage through pollution regions in Asia before being lofted into the free troposphere near Japan. At times, transport in the free troposphere included regions of subsidence in high pressure regions that brought these "rivers" of dust and pollution down to the top of the MBL. Shipboard measurements and lidar data indicated both clear air entrainment and convective activity, associated with the passage of low pressure systems, facilitated dust transport through the inversion. High temperature volatilization of particles in the MBL up to 900C was used to remove most sulfates, nitrates, carbon and sea-salt to leave only dust measured and sized by an optical particle counter. These shipboard data and concurrent chemical measurements revealed the relation between entrainment of pollution and dust into the MBL associated with passage of high pressure systems. Subsequent passage of low pressure systems also revealed scavenging and removal of aerosol through precipitation to the ocean surface. This process appears to be a common removal pathway for dust over the Pacific and a mechanism for supplying the ocean surface with soluble iron and aluminum to the ocean surface. Measurements in the free troposphere and MBL also captured various aspects of these processes. Airborne missions flown north of Hawaii during the NASA PEM-Tropics and IMPEX missions characterized the vertical structure of subsiding dust and pollution. In-flight mapping of the dust/pollution layers and structure using the NASA Langley DIAL LIDAR show a sloping, subsiding Asian air-mass entraining into the marine boundary layer (MBL). In-situ measurements of the aerosol

  11. Entrainment in High-Velocity, High Temperature Plasma Jets Part I: Experimental Results

    SciTech Connect

    Fincke, J.R.; Crawford, D.M.; Snyder, S.C.; Swank, W.D.; Haggard, D.C.; Williamson, R.L.

    2002-03-27

    The development of a high-velocity, high-temperature argon plasma jet issuing into air has been investigated. In particular the entrainment of the surrounding air, its effect on the temperature and velocity profiles and the subsequent mixing and dissociation of oxygen has been examined in detail. The total concentration of oxygen and the velocity and temperature profiles in the jet were obtained from an enthalpy probe. High-resolution Thomson scattering provided an independent measure of plasma velocity and temperature, validating enthalpy probe measurements and providing non-intrusive measurements near the nozzle exit. The concentration of atomic oxygen was obtained from two-photon Laser Induced Fluorescence (LIF). Molecular oxygen concentration and temperature was obtained from Coherent Anti-Stokes Raman Spectroscopy (CARS). It was found that both the incompleteness of mixing at the molecular scale and the rate of oxygen dissociation and recombination effects jet behavior.

  12. Aeolian Induced Erosion and Particle Entrainment

    NASA Technical Reports Server (NTRS)

    Saint, Brandon

    2007-01-01

    The Granular Physics Department at The Kennedy Space Center is addressing the problem of erosion on the lunar surface. The early stages of research required an instrument that would produce erosion at a specific rate with a specific sample variation. This paper focuses on the development and experimental procedures to measure and record erosion rates. This was done with the construction of an open air wind tunnel, and examining the relationship between airflow and particle motion.

  13. Potent social synchronization can override photic entrainment of circadian rhythms

    PubMed Central

    Fuchikawa, Taro; Eban-Rothschild, Ada; Nagari, Moshe; Shemesh, Yair; Bloch, Guy

    2016-01-01

    Circadian rhythms in behaviour and physiology are important for animal health and survival. Studies with individually isolated animals in the laboratory have consistently emphasized the dominant role of light for the entrainment of circadian rhythms to relevant environmental cycles. Although in nature interactions with conspecifics are functionally significant, social signals are typically not considered important time-givers for the animal circadian clock. Our results challenge this view. By studying honeybees in an ecologically relevant context and using a massive data set, we demonstrate that social entrainment can be potent, may act without direct contact with other individuals and does not rely on gating the exposure to light. We show for the first time that social time cues stably entrain the clock, even in animals experiencing conflicting photic and social environmental cycles. These findings add to the growing appreciation for the importance of studying circadian rhythms in ecologically relevant contexts. PMID:27210069

  14. Potent social synchronization can override photic entrainment of circadian rhythms.

    PubMed

    Fuchikawa, Taro; Eban-Rothschild, Ada; Nagari, Moshe; Shemesh, Yair; Bloch, Guy

    2016-01-01

    Circadian rhythms in behaviour and physiology are important for animal health and survival. Studies with individually isolated animals in the laboratory have consistently emphasized the dominant role of light for the entrainment of circadian rhythms to relevant environmental cycles. Although in nature interactions with conspecifics are functionally significant, social signals are typically not considered important time-givers for the animal circadian clock. Our results challenge this view. By studying honeybees in an ecologically relevant context and using a massive data set, we demonstrate that social entrainment can be potent, may act without direct contact with other individuals and does not rely on gating the exposure to light. We show for the first time that social time cues stably entrain the clock, even in animals experiencing conflicting photic and social environmental cycles. These findings add to the growing appreciation for the importance of studying circadian rhythms in ecologically relevant contexts. PMID:27210069

  15. Heavy Impurity Entrainment in the Parallel Flows of CSDX

    NASA Astrophysics Data System (ADS)

    Gosselin, Jordan; Thakur, Saikat; Tynan, George

    2014-10-01

    The lifetime of the plasma facing components (PFCs) in a tokamak, governed primarily by material erosion and redeposition, has been identified as a crucial research topic. While some work has been done that shows evidence of the entrainment of impurities in linear machines and in tokamaks, detailed controlled studies of entrainment in plasma flows are harder to come by. Recently, experiments in CSDX have shown increasing parallel ion velocity positively correlated with increasing magnetic field. In an effort to study the effects of the background flow on impurity transport, a laser blow off apparatus was installed on the Controlled Shear Decorelation eXperiment (a 3m long linear helicon source operated plasma machine). Results are shown for parallel entrainment of Bismuth impurities in a relatively light background Ar plasma (5.2 mass ratio).

  16. On robustness of phase resetting to cell division under entrainment.

    PubMed

    Ahmed, Hafiz; Ushirobira, Rosane; Efimov, Denis

    2015-12-21

    The problem of phase synchronization for a population of genetic oscillators (circadian clocks, synthetic oscillators, etc.) is considered in this paper, taking into account a cell division process and a common entrainment input in the population. The proposed analysis approach is based on the Phase Response Curve (PRC) model of an oscillator (the first order reduced model obtained for the linearized system and inputs with infinitesimal amplitude). The occurrence of cell division introduces state resetting in the model, placing it in the class of hybrid systems. It is shown that without common entraining input in all oscillators, the cell division acts as a disturbance causing phase drift, while the presence of entrainment guarantees boundedness of synchronization phase errors in the population. The performance of the obtained solutions is demonstrated via computer experiments for two different models of circadian/genetic oscillators (Neurospora׳s circadian oscillation model and the repressilator). PMID:26463679

  17. Saturation point representation of cloud-top entrainment instability

    NASA Technical Reports Server (NTRS)

    Boers, Reinout

    1991-01-01

    Cloud-top entrainment instability was investigated using a mixing line analysis. Mixing time scales are closely related to the actual size of the parcel, so that local instabilities are largely dependent on the scales of mixing near the cloud top. Given a fixed transport velocity, variation over a small range of parcel length scales (parcel mixing velocities) turns an energy-producing mixing process into an energy-consuming mixing process. It is suggested that a single criterion for cloud-top entrainment instability will not be found due to the role of at least three factors operating more or less independently; the stability of the mixing line, the entrainment speed, and the strength of the internal boundary-layer circulation.

  18. Entrainment into a stratocumulus layer with distributed radiative cooling

    NASA Technical Reports Server (NTRS)

    Randall, D. A.

    1980-01-01

    It is shown that the radiative cooling of a cloud layer strongly influences the turbulent flux profiles and the entrainment rate, and that the radiative cooling should be modeled as acting inside the turbulent layer. Numerical experiments demonstrate that a cloud-topped mixed-layer model, similar to that of Lilly (1968), is quite sensitive to delta (p) sub R, the depth of the radiatively cooled layer near cloud top. As delta (p) sub R increases, the model's sensitivity to the entrainment assumption is markedly heightened; for large delta (p) sub R the cloud top and cloud base rise as the entrainment parameter k is increased, while for small delta (p) sub R an increase in k has almost no effect. The model is most sensitive to delta (p) sub R for the cold-water, strong-divergence regime of greatest interest.

  19. Extensive Admixture and Selective Pressure Across the Sahel Belt.

    PubMed

    Triska, Petr; Soares, Pedro; Patin, Etienne; Fernandes, Veronica; Cerny, Viktor; Pereira, Luisa

    2015-12-01

    Genome-wide studies of African populations have the potential to reveal powerful insights into the evolution of our species, as these diverse populations have been exposed to intense selective pressures imposed by infectious diseases, diet, and environmental factors. Within Africa, the Sahel Belt extensively overlaps the geographical center of several endemic infections such as malaria, trypanosomiasis, meningitis, and hemorrhagic fevers. We screened 2.5 million single nucleotide polymorphisms in 161 individuals from 13 Sahelian populations, which together with published data cover Western, Central, and Eastern Sahel, and include both nomadic and sedentary groups. We confirmed the role of this Belt as a main corridor for human migrations across the continent. Strong admixture was observed in both Central and Eastern Sahelian populations, with North Africans and Near Eastern/Arabians, respectively, but it was inexistent in Western Sahelian populations. Genome-wide local ancestry inference in admixed Sahelian populations revealed several candidate regions that were significantly enriched for non-autochthonous haplotypes, and many showed to be under positive selection. The DARC gene region in Arabs and Nubians was enriched for African ancestry, whereas the RAB3GAP1/LCT/MCM6 region in Oromo, the TAS2R gene family in Fulani, and the ALMS1/NAT8 in Turkana and Samburu were enriched for non-African ancestry. Signals of positive selection varied in terms of geographic amplitude. Some genomic regions were selected across the Belt, the most striking example being the malaria-related DARC gene. Others were Western-specific (oxytocin, calcium, and heart pathways), Eastern-specific (lipid pathways), or even population-restricted (TAS2R genes in Fulani, which may reflect sexual selection). PMID:26614524

  20. Extensive Admixture and Selective Pressure Across the Sahel Belt

    PubMed Central

    Triska, Petr; Soares, Pedro; Patin, Etienne; Fernandes, Veronica; Cerny, Viktor; Pereira, Luisa

    2015-01-01

    Genome-wide studies of African populations have the potential to reveal powerful insights into the evolution of our species, as these diverse populations have been exposed to intense selective pressures imposed by infectious diseases, diet, and environmental factors. Within Africa, the Sahel Belt extensively overlaps the geographical center of several endemic infections such as malaria, trypanosomiasis, meningitis, and hemorrhagic fevers. We screened 2.5 million single nucleotide polymorphisms in 161 individuals from 13 Sahelian populations, which together with published data cover Western, Central, and Eastern Sahel, and include both nomadic and sedentary groups. We confirmed the role of this Belt as a main corridor for human migrations across the continent. Strong admixture was observed in both Central and Eastern Sahelian populations, with North Africans and Near Eastern/Arabians, respectively, but it was inexistent in Western Sahelian populations. Genome-wide local ancestry inference in admixed Sahelian populations revealed several candidate regions that were significantly enriched for non-autochthonous haplotypes, and many showed to be under positive selection. The DARC gene region in Arabs and Nubians was enriched for African ancestry, whereas the RAB3GAP1/LCT/MCM6 region in Oromo, the TAS2R gene family in Fulani, and the ALMS1/NAT8 in Turkana and Samburu were enriched for non-African ancestry. Signals of positive selection varied in terms of geographic amplitude. Some genomic regions were selected across the Belt, the most striking example being the malaria-related DARC gene. Others were Western-specific (oxytocin, calcium, and heart pathways), Eastern-specific (lipid pathways), or even population-restricted (TAS2R genes in Fulani, which may reflect sexual selection). PMID:26614524

  1. Admixture mapping of lung cancer in 1812 African-Americans

    PubMed Central

    Schwartz, Ann G.; Wenzlaff, Angela S.; Bock, Cathryn H.; Ruterbusch, Julie J.; Chen, Wei; Cote, Michele L.; Artis, Amanda S.; Van Dyke, Alison L.; Land, Susan J.; Harris, Curtis C.; Pine, Sharon R.; Spitz, Margaret R.; Amos, Christopher I.; Levin, Albert M.; McKeigue, Paul M.

    2011-01-01

    Lung cancer continues to be the leading cause of cancer death in the USA and the best example of a cancer with undisputed evidence of environmental risk. However, a genetic contribution to lung cancer has also been demonstrated by studies of familial aggregation, family-based linkage, candidate gene studies and most recently genome-wide association studies (GWAS). The African-American population has been underrepresented in these genetic studies and has patterns of cigarette use and linkage disequilibrium that differ from patterns in other populations. Therefore, studies in African-Americans can provide complementary data to localize lung cancer susceptibility genes and explore smoking dependence-related genes. We used admixture mapping to further characterize genetic risk of lung cancer in a series of 837 African-American lung cancer cases and 975 African-American controls genotyped at 1344 ancestry informative single-nucleotide polymorphisms. Both case-only and case–control analyses were conducted using ADMIXMAP adjusted for age, sex, pack-years of smoking, family history of lung cancer, history of emphysema and study site. In case-only analyses, excess European ancestry was observed over a wide region on chromosome 1 with the largest excess seen at rs6587361 for non-small-cell lung cancer (NSCLC) (Z-score = −4.33; P = 1.5 × 10−5) and for women with NSCLC (Z-score = −4.82; P = 1.4 × 10−6). Excess African ancestry was also observed on chromosome 3q with a peak Z-score of 3.33 (P = 0.0009) at rs181696 among ever smokers with NSCLC. These results add to the findings from the GWAS in Caucasian populations and suggest novel regions of interest. PMID:21115650

  2. Spatial assessment of Argentinean genetic admixture with geographical information systems.

    PubMed

    Diaz-Lacava, Amalia; Walier, Maja; Penacino, Gustavo; Wienker, Thomas F; Baur, Max P

    2011-08-01

    In recent years there has been much attention to Argentinean population stratification. We were interested in assessing population stratification from a geographical perspective and summarizing it in form of maps. We mapped the genetic admixture of the extant male population in central and northern Argentina on the basis of forensic Y-chromosomal haplotypes. We addressed the question which group of genetically similar individuals is predominant in this area. Haplotypes containing seven Y-chromosomal short tandem repeat polymorphisms (Y-STRs), also known as microsatellites - DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393 - were constructed for 145 individuals, recruited in 10 provinces. 97 distinct haplotypes were clustered into four clusters according to molecular distances. A genetic geostatistical analysis was conducted with the open-source geographical information system GRASS GIS. For each haplotype cluster, the according frequency was spatially interpolated over the total study area. Juxtaposing the interpolation surfaces, we screened point-wisely the maximal frequency as well as the label of the respective cluster. The screening results were combined in one summary map. We repeated this procedure for the second maximal frequencies. The resulting maps subdivide the study area into continuous regions comprising one predominant group of similar haplotypes. The first summary map divides the study area into three regions and the second summary map divides the area into four regions. The results of our analysis indicate that two groups of similar European haplotypes alternatively dominate the largest extension of the Argentinean territory. A third group, including South-American haplotypes, dominates the indigenous northwestern Argentinean area. The last group, including worldwide dispersed haplotypes, preponderates in frequency in second place in central Argentina. Our findings confirm a widespread European paternal ancestry, a substantial Amerindian

  3. Implications of the admixture process in skin color molecular assessment.

    PubMed

    Cerqueira, Caio Cesar Silva de; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice. PMID:24809478

  4. Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

    PubMed Central

    Decker, Jared E.; McKay, Stephanie D.; Rolf, Megan M.; Kim, JaeWoo; Molina Alcalá, Antonio; Sonstegard, Tad S.; Hanotte, Olivier; Götherström, Anders; Seabury, Christopher M.; Praharani, Lisa; Babar, Masroor Ellahi; Correia de Almeida Regitano, Luciana; Yildiz, Mehmet Ali; Heaton, Michael P.; Liu, Wan-Sheng; Lei, Chu-Zhao; Reecy, James M.; Saif-Ur-Rehman, Muhammad; Schnabel, Robert D.; Taylor, Jeremy F.

    2014-01-01

    The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers scored in 1,543 animals, we evaluate the population structure of 134 domesticated bovid breeds. Regardless of the analytical method or sample subset, the three major groups of Asian indicine, Eurasian taurine, and African taurine were consistently observed. Patterns of geographic dispersal resulting from co-migration with humans and exportation are recognizable in phylogenetic networks. All analytical methods reveal patterns of hybridization which occurred after divergence. Using 19 breeds, we map the cline of indicine introgression into Africa. We infer that African taurine possess a large portion of wild African auroch ancestry, causing their divergence from Eurasian taurine. We detect exportation patterns in Asia and identify a cline of Eurasian taurine/indicine hybridization in Asia. We also identify the influence of species other than Bos taurus taurus and B. t. indicus in the formation of Asian breeds. We detect the pronounced influence of Shorthorn cattle in the formation of European breeds. Iberian and Italian cattle possess introgression from African taurine. American Criollo cattle originate from Iberia, and not directly from Africa with African ancestry inherited via Iberian ancestors. Indicine introgression into American cattle occurred in the Americas, and not Europe. We argue that cattle migration, movement and trading followed by admixture have been important forces in shaping modern bovine genomic variation. PMID:24675901

  5. Admixture mapping of genetic variants for uterine fibroids.

    PubMed

    Zhang, Kui; Wiener, Howard; Aissani, Brahim

    2015-09-01

    Uterine leiomyoma (UL) are benign neoplasms arising from the smooth muscle cells of the uterus. One of the established risk factors for UL is African American ethnicity. Studies have consistently shown that African Americans have two to three times higher risk compared with that of non-Hispanic Whites. However, there is still no adequate explanation for the higher risk among African Americans. To investigate the genetic contribution to the observed difference between the African American and European American populations, we conducted an admixture scan in 525 eligible African American women participants to the NIEHS uterine fibroid study (NIEHS-UFS). In models with no stratification, we found multiple genomic regions showing significant and suggestive evidence of association, with chromosomal band 2q32.2 at rs256552 showing the highest score (Z-score=7.86, Bonferroni adjusted P-value=5.5 × 10(-12)) consistent with the suggestive evidence reported for this genomic region in the Black Women's Health Study. However, in models stratified by the body mass index (BMI) covariate, chromosome 1q42.2 was the sole genomic region that consistently showed suggestive associations across the BMI categories tested (Z-scores ⩽-3.96, Bonferroni adjusted P-values ⩽0.107). In age-stratified models, a significant association was observed in the older category (age >40) reaching a Z-score of 6.44 (Bonferroni-adjusted P-value=1.64 × 10(-7)) at rs256552. The mean percentage of European ancestry among cases was lower than that among controls in the NIEHS-UFS study. However, our study did not show a significant association between mean percentage of European ancestry and UL. PMID:26040208

  6. Admixture mapping of genetic variants for uterine fibroids

    PubMed Central

    Zhang, Kui; Wiener, Howard; Aissani, Brahim

    2015-01-01

    Uterine leiomyoma (UL) are benign neoplasms arising from the smooth muscle cells of the uterus. One of the established risk factors for UL is African American ethnicity. Studies have consistently shown that African Americans have 2-3 times higher risk compared with that of non-Hispanic Whites. However, there is still no adequate explanation for the higher risk among African Americans. To investigate the genetic contribution to the observed difference between the African American and European American populations, we conducted an admixture scan in 525 eligible African American women participants to the NIEHS uterine fibroid study (NIEHS-UFS). In models with no stratification, we found multiple genomic regions showing significant and suggestive evidence of association, with chromosomal band 2q32.2 at rs256552 showing the highest score (Z-score = 7.86, Bonferroni adjusted p-value = 5.5×10-12) consistent with the suggestive evidence reported for this genomic region in the Black Women's Health Study. However, in models stratified by the body mass index (BMI) covariate, chromosomal 1q42.2 was the sole genomic region that consistently showed suggestive associations across the BMI categories tested (Z-scores ≤ -3.96, Bonferroni adjusted p-values ≤ 0.107). In age-stratified models, a significant association was observed in the older category (age > 40) reaching a Z-score of 6.44 (Bonferroni-adjusted p-value = 1.64 × 10-7) at rs256552. The mean percentage of European ancestry among cases was lower than that among controls in the NIEHS-UFS study. However, our study did not show a significant association between mean percentage of European ancestry and UL. PMID:26040208

  7. Implications of the Admixture Process in Skin Color Molecular Assessment

    PubMed Central

    de Cerqueira, Caio Cesar Silva; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice. PMID:24809478

  8. Inferring separate parental admixture components in unknown DNA samples using autosomal SNPs.

    PubMed

    Crouch, Daniel J M; Weale, Michael E

    2012-12-01

    The identification of ancestral admixture proportions for human DNA samples has recently had success in forensic cases. Current methods infer admixture proportions for the target sample, but not for their parents, which provides an additional layer of information that may aid certain forensic investigations. We describe new maximum likelihood methods (LEAPFrOG and LEAPFrOG Expectation Maximisation), for inferring both an individual's admixture proportions and the admixture proportions possessed by the unobserved parents, with respect to two or more source populations, using single-nucleotide polymorphism data typed only in the target individual. This is achieved by examining the increase in heterozygosity in the offspring of parents who are from different populations or who represent different mixtures from a number of source populations. We validated the methods via simulation; combining chromosomes from different Hapmap Phase III population samples to emulate first-generation admixture. Performance was strong for individuals with mixed African/European (YRI/CEU) ancestry, but poor for mixed Japanese/Chinese (JPT/CHB) ancestry, reflecting the difficulty in distinguishing closely related source populations. A total of 11 African-American trios were used to compare the parental admixture inferred from their own genotypes against that inferred purely from their offspring genotypes. We examined the performance of 34 ancestry informative markers from a multiplex kit for ancestry inference. Simulations showed that estimates were unreliable when parents had similar admixture, suggesting more markers are needed. Our results demonstrate that ancestral backgrounds of case samples and their parents are obtainable to aid in forensic investigations, provided that high-throughput methods are adopted by the forensic community. PMID:22739346

  9. Stability of total nutrient admixtures in a dual-chamber flexible container.

    PubMed

    Tripp, M G; Menon, S K; Mikrut, B A

    1990-11-01

    The stability of total nutrient admixtures (TNAs) prepared from dextrose and amino acid injections commercially packaged in a dual-chamber container and a safflower-soybean oil fat emulsion was studied. The admixtures studied were divided into two groups. Group 1 admixtures represented 14 combinations of Aminosyn II, dextrose, and Liposyn II. Group 2 admixtures represented 10 combinations of Aminosyn II with Electrolytes, dextrose, and Liposyn II. Amino acid concentrations of 7, 8.5, and 10%, dextrose concentrations of 10, 20, 40, and 50%, and 10 and 20% fat emulsion were used. After the amino acid and dextrose injections were mixed in their original container (Nutrimix, Abbott Laboratories), the fat emulsion was added. One of two combinations of electrolytes and trace metals was then added. Multivitamins were added to each TNA just before 24-hour storage at room temperature (25 +/- 4 degrees C). Admixtures were tested initially and at the conclusion of storage periods of 24 hours at room temperature or nine days at 5 degrees C followed by 24 hours at room temperature. Measurements of pH, emulsion particle size, and weight percent of oil particles larger than 5 microns in diameter (HIAC) were made after visual inspection of each admixture. In selected admixtures, concentrations of individual amino acids and dextrose were determined by chromatographic techniques initially and at the conclusion of storage. The TNAs retained a uniform milk-like appearance throughout both storage periods. The pH values, particle size, HIAC measurements, and amino acid and dextrose concentrations remained essentially unchanged.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:2126163

  10. Evidence for Little Shallow Entrainment in Starting Mantle Plumes

    NASA Astrophysics Data System (ADS)

    Lohmann, F. C.; Phipps Morgan, J.; Hort, M.

    2005-12-01

    Basalts from intraplate or hotspot ocean islands show distinct geochemical signatures. Their diversity in composition is generally believed to result from the upwelling plume entraining shallow mantle material during ascent, while potentially also entraining other deep regions of the mantle. Here we present results from analogue laboratory experiments and numerical modelling that there is evidence for little shallow entrainment into ascending mantle plumes, i.e. most of the plume signature is inherited from the source. We conducted laboratory experiments using glucose syrup contaminated with glass beads to visualize fluid flow and origin. The plume is initiated by heating from below or by injecting hot, uncontaminated syrup. Particle movement is captured by a CCD camera. In our numerical experiments we solve the Stokes equations for a viscous fluid at infinite Prandtl number with passive tracer particles being used to track fluid flow and entrainment rates, simulating laboratory as well as mantle conditions. In both analogue experiments and numerical models we observe the classical plume structure being embedded in a `sheath' of material from the plume source region that retains little of the original temperature anomaly of the plume source. Yet, this sheath ascends in the `slipstream' of the plume at speeds close to the ascent speed of the plume head, and effectively prevents the entrainment of surrounding material into the plume head or plume tail. We find that the source region is most effectively sampled by an ascending plume and that compositional variations in the source region are preserved during plume ascent. The plume center and plume sheath combined are composed of up to 85% source material. However, there is also evidence of significant entrainment of up to 30% of surrounding material into the outer layers of the plume sheath. Entrainment rates are found to be influenced by mantle composition and structure, with the radial viscosity profile of the

  11. Fluctuations of a receding contact line near the entrainment transition

    NASA Astrophysics Data System (ADS)

    Bico, Jose; Delon, Giles; Fermigier, Marc

    2004-11-01

    We study experimentally the fluctuations of a contact line receding on a plane solid substrate. The contact line is perturbed by localized defects and we follow the relaxation of perturbations induced by these defects, as a function of the mean contact line speed and wavelengths characteristic of the perturbations. We compare our results with theoretical predictions by Golestanian and Raphael showing a divergence of the relaxation time at the entrainment transition (when the receding velocity exceeds a critical value, the liquid is entrained by the solid).

  12. Observing Entrainment Processes Using a Small Unmanned Aerial Vehicle: A Feasibility Study

    NASA Astrophysics Data System (ADS)

    Martin, Sabrina; Beyrich, Frank; Bange, Jens

    2014-03-01

    Measurement flights with the meteorological mini aerial vehicle (MAV) were performed in spring 2011 to assess the capability of an unmanned aerial vehicle (UAV) to measure the structure of the transition zone between the convective boundary layer and the stably stratified free atmosphere. The campaign took place at the Meteorological Observatory Lindenberg/Richard-Aßmann-Observatory of the German Meteorological Service. Besides the MAV flights, observations were made from a 12-m and a 99-m tower, a sodar, two ceilometers, radiosondes, and a tethered balloon with sensor packages at six different levels. MAV measurements were intentionally combined with remote sensing systems. The height range of the entrainment zone as well as its diurnal cycle were provided by the remote sensing instruments. The UAV provided the high-resolution in situ data of temperature and wind for the study of turbulent processes. It is shown that the MAV is able to maintain constant altitude with very small deviations—a pre-requisite to study processes inside the often quite thin entrainment zone and that MAV high-resolution wind and temperature measurements allow for very detailed studies of the fine structure of the atmosphere and thus for the identification of quite local and/or short-duration processes such as overshooting thermals or downward intrusions of warm air. Spatial series measured by the MAV during horizontal flights show turbulent exchange of heat in short turbulent bursts at heights close to and within the entrainment zone. Scaled vertical profiles of vertical velocity, potential temperature variance, and sensible heat flux confirm the general shape found by previous measurements and numerical studies.

  13. Entrainment of radio frequency chaff by wind as a function of surface aerodynamic roughness.

    PubMed

    Gillies, John A; Nickling, William G

    2003-02-01

    Radio frequency (RF) chaff (approximately 2-cm x 25-microm diameter aluminum-coated glass silicate cylinders) released by military aircraft during testing and training activities has the potential to become entrained by wind upon settling to the Earth's surface. Once entrained from the surface there is the potential for RF chaff to be abraded and produce PM10 and PM2.5, which are regulated pollutants and pose health concerns. A series of portable wind tunnel tests were carried out to examine the propensity of RF chaff to become entrained by wind by defining the relationship between the threshold friction velocity of RF chaff (u(*t RF chaff)) and aerodynamic roughness (z(o)) of surfaces onto which it may deposit. The test surfaces were of varying roughness including types near the Naval Air Station (NAS), Fallon, NV, where RF chaff is released. The u(*t) of this fibrous material ranged from 0.14 m/sec for a smooth playa to 0.82 m/sec for a rough crusted playa surface with larger cobble-sized (approximately 6-26-cm diameter) rocks rising above the surface. The u(*t RF chaff) is dependent on the z(o) of the surface onto which it falls as well as the physical characteristics of the roughness. The wind regime of Fallon would allow for chaff suspension events to occur should it settle on typical surfaces in the area. However, the wind climatology of this area makes the probability of such events relatively low. PMID:12617294

  14. Mathematical modeling of heat exchange between mine air and rock mass during fire

    SciTech Connect

    A.E. Krasnoshtein; B.P. Kazakov; A.V. Shalimov

    2006-05-15

    Solution of problems on heat exchange between ventilating air and rock mass and on gas admixture propagation in mine workings serve as a base for considering changes in heat-gas-air state at a mine after inflammation. The presented mathematical relations allow calculation of a varied velocity and movement direction of air flows, their temperatures and smoking conditions during fire.

  15. Variation of spatial distribution of excited species in He/Ar/O2 admixtures in an atmospheric pressure plasma jet

    NASA Astrophysics Data System (ADS)

    Taylor, Sarah; Leiweke, Robert; Ganguly, Biswa

    2012-10-01

    Variation of cathode directed streamer initiated pulsed glow current and spatial distribution of excited species outside the 4 mm capillary of a He/Ar/O2 plasma jet have been measured using a partially optically transmitting conducting cathode. For 18 mm inter-electrode gap, 15 ns rise time unipolar 12.5 kV pulsed applied voltage with 6 kHz repetition rate, the pulsed glow current peaked at 150 mA with 1% Ar added to He flow, compared to 100 mA in pure He, into ambient air at 1.6 SLM. Spatiotemporally and spectrally resolved head-on emission images from He 3^3D->2^3P, Ar 2p1->1s2, O ^5P->^5S, and N2^+ B^2σ->X^2σ transitions were acquired along the discharge propagation axis using a 5 ns gate ICCD camera. A fiber-couple PMT lens viewing normal to the propagation axis collected the same species emission, at 4 and 8 mm from the capillary tip, in order to correlate temporal emission profiles from streamer to glow transition. For each admixture, the ICCD radial emission profile for each excited species peaks on axis with a mean FWHM of ˜1.5 mm, whereas for pure He the intensity distribution of all excited species is annular. Concurrent with the increased discharge conductivity with 1% Ar admixture, the 777 nm O atom emission intensity increased in both streamer and glow phases.

  16. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs.

    PubMed

    Monzón, J; Kays, R; Dykhuizen, D E

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single-nucleotide polymorphisms in 427 canids to examine the prevalence, spatial distribution and the ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, revealed a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. PMID:24148003

  17. Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure

    PubMed Central

    Mimno, David; Blei, David M.; Engelhardt, Barbara E.

    2015-01-01

    Admixture models are a ubiquitous approach to capture latent population structure in genetic samples. Despite the widespread application of admixture models, little thought has been devoted to the quality of the model fit or the accuracy of the estimates of parameters of interest for a particular study. Here we develop methods for validating admixture models based on posterior predictive checks (PPCs), a Bayesian method for assessing the quality of fit of a statistical model to a specific dataset. We develop PPCs for five population-level statistics of interest: within-population genetic variation, background linkage disequilibrium, number of ancestral populations, between-population genetic variation, and the downstream use of admixture parameters to correct for population structure in association studies. Using PPCs, we evaluate the quality of the admixture model fit to four qualitatively different population genetic datasets: the population reference sample (POPRES) European individuals, the HapMap phase 3 individuals, continental Indians, and African American individuals. We found that the same model fitted to different genomic studies resulted in highly study-specific results when evaluated using PPCs, illustrating the utility of PPCs for model-based analyses in large genomic studies. PMID:26071445

  18. A deterministic model of admixture and genetic introgression: the case of Neanderthal and Cro-Magnon.

    PubMed

    Forhan, Gerald; Martiel, Jean-Louis; Blum, Michael G B

    2008-11-01

    There is an ongoing debate in the field of human evolution about the possible contribution of Neanderthals to the modern human gene pool. To study how the Neanderthal private alleles may have spread over the genes of Homo sapiens, we propose a deterministic model based on recursive equations and ordinary differential equations. If the Neanderthal population was large compared to the Homo sapiens population at the beginning of the contact period, we show that genetic introgression should have been fast and complete meaning that most of the Neanderthal private alleles should be found in the modern human gene pool in case of ancient admixture. In order to test/reject ancient admixture from genome-wide data, we incorporate the model of genetic introgression into a statistical hypothesis-testing framework. We show that the power to reject ancient admixture increases as the ratio, at the time of putative admixture, of the population size of Homo sapiens over that of Neanderthal decreases. We find that the power to reject ancient admixture might be particularly low if the population size of Homo sapiens was comparable to the Neanderthal population size. PMID:18768141

  19. Mechanical characteristics of hardened concrete with different mineral admixtures: a review.

    PubMed

    Ayub, Tehmina; Khan, Sadaqat Ullah; Memon, Fareed Ahmed

    2014-01-01

    The available literature identifies that the addition of mineral admixture as partial replacement of cement improves the microstructure of the concrete (i.e., porosity and pore size distribution) as well as increasing the mechanical characteristics such as drying shrinkage and creep, compressive strength, tensile strength, flexural strength, and modulus of elasticity; however, no single document is available in which review and comparison of the influence of the addition of these mineral admixtures on the mechanical characteristics of the hardened pozzolanic concretes are presented. In this paper, based on the reported results in the literature, mechanical characteristics of hardened concrete partially containing mineral admixtures including fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA) are discussed and it is concluded that the content and particle size of mineral admixture are the parameters which significantly influence the mechanical properties of concrete. All mineral admixtures enhance the mechanical properties of concrete except FA and GGBS which do not show a significant effect on the strength of concrete at 28 days; however, gain in strength at later ages is considerable. Moreover, the comparison of the mechanical characteristics of different pozzolanic concretes suggests that RHA and SF are competitive. PMID:24688443

  20. Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure.

    PubMed

    Mimno, David; Blei, David M; Engelhardt, Barbara E

    2015-06-30

    Admixture models are a ubiquitous approach to capture latent population structure in genetic samples. Despite the widespread application of admixture models, little thought has been devoted to the quality of the model fit or the accuracy of the estimates of parameters of interest for a particular study. Here we develop methods for validating admixture models based on posterior predictive checks (PPCs), a Bayesian method for assessing the quality of fit of a statistical model to a specific dataset. We develop PPCs for five population-level statistics of interest: within-population genetic variation, background linkage disequilibrium, number of ancestral populations, between-population genetic variation, and the downstream use of admixture parameters to correct for population structure in association studies. Using PPCs, we evaluate the quality of the admixture model fit to four qualitatively different population genetic datasets: the population reference sample (POPRES) European individuals, the HapMap phase 3 individuals, continental Indians, and African American individuals. We found that the same model fitted to different genomic studies resulted in highly study-specific results when evaluated using PPCs, illustrating the utility of PPCs for model-based analyses in large genomic studies. PMID:26071445

  1. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs

    PubMed Central

    Monzón, J.; Kays, R.; Dykhuizen, D. E.

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single nucleotide polymorphisms in 427 canids in order to examine the prevalence, spatial distribution, and ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, reveal a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. PMID:24148003

  2. Mechanical Characteristics of Hardened Concrete with Different Mineral Admixtures: A Review

    PubMed Central

    2014-01-01

    The available literature identifies that the addition of mineral admixture as partial replacement of cement improves the microstructure of the concrete (i.e., porosity and pore size distribution) as well as increasing the mechanical characteristics such as drying shrinkage and creep, compressive strength, tensile strength, flexural strength, and modulus of elasticity; however, no single document is available in which review and comparison of the influence of the addition of these mineral admixtures on the mechanical characteristics of the hardened pozzolanic concretes are presented. In this paper, based on the reported results in the literature, mechanical characteristics of hardened concrete partially containing mineral admixtures including fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA) are discussed and it is concluded that the content and particle size of mineral admixture are the parameters which significantly influence the mechanical properties of concrete. All mineral admixtures enhance the mechanical properties of concrete except FA and GGBS which do not show a significant effect on the strength of concrete at 28 days; however, gain in strength at later ages is considerable. Moreover, the comparison of the mechanical characteristics of different pozzolanic concretes suggests that RHA and SF are competitive. PMID:24688443

  3. Vasoactive intestinal polypeptide entrains circadian rhythms in astrocytes.

    PubMed

    Marpegan, Luciano; Krall, Thomas J; Herzog, Erik D

    2009-04-01

    Many mammalian cell types show daily rhythms in gene expression driven by a circadian pacemaker. For example, cultured astrocytes display circadian rhythms in Period1 and Period2 expression. It is not known, however, how or which intercellular factors synchronize and sustain rhythmicity in astrocytes. Because astrocytes are highly sensitive to vasoactive intestinal polypeptide (VIP), a neuropeptide released by neurons and important for the coordination of daily cycling, the authors hypothesized that VIP entrains circadian rhythms in astrocytes. They used astrocyte cultures derived from knock-in mice containing a bioluminescent reporter of PERIOD2 (PER2) protein, to assess the effects of VIP on the rhythmic properties of astrocytes. VIP induced a dose-dependent increase in the peak-to-trough amplitude of the ensemble rhythms of PER2 expression with maximal effects near 100 nM VIP and threshold values between 0.1 and 1 nM. VIP also induced dose- and phase-dependent shifts in PER2 rhythms and daily VIP administration entrained bioluminescence rhythms of astrocytes to a predicted phase angle. This is the first demonstration that a neuropeptide can entrain glial cells to a phase predicted by a phase-response curve. The authors conclude that VIP potently entrains astrocytes in vitro and is a candidate for coordinating daily rhythms among glia in the brain. PMID:19346450

  4. Vasoactive intestinal polypeptide entrains circadian rhythms in astrocytes

    PubMed Central

    Marpegan, Luciano; Krall, Thomas J.; Herzog, Erik D.

    2009-01-01

    Many mammalian cell types show daily rhythms in gene expression driven by a circadian pacemaker. For example, cultured astrocytes display circadian rhythms in Period1 and Period2 expression. It is not known, however, how or which intercellular factors synchronize and sustain rhythmicity in astrocytes. Because astrocytes are highly sensitive to vasoactive intestinal polypeptide (VIP), a neuropeptide released by neurons and important for the coordination of daily cycling, we hypothesized that VIP entrains circadian rhythms in astrocytes. We used astrocyte cultures derived from knock-in mice containing a bioluminescent reporter of PERIOD2 (PER2) protein, to assess the effects of VIP on the rhythmic properties of astrocytes. VIP induced a dose-dependent increase in the peak-to-trough amplitude of the ensemble rhythms of PER2 expression with maximal effects near 100nM VIP and threshold values between 0.1 and 1 nM. VIP also induced dose- and phase-dependent shifts in PER2 rhythms and daily VIP administration entrained bioluminescence rhythms of astrocytes to a predicted phase angle. This is the first demonstration that a neuropeptide can entrain glial cells to a phase predicted by a phase response curve. We conclude that VIP potently entrains astrocytes in vitro and is a candidate for coordinating daily rhythms among glia in the brain. PMID:19346450

  5. Queueing-Based Synchronization and Entrainment for Synthetic Gene Oscillators

    NASA Astrophysics Data System (ADS)

    Mather, William; Butzin, Nicholas; Hochendoner, Philip; Ogle, Curtis

    Synthetic gene oscillators have been a major focus of synthetic biology research since the beginning of the field 15 years ago. They have proven to be useful both for biotechnological applications as well as a testing ground to significantly develop our understanding of the design principles behind synthetic and native gene oscillators. In particular, the principles governing synchronization and entrainment of biological oscillators have been explored using a synthetic biology approach. Our work combines experimental and theoretical approaches to specifically investigate how a bottleneck for protein degradation, which is present in most if not all existing synthetic oscillators, can be leveraged to robustly synchronize and entrain biological oscillators. We use both the terminology and mathematical tools of queueing theory to intuitively explain the role of this bottleneck in both synchronization and entrainment, which extends prior work demonstrating the usefulness of queueing theory in synthetic and native gene circuits. We conclude with an investigation of how synchronization and entrainment may be sensitive to the presence of multiple proteolytic pathways in a cell that couple weakly through crosstalk. This work was supported by NSF Grant #1330180.

  6. EFFECTS OF CONTINUOUS CHLORINATION ON ENTRAINED ESTUARINE PLANKTON

    EPA Science Inventory

    The effects of continuous chlorination on entrained plankton are investigated in tests using running sea water and adenosine triphosphate (ATP) as an indicator of biomass. Effects were measured by bioluminescence with the use of luciferin-luciferase reagents from firefly lanterns...

  7. The neurochemical basis of photic entrainment of the circadian pacemaker

    NASA Technical Reports Server (NTRS)

    Rea, Michael A.; Buckley, Becky; Lutton, Lewis M.

    1992-01-01

    Circadian rhythmicity in mammals is controlled by the action of a light-entrainable hypothalamus, in association with two cell clusters known as the supra chiasmatic nuclei (SCN). In the absence of temporal environmental clues, this pacemaker continues to measure time by an endogenous mechanism (clock), driving biochemical, physiological, and behavioral rhythms that reflect the natural period of the pacemaker oscillation. This endogenous period usually differs slightly from 24 hours (i.e., circadian). When mammals are maintained under a 24 hour light-dark (LD) cycle, the pacemaker becomes entrained such that the period of the pacemaker oscillation matches that of the LD cycle. Potentially entraining photic information is conveyed to the SCN via a direct retinal projection, the retinohypothalamic tract (RHT). RHT neurotransmission is thought to be mediated by the release of excitatory amino acids (EAA) in the SCN. In support of this hypothesis, recent experiments using nocturnal rodents have shown that EAA antagonists block the effects of light on pacemaker-driven behavioral rhythms, and attenuate light induced gene expression in SCN cells. An understanding of the neurochemical basis of the photic entrainment process would facilitate the development of pharmacological strategies for maintaining synchrony among shift workers in environments, such as the Space Station, which provide unreliable or conflicting temporal photic clues.

  8. The effect of simulated evaporative cooling on thermal entrainment

    NASA Astrophysics Data System (ADS)

    Zhang, Qing; Cotel, Aline

    1998-11-01

    The effect of simulated evaporative cooling on the entrainment of a thermal impinging on a stratified interface is investigated experimentally. Evaporative cooling in atmospheric clouds results in buoyancy reversal, where the mixed fluid is denser than either parent parcel. This is realized in the laboratory by using a mixture of ethyl alcohol and ethylene glycohol in aqueous solution. A thermal is formed by releasing a small volume of buoyant fluid from the bottom of a lucite tank. It rises first through a relatively dense lower layer and then impinges on a thin stratified interface, above which is a relatively light layer. The entrainment of upper layer across the interface is measured optically. The entrainment rate is found to obey a Ri-3/2 power law for values of the buoyancy reversal parameter, D*, between 0 and 0.5. The entrainment rate is independent of D* for a certain range of Ri. This is consistent with the behavior of the buoyancy-reversing thermal in an unstratified environment observed by Johari.

  9. A viscous-inviscid interaction model of jet entrainment

    NASA Technical Reports Server (NTRS)

    Wilmoth, R. G.; Dash, S. M.

    1981-01-01

    A viscous-inviscid interaction model for predicting jet entrainment effects on axisymmetric, nozzle afterbodies at subsonic speeds is presented. The model is based on a displacement thickness correction to the inviscid jet boundary that accounts for mixing-induced streamline deflections in the inviscid region. The displacement correction is shown to be related to the local mass entrainment rate and, for thin mixing layers, the model is shown to be analogous to displacement models used in conventional boundary-layer interaction theory. A method is presented for computing the entrainment rate by an overlaid mixing layer model that accounts for the nonsimilar behavior and pressure gradients occurring in the near field region. An iterative scheme for coupling the model to analyses for the external inviscid flow, the external boundary layer, and the inviscid jet exhaust is also given. Results are presented that illustrate the qualitative behavior of the entrainment interaction under various flow conditions and that demonstrate the validity of the model by comparisons with experiment.

  10. Lexical Entrainment and Lexical Differentiation in Reference Phrase Choice

    ERIC Educational Resources Information Center

    Van Der Wege, Mija M.

    2009-01-01

    Speakers reuse prior references to objects when choosing reference phrases, a phenomenon known as lexical entrainment. One explanation is that speakers want to maintain a set of previously established referential precedents. Speakers may also contrast any new referents against this previously established set, thereby avoiding applying the same…

  11. Cumulus clouds - Early aircraft observations and entrainment hypotheses

    NASA Technical Reports Server (NTRS)

    Simpson, J.

    1983-01-01

    The history of cumulus research in the decade following World War II is reviewed in the perspective of the new ideas and advances made during the subsequent generation. Emphasis is placed upon pioneering aircraft measurements, evidence for entrainment, the early model attempts and their attendant controversies.

  12. A vortex entrainment model applied to slender delta wings

    NASA Technical Reports Server (NTRS)

    Coe, P. L., Jr.

    1974-01-01

    A mathematical model of the vortex flow over a slender sharp-edged delta wing is proposed, and is shown to provide good agreement with the experiment. Although the technique requires experimental data in the form of the vortex core locations, it does account for the previously ignored mass entrainment of the vortex core.

  13. Suppression of competing speech through entrainment of cortical oscillations.

    PubMed

    Horton, Cort; D'Zmura, Michael; Srinivasan, Ramesh

    2013-06-01

    People are highly skilled at attending to one speaker in the presence of competitors, but the neural mechanisms supporting this remain unclear. Recent studies have argued that the auditory system enhances the gain of a speech stream relative to competitors by entraining (or "phase-locking") to the rhythmic structure in its acoustic envelope, thus ensuring that syllables arrive during periods of high neuronal excitability. We hypothesized that such a mechanism could also suppress a competing speech stream by ensuring that syllables arrive during periods of low neuronal excitability. To test this, we analyzed high-density EEG recorded from human adults while they attended to one of two competing, naturalistic speech streams. By calculating the cross-correlation between the EEG channels and the speech envelopes, we found evidence of entrainment to the attended speech's acoustic envelope as well as weaker yet significant entrainment to the unattended speech's envelope. An independent component analysis (ICA) decomposition of the data revealed sources in the posterior temporal cortices that displayed robust correlations to both the attended and unattended envelopes. Critically, in these components the signs of the correlations when attended were opposite those when unattended, consistent with the hypothesized entrainment-based suppressive mechanism. PMID:23515789

  14. Genetic admixture and lineage separation in a southern Andean plant.

    PubMed

    Morello, Santiago; Sede, Silvana M

    2016-01-01

    varieties of E. alpina: var. alpina is more closely related to E. rubra and other species than to its own counterpart E. alpina var. carmelitana Geometric morphometrics analysis (Elliptic Fourier descriptors) revealed significant differences in leaf shape between varieties. We found that diversity in Escallonia species analyzed here is geographically structured and deep divergence between varieties of E. alpina could be associated to ancient evolutionary events like orogeny. Admixture in southern populations could be the result of hybridization at the margins of the parental species' distribution range. PMID:27179539

  15. Genetic admixture and lineage separation in a southern Andean plant

    PubMed Central

    Morello, Santiago; Sede, Silvana M.

    2016-01-01

    varieties of E. alpina: var. alpina is more closely related to E. rubra and other species than to its own counterpart E. alpina var. carmelitana. Geometric morphometrics analysis (Elliptic Fourier descriptors) revealed significant differences in leaf shape between varieties. We found that diversity in Escallonia species analyzed here is geographically structured and deep divergence between varieties of E. alpina could be associated to ancient evolutionary events like orogeny. Admixture in southern populations could be the result of hybridization at the margins of the parental species’ distribution range. PMID:27179539

  16. Airborne observation of mixing across the entrainment zone during PARADE 2011

    NASA Astrophysics Data System (ADS)

    Berkes, F.; Hoor, P.; Bozem, H.; Kunkel, D.; Sprenger, M.; Henne, S.

    2015-10-01

    This study presents the analysis of the structure and air mass characteristics of the lower atmosphere during the field campaign PARADE (PArticles and RAdicals: Diel observations of the impact of urban and biogenic Emissions) on Mount Kleiner Feldberg in southwestern Germany during late summer 2011. We analysed measurements of meteorological variables (temperature, moisture, pressure, wind speed and direction) from radio soundings and of chemical tracers (carbon dioxide, ozone) from aircraft measurements. We focus on the thermodynamic and dynamic properties, that control the chemical distribution of atmospheric constituents in the boundary layer. We show that the evolution of tracer profiles of CO2 and O3 indicate mixing across the inversion layer (or entrainment zone). This finding is supported by the analysis of tracer-tracer correlations which are indicative for mixing and the relation of tracer profiles in relation to the evolution of the boundary layer height deduced from radio soundings. The study shows the relevance of entrainment processes for the lower troposphere in general and specifically that the tracer-tracer correlation method can be used to identify mixing and irreversible exchange processes across the inversion layer.

  17. Saltation thresholds and entrainment of fine particles at Earth and Martian pressures

    NASA Technical Reports Server (NTRS)

    Leach, Rodman; Greeley, Ronald; Pollack, James

    1989-01-01

    An open circuit wind tunnel designed to operate in a large vacuum chamber was built at NASA-Ames to investigate saltation threshold, flux, deflation rates, and other aeolian phenomena on the planet Mars. The vacuum chamber will operate at pressures as low as 4 mbar, and the tunnel operates at windspeeds as high as 150 m/sec. Either air or CO2 can be used as a working fluid. It was found that, to a first order approximation, the same dynamic pressure was required at Martian pressure to entrain or saltate particles as was required on Earth, although wind and particle speed are considerably higher at Martian pressure. A 2nd wind tunnel, designed to operate aboard the NASA KC-135 0-g aircraft to obtain information on the effect of gravity on saltation threshold and the interparticle force at 0-g, is also described and test data presented. Some of the experiments are summarized and various aspects of low pressure aeolian entrainment for particles 12 to 100 micron in diameter are discussed, some of them unique to low pressure testing and some common in Earth pressure particle transport testing. The facility, the modes of operation, and the materials used are described.

  18. Airborne observation of mixing across the entrainment zone during PARADE 2011

    NASA Astrophysics Data System (ADS)

    Berkes, Florian; Hoor, Peter; Bozem, Heiko; Kunkel, Daniel; Sprenger, Michael; Henne, Stephan

    2016-05-01

    This study presents the analysis of the structure and air mass characteristics of the lower atmosphere during the field campaign PARADE (PArticles and RAdicals: Diel observations of the impact of urban and biogenic Emissions) on Mount Kleiner Feldberg in southwestern Germany during late summer 2011. We analysed measurements of meteorological variables (temperature, moisture, pressure, wind speed and direction) from radio soundings and of chemical tracers (carbon dioxide, ozone) from aircraft measurements. We focus on the thermodynamic and dynamic properties that control the chemical distribution of atmospheric constituents in the boundary layer. We show that the evolution of tracer profiles of CO2 and O3 indicate mixing across the inversion layer (or entrainment zone). This finding is supported by the analysis of tracer-tracer correlations which are indicative for mixing and the relation of tracer profiles in relation to the evolution of the boundary layer height deduced from radio soundings. The study shows the relevance of entrainment processes for the lower troposphere in general and specifically that the tracer-tracer correlation method can be used to identify mixing and irreversible exchange processes across the inversion layer.

  19. Entrained neural oscillations in multiple frequency bands comodulate behavior

    PubMed Central

    Henry, Molly J.; Herrmann, Björn

    2014-01-01

    Our sensory environment is teeming with complex rhythmic structure, to which neural oscillations can become synchronized. Neural synchronization to environmental rhythms (entrainment) is hypothesized to shape human perception, as rhythmic structure acts to temporally organize cortical excitability. In the current human electroencephalography study, we investigated how behavior is influenced by neural oscillatory dynamics when the rhythmic fluctuations in the sensory environment take on a naturalistic degree of complexity. Listeners detected near-threshold gaps in auditory stimuli that were simultaneously modulated in frequency (frequency modulation, 3.1 Hz) and amplitude (amplitude modulation, 5.075 Hz); modulation rates and types were chosen to mimic the complex rhythmic structure of natural speech. Neural oscillations were entrained by both the frequency modulation and amplitude modulation in the stimulation. Critically, listeners’ target-detection accuracy depended on the specific phase–phase relationship between entrained neural oscillations in both the 3.1-Hz and 5.075-Hz frequency bands, with the best performance occurring when the respective troughs in both neural oscillations coincided. Neural-phase effects were specific to the frequency bands entrained by the rhythmic stimulation. Moreover, the degree of behavioral comodulation by neural phase in both frequency bands exceeded the degree of behavioral modulation by either frequency band alone. Our results elucidate how fluctuating excitability, within and across multiple entrained frequency bands, shapes the effective neural processing of environmental stimuli. More generally, the frequency-specific nature of behavioral comodulation effects suggests that environmental rhythms act to reduce the complexity of high-dimensional neural states. PMID:25267634

  20. Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA

    NASA Astrophysics Data System (ADS)

    Bercovici, Sivan; Geiger, Dan

    Admixture mapping is a gene mapping approach used for the identification of genomic regions harboring disease susceptibility genes in the case of recently admixed populations such as African Americans. We present a novel method for admixture mapping, called admixture aberration analysis (AAA), that uses a DNA pool of affected admixed individuals. We demonstrate through simulations that AAA is a powerful and economical mapping method under a range of scenarios, capturing complex human diseases such as hypertension and end stage kidney disease. The method has a low false-positive rate and is robust to deviation from model assumptions. Finally, we apply AAA on 600 prostate cancer-affected African Americans, replicating a known risk locus. Simulation results indicate that the method can yield over 96% reduction in genotyping. Our method is implemented as a Java program called AAAmap and is freely available.

  1. Admixture increases diversity in managed honey bees: reply to De la Rúa et al. (2013).

    PubMed

    Harpur, Brock A; Minaei, Shermineh; Kent, Clement F; Zayed, Amro

    2013-06-01

    De la Rúa et al. (2013) express some concerns about the conclusions of our recent study showing that management increases genetic diversity of honey bees (Apis mellifera) by promoting admixture (Harpur et al. 2012). We provide a brief review of the literature on the population genetics of A. mellifera and show that we utilized appropriate sampling methods to estimate genetic diversity in the focal populations. Our finding of higher genetic diversity in two managed A. mellifera populations on two different continents is expected to be the norm given the large number of studies documenting admixture in honey bees. Our study focused on elucidating how management affects genetic diversity in honey bees, not on how to best manage bee colonies. We do not endorse the intentional admixture of honey bee populations, and we agree with De la Rúa et al. (2013) that native honey bee subspecies should be conserved. PMID:24433573

  2. African and non-African admixture components in African Americans and an African Caribbean population.

    PubMed

    Murray, Tanda; Beaty, Terri H; Mathias, Rasika A; Rafaels, Nicholas; Grant, Audrey Virginia; Faruque, Mezbah U; Watson, Harold R; Ruczinski, Ingo; Dunston, Georgia M; Barnes, Kathleen C

    2010-09-01

    Admixture is a potential source of confounding in genetic association studies, so it becomes important to detect and estimate admixture in a sample of unrelated individuals. Populations of African descent in the US and the Caribbean share similar historical backgrounds but the distributions of African admixture may differ. We selected 416 ancestry informative markers (AIMs) to estimate and compare admixture proportions using STRUCTURE in 906 unrelated African Americans (AAs) and 294 Barbadians (ACs) from a study of asthma. This analysis showed AAs on average were 72.5% African, 19.6% European and 8% Asian, while ACs were 77.4% African, 15.9% European, and 6.7% Asian which were significantly different. A principal components analysis based on these AIMs yielded one primary eigenvector that explained 54.04% of the variation and captured a gradient from West African to European admixture. This principal component was highly correlated with African vs. European ancestry as estimated by STRUCTURE (r(2)=0.992, r(2)=0.912, respectively). To investigate other African contributions to African American and Barbadian admixture, we performed PCA on approximately 14,000 (14k) genome-wide SNPs in AAs, ACs, Yorubans, Luhya and Maasai African groups, and estimated genetic distances (F(ST)). We found AAs and ACs were closest genetically (F(ST)=0.008), and both were closer to the Yorubans than the other East African populations. In our sample of individuals of African descent, approximately 400 well-defined AIMs were just as good for detecting substructure as approximately 14,000 random SNPs drawn from a genome-wide panel of markers. PMID:20717976

  3. Estimated Entrainment of Dungeness Crab During Dredging For The Columbia River Channel Improvement Project

    SciTech Connect

    Pearson, Walter H.; Williams, Greg D.; Skalski, John R.

    2002-12-01

    The studies reported here focus on issues regarding the entrainment of Dungeness crab related to the proposed Columbia River Channel Improvement Project and provided direct measurements of crab entrainment rates at three locations (Desdomona Shoals, Upper Sands, and Miller Sands) from RM4 to RM24 during summer 2002. Entrainment rates for all age classes of crabs ranged from zero at Miller Sands to 0.224 crabs per cy at Desdemona Shoals in June 2002. The overall entrainment rate at Desdomona Shoals in September was 0.120 crabs per cy. A modified Dredge Impact Model (DIM) used the summer 2002 entrainment rates to project crab entrainment and adult equivalent loss and loss to the fishery for the Channel Improvement Project. To improve the projections, entrainment data from Flavel Bar is needed. The literature, analyses of salinity intrusion scenarios, and the summer 2002 site-specific data on entrainment and salinity all indicate that bottom salinity influences crab distribution and entrainment, especially at lower salinities. It is now clear from field measurements of entrainment rates and salinity during a period of low river flow (90-150 Kcfs) and high salinity intrusion that entrainment rates are zero where bottom salinity is less than 16 o/oo most of the time. Further, entrainment rates of 2+ and older crab fall with decreasing salinity in a clear and consistent manner. More elaboration of the crab distribution- salinity model, especially concerning salinity and the movements of 1+ crab, is needed.

  4. Effects of drying conditions, admixtures and specimen size on shrinkage strains

    SciTech Connect

    Al-Saleh, Saleh A. . E-mail: alsaleh@dr.com; Al-Zaid, Rajeh Z.

    2006-10-15

    The paper presents the results of an experimental investigation on the effects of drying conditions, specimen size and presence of plasticizing admixture on the development of shrinkage strains. The measurements are taken in a harsh (50 deg. C and 5% R.H.) and a moderate environment (28 deg. C and 50% R.H.). The results include strain development at various levels of cross sections of concrete prisms. The drying conditions are found to be the dominant parameter affecting the shrinkage strain development particularly in specimens of smaller sizes. The effect of plasticizing admixture on shrinkage strains is negligible.

  5. Fluid dynamics of pressurized, entrained coal gasifiers. Tenth quarterly technical progress report, April 1, 1996--June 30, 1996

    SciTech Connect

    Louge, M.Y.

    1996-10-01

    Pressurized, entrained gasification is a promising new technology for the clean and efficient combustion of coal. Its principle is to operate a coal gasifier at a high inlet gas velocity to increase the inflow of reactants, and at an elevated pressure to raise the overall efficiency of the process. Unfortunately, because of the extraordinary difficulties involved in performing measurements in hot, pressurized, high-velocity pilot plants, its fluid dynamics are largely unknown. Thus the designer cannot predict with certainty crucial phenomena Re erosion, heat transfer and solid capture. In this context, we are conducting a study of the fluid dynamics of Pressurized Entrained Coal Gasifiers (PECGs). The idea is to simulate the flows in generic industrial PECGs using dimensional similitude. To this end, we employ a unique entrained gas-solid flow facility with the flexibility to recycle -rather than discard- gases other than air. By matching five dimensionless parameters, suspensions in mixtures of helium, carbon dioxide and sulfur hexafluoride simulate the effects of pressure and scale-up on the fluid dynamics of PECGs. Because it operates under cold, atmospheric conditions, the laboratory facility is ideal for detailed measurements.

  6. Thermal creep-assisted dust lifting on Mars: Wind tunnel experiments for the entrainment threshold velocity

    NASA Astrophysics Data System (ADS)

    Küpper, Markus; Wurm, Gerhard

    2015-07-01

    In this work we present laboratory measurements on the reduction of the threshold friction velocity necessary for lifting dust if the dust bed is illuminated. Insolation of a porous soil establishes a temperature gradient. At low ambient pressure this gradient leads to thermal creep gas flow within the soil. This flow leads to a subsurface overpressure which supports lift imposed by wind. The wind tunnel was run with Mojave Mars Simulant and air at 3, 6, and 9mbar, to cover most of the pressure range at Martian surface levels. Our first measurements imply that the insolation of the Martian surface can reduce the entrainment threshold velocity between 4% and 19% for the conditions sampled with our experiments. An insolation activated soil might therefore provide additional support for aeolian particle transport at low wind speeds.

  7. Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

    NASA Technical Reports Server (NTRS)

    Vu, Bruce T.; Oliveira, Justin

    2011-01-01

    This paper describes the Computational Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing tests of the Taurus-II launch vehicle. The finite-rate chemistry is used to model the combustion process involving rocket propellant (RP-1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region, thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

  8. Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

    NASA Technical Reports Server (NTRS)

    Vu, Bruce; Oliveira, Justin

    2011-01-01

    This paper describes the Computation Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing test of the Taurus II launch vehicle. The finite rate chemistry is used to model the combustion process involving rocket propellant (RP 1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

  9. Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome

    PubMed Central

    Goldberg, Amy; Rosenberg, Noah A.

    2015-01-01

    Sex-biased demography, in which parameters governing migration and population size differ between females and males, has been studied through comparisons of X chromosomes, which are inherited sex-specifically, and autosomes, which are not. A common form of sex bias in humans is sex-biased admixture, in which at least one of the source populations differs in its proportions of females and males contributing to an admixed population. Studies of sex-biased admixture often examine the mean ancestry for markers on the X chromosome in relation to the autosomes. A simple framework noting that in a population with equally many females and males, two-thirds of X chromosomes appear in females, suggests that the mean X-chromosomal admixture fraction is a linear combination of female and male admixture parameters, with coefficients 2/3 and 1/3, respectively. Extending a mechanistic admixture model to accommodate the X chromosome, we demonstrate that this prediction is not generally true in admixture models, although it holds in the limit for an admixture process occurring as a single event. For a model with constant ongoing admixture, we determine the mean X-chromosomal admixture, comparing admixture on female and male X chromosomes to corresponding autosomal values. Surprisingly, in reanalyzing African-American genetic data to estimate sex-specific contributions from African and European sources, we find that the range of contributions compatible with the excess African ancestry on the X chromosome compared to autosomes has a wide spread, permitting scenarios either without male-biased contributions from Europe or without female-biased contributions from Africa. PMID:26209245

  10. Gradient layer entrainment in a thermohaline system with mixed layer circulation

    SciTech Connect

    Incropera, F.P.; Lents, C.E.; Viskanta, R.

    1986-11-01

    Entrainment of salt-stratified fluid into a bottom mixed layer is investigated under conditions for which mixing is driven by bottom heating and/or an imposed horizontal flow. Entrainment rate measurements and mixed layer flow visualization suggest that entrainment is strongly influenced by a shear mechanism involving both horizontal and vertical fluid velocity components. Under certain conditions, imposition of the horizontal flow inhibits the buoyancy flow and entrainment rates for combined mixing are less than those for pure buoyant mixing. Attempts to correlate entrainment rates in terms of conventional dimensionless parameters were unsuccessful.

  11. Magnetized neutron stars with superconducting cores: effect of entrainment

    NASA Astrophysics Data System (ADS)

    Palapanidis, K.; Stergioulas, N.; Lander, S. K.

    2015-09-01

    We construct equilibrium configurations of magnetized, two-fluid neutron stars using an iterative numerical method. Working in Newtonian framework we assume that the neutron star has two regions: the core, which is modelled as a two-component fluid consisting of type-II superconducting protons and superfluid neutrons, and the crust, a region composed of normal matter. Taking a new step towards more complete equilibrium models, we include the effect of entrainment, which implies that a magnetic force acts on neutrons, too. We consider purely poloidal field cases and present improvements to an earlier numerical scheme for solving equilibrium equations, by introducing new convergence criteria. We find that entrainment results in qualitative differences in the structure of field lines along the magnetic axis.

  12. Fast biomass pyrolysis with an entrained-flow reactor

    NASA Astrophysics Data System (ADS)

    Bohn, M. S.; Benham, C.

    1982-02-01

    A tubular entrained flow reactor has been used to study the effect of process control variables on fast biomass pyrolysis. In this type of reactor, finely ground biomass particles are entrained by carrier gas and transported through a reactor tube which is heated to about 900 C. Biomass particles pyrolyze as a result of heat transfer from the reactor wall yielding a gas composed primarily of carbon monoxide, carbon dioxide, hydrogen, methane, and unsaturated hydrocarbons. In this experimental program three dependent variables, percent conversion to gas, gas composition, and process heat, have been measured as a function of several process control variables. These process variables include reactor temperature, carrier gas to biomass flow ratio, reactor residence time, biomass particle size, and reactor Reynolds number. The data allow one to design and predict the performance of large scale reactors and also elucidates heat transfer mechanisms in fast biomass pyrolysis.

  13. Numerical Modeling of Deep Mantle Flow: Thermochemical Convection and Entrainment

    NASA Astrophysics Data System (ADS)

    Mulyukova, Elvira; Steinberger, Bernhard; Dabrowski, Marcin; Sobolev, Stephan

    2013-04-01

    One of the most robust results from tomographic studies is the existence of two antipodally located Large Low Shear Velocity Provinces (LLSVPs) at the base of the mantle, which appear to be chemically denser than the ambient mantle. Results from reconstruction studies (Torsvik et al., 2006) infer that the LLSVPs are stable, long-lived, and are sampled by deep mantle plumes that rise predominantly from their margins. The origin of the dense material is debated, but generally falls within three categories: (i) a primitive layer that formed during magma ocean crystallization, (ii) accumulation of a dense eclogitic component from the recycled oceanic crust, and (iii) outer core material leaking into the lower mantle. A dense layer underlying a less dense ambient mantle is gravitationally stable. However, the flow due to thermal density variations, i.e. hot rising plumes and cold downwelling slabs, may deform the layer into piles with higher topography. Further deformation may lead to entrainment of the dense layer, its mixing with the ambient material, and even complete homogenisation with the rest of the mantle. The amount of the anomalous LLSVP-material that gets entrained into the rising plumes poses a constraint on the survival time of the LLSVPs, as well as on the plume buoyancy, on the lithospheric uplift associated with plume interaction and geochemical signature of the erupted lavas observed at the Earth's surface. Recent estimates for the plume responsible for the formation of the Siberian Flood Basalts give about 15% of entrained dense recycled oceanic crust, which made the hot mantle plume almost neutrally buoyant (Sobolev et al., 2011). In this numerical study we investigate the mechanics of entrainment of a dense basal layer by convective mantle flow. We observe that the types of flow that promote entrainment of the dense layer are (i) upwelling of the dense layer when it gets heated enough to overcome its stabilizing chemical density anomaly, (ii

  14. Entrainment parameters in a cold superfluid neutron star core

    SciTech Connect

    Chamel, Nicolas; Haensel, Pawel

    2006-04-15

    Hydrodynamic simulations of neutron star cores that are based on a two-fluid description in terms of a neutron-proton superfluid mixture require the knowledge of the Andreev-Bashkin entrainment matrix which relates the momentum of one constituent to the currents of both constituents. This matrix is derived for arbitrary nuclear asymmetry at zero temperature and in the limits of small relative currents in the framework of the energy density functional theory. The Skyrme energy density functional is considered as a particular case. General analytic formulas for the entrainment parameters and various corresponding effective masses are obtained. These formulas are applied to the liquid core of a neutron star composed of homogeneous plasma of nucleons, electrons, and possibly muons in {beta} equilibrium.

  15. Synchrony and entrainment properties of robust circadian oscillators

    PubMed Central

    Bagheri, Neda; Taylor, Stephanie R.; Meeker, Kirsten; Petzold, Linda R.; Doyle, Francis J.

    2008-01-01

    Systems theoretic tools (i.e. mathematical modelling, control, and feedback design) advance the understanding of robust performance in complex biological networks. We highlight phase entrainment as a key performance measure used to investigate dynamics of a single deterministic circadian oscillator for the purpose of generating insight into the behaviour of a population of (synchronized) oscillators. More specifically, the analysis of phase characteristics may facilitate the identification of appropriate coupling mechanisms for the ensemble of noisy (stochastic) circadian clocks. Phase also serves as a critical control objective to correct mismatch between the biological clock and its environment. Thus, we introduce methods of investigating synchrony and entrainment in both stochastic and deterministic frameworks, and as a property of a single oscillator or population of coupled oscillators. PMID:18426774

  16. Updrafts, Downdrafts, Entrainment, and Detrainment in the Giga-LES

    NASA Astrophysics Data System (ADS)

    Krueger, S. K.; Glenn, I.

    2012-12-01

    We are investigating the properties of evolving three-dimensional updraft and downdraft "cores" in a model dataset from the Giga-LES, a large-domain LES (large-eddy simulation) of tropical oceanic deep convection (Khairoutdinov et al. 2009). We have also applied the analysis method developed by Kuang and Bretherton (2006) to investigate various aspects of the ensemble characteristics of cumulus convection in the Giga-LES. Our results agree with those of Kuang and Bretherton for the cumulus updraft properties. We have examined the relative merits of different entrainment and cloud-top-height assumptions in spectral plume models of cumulus updrafts, the characteristics of downdrafts, and the nature of a rapid transition from shallow to deep convection.isualization of cumulus clouds from the Giga-LES. The realistic structure is associated with entrainment.

  17. Entrainment and thrust augmentation in pulsatile ejector flows

    NASA Technical Reports Server (NTRS)

    Sarohia, V.; Bernal, L.; Bui, T.

    1981-01-01

    This study comprised direct thrust measurements, flow visualization by use of a spark shadowgraph technique, and mean and fluctuating velocity measurements with a pitot tube and linearized constant temperature hot-wire anemometry respectively. A gain in thrust of as much as 10 to 15% was observed for the pulsatile ejector flow as compared to the steady flow configuration. From the velocity profile measurements, it is concluded that this enhanced augmentation for pulsatile flow as compared to a nonpulsatile one was accomplished by a corresponding increased entrainment by the primary jet flow. It is also concluded that the augmentation and total entrainment by a constant area ejector critically depends upon the inlet geometry of the ejector. Experiments were performed to evaluate the influence of primary jet to ejector area ratio, ejector length, and presence of a diffuser on pulsatile ejector performance.

  18. Efficient moment-based inference of admixture parameters and sources of gene flow.

    PubMed

    Lipson, Mark; Loh, Po-Ru; Levin, Alex; Reich, David; Patterson, Nick; Berger, Bonnie

    2013-08-01

    The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still a challenge, however, to infer reliable parameter values for complicated models involving many populations. Here, we present MixMapper, an efficient, interactive method for constructing phylogenetic trees including admixture events using single nucleotide polymorphism (SNP) genotype data. MixMapper implements a novel two-phase approach to admixture inference using moment statistics, first building an unadmixed scaffold tree and then adding admixed populations by solving systems of equations that express allele frequency divergences in terms of mixture parameters. Importantly, all features of the model, including topology, sources of gene flow, branch lengths, and mixture proportions, are optimized automatically from the data and include estimates of statistical uncertainty. MixMapper also uses a new method to express branch lengths in easily interpretable drift units. We apply MixMapper to recently published data for Human Genome Diversity Cell Line Panel individuals genotyped on a SNP array designed especially for use in population genetics studies, obtaining confident results for 30 populations, 20 of them admixed. Notably, we confirm a signal of ancient admixture in European populations-including previously undetected admixture in Sardinians and Basques-involving a proportion of 20-40% ancient northern Eurasian ancestry. PMID:23709261

  19. Admixture of propofol and alfentanil. Use for intravenous sedation and analgesia during transvaginal oocyte retrieval.

    PubMed

    Sherry, E

    1992-06-01

    An admixture of propofol and alfentanil provides adequate sedation and analgesia during transvaginal oocyte retrieval in the absence of a paracervical block. In 100 patients the technique provided haemodynamic stability, sedation which was easily controlled, rapid recovery and universal patient acceptance. PMID:1616081

  20. What Causes Birth Order-Intelligence Patterns? The Admixture Hypothesis, Revived.

    ERIC Educational Resources Information Center

    Rodgers, Joseph Lee

    2001-01-01

    Describes why birth order interests both parents and researchers, discussing what really causes apparent birth order effects on intelligence, examining problems with using cross-sectional intelligence data, and noting how to move beyond cross-sectional inferences. Explains the admixture hypothesis, which finds that family size is much more…

  1. Chemical Stability of Admixtures Combining Ziconotide with Morphine or Hydromorphone During Simul ated Intrathecal Administration.

    PubMed

    Shields, David; Montenegro, Rick; Ragusa, Matthew

    2005-10-01

    Objective.  To determine the stability of admixtures combining ziconotide with morphine or hydromorphone under simulated intrathecal infusions. Materials and Methods.  Admixtures of ziconotide (25 µg/mL) with morphine or hydromorphone (both at 35 mg/mL) were stored in Medtronic SynchroMed® II pumps at 37°C, and in control vials at 37°C and 5°C. Drug concentrations were determined using high-performance liquid chromatography. Results.  The ziconotide pump concentration with morphine declined to 79% of initial in 17 days, and to 88% of initial after 25 days with hydromorphone. Ziconotide concentrations in control vials stored at 37°C displayed similar rates of decay, but vials stored at 5°C exhibited no ziconotide loss. A statistical evaluation of the two combinations shows ziconotide-hydromorphone retaining 80% stability for 40 days (extrapolated), compared to 15 days for ziconotide-morphine. Morphine and hydromorphone were stable in the presence of ziconotide under all conditions. Conclusions.  Ziconotide-hydromorphone admixtures were more stable than ziconotide-morphine admixtures. PMID:22151554

  2. Phenomenological model of sintering of oxide nuclear fuel with doping admixtures

    SciTech Connect

    Baranov, V. G.; Devyatko, Yu. N.; Tenishev, A. V.; Khomyakov, O. V.

    2015-12-15

    It is shown that a change in the linear dimension of compacted UO{sub 2} in the sintering process is associated with its plastic yielding under the action of the forces of residual stress and capillary forces. From the curves of sintering of a fuel with doping admixtures in various gaseous media, its rate of creep is reduced.

  3. Zinc content of commercial diluents widely used in drug admixtures prepared for intravenous infusion.

    PubMed

    Desai, Narendra R; Shah, Syed M; Koczone, Julianna; Vencl-Joncic, Maja; Sisto, Christopher; Ludwig, Stephen A

    2007-01-01

    During ongoing quality improvement efforts with two Wyeth parenteral products, Protonix and Zosyn, we noted that dosing solutions prepared from the products yielded inconsistent results on the United States Pharmacopeia Chapter 788 test for subvisible particulates. This manuscript discusses variables that have a direct impact on intravenous products meeting compendial monograph specifications under conditions that are encountered in the clinical setting. The rubber stoppers of vials used for parenteral products, different parts of commercial admixture bags, and the tubing of the administration sets and devices contain residual amounts of metal ions, plasticizers, and other additives incorparated for specific functions. The transition metal ions, including zinc and copper, may leach into drug products during manufacture and during storage of dosing admixture bags prepared for infusion in hospital pharmacies or clinics. The metal ions may compromise the quality of the infusion admixture through catalytic drug degradation and/or generation of undesirable metal ion complexes, which may convert soluble drug molecules into insoluble particulates. To preserve the quality of the drug product, it is essential that metal ion leachables be controlled proactively during manufacture of the drug product; knowledge of metal ion contents in the commercial diluents use for reconstitution, admixture preparation, and flushing of the administration lines is also critical. PMID:23969523

  4. Recycling of tailings from Korea Molybdenum Corporation as admixture for high-fluidity concrete.

    PubMed

    Jung, Moon Young; Choi, Yun Wang; Jeong, Jae Gwon

    2011-01-01

    The main objective of this study is to develop an eco-friendly and a large recycling technique of flotation Tailings from korea (TK) from metal mines as construction materials such as admixtures for high-fluidity concrete (HFC). TK used in this study was obtained from the Korea Molybdenum Corporation in operation. TK was used as the alternative material to adjust flowability and viscosity of HFC in the form of powder agent which enables adjustment of concrete compressive strength. In this study, we have performed concrete rheological tests and concrete flowability tests to obtain the quality characteristics of TK for using as the admixture in producing HFC. The results indicated that the adequate mix ratio of cement to TK should be 8:2 (vol%). It is more effective to use the TK as admixture to control flowability, viscosity and strength of HFC than the normal concrete. It was found that TK could be recycled construction materials in bulk such as admixture for HFC, in terms of the economic and eco-friendly aspects. PMID:21113645

  5. The scale and nature of Viking settlement in Ireland from Y-chromosome admixture analysis.

    PubMed

    McEvoy, Brian; Brady, Claire; Moore, Laoise T; Bradley, Daniel G

    2006-12-01

    The Vikings (or Norse) played a prominent role in Irish history but, despite this, their genetic legacy in Ireland, which may provide insights into the nature and scale of their immigration, is largely unexplored. Irish surnames, some of which are thought to have Norse roots, are paternally inherited in a similar manner to Y-chromosomes. The correspondence of Scandinavian patrilineal ancestry in a cohort of Irish men bearing surnames of putative Norse origin was examined using both slow mutating unique event polymorphisms and relatively rapidly changing short tandem repeat Y-chromosome markers. Irish and Scandinavian admixture proportions were explored for both systems using six different admixture estimators, allowing a parallel investigation of the impact of method and marker type in Y-chromosome admixture analysis. Admixture proportion estimates in the putative Norse surname group were highly consistent and detected little trace of Scandinavian ancestry. In addition, there is scant evidence of Scandinavian Y-chromosome introgression in a general Irish population sample. Although conclusions are largely dependent on the accurate identification of Norse surnames, the findings are consistent with a relatively small number of Norse settlers (and descendents) migrating to Ireland during the Viking period (ca. AD 800-1200) suggesting that Norse colonial settlements might have been largely composed of indigenous Irish. This observation adds to previous genetic studies that point to a flexible Viking settlement approach across North Atlantic Europe. PMID:16957681

  6. Rhythmic TMS Causes Local Entrainment of Natural Oscillatory Signatures

    PubMed Central

    Thut, Gregor; Veniero, Domenica; Romei, Vincenzo; Miniussi, Carlo; Schyns, Philippe; Gross, Joachim

    2011-01-01

    Summary Background Neuronal elements underlying perception, cognition, and action exhibit distinct oscillatory phenomena, measured in humans by electro- or magnetoencephalography (EEG/MEG). So far, the correlative or causal nature of the link between brain oscillations and functions has remained elusive. A compelling demonstration of causality would primarily generate oscillatory signatures that are known to correlate with particular cognitive functions and then assess the behavioral consequences. Here, we provide the first direct evidence for causal entrainment of brain oscillations by transcranial magnetic stimulation (TMS) using concurrent EEG. Results We used rhythmic TMS bursts to directly interact with an MEG-identified parietal α-oscillator, activated by attention and linked to perception. With TMS bursts tuned to its preferred α-frequency (α-TMS), we confirmed the three main predictions of entrainment of a natural oscillator: (1) that α-oscillations are induced during α-TMS (reproducing an oscillatory signature of the stimulated parietal cortex), (2) that there is progressive enhancement of this α-activity (synchronizing the targeted, α-generator to the α-TMS train), and (3) that this depends on the pre-TMS phase of the background α-rhythm (entrainment of natural, ongoing α-oscillations). Control conditions testing different TMS burst profiles and TMS-EEG in a phantom head confirmed specificity of α-boosting to the case of synchronization between TMS train and neural oscillator. Conclusions The periodic electromagnetic force that is generated during rhythmic TMS can cause local entrainment of natural brain oscillations, emulating oscillatory signatures activated by cognitive tasks. This reveals a new mechanism of online TMS action on brain activity and can account for frequency-specific behavioral TMS effects at the level of biologically relevant rhythms. PMID:21723129

  7. Neural entrainment to the rhythmic structure of music.

    PubMed

    Tierney, Adam; Kraus, Nina

    2015-02-01

    The neural resonance theory of musical meter explains musical beat tracking as the result of entrainment of neural oscillations to the beat frequency and its higher harmonics. This theory has gained empirical support from experiments using simple, abstract stimuli. However, to date there has been no empirical evidence for a role of neural entrainment in the perception of the beat of ecologically valid music. Here we presented participants with a single pop song with a superimposed bassoon sound. This stimulus was either lined up with the beat of the music or shifted away from the beat by 25% of the average interbeat interval. Both conditions elicited a neural response at the beat frequency. However, although the on-the-beat condition elicited a clear response at the first harmonic of the beat, this frequency was absent in the neural response to the off-the-beat condition. These results support a role for neural entrainment in tracking the metrical structure of real music and show that neural meter tracking can be disrupted by the presentation of contradictory rhythmic cues. PMID:25170794

  8. Entrainment of respiratory frequency to exercise rhythm during hypoxia.

    PubMed

    Paterson, D J; Wood, G A; Marshall, R N; Morton, A R; Harrison, A B

    1987-05-01

    Breathing frequency (f) is often reported as having an integer-multiple relationship to limb movement (entrainment) during rhythmic exercise. To investigate the strength of this coupling while running under hypoxic conditions, two male Caucasians and four male Nepalese porters were tested in the Annapurna region of the Himalayas at altitudes of 915, 2,135, 3,200, 4,420, and 5,030 m. In an additional study in a laboratory at sea level, three male and four female subjects inspired various O2-N2 mixtures [fraction of inspired O2 (FIO2) = 20.93, 17.39, 14.40, 11.81%] that were administered in a single-blind randomized fashion during a treadmill run (40% FIO2 maximum O2 consumption). Breathing and gait signals were stored on FM tape and later processed on a PDP 11/73 computer. The subharmonic relationships between these signals were determined from Fourier analysis (power spectrum), and the coincidence of coupling occurrence was statistically modeled. Entrainment decreased linearly during increasing hypoxia (P less than 0.01). Moreover, a significant linear increase in f occurred during hypoxia (P less than 0.05), whereas stride frequency and metabolic rate remained constant, suggesting that hypoxic-induced increases in f decreased the degree of entrainment. PMID:3597249

  9. Rhythm as a Coordinating Device: Entrainment With Disordered Speech

    PubMed Central

    Borrie, Stephanie A.; Liss, Julie M.

    2014-01-01

    Purpose The rhythmic entrainment (coordination) of behavior during human interaction is a powerful phenomenon, considered essential for successful communication, supporting social and emotional connection, and facilitating sense-making and information exchange. Disruption in entrainment likely occurs in conversations involving those with speech and language impairment, but its contribution to communication disorders has not been defined. As a first step to exploring this phenomenon in clinical populations, the present investigation examined the influence of disordered speech on the speech production properties of healthy interactants. Method Twenty-nine neurologically healthy interactants participated in a quasi-conversational paradigm, in which they read sentences (response) in response to hearing prerecorded sentences (exposure) from speakers with dysarthria (n = 4) and healthy controls (n = 4). Recordings of read sentences prior to the task were also collected (habitual). Results Findings revealed that interactants modified their speaking rate and pitch variation to align more closely with the disordered speech. Production shifts in these rhythmic properties, however, remained significantly different from corresponding properties in dysarthric speech. Conclusion Entrainment offers a new avenue for exploring speech and language impairment, addressing a communication process not currently explained by existing frameworks. This article offers direction for advancing this line of inquiry. PMID:24686410

  10. microRNA modulation of circadian clock period and entrainment

    PubMed Central

    Cheng, Hai-Ying M.; Papp, Joseph W.; Varlamova, Olga; Dziema, Heather; Russell, Brandon; Curfman, John P.; Nakazawa, Takanobu; Shimizu, Kimiko; Okamura, Hitoshi; Impey, Soren; Obrietan, Karl

    2007-01-01

    microRNAs (miRNAs) are a class of small, non-coding, RNAs that regulate the stability or translation of mRNA transcripts. Although recent work has implicated miRNAs in development and in disease, the expression and function of miRNAs in the adult mammalian nervous system has not been extensively characterized. Here, we examine the role of two brain-specific miRNAs, miR-219 and miR-132, in modulating the circadian clock located in the suprachiasmatic nucleus. miR-219 is a target of the CLOCK/BMAL1 complex, exhibits robust circadian rhythms of expression and the in vivo knockdown of miR-219 lengthens the circadian period. miR-132 is induced by photic entrainment cues via a MAPK/CREB-dependent mechanism, modulates clock gene expression, and attenuates the entraining effects of light. Collectively, these data reveal miRNAs as clock- and light-regulated genes and provide a mechanistic examination of their roles as effectors of pacemaker activity and entrainment. PMID:17553428

  11. Robust Entrainment of Circadian Oscillators Requires Specific Phase Response Curves

    PubMed Central

    Pfeuty, Benjamin; Thommen, Quentin; Lefranc, Marc

    2011-01-01

    The circadian clocks keeping time in many living organisms rely on self-sustained biochemical oscillations entrained by external cues, such as light, to the 24-h cycle induced by Earth's rotation. However, environmental cues are unreliable due to the variability of habitats, weather conditions, or cue-sensing mechanisms among individuals. A tempting hypothesis is that circadian clocks have evolved so as to be robust to fluctuations in the signal that entrains them. To support this hypothesis, we analyze the synchronization behavior of weakly and periodically forced oscillators in terms of their phase response curve (PRC), which measures phase changes induced by a perturbation applied at different times of the cycle. We establish a general relationship between the robustness of key entrainment properties, such as stability and oscillator phase, on the one hand, and the shape of the PRC as characterized by a specific curvature or the existence of a dead zone, on the other hand. The criteria obtained are applied to computational models of circadian clocks and account for the disparate robustness properties of various forcing schemes. Finally, the analysis of PRCs measured experimentally in several organisms strongly suggests a case of convergent evolution toward an optimal strategy for maintaining a clock that is accurate and robust to environmental fluctuations. PMID:21641300

  12. Entrainment of coarse grains using a discrete particle model

    SciTech Connect

    Valyrakis, Manousos; Arnold, Roger B. Jr.

    2014-10-06

    Conventional bedload transport models and incipient motion theories relying on a time-averaged boundary shear stress are incapable of accounting for the effects of fluctuating near-bed velocity in turbulent flow and are therefore prone to significant errors. Impulse, the product of an instantaneous force magnitude and its duration, has been recently proposed as an appropriate criterion for quantifying the effects of flow turbulence in removing coarse grains from the bed surface. Here, a discrete particle model (DPM) is used to examine the effects of impulse, representing a single idealized turbulent event, on particle entrainment. The results are classified according to the degree of grain movement into the following categories: motion prior to entrainment, initial dislodgement, and energetic displacement. The results indicate that in all three cases the degree of particle motion depends on both the force magnitude and the duration of its application and suggest that the effects of turbulence must be adequately accounted for in order to develop a more accurate method of determining incipient motion. DPM is capable of simulating the dynamics of grain entrainment and is an appropriate tool for further study of the fundamental mechanisms of sediment transport.

  13. Velocity response curves demonstrate the complexity of modeling entrainable clocks.

    PubMed

    Taylor, Stephanie R; Cheever, Allyson; Harmon, Sarah M

    2014-12-21

    Circadian clocks are biological oscillators that regulate daily behaviors in organisms across the kingdoms of life. Their rhythms are generated by complex systems, generally involving interlocked regulatory feedback loops. These rhythms are entrained by the daily light/dark cycle, ensuring that the internal clock time is coordinated with the environment. Mathematical models play an important role in understanding how the components work together to function as a clock which can be entrained by light. For a clock to entrain, it must be possible for it to be sped up or slowed down at appropriate times. To understand how biophysical processes affect the speed of the clock, one can compute velocity response curves (VRCs). Here, in a case study involving the fruit fly clock, we demonstrate that VRC analysis provides insight into a clock׳s response to light. We also show that biochemical mechanisms and parameters together determine a model׳s ability to respond realistically to light. The implication is that, if one is developing a model and its current form has an unrealistic response to light, then one must reexamine one׳s model structure, because searching for better parameter values is unlikely to lead to a realistic response to light. PMID:25193284

  14. Presence of strong harmonics during visual entrainment: a magnetoencephalography study.

    PubMed

    Heinrichs-Graham, Elizabeth; Wilson, Tony W

    2012-09-01

    Visual neurons are known to synchronize their firing with stimuli that flicker at a constant rate (e.g. 12Hz). These so-called visual steady-state responses (VSSR) are a well-studied phenomenon, yet the underlying mechanisms are widely disagreed upon. Furthermore, there is limited evidence that visual neurons may simultaneously synchronize at harmonics of the stimulation frequency. We utilized magnetoencephalography (MEG) to examine synchronization at harmonics of the visual stimulation frequency (18Hz). MEG data were analyzed for event-related-synchronization (ERS) at the fundamental frequency, 36, 54, and 72Hz. We found strong ERS in all bands. Only 31% of participants showed maximum entrainment at the fundamental; others showed stronger entrainment at either 36 or 54Hz. The cortical foci of these responses indicated that the harmonics involved cortices that were partially distinct from the fundamental. These findings suggest that spatially-overlapping subpopulations of neurons are simultaneously entrained at different harmonics of the stimulus frequency. PMID:22569101

  15. Further characterization of theobroma oil-beeswax admixtures as lipid matrices for improved drug delivery systems.

    PubMed

    Attama, A A; Schicke, B C; Müller-Goymann, C C

    2006-11-01

    There is an increasing interest in lipid based drug delivery systems due to factors such as better characterization of lipidic excipients and formulation versatility and the choice of different drug delivery systems. It is important to know the thermal characteristics, crystal habit, texture, and appearance of a new lipid matrix when determining its suitability for use in certain pharmaceutical application. It is line with this that this research was embarked upon to characterize mixtures of beeswax and theobroma oil with a view to applying their admixtures in drug delivery systems such as solid lipid nanoparticles and nanostructured lipid carriers. Admixtures of theobroma oil and beeswax were prepared to contain 25% w/w, 50% w/w, and 75% w/w of theobroma oil. The admixtures were analyzed by differential scanning calorimetry (DSC), small angle X-ray diffraction (SAXD), wide angle X-ray diffraction (WAXD), and isothermal heat conduction microcalorimetry (IMC). The melting behavior and microstructures of the lipid admixtures were monitored by polarized light microscopy (PLM). Transmission electron microscopy (TEM) was used to study the internal structures of the lipid bases. DSC traces indicated that the higher melting peaks were roughly constant for the different admixtures, but lower melting peaks significantly increased (p < 0.05). The admixture containing 25% w/w of theobroma oil possessed highest crystallinity index of 95.6%. WAXD studies indicated different reflections for the different lipid matrices. However, new interferences were detected for all the lipid matrix admixtures between 2theta = 22.0 degrees and 2theta = 25.0 degrees. The lipid matrices containing 50% w/w and 25% w/w of theobroma oil showed absence of the weak reflection characteristic of pure theobroma oil, while there was disappearance of the strong intensity reflection of beeswax in all the lipid matrix admixtures at all stages of the study. PLM micrographs revealed differences with regard to

  16. African Ancestry Analysis and Admixture Genetic Mapping for Proliferative Diabetic Retinopathy in African Americans

    PubMed Central

    Tandon, Arti; Chen, Ching J.; Penman, Alan; Hancock, Heather; James, Maurice; Husain, Deeba; Andreoli, Christopher; Li, Xiaohui; Kuo, Jane Z.; Idowu, Omolola; Riche, Daniel; Papavasilieou, Evangelia; Brauner, Stacey; Smith, Sataria O.; Hoadley, Suzanne; Richardson, Cole; Kieser, Troy; Vazquez, Vanessa; Chi, Cheryl; Fernandez, Marlene; Harden, Maegan; Cotch, Mary Frances; Siscovick, David; Taylor, Herman A.; Wilson, James G.; Reich, David; Wong, Tien Y.; Klein, Ronald; Klein, Barbara E. K.; Rotter, Jerome I.; Patterson, Nick; Sobrin, Lucia

    2015-01-01

    Purpose. To examine the relationship between proportion of African ancestry (PAA) and proliferative diabetic retinopathy (PDR) and to identify genetic loci associated with PDR using admixture mapping in African Americans with type 2 diabetes (T2D). Methods. Between 1993 and 2013, 1440 participants enrolled in four different studies had fundus photographs graded using the Early Treatment Diabetic Retinopathy Study scale. Cases (n = 305) had PDR while controls (n = 1135) had nonproliferative diabetic retinopathy (DR) or no DR. Covariates included diabetes duration, hemoglobin A1C, systolic blood pressure, income, and education. Genotyping was performed on the Affymetrix platform. The association between PAA and PDR was evaluated using logistic regression. Genome-wide admixture scanning was performed using ANCESTRYMAP software. Results. In the univariate analysis, PDR was associated with increased PAA (odds ratio [OR] = 1.36, 95% confidence interval [CI] = 1.16–1.59, P = 0.0002). In multivariate regression adjusting for traditional DR risk factors, income and education, the association between PAA and PDR was attenuated and no longer significant (OR = 1.21, 95% CI = 0.59–2.47, P = 0.61). For the admixture analyses, the maximum genome-wide score was 1.44 on chromosome 1. Conclusions. In this largest study of PDR in African Americans with T2D to date, an association between PAA and PDR is not present after adjustment for clinical, demographic, and socioeconomic factors. No genome-wide significant locus (defined as having a locus-genome statistic > 5) was identified with admixture analysis. Further analyses with even larger sample sizes are needed to definitively assess if any admixture signal for DR is present. PMID:26098467

  17. Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World

    PubMed Central

    2012-01-01

    Background Populations of the Americas were founded by early migrants from Asia, and some have experienced recent genetic admixture. To better characterize the native and non-native ancestry components in populations from the Americas, we analyzed 815,377 autosomal SNPs, mitochondrial hypervariable segments I and II, and 36 Y-chromosome STRs from 24 Mesoamerican Totonacs and 23 South American Bolivians. Results and Conclusions We analyzed common genomic regions from native Bolivian and Totonac populations to identify 324 highly predictive Native American ancestry informative markers (AIMs). As few as 40–50 of these AIMs perform nearly as well as large panels of random genome-wide SNPs for predicting and estimating Native American ancestry and admixture levels. These AIMs have greater New World vs. Old World specificity than previous AIMs sets. We identify highly-divergent New World SNPs that coincide with high-frequency haplotypes found at similar frequencies in all populations examined, including the HGDP Pima, Maya, Colombian, Karitiana, and Surui American populations. Some of these regions are potential candidates for positive selection. European admixture in the Bolivian sample is approximately 12%, though individual estimates range from 0–48%. We estimate that the admixture occurred ~360–384 years ago. Little evidence of European or African admixture was found in Totonac individuals. Bolivians with pre-Columbian mtDNA and Y-chromosome haplogroups had 5–30% autosomal European ancestry, demonstrating the limitations of Y-chromosome and mtDNA haplogroups and the need for autosomal ancestry informative markers for assessing ancestry in admixed populations. PMID:22606979

  18. The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape.

    PubMed

    Busby, George B J; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J; Wilson, James F; Myers, Simon; Capelli, Cristian

    2015-10-01

    Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1-7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8-11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia. PMID:26387712

  19. Phenotypic evolution of human craniofacial morphology after admixture: a geometric morphometrics approach.

    PubMed

    Martínez-Abadías, Neus; González-José, Rolando; González-Martín, Antonio; Van der Molen, Silvina; Talavera, Arturo; Hernández, Patricia; Hernández, Miquel

    2006-03-01

    An evolutionary, diachronic approach to the phenotypic craniofacial pattern arisen in a human population after high levels of admixture and gene flow was achieved by means of geometric morphometrics. Admixture has long been studied after molecular data. Nevertheless, few efforts have been made to explain the morphological outcome in human craniofacial samples. The Spanish-Amerindian contact can be considered a good scenario for such an analysis. Here we present a comparative analysis of craniofacial shape changes observed between two putative ancestor groups, Spanish and precontact Aztecs, and two diachronic admixed groups, corresponding to early and late colonial periods from the Mexico's Central Valley. Quantitative shape comparisons of Amerindian, Spanish, and admixed groups were used to test the expectations of quantitative genetics for admixture events. In its simplest form, this prediction states that an admixed group will present phenotypic values falling between those of both parental groups. Results show that, in general terms, although the human skull is a complex, integrated structure, the craniofacial morphology observed fits the theoretical expectations of quantitative genetics. Thus, it is predictive of population structure and history. In fact, results obtained after the craniofacial analysis are in accordance with previous molecular and historical interpretations, providing evidence that admixture is a main microevolutionary agent influencing modern Mexican gene pool. However, expectations are not straightforward when moderate shape changes are considered. Deviations detected at localized structures, such as the upper and lower face, highlight the evolution of a craniofacial pattern exclusively inherent to the admixed groups, indicating that quantitative characters might respond to admixture in a complicated, nondirectional way. PMID:16323202

  20. The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape

    PubMed Central

    Busby, George B.J.; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J.; Wilson, James F.; Myers, Simon; Capelli, Cristian

    2015-01-01

    Summary Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1, 2, 3, 4, 5, 6, 7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8, 9, 10, 11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia. PMID:26387712

  1. Analysis of Genomic Admixture in Uyghur and Its Implication in Mapping Strategy

    PubMed Central

    Xu, Shuhua; Huang, Wei; Qian, Ji; Jin, Li

    2008-01-01

    The Uyghur (UIG) population, settled in Xinjiang, China, is a population presenting a typical admixture of Eastern and Western anthropometric traits. We dissected its genomic structure at population level, individual level, and chromosome level by using 20,177 SNPs spanning nearly the entire chromosome 21. Our results showed that UIG was formed by two-way admixture, with 60% European ancestry and 40% East Asian ancestry. Overall linkage disequilibrium (LD) in UIG was similar to that in its parental populations represented in East Asia and Europe with regard to common alleles, and UIG manifested elevation of LD only within 500 kb and at a level of 0.1 < r2 < 0.8 when ancestry-informative markers (AIMs) were used. The size of chromosomal segments that were derived from East Asian and European ancestries averaged 2.4 cM and 4.1 cM, respectively. Both the magnitude of LD and fragmentary ancestral chromosome segments indicated a long history of Uyghur. Under the assumption of a hybrid isolation (HI) model, we estimated that the admixture event of UIG occurred about 126 [107∼146] generations ago, or 2520 [2140∼2920] years ago assuming 20 years per generation. In spite of the long history and short LD of Uyghur compared with recent admixture populations such as the African-American population, we suggest that mapping by admixture LD (MALD) is still applicable in the Uyghur population but ∼10-fold AIMs are necessary for a whole-genome scan. PMID:18355773

  2. Entrainment of granular substrate by pyroclastic flows: an experimental study and its implications for flow dynamics

    NASA Astrophysics Data System (ADS)

    Roche, O.; Niño, Y.; Mangeney, A.; Brand, B. D.; Valentine, G. A.

    2012-12-01

    Pyroclastic flows deposits may contain lithics entrained from an unconsolidated granular substrate on which the flows emplaced. In order to address this issue, analog experiments on dense gas-particle flows propagating on a horizontal granular layer were carried out to elucidate the entrainment mechanisms and to infer the dynamics of pyroclastic flows. The experimental flows were generated from the release of gas-fluidized columns of fine (80 μm) particles in a horizontal channel whose base was made of an unconsolidated granular layer. The flows consisted of a fluidized air-particles mixture, and the small hydraulic permeability of the material allowed for long-lived high interstitial pore fluid pressure during emplacement. Basal pore pressure measurements in preliminary experiments involving a rigid substrate revealed that the sliding head of the flows generated a dynamic underpressure (relative to atmosphere) proportional to the square of the front velocity. As such underpressure at the flow base was likely to promote an upward pressure gradient that could cause uplift of particles of a granular substrate, we did a theoretical analysis in order to determine the critical underpressure and the corresponding flow velocity (Uc) at which uplift could occur. This analysis showed that Uc~(dρpg/Cρ)1/2 for spherical particles, where d and ρp are the particle diameter and density, respectively, C is an empirical constant, and is ρ is the bulk flow density. It was validated with experiments on flows propagating on 3 cm-thick substrates of steel beads of diameter d=1.6 mm. The beads were first dragged horizontally individually due to basal shear, and onset of uplift did occur at Uc~0.9 m/s. The beads uplifted were incorporated within the flow base, to a height that increased up to 6-8 mm at flow velocities up to 2.5-3 m/s, and were entrained over distances of several tens of cm representing a significant part of the flow runout. The flow deposits hence had a well

  3. Flow Transformation in Pyroclastic Density Currents: Entrainment and Granular Dynamics during the 2006 eruption of Tungurahua

    NASA Astrophysics Data System (ADS)

    Dufek, J.; Benage, M. C.; Geist, D.; Harpp, K. S.

    2013-12-01

    have conducted high resolution simulations in concert with detailed measurements of these flows from both up flow and down flow from the transformation to document the process of dense to dilute flow transition. The field characterization includes mapping of the flows, grain size analysis, documenting flow direction indicators, comminution rounding, thermal proxies for air entrainment, and bed form documentation. We used a three-dimensional, multiphase (Eulerian-Eulerian-Lagrangian, EEL) modeling approach to describe size sorting, concentration gradients, and stresses in these evolving flows using the topography of the near Chambo River crossing (Dufek and Bergantz, 2007a; Dufek and Bertgantz, 2007b). The numerical models reveal extensive entrainment in the surge-generating phase of the flow, and secondary plume generation as fine ash in transported by hot gases higher into the atmosphere. Granular waves develop in the confined channels of the dense flow resulting bed shear stress perturbations. These granular instabilities and entrainment result in pulsing conditions in the surge, accounting for much of the unsteady behavior that results in fluctuations in grain size and bed form in the surge deposits.

  4. Method of making an air electrode material having controlled sinterability

    DOEpatents

    Vasilow, Theodore R.; Kuo, Lewis J. H.; Ruka, Roswell J.

    1994-01-01

    A tubular, porous ceramic electrode structure (3) is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte (4), substantially surrounds the air electrode, and a porous outer fuel electrode (7) substantially surrounds the electrolyte, to form a fuel cell (1).

  5. Method of making an air electrode material having controlled sinterability

    DOEpatents

    Vasilow, T.R.; Kuo, L.J.H.; Ruka, R.J.

    1994-08-30

    A tubular, porous ceramic electrode structure is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte, substantially surrounds the air electrode, and a porous outer fuel electrode substantially surrounds the electrolyte, to form a fuel cell. 2 figs.

  6. Understanding admixture patterns in supplemented populations: a case study combining molecular analyses and temporally explicit simulations in Atlantic salmon

    PubMed Central

    Perrier, Charles; Baglinière, Jean-Luc; Evanno, Guillaume

    2013-01-01

    Genetic admixture between wild and introduced populations is a rising concern for the management of endangered species. Here, we use a dual approach based on molecular analyses of samples collected before and after hatchery fish introduction in combination with a simulation study to obtain insight into the mechanisms of admixture in wild populations. Using 17 microsatellites, we genotyped pre- and post-stocking samples from four Atlantic salmon populations supplemented with non-native fish to estimate genetic admixture. We also used individual-based temporally explicit simulations based on realistic demographic and stocking data to predict the extent of admixture. We found a low admixture by hatchery stocks within prestocking samples but moderate to high values in post-stocking samples (from 12% to 60%). The simulation scenarios best fitting the real data suggested a 10–25 times lower survival of stocked fish relative to wild individuals. Simulations also suggested relatively high dispersal rates of stocked and wild fish, which may explain some high levels of admixture in weakly stocked populations and the persistence of indigenous genotypes in heavily stocked populations. This study overall demonstrates that combining genetic analyses with simulations can significantly improve the understanding of admixture mechanisms in wild populations. PMID:23798972

  7. The relationship between European genetic admixture and body composition among Hispanics and Native Americans.

    PubMed

    Klimentidis, Y C; Miller, G F; Shriver, M D

    2009-01-01

    Previous studies have shown a relationship between health-related phenotypes and the degree of African, European, or Native American genetic admixture, indicating that there may be a genetic component to these phenotypes. However, these relationships may be driven to a large extent by the environmental differences that co-vary with admixture differences between and within groups. In this study, we examine the relationship between genetic admixture and two phenotypic measurements that are potentially related to health: body mass index (BMI) and percent body fat (PBF). In addition to admixture proportions, we attempt to assess the influence of some environmental covariates by examining how the phenotypes vary with self-reported household income, education of parents, and physical activity level. Genetic, anthropometric, and environmental data were collected from 170 self-reported Hispanic and Native American university students in Albuquerque, NM. We examine the relationships between genetic admixture, phenotype, and environment in both the full sample, as well as in Hispanics and Native Americans separately. Among Hispanics, we find no significant relationship between genetic admixture and body composition. Among Native Americans, despite a small sample size, we find a statistically significant, negative relationship between European genetic admixture and PBF and BMI, after adjusting for other predictor variables. We compare our findings to previous research, and discuss their implications for understanding health disparities within and between ethnic groups. PMID:19214998

  8. Audience entrainment during live contemporary dance performance: physiological and cognitive measures.

    PubMed

    Bachrach, Asaf; Fontbonne, Yann; Joufflineau, Coline; Ulloa, José Luis

    2015-01-01

    Perceiving and synchronizing to a piece of dance is a remarkable skill in humans. Research in this area is very recent and has been focused mainly on entrainment produced by regular rhythms. Here, we investigated entrainment effects on spectators perceiving a non-rhythmic and extremely slow performance issued from contemporary dance. More specifically, we studied the relationship between subjective experience and entrainment produced by perceiving this type of performance. We defined two types of entrainment. Physiological entrainment corresponded to cardiovascular and respiratory coordinated activities. Cognitive entrainment was evaluated through cognitive tasks that quantified time distortion. These effects were thought to reflect attunement of a participant' internal temporal clock to the particularly slow pace of the danced movement. Each participant' subjective experience-in the form of responses to questionnaires-were collected and correlated with cognitive and physiological entrainment. We observe: (a) a positive relationship between psychological entrainment and attention to breathing (their own one or that of dancers); and (b) a positive relationship between cognitive entrainment (reflected as an under-estimation of time following the performance) and attention to their own breathing, and attention to the muscles' dancers. Overall, our results suggest a close relationship between attention to breathing and entrainment. This proof-of-concept pilot study was intended to prove the feasibility of a quantitative situated paradigm. This research is inscribed in a large-scale interdisciplinary project of dance spectating (labodanse.org). PMID:25999831

  9. Audience entrainment during live contemporary dance performance: physiological and cognitive measures

    PubMed Central

    Bachrach, Asaf; Fontbonne, Yann; Joufflineau, Coline; Ulloa, José Luis

    2015-01-01

    Perceiving and synchronizing to a piece of dance is a remarkable skill in humans. Research in this area is very recent and has been focused mainly on entrainment produced by regular rhythms. Here, we investigated entrainment effects on spectators perceiving a non-rhythmic and extremely slow performance issued from contemporary dance. More specifically, we studied the relationship between subjective experience and entrainment produced by perceiving this type of performance. We defined two types of entrainment. Physiological entrainment corresponded to cardiovascular and respiratory coordinated activities. Cognitive entrainment was evaluated through cognitive tasks that quantified time distortion. These effects were thought to reflect attunement of a participant’ internal temporal clock to the particularly slow pace of the danced movement. Each participant’ subjective experience—in the form of responses to questionnaires—were collected and correlated with cognitive and physiological entrainment. We observe: (a) a positive relationship between psychological entrainment and attention to breathing (their own one or that of dancers); and (b) a positive relationship between cognitive entrainment (reflected as an under-estimation of time following the performance) and attention to their own breathing, and attention to the muscles’ dancers. Overall, our results suggest a close relationship between attention to breathing and entrainment. This proof-of-concept pilot study was intended to prove the feasibility of a quantitative situated paradigm. This research is inscribed in a large-scale interdisciplinary project of dance spectating (labodanse.org). PMID:25999831

  10. Doing Duo - a case study of entrainment in William Forsythe's choreography "Duo".

    PubMed

    Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E

    2014-01-01

    Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe's choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models. PMID:25374522

  11. Acute management of vascular air embolism

    PubMed Central

    Shaikh, Nissar; Ummunisa, Firdous

    2009-01-01

    Vascular air embolism (VAE) is known since early nineteenth century. It is the entrainment of air or gas from operative field or other communications into the venous or arterial vasculature. Exact incidence of VAE is difficult to estimate. High risk surgeries for VAE are sitting position and posterior fossa neurosurgeries, cesarean section, laparoscopic, orthopedic, surgeries invasive procedures, pulmonary overpressure syndrome, and decompression syndrome. Risk factors for VAE are operative site 5 cm above the heart, creation of pressure gradient which will facilitate entry of air into the circulation, orogenital sex during pregnancy, rapid ascent in scuba (self contained underwater breathing apparatus) divers and barotrauma or chest trauma. Large bolus of air can lead to right ventricular air lock and immediate fatality. In up to 35% patient, the foramen ovale is patent which can cause paradoxical arterial air embolism. VAE affects cardiovascular, pulmonary and central nervous system. High index of clinical suspicion is must to diagnose VAE. The transesophgeal echocardiography is the most sensitive device which will detect smallest amount of air in the circulation. Treatment of VAE is to prevent further entrainment of air, reduce the volume of air entrained and haemodynamic support. Mortality of VAE ranges from 48 to 80%. VAE can be prevented significantly by proper positioning during surgery, optimal hydration, avoiding use of nitrous oxide, meticulous care during insertion, removal of central venous catheter, proper guidance, and training of scuba divers. PMID:20009308

  12. Acute management of vascular air embolism.

    PubMed

    Shaikh, Nissar; Ummunisa, Firdous

    2009-09-01

    Vascular air embolism (VAE) is known since early nineteenth century. It is the entrainment of air or gas from operative field or other communications into the venous or arterial vasculature. Exact incidence of VAE is difficult to estimate. High risk surgeries for VAE are sitting position and posterior fossa neurosurgeries, cesarean section, laparoscopic, orthopedic, surgeries invasive procedures, pulmonary overpressure syndrome, and decompression syndrome. Risk factors for VAE are operative site 5 cm above the heart, creation of pressure gradient which will facilitate entry of air into the circulation, orogenital sex during pregnancy, rapid ascent in scuba (self contained underwater breathing apparatus) divers and barotrauma or chest trauma. Large bolus of air can lead to right ventricular air lock and immediate fatality. In up to 35% patient, the foramen ovale is patent which can cause paradoxical arterial air embolism. VAE affects cardiovascular, pulmonary and central nervous system. High index of clinical suspicion is must to diagnose VAE. The transesophgeal echocardiography is the most sensitive device which will detect smallest amount of air in the circulation. Treatment of VAE is to prevent further entrainment of air, reduce the volume of air entrained and haemodynamic support. Mortality of VAE ranges from 48 to 80%. VAE can be prevented significantly by proper positioning during surgery, optimal hydration, avoiding use of nitrous oxide, meticulous care during insertion, removal of central venous catheter, proper guidance, and training of scuba divers. PMID:20009308

  13. Comprehensive modeling and numerical investigation of entrained-flow coal gasifiers

    NASA Astrophysics Data System (ADS)

    Silaen, Armin Karen

    Numerical simulations of coal gasification process inside a generic 2-stage entrained-flow gasifier are carried out using the commercial CFD solver ANSYS/FLUENT. The 3-D Navier-Stokes equations and eight species transport equations are solved with three heterogeneous global reactions, three homogeneous reactions, and one thermal cracking equation of volatiles. Finite rates are used for the heterogeneous solid-gas reactions. Both finite rate and eddy-breakup combustion models are calculated for each homogeneous gas-gas reaction, and the smaller of the two rates is used. Lagrangian-Eulerian method is employed. The Eulerian method calculates the continuous phase while the Lagrangian method tracks each coal particle. Fundamental study is carried out to investigate effects of five turbulence models (standard k-epsilon, k-o, RSM, k-o SST, and k-epsilon RNG) and four devolatilization models (Kobayashi, single rate, constant rate, and CPD) on gasification simulation. A study is also conducted to investigate the effects of different operation parameters on gasification process including coal mixture (dry vs. slurry), oxidant (oxygen-blown vs. air-blown), and different coal distributions between two stages. Finite-rate model and instantaneous gasification model are compared. It is revealed that the instantaneous gasification approach can provide an overall evaluation of relative changes of gasifier performance in terms of temperature, heating value, and gasification efficiency corresponding to parametric variations, but not adequately capture the local gasification process predicted by the finite rate model in most part of the gasifier. Simulations are performed to help with design modifications of a small industrial demonstration entrained-flow gasifier. It is discovered that the benefit of opening the slag tap on the quench-type gasifier wider by allowing slag to move successfully without clogging is compromised by increased heat losses, reduced gasification performance

  14. An experimental investigation of flow patterns and liquid entrainment in a horizontal-tube evaporator

    NASA Astrophysics Data System (ADS)

    Barnhart, John Steven

    An experimental study of two-phase flow patterns and droplet entrainment in a horizontal-tube evaporator was conducted. Measurements were made with serpentine aluminum and glass evaporators with geometries typical of those used for domestic refrigeration. The refrigerant in the majority of tests was R134a, which will replace R12 for refrigeration and automotive air-conditioning in 1995. The phenomenon of primary interest was the nonequilibrium transport of droplets within superheated vapor at the evaporator exit. Of particular concern were substantial variations in the liquid rate with time, and corresponding fluctuations in exit temperature. These variations are due to the formation of slugs which rapidly transport a surplus of liquid toward the exit. A flow loop was constructed to circulate oil-free refrigerant through the evaporator under widely varying conditions. Liquid carry over (expressed as a dimensionless entrained mass fraction, EMF) was measured as a function of inlet quality, heat flux, mass flux, and exit superheat. A laser-based phase/Doppler particle analyzer was used to measure droplet diameters and velocities at the evaporator exit. Tests with three refrigerants over wide ranges of operating conditions revealed time-averaged EMF's of no more than 0.1 percent. Analysis of variance showed exit superheat to have the strongest effect, followed by mass flux, inlet quality, and heat flux. Time-averaged EMF's varied with operating conditions by several orders of magnitude, decreasing with increasing superheat level (due to lower entrainment rates near the exit and more rapid droplet vaporization) and mass flux and inlet quality (due to reduced slug formation). The incidence of slug flow and its effect on evaporator exit conditions were documented in time-resolved experiments, using techniques such as auto- and cross-correlation and Fourier transform. Time-resolved EMF's as high as one percent were observed, as well as sharp reductions in exit superheat

  15. Influence of the Entrainment Interface Layer on Cloud Microphysical Properties near Stratocumulus Top

    NASA Astrophysics Data System (ADS)

    Chuang, P. Y.; Carman, J. K.; Rossiter, D. L.

    2010-12-01

    Entrainment across the stratocumulus-topped boundary layer is a key process governing the cloud properties and evolution. This process is not well-represented even in high-resolution large-eddy simulations, in part due to the sharp gradients in temperature, buoyancy and (usually) humidity that occur at the top of the boundary layer. In summer 2008, the Physics of Stratocumulus Top (POST) field campaign conduct extensive measurements in the vicinity of cloud top, including the so-called entrainment interface layer or EIL that separates boundary layer and free tropospheric air. Roughly half of the fifteen flights occurred during the day (near solar noon) while the remaining flights occurred during late evening-to-night when solar input was minimal. A wide diversity of EIL properties has been revealed over the course of the campaign. EIL vertical thickness diagnosed using total water varies from fairly thin (~20 m) to very thick (>100 m). The thickness and intensity of the turbulent layer in this interfacial region also varies substantially, with the top of the significantly turbulent region ranging from 10 m to 50 m above cloud top. Shear in the vicinity of cloud top also varied strongly from day-to-day. While almost all cases exhibited strong jumps in potential temperature, there are a number of cases where the jump in total water was very small-to-none, and one case where total water was higher in the free troposphere by 1.4 g/kg. POST thus demonstrates that the cloud-top interfacial region exhibits a rich and diverse range of properties. This study focuses on how this EIL diversity affects the stratocumulus cloud itself. We build on our study of the EIL dynamic and thermodynamic properties to investigate the influence of the EIL on the microphysical properties of the stratocumulus in the vicinity of cloud top. Entrainment of the overlying warmer and (usually) drier air can strongly impact the amount of liquid water as well as the size and concentration of cloud

  16. The role of organic compounds in cloud formation: Relative importance of entrainment, co-condensation and particle-phase properties

    NASA Astrophysics Data System (ADS)

    Lowe, Samuel; Partridge, Daniel; Topping, David; Riipinen, Ilona

    2016-04-01

    The organic fraction of atmospheric aerosols is widely acknowledged to affect the cloud nucleating potential of aerosols. Cloud droplet formation through activation of non-volatile CCN is considered to be relatively well understood, however, there are fewer systematic studies on the activation of aerosols containing semi-volatile organic compounds that co-condense alongside water vapour, thus enhancing CCN activity. Although the significance of co-condensation of organic vapours for cloud droplet number concentration predictions has recently been identified, it remains uncertain how this process may interact with atmospheric dynamics. In addition to co-condensation of existing in-cloud material, additional semi-volatile mass can be entrained from the surrounding environment. Reduced cloud droplet number concentrations are expected as the parcel is diluted with clean air; however, additional soluble mass in the particle phase promotes droplet activation. The extent of increased droplet activation due to co-condensation relies also on the physiochemical properties of the organic compounds, as seen in several other phase partitioning sensitivity studies. In this work we study the simultaneous impact of entrainment and co-condensation, the relative importance of these two processes at different atmospheric conditions, their interactions with each other, and the particle-phase chemistry in terms of cloud microphysical properties and their parametric sensitivities. To assess the importance of the entrainment of semi-volatile materials as compared with their co-condensation and chemical properties, a pseudo-adiabatic cloud parcel model with a detailed description of bin microphysics is employed. We have added the co-condensation process to the model such that it is coupled with the parametric entrainment representation. The effects of entrainment and co-condensation are benchmarked independently and simultaneously against a control simulation. Furthermore, we probe the

  17. SEQUENTIAL RADIOCHEMICAL ANALYSIS FOR RUTHENIUM, STRONTIUM AND CESIUM IN ENVIRONMENTAL AIR

    EPA Science Inventory

    In routine surveillance operations, the radionuclide measurement of air discharged from an operating nuclear facility involves the entrainment of radionuclides on selective filter or absorptive media, and the determination of their gross beta activity. However, a more sensitive t...

  18. Entrainment characteristics of unsteady subsonic jets. [for V/STOL aircraft

    NASA Technical Reports Server (NTRS)

    Platzer, M. F.; Simmons, J. M.; Bremhorst, K.

    1979-01-01

    The effectiveness of jet unsteadiness in enhancing flow entrainment was assessed. It was conducted that entrainment depends on the type and amount of jet unsteadiness. Apparently, the mere introduction of jet unsteadiness by small sinusoidal flow angle variations is insufficient to enhance entrainment but, it should be noted that the results were obtained at measuring stations which are all many nozzle widths downstream of the jet nozzle. Thus, no fully conclusive statement can be made at this time about the entrainment close to the nozzle. The high entrainment of the fluidically oscillated jet was caused by the high-frequency content of this square wave type of oscillation but more detailed measurements are clearly needed, in particular for the fluidically oscillated and the pulsed jets. Practical ejector application requires the proper trade-off between entrainment and primary nozzle thrust efficiency.

  19. Effects of continuous chlorination on entrained estuarine plankton

    SciTech Connect

    Erickson, S.J.; Foulk, H.R.

    1980-01-01

    Technical report: The effects of continuous chlorination in running sea water on entrained plankton were examined. The concentration of ATP was used as an indicator of biomass because: it is present in all living cells; the concentration is proportional to the living biomass; and dead cells lose ATP rapidly. Effects were measured by bioluminescence; luciferin-luciferase reagents from firefly lanterns were used to analyze ATP concentration. Results indicate that ATP measurement is an accurate, effective means of evaluating damage done to planktonic organisms by continuous chlorination. Further studies of the effects of low-concentration, continuous chlorination are recommended. (13 references, 1 table)

  20. Porous Sphere in Stratified Environments: Entrainment and Diffusion

    NASA Astrophysics Data System (ADS)

    Camassa, Roberto; Falcon, Claudia; Khatri, Shilpa; McLaughlin, Richard; UNC Joint Fluids Lab Team

    2014-11-01

    A theoretical, experimental, and numerical study of porous spheres falling in stratified fluids will be presented. The systematic justification of asymptotic regimes resulting in asymptotic models with ``heat bath'' boundary conditions for salinity are derived in low Reynolds number regimes. Violation of these asymptotic scalings will be discussed in the context of experiments and mathematical modeling. In particular the presence of a salt depletion or enrichment wake left behind by the settling, ab/de-sorbing sphere, and its competition with entrainment, will be presented and highlighted. Experimental results with microporous spheres as well calibrated manufactured drilled spheres will be compared. Supported by: NSF CMG, NSF RTG, ONR.

  1. IDMS and DWPF SRAT offgas flux and particle entrainment

    SciTech Connect

    Ritter, J.A.

    1992-11-11

    Bench scale experiments showed that the peak H2 generation rate increases with an increase in the PHA addition/evaporation rate. A 2,500 gal Slurry Mix Evaporator Condensate Tank (SMECT) was installed in the IDMS to allow performing PHA addition and evaporation both at the same rate and continuously. The SMECT allowed prototypic boil-up rates to be used, which allowed the investigation of hydrogen evolution in a more prototypic fashion and also made it possible to investigate solids entrainment. in the offgas. The results of these investigations are discussed in this report.

  2. Attraction and social coordination: mutual entrainment of vocal activity rhythms.

    PubMed

    McGarva, Andrew R; Warner, Rebecca M

    2003-05-01

    To investigate factors that affect the mutual entrainment of vocal activity rhythms, female general psychology students paired according to attitude similarity questionnaires engaged in 40-minute introductory conversations. Fourier analyses performed on speakers' on-off vocal activity demonstrated periodic oscillations in talkativeness. Although some dyads coordinated their vocal activity rhythms, speech accommodation was not predicted by attitude similarity or attraction and did not affect ratings of conversation quality. These rhythms of dialogue appear resistant to change, their behavioral momentum rooted perhaps in an underlying chronobiology. PMID:12845943

  3. Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

    DOE PAGESBeta

    Yum, Seong Soo; Wang, Jian; Liu, Yangang; Senum, Gunnar; Springston, Stephen; McGraw, Robert; Yeom, Jae Min

    2015-05-27

    Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurementsmore » were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.« less

  4. Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

    SciTech Connect

    Yum, Seong Soo; Wang, Jian; Liu, Yangang; Senum, Gunnar; Springston, Stephen; McGraw, Robert; Yeom, Jae Min

    2015-05-27

    Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurements were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.

  5. Cloud microphysical relationships and their implication on entrainment and mixing mechanisms for marine and continental stratocumulus clouds

    NASA Astrophysics Data System (ADS)

    Yum, S. S.; Yeom, J. M.; Wang, J.; Liu, Y.; Senum, G.; Springston, S. R.; McGraw, R. L.; Lu, C.

    2015-12-01

    Cloud microphysical data obtained from aircraft measurements of stratocumulus clouds over the southeastern pacific during the VOCALS-Rex field campaign and over the Great Plains region in Oklahoma during the RACORO field campaign were analyzed for evidence of entrainment mixing of air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at various rates (1 Hz, 10 Hz and 40 Hz). For the maritime stratocumulus clouds, the dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurements were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top. For the continental stratocumulus clouds, the positive relationship between V and L was even more pronounced while the scale parameters were less indicative of inhomogeneous mixing. Finding evidence for vertical circulation mixing was difficult for these clouds because flight plans in this campaign were not designed to investigate such process.

  6. A viscoplastic lubrication model for entrainment by avalanches and debris flows, and comparison with experiments

    NASA Astrophysics Data System (ADS)

    Bates, Belinda; Ancey, Christophe

    2015-04-01

    Recently, experiments were designed and carried out examining how a viscoplastic avalanche begins to entrain a shallow layer of identical fluid lying in its path, much like a snow avalanche or mud flow which suddenly encounters an entrainable layer, described as a yield stress material. This represents a simplified problem, investigated in order to gain some physical insight into entrainment by avalanches. These experiments serve as a test for mathematical models of entraining gravity currents. Two classes of entrainment behaviour were observed: either the avalanche ``glided'' out over the entrainable bed, immediately shearing it in the downstream direction and progressively incorporating fluid down to the rigid base, or the avalanche seemed to ``roll'' out onto the entrainable bed, with strong motion in the slope-normal direction in the bed after yield. This difference in behaviour was dictated by the magnitude of the flume's slope. For the steeper flows studied (20 and 24 degrees), entrainment was principally in the former class, whereas for shallower slope angle (12 and 16 degrees) entrainment more closely resembled the latter type. This would suggest that there is a competition between the normal and shear stresses exerted on the bed, with bed-yield and entrainment occurring when these stresses exceed a critical value. An interesting phenomenon that was observed in all cases was a sort of buckling of the bed, downstream of the avalanche front. This was far more significant in the flows down shallower slopes, and regular waves were created in the bed with wavelength dependent on the flow depth. Based on theoretical comparisons with non-entraining Herschel Bulkley flows, the physics of entraining flows are investigated numerically for shallow viscoplastic gravity currents on different slopes. The predictions are compared with the experimental values for velocity field and surface height. The model was successful in reproducing velocities of the correct order, but

  7. Irregular Speech Rate Dissociates Auditory Cortical Entrainment, Evoked Responses, and Frontal Alpha

    PubMed Central

    Kayser, Stephanie J.; Ince, Robin A.A.; Gross, Joachim

    2015-01-01

    The entrainment of slow rhythmic auditory cortical activity to the temporal regularities in speech is considered to be a central mechanism underlying auditory perception. Previous work has shown that entrainment is reduced when the quality of the acoustic input is degraded, but has also linked rhythmic activity at similar time scales to the encoding of temporal expectations. To understand these bottom-up and top-down contributions to rhythmic entrainment, we manipulated the temporal predictive structure of speech by parametrically altering the distribution of pauses between syllables or words, thereby rendering the local speech rate irregular while preserving intelligibility and the envelope fluctuations of the acoustic signal. Recording EEG activity in human participants, we found that this manipulation did not alter neural processes reflecting the encoding of individual sound transients, such as evoked potentials. However, the manipulation significantly reduced the fidelity of auditory delta (but not theta) band entrainment to the speech envelope. It also reduced left frontal alpha power and this alpha reduction was predictive of the reduced delta entrainment across participants. Our results show that rhythmic auditory entrainment in delta and theta bands reflect functionally distinct processes. Furthermore, they reveal that delta entrainment is under top-down control and likely reflects prefrontal processes that are sensitive to acoustical regularities rather than the bottom-up encoding of acoustic features. SIGNIFICANCE STATEMENT The entrainment of rhythmic auditory cortical activity to the speech envelope is considered to be critical for hearing. Previous work has proposed divergent views in which entrainment reflects either early evoked responses related to sound encoding or high-level processes related to expectation or cognitive selection. Using a manipulation of speech rate, we dissociated auditory entrainment at different time scales. Specifically, our

  8. Impact of entrainment and impingement on fish populations in the Hudson River estuary. Volume I. Entrainment-impact estimates for six fish populations inhabiting the Hudson River estuary

    SciTech Connect

    Boreman, J.; Barnthouse, L.W.; Vaughn, D.S.; Goodyear, C.P.; Christensen, S.W.; Kumar, K.D.; Kirk, B.L.; Van Winkle, W.

    1982-01-01

    This volume is concerned with the estimation of the direct (or annual) entrainment impact of power plants on populations of striped bass, white perch, Alosa spp. (blueback herring and alewife), American shad, Atlantic tomcod, and bay anchovy in the Hudson River estuary. Entrainment impact results from the killing of fish eggs, larvae, and young juveniles that are contained in the cooling water cycled through a power plant. An Empirical Transport Model (ETM) is presented as the means of estimating a conditional entrainment mortality rate (defined as the fraction of a year class which would be killed due to entrainment in the absence of any other source of mortality). Most of this volume is concerned with the estimation of several parameters required by the ETM: physical input parameters (e.g., power-plant withdrawal flow rates); the longitudinal distribution of ichthyoplankton in time and space; the duration of susceptibility of the vulnerable organisms; the W-factors, which express the ratios of densities of organisms in power plant intakes to densities of organisms in the river; and the entrainment mortality factors (f-factors), which express the probability that an organism will be killed if it is entrained. Once these values are obtained, the ETM is used to estimate entrainment impact for both historical and projected conditions.

  9. The origin of early age expansions induced in cementitious materials containing shrinkage reducing admixtures

    SciTech Connect

    Sant, Gaurav; Lothenbach, Barbara; Juilland, Patrick; Le Saout, Gwenn; Weiss, Jason; Scrivener, Karen

    2011-03-15

    Studies on the early-age shrinkage behavior of cement pastes, mortars, and concretes containing shrinkage reducing admixtures (SRAs) have indicated these mixtures frequently exhibit an expansion shortly after setting. While the magnitude of the expansion has been noted to be a function of the chemistry of the cement and the admixture dosage; the cause of the expansion is not clearly understood. This investigation uses measurements of autogenous deformation, X-ray diffraction, pore solution analysis, thermogravimetry, and scanning electron microscopy to study the early-age properties and describe the mechanism of the expansion in OPC pastes made with and without SRA. The composition of the pore solution indicates that the presence of the SRA increases the portlandite oversaturation level in solution which can result in higher crystallization stresses which could lead to an expansion. This observation is supported by deformation calculations for the systems examined.

  10. Direct-to-Consumer Racial Admixture Tests and Beliefs About Essential Racial Differences

    PubMed Central

    Phelan, Jo C.; Link, Bruce G.; Zelner, Sarah; Yang, Lawrence H.

    2015-01-01

    Although at first relatively disinterested in race, modern genomic research has increasingly turned attention to racial variations. We examine a prominent example of this focus—direct-to-consumer racial admixture tests—and ask how information about the methods and results of these tests in news media may affect beliefs in racial differences. The reification hypothesis proposes that by emphasizing a genetic basis for race, thereby reifying race as a biological reality, the tests increase beliefs that whites and blacks are essentially different. The challenge hypothesis suggests that by describing differences between racial groups as continua rather than sharp demarcations, the results produced by admixture tests break down racial categories and reduce beliefs in racial differences. A nationally representative survey experiment (N = 526) provided clear support for the reification hypothesis. The results suggest that an unintended consequence of the genomic revolution may be to reinvigorate age-old beliefs in essential racial differences. PMID:25870464

  11. Consequences of meta-stable (177m)Lu admixture in (177)Lu for patient dosimetry.

    PubMed

    Konijnenberg, Mark W

    2015-01-01

    Lutetium-177 ((177)Lu) is a rare earth metal in the lanthanides series which decays by beta emission with a half life of 6.647 days to three excited states and the ground state of (177)Hf. When (177)Lu is produced by neutron capture in (176)Lu, inevitably an admixture is formed of the long-lived isomer (177)mLu. As its half-life of 160.4 days is so much longer than that of (177)Lu, concerns are raised on its possible enhancement in radiation dose to the patient treated with (177)Lu-DOTA-octreotate. This report evaluates this possible enhancement of the absorbed dose, based on the published pharmacokinetic profile of (177)Lu-DOTA-octreotate and assuming an admixture of 1 kBq (177)mLu /MBq (177)Lu (0.1%). PMID:25771362

  12. Examination of turbulent entrainment-mixing mechanisms using a combined approach

    SciTech Connect

    Lu, C.; Liu, Y.; Niu, S.

    2011-10-01

    Turbulent entrainment-mixing mechanisms are investigated by applying a combined approach to the aircraft measurements of three drizzling and two nondrizzling stratocumulus clouds collected over the U.S. Department of Energy's Atmospheric Radiation Measurement Southern Great Plains site during the March 2000 cloud Intensive Observation Period. Microphysical analysis shows that the inhomogeneous entrainment-mixing process occurs much more frequently than the homogeneous counterpart, and most cases of the inhomogeneous entrainment-mixing process are close to the extreme scenario, having drastically varying cloud droplet concentration but roughly constant volume-mean radius. It is also found that the inhomogeneous entrainment-mixing process can occur both near the cloud top and in the middle level of a cloud, and in both the nondrizzling clouds and nondrizzling legs in the drizzling clouds. A new dimensionless number, the scale number, is introduced as a dynamical measure for different entrainment-mixing processes, with a larger scale number corresponding to a higher degree of homogeneous entrainment mixing. Further empirical analysis shows that the scale number that separates the homogeneous from the inhomogeneous entrainment-mixing process is around 50, and most legs have smaller scale numbers. Thermodynamic analysis shows that sampling average of filament structures finer than the instrumental spatial resolution also contributes to the dominance of inhomogeneous entrainment-mixing mechanism. The combined microphysical-dynamical-thermodynamic analysis sheds new light on developing parameterization of entrainment-mixing processes and their microphysical and radiative effects in large-scale models.

  13. Analysis and numerical simulation of a laboratory analog of radiatively induced cloud-top entrainment.

    SciTech Connect

    Kerstein, Alan R.; Sayler, Bentley J.; Wunsch, Scott Edward; Schmidt, Heiko; Nedelec, Renaud

    2010-11-01

    Numerical simulations using the One-Dimensional-Turbulence model are compared to water-tank measurements [B. J. Sayler and R. E. Breidenthal, J. Geophys. Res. 103 (D8), 8827 (1998)] emulating convection and entrainment in stratiform clouds driven by cloud-top cooling. Measured dependences of the entrainment rate on Richardson number, molecular transport coefficients, and other experimental parameters are reproduced. Additional parameter variations suggest more complicated dependences of the entrainment rate than previously anticipated. A simple algebraic model indicates the ways in which laboratory and cloud entrainment behaviors might be similar and different.

  14. Sensory Entrainment Mechanisms in Auditory Perception: Neural Synchronization Cortico-Striatal Activation

    PubMed Central

    Sameiro-Barbosa, Catia M.; Geiser, Eveline

    2016-01-01

    The auditory system displays modulations in sensitivity that can align with the temporal structure of the acoustic environment. This sensory entrainment can facilitate sensory perception and is particularly relevant for audition. Systems neuroscience is slowly uncovering the neural mechanisms underlying the behaviorally observed sensory entrainment effects in the human sensory system. The present article summarizes the prominent behavioral effects of sensory entrainment and reviews our current understanding of the neural basis of sensory entrainment, such as synchronized neural oscillations, and potentially, neural activation in the cortico-striatal system. PMID:27559306

  15. Refractive index matched suspensions as a tool for investigating entrainment by avalanches and debris flows

    NASA Astrophysics Data System (ADS)

    Bates, Belinda; Ancey, Christophe

    2015-04-01

    Geophysical gravity flows such as avalanches and debris flows are complicated mixtures of fluid and solids, often containing particle sizes of many orders of magnitude. In a debris flow, for example, the composition varies from head to tail, and from bottom to top due to particle size segregation and recirculation. In addition the solid components may have different masses and mechanical properties. For this reason, a complete understanding of substrate entrainment by this type of flow is still out of reach. A common strategy for advancing our understanding of the physics of processes like entrainment is to use a greatly simplified laboratory model of a debris flow, and take internal and bulk measurements. This idealized technique forms the basis of this study, in which a two-phase, monodisperse suspension of PMMA beads in a refractive-index matched suspending fluid flowed down a flume, encountering an entrainable region of the same suspension on the way. This study represents the first attempt of taking continuous internal velocity measurements inside a flowing, entraining model avalanche or debris flow in the laboratory. Interior PIV measurements of flow velocity were taken in the entrainable region, along with surface height measurements, to shed some light on the entrainment mechanisms and to see how the bulk flow responded. Further, some differential pressure measurements were made in the entrainable bed to see if pore-pressure peaks had any correlation with significant events during entrainment. We present our preliminary findings and discuss the suitability of the method to entrainment investigations.

  16. Ifluence of crystallization and entrainment of cooler material on the emplacement of basaltic aa lava flows

    NASA Technical Reports Server (NTRS)

    Crisp, Joy; Baloga, Stephen

    1994-01-01

    A theoretical model is used to describe and investigate the effects of simultaneous crystallization, radiation loss, and entrainment of cooler material on the temperature of a well-mixed core of an active aa lava flow. Entrainment of crust, levee debris, and base material into the interior of active flows has been observed, but the degree of assimilation and the thermal consequences are difficult to quantify. The rate of entrainment can be constrained by supplementing the theoretical model with information on the crystallization along the path of the flow and estimation of the radiative loss from the flow interior. Application of the model is demonstrated with the 1984 Mauna Loa flow, which was erupted about 30 C undercooled. Without any entrainment of cooler material, the high crystallization rates would have driven temperatures in the core wall above temperatures measured by thermocouple and estimated from glass geothermometry. One plausible scenario for this flow, which agrees with available temperature and crystallinity measurements, has a high initial rate of entrainment during the first 8 hours of travel (a mass ratio of entrained material to fluid core of about 15% if the average temperature of the entrained material was 600 C), which counterbalances the latent heat from approximately 40% crystallization. In this scenario, the model suggests an additional 5% crystallization and a 5% entrainment mass ratio over the subsequent 16-hour period. Measurements of crystallization, radiative losses, and entrainment factors are necessary for understanding the detailed thermal histories of active lava flows.

  17. Sensory Entrainment Mechanisms in Auditory Perception: Neural Synchronization Cortico-Striatal Activation.

    PubMed

    Sameiro-Barbosa, Catia M; Geiser, Eveline

    2016-01-01

    The auditory system displays modulations in sensitivity that can align with the temporal structure of the acoustic environment. This sensory entrainment can facilitate sensory perception and is particularly relevant for audition. Systems neuroscience is slowly uncovering the neural mechanisms underlying the behaviorally observed sensory entrainment effects in the human sensory system. The present article summarizes the prominent behavioral effects of sensory entrainment and reviews our current understanding of the neural basis of sensory entrainment, such as synchronized neural oscillations, and potentially, neural activation in the cortico-striatal system. PMID:27559306

  18. Intraspecific Genetic Admixture and the Morphological Diversification of an Estuarine Fish Population Complex

    PubMed Central

    Legault, Michel

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

  19. Intraspecific genetic admixture and the morphological diversification of an estuarine fish population complex.

    PubMed

    Dodson, Julian J; Bourret, Audrey; Barrette, Marie France; Turgeon, Julie; Daigle, Gaétan; Legault, Michel; Lecomte, Frédéric

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

  20. Tracing the origin of the east-west population admixture in the Altai region (Central Asia).

    PubMed

    González-Ruiz, Mercedes; Santos, Cristina; Jordana, Xavier; Simón, Marc; Lalueza-Fox, Carles; Gigli, Elena; Aluja, Maria Pilar; Malgosa, Assumpció

    2012-01-01

    A recent discovery of Iron Age burials (Pazyryk culture) in the Altai Mountains of Mongolia may shed light on the mode and tempo of the generation of the current genetic east-west population admixture in Central Asia. Studies on ancient mitochondrial DNA of this region suggest that the Altai Mountains played the role of a geographical barrier between West and East Eurasian lineages until the beginning of the Iron Age. After the 7th century BC, coinciding with Scythian expansion across the Eurasian steppes, a gradual influx of East Eurasian sequences in Western steppes is detected. However, the underlying events behind the genetic admixture in Altai during the Iron Age are still unresolved: 1) whether it was a result of migratory events (eastward firstly, westward secondly), or 2) whether it was a result of a local demographic expansion in a 'contact zone' between European and East Asian people. In the present work, we analyzed the mitochondrial DNA lineages in human remains from Bronze and Iron Age burials of Mongolian Altai. Here we present support to the hypothesis that the gene pool of Iron Age inhabitants of Mongolian Altai was similar to that of western Iron Age Altaians (Russia and Kazakhstan). Thus, this people not only shared the same culture (Pazyryk), but also shared the same genetic east-west population admixture. In turn, Pazyryks appear to have a similar gene pool that current Altaians. Our results further show that Iron Age Altaians displayed mitochondrial lineages already present around Altai region before the Iron Age. This would provide support for a demographic expansion of local people of Altai instead of westward or eastward migratory events, as the demographic event behind the high population genetic admixture and diversity in Central Asia. PMID:23152818

  1. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence.

    PubMed

    Molofsky, Jane; Keller, Stephen R; Lavergne, Sébastien; Kaproth, Matthew A; Eppinga, Maarten B

    2014-04-01

    Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological organization such as communities and ecosystems. Because biological invasions frequently involve the admixture of previously isolated lineages as a result of human-aided dispersal, studies of invasive populations can reveal how admixture results in novel genotypes and shifts in functional trait variation within populations. Further, because invasive species can be ecosystem engineers within invaded ecosystems, admixture-induced shifts in the functional traits of invaders can affect the composition of native biodiversity and alter the flow of resources through the system. Thus, invasions represent promising yet under-investigated examples of how the effects of short-term evolutionary changes can cascade across biological scales of diversity. Here, we propose a conceptual framework that admixture between divergent source populations during biological invasions can reorganize the genetic variation underlying key functional traits, leading to shifts in the mean and variance of functional traits within invasive populations. Changes in the mean or variance of key traits can initiate new ecological feedback mechanisms that result in a critical transition from a native ecosystem to a novel invasive ecosystem. We illustrate the application of this framework with reference to a well-studied plant model system in invasion biology and show how a combination of quantitative genetic experiments, functional trait studies, whole ecosystem field studies and modeling can be used to explore the dynamics predicted to trigger these critical transitions. PMID:24772269

  2. GWAS and admixture mapping identify different asthma-associated loci in Latinos: The GALA II Study

    PubMed Central

    Galanter, Joshua M; Gignoux, Christopher R; Torgerson, Dara G; Roth, Lindsey A; Eng, Celeste; Oh, Sam S; Nguyen, Elizabeth A; Drake, Katherine A; Huntsman, Scott; Hu, Donglei; Sen, Saunak; Davis, Adam; Farber, Harold J.; Avila, Pedro C.; Brigino-Buenaventura, Emerita; LeNoir, Michael A.; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodríguez-Cintrón, William; Estrada, Andres Moreno; Mendoza, Karla Sandoval; Winkler, Cheryl A.; Klitz, William; Romieu, Isabelle; London, Stephanie J.; Gilliland, Frank; Martinez, Fernando; Bustamante, Carlos; Williams, L Keoki; Kumar, Rajesh; Rodríguez-Santana, José R.; Burchard, and Esteban G.

    2013-01-01

    Background Asthma is a complex disease with both genetic and environmental causes. Genome-wide association studies of asthma have mostly involved European populations and replication of positive associations has been inconsistent. Objective To identify asthma-associated genes in a large Latino population with genome-wide association analysis and admixture mapping. Methods Latino children with asthma (n = 1,893) and healthy controls (n = 1,881) were recruited from five sites in the United States: Puerto Rico, New York, Chicago, Houston, and the San Francisco Bay Area. Subjects were genotyped on an Affymetrix World Array IV chip. We performed genome-wide association and admixture mapping to identify asthma-associated loci. Results We identified a significant association between ancestry and asthma at 6p21 (lowest p-value: rs2523924, p < 5 × 10−6). This association replicates in a meta-analysis of the EVE Asthma Consortium (p = 0.01). Fine mapping of the region in this study and the EVE Asthma Consortium suggests an association between PSORS1C1 and asthma. We confirmed the strong allelic association between the 17q21 asthma in Latinos (IKZF3, lowest p-value: rs90792, OR: 0.67, 95% CI 0.61 – 0.75, p = 6 × 10−13) and replicated associations in several genes that had previously been associated with asthma in genome-wide association studies. Conclusions Admixture mapping and genome-wide association are complementary techniques that provide evidence for multiple asthma-associated loci in Latinos. Admixture mapping identifies a novel locus on 6p21 that replicates in a meta-analysis of several Latino populations, while genome-wide association confirms the previously identified locus on 17q21. PMID:24406073

  3. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence

    PubMed Central

    Molofsky, Jane; Keller, Stephen R; Lavergne, Sébastien; Kaproth, Matthew A; Eppinga, Maarten B

    2014-01-01

    Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological organization such as communities and ecosystems. Because biological invasions frequently involve the admixture of previously isolated lineages as a result of human-aided dispersal, studies of invasive populations can reveal how admixture results in novel genotypes and shifts in functional trait variation within populations. Further, because invasive species can be ecosystem engineers within invaded ecosystems, admixture-induced shifts in the functional traits of invaders can affect the composition of native biodiversity and alter the flow of resources through the system. Thus, invasions represent promising yet under-investigated examples of how the effects of short-term evolutionary changes can cascade across biological scales of diversity. Here, we propose a conceptual framework that admixture between divergent source populations during biological invasions can reorganize the genetic variation underlying key functional traits, leading to shifts in the mean and variance of functional traits within invasive populations. Changes in the mean or variance of key traits can initiate new ecological feedback mechanisms that result in a critical transition from a native ecosystem to a novel invasive ecosystem. We illustrate the application of this framework with reference to a well-studied plant model system in invasion biology and show how a combination of quantitative genetic experiments, functional trait studies, whole ecosystem field studies and modeling can be used to explore the dynamics predicted to trigger these critical transitions. PMID:24772269

  4. Tracing the Origin of the East-West Population Admixture in the Altai Region (Central Asia)

    PubMed Central

    González-Ruiz, Mercedes; Santos, Cristina; Jordana, Xavier; Simón, Marc; Lalueza-Fox, Carles; Gigli, Elena; Aluja, Maria Pilar; Malgosa, Assumpció

    2012-01-01

    A recent discovery of Iron Age burials (Pazyryk culture) in the Altai Mountains of Mongolia may shed light on the mode and tempo of the generation of the current genetic east-west population admixture in Central Asia. Studies on ancient mitochondrial DNA of this region suggest that the Altai Mountains played the role of a geographical barrier between West and East Eurasian lineages until the beginning of the Iron Age. After the 7th century BC, coinciding with Scythian expansion across the Eurasian steppes, a gradual influx of East Eurasian sequences in Western steppes is detected. However, the underlying events behind the genetic admixture in Altai during the Iron Age are still unresolved: 1) whether it was a result of migratory events (eastward firstly, westward secondly), or 2) whether it was a result of a local demographic expansion in a ‘contact zone’ between European and East Asian people. In the present work, we analyzed the mitochondrial DNA lineages in human remains from Bronze and Iron Age burials of Mongolian Altai. Here we present support to the hypothesis that the gene pool of Iron Age inhabitants of Mongolian Altai was similar to that of western Iron Age Altaians (Russia and Kazakhstan). Thus, this people not only shared the same culture (Pazyryk), but also shared the same genetic east-west population admixture. In turn, Pazyryks appear to have a similar gene pool that current Altaians. Our results further show that Iron Age Altaians displayed mitochondrial lineages already present around Altai region before the Iron Age. This would provide support for a demographic expansion of local people of Altai instead of westward or eastward migratory events, as the demographic event behind the high population genetic admixture and diversity in Central Asia. PMID:23152818

  5. Admixture Mapping Provides Evidence of Association of the VNN1 Gene with Hypertension

    PubMed Central

    Zhu, Xiaofeng; Cooper, Richard S.

    2007-01-01

    Migration patterns in modern societies have created the opportunity to use population admixture as a strategy to identify susceptibility genes. To implement this strategy, we genotyped a highly informative ancestry marker panel of 2270 single nucleotide polymorphisms in a random population sample of African Americans (N = 1743), European Americans (N = 1000) and Mexican Americans (N = 581). We then examined the evidence for over-transmission of specific loci to cases from one of the two ancestral populations. Hypertension cases and controls were defined based on standard clinical criteria. Both case-only and case-control analyses were performed among African Americans. With the genome-wide markers we replicated the findings identified in our previous admixture mapping study on chromosomes 6 and 21 [1]. For case-control analysis we then genotyped 51 missense SNPs in 36 genes spaced across an 18.3 Mb region. Further analyses demonstrated that the missense SNP rs2272996 (or N131S) in the VNN1 gene was significantly associated with hypertension in African Americans and the association was replicated in Mexican Americans; a non-significant opposite association was observed in European Americans. This SNP also accounted for most of the evidence observed in the admixture analysis on chromosome 6. Despite these encouraging results, susceptibility loci for hypertension have been exceptionally difficult to localize and confirmation by independent studies will be necessary to establish these findings. PMID:18043751

  6. Dissecting the genetic structure and admixture of four geographical Malay populations.

    PubMed

    Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; de Silva, H Janaka; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R; Teo, Yik-Ying; Xu, Shuhua

    2015-01-01

    The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%-62%), Proto-Malay (15%-31%), East Asian (4%-16%) and South Asian (3%-34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations. PMID:26395220

  7. A high-density admixture scan in 1,670 African Americans with hypertension.

    PubMed

    Deo, Rahul C; Patterson, Nick; Tandon, Arti; McDonald, Gavin J; Haiman, Christopher A; Ardlie, Kristin; Henderson, Brian E; Henderson, Sean O; Reich, David

    2007-11-01

    Hypertension (HTN) is a devastating disease with a higher incidence in African Americans than European Americans, inspiring searches for genetic variants that contribute to this difference. We report the results of a large-scale admixture scan for genes contributing HTN risk, in which we screened 1,670 African Americans with HTN and 387 control individuals for regions of the genome with elevated proportion of African or European ancestry. No loci were identified that were significantly associated with HTN. We also searched for evidence of an admixture signal at 40 candidate genes and eight previously reported linkage peaks, but none appears to contribute substantially to the differential HTN risk between African and European Americans. Finally, we observed nominal association at one of the loci detected in the admixture scan of Zhu et al. 2005 (p = 0.016 at 6q24.3 correcting for four hypotheses tested), although we caution that the significance is marginal and the estimated odds ratio of 1.19 per African allele is less than what would be expected from the original report; thus, further work is needed to follow up this locus. PMID:18020707

  8. Chemical stability of an admixture combining ziconotide and bupivacaine during simulated intrathecal administration.

    PubMed

    Shields, David; Montenegro, Rick; Aclan, Jennifer

    2007-10-01

    Objective.  To determine the stability of an admixture combining ziconotide with bupivacaine hydrochloride during simulated intrathecal infusion under laboratory conditions at 37°. Materials and Methods.  An admixture containing ziconotide (25 µg/mL) and bupivacaine hydrochloride (5 mg/mL) was stored in SynchroMed® II pumps at 37° and in control vials at either 37° or 5°. Using high-performance liquid chromatography, drug concentrations were determined from samples obtained at varying intervals during the 30-day study. Results.  After 30 days, pump ziconotide and bupivacaine hydrochloride concentrations measured an average of 86.9% and 99.4% of their initial concentrations, respectively. Control vials displayed similar degradation rates for both drugs. Statistical evaluation of the ziconotide 95% confidence interval indicated that the ziconotide concentration would meet or exceed 90% and 80% of initial concentration for 22 days and 45 days, respectively. Conclusions.  An admixture containing 25 µg/mL ziconotide and 5 mg/mL bupivacaine hydrochloride was 90% stable for 22 days and 80% stable for 45 days (extrapolated) in SynchroMed® II infusion pumps. PMID:22150945

  9. A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle

    PubMed Central

    Hillis, David M.

    2014-01-01

    Genomic data facilitate opportunities to track complex population histories of divergence and gene flow. We developed a metric, scaled block size (SBS), which uses the nonrecombined block size of introgressed regions of chromosomes to differentiate between recent and ancient types of admixture, and applied it to the reconstruction of admixture in cattle. Cattle are descendants of 2 independently domesticated lineages, taurine and indicine, which diverged more than 200 000 years ago. Several breeds have hybrid ancestry between these divergent lineages. Using 47 506 single-nucleotide polymorphisms, we analyzed the genomic architecture of the ancestry of 1369 individuals. We focused on 4 groups with admixed ancestry, including 2 anciently admixed African breeds (n = 58; n = 43), New World cattle of Spanish origin (n = 51), and known recent hybrids (n = 46). We estimated the ancestry of chromosomal regions for each individual and used the SBS metric to differentiate the timing of admixture among groups and among individuals within groups. By comparing SBS values of test individuals with standards with known recent hybrid ancestry, we were able to differentiate individuals of recent hybrid origin from other admixed cattle. We also estimated ancestry at the chromosomal scale. The X chromosome exhibits reduced indicine ancestry in recent hybrid, New World, and western African cattle, with virtually no evidence of indicine ancestry in New World cattle. PMID:24510946

  10. Dissecting the genetic structure and admixture of four geographical Malay populations

    PubMed Central

    Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; Janaka de Silva, H.; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R.; Teo, Yik-Ying; Xu, Shuhua

    2015-01-01

    The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%–62%), Proto-Malay (15%–31%), East Asian (4%–16%) and South Asian (3%–34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations. PMID:26395220

  11. A High-Density Admixture Scan in 1,670 African Americans with Hypertension

    PubMed Central

    Deo, Rahul C; Patterson, Nick; Tandon, Arti; McDonald, Gavin J; Haiman, Christopher A; Ardlie, Kristin; Henderson, Brian E; Henderson, Sean O; Reich, David

    2007-01-01

    Hypertension (HTN) is a devastating disease with a higher incidence in African Americans than European Americans, inspiring searches for genetic variants that contribute to this difference. We report the results of a large-scale admixture scan for genes contributing HTN risk, in which we screened 1,670 African Americans with HTN and 387 control individuals for regions of the genome with elevated proportion of African or European ancestry. No loci were identified that were significantly associated with HTN. We also searched for evidence of an admixture signal at 40 candidate genes and eight previously reported linkage peaks, but none appears to contribute substantially to the differential HTN risk between African and European Americans. Finally, we observed nominal association at one of the loci detected in the admixture scan of Zhu et al. 2005 (p = 0.016 at 6q24.3 correcting for four hypotheses tested), although we caution that the significance is marginal and the estimated odds ratio of 1.19 per African allele is less than what would be expected from the original report; thus, further work is needed to follow up this locus. PMID:18020707

  12. Effects of lithium nitrate admixture on early-age cement hydration

    SciTech Connect

    Millard, M.J. Kurtis, K.E.

    2008-04-15

    Although the benefits of lithium admixtures for mitigation of alkali-silica reaction (ASR) have been well documented, the potential ancillary effects of lithium compounds on cement and concrete remain largely uncharacterized. To examine the effects of the most common lithium admixture - lithium nitrate - on early-age behavior, the admixture was introduced at dosages of 0% to 400% of the recommended dosage to six cements of varying composition and to a cement-fly ash blend. Behavior was examined by isothermal calorimetry and measurements of chemical shrinkage, autogenous shrinkage, and setting time. Results indicate that lithium nitrate accelerates the early hydration of most cements but may retard hydration after 24 h. In the lowest alkali cement tested, set times were shortened in the presence of lithium nitrate by 15-22%. Higher dosages appeared to increase autogenous shrinkage after 40 days. The replacement of cement by Class F fly ash at 20% by weight appeared to diminish the early acceleration effects, but later hydration retardation and autogenous shrinkage were still observed.

  13. Effect of chemical admixtures on properties of high-calcium fly ash geopolymer

    NASA Astrophysics Data System (ADS)

    Rattanasak, Ubolluk; Pankhet, Kanokwan; Chindaprasirt, Prinya

    2011-06-01

    Owing to the high viscosity of sodium silicate solution, fly ash geopolymer has the problems of low workability and rapid setting time. Therefore, the effect of chemical admixtures on the properties of fly ash geopolymer was studied to overcome the rapid set of the geopolymer in this paper. High-calcium fly ash and alkaline solution were used as starting materials to synthesize the geopolymer. Calcium chloride, calcium sulfate, sodium sulfate, and sucrose at dosages of 1wt% and 2wt% of fly ash were selected as admixtures based on concrete knowledge to improve the properties of the geopolymer. The setting time, compressive strength, and degree of reaction were recorded, and the microstructure was examined. The results show that calcium chloride significantly shortens both the initial and final setting times of the geopolymer paste. In addition, sucrose also delays the final setting time significantly. The degrees of reaction of fly ash in the geopolymer paste with the admixtures are all higher than those of the control paste. This contributes to the obvious increases in compressive strength.

  14. Uncontrolled admixture and loss of genetic diversity in a local Vietnamese pig breed

    PubMed Central

    Berthouly-Salazar, Cécile; Thévenon, Sophie; Van, Thu Nhu; Nguyen, Binh Trong; Pham, Lan Doan; Chi, Cuong Vu; Maillard, Jean-Charles

    2012-01-01

    The expansion of intensive livestock production systems in developing countries has increased the introduction of highly productive exotic breeds facilitating indiscriminate crossbreeding with local breeds. In this study, we set out to investigate the genetic status of the Vietnamese Black H’mong pig breed by evaluating (1) genetic diversity and (2) introgression from exotic breeds. Two exotic breeds, namely Landrace and Yorkshire used for crossbreeding, and the H’mong pig population from Ha Giang (HG) province were investigated using microsatellite markers. Within the province, three phenotypes were observed: a White, a Spotted and a Black phenotype. Genetic differentiation between phenotypes was low (0.5–6.1%). The White phenotypes showed intermediate admixture values between exotic breeds and the Black HG population (0.53), indicating a crossbreed status. Management practices were used to predict the rate of private diversity loss due to exotic gene introgressions. After 60 generations, 100% of Black private alleles will be lost. This loss is accelerated if the admixture rate is increased but can be slowed down if the mortality rate (e.g., recruitment rate) is decreased. Our study showed that a large number of markers are needed for accurately identifying hybrid classes for closely related populations. While our estimate of admixture still seems underestimated, genetic erosion can occur very fast even through indiscriminate crossbreeding. PMID:22837841

  15. Chemical stability of ziconotide-clonidine hydrochloride admixtures with and without morphine sulfate during simulated intrathecal administration.

    PubMed

    Shields, David; Montenegro, Rick

    2007-10-01

    Objective.  To determine the stability of ziconotide-clonidine hydrochloride admixtures with and without morphine sulfate during simulated intrathecal infusion under laboratory conditions at 37°. Materials and Methods.  Admixtures of ziconotide (25 µg/mL) and clonidine hydrochloride (2 mg/mL) with and without morphine sulfate (35 mg/mL) were stored in Medtronic SynchroMed® II pumps at 37°. Pumps were sampled immediately after filling and at four additional time points over the course of 28 (ziconotide-clonidine hydrochloride admixture) or 20 (ziconotide-clonidine hydrochloride-morphine sulfate admixture) days. Drug concentrations were determined using high-performance liquid chromatography. Results.  Ziconotide concentration exceeded 97% of initial at all time points when combined with clonidine alone; statistical evaluation indicated that both ziconotide and clonidine concentrations would remain above 90% of initial for more than 60 days. When compounded with both clonidine and morphine, ziconotide and clonidine concentrations declined; statistical evaluation indicated that the ziconotide concentration was 70% of initial after 20 days, and that clonidine would remain 90% stable for 42 days. Morphine was stable in the presence of ziconotide and clonidine. Conclusions.  A ziconotide-clonidine admixture was 90% stable for 60 days (extrapolated), and a ziconotide-clonidine-morphine admixture was 70% stable for 20 days. PMID:22150946

  16. Newborn primate infants are entrained by low intensity lighting

    PubMed Central

    Rivkees, Scott A.; Hofman, Paul L.; Fortman, Jeffrey

    1997-01-01

    At the present time we do not know when the circadian timing system of human infants becomes responsive to light. Because of human study limitations, it is not currently possible to address this issue in clinical studies. Therefore, to provide insights into when the circadian system of humans becomes responsive to light, baboons were studied. We first assessed if the biological clock located in suprachiasmatic nuclei (SCN) is responsive to light at birth. When term newborn infants were exposed to bright light at night (5000 lux), SCN metabolic activity and c-fos mRNA expression increased, indicating the presence of photic responsiveness. When photic entrainment of developing rhythmicity was examined in infants, low intensity (200 lux) cycled lighting was sufficient to entrain circadian phase. However, low intensity lighting was not sufficient to induce changes in SCN metabolic activity or c-fos mRNA expression. Phase–response studies indicated that light exposure (200 lux) before the onset of activity most effectively shifted circadian phase. These data provide direct evidence that the SCN are responsive to visually mediated light information in a primate at birth. Further consideration of lighting conditions that infants are exposed to is therefore warranted. PMID:8990202

  17. Enhanced entrainability of genetic oscillators by period mismatch

    PubMed Central

    Hasegawa, Yoshihiko; Arita, Masanori

    2013-01-01

    Biological oscillators coordinate individual cellular components so that they function coherently and collectively. They are typically composed of multiple feedback loops, and period mismatch is unavoidable in biological implementations. We investigated the advantageous effect of this period mismatch in terms of a synchronization response to external stimuli. Specifically, we considered two fundamental models of genetic circuits: smooth and relaxation oscillators. Using phase reduction and Floquet multipliers, we numerically analysed their entrainability under different coupling strengths and period ratios. We found that a period mismatch induces better entrainment in both types of oscillator; the enhancement occurs in the vicinity of the bifurcation on their limit cycles. In the smooth oscillator, the optimal period ratio for the enhancement coincides with the experimentally observed ratio, which suggests biological exploitation of the period mismatch. Although the origin of multiple feedback loops is often explained as a passive mechanism to ensure robustness against perturbation, we study the active benefits of the period mismatch, which include increasing the efficiency of the genetic oscillators. Our findings show a qualitatively different perspective for both the inherent advantages of multiple loops and their essentiality. PMID:23389900

  18. Phase Sensitivity and Entrainment in a Modeled Bursting Neuron

    PubMed Central

    Demir, S. S.; Butera, R. J.; DeFranceschi, A. A.; Clark, J. W.; Byrne, J. H.

    1997-01-01

    A model of neuron R15 in Aplysia was used to study the mechanisms determining the phase-response curve (PRC) of the cell in response to both extrinsic current pulses and modeled synaptic input and to compare entrainment predictions from PRCs with those from actual simulations. Over the range of stimulus parameters studied, the PRCs of the model exhibited minimal dependence upon stimulus amplitude, and a strong dependence upon stimulus duration. State-space analysis of the effect of transient current pulses provided several important insights into the relationship between the PRC and the underlying dynamics of the model, such as a correlation between the prestimulus concentration of Ca2+ and the poststimulus phase of the oscillation. The system nullclines were also found to provide well-defined limits upon the perturbatory extent of a hyperpolarizing input. These results demonstrated that experimentally applied current pulses are sufficient to determine the shape of the PRC in response to a synaptic input, provided that the duration of the current pulse is of a duration similar to that of the evoked synaptic current. Furthermore, we found that predictions of phase-locked 1:m entrainment from PRCs were valid, even when the duration of the periodically applied pulses were a significant portion of the control limit cycle. ImagesFIGURE 5FIGURE 7FIGURE 8 PMID:9017188

  19. Debris entrainment and landform genesis during tidewater glacier surges

    NASA Astrophysics Data System (ADS)

    Lovell, Harold; Fleming, Edward J.; Benn, Douglas I.; Hubbard, Bryn; Lukas, Sven; Rea, Brice R.; Noormets, Riko; Flink, Anne E.

    2015-08-01

    The englacial entrainment of basal debris during surges presents an opportunity to investigate processes acting at the glacier bed. The subsequent melt-out of debris-rich englacial structures during the quiescent phase produces geometrical ridge networks on glacier forelands that are diagnostic of surge activity. We investigate the link between debris entrainment and proglacial geomorphology by analyzing basal ice, englacial structures, and ridge networks exposed at the margins of Tunabreen, a tidewater surge-type glacier in Svalbard. The basal ice facies display clear evidence for brittle and ductile tectonic deformation, resulting in overall thickening of the basal ice sequence. The formation of debris-poor dispersed facies ice is the result of strain-induced metamorphism of meteoric ice near the bed. Debris-rich englacial structures display a variety of characteristics and morphologies and are interpreted to represent the incorporation and elevation of subglacial till via the squeezing of till into basal crevasses and hydrofracture exploitation of thrust faults, reoriented crevasse squeezes, and preexisting fractures. These structures are observed to melt-out and form embryonic geometrical ridge networks at the base of a terrestrially grounded ice cliff. Ridge networks are also located at the terrestrial margins of Tunabreen, neighboring Von Postbreen, and in a submarine position within Tempelfjorden. Analysis of network characteristics allows these ridges to be linked to different formational mechanisms of their parent debris-rich englacial structures. This in turn provides an insight into variations in the dominant tectonic stress regimes acting across the glacier during surges.

  20. Altered streamflow and sediment entrainment in the Gunnison Gorge

    USGS Publications Warehouse

    Elliott, J.G.; Parker, R.S.

    1997-01-01

    The Gunnison River in the Gunnison Gorge is a canyon river where upstream dams regulate mainstem discharge but do not affect debris-flow sediment supply from tributaries entering below the reservoirs. Regulation since 1966 has altered flood frequency, streambed mobility, and fluvial geomorphology creating potential resource-management issues. The duration of moderate streamflows between 32.3 and 85.0 m3/s has increased threefold since 1966. This, along with flood-peak attenuation, has facilitated fine-sediment deposition and vegetation encroachment on stream banks. The Shields equation and on-site channel geometry and bed-material measurements were used to assess changes in sediment entrainment in four alluvial reaches. Sand and fine gravel are transported through riffle/pool reaches at most discharges, but the cobbles and boulders composing the streambed in many reaches now are infrequently entrained. Periodic debris flows add coarse sediment to rapids and can increase pool elevation and the streambed area affected by backwater and fine-sediment accumulation. Debris-flow supplied boulders accumulate on fans and in rapids and constrict the channel until reworked by larger floods. The response to streamflow-regime changes in the Gunnison Gorge could serve as an analog for alluvial reaches in other regulated canyon rivers.

  1. Colloidal quantum dots entrained in microstructured optical fibers

    NASA Astrophysics Data System (ADS)

    Holton, Carvel E.; Meissner, Kenith E.; Herz, Erik; Kominsky, Daniel; Pickrell, Gary R.

    2004-06-01

    We present the initial results of entraining colloidal quantum dots emitting at wavelengths from 0.5um through 1.2um, in various micro-structured optical fibers. Conventional and non-conventional, micro-structured optical fibers fabricated at Virginia Tech"s Fiber & ElectroOptics Research Center (FEORC) have been combined with semiconductor, colloidal quantum dots fabricated by the VT Advanced Biomedical Center (VTabc). The results are presented primarily in the form of visual verification and analysis of entrainment phenomena, for a cross-section of colloidal dot and micro-structured fiber forms. Unique optical, electro-optical and material properties resulting from the combinations are visibly suggested in the results. Core/clad/free space propagation properties and effects of emitted and absorbed light fields are observed to be dependent on the structure, aspect ratio and materials of the fibers as well as the properties of the colloidal quantum dots. Basic spectral data on representative free-space materials will be presented in the current paper. The presentation will explore in passing, the research options available to such quantum dot-fiber combinations, including advanced sensors, sources and filters.

  2. Experimental studies on an air-air jet exhaust pump

    SciTech Connect

    Chou, S.K.

    1986-01-01

    Industrial ventilation employing an air-air jet exhaust pump connected to a compressed-air line was investigated. The motive air supply pressure was maintained between 2 and 3 bar. A unique ejector housing was constructed to receive both the convergent-divergent primary nozzle and the mixing chamber. The entire unit adapts readily to any existing compressed-air system. The mixing chamber was so constructed that the length of its cylindrical section may be changed. Pressure variations along the mixing chamber were recorded, and this offered a valuable appreciation of the effects of the length-to-diameter ratios. Results indicate the influence of the supply air pressure and pressure ratio on the jet entrainment capacity and efficiency. It has also been shown that the present design is capable of achieving the maximum reported jet-pump efficiency of around 25% corresponding to a nozzle-to-mixing chamber area ratio of 0.15.

  3. Investigation of entrainment and thermal properties of a cryogenic dense-gas cloud using optical measurement techniques.

    PubMed

    Kunsch, J P; Rösgen, T

    2006-09-01

    Cryogenic dense-gas clouds have been investigated in a heavy-gas channel under controlled source and ambient conditions. Advantage is taken from new, non-intrusive optical measurement techniques (e.g. image correlation velocimetry, ICV, and background oriented Schlieren, BOS) providing detailed pictures of the temperature and velocity field in relevant regions of the cloud. The ice particles in the cloud, formed by nucleation, represent a natural seeding to be used as tracers, which have the advantage of behaving passively. Two layers can be identified in a cryogenic gas cloud: a lower cold layer, which is visible due to the presence of ice particles, and an invisible upper layer, where the ice particles have melted, mostly due to heat addition by air entrainment into the upper layer. A two-layer model has been applied to a generic element of the cloud, where detailed experimental data regarding velocity and temperature are available. Thermal- and dilution behaviour can be interpreted by means of the model which is presented in detail. A global entrainment parameter is deduced allowing a simple comparison with existing experimental information obtained by other traditional experimental techniques. The numerical values of the present entrainment parameter agree well with the correlations proposed by other authors. Thermal effects, such as heat transfer from the ground, appear to be very important. In addition, the visible height of the cloud can be predicted in relative good agreement with the experimental observations, by means of a thermal balance including the phase transition of the ice particles. PMID:16621256

  4. Combined air and water pollution control system

    NASA Technical Reports Server (NTRS)

    Wolverton, Billy C. (Inventor); Jarrell, Lamont (Inventor)

    1990-01-01

    A bioaquatic air pollution control system for controlling both water and atmospheric pollution is disclosed. The pollution control system includes an exhaust for directing polluted gases out of a furnace and a fluid circulating system which circulates fluid, such as waste water, from a source, past the furnace where the fluid flow entrains the pollutants from the furnace. The combined fluid and pollutants are then directed through a rock/plant/microbial filtering system. A suction pump pumps the treated waste water from the filter system past the exhaust to again entrain more pollutants from the furnace where they are combined with the fluid (waste water) and directed to the filter system.

  5. Basal entrainment by Newtonian gravity-driven flows

    NASA Astrophysics Data System (ADS)

    Bates, Belinda; Andreini, Nicolas; Ancey, Christophe

    2016-04-01

    Gravity-driven flows can erode the bed along which they descend and increase their mass by a factor of 10 or more. This process is called basal entrainment. Although documented by field observations and laboratory experiments, it remains poorly understood. We look into this issue by studying eroding dam-break waves. More specifically we would like to determine what happens when a viscous gravity-driven flow generated by releasing a fixed volume of incompressible Newtonian fluid encounters a stationary erodible layer (composed of fluid with the same density and viscosity). Models based on depth-averaged mass and momentum balance equations deal with bed-flow interfaces as shock waves. In contrast, we use an approach involving the long-wave approximation of the Navier-Stokes equations (lubrication theory), and in this context, bed-flow interfaces are acceleration waves that move quickly across thin stationary layers. The incoming flow digs down into the bed, pushing up downstream material, thus advancing the flow front. Extending the method used by Huppert [J. Fluid Mech. 121, 43--58 (1982)] for modelling viscous dam-break waves, we end up with a nonlinear diffusion equation for the flow depth, which is solved numerically. Theory is compared with experimental results. Excellent agreement is found in the limit of low Reynolds numbers (i.e., for flow Reynolds numbers lower than 20) for the front position over time and flow depth profile. The Newtonian model has sometimes been used to describe the flow behaviour of natural materials such as snow and debris suspensions, but the majority of existing approaches rely on more elaborate constitutive equations. So there is no direct application of the results presented here to real flow conditions. Yet, our study sheds light on the mechanisms involved in basal entrainment. We provide evidence that the whole layer of loose material is entrained quickly once the flow makes contact with the erodible layer. As this process occurs

  6. Photic Resetting and Entrainment in CLOCK-Deficient Mice

    PubMed Central

    Dallmann, Robert; DeBruyne, Jason P.; Weaver, David R.

    2012-01-01

    Mice lacking CLOCK protein have a relatively subtle circadian phenotype, including a slightly shorter period in constant darkness, differences in phase resetting after 4-hr light pulses in the early and late night, and a variably advanced phase angle of entrainment in a light-dark (LD) cycle (DeBruyne et al., Neuron 50:465–477, 2006). The present series of experiments was conducted to more fully characterize the circadian phenotype of Clock−/− mice under various lighting conditions. A phase-response curve (PRC) to 4-hour light pulses in free-running mice was conducted; the results confirm that Clock−/− mice exhibit very large phase advances after 4 hrs light pulses in the late subjective night, but have relatively normal responses to light at other phases. The abnormal shape of the PRC to light may explain the tendency of CLOCK-deficient mice to begin activity before lights-out when housed in a 12 hrs light: 12 hrs dark lighting schedule. To assess this relationship further, Clock−/− and wild-type control mice were entrained to skeleton lighting cycles (1L:23D, and 1L:10D:1L:12D). Comparing entrainment under the two types of skeleton photoperiods revealed that exposure to 1 hr light in the morning leads to a phase advance of activity onset (expressed the following afternoon) in Clock−/− mice, but not in the controls. Constant light typically causes an intensity-dependent increase in circadian period in mice, but this did not occur in CLOCK-deficient mice. The failure of Clock−/− mice to respond to the period-lengthening effect of constant light likely results from the increased functional impact of light falling in the phase advance zone of the PRC. Collectively, these experiments reveal that alterations in the response of CLOCK-deficient mice to light in several paradigms are likely due to an imbalance in the shape of the PRC to light. PMID:21921293

  7. Entrainment and Mixing of the Faroe Bank Channel Overflow

    NASA Astrophysics Data System (ADS)

    Fer, Ilker

    2010-05-01

    The continuous, swift flow of cold water over the sill of the Faroe Bank Channel, the deepest passage from the Nordic Seas to the North Atlantic Ocean, contributes to the ventilation of the deep North Atlantic Ocean. The amount of bulk entrainment and mixing of the overflow along its path was previously estimated from coarsely spaced currentmeters and water-mass considerations; however remain poorly constrained. The spatial distribution of mixing remains unknown due to lack of direct measurements. Here we report from the first direct turbulence measurements conducted in June 2008, supplemented by moored observations. The shipboard survey covers the first 120 km downstream of the sill, and includes vertical profiles of hydrography and velocity (from a conductivity-temperature-depth package equipped with lowered-acoustic Doppler current profilers), and of turbulent dissipation rate from a vertical microstructure profiler (Rockland Sci. Int.). The dynamic properties and mixing of the overflow plume as it descends toward the Iceland Basin are described. The plume has a vertical structure composed of a 70 ± 35 m thick well-mixed bottom layer overlaid by a 120 ± 60 m thick stratified interfacial layer. The vigorously turbulent plume is associated with intense mixing and enhanced turbulent dissipation near the bottom and at the plume-ambient interface, but with a quiescent core. The latter is due to weak shear production of turbulent kinetic energy near the velocity maximum, located typically deeper than the interface. Enhanced mixing at the stratified and highly-sheared interface is mostly due to coexisting shear instabilities and internal wave-turbulence transition. Entrainment velocity inferred from dissipation measurements show strong lateral variability. A pronounced transverse circulation is observed consistent with rotating plume dynamics. The transverse circulation actively dilutes the bottom layer of the plume. The bulk entrainment parameterizations mainly

  8. Non-parametric entrainment by natural twilight in the microchiropteran bat, Hipposideros speoris inside a cave.

    PubMed

    Joshi, D S; Vanlalnghaka, C

    2005-01-01

    The study aimed to determine the influence of repeated natural dawn and dusk twilight pulses in entraining the circadian flight activity rhythm of the microchiropteran bat, Hipposideros speoris, free-running in constant darkness in a natural cave. The bats were exposed to repeated dawn or dusk twilight pulses at eight circadian phases. All bats exposed to dawn twilight pulses were entrained by advancing transients, and the stable entrainment was reached when the onset of activity occurred about 12 h before the lights-on of the pulses, irrespective of the initial phase at which the bats were exposed to twilight. All bats exposed to dusk twilight pulses, however, were entrained by delaying transients, and the stable entrainment was reached when the onset of activity occurred about 1.6 h after the lights-on of the pulses. The entrainment caused by dawn and dusk twilight pulses is discussed in the context of the postulated two photoreceptors: the short wavelength sensitive (S) photoreceptors mediating entrainment via dusk twilight, and the medium wavelength sensitive (M) photoreceptors mediating entrainment via dawn twilight. PMID:16147895

  9. The Role of High-Level Processes for Oscillatory Phase Entrainment to Speech Sound

    PubMed Central

    Zoefel, Benedikt; VanRullen, Rufin

    2015-01-01

    Constantly bombarded with input, the brain has the need to filter out relevant information while ignoring the irrelevant rest. A powerful tool may be represented by neural oscillations which entrain their high-excitability phase to important input while their low-excitability phase attenuates irrelevant information. Indeed, the alignment between brain oscillations and speech improves intelligibility and helps dissociating speakers during a “cocktail party”. Although well-investigated, the contribution of low- and high-level processes to phase entrainment to speech sound has only recently begun to be understood. Here, we review those findings, and concentrate on three main results: (1) Phase entrainment to speech sound is modulated by attention or predictions, likely supported by top-down signals and indicating higher-level processes involved in the brain’s adjustment to speech. (2) As phase entrainment to speech can be observed without systematic fluctuations in sound amplitude or spectral content, it does not only reflect a passive steady-state “ringing” of the cochlea, but entails a higher-level process. (3) The role of intelligibility for phase entrainment is debated. Recent results suggest that intelligibility modulates the behavioral consequences of entrainment, rather than directly affecting the strength of entrainment in auditory regions. We conclude that phase entrainment to speech reflects a sophisticated mechanism: several high-level processes interact to optimally align neural oscillations with predicted events of high relevance, even when they are hidden in a continuous stream of background noise. PMID:26696863

  10. LIDAR OBSERVATIONS OF MIXED LAYER DYNAMICS: TESTS OF PARAMETERIZED ENTRAINMENT MODELS OF MIXED LAYER GROWTH RATE

    EPA Science Inventory

    Lidar measurements of the atmospheric boundary layer height, the entrainment zone, wind speed and direction, ancillary temperature profiles and surface flux data were used to test current parameterized entrainment models of mixed layer growth rate. Six case studies under clear ai...

  11. The Role of High-Level Processes for Oscillatory Phase Entrainment to Speech Sound.

    PubMed

    Zoefel, Benedikt; VanRullen, Rufin

    2015-01-01

    Constantly bombarded with input, the brain has the need to filter out relevant information while ignoring the irrelevant rest. A powerful tool may be represented by neural oscillations which entrain their high-excitability phase to important input while their low-excitability phase attenuates irrelevant information. Indeed, the alignment between brain oscillations and speech improves intelligibility and helps dissociating speakers during a "cocktail party". Although well-investigated, the contribution of low- and high-level processes to phase entrainment to speech sound has only recently begun to be understood. Here, we review those findings, and concentrate on three main results: (1) Phase entrainment to speech sound is modulated by attention or predictions, likely supported by top-down signals and indicating higher-level processes involved in the brain's adjustment to speech. (2) As phase entrainment to speech can be observed without systematic fluctuations in sound amplitude or spectral content, it does not only reflect a passive steady-state "ringing" of the cochlea, but entails a higher-level process. (3) The role of intelligibility for phase entrainment is debated. Recent results suggest that intelligibility modulates the behavioral consequences of entrainment, rather than directly affecting the strength of entrainment in auditory regions. We conclude that phase entrainment to speech reflects a sophisticated mechanism: several high-level processes interact to optimally align neural oscillations with predicted events of high relevance, even when they are hidden in a continuous stream of background noise. PMID:26696863

  12. Determination of human EEG alpha entrainment ERD/ERS using the continuous complex wavelet transform

    NASA Astrophysics Data System (ADS)

    Chorlian, David B.; Porjesz, Bernice; Begleiter, Henri

    2003-04-01

    Alpha entrainment caused by exposure to a background stimulus continuously flickering at a rate of 8 1/3 Hz was affected by the appearance of a foreground target stimulus to which the subjects were requested to press a button. With the use of bipolar derivations (to reduce volume conduction effects), scalp recorded EEG potentials were subjected to a continuous wavelet transform using complex Morlet wavelets at a range of scales. Complex Morlet wavelets were used to calculate efficiently instantaneous amplitudes and phases on a per-trial basis, rather than using the Hilbert transform on band-pass filtered data. Multiple scales were employed to contrast the pattern of alpha activity with those in other bands, and to determine whether the harmonics observed in the spectral analysis of the data were simply a result of the non-sinusoidal response to the entraining signal or a distinct neural phenomenon. We were thus able to calculate desynchronization/resynchronization for both the entrained and non-entrained alpha activity. The occurance of the target stimulus caused a sharp increase in amplitude in both the entrained and non-entrained alpha activity, followed by a sharp decrease, and then a return to baseline, over a period of 2.5 seconds. However, the entrained alpha activity showed a much more rapid recovery than non-entrained activity.

  13. The importance of entrainment and bulking on debris flow runout modeling: examples from the Swiss Alps

    NASA Astrophysics Data System (ADS)

    Frank, F.; McArdell, B. W.; Huggel, C.; Vieli, A.

    2015-11-01

    This study describes an investigation of channel-bed entrainment of sediment by debris flows. An entrainment model, developed using field data from debris flows at the Illgraben catchment, Switzerland, was incorporated into the existing RAMMS debris-flow model, which solves the 2-D shallow-water equations for granular flows. In the entrainment model, an empirical relationship between maximum shear stress and measured erosion is used to determine the maximum potential erosion depth. Additionally, the average rate of erosion, measured at the same field site, is used to constrain the erosion rate. The model predicts plausible erosion values in comparison with field data from highly erosive debris flow events at the Spreitgraben torrent channel, Switzerland in 2010, without any adjustment to the coefficients in the entrainment model. We find that by including bulking due to entrainment (e.g., by channel erosion) in runout models a more realistic flow pattern is produced than in simulations where entrainment is not included. In detail, simulations without entrainment show more lateral outflow from the channel where it has not been observed in the field. Therefore the entrainment model may be especially useful for practical applications such as hazard analysis and mapping, as well as scientific case studies of erosive debris flows.

  14. Emissions from vehicles, tailpipe and vehicle re-entrained road dust

    NASA Astrophysics Data System (ADS)

    Zhu, Dongzi

    Emissions from transportation are some of the largest sources of urban air pollution. Transportation emissions originate from both the engine-through combustion processes and non-tailpipe re-suspended road dust emissions induced by vehicle travel on unpaved and paved roads. Gaseous and particulate emissions from transportation sources have negative impacts on human health, visibility and may influence the global radiation balance. Fugitive dust emissions originating from vehicle travel on paved and unpaved roads constitute a significant fraction of the PM10 in many areas of the western US impacting their attainment status of National Ambient Air Quality Standards. The research used three novel instrument platforms developed at the Desert Research Institute. The In-Plume Emissions Test Stand (IPETS) was designed to provide characterization of exhaust emissions from in-use individual vehicles or engines by analyzing air as close as 1 m from the exhaust port. Real-world emission factors can be quantified by in-plume measurements and provide more realistic measures for emission inventories, source modeling, and receptor modeling than certification measurements. The Testing Re-entrained Aerosol Kinetic Emissions from Roads (TRAKER) provides an effective alternate approach to the EPA AP-42 road dust emissions estimation techniques by sampling 1000s of km of roads versus isolated 3 m sections. The Portable Deposition Monitoring Platform (PDMP incorporates PM and meteorological instruments to characterize the downwind change in particle concentrations to define depositional losses in different environments. The research outcome provides important knowledge for understanding diesel engine emissions, road dust emissions and aerosol deposition process near road sources.

  15. Venous air embolus during scalp incision.

    PubMed

    Spence, Nicole Z; Faloba, Kathryn; Sonabend, Adam M; Bruce, Jeffrey N; Anastasian, Zirka H

    2016-06-01

    Venous air embolism (VAE) is a known complication of sitting craniotomy. Clinical consequences of VAE can range from tachypnea to cardiovascular collapse. The entrainment of air typically occurs during bone work, but we describe a case in which a VAE was recognized while working on the scalp. Monitoring techniques are critical for early treatment of VAE to avoid more serious complications, and our case illustrates the need to implement monitors early and remain vigilant throughout the procedure. PMID:26765767

  16. Simulator Of Rain In Flowing Air

    NASA Technical Reports Server (NTRS)

    Clayton, Richard M.; Cho, Young I.; Shakkottai, Parthasarathy; Back, Lloyd H.

    1989-01-01

    Report describes relatively inexpensive apparatus that creates simulated precipitation from drizzle to heavy rain in flowing air. Small, positive-displacement pump and water-injecting device positioned at low-airspeed end of converging section of wind tunnel 10 in. in diameter. Drops injected by array entrained in flow of air as it accelerates toward narrower outlet, 15 in. downstream. Outlet 5 in. in diameter.

  17. Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation Channel

    SciTech Connect

    Pearson, Walter H.; Kohn, Nancy P.; Skalski, J. R.

    2006-09-30

    Proposed dredging of the Columbia River has raised concerns about related impacts on Dungeness crab in the Columbia River Estuary (CRE). This study follows two major efforts, sponsored by the Portland District of the U. S. Army Corps of Engineers (USACE) to quantify the number of crabs entrained by a hopper dredge working in the CRE. From June 2002 through September 2002, Pacific Northwest National Laboratory (PNNL) conducted direct measurements of crab entrainment in the CRE from the mouth of the Columbia River (MCR, river mile -3 to +3) upriver as far as Miller Sands (river mile 21 to 24). These studies constituted a major step in quantifying crab entrainment in the CRE, and allowed statistically bounded projections of adult equivalent loss (AEL) for Dungeness crab populations under a range of future construction dredging and maintenance dredging scenarios (Pearson et al. 2002, 2003). In 2004, PNNL performed additional measurements to improve estimates of crab entrainment at Desdemona Shoals and at Flavel Bar, a reach near Astoria that had not been adequately sampled in 2002 (Figure 1). The 2004 data were used to update the crab loss projections for channel construction to 43 ft MLLW. In addition, a correlation between bottom salinity and adult (age 2+ and 3+, >100 mm carapace width) crab entrainment was developed using 2002 data, and elaborated upon with the 2004 data. This crab salinity model was applied to forecasting seasonal (monthly) entrainment rates and AEL using seasonal variations in salinity (Pearson et al. 2005). In the previous studies, entrainment rates in Desdemona Shoals were more variable than in any of the other reaches. Pearson et al. (2005) concluded that ?the dynamics behind the variable entrainment rates at Desdemona Shoals are not fully understood,? as well as finding that juvenile crab entrainment was not significantly correlated with salinity as it was for older crab. The present study was undertaken to address the question of whether the

  18. Right Heart Vortex Entrainment Volume and Right Ventricular Diastolic Dysfunction

    NASA Astrophysics Data System (ADS)

    Browning, James; Hertzberg, Jean; Fenster, Brett; Schroeder, Joyce

    2014-11-01

    Recent advances in cardiac magnetic resonance imaging (CMR) have allowed for the 3-dimensional characterization of blood flow in the right ventricle (RV) and right atrium (RA). In this study, we investigate and quantify differences in the characteristics of coherent rotating flow structures (vortices) in the RA and RV between subjects with right ventricular diastolic dysfunction (RVDD) and normal controls. Fifteen RVDD subjects and 10 age-matched controls underwent same day 3D time resolved CMR and echocardiography. Echocardiography was used to determine RVDD stage as well as pulmonary artery systolic pressure (PASP). CMR data was used for RA and RV vortex quantification and visualization during early and late ventricular diastole. RA and RV vortex entrainment volume is quantified and visualized using the Lambda-2 criterion, and the results are compared between healthy subjects and those with RVDD. The resulting trends are discussed and hypotheses are presented regarding differences in vortex characteristics between healthy and RVDD subjects cohorts.

  19. Entrainment of heterogeneous glycolytic oscillations in single cells

    NASA Astrophysics Data System (ADS)

    Gustavsson, Anna-Karin; Adiels, Caroline B.; Mehlig, Bernhard; Goksör, Mattias

    2015-03-01

    Cell signaling, gene expression, and metabolism are affected by cell-cell heterogeneity and random changes in the environment. The effects of such fluctuations on cell signaling and gene expression have recently been studied intensively using single-cell experiments. In metabolism heterogeneity may be particularly important because it may affect synchronisation of metabolic oscillations, an important example of cell-cell communication. This synchronisation is notoriously difficult to describe theoretically as the example of glycolytic oscillations shows: neither is the mechanism of glycolytic synchronisation understood nor the role of cell-cell heterogeneity. To pin down the mechanism and to assess its robustness and universality we have experimentally investigated the entrainment of glycolytic oscillations in individual yeast cells by periodic external perturbations. We find that oscillatory cells synchronise through phase shifts and that the mechanism is insensitive to cell heterogeneity (robustness) and similar for different types of external perturbations (universality).

  20. Near-field entrainment in black smoker plumes

    NASA Astrophysics Data System (ADS)

    Smith, J. E.; Germanovich, L. N.; Lowell, R. P.

    2013-12-01

    In this work, we study the entrainment rate of the ambient fluid into a plume in the extreme conditions of hydrothermal venting at ocean floor depths that would be difficult to reproduce in the laboratory. Specifically, we investigate the flow regime in the lower parts of three black smoker plumes in the Main Endeavour Field on the Juan de Fuca Ridge discharging at temperatures of 249°C, 333°C, and 336°C and a pressure of 21 MPa. Such flow conditions are typical for ocean floor hydrothermal venting but would be difficult to reproduce in the laboratory. The centerline temperature was measured at several heights in the plume above the orifice. Using a previously developed turbine flow meter, we also measured the mean flow velocity at the orifice. Measurements were conducted during dives 4452 and 4518 on the submersible Alvin. Using these measurements, we obtained a range of 0.064 - 0.068 for values of the entrainment coefficient α, which is assumed constant near the orifice. This is half the value of α ≈ 0.12 - 0.13 that would be expected for plume flow regimes based on the existing laboratory results and field measurements in lower temperature and pressure conditions. In fact, α = 0.064 - 0.068 is even smaller than the value of α ≈ 0.075 characteristic of jet flow regimes and appears to be the lowest reported in the literature. Assuming that the mean value α = 0.066 is typical for hydrothermal venting at ocean floor depths, we then characterized the flow regimes of 63 black smoker plumes located on the Endeavor Segment of the Juan de Fuca Ridge. Work with the obtained data is ongoing, but current results indicate that approximately half of these black smokers are lazy in the sense that their plumes exhibit momentum deficits compared to the pure plume flow that develops as the plume rises. The remaining half produces forced plumes that show the momentum excess compared to the pure plumes. The lower value of the entrainment coefficient has important

  1. Low frequency entrainment of oscillatory bursts in hair cells.

    PubMed

    Shlomovitz, Roie; Fredrickson-Hemsing, Lea; Kao, Albert; Meenderink, Sebastiaan W F; Bruinsma, Robijn; Bozovic, Dolores

    2013-04-16

    Sensitivity of mechanical detection by the inner ear is dependent upon a highly nonlinear response to the applied stimulus. Here we show that a system of differential equations that support a subcritical Hopf bifurcation, with a feedback mechanism that tunes an internal control parameter, captures a wide range of experimental results. The proposed model reproduces the regime in which spontaneous hair bundle oscillations are bistable, with sporadic transitions between the oscillatory and the quiescent state. Furthermore, it is shown, both experimentally and theoretically, that the application of a high-amplitude stimulus to the bistable system can temporarily render it quiescent before recovery of the limit cycle oscillations. Finally, we demonstrate that the application of low-amplitude stimuli can entrain bundle motility either by mode-locking to the spontaneous oscillation or by mode-locking the transition between the quiescent and oscillatory states. PMID:23601313

  2. Low Frequency Entrainment of Oscillatory Bursts in Hair Cells

    PubMed Central

    Shlomovitz, Roie; Fredrickson-Hemsing, Lea; Kao, Albert; Meenderink, Sebastiaan W.F.; Bruinsma, Robijn; Bozovic, Dolores

    2013-01-01

    Sensitivity of mechanical detection by the inner ear is dependent upon a highly nonlinear response to the applied stimulus. Here we show that a system of differential equations that support a subcritical Hopf bifurcation, with a feedback mechanism that tunes an internal control parameter, captures a wide range of experimental results. The proposed model reproduces the regime in which spontaneous hair bundle oscillations are bistable, with sporadic transitions between the oscillatory and the quiescent state. Furthermore, it is shown, both experimentally and theoretically, that the application of a high-amplitude stimulus to the bistable system can temporarily render it quiescent before recovery of the limit cycle oscillations. Finally, we demonstrate that the application of low-amplitude stimuli can entrain bundle motility either by mode-locking to the spontaneous oscillation or by mode-locking the transition between the quiescent and oscillatory states. PMID:23601313

  3. Turbulent mixing and entrainment in a gravity current

    SciTech Connect

    Ecke, Robert E; Odier, Philippe; Chen, Jun

    2010-01-01

    We present an experimental study of the mixing processes in a gravity current. The turbulent transport of momentum and buoyancy can be described in a very direct and compact form by a Prandtl mixing length model: the turbulent vertical fluxes of momentum and buoyancy are found to scale quadratically with the vertical mean gradients of velocity and density. The scaling coefficient is the square of the mixing lenth, approximately constant over the mixing zone of the stratified shear layer. We show how, in different flow configurations, this length can be related to the shear length of the flow ({var_epsilon}/{partial_derivative}{sub z}u{sup 3}){sup 1/2}. We also study the fluctuations of the momentum and density turbulent fluxes, showing how they relate to the mixing phenomena, and to the entrainment/detrainment balance.

  4. Phase-selective entrainment of nonlinear oscillator ensembles

    NASA Astrophysics Data System (ADS)

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z.; Li-Shin, Jr.

    2016-03-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.

  5. Spontaneous tempo and rhythmic entrainment in a bonobo (Pan paniscus).

    PubMed

    Large, Edward W; Gray, Patricia M

    2015-11-01

    The emergence of speech and music in the human species represent major evolutionary transitions that enabled the use of complex, temporally structured acoustic signals to coordinate social interaction. While the fundamental capacity for temporal coordination with complex acoustic signals has been shown in a few distantly related species, the extent to which nonhuman primates exhibit sensitivity to auditory rhythms remains controversial. In Experiment 1, we assessed spontaneous motor tempo and tempo matching in a bonobo (Pan paniscus), in the context of a social drumming interaction. In Experiment 2, the bonobo spontaneously entrained and synchronized her drum strikes within a range around her spontaneous motor tempo. Our results are consistent with the hypothesis that the evolution of acoustic communication builds upon fundamental neurodynamic mechanisms that can be found in a wide range of species, and are recruited for social interactions. PMID:26147705

  6. Entrainment of Human Alpha Oscillations Selectively Enhances Visual Conjunction Search

    PubMed Central

    Müller, Notger G.; Vellage, Anne-Katrin; Heinze, Hans-Jochen; Zaehle, Tino

    2015-01-01

    The functional role of the alpha-rhythm which dominates the human electroencephalogram (EEG) is unclear. It has been related to visual processing, attentional selection and object coherence, respectively. Here we tested the interaction of alpha oscillations of the human brain with visual search tasks that differed in their attentional demands (pre-attentive vs. attentive) and also in the necessity to establish object coherence (conjunction vs. single feature). Between pre- and post-assessment elderly subjects received 20 min/d of repetitive transcranial alternating current stimulation (tACS) over the occipital cortex adjusted to their individual alpha frequency over five consecutive days. Compared to sham the entrained alpha oscillations led to a selective, set size independent improvement in the conjunction search task performance but not in the easy or in the hard feature search task. These findings suggest that cortical alpha oscillations play a specific role in establishing object coherence through suppression of distracting objects. PMID:26606255

  7. Phase-selective entrainment of nonlinear oscillator ensembles

    DOE PAGESBeta

    Zlotnik, Anatoly V.; Nagao, Raphael; Kiss, Istvan Z.; Li, Jr -Shin

    2016-03-18

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups intomore » spatiotemporal patterns with multiple phase clusters. As a result, the experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.« less

  8. Phase-selective entrainment of nonlinear oscillator ensembles

    PubMed Central

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z.; Li, Jr-Shin

    2016-01-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information. PMID:26988313

  9. Entrainment of Human Alpha Oscillations Selectively Enhances Visual Conjunction Search.

    PubMed

    Müller, Notger G; Vellage, Anne-Katrin; Heinze, Hans-Jochen; Zaehle, Tino

    2015-01-01

    The functional role of the alpha-rhythm which dominates the human electroencephalogram (EEG) is unclear. It has been related to visual processing, attentional selection and object coherence, respectively. Here we tested the interaction of alpha oscillations of the human brain with visual search tasks that differed in their attentional demands (pre-attentive vs. attentive) and also in the necessity to establish object coherence (conjunction vs. single feature). Between pre- and post-assessment elderly subjects received 20 min/d of repetitive transcranial alternating current stimulation (tACS) over the occipital cortex adjusted to their individual alpha frequency over five consecutive days. Compared to sham the entrained alpha oscillations led to a selective, set size independent improvement in the conjunction search task performance but not in the easy or in the hard feature search task. These findings suggest that cortical alpha oscillations play a specific role in establishing object coherence through suppression of distracting objects. PMID:26606255

  10. Phase-selective entrainment of nonlinear oscillator ensembles.

    PubMed

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z; Li, Jr-Shin

    2016-01-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information. PMID:26988313

  11. Experimental study of near-field entrainment of moderately overpressured jets

    USGS Publications Warehouse

    Solovitz, S.A.; Mastin, L.G.; Saffaraval, F.

    2011-01-01

    Particle image velocimetry (PIV) experiments have been conducted to study the velocity flow fields in the developing flow region of high-speed jets. These velocity distributions were examined to determine the entrained mass flow over a range of geometric and flow conditions, including overpressured cases up to an overpressure ratio of 2.83. In the region near the jet exit, all measured flows exhibited the same entrainment up until the location of the first shock when overpressured. Beyond this location, the entrainment was reduced with increasing overpressure ratio, falling to approximately 60 of the magnitudes seen when subsonic. Since entrainment ratios based on lower speed, subsonic results are typically used in one-dimensional volcanological models of plume development, the current analytical methods will underestimate the likelihood of column collapse. In addition, the concept of the entrainment ratio normalization is examined in detail, as several key assumptions in this methodology do not apply when overpressured.

  12. Isospin dependence of entrainment in superfluid neutron stars in a relativistic model

    NASA Astrophysics Data System (ADS)

    Kheto, Apurba; Bandyopadhyay, Debades

    2014-01-01

    We study the entrainment effect between superfluid neutrons and charge neutral fluid (called the proton fluid) which is made of protons and electrons in a neutron star interior within the two-fluid formalism and using a relativistic model where baryon-baryon interaction is mediated by the exchange of σ, ω, and ρ mesons. This model of strong interaction also includes scalar self-interactions. The entrainment matrix and entrainment parameter are calculated using the parameter sets of Glendenning (GL) and another non-linear (NL3) interaction. The inclusion of ρ mesons strongly influences the entrainment parameter (ɛmom) in a superfluid neutron star. The entrainment parameter is constant at the core and drops rapidly at the surface. It takes values within the physical range.

  13. How oil properties and layer thickness determine the entrainment of spilled surface oil.

    PubMed

    Zeinstra-Helfrich, Marieke; Koops, Wierd; Murk, Albertinka J

    2016-09-15

    Viscosity plays an important role in dispersion of spilled surface oil, so does adding chemical dispersants. For seven different oil grades, entrainment rate and initial droplet size distribution were investigated using a plunging jet apparatus with coupled camera equipment and subsequent image analysis. We found that amount of oil entrained is proportional to layer thickness and largely independent of oil properties: A dispersant dose of 1:200 did not result in a significantly different entrainment rate compared to no dispersants. Oil viscosity had a minor to no influence on entrainment rate, until a certain threshold above which entrainment was impeded. The mean droplet size scales with the modified Weber number as described by Johansen. The obtained results can help improve dispersion algorithms in oil spill fate and transport models, to aid making an informed decision about application of dispersants. PMID:27345705

  14. A neuropeptide speeds circadian entrainment by reducing intercellular synchrony

    PubMed Central

    An, Sungwon; Harang, Rich; Meeker, Kirsten; Granados-Fuentes, Daniel; Tsai, Connie A.; Mazuski, Cristina; Kim, Jihee; Doyle, Francis J.; Petzold, Linda R.; Herzog, Erik D.

    2013-01-01

    Shift work or transmeridian travel can desynchronize the body's circadian rhythms from local light–dark cycles. The mammalian suprachiasmatic nucleus (SCN) generates and entrains daily rhythms in physiology and behavior. Paradoxically, we found that vasoactive intestinal polypeptide (VIP), a neuropeptide implicated in synchrony among SCN cells, can also desynchronize them. The degree and duration of desynchronization among SCN neurons depended on both the phase and the dose of VIP. A model of the SCN consisting of coupled stochastic cells predicted both the phase- and the dose-dependent response to VIP and that the transient phase desynchronization, or “phase tumbling”, could arise from intrinsic, stochastic noise in small populations of key molecules (notably, Period mRNA near its daily minimum). The model also predicted that phase tumbling following brief VIP treatment would accelerate entrainment to shifted environmental cycles. We tested this using a prepulse of VIP during the day before a shift in either a light cycle in vivo or a temperature cycle in vitro. Although VIP during the day does not shift circadian rhythms, the VIP pretreatment approximately halved the time required for mice to reentrain to an 8-h shifted light schedule and for SCN cultures to reentrain to a 10-h shifted temperature cycle. We conclude that VIP below 100 nM synchronizes SCN cells and above 100 nM reduces synchrony in the SCN. We show that exploiting these mechanisms that transiently reduce cellular synchrony before a large shift in the schedule of daily environmental cues has the potential to reduce jet lag. PMID:24167276

  15. Ethanol consumption in mice: relationships with circadian period and entrainment

    PubMed Central

    Trujillo, Jennifer L.; Do, David T.; Grahame, Nicholas J.; Roberts, Amanda J.; Gorman, Michael R.

    2011-01-01

    A functional connection between the circadian timing system and alcohol consumption is suggested by multiple lines of converging evidence. Ethanol consumption perturbs physiological rhythms in hormone secretion, sleep and body temperature, and conversely, genetic and environmental perturbations of the circadian system can alter alcohol intake. A fundamental property of the circadian pacemaker, the endogenous period of its cycle under free-running conditions, was previously shown to differ between selectively bred High- (HAP) and Low- (LAP) Alcohol Preferring replicate 1 mice. To test whether there is a causal relationship between circadian period and ethanol intake, we induced experimental, rather than genetic, variations in free-running period. Male inbred C57Bl/6J mice and replicate 2 male and female HAP2 and LAP2 mice were entrained to light:dark cycles of 26 h or 22 h or remained in a standard 24 h cycle. Upon discontinuation of the light:dark cycle, experimental animals exhibited longer and shorter free-running periods, respectively. Despite robust effects on circadian period and clear circadian rhythms in drinking, these manipulations failed to alter the daily ethanol intake of the inbred strain or selected lines. Likewise, driving the circadian system at long and short periods produced no change in alcohol intake. In contrast with replicate 1 HAP and LAP lines, there was no difference in free-running period between ethanol naïve HAP2 and LAP2 mice. HAP2 mice, however, were significantly more active than LAP2 mice as measured by general home-cage movement and wheel running, a motivated behavior implicating a selection effect on reward systems. Despite a marked circadian regulation of drinking behavior, the free-running and entrained period of the circadian clock does not determine daily ethanol intake. PMID:20880659

  16. Ethanol consumption in mice: relationships with circadian period and entrainment.

    PubMed

    Trujillo, Jennifer L; Do, David T; Grahame, Nicholas J; Roberts, Amanda J; Gorman, Michael R

    2011-03-01

    A functional connection between the circadian timing system and alcohol consumption is suggested by multiple lines of converging evidence. Ethanol consumption perturbs physiological rhythms in hormone secretion, sleep, and body temperature; and conversely, genetic and environmental perturbations of the circadian system can alter alcohol intake. A fundamental property of the circadian pacemaker, the endogenous period of its cycle under free-running conditions, was previously shown to differ between selectively bred high- (HAP) and low- (LAP) alcohol preferring replicate 1 mice. To test whether there is a causal relationship between circadian period and ethanol intake, we induced experimental, rather than genetic, variations in free-running period. Male inbred C57Bl/6J mice and replicate 2 male and female HAP2 and LAP2 mice were entrained to light:dark cycles of 26 or 22 h or remained in a standard 24 h cycle. On discontinuation of the light:dark cycle, experimental animals exhibited longer and shorter free-running periods, respectively. Despite robust effects on circadian period and clear circadian rhythms in drinking, these manipulations failed to alter the daily ethanol intake of the inbred strain or selected lines. Likewise, driving the circadian system at long and short periods produced no change in alcohol intake. In contrast with replicate 1 HAP and LAP lines, there was no difference in free-running period between ethanol naïve HAP2 and LAP2 mice. HAP2 mice, however, were significantly more active than LAP2 mice as measured by general home-cage movement and wheel running, a motivated behavior implicating a selection effect on reward systems. Despite a marked circadian regulation of drinking behavior, the free-running and entrained period of the circadian clock does not determine daily ethanol intake. PMID:20880659

  17. Out-of-synchrony speech entrainment in developmental dyslexia.

    PubMed

    Molinaro, Nicola; Lizarazu, Mikel; Lallier, Marie; Bourguignon, Mathieu; Carreiras, Manuel

    2016-08-01

    Developmental dyslexia is a reading disorder often characterized by reduced awareness of speech units. Whether the neural source of this phonological disorder in dyslexic readers results from the malfunctioning of the primary auditory system or damaged feedback communication between higher-order phonological regions (i.e., left inferior frontal regions) and the auditory cortex is still under dispute. Here we recorded magnetoencephalographic (MEG) signals from 20 dyslexic readers and 20 age-matched controls while they were listening to ∼10-s-long spoken sentences. Compared to controls, dyslexic readers had (1) an impaired neural entrainment to speech in the delta band (0.5-1 Hz); (2) a reduced delta synchronization in both the right auditory cortex and the left inferior frontal gyrus; and (3) an impaired feedforward functional coupling between neural oscillations in the right auditory cortex and the left inferior frontal regions. This shows that during speech listening, individuals with developmental dyslexia present reduced neural synchrony to low-frequency speech oscillations in primary auditory regions that hinders higher-order speech processing steps. The present findings, thus, strengthen proposals assuming that improper low-frequency acoustic entrainment affects speech sampling. This low speech-brain synchronization has the strong potential to cause severe consequences for both phonological and reading skills. Interestingly, the reduced speech-brain synchronization in dyslexic readers compared to normal readers (and its higher-order consequences across the speech processing network) appears preserved through the development from childhood to adulthood. Thus, the evaluation of speech-brain synchronization could possibly serve as a diagnostic tool for early detection of children at risk of dyslexia. Hum Brain Mapp 37:2767-2783, 2016. © 2016 Wiley Periodicals, Inc. PMID:27061643

  18. Circadian rhythm in larval release by the crab Rhithropanopeus harrisii: entrainment model.

    PubMed

    Forward, Richard B; Moeller, Bianca P; Cohen, Jonathan H

    2014-04-01

    The subtidal crab Rhithropanopeus harrisii has a circadian rhythm in larval release; under constant conditions eggs hatch in the 2-3-h interval after the time of sunset in nontidal estuaries. Eggs that are removed from the female hatch rhythmically, indicating that the circadian rhythm resides in the embryos. The model for entrainment is that mature embryos have functional sensory systems that detect and entrain to environmental cycles. This model was reexamined by confirming that the visual system of advanced embryos responds to light and thus could mediate entrainment to the light/dark cycle. We then determined whether the hatching rhythm of mature embryos that are removed from the female can be entrained to new light/dark cycles. Contrary to expectations, these embryos did not entrain to new cycles. Instead, they remained entrained to the light/dark cycle to which they were exposed when still attached to the female, suggesting that the female entrains the rhythm. Indeed, hatching by embryos collected from the field when they had not yet developed eye pigments, kept in constant conditions attached to their mother, exhibited the circadian hatching rhythm. They could also be entrained to a new photoperiod in the laboratory. The role of the female is further supported by experiments showing that the hatching rhythm in embryos carried by females lacking one but not both eyes can be entrained to a new cycle in the laboratory. Thus, the revised model is that the female perceives the light/dark cycle and entrains the circadian rhythm in the embryos. PMID:24797091

  19. The performative pleasure of imprecision: a diachronic study of entrainment in music performance.

    PubMed

    Geeves, Andrew; McIlwain, Doris J; Sutton, John

    2014-01-01

    This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance. PMID:25400567

  20. The performative pleasure of imprecision: a diachronic study of entrainment in music performance

    PubMed Central

    Geeves, Andrew; McIlwain, Doris J.; Sutton, John

    2014-01-01

    This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance. PMID:25400567

  1. Ethnic-Difference Markers for Use in Mapping by Admixture Linkage Disequilibrium

    PubMed Central

    Collins-Schramm, Heather E.; Phillips, Carolyn M.; Operario, Darwin J.; Lee, Jane S.; Weber, James L.; Hanson, Robert L.; Knowler, William C.; Cooper, Richard; Li, Hongzhe; Seldin, Michael F.

    2002-01-01

    Mapping by admixture linkage disequilibrium (MALD) is a potentially powerful technique for the mapping of complex genetic diseases. The practical requirements of this method include (a) a set of markers spanning the genome that have large allele-frequency differences between the parental ethnicities contributing to the admixed population and (b) an understanding of the extent of admixture in the study population. To this end, a DNA-pooling technique was used to screen microsatellite and diallelic insertion/deletion markers for allele-frequency differences between putative representatives of the parental populations of the admixed Mexican American (MA) and African American (AA) populations. Markers with promising pooled differences were then confirmed by individual genotyping in both the parental and admixed populations. For the MA population, screening of >600 markers identified 151 ethnic-difference markers (EDMs) with δ>0.30 (where δ is the absolute value of each allele-frequency difference between two populations, summed over all marker alleles and divided by two) that are likely to be useful for MALD analysis. For the AA population, analysis of >400 markers identified 97 EDMs. In addition, individual genotyping of these markers in Pima Amerindians, Yavapai Amerindians, European American (EA) individuals, Africans from Zimbabwe, MA individuals, and AA individuals, as well as comparison to the CEPH genotyping set, suggests that the differences between subpopulations of an ethnicity are small for many markers with large interethnic differences. Estimates of admixture that are based on individual genotyping of these markers are consistent with a 60% EA:40% Amerindian contribution to MA populations and with a 20% EA:80% African contribution to AA populations. Taken together, these data suggest that EDMs with large interpopulation and small intrapopulation differences can be readily identified for MALD studies in both AA and MA populations. PMID:11845411

  2. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

    PubMed

    Miller, Webb; Schuster, Stephan C; Welch, Andreanna J; Ratan, Aakrosh; Bedoya-Reina, Oscar C; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C; Drautz, Daniela I; Wittekindt, Nicola E; Tomsho, Lynn P; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K; Rode, Karyn; Obbard, Martyn; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Olafur; Aars, Jon; Mailund, Thomas; Wiig, Oystein; Talbot, Sandra L; Lindqvist, Charlotte

    2012-09-01

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5-10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture. We also provide paleodemographic estimates that suggest bear evolution has tracked key climate events, and that PB in particular experienced a prolonged and dramatic decline in its effective population size during the last ca. 500,000 years. We demonstrate that brown bears and PBs have had sufficiently independent evolutionary histories over the last 4-5 million years to leave imprints in the PB nuclear genome that likely are associated with ecological adaptation to the Arctic environment. PMID:22826254

  3. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

    USGS Publications Warehouse

    Miller, Webb; Schuster, Stephan C.; Welch, Andreanna J.; Ratan, Aakrosh; Bedoya-Reina, Oscar C.; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C.; Drautz, Daniela I.; Wittekindt, Nicola E.; Tomsho, Lynn P.; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K.; Rode, Karyn; Obbard, Martyn E.; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Ólafur; Aars, Jon; Mailund, Thomas; Wiig, Øystein; Talbot, Sandra L.; Lindqvist, Charlotte

    2012-01-01

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5–10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture. We also provide paleodemographic estimates that suggest bear evolution has tracked key climate events, and that PB in particular experienced a prolonged and dramatic decline in its effective population size during the last ca. 500,000 years. We demonstrate that brown bears and PBs have had sufficiently independent evolutionary histories over the last 4–5 million years to leave imprints in the PB nuclear genome that likely are associated with ecological adaptation to the Arctic environment.

  4. Reduced bleed air extraction for DC-10 cabin air conditioning

    NASA Technical Reports Server (NTRS)

    Newman, W. H.; Viele, M. R.; Hrach, F. J.

    1980-01-01

    It is noted that a significant fuel savings can be achieved by reducing bleed air used for cabin air conditioning. Air in the cabin can be recirculated to maintain comfortable ventilation rates but the quality of the air tends to decrease due to entrainment of smoke and odors. Attention is given to a development system designed and fabricated under the NASA Engine Component Improvement Program to define the recirculation limit for the DC-10. It is shown that with the system, a wide range of bleed air reductions and recirculation rates is possible. A goal of 0.8% fuel savings has been achieved which results from a 50% reduction in bleed extraction from the engine.

  5. Admixture patterns and genetic differentiation in negrito groups from West Malaysia estimated from genome-wide SNP data.

    PubMed

    Jinam, Timothy A; Phipps, Maude E; Saitou, Naruya

    2013-01-01

    Southeast Asia houses various culturally and linguistically diverse ethnic groups. In Malaysia, where the Malay, Chinese, and Indian ethnic groups form the majority, there exist minority groups such as the "negritos" who are believed to be descendants of the earliest settlers of Southeast Asia. Here we report patterns of genetic substructure and admixture in two Malaysian negrito populations (Jehai and Kensiu), using ~50,000 genome-wide single-nucleotide polymorphism (SNP) data. We found traces of recent admixture in both the negrito populations, particularly in the Jehai, with the Malay through principal component analysis and STRUCTURE analysis software, which suggested that the admixture was as recent as one generation ago. We also identified significantly differentiated nonsynonymous SNPs and haplotype blocks related to intracellular transport, metabolic processes, and detection of stimulus. These results highlight the different levels of admixture experienced by the two Malaysian negritos. Delineating admixture and differentiated genomic regions should be of importance in designing and interpretation of molecular anthropology and disease association studies. PMID:24297225

  6. Dyslipidemia and insulin resistance in relation to genetic admixture among Hispanics and non-Hispanic blacks of Caribbean origin.

    PubMed Central

    Tull, Eugene S.; Thurland, Ann

    2004-01-01

    The tendency to develop insulin resistance and dyslipidemia varies between black Africans, white Europeans, and Amerindian racial groups. Genetic admixture of these three racial groups has resulted in hybrid populations of Hispanics and non-Hispanic blacks. The current study was undertaken to examine the relationship of white European admixture to insulin resistance and dyslipidemia among Hispanics and non-Hispanic blacks of Caribbean origin. The study population included 224 Hispanics and 684 non-Hispanic blacks without a history of diabetes who were recruited between 1995 and 1999 on the island of St. Croix in the U.S. Virgin Islands. For each participant, anthropometric measurements were performed, and a fasting blood sample was analyzed for glucose, insulin, and serum lipids (triglycerides, HDL cholesterol). Genetic admixture was determined from grandparent race data. Hispanics were more likely than non-Hispanic blacks to have dyslipidemia and insulin resistance (measured by HOMA-IR method). White European admixture was significantly and inversely associated with insulin resistance among Hispanics. There was no significant relationship between white European admixture and insulin resistance or dyslipidemia among non-Hispanic blacks. Individuals who classified themselves as Hispanic blacks appeared to have a greater risk for cardiovascular disease than Hispanic whites or non-Hispanic blacks. Images Figure 1 Figure 2 PMID:15040515

  7. Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture.

    PubMed

    Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C; Ambrosone, Christine B; Amos, Christopher; Bandera, Elisa V; Berndt, Sonja I; Bernstein, Leslie; Blot, William J; Bock, Cathryn H; Caporaso, Neil; Casey, Graham; Deming, Sandra L; Diver, W Ryan; Gapstur, Susan M; Gillanders, Elizabeth M; Harris, Curtis C; Henderson, Brian E; Ingles, Sue A; Isaacs, William; De Jager, Phillip L; John, Esther M; Kittles, Rick A; Larkin, Emma; McNeill, Lorna H; Millikan, Robert C; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F; Rodriguez-Gil, Jorge L; Rybicki, Benjamin A; Schwartz, Ann G; Signorello, Lisa B; Spitz, Margaret; Strom, Sara S; Tucker, Margaret A; Wiencke, John K; Witte, John S; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A; Zheng, Wei; Ziegler, Regina G; Chanock, Stephen J; Haiman, Christopher A; Reich, David; Price, Alkes L

    2014-10-01

    The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study's conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas. PMID:25242497

  8. Flow Dynamics and Sediment Entrainment in Natural Turbidity Currents Inferred from Numerical Modeling

    NASA Astrophysics Data System (ADS)

    Traer, M. M.; Hilley, G. E.; Fildani, A.

    2009-12-01

    Submarine turbidity currents derive their momentum from gravity acting upon the density contrast between sediment-laden and clear water, and so unlike fluvial systems, the dynamics of such flows are inextricably linked to the rates at which they deposit and entrain sediment. We have analyzed the sensitivity of the growth and maintenance of turbidity currents to sediment entrainment and deposition using the layer-averaged equations of conservation of fluid and sediment mass, and conservation of momentum and turbulent kinetic energy. Our model results show that the dynamics of turbidity currents are extremely sensitive to the functional form and empirical constants of the relationship between sediment entrainment and friction velocity. Data on the relationship between sediment entrainment and friction velocity for submarine density flows are few and as a result, entrainment formulations are populated with data from sub-aerial flows not driven by the density contrast between clear and turbid water. If we entertain the possibility that sediment entrainment in sub-aerial rivers is different than in dense underflows, flow parameters such as velocity, height, and concentration were found nearly impossible to predict beyond a few hundred meters based on the limited laboratory data available that constrain the sediment entrainment process in turbidity currents. The sensitivity of flow dynamics to the functional relationship between friction velocity and sediment entrainment indicates that independent calibration of a sediment entrainment law in the submarine environment is necessary to realistically predict the dynamics of these flows and the resulting patterns of erosion and deposition. To calibrate such a relationship, we have developed an inverse methodology that utilizes existing submarine channel morphology as a means of constraining the sediment entrainment function parameters. We use a Bayesian Metropolis-Hastings sampler to determine the sediment entrainment

  9. On the pollutant removal, dispersion, and entrainment over two-dimensional idealized street canyons

    NASA Astrophysics Data System (ADS)

    Liu, Chun-Ho; Wong, Colman C. C.

    2014-01-01

    Pollutant dispersion over urban areas is not that well understood, in particular at the street canyon scale. This study is therefore conceived to examine how urban morphology modifies the pollutant removal, dispersion, and entrainment over urban areas. An idealized computational domain consisting of 12 two-dimensional (2D) identical street canyons of unity aspect ratio is employed. The large-eddy simulation (LES) is used to calculate the turbulent flows and pollutant transport in the urban boundary layer (UBL). An area source of uniform pollutant concentration is applied on the ground of the first street canyon. A close examination on the roof-level turbulence reveals patches of low-speed air masses in the streamwise flows and narrow high-speed downdrafts in the shear layer. Different from the flows over a smooth surface, the turbulence intensities are peaked near the top of the building roughness. The pollutant is rather uniformly distributed inside a street canyon but disperses quickly in the UBL over the buildings. Partitioning the vertical pollutant flux into its mean and turbulent components demystifies that the pollutant removal is mainly governed by turbulence. Whereas, mean wind carries pollutant into and out of a street canyon simultaneously. In addition to wind speed promotion, turbulent mixing is thus required to dilute the ground-level pollutants, which are then removed from the street canyon to the UBL. Atmospheric flows slow down rapidly after the leeward buildings, leading to updrafts carrying pollutants away from the street canyons (the basic pollutant removal mechanism).

  10. An investigation of admixture in an Australian Aboriginal Y-chromosome STR database.

    PubMed

    Taylor, Duncan; Nagle, Nano; Ballantyne, Kaye N; van Oorschot, Roland A H; Wilcox, Stephen; Henry, Julianne; Turakulov, Rust; Mitchell, R John

    2012-09-01

    Y-chromosome specific STR profiling is increasingly used in forensic casework. However, the strong geographic clustering of Y haplogroups can lead to large differences in Y-STR haplotype frequencies between different ethnicities, which may have an impact on database composition in admixed populations. Aboriginal people have inhabited Australia for over 40,000 years and until ∼300 years ago they lived in almost complete isolation. Since the late 18th century Australia has experienced massive immigration, mainly from Europe, although in recent times from more widespread origins. This colonisation resulted in highly asymmetrical admixture between the immigrants and the indigenes. A State jurisdiction within Australia has created an Aboriginal Y-STR database in which assignment of ethnicity was by self-declaration. This criterion means that some males who identify culturally as members of a particular ethnic group may have a Y haplogroup characteristic of another ethnic group, as a result of admixture in their paternal line. As this may be frequent in Australia, an examination of the extent of genetic admixture within the database was performed. A Y haplogroup predictor program was first used to identify Y haplotypes that could be assigned to a European haplogroup. Of the 757 males (589 unique haplotypes), 445 (58.8%) were identified as European (354 haplotypes). The 312 non-assigned males (235 haplotypes) were then typed, in a hierarchical fashion, with a Y-SNP panel that detected the major Y haplogroups, C-S, as well as the Aboriginal subgroup of C, C4. Among these 96 males were found to have non-Aboriginal haplogroups. In total, ∼70% of Y chromosomes in the Aboriginal database could be classed as non-indigenous, with only 169 (129 unique haplotypes) or 22% of the total being associated with haplogroups denoting Aboriginal ancestry, C4 and K* or more correctly K(xL,M,N,O,P,Q,R,S). The relative frequencies of these indigenous haplogroups in South Australia (S

  11. Effects of 2 mass % Si admixture in a laser-produced Fe plasma

    SciTech Connect

    Krasa, Josef; Laska, Leos; Rohlena, Karel; Velyhan, Andriy; Lorusso, Antonella; Nassisi, Vincenzo; Czarnecka, Agata; Parys, Piotr; Ryc, Leszek; Wolowski, Jerzy

    2008-11-10

    Emission of multiply charged ions and soft x-rays from the plasmas produced by laser pulses focused on (111) surface of Fe and Fe-2 mass % Si single crystals is investigated for wavelengths of 1064 and 248 nm and intensities up to {approx_equal}1x10{sup 10} W/cm{sup 2}. It is demonstrated that the Si admixture in the Fe plasma results in a higher emission of Fe{sup q+} ions (1{<=}q{<=}4) but in a markedly lower x-ray emission. The relation of wavelengths and pulse durations of laser beams used is figured in the fluence dependence of the ion emission.

  12. Mitochondrial DNA studies show asymmetrical Amerindian admixture in Afro-Colombian and Mestizo populations.

    PubMed

    Rodas, Clemencia; Gelvez, Nancy; Keyeux, Genoveva

    2003-02-01

    The origin of the African populations that arrived on the Colombian coasts at the time of the Spanish conquest and their subsequent settlement throughout the country and interaction with Amerindian and Spanish populations are features that can be analyzed through the study of mitochondrial DNA (mtDNA) markers. For this purpose, the present study investigates the admixture between these populations by analyzing the markers defining the main (A, B, C, D) and minor (X) founder haplogroups in Native Americans, the principal African haplogroup (L), and additional generic markers present in Caucasian (I, J, K, H, T, U, V, W) and minor African lineages (L3). As part of an interdisciplinary research program (the Expedición Humana, furthered by the Universidad Javeriana and directed by J.E. Bernal V.), 159 Afro-Colombians from five populations in which they are the majority and 91 urban Mestizos were studied. No Amerindian haplogroups (A-D, X) were detected in 81% of the Afro-Colombians. In those samples with Amerindian lineages (average 18.8%, with a range from 10% to 43%), haplogroup B predominated. When analyzed for the presence of African haplotypes, Afro-Colombians showed an overall frequency of 35.8% for haplogroup L mtDNAs, although with broad differences between populations. A few Afro-Colombian samples (1.9%) had mutations that have not been described before, and might therefore be considered as previously unsampled African variants or as new mutations arising in the American continent. Conversely, in Mestizos less than 22% of their mtDNAs belonged to non-Amerindian lineages, of which most were likely to be West Eurasian in origin. Haplogroup L mtDNAs were found in only one Mestizo (1.1%), indicating that, if present, admixture with African women would bring in other, rarer African lineages. On the other hand, in an accompanying paper (Keyeux et al. 2002) we have shown that Amerindians from Colombia have experienced little or no matrilineal admixture with

  13. Isolation with differentiation followed by expansion with admixture in the tunicate Pyura chilensis

    PubMed Central

    2013-01-01

    Background Pyura chilensis, a tunicate commercially exploited as food resource in Chile, is subject to management strategies, including restocking. The goal of this study was to examine the genetic structure of P. chilensis using information from a mitochondrial gene (Cytochrome Oxidase I, COI) and a nuclear gene (Elongation 1 alpha, EF1a), to characterize the geographic distribution of genetic diversity and differentiation, and to identify the main processes that have shaped it. We analyzed 268 and 208 sequences of COI and EF1a, respectively, from samples of eight local populations covering ca. 1800 km. Results For Pyura chilensis, partial sequences of the gene COI revealed three highly supported haplogroups that diverged 260000 to 470000 years ago. Two haplogroups currently are widely distributed and sympatric, while one is dominant only in Los Molinos (LM, 39°50′S). The two widespread COI haplogroups underwent a geographic expansion during an interglacial period of the Late Pleistocene ca. 100000 years ago. The nuclear gene was less divergent and did not resolve the COI haplogroups. Bayesian clustering of the nuclear gene’s SNPs revealed that individuals from the two widespread COI haplogroups were mostly assigned to two of the three detected clusters and had a marked degree of admixture. The third cluster predominated in LM and showed low admixture. Haplotypic diversity of both genes was very high, there was no isolation by distance, and most localities were genetically undifferentiated; only LM was consistently differentiated with both genes analyzed. Conclusions Pyura chilensis has less genetic structure than expected given its life history, which could be a consequence of dispersal on ship hulls. The only differentiated local population analyzed was LM. Coincidentally, it is the one furthest away from main maritime routes along the coast of Chile. The use of mitochondrial and nuclear markers allowed detection of divergent mitochondrial haplogroups in

  14. Neurobiological foundations of neurologic music therapy: rhythmic entrainment and the motor system

    PubMed Central

    Thaut, Michael H.; McIntosh, Gerald C.; Hoemberg, Volker

    2015-01-01

    Entrainment is defined by a temporal locking process in which one system’s motion or signal frequency entrains the frequency of another system. This process is a universal phenomenon that can be observed in physical (e.g., pendulum clocks) and biological systems (e.g., fire flies). However, entrainment can also be observed between human sensory and motor systems. The function of rhythmic entrainment in rehabilitative training and learning was established for the first time by Thaut and colleagues in several research studies in the early 1990s. It was shown that the inherent periodicity of auditory rhythmic patterns could entrain movement patterns in patients with movement disorders (see for a review: Thaut et al., 1999). Physiological, kinematic, and behavioral movement analysis showed very quickly that entrainment cues not only changed the timing of movement but also improved spatial and force parameters. Mathematical models have shown that anticipatory rhythmic templates as critical time constraints can result in the complete specification of the dynamics of a movement over the entire movement cycle, thereby optimizing motor planning and execution. Furthermore, temporal rhythmic entrainment has been successfully extended into applications in cognitive rehabilitation and speech and language rehabilitation, and thus become one of the major neurological mechanisms linking music and rhythm to brain rehabilitation. These findings provided a scientific basis for the development of neurologic music therapy. PMID:25774137

  15. Fish entrainment rates through towboat propellers in the Upper Mississippi and Illinois rivers

    USGS Publications Warehouse

    Jack, Killgore K.; Miranda, L.E.; Murphy, C.E.; Wolff, D.M.; Hoover, J.J.; Keevin, T.M.; Maynord, S.T.; Cornish, M.A.

    2011-01-01

    Aspecially designed netwas used to study fish entrainment and injury through towboat propellers in 13 pools of the Upper Mississippi and Illinois rivers. The net was attached to the stern of a 48.8-m-long towboat with twin propellers (in Kort propulsion nozzles), and sampling typically took place while the towboat pushed 15 loaded barges upstream at a time. In total, 254 entrainment samples over 894 km of the 13 study pools were collected. The sampling efforts produced 16,005 fish representing 15 families and at least 44 species; fish ranged in total length from 3 to 123 cm, but only 12.5-cm or longer fish were analyzed because smaller fish could escape through the mesh of the trawl. Clupeidae (68% of total catch) and Sciaenidae (21%) were the dominant families. We detected no effects of towboat operation variables (speed and engine [i.e., propeller] revolutions per minute [RPM]) on entrainment rate (i.e., fish/km), but entrainment rate showed a wedge-shaped distribution relative to hydraulic and geomorphic characteristics of the channel. Entrainment rate was low (30 fish/km). Although total entrainment rate was not related to engine RPM, the probability of being struck by a propeller increased with fish length and engine RPM. Limits on engine RPM in narrow, shallow, and sluggish reaches could reduce entrainment impact, particularly for large-bodied fish. ?? American Fisheries Society 2011.

  16. Marching along to an Offbeat Drum: Entrainment of Synthetic Gene Oscillators by a Noisy Stimulus.

    PubMed

    Butzin, Nicholas C; Hochendoner, Philip; Ogle, Curtis T; Hill, Paul; Mather, William H

    2016-02-19

    Modulation of biological oscillations by stimuli lies at the root of many phenomena, including maintenance of circadian rhythms, propagation of neural signals, and somitogenesis. While it is well established that regular periodic modulation can entrain an oscillator, an aperiodic (noisy) modulation can also robustly entrain oscillations. This latter scenario may describe, for instance, the effect of irregular weather patterns on circadian rhythms, or why irregular neural stimuli can still reliably transmit information. A synthetic gene oscillator approach has already proven to be useful in understanding the entrainment of biological oscillators by periodic signaling, mimicking the entrainment of a number of noisy oscillating systems. We similarly seek to use synthetic biology as a platform to understand how aperiodic signals can strongly correlate the behavior of cells. This study should lead to a deeper understanding of how fluctuations in our environment and even within our body may promote substantial synchrony among our cells. Specifically, we investigate experimentally and theoretically the entrainment of a synthetic gene oscillator in E. coli by a noisy stimulus. This phenomenon was experimentally studied and verified by a combination of microfluidics and microscopy using the real synthetic circuit. Stochastic simulation of an associated model further supports that the synthetic gene oscillator can be strongly entrained by aperiodic signals, especially telegraph noise. Finally, widespread applicability of aperiodic entrainment beyond the synthetic gene oscillator is supported by results derived from both a model for a natural oscillator in D. discoideum and a model for predator-prey oscillations. PMID:26524465

  17. Entrainment Across a Sheared Density Interface in High Richardson Number Cavity Flow

    NASA Astrophysics Data System (ADS)

    Williamson, Nicholas; Kirkpartick, Michael; Armfield, Steve

    2015-11-01

    The turbulent entrainment of fluid across a sharp density interface has been examined experimentally in a purging cavity flow. In the experiments, a long straight cavity with sloped entry and exit boundaries is located in the base of a straight open channel. Saline fluid is entrained from the cavity into the overflow. The cavity geometry has been designed to ensure there is no separation of the overflow in the cavity region with the goal of obtaining a single mode of entrainment, related only to the interface properties rather than to cavity specific mechanisms. The bulk entrainment rate has been measured and correlated with bulk Richardson number over Ri = 1 . 0 - 20 at Reynolds number Re = 7100 - 15100 . The entrainment rate is shown to scale with the local bulk Richardson number E ~= CRi - 1 . 38 , very close to the established result for entrainment across a sharp two layer density interface in a recirculating water channel (Strang and Fernando, J Fluid Mech., 428, 2001) but with an order of magnitude lower coefficient C. Experiments instrumented with PIV/LIF were used to relate the bulk Ri to the local gradient Richardson number of the interface. In the cavity setting the interface appears to remain sharper, resulting in larger Rig and reduced entrainment.

  18. Quadrupedal Locomotion-Respiration Entrainment and Metabolic Economy in Cross-Country Skiers.

    PubMed

    Boldt, Kevin; Killick, Anthony; Herzog, Walter

    2016-02-01

    A 1:1 locomotion-respiration entrainment is observed in galloping quadrupeds, and is thought to improve running economy. However, this has not been tested directly in animals, as animals cannot voluntarily disrupt this entrainment. The purpose of this study was to evaluate metabolic economy in a human gait involving all four limbs, cross-country skiing, in natural entrainment and forced nonentrainment. Nine elite cross-country skiers roller skied at constant speed using the 2-skate technique. In the first and last conditions, athletes used the natural entrained breathing pattern: inhaling with arm recovery and exhaling with arm propulsion, and in the second condition, the athletes disentrained their breathing pattern. The rate of oxygen uptake (VO2) and metabolic rate (MR) were measured via expired gas analysis. Propulsive forces were measured with instrumented skis and poles. VO2 and MR increased by 4% and 5% respectively when skiers used the disentrained compared with the entrained breathing pattern. There were no differences in ski or pole forces or in timing of the gait cycle between conditions. We conclude that breathing entrainment reduces metabolic cost of cross-country skiing by approximately 4%. Further, this reduction is likely a result of the entrainment rather than alterations in gait mechanics. PMID:26252735

  19. Fish and opossum shrimp entrainment in the Mt. Elbert Pumped-Storage Power Plant

    SciTech Connect

    Maiolie, M.A.

    1987-01-01

    Impacts of operating the Mt. Elbert Pumped-Storage Power Plant on fish and opossum shrimp (mysis relicta) were investigated from 1981 to 1985 at Twin Lakes, Colorado to determine any negative effects on the Twin Lakes fishery. Daytime generation cycles entrained shrimp at densities averaging 0.05 to 0.23 shrimp/m/sup 3/ of discharge. Eight hour daytime generation cycles would entrain 50,000 to 300,000 shrimp at these rates. Generation cycles which occurred after dark entrained many times more shrimp with densities as high as 1.21 shrimp/m/sup 3/ of discharge. Entrainment density during nighttime pump-back cycles was much greater; averaging 2 to 17 shrimp/m/sup 3/ discharged. Six to 44 million shrimp were entrained during typical 8 h pump-back cycles. Differences between daytime and nighttime entrainment rates appeared to be caused by migration of shrimp into the water column at night making them more vulnerable to entrainment. Losses were estimated to have reduced Lower Twin Lake shrimp abundance by 39% in 1985.

  20. Neurobiological foundations of neurologic music therapy: rhythmic entrainment and the motor system.

    PubMed

    Thaut, Michael H; McIntosh, Gerald C; Hoemberg, Volker

    2014-01-01

    Entrainment is defined by a temporal locking process in which one system's motion or signal frequency entrains the frequency of another system. This process is a universal phenomenon that can be observed in physical (e.g., pendulum clocks) and biological systems (e.g., fire flies). However, entrainment can also be observed between human sensory and motor systems. The function of rhythmic entrainment in rehabilitative training and learning was established for the first time by Thaut and colleagues in several research studies in the early 1990s. It was shown that the inherent periodicity of auditory rhythmic patterns could entrain movement patterns in patients with movement disorders (see for a review: Thaut et al., 1999). Physiological, kinematic, and behavioral movement analysis showed very quickly that entrainment cues not only changed the timing of movement but also improved spatial and force parameters. Mathematical models have shown that anticipatory rhythmic templates as critical time constraints can result in the complete specification of the dynamics of a movement over the entire movement cycle, thereby optimizing motor planning and execution. Furthermore, temporal rhythmic entrainment has been successfully extended into applications in cognitive rehabilitation and speech and language rehabilitation, and thus become one of the major neurological mechanisms linking music and rhythm to brain rehabilitation. These findings provided a scientific basis for the development of neurologic music therapy. PMID:25774137