Koniges, A; Eder, E; Liu, W; Barnard, J; Friedman, A; Logan, G; Fisher, A; Masers, N; Bertozzi, A
2011-11-04
The Neutralized Drift Compression Experiment II (NDCX II) is an induction accelerator planned for initial commissioning in 2012. The final design calls for a 3 MeV, Li+ ion beam, delivered in a bunch with characteristic pulse duration of 1 ns, and transverse dimension of order 1 mm. The NDCX II will be used in studies of material in the warm dense matter (WDM) regime, and ion beam/hydrodynamic coupling experiments relevant to heavy ion based inertial fusion energy. We discuss recent efforts to adapt the 3D ALE-AMR code to model WDM experiments on NDCX II. The code, which combines Arbitrary Lagrangian Eulerian (ALE) hydrodynamics with Adaptive Mesh Refinement (AMR), has physics models that include ion deposition, radiation hydrodynamics, thermal diffusion, anisotropic material strength with material time history, and advanced models for fragmentation. Experiments at NDCX-II will explore the process of bubble and droplet formation (two-phase expansion) of superheated metal solids using ion beams. Experiments at higher temperatures will explore equation of state and heavy ion fusion beam-to-target energy coupling efficiency. Ion beams allow precise control of local beam energy deposition providing uniform volumetric heating on a timescale shorter than that of hydrodynamic expansion. The ALE-AMR code does not have any export control restrictions and is currently running at the National Energy Research Scientific Computing Center (NERSC) at LBNL and has been shown to scale well to thousands of CPUs. New surface tension models that are being implemented and applied to WDM experiments. Some of the approaches use a diffuse interface surface tension model that is based on the advective Cahn-Hilliard equations, which allows for droplet breakup in divergent velocity fields without the need for imposed perturbations. Other methods require seeding or other methods for droplet breakup. We also briefly discuss the effects of the move to exascale computing and related
NASA Astrophysics Data System (ADS)
Zeng, X.; Scovazzi, G.
2016-06-01
We present a monolithic arbitrary Lagrangian-Eulerian (ALE) finite element method for computing highly transient flows with strong shocks. We use a variational multiscale (VMS) approach to stabilize a piecewise-linear Galerkin formulation of the equations of compressible flows, and an entropy artificial viscosity to capture strong solution discontinuities. Our work demonstrates the feasibility of VMS methods for highly transient shock flows, an area of research for which the VMS literature is extremely scarce. In addition, the proposed monolithic ALE method is an alternative to the more commonly used Lagrangian+remap methods, in which, at each time step, a Lagrangian computation is followed by mesh smoothing and remap (conservative solution interpolation). Lagrangian+remap methods are the methods of choice in shock hydrodynamics computations because they provide nearly optimal mesh resolution in proximity of shock fronts. However, Lagrangian+remap methods are not well suited for imposing inflow and outflow boundary conditions. These issues offer an additional motivation for the proposed approach, in which we first perform the mesh motion, and then the flow computations using the monolithic ALE framework. The proposed method is second-order accurate and stable, as demonstrated by extensive numerical examples in two and three space dimensions.
SOLA-STAR: a one-dimensional ICED-ALE hydrodynamics program for spherically symmetric flows
Cloutman, L.D.
1980-07-01
This report describes a simple, general-purpose, and efficient algorithm for solving one-dimensional spherically symmetric, transient fluid-dynamics problems using a variation of the ICED-ALE technique. Included are the finite difference equations, three test problems that illustrate various capabilities of the program, and a complete code description, including a listing, sample data decks and output, a summary of important variable names, and hints for conversion to other operating systems.
Shadowfax: Moving mesh hydrodynamical integration code
NASA Astrophysics Data System (ADS)
Vandenbroucke, Bert
2016-05-01
Shadowfax simulates galaxy evolution. Written in object-oriented modular C++, it evolves a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. For the hydrodynamical integration, it makes use of a (co-) moving Lagrangian mesh. The code has a 2D and 3D version, contains utility programs to generate initial conditions and visualize simulation snapshots, and its input/output is compatible with a number of other simulation codes, e.g. Gadget2 (ascl:0003.001) and GIZMO (ascl:1410.003).
KIVA-4: An unstructured ALE code for compressible gas flow with sprays
NASA Astrophysics Data System (ADS)
Torres, David J.; Trujillo, Mario F.
2006-12-01
The KIVA family of codes was developed to simulate the thermal and fluid processes taking place inside an internal combustion engine. In this latest version of this open source code, KIVA-4, the numerics have been generalized to unstructrured meshes. This change required modifications to the Lagrangian phase of the computations, the pressure solution and fundamental changes in the fluxing schemes of the rezoning phase. This newest version of the code inherits all the droplet phase capabilities and physical sub-models of previous versions. The integration of the gas phase equations with moving solid boundaries continues to employ the successful arbitrary Lagrangian-Eulerian (ALE) methodology. Its new unstructured capability facilitates grid construction in complicated geometries and affords a higher degree of flexibility. The numerics of the code, emphasizing the new additions, are described. Various computational examples are performed demonstrating the new capabilities of the code.
TORUS: Radiation transport and hydrodynamics code
NASA Astrophysics Data System (ADS)
Harries, Tim
2014-04-01
TORUS is a flexible radiation transfer and radiation-hydrodynamics code. The code has a basic infrastructure that includes the AMR mesh scheme that is used by several physics modules including atomic line transfer in a moving medium, molecular line transfer, photoionization, radiation hydrodynamics and radiative equilibrium. TORUS is useful for a variety of problems, including magnetospheric accretion onto T Tauri stars, spiral nebulae around Wolf-Rayet stars, discs around Herbig AeBe stars, structured winds of O supergiants and Raman-scattered line formation in symbiotic binaries, and dust emission and molecular line formation in star forming clusters. The code is written in Fortran 2003 and is compiled using a standard Gnu makefile. The code is parallelized using both MPI and OMP, and can use these parallel sections either separately or in a hybrid mode.
An implicit Smooth Particle Hydrodynamic code
Charles E. Knapp
2000-04-01
An implicit version of the Smooth Particle Hydrodynamic (SPH) code SPHINX has been written and is working. In conjunction with the SPHINX code the new implicit code models fluids and solids under a wide range of conditions. SPH codes are Lagrangian, meshless and use particles to model the fluids and solids. The implicit code makes use of the Krylov iterative techniques for solving large linear-systems and a Newton-Raphson method for non-linear corrections. It uses numerical derivatives to construct the Jacobian matrix. It uses sparse techniques to save on memory storage and to reduce the amount of computation. It is believed that this is the first implicit SPH code to use Newton-Krylov techniques, and is also the first implicit SPH code to model solids. A description of SPH and the techniques used in the implicit code are presented. Then, the results of a number of tests cases are discussed, which include a shock tube problem, a Rayleigh-Taylor problem, a breaking dam problem, and a single jet of gas problem. The results are shown to be in very good agreement with analytic solutions, experimental results, and the explicit SPHINX code. In the case of the single jet of gas case it has been demonstrated that the implicit code can do a problem in much shorter time than the explicit code. The problem was, however, very unphysical, but it does demonstrate the potential of the implicit code. It is a first step toward a useful implicit SPH code.
Production code control system for hydrodynamics simulations
Slone, D.M.
1997-08-18
We describe how the Production Code Control System (pCCS), written in Perl, has been used to control and monitor the execution of a large hydrodynamics simulation code in a production environment. We have been able to integrate new, disparate, and often independent, applications into the PCCS framework without the need to modify any of our existing application codes. Both users and code developers see a consistent interface to the simulation code and associated applications regardless of the physical platform, whether an MPP, SMP, server, or desktop workstation. We will also describe our use of Perl to develop a configuration management system for the simulation code, as well as a code usage database and report generator. We used Perl to write a backplane that allows us plug in preprocessors, the hydrocode, postprocessors, visualization tools, persistent storage requests, and other codes. We need only teach PCCS a minimal amount about any new tool or code to essentially plug it in and make it usable to the hydrocode. PCCS has made it easier to link together disparate codes, since using Perl has removed the need to learn the idiosyncrasies of system or RPC programming. The text handling in Perl makes it easy to teach PCCS about new codes, or changes to existing codes.
Radiation hydrodynamics integrated in the PLUTO code
NASA Astrophysics Data System (ADS)
Kolb, Stefan M.; Stute, Matthias; Kley, Wilhelm; Mignone, Andrea
2013-11-01
Aims: The transport of energy through radiation is very important in many astrophysical phenomena. In dynamical problems the time-dependent equations of radiation hydrodynamics have to be solved. We present a newly developed radiation-hydrodynamics module specifically designed for the versatile magnetohydrodynamic (MHD) code PLUTO. Methods: The solver is based on the flux-limited diffusion approximation in the two-temperature approach. All equations are solved in the co-moving frame in the frequency-independent (gray) approximation. The hydrodynamics is solved by the different Godunov schemes implemented in PLUTO, and for the radiation transport we use a fully implicit scheme. The resulting system of linear equations is solved either using the successive over-relaxation (SOR) method (for testing purposes) or using matrix solvers that are available in the PETSc library. We state in detail the methodology and describe several test cases to verify the correctness of our implementation. The solver works in standard coordinate systems, such as Cartesian, cylindrical, and spherical, and also for non-equidistant grids. Results: We present a new radiation-hydrodynamics solver coupled to the MHD-code PLUTO that is a modern, versatile, and efficient new module for treating complex radiation hydrodynamical problems in astrophysics. As test cases, either purely radiative situations, or full radiation-hydrodynamical setups (including radiative shocks and convection in accretion disks) were successfully studied. The new module scales very well on parallel computers using MPI. For problems in star or planet formation, we added the possibility of irradiation by a central source.
VH-1: Multidimensional ideal compressible hydrodynamics code
NASA Astrophysics Data System (ADS)
Hawley, John; Blondin, John; Lindahl, Greg; Lufkin, Eric
2012-04-01
VH-1 is a multidimensional ideal compressible hydrodynamics code written in FORTRAN for use on any computing platform, from desktop workstations to supercomputers. It uses a Lagrangian remap version of the Piecewise Parabolic Method developed by Paul Woodward and Phil Colella in their 1984 paper. VH-1 comes in a variety of versions, from a simple one-dimensional serial variant to a multi-dimensional version scalable to thousands of processors.
Building a Hydrodynamics Code with Kinetic Theory
NASA Astrophysics Data System (ADS)
Sagert, Irina; Bauer, Wolfgang; Colbry, Dirk; Pickett, Rodney; Strother, Terrance
2013-08-01
We report on the development of a test-particle based kinetic Monte Carlo code for large systems and its application to simulate matter in the continuum regime. Our code combines advantages of the Direct Simulation Monte Carlo and the Point-of-Closest-Approach methods to solve the collision integral of the Boltzmann equation. With that, we achieve a high spatial accuracy in simulations while maintaining computational feasibility when applying a large number of test-particles. The hybrid setup of our approach allows us to study systems which move in and out of the hydrodynamic regime, with low and high particle densities. To demonstrate our code's ability to reproduce hydrodynamic behavior we perform shock wave simulations and focus here on the Sedov blast wave test. The blast wave problem describes the evolution of a spherical expanding shock front and is an important verification problem for codes which are applied in astrophysical simulation, especially for approaches which aim to study core-collapse supernovae.
EUNHA: a New Cosmological Hydrodynamic Simulation Code
NASA Astrophysics Data System (ADS)
Shin, Jihye; Kim, Juhan; Kim, Sungsoo S.; Park, Changbom
2014-06-01
We develop a parallel cosmological hydrodynamic simulation code designed for the study of formation and evolution of cosmological structures. The gravitational force is calculated using the TreePM method and the hydrodynamics is implemented based on the smoothed particle hydrodynamics. The initial displacement and velocity of simulation particles are calculated according to second-order Lagrangian perturbation theory using the power spectra of dark matter and baryonic matter. The initial background temperature is given by Recfast and the temperature fluctuations at the initial particle position are assigned according to the adiabatic model. We use a time-limiter scheme over the individual time steps to capture shock-fronts and to ease the time-step tension between the shock and preshock particles. We also include the astrophysical gas processes of radiative heating/cooling, star formation, metal enrichment, and supernova feedback. We test the code in several standard cases such as one-dimensional Riemann problems, Kelvin-Helmholtz, and Sedov blast wave instability. Star formation on the galactic disk is investigated to check whether the Schmidt-Kennicutt relation is properly recovered. We also study global star formation history at different simulation resolutions and compare them with observations.
Coupling Magnetic Fields and ALE Hydrodynamics for 3D Simulations of MFCG's
White, D; Rieben, R; Wallin, B
2006-09-20
We review the development of a full 3D multiphysics code for the simulation of explosively driven Magnetic Flux Compression Generators (MFCG) and related pulse power devices. In a typical MFCG the device is seeded with an initial electric current and the device is then detonated. The detonation compresses the magnetic field and amplifies the current. This is a multiphysics problem in that detonation kinetics, electromagnetic diffusion and induction, material deformation, and thermal effects are all important. This is a tightly coupled problem in that the different physical quantities have comparable spatial and temporal variation, and hence should be solved simultaneously on the same computational mesh.
Najjar, F M; Solberg, J; White, D
2008-04-17
A verification test suite has been assessed with primary focus on low reynolds number flow of liquid metals. This is representative of the interface between the armature and rail in gun applications. The computational multiphysics framework, ALE3D, is used. The main objective of the current study is to provide guidance and gain confidence in the results obtained with ALE3D. A verification test suite based on 2-D cases is proposed and includes the lid-driven cavity and the Couette flow are investigated. The hydro and thermal fields are assumed to be steady and laminar in nature. Results are compared with analytical solutions and previously published data. Mesh resolution studies are performed along with various models for the equation of state.
KIVA reactive hydrodynamics code applied to detonations in high vacuum
NASA Astrophysics Data System (ADS)
Greiner, N. Roy
1989-08-01
The KIVA reactive hydrodynamics code was adapted for modeling detonation hydrodynamics in a high vacuum. Adiabatic cooling rapidly freezes detonation reactions as a result of free expansion into the vacuum. After further expansion, a molecular beam of the products is admitted without disturbance into a drift tube, where the products are analyzed with a mass spectrometer. How the model is used for interpretation and design of experiments for detonation chemistry is explained. Modeling of experimental hydrodynamic characterization by laser-schlieren imaging and model-aided mapping that will link chemical composition data to particular volume elements in the explosive charge are also discussed.
FARGO3D: Hydrodynamics/magnetohydrodynamics code
NASA Astrophysics Data System (ADS)
Benítez Llambay, Pablo; Masset, Frédéric
2015-09-01
A successor of FARGO (ascl:1102.017), FARGO3D is a versatile HD/MHD code that runs on clusters of CPUs or GPUs, with special emphasis on protoplanetary disks. FARGO3D offers Cartesian, cylindrical or spherical geometry; 1-, 2- or 3-dimensional calculations; and orbital advection (aka FARGO) for HD and MHD calculations. As in FARGO, a simple Runge-Kutta N-body solver may be used to describe the orbital evolution of embedded point-like objects. There is no need to know CUDA; users can develop new functions in C and have them translated to CUDA automatically to run on GPUs.
A new hydrodynamics code for Type Ia supernovae
NASA Astrophysics Data System (ADS)
Leung, S.-C.; Chu, M.-C.; Lin, L.-M.
2015-12-01
A two-dimensional hydrodynamics code for Type Ia supernova (SNIa) simulations is presented. The code includes a fifth-order shock-capturing scheme WENO, detailed nuclear reaction network, flame-capturing scheme and sub-grid turbulence. For post-processing, we have developed a tracer particle scheme to record the thermodynamical history of the fluid elements. We also present a one-dimensional radiative transfer code for computing observational signals. The code solves the Lagrangian hydrodynamics and moment-integrated radiative transfer equations. A local ionization scheme and composition dependent opacity are included. Various verification tests are presented, including standard benchmark tests in one and two dimensions. SNIa models using the pure turbulent deflagration model and the delayed-detonation transition model are studied. The results are consistent with those in the literature. We compute the detailed chemical evolution using the tracer particles' histories, and we construct corresponding bolometric light curves from the hydrodynamics results. We also use a GPU to speed up the computation of some highly repetitive subroutines. We achieve an acceleration of 50 times for some subroutines and a factor of 6 in the global run time.
Extending ALE3D, an Arbitrarily Connected hexahedral 3D Code, to Very Large Problem Size (U)
Nichols, A L
2010-12-15
As the number of compute units increases on the ASC computers, the prospect of running previously unimaginably large problems is becoming a reality. In an arbitrarily connected 3D finite element code, like ALE3D, one must provide a unique identification number for every node, element, face, and edge. This is required for a number of reasons, including defining the global connectivity array required for domain decomposition, identifying appropriate communication patterns after domain decomposition, and determining the appropriate load locations for implicit solvers, for example. In most codes, the unique identification number is defined as a 32-bit integer. Thus the maximum value available is 231, or roughly 2.1 billion. For a 3D geometry consisting of arbitrarily connected hexahedral elements, there are approximately 3 faces for every element, and 3 edges for every node. Since the nodes and faces need id numbers, using 32-bit integers puts a hard limit on the number of elements in a problem at roughly 700 million. The first solution to this problem would be to replace 32-bit signed integers with 32-bit unsigned integers. This would increase the maximum size of a problem by a factor of 2. This provides some head room, but almost certainly not one that will last long. Another solution would be to replace all 32-bit int declarations with 64-bit long long declarations. (long is either a 32-bit or a 64-bit integer, depending on the OS). The problem with this approach is that there are only a few arrays that actually need to extended size, and thus this would increase the size of the problem unnecessarily. In a future computing environment where CPUs are abundant but memory relatively scarce, this is probably the wrong approach. Based on these considerations, we have chosen to replace only the global identifiers with the appropriate 64-bit integer. The problem with this approach is finding all the places where data that is specified as a 32-bit integer needs to be
Test Problems for Reactive Flow HE Model in the ALE3D Code and Limited Sensitivity Study
Gerassimenko, M.
2000-03-01
We document quick running test problems for a reactive flow model of HE initiation incorporated into ALE3D. A quarter percent change in projectile velocity changes the outcome from detonation to HE burn that dies down. We study the sensitivity of calculated HE behavior to several parameters of practical interest where modeling HE initiation with ALE3D.
RAMSES: A new N-body and hydrodynamical code
NASA Astrophysics Data System (ADS)
Teyssier, Romain
2010-11-01
A new N-body and hydrodynamical code, called RAMSES, is presented. It has been designed to study structure formation in the universe with high spatial resolution. The code is based on Adaptive Mesh Refinement (AMR) technique, with a tree based data structure allowing recursive grid refinements on a cell-by-cell basis. The N-body solver is very similar to the one developed for the ART code (Kravtsov et al. 97), with minor differences in the exact implementation. The hydrodynamical solver is based on a second-order Godunov method, a modern shock-capturing scheme known to compute accurately the thermal history of the fluid component. The accuracy of the code is carefully estimated using various test cases, from pure gas dynamical tests to cosmological ones. The specific refinement strategy used in cosmological simulations is described, and potential spurious effects associated to shock waves propagation in the resulting AMR grid are discussed and found to be negligible. Results obtained in a large N-body and hydrodynamical simulation of structure formation in a low density LCDM universe are finally reported, with 256^3 particles and 4.1 10^7 cells in the AMR grid, reaching a formal resolution of 8192^3. A convergence analysis of different quantities, such as dark matter density power spectrum, gas pressure power spectrum and individual haloes temperature profiles, shows that numerical results are converging down to the actual resolution limit of the code, and are well reproduced by recent analytical predictions in the framework of the halo model.
Developing a Multi-Dimensional Hydrodynamics Code with Astrochemical Reactions
NASA Astrophysics Data System (ADS)
Kwak, Kyujin; Yang, Seungwon
2015-08-01
The Atacama Large Millimeter/submillimeter Array (ALMA) revealed high resolution molecular lines some of which are still unidentified yet. Because formation of these astrochemical molecules has been seldom studied in traditional chemistry, observations of new molecular lines drew a lot of attention from not only astronomers but also chemists both experimental and theoretical. Theoretical calculations for the formation of these astrochemical molecules have been carried out providing reaction rates for some important molecules, and some of theoretical predictions have been measured in laboratories. The reaction rates for the astronomically important molecules are now collected to form databases some of which are publically available. By utilizing these databases, we develop a multi-dimensional hydrodynamics code that includes the reaction rates of astrochemical molecules. Because this type of hydrodynamics code is able to trace the molecular formation in a non-equilibrium fashion, it is useful to study the formation history of these molecules that affects the spatial distribution of some specific molecules. We present the development procedure of this code and some test problems in order to verify and validate the developed code.
Adding kinetics and hydrodynamics to the CHEETAH thermochemical code
Fried, L.E., Howard, W.M., Souers, P.C.
1997-01-15
In FY96 we released CHEETAH 1.40, which made extensive improvements on the stability and user friendliness of the code. CHEETAH now has over 175 users in government, academia, and industry. Efforts have also been focused on adding new advanced features to CHEETAH 2.0, which is scheduled for release in FY97. We have added a new chemical kinetics capability to CHEETAH. In the past, CHEETAH assumed complete thermodynamic equilibrium and independence of time. The addition of a chemical kinetic framework will allow for modeling of time-dependent phenomena, such as partial combustion and detonation in composite explosives with large reaction zones. We have implemented a Wood-Kirkwood detonation framework in CHEETAH, which allows for the treatment of nonideal detonations and explosive failure. A second major effort in the project this year has been linking CHEETAH to hydrodynamic codes to yield an improved HE product equation of state. We have linked CHEETAH to 1- and 2-D hydrodynamic codes, and have compared the code to experimental data. 15 refs., 13 figs., 1 tab.
A nonlocal electron conduction model for multidimensional radiation hydrodynamics codes
NASA Astrophysics Data System (ADS)
Schurtz, G. P.; Nicolaï, Ph. D.; Busquet, M.
2000-10-01
Numerical simulation of laser driven Inertial Confinement Fusion (ICF) related experiments require the use of large multidimensional hydro codes. Though these codes include detailed physics for numerous phenomena, they deal poorly with electron conduction, which is the leading energy transport mechanism of these systems. Electron heat flow is known, since the work of Luciani, Mora, and Virmont (LMV) [Phys. Rev. Lett. 51, 1664 (1983)], to be a nonlocal process, which the local Spitzer-Harm theory, even flux limited, is unable to account for. The present work aims at extending the original formula of LMV to two or three dimensions of space. This multidimensional extension leads to an equivalent transport equation suitable for easy implementation in a two-dimensional radiation-hydrodynamic code. Simulations are presented and compared to Fokker-Planck simulations in one and two dimensions of space.
RAM: a Relativistic Adaptive Mesh Refinement Hydrodynamics Code
Zhang, Wei-Qun; MacFadyen, Andrew I.; /Princeton, Inst. Advanced Study
2005-06-06
The authors have developed a new computer code, RAM, to solve the conservative equations of special relativistic hydrodynamics (SRHD) using adaptive mesh refinement (AMR) on parallel computers. They have implemented a characteristic-wise, finite difference, weighted essentially non-oscillatory (WENO) scheme using the full characteristic decomposition of the SRHD equations to achieve fifth-order accuracy in space. For time integration they use the method of lines with a third-order total variation diminishing (TVD) Runge-Kutta scheme. They have also implemented fourth and fifth order Runge-Kutta time integration schemes for comparison. The implementation of AMR and parallelization is based on the FLASH code. RAM is modular and includes the capability to easily swap hydrodynamics solvers, reconstruction methods and physics modules. In addition to WENO they have implemented a finite volume module with the piecewise parabolic method (PPM) for reconstruction and the modified Marquina approximate Riemann solver to work with TVD Runge-Kutta time integration. They examine the difficulty of accurately simulating shear flows in numerical relativistic hydrodynamics codes. They show that under-resolved simulations of simple test problems with transverse velocity components produce incorrect results and demonstrate the ability of RAM to correctly solve these problems. RAM has been tested in one, two and three dimensions and in Cartesian, cylindrical and spherical coordinates. they have demonstrated fifth-order accuracy for WENO in one and two dimensions and performed detailed comparison with other schemes for which they show significantly lower convergence rates. Extensive testing is presented demonstrating the ability of RAM to address challenging open questions in relativistic astrophysics.
Pencil: Finite-difference Code for Compressible Hydrodynamic Flows
NASA Astrophysics Data System (ADS)
Brandenburg, Axel; Dobler, Wolfgang
2010-10-01
The Pencil code is a high-order finite-difference code for compressible hydrodynamic flows with magnetic fields. It is highly modular and can easily be adapted to different types of problems. The code runs efficiently under MPI on massively parallel shared- or distributed-memory computers, like e.g. large Beowulf clusters. The Pencil code is primarily designed to deal with weakly compressible turbulent flows. To achieve good parallelization, explicit (as opposed to compact) finite differences are used. Typical scientific targets include driven MHD turbulence in a periodic box, convection in a slab with non-periodic upper and lower boundaries, a convective star embedded in a fully nonperiodic box, accretion disc turbulence in the shearing sheet approximation, self-gravity, non-local radiation transfer, dust particle evolution with feedback on the gas, etc. A range of artificial viscosity and diffusion schemes can be invoked to deal with supersonic flows. For direct simulations regular viscosity and diffusion is being used. The code is written in well-commented Fortran90.
Modeling Relativistic Jets Using the Athena Hydrodynamics Code
NASA Astrophysics Data System (ADS)
Pauls, David; Pollack, Maxwell; Wiita, Paul
2014-11-01
We used the Athena hydrodynamics code (Beckwith & Stone 2011) to model early-stage two-dimensional relativistic jets as approximations to the growth of radio-loud active galactic nuclei. We analyzed variability of the radio emission by calculating fluxes from a vertical strip of zones behind a standing shock, as discussed in the accompanying poster. We found the advance speed of the jet bow shock for various input jet velocities and jet-to-ambient density ratios. Faster jets and higher jet densities produce faster shock advances. We investigated the effects of parameters such as the Courant-Friedrichs-Lewy number, the input jet velocity, and the density ratio on the stability of the simulated jet, finding that numerical instabilities grow rapidly when the CFL number is above 0.1. We found that greater jet input velocities and higher density ratios lengthen the time the jet remains stable. We also examined the effects of the boundary conditions, the CFL number, the input jet velocity, the grid resolution, and the density ratio on the premature termination of Athena code. We found that a grid of 1200 by 1000 zones allows the code to run with minimal errors, while still maintaining an adequate resolution. This work is supported by the Mentored Undergraduate Summer Experience program at TCNJ.
Adaptive rezoner in a two-dimensional Lagrangian hydrodynamic code
Pyun, J.J.; Saltzman, J.S.; Scannapieco, A.J.; Carroll, D.
1985-01-01
In an effort to increase spatial resolution without adding additional meshes, an adaptive mesh was incorporated into a two-dimensional Lagrangian hydrodynamics code along with two-dimensional flux corrected (FCT) remapper. The adaptive mesh automatically generates a mesh based on smoothness and orthogonality, and at the same time also tracks physical conditions of interest by focusing mesh points in regions that exhibit those conditions; this is done by defining a weighting function associated with the physical conditions to be tracked. The FCT remapper calculates the net transportive fluxes based on a weighted average of two fluxes computed by a low-order scheme and a high-order scheme. This averaging procedure produces solutions which are conservative and nondiffusive, and maintains positivity. 10 refs., 12 figs.
ALE advantage in hypervelocity impact calculations
Gerassimenko, M.; Rathkopf, J.
1998-10-01
The ALE3D code is used to model experiments relevant to hypervelocity impact lethality, carried out in the 4-5 km/s velocity range. The code is run in the Eulerian and ALE modes. Zoning in the calculations is refined beyond the level found in most lethality calculations, but still short of convergence. The level of zoning refinement that produces equivalent results in uniformly zoned Eulerian calculations and ALE ones utilizing specialized zoning, weighting and relaxation techniques is established. It takes 11 times fewer zones and about 60% as many cycles when ALE capabilities are used. Calculations are compared to experimental results.
An Invariant-Preserving ALE Method for Solids under Extreme Conditions
Sambasivan, Shiv Kumar; Christon, Mark A
2012-07-17
We are proposing a fundamentally new approach to ALE methods for solids undergoing large deformation due to extreme loading conditions. Our approach is based on a physically-motivated and mathematically rigorous construction of the underlying Lagrangian method, vector/tensor reconstruction, remapping, and interface reconstruction. It is transformational because it deviates dramatically from traditionally accepted ALE methods and provides the following set of unique attributes: (1) a three-dimensional, finite volume, cell-centered ALE framework with advanced hypo-/hyper-elasto-plastic constitutive theories for solids; (2) a new physically and mathematically consistent reconstruction method for vector/tensor fields; (3) advanced invariant-preserving remapping algorithm for vector/tensor quantities; (4) moment-of-fluid (MoF) interface reconstruction technique for multi-material problems with solids undergoing large deformations. This work brings together many new concepts, that in combination with emergent cell-centered Lagrangian hydrodynamics methods will produce a cutting-edge ALE capability and define a new state-of-the-art. Many ideas in this work are new, completely unexplored, and hence high risk. The proposed research and the resulting algorithms will be of immediate use in Eulerian, Lagrangian and ALE codes under the ASC program at the lab. In addition, the research on invariant preserving reconstruction/remap of tensor quantities is of direct interest to ongoing CASL and climate modeling efforts at LANL. The application space impacted by this work includes Inertial Confinement Fusion (ICF), Z-pinch, munition-target interactions, geological impact dynamics, shock processing of powders and shaped charges. The ALE framework will also provide a suitable test-bed for rapid development and assessment of hypo-/hyper-elasto-plastic constitutive theories. Today, there are no invariant-preserving ALE algorithms for treating solids with large deformations. Therefore
Description of a parallel, 3D, finite element, hydrodynamics-diffusion code
Milovich, J L; Prasad, M K; Shestakov, A I
1999-04-11
We describe a parallel, 3D, unstructured grid finite element, hydrodynamic diffusion code for inertial confinement fusion (ICF) applications and the ancillary software used to run it. The code system is divided into two entities, a controller and a stand-alone physics code. The code system may reside on different computers; the controller on the user's workstation and the physics code on a supercomputer. The physics code is composed of separate hydrodynamic, equation-of-state, laser energy deposition, heat conduction, and radiation transport packages and is parallelized for distributed memory architectures. For parallelization, a SPMD model is adopted; the domain is decomposed into a disjoint collection of subdomains, one per processing element (PE). The PEs communicate using MPI. The code is used to simulate the hydrodynamic implosion of a spherical bubble.
Vitruk, S.G.; Korsun, A.S.; Ushakov, P.A.
1995-09-01
The multilevel mathematical model of neutron thermal hydrodynamic processes in a passive safety core without assemblies duct walls and appropriate computer code SKETCH, consisted of thermal hydrodynamic module THEHYCO-3DT and neutron one, are described. A new effective discretization technique for energy, momentum and mass conservation equations is applied in hexagonal - z geometry. The model adequacy and applicability are presented. The results of the calculations show that the model and the computer code could be used in conceptual design of advanced reactors.
NASA Astrophysics Data System (ADS)
Sandalski, Stou
Smooth particle hydrodynamics is an efficient method for modeling the dynamics of fluids. It is commonly used to simulate astrophysical processes such as binary mergers. We present a newly developed GPU accelerated smooth particle hydrodynamics code for astrophysical simulations. The code is named
Modeling Three-Dimensional Shock Initiation of PBX 9501 in ALE3D
Leininger, L; Springer, H K; Mace, J; Mas, E
2008-07-08
A recent SMIS (Specific Munitions Impact Scenario) experimental series performed at Los Alamos National Laboratory has provided 3-dimensional shock initiation behavior of the HMX-based heterogeneous high explosive, PBX 9501. A series of finite element impact calculations have been performed in the ALE3D [1] hydrodynamic code and compared to the SMIS results to validate and study code predictions. These SMIS tests used a powder gun to shoot scaled NATO standard fragments into a cylinder of PBX 9501, which has a PMMA case and a steel impact cover. This SMIS real-world shot scenario creates a unique test-bed because (1) SMIS tests facilitate the investigation of 3D Shock to Detonation Transition (SDT) within the context of a considerable suite of diagnostics, and (2) many of the fragments arrive at the impact plate off-center and at an angle of impact. A particular goal of these model validation experiments is to demonstrate the predictive capability of the ALE3D implementation of the Tarver-Lee Ignition and Growth reactive flow model [2] within a fully 3-dimensional regime of SDT. The 3-dimensional Arbitrary Lagrange Eulerian (ALE) hydrodynamic model in ALE3D applies the Ignition and Growth (I&G) reactive flow model with PBX 9501 parameters derived from historical 1-dimensional experimental data. The model includes the off-center and angle of impact variations seen in the experiments. Qualitatively, the ALE3D I&G calculations reproduce observed 'Go/No-Go' 3D Shock to Detonation Transition (SDT) reaction in the explosive, as well as the case expansion recorded by a high-speed optical camera. Quantitatively, the calculations show good agreement with the shock time of arrival at internal and external diagnostic pins. This exercise demonstrates the utility of the Ignition and Growth model applied for the response of heterogeneous high explosives in the SDT regime.
CoCoNuT: General relativistic hydrodynamics code with dynamical space-time evolution
NASA Astrophysics Data System (ADS)
Dimmelmeier, Harald; Novak, Jérôme; Cerdá-Durán, Pablo
2012-02-01
CoCoNuT is a general relativistic hydrodynamics code with dynamical space-time evolution. The main aim of this numerical code is the study of several astrophysical scenarios in which general relativity can play an important role, namely the collapse of rapidly rotating stellar cores and the evolution of isolated neutron stars. The code has two flavors: CoCoA, the axisymmetric (2D) magnetized version, and CoCoNuT, the 3D non-magnetized version.
Reliable estimation of shock position in shock-capturing compressible hydrodynamics codes
Nelson, Eric M
2008-01-01
The displacement method for estimating shock position in a shock-capturing compressible hydrodynamics code is introduced. Common estimates use simulation data within the captured shock, but the displacement method uses data behind the shock, making the estimate consistent with and as reliable as estimates of material parameters obtained from averages or fits behind the shock. The displacement method is described in the context of a steady shock in a one-dimensional lagrangian hydrodynamics code, and demonstrated on a piston problem and a spherical blast wave.The displacement method's estimates of shock position are much better than common estimates in such applications.
Reactive Flow Modeling of Liquid Explosives via ALE3D/Cheetah Simulations
Kuo, I W; Bastea, S; Fried, L E
2010-03-10
We carried out reactive flow simulations of liquid explosives such as nitromethane using the hydrodynamic code ALE3D coupled with equations of state and reaction kinetics modeled by the thermochemical code Cheetah. The simulation set-up was chosen to mimic cylinder experiments. For pure unconfined nitromethane we find that the failure diameter and detonation velocity dependence on charge diameter are in agreement with available experimental results. Such simulations are likely to be useful for determining detonability and failure behavior for a wide range of experimental conditions and explosive compounds.
CRASH: A BLOCK-ADAPTIVE-MESH CODE FOR RADIATIVE SHOCK HYDRODYNAMICS-IMPLEMENTATION AND VERIFICATION
Van der Holst, B.; Toth, G.; Sokolov, I. V.; Myra, E. S.; Fryxell, B.; Drake, R. P.; Powell, K. G.; Holloway, J. P.; Stout, Q.; Adams, M. L.; Morel, J. E.; Karni, S.
2011-06-01
We describe the Center for Radiative Shock Hydrodynamics (CRASH) code, a block-adaptive-mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with a gray or multi-group method and uses a flux-limited diffusion approximation to recover the free-streaming limit. Electrons and ions are allowed to have different temperatures and we include flux-limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite-volume discretization in either one-, two-, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator-split method is used to solve these equations in three substeps: (1) an explicit step of a shock-capturing hydrodynamic solver; (2) a linear advection of the radiation in frequency-logarithm space; and (3) an implicit solution of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The applications are for astrophysics and laboratory astrophysics. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with a new radiation transfer and heat conduction library and equation-of-state and multi-group opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework.
CRASH: A Block-Adaptive-Mesh Code for Radiative Shock Hydrodynamics
NASA Astrophysics Data System (ADS)
van der Holst, B.; Toth, G.; Sokolov, I. V.; Powell, K. G.; Holloway, J. P.; Myra, E. S.; Stout, Q.; Adams, M. L.; Morel, J. E.; Drake, R. P.
2011-01-01
We describe the CRASH (Center for Radiative Shock Hydrodynamics) code, a block adaptive mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with the gray or multigroup method and uses a flux limited diffusion approximation to recover the free-streaming limit. The electrons and ions are allowed to have different temperatures and we include a flux limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite volume discretization in either one, two, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator split method is used to solve these equations in three substeps: (1) solve the hydrodynamic equations with shock-capturing schemes, (2) a linear advection of the radiation in frequency-logarithm space, and (3) an implicit solve of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with this new radiation transfer and heat conduction library and equation-of-state and multigroup opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework (SWMF).
PEGAS: Hydrodynamical code for numerical simulation of the gas components of interacting galaxies
NASA Astrophysics Data System (ADS)
Kulikov, Igor
A new hydrodynamical code for numerical simulation of the gravitational gas dynamics is described in the paper. The code is based on the Fluid-in-Cell method with a Godunov-type scheme at the Eulerian stage. The numerical method was adapted for GPU-based supercomputers. The performance of the code is shown by the simulation of the collision of the gas components of two similar disc galaxies in the course of the central collision of the galaxies in the polar direction.
NASA Astrophysics Data System (ADS)
Merlin, E.; Buonomo, U.; Grassi, T.; Piovan, L.; Chiosi, C.
2010-04-01
Context. We present the new release of the Padova N-body code for cosmological simulations of galaxy formation and evolution, EvoL. The basic Tree + SPH code is presented and analysed, together with an overview of the software architectures. Aims: EvoL is a flexible parallel Fortran95 code, specifically designed for simulations of cosmological structure formations on cluster, galactic and sub-galactic scales. Methods: EvoL is a fully Lagrangian self-adaptive code, based on the classical oct-tree by Barnes & Hut (1986, Nature, 324, 446) and on the smoothed particle hydrodynamics algorithm (SPH, Lucy 1977, AJ, 82, 1013). It includes special features like adaptive softening lengths with correcting extra-terms, and modern formulations of SPH and artificial viscosity. It is designed to be run in parallel on multiple CPUs to optimise the performance and save computational time. Results: We describe the code in detail, and present the results of a number of standard hydrodynamical tests.
NASA Technical Reports Server (NTRS)
Libersky, Larry; Allahdadi, Firooz A.; Carney, Theodore C.
1992-01-01
Analysis of interaction occurring between space debris and orbiting structures is of great interest to the planning and survivability of space assets. Computer simulation of the impact events using hydrodynamic codes can provide some understanding of the processes but the problems involved with this fundamental approach are formidable. First, any realistic simulation is necessarily three-dimensional, e.g., the impact and breakup of a satellite. Second, the thickness of important components such as satellite skins or bumper shields are small with respect to the dimension of the structure as a whole, presenting severe zoning problems for codes. Thirdly, the debris cloud produced by the primary impact will yield many secondary impacts which will contribute to the damage and possible breakup of the structure. The problem was approached by choosing a relatively new computational technique that has virtues peculiar to space impacts. The method is called Smoothed Particle Hydrodynamics.
AstroBEAR: Adaptive Mesh Refinement Code for Ideal Hydrodynamics & Magnetohydrodynamics
NASA Astrophysics Data System (ADS)
Cunningham, Andrew J.; Frank, Adam; Varniere, Peggy; Mitran, Sorin; Jones, Thomas W.
2011-04-01
AstroBEAR is a modular hydrodynamic & magnetohydrodynamic code environment designed for a variety of astrophysical applications. It uses the BEARCLAW package, a multidimensional, Eulerian computational code used to solve hyperbolic systems of equations. AstroBEAR allows adaptive-mesh-refinment (AMR) simulations in 2, 2.5 (i.e., cylindrical), and 3 dimensions, in either cartesian or curvilinear coordinates. Parallel applications are supported through the MPI architecture. AstroBEAR is written in Fortran 90/95 using standard libraries. AstroBEAR supports hydrodynamic (HD) and magnetohydrodynamic (MHD) applications using a variety of spatial and temporal methods. MHD simulations are kept divergence-free via the constrained transport (CT) methods of Balsara & Spicer. Three different equation of state environments are available: ideal gas, gas with differing isentropic γ, and the analytic Thomas-Fermi formulation of A.R. Bell [2]. Current work is being done to develop a more advanced real gas equation of state.
ALE3D Statistical Hot Spot Model Results for LX-17
Nichols, A L III; Tarver, C M; McGuire, E M
2003-07-11
The Statistical Hot Spot shock initiation and detonation reactive flow model for solid explosives in the ALE3D hydrodynamic computer code provides physically realistic descriptions of: hot spot formation; ignition (or failure to ignite); growth of reaction (or failure to grow) into surrounding particles; coalescence of reacting hot spots; transition to detonation; and self-sustaining detonation. The model has already successfully modeled several processes in HMX-based explosives, such as shock desensitization, that can not predicted by other reactive flow models. In this paper, the Statistical Hot Spot model is applied to experimental embedded gauge data on the insensitive triaminotrintrobenzene (TATB) based explosive LX-17.
Simulations of implosions with a 3D, parallel, unstructured-grid, radiation-hydrodynamics code
Kaiser, T B; Milovich, J L; Prasad, M K; Rathkopf, J; Shestakov, A I
1998-12-28
An unstructured-grid, radiation-hydrodynamics code is used to simulate implosions. Although most of the problems are spherically symmetric, they are run on 3D, unstructured grids in order to test the code's ability to maintain spherical symmetry of the converging waves. Three problems, of increasing complexity, are presented. In the first, a cold, spherical, ideal gas bubble is imploded by an enclosing high pressure source. For the second, we add non-linear heat conduction and drive the implosion with twelve laser beams centered on the vertices of an icosahedron. In the third problem, a NIF capsule is driven with a Planckian radiation source.
Hydrodynamic Optimization Method and Design Code for Stall-Regulated Hydrokinetic Turbine Rotors
Sale, D.; Jonkman, J.; Musial, W.
2009-08-01
This report describes the adaptation of a wind turbine performance code for use in the development of a general use design code and optimization method for stall-regulated horizontal-axis hydrokinetic turbine rotors. This rotor optimization code couples a modern genetic algorithm and blade-element momentum performance code in a user-friendly graphical user interface (GUI) that allows for rapid and intuitive design of optimal stall-regulated rotors. This optimization method calculates the optimal chord, twist, and hydrofoil distributions which maximize the hydrodynamic efficiency and ensure that the rotor produces an ideal power curve and avoids cavitation. Optimizing a rotor for maximum efficiency does not necessarily create a turbine with the lowest cost of energy, but maximizing the efficiency is an excellent criterion to use as a first pass in the design process. To test the capabilities of this optimization method, two conceptual rotors were designed which successfully met the design objectives.
A 3+1 dimensional viscous hydrodynamic code for relativistic heavy ion collisions
NASA Astrophysics Data System (ADS)
Karpenko, Iu.; Huovinen, P.; Bleicher, M.
2014-11-01
We describe the details of 3+1 dimensional relativistic hydrodynamic code for the simulations of quark-gluon/hadron matter expansion in ultra-relativistic heavy ion collisions. The code solves the equations of relativistic viscous hydrodynamics in the Israel-Stewart framework. With the help of ideal-viscous splitting, we keep the ability to solve the equations of ideal hydrodynamics in the limit of zero viscosities using a Godunov-type algorithm. Milne coordinates are used to treat the predominant expansion in longitudinal (beam) direction effectively. The results are successfully tested against known analytical relativistic inviscid and viscous solutions, as well as against existing 2+1D relativistic viscous code. Catalogue identifier: AETZ_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AETZ_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 13 825 No. of bytes in distributed program, including test data, etc.: 92 750 Distribution format: tar.gz Programming language: C++. Computer: any with a C++ compiler and the CERN ROOT libraries. Operating system: tested on GNU/Linux Ubuntu 12.04 x64 (gcc 4.6.3), GNU/Linux Ubuntu 13.10 (gcc 4.8.2), Red Hat Linux 6 (gcc 4.4.7). RAM: scales with the number of cells in hydrodynamic grid; 1900 Mbytes for 3D 160×160×100 grid. Classification: 1.5, 4.3, 12. External routines: CERN ROOT (http://root.cern.ch), Gnuplot (http://www.gnuplot.info/) for plotting the results. Nature of problem: relativistic hydrodynamical description of the 3-dimensional quark-gluon/hadron matter expansion in ultra-relativistic heavy ion collisions. Solution method: finite volume Godunov-type method. Running time: scales with the number of hydrodynamic cells; typical running times on Intel(R) Core(TM) i7-3770 CPU @ 3.40 GHz, single thread mode, 160
A smooth particle hydrodynamics code to model collisions between solid, self-gravitating objects
NASA Astrophysics Data System (ADS)
Schäfer, C.; Riecker, S.; Maindl, T. I.; Speith, R.; Scherrer, S.; Kley, W.
2016-05-01
Context. Modern graphics processing units (GPUs) lead to a major increase in the performance of the computation of astrophysical simulations. Owing to the different nature of GPU architecture compared to traditional central processing units (CPUs) such as x86 architecture, existing numerical codes cannot be easily migrated to run on GPU. Here, we present a new implementation of the numerical method smooth particle hydrodynamics (SPH) using CUDA and the first astrophysical application of the new code: the collision between Ceres-sized objects. Aims: The new code allows for a tremendous increase in speed of astrophysical simulations with SPH and self-gravity at low costs for new hardware. Methods: We have implemented the SPH equations to model gas, liquids and elastic, and plastic solid bodies and added a fragmentation model for brittle materials. Self-gravity may be optionally included in the simulations and is treated by the use of a Barnes-Hut tree. Results: We find an impressive performance gain using NVIDIA consumer devices compared to our existing OpenMP code. The new code is freely available to the community upon request. If you are interested in our CUDA SPH code miluphCUDA, please write an email to Christoph Schäfer. miluphCUDA is the CUDA port of miluph. miluph is pronounced [maßl2v]. We do not support the use of the code for military purposes.
A smooth particle hydrodynamics code to model collisions between solid, self-gravitating objects
NASA Astrophysics Data System (ADS)
Schäfer, C.; Riecker, S.; Maindl, T. I.; Speith, R.; Scherrer, S.; Kley, W.
2016-04-01
Context. Modern graphics processing units (GPUs) lead to a major increase in the performance of the computation of astrophysical simulations. Owing to the different nature of GPU architecture compared to traditional central processing units (CPUs) such as x86 architecture, existing numerical codes cannot be easily migrated to run on GPU. Here, we present a new implementation of the numerical method smooth particle hydrodynamics (SPH) using CUDA and the first astrophysical application of the new code: the collision between Ceres-sized objects. Aims: The new code allows for a tremendous increase in speed of astrophysical simulations with SPH and self-gravity at low costs for new hardware. Methods: We have implemented the SPH equations to model gas, liquids and elastic, and plastic solid bodies and added a fragmentation model for brittle materials. Self-gravity may be optionally included in the simulations and is treated by the use of a Barnes-Hut tree. Results: We find an impressive performance gain using NVIDIA consumer devices compared to our existing OpenMP code. The new code is freely available to the community upon request. If you are interested in our CUDA SPH code miluphCUDA, please write an email to Christoph Schäfer. miluphCUDA is the CUDA port of miluph. miluph is pronounced [maßl2v]. We do not support the use of the code for military purposes.
Simulation of a ceramic impact experiment using the SPHINX smooth particle hydrodynamics code
Mandell, D.A.; Wingate, C.A.; Schwalbe, L.A.
1996-08-01
We are developing statistically based, brittle-fracture models and are implementing them into hydrocodes that can be used for designing systems with components of ceramics, glass, and/or other brittle materials. Because of the advantages it has simulating fracture, we are working primarily with the smooth particle hydrodynamics code SPHINX. We describe a new brittle fracture model that we have implemented into SPHINX, and we discuss how the model differs from others. To illustrate the code`s current capability, we simulate an experiment in which a tungsten rod strikes a target of heavily confined ceramic. Simulations in 3D at relatively coarse resolution yield poor results. However, 2D plane-strain approximations to the test produce crack patterns that are strikingly similar to the data, although the fracture model needs further refinement to match some of the finer details. We conclude with an outline of plans for continuing research and development.
Investigating the Magnetorotational Instability with Dedalus, and Open-Souce Hydrodynamics Code
Burns, Keaton J; /UC, Berkeley, aff SLAC
2012-08-31
The magnetorotational instability is a fluid instability that causes the onset of turbulence in discs with poloidal magnetic fields. It is believed to be an important mechanism in the physics of accretion discs, namely in its ability to transport angular momentum outward. A similar instability arising in systems with a helical magnetic field may be easier to produce in laboratory experiments using liquid sodium, but the applicability of this phenomenon to astrophysical discs is unclear. To explore and compare the properties of these standard and helical magnetorotational instabilities (MRI and HRMI, respectively), magnetohydrodynamic (MHD) capabilities were added to Dedalus, an open-source hydrodynamics simulator. Dedalus is a Python-based pseudospectral code that uses external libraries and parallelization with the goal of achieving speeds competitive with codes implemented in lower-level languages. This paper will outline the MHD equations as implemented in Dedalus, the steps taken to improve the performance of the code, and the status of MRI investigations using Dedalus.
Mandell, D.A.; Wingate, C.A.
1994-08-01
The design of many military devices involves numerical predictions of the material strength and fracture of brittle materials. The materials of interest include ceramics, that are used in armor packages; glass that is used in truck and jeep windshields and in helicopters; and rock and concrete that are used in underground bunkers. As part of a program to develop advanced hydrocode design tools, the authors have implemented a brittle fracture model for glass into the SPHINX smooth particle hydrodynamics code. The authors have evaluated this model and the code by predicting data from one-dimensional flyer plate impacts into glass, and data from tungsten rods impacting glass. Since fractured glass properties, which are needed in the model, are not available, the authors did sensitivity studies of these properties, as well as sensitivity studies to determine the number of particles needed in the calculations. The numerical results are in good agreement with the data.
Mandell, D.A.; Wingate, C.A.; Stellingwwerf, R.F.
1995-12-31
The design of many devices involves numerical predictions of the material strength and fracture of brittle materials. The materials of interest include ceramics that are used in armor packages; glass that is used in windshields; and rock and concrete that are used in oil wells. As part of a program to develop advanced hydrocode design tools, the authors have implemented a brittle fracture model for glass into the SPHINX smooth particle hydrodynamics code. The authors have evaluated this model and the code by predicting data from tungsten rods impacting glass. Since fractured glass properties, which are needed in the model, are not available, they did sensitivity studies of these properties, as well as sensitivity studies to determine the number of particles needed in the calculations. The numerical results are in good agreement with the data.
CASTRO: A New AMR Radiation-Hydrodynamics Code for Compressible Astrophysics
NASA Astrophysics Data System (ADS)
Almgren, Ann; Bell, J.; Day, M.; Howell, L.; Joggerst, C.; Myra, E.; Nordhaus, J.; Singer, M.; Zingale, M.
2010-01-01
CASTRO is a new, multi-dimensional, Eulerian AMR radiation-hydrodynamics code designed for astrophysical simulations. The code includes routines for various equations of state and nuclear reaction networks, and can be used with Cartesian, cylindrical or spherical coordinates. Time integration of the hydrodynamics equations is based on a higher-order, unsplit Godunov scheme. Self-gravity can be calculated on the adaptive hierarchy using a simple monopole approximation or a full Poisson solve for the potential. CASTRO includes gray and multigroup radiation diffusion. Multi-species neutrino diffusion for supernovae is nearing completion. The adaptive framework of CASTRO is based on an time-evolving hierarchy of nested rectangular grids with refinement in both space and time; the entire implementation is designed to run on thousands of processors. We describe in more detail how CASTRO is implemented and can be used for a number of different simulations. Our initial applications of CASTRO include Type Ia and Type II supernovae. This work has been supported by the SciDAC Program of the DOE Office of Mathematics, Information, and Computational Sciences under contracts No. DE-AC02-05CH11231 (LBNL), No. DE-FC02-06ER41438 (UCSC), and No. DE-AC52-07NA27344 (LLNL); and LLNL contracts B582735 and B574691(Stony Brook). Calculations shown were carried out on Franklin at NERSC.
A new multidimensional, energy-dependent two-moment transport code for neutrino-hydrodynamics
NASA Astrophysics Data System (ADS)
Just, O.; Obergaulinger, M.; Janka, H.-T.
2015-11-01
We present the new code ALCAR developed to model multidimensional, multienergy-group neutrino transport in the context of supernovae and neutron-star mergers. The algorithm solves the evolution equations of the zeroth- and first-order angular moments of the specific intensity, supplemented by an algebraic relation for the second-moment tensor to close the system. The scheme takes into account frame-dependent effects of the order O(v/c) as well as the most important types of neutrino interactions. The transport scheme is significantly more efficient than a multidimensional solver of the Boltzmann equation, while it is more accurate and consistent than the flux-limited diffusion method. The finite-volume discretization of the essentially hyperbolic system of moment equations employs methods well-known from hydrodynamics. For the time integration of the potentially stiff moment equations we employ a scheme in which only the local source terms are treated implicitly, while the advection terms are kept explicit, thereby allowing for an efficient computational parallelization of the algorithm. We investigate various problem set-ups in one and two dimensions to verify the implementation and to test the quality of the algebraic closure scheme. In our most detailed test, we compare a fully dynamic, one-dimensional core-collapse simulation with two published calculations performed with well-known Boltzmann-type neutrino-hydrodynamics codes and we find very satisfactory agreement.
Modeling The Shock Initiation of PBX-9501 in ALE3D
Leininger, L; Springer, H K; Mace, J; Mas, E
2008-07-01
The SMIS (Specific Munitions Impact Scenario) experimental series performed at Los Alamos National Laboratory has determined the 3-dimensional shock initiation behavior of the HMX-based heterogeneous high explosive, PBX 9501. A series of finite element impact calculations have been performed in the ALE3D [1] hydrodynamic code and compared to the SMIS results to validate the code predictions. The SMIS tests use a powder gun to shoot scaled NATO standard fragments at a cylinder of PBX 9501, which has a PMMA case and a steel impact cover. The SMIS real-world shot scenario creates a unique test-bed because many of the fragments arrive at the impact plate off-center and at an angle of impact. The goal of this model validation experiments is to demonstrate the predictive capability of the Tarver-Lee Ignition and Growth (I&G) reactive flow model [2] in this fully 3-dimensional regime of Shock to Detonation Transition (SDT). The 3-dimensional Arbitrary Lagrange Eulerian hydrodynamic model in ALE3D applies the Ignition and Growth (I&G) reactive flow model with PBX 9501 parameters derived from historical 1-dimensional experimental data. The model includes the off-center and angle of impact variations seen in the experiments. Qualitatively, the ALE3D I&G calculations accurately reproduce the 'Go/No-Go' threshold of the Shock to Detonation Transition (SDT) reaction in the explosive, as well as the case expansion recorded by a high-speed optical camera. Quantitatively, the calculations show good agreement with the shock time of arrival at internal and external diagnostic pins. This exercise demonstrates the utility of the Ignition and Growth model applied in a predictive fashion for the response of heterogeneous high explosives in the SDT regime.
Comparison among five hydrodynamic codes with a diverging-converging nozzle experiment
L. E. Thode; M. C. Cline; B. G. DeVolder; M. S. Sahota; D. K. Zerkle
1999-09-01
A realistic open-cycle gas-core nuclear rocket simulation model must be capable of a self-consistent nozzle calculation in conjunction with coupled radiation and neutron transport in three spatial dimensions. As part of the development effort for such a model, five hydrodynamic codes were used to compare with a converging-diverging nozzle experiment. The codes used in the comparison are CHAD, FLUENT, KIVA2, RAMPANT, and VNAP2. Solution accuracy as a function of mesh size is important because, in the near term, a practical three-dimensional simulation model will require rather coarse zoning across the nozzle throat. In the study, four different grids were considered. (1) coarse, radially uniform grid, (2) coarse, radially nonuniform grid, (3) fine, radially uniform grid, and (4) fine, radially nonuniform grid. The study involves code verification, not prediction. In other words, the authors know the solution they want to match, so they can change methods and/or modify an algorithm to best match this class of problem. In this context, it was necessary to use the higher-order methods in both FLUENT and RAMPANT. In addition, KIVA2 required a modification that allows significantly more accurate solutions for a converging-diverging nozzle. From a predictive point of view, code accuracy with no tuning is an important result. The most accurate codes on a coarse grid, CHAD and VNAP2, did not require any tuning. Their main comparison among the codes was the radial dependence of the Mach number across the nozzle throat. All five codes yielded a very similar solution with fine, radially uniform and radially nonuniform grids. However, the codes yielded significantly different solutions with coarse, radially uniform and radially nonuniform grids. For all the codes, radially nonuniform zoning across the throat significantly increased solution accuracy with a coarse mesh. None of the codes agrees in detail with the weak shock located downstream of the nozzle throat, but all the
Evaluation of a Cray performance tool using a large hydrodynamics code
Lord, K.M.; Simmons, M.L.
1992-06-01
This paper will discuss one of these automatic tools that has been developed recently by Cray Research, Inc. for use on its parallel supercomputer. The tool is called ATEXPERT; when used in conjunction with the Cray Fortran compiling system, CF77, it produces a parallelized version of a code based on loop-level parallelism, plus information to enable the programmer to optimize the parallelized code and improve performance. The information obtained through the use of the tool is presented in an easy-to-read graphical format, making the digestion of such a large quantity of data relatively easy and thus, improving programmer productivity. In this paper we address the issues that we found when the took a large Los Alamos hydrodynamics code, PUEBLO, that was highly vectorizable, but not parallelized, and using ATEXPERT proceeded to parallelize it. We show that through the advice of ATEXPERT, bottlenecks in the code can be found, leading to improved performance. We also show the dependence of performance on problem size, and finally, we contrast the speedup predicted by ATEXPERT with that measured on a dedicated eight-processor Y-MP.
MULTI2D - a computer code for two-dimensional radiation hydrodynamics
NASA Astrophysics Data System (ADS)
Ramis, R.; Meyer-ter-Vehn, J.; Ramírez, J.
2009-06-01
Simulation of radiation hydrodynamics in two spatial dimensions is developed, having in mind, in particular, target design for indirectly driven inertial confinement energy (IFE) and the interpretation of related experiments. Intense radiation pulses by laser or particle beams heat high-Z target configurations of different geometries and lead to a regime which is optically thick in some regions and optically thin in others. A diffusion description is inadequate in this situation. A new numerical code has been developed which describes hydrodynamics in two spatial dimensions (cylindrical R-Z geometry) and radiation transport along rays in three dimensions with the 4 π solid angle discretized in direction. Matter moves on a non-structured mesh composed of trilateral and quadrilateral elements. Radiation flux of a given direction enters on two (one) sides of a triangle and leaves on the opposite side(s) in proportion to the viewing angles depending on the geometry. This scheme allows to propagate sharply edged beams without ray tracing, though at the price of some lateral diffusion. The algorithm treats correctly both the optically thin and optically thick regimes. A symmetric semi-implicit (SSI) method is used to guarantee numerical stability. Program summaryProgram title: MULTI2D Catalogue identifier: AECV_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AECV_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 151 098 No. of bytes in distributed program, including test data, etc.: 889 622 Distribution format: tar.gz Programming language: C Computer: PC (32 bits architecture) Operating system: Linux/Unix RAM: 2 Mbytes Word size: 32 bits Classification: 19.7 External routines: X-window standard library (libX11.so) and corresponding heading files (X11/*.h) are
Three-dimensional hydrodynamic Bondi-Hoyle accretion. 1: Code validation and stationary accretors
NASA Technical Reports Server (NTRS)
Ruffert, Maximilian
1994-01-01
We investigate the hydrodynamics of three-dimensional classical Bondi-Hoyle accretion. Totally absorbing stationary spheres of varying sizes (from 10.0 down to 0.02 Bondi radii) accrete matter from a homogeneous and slightly perturbed medium, which is taken to be an ideal gas (gamma = 5/3 or 1.2). To accommodate the long-range gravitational forces, the extent of the computational volume is typically a factor of 100 larger than the radius of the accretor. We compare the numerical mass accretion rates with the theoretical predictions of Bondi, to assess the validity of the code. The hydrodynamics is modeled by the piecewise parabolic method. No energy sources (nuclear burning) or sinks (radiation, conduction) are included. The resolution in the vicinity of the accretor is increased by multiply nesting several (6-8) grids around the stationary sphere, each finer grid being a factor of 2 smaller spatially than the next coarser grid. This allows us to include a coarse model for the surface of the accretor (vacuum sphere) on the finest grid while at the same time evolving the gas on the coarser grids. The accretion rates derived numerically are in in very good agreement (to about 10% over several orders of magnitude) with the values given by Bondi for a stationary accretor within a hydrodynamic medium. However, the equations have to be changed in order to include the finite size of the accretor (in some cases very large compared to the sonic point or even to the Bondi radius).
Introducing Flow-er: a Hydrodynamics Code for Relativistic and Newtonian Flows
NASA Astrophysics Data System (ADS)
Motl, P. M.; Tohline, J. E.; Lehner, L.
2005-12-01
We present a new numerical code (Flow-er) for calculating astrophysical flows in 1, 2 or 3 dimensions. We have implemented equations appropriate for the treatment of Newtonian gravity as well as the general relativistic formalism to treat flows with either a static or dynamic metric. The heart of the code is the recent non-oscillatory central difference scheme by Kurganov and Tadmor (2000; hereafter KT). With this technique, we do not require a characteristic decomposition or the solution of Riemann problems that are required by most other high resolution, shock capturing techniques. Furthermore, the KT scheme naturally incorporates the Method of Lines, allowing considerable flexibility in the choice of time integrators. We have implemented several interpolation kernels that allow us to choose the spatial accuracy of an evolution. Through the Cactus framework or independent code, Flow-er serves as a driver for the hydrodynamical portion of a simulation utilizing adaptive mesh refinement or on a unigrid. In addition to describing Flow-er, we present results from several test problems. We are pleased to acknowledge support for this work from the National Science Foundation through grants PHY-0326311 and AST-0407070.
NASA Astrophysics Data System (ADS)
Zimmer, Peter C.; McGraw, J. T.; Gimmestad, G. G.; Roberts, D.; Stewart, J.; Smith, J.; Fitch, J.
2007-12-01
ALE (Astronomical LIDAR for Extinction) is deployed at the University of New Mexico's (UNM) Campus Observatory in Albuquerque, NM. It has begun a year-long testing phase prior deployment at McDonald Observatory in support of the CCD/Transit Instrument II (CTI-II). ALE is designed to produce a high-precision measurement of atmospheric absorption and scattering above the observatory site every ten minutes of every moderately clear night. LIDAR (LIght Detection And Ranging) is the VIS/UV/IR analog of radar, using a laser, telescope and time-gated photodetector instead of a radio transmitter, dish and receiver. In the case of ALE -- an elastic backscatter LIDAR -- 20ns-long, eye-safe laser pulses are launched 2500 times per second from a 0.32m transmitting telescope co-mounted with a 50mm short-range receiver on an alt-az mounted 0.67m long-range receiver. Photons from the laser pulse are scattered and absorbed as the pulse propagates through the atmosphere, a portion of which are scattered into the field of view of the short- and long-range receiver telescopes and detected by a photomultiplier. The properties of a given volume of atmosphere along the LIDAR path are inferred from both the altitude-resolved backscatter signal as well as the attenuation of backscatter signal from altitudes above it. We present ALE profiles from the commissioning phase and demonstrate some of the astronomically interesting atmospheric information that can be gleaned from these data, including, but not limited to, total line-of-sight extinction. This project is funded by NSF Grant 0421087.
NASA Astrophysics Data System (ADS)
Kennedy, Lynn W.; Schneider, Kenneth D.
1990-07-01
A large-sclae test of the detonation of 20,000 kilograms of high explosive inside a shallow underground tunnel/chamber complex, simulating an ammunition storage magazine, was carried out in August, 1988, at the Naval Weapons Center, China Lake, California. The test was jointly sponsored by the U.S. Department of Defense Explosives Safety Board; the Safety Services Organisation of the Ministry of Defence, United Kingdom; and the Norwegian Defence Construction Service. The overall objective of the test was to determine the hazardous effects (debris, airblast, and ground motion) produced in this configuration. Actual storage magazines have considerably more overburden and are expected to contain and accidental detonation. The test configuration, on the other hand, was expected to rupture, and to scatter a significant amount of rocks, dirt and debris. Among the observations and measurements made in this test was study of airblast propagation within the storage chamber, in the access tunnel, and outside, on the tunnel ramp, prior to overburden venting. The results of these observations are being used to evaluate and validate current quantity-distance standards for the underground storage of munitions near inabited structures. As part of the prediction effort for this test, to assist with transducer ranging in the access tunnel and with post-test interpretation of the results, S-CUBED was asked to perform two-dimensional inviscid hydrodynamic code calculations of the explosive detonation and subsequent blastwave propagation in the interior chamber and access tunnel. This was accomplished using the S-CUBED Hydrodynamic Advanced Research Code (SHARC). In this paper, details of the calculations configuration will be presented. These will be compared to the actual as-built internal configuration of the tunnel/chamber complex. Results from the calculations, including contour plots and airblast waveforms, will be shown. The latter will be compared with experimental records
Introducing Flow-er: a Hydrodynamics Code for Relativistic and Newtonian Flows
NASA Astrophysics Data System (ADS)
Motl, Patrick; Olabarrieta, Ignacio; Tohline, Joel
2006-04-01
We present a new numerical code (Flow-er) for calculating astrophysical flows in 1, 2 or 3 dimensions. We have implemented equations appropriate for the treatment of Newtonian gravity as well as the general relativistic formalism to treat flows with either a static or dynamic metric. The heart of the code is the recent non-oscillatory central difference scheme by Kurganov and Tadmor (2000). With this technique, we do not require a characteristic decomposition or the solution of Riemann problems that are required by most other high resolution, shock capturing techniques. Furthermore, the KT scheme naturally incorporates the Method of Lines, allowing considerable flexibility in the choice of time integrators. We have implemented several interpolation kernels that allow us to choose the spatial accuracy of an evolution. Flow-er has been tested against an independent implementation of the KT scheme to solve the relativistic equations in 1d - which we also describe. Flow-er can serve as the driver for the hydrodynamical portion of a simulation utilizing adaptive mesh refinement or on a unigrid. In addition to describing Flow-er, we present results from several test problems.
FORCE2: A state-of-the-art two-phase code for hydrodynamic calculations
Ding, Jianmin; Lyczkowski, R.W.; Burge, S.W.
1993-02-01
A three-dimensional computer code for two-phase flow named FORCE2 has been developed by Babcock and Wilcox (B & W) in close collaboration with Argonne National Laboratory (ANL). FORCE2 is capable of both transient as well as steady-state simulations. This Cartesian coordinates computer program is a finite control volume, industrial grade and quality embodiment of the pilot-scale FLUFIX/MOD2 code and contains features such as three-dimensional blockages, volume and surface porosities to account for various obstructions in the flow field, and distributed resistance modeling to account for pressure drops caused by baffles, distributor plates and large tube banks. Recently computed results demonstrated the significance of and necessity for three-dimensional models of hydrodynamics and erosion. This paper describes the process whereby ANL`s pilot-scale FLUFIX/MOD2 models and numerics were implemented into FORCE2. A description of the quality control to assess the accuracy of the new code and the validation using some of the measured data from Illinois Institute of Technology (UT) and the University of Illinois at Urbana-Champaign (UIUC) are given. It is envisioned that one day, FORCE2 with additional modules such as radiation heat transfer, combustion kinetics and multi-solids together with user-friendly pre- and post-processor software and tailored for massively parallel multiprocessor shared memory computational platforms will be used by industry and researchers to assist in reducing and/or eliminating the environmental and economic barriers which limit full consideration of coal, shale and biomass as energy sources, to retain energy security, and to remediate waste and ecological problems.
FORCE2: A state-of-the-art two-phase code for hydrodynamic calculations
Ding, Jianmin; Lyczkowski, R.W. ); Burge, S.W. . Research Center)
1993-02-01
A three-dimensional computer code for two-phase flow named FORCE2 has been developed by Babcock and Wilcox (B W) in close collaboration with Argonne National Laboratory (ANL). FORCE2 is capable of both transient as well as steady-state simulations. This Cartesian coordinates computer program is a finite control volume, industrial grade and quality embodiment of the pilot-scale FLUFIX/MOD2 code and contains features such as three-dimensional blockages, volume and surface porosities to account for various obstructions in the flow field, and distributed resistance modeling to account for pressure drops caused by baffles, distributor plates and large tube banks. Recently computed results demonstrated the significance of and necessity for three-dimensional models of hydrodynamics and erosion. This paper describes the process whereby ANL's pilot-scale FLUFIX/MOD2 models and numerics were implemented into FORCE2. A description of the quality control to assess the accuracy of the new code and the validation using some of the measured data from Illinois Institute of Technology (UT) and the University of Illinois at Urbana-Champaign (UIUC) are given. It is envisioned that one day, FORCE2 with additional modules such as radiation heat transfer, combustion kinetics and multi-solids together with user-friendly pre- and post-processor software and tailored for massively parallel multiprocessor shared memory computational platforms will be used by industry and researchers to assist in reducing and/or eliminating the environmental and economic barriers which limit full consideration of coal, shale and biomass as energy sources, to retain energy security, and to remediate waste and ecological problems.
Multi-Material ALE with AMR for Modeling Hot Plasmas and Cold Fragmenting Materials
NASA Astrophysics Data System (ADS)
Alice, Koniges; Nathan, Masters; Aaron, Fisher; David, Eder; Wangyi, Liu; Robert, Anderson; David, Benson; Andrea, Bertozzi
2015-02-01
We have developed a new 3D multi-physics multi-material code, ALE-AMR, which combines Arbitrary Lagrangian Eulerian (ALE) hydrodynamics with Adaptive Mesh Refinement (AMR) to connect the continuum to the microstructural regimes. The code is unique in its ability to model hot radiating plasmas and cold fragmenting solids. New numerical techniques were developed for many of the physics packages to work efficiently on a dynamically moving and adapting mesh. We use interface reconstruction based on volume fractions of the material components within mixed zones and reconstruct interfaces as needed. This interface reconstruction model is also used for void coalescence and fragmentation. A flexible strength/failure framework allows for pluggable material models, which may require material history arrays to determine the level of accumulated damage or the evolving yield stress in J2 plasticity models. For some applications laser rays are propagating through a virtual composite mesh consisting of the finest resolution representation of the modeled space. A new 2nd order accurate diffusion solver has been implemented for the thermal conduction and radiation transport packages. One application area is the modeling of laser/target effects including debris/shrapnel generation. Other application areas include warm dense matter, EUV lithography, and material wall interactions for fusion devices.
Kull ALE: II. Grid Motion on Unstructured Arbitrary Polyhedral Meshes
Anninos, P
2002-02-11
Several classes of mesh motion algorithms are presented for the remap phase of unstructured mesh ALE codes. The methods range from local shape optimization procedures to more complex variational minimization methods applied to arbitrary unstructured polyhedral meshes necessary for the Kull code.
NASA Astrophysics Data System (ADS)
Wani, Naveel; Maqbool, Bari; Iqbal, Naseer; Misra, Ranjeev
2016-07-01
X-ray binaries and AGNs are powered by accretion discs around compact objects, where the x-rays are emitted from the inner regions and uv emission arise from the relatively cooler outer parts. There has been an increasing evidence that the variability of the x-rays in different timescales is caused by stochastic fluctuations in the accretion disc at different radii. These fluctuations although arise in the outer parts of the disc but propagate inwards to give rise to x-ray variability and hence provides a natural connection between the x-ray and uv variability. There are analytical expressions to qualitatively understand the effect of these stochastic variabilities, but quantitative predictions are only possible by a detailed hydrodynamical study of the global time dependent solution of standard accretion disc. We have developed numerical efficient code (to incorporate all these effects), which considers gas pressure dominated solutions and stochastic fluctuations with the inclusion of boundary effect of the last stable orbit.
Implementation of the Turn Function Method in a three-dimensional, parallelized hydrodynamics code
NASA Astrophysics Data System (ADS)
Orourke, P. J.; Fairfield, M. S.
1992-08-01
The implementation of the Turn Function Method in KIVA-F90, a version of the KIVA computer program written in the FORTRAN 90 programming language that is used on some massively parallel computers is described. The Turn Function Method solves both linear momentum and vorticity equations in numerical calculations of compressible fluid flow. Solving a vorticity equation allows vorticity to be both conserved and transported more accurately than in traditional methods for computing compressible flow. This first implementation of the Turn Function Method in a three-dimensional hydrodynamics code involved some modification of the original method and some numerical difference approximations. In particular, a penalty method is used to keep the divergence of the computed vorticity field close to zero. Difference operators are also defined in such a way that the finite difference analog of del(del x u) = 0 is exactly satisfied. Three example problems show the increased computational cost and the accuracy to be gained by using the Turn Function Method in calculations of flows with rotational motion. Use of the Method can increase by 60 percent the computational times of the Euler equation solver in KIVA-F90, but it is concluded that this increased cost is justified by the increased accuracy.
Ramshaw, J D
2000-10-01
A simple model was recently described for predicting the time evolution of the width of the mixing layer at an unstable fluid interface [J. D. Ramshaw, Phys. Rev. E 58, 5834 (1998); ibid. 61, 5339 (2000)]. The ordinary differential equations of this model have been heuristically generalized into partial differential equations suitable for implementation in multicomponent hydrodynamics codes. The central ingredient in this generalization is a nun-diffusional expression for the species mass fluxes. These fluxes describe the relative motion of the species, and thereby determine the local mixing rate and spatial distribution of mixed fluid as a function of time. The generalized model has been implemented in a two-dimensional hydrodynamics code. The model equations and implementation procedure are summarized, and comparisons with experimental mixing data are presented.
ALE3D Simulations of Gap Closure and Surface Ignition for Cookoff Modeling
Howard, W M; McClelland, M A; Nichols, A L
2006-06-22
We are developing ALE3D models to describe the thermal, chemical and mechanical behavior during the heating, ignition and explosive phases of various cookoff phenomena. The candidate models and numerical strategies are being evaluated using benchmark cookoff experiments. ALE3D is a three-dimensional computer code capable of solving the model equations in a coupled fashion through all the phases of the cookoff in a single calculation. For the cookoff experiments, we are interested in representing behavior on widely varying timescales. We have used an implicit hydrodynamics option during the heating phase and an explicit solution method during the explosive phase. To complicate the modeling problem, high heat fluxes cause rapid temperature increases in boundary layers and lead to the formation of gaps between energetic and structural materials and ignition on surfaces. The initially solid energetic and structural materials react to produce gases, which fill the gaps. These materials can also melt and flow. Since an implicit solution method is used, simple no-strength materials models can no longer be used for liquids and gases. In this paper, we discuss and demonstrate choices of materials models for solid/liquid/gas mixtures to be used in conjunction with the implicit solution method. In addition, results are given for mesh movement strategies applied to the opening, closing, and surface ignition within gaps.
NASA Astrophysics Data System (ADS)
Sijoy, C. D.; Chaturvedi, S.
2016-06-01
Higher-order cell-centered multi-material hydrodynamics (HD) and parallel node-centered radiation transport (RT) schemes are combined self-consistently in three-temperature (3T) radiation hydrodynamics (RHD) code TRHD (Sijoy and Chaturvedi, 2015) developed for the simulation of intense thermal radiation or high-power laser driven RHD. For RT, a node-centered gray model implemented in a popular RHD code MULTI2D (Ramis et al., 2009) is used. This scheme, in principle, can handle RT in both optically thick and thin materials. The RT module has been parallelized using message passing interface (MPI) for parallel computation. Presently, for multi-material HD, we have used a simple and robust closure model in which common strain rates to all materials in a mixed cell is assumed. The closure model has been further generalized to allow different temperatures for the electrons and ions. In addition to this, electron and radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. This has been achieved by using a node-centered symmetric-semi-implicit (SSI) integration scheme. The electron thermal conduction is calculated using a cell-centered, monotonic, non-linear finite volume scheme (NLFV) suitable for unstructured meshes. In this paper, we have described the details of the 2D, 3T, non-equilibrium, multi-material RHD code developed with a special attention to the coupling of various cell-centered and node-centered formulations along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We also report the parallel performance of RT module. Finally, in order to demonstrate the full capability of the code implementation, we have presented the simulation of laser driven shock propagation in a layered thin foil. The simulation results are found to be in good
NASA Astrophysics Data System (ADS)
Sijoy, C. D.; Chaturvedi, S.
2016-06-01
Higher-order cell-centered multi-material hydrodynamics (HD) and parallel node-centered radiation transport (RT) schemes are combined self-consistently in three-temperature (3T) radiation hydrodynamics (RHD) code TRHD (Sijoy and Chaturvedi, 2015) developed for the simulation of intense thermal radiation or high-power laser driven RHD. For RT, a node-centered gray model implemented in a popular RHD code MULTI2D (Ramis et al., 2009) is used. This scheme, in principle, can handle RT in both optically thick and thin materials. The RT module has been parallelized using message passing interface (MPI) for parallel computation. Presently, for multi-material HD, we have used a simple and robust closure model in which common strain rates to all materials in a mixed cell is assumed. The closure model has been further generalized to allow different temperatures for the electrons and ions. In addition to this, electron and radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. This has been achieved by using a node-centered symmetric-semi-implicit (SSI) integration scheme. The electron thermal conduction is calculated using a cell-centered, monotonic, non-linear finite volume scheme (NLFV) suitable for unstructured meshes. In this paper, we have described the details of the 2D, 3T, non-equilibrium, multi-material RHD code developed with a special attention to the coupling of various cell-centered and node-centered formulations along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We also report the parallel performance of RT module. Finally, in order to demonstrate the full capability of the code implementation, we have presented the simulation of laser driven shock propagation in a layered thin foil. The simulation results are found to be in good
Energy Science and Technology Software Center (ESTSC)
1986-12-01
Version 00 The MEDUSA-IB code performs implosion and thermonuclear burn calculations of an ion beam driven ICF target, based on one-dimensional plasma hydrodynamics and transport theory. It can calculate the following values in spherical geometry through the progress of implosion and fuel burnup of a multi-layered target. (1) Hydrodynamic velocities, density, ion, electron and radiation temperature, radiation energy density, Rs and burn rate of target as a function of coordinates and time, (2) Fusion gainmore » as a function of time, (3) Ionization degree, (4) Temperature dependent ion beam energy deposition, (5) Radiation, -particle and neutron spectra as a function of time.« less
Diffusive mesh relaxation in ALE finite element numerical simulations
Dube, E.I.
1996-06-01
The theory for a diffusive mesh relaxation algorithm is developed for use in three-dimensional Arbitary Lagrange/Eulerian (ALE) finite element simulation techniques. This mesh relaxer is derived by a variational principle for an unstructured 3D grid using finite elements, and incorporates hourglass controls in the numerical implementation. The diffusive coefficients are based on the geometric properties of the existing mesh, and are chosen so as to allow for a smooth grid that retains the general shape of the original mesh. The diffusive mesh relaxation algorithm is then applied to an ALE code system, and results from several test cases are discussed.
Recent Hydrodynamics Improvements to the RELAP5-3D Code
Richard A. Riemke; Cliff B. Davis; Richard.R. Schultz
2009-07-01
The hydrodynamics section of the RELAP5-3D computer program has been recently improved. Changes were made as follows: (1) improved turbine model, (2) spray model for the pressurizer model, (3) feedwater heater model, (4) radiological transport model, (5) improved pump model, and (6) compressor model.
Cholla: 3D GPU-based hydrodynamics code for astrophysical simulation
NASA Astrophysics Data System (ADS)
Schneider, Evan E.; Robertson, Brant E.
2016-07-01
Cholla (Computational Hydrodynamics On ParaLLel Architectures) models the Euler equations on a static mesh and evolves the fluid properties of thousands of cells simultaneously using GPUs. It can update over ten million cells per GPU-second while using an exact Riemann solver and PPM reconstruction, allowing computation of astrophysical simulations with physically interesting grid resolutions (>256^3) on a single device; calculations can be extended onto multiple devices with nearly ideal scaling beyond 64 GPUs.
ALE: Astronomical LIDAR for Extinction
NASA Astrophysics Data System (ADS)
Zimmer, Peter C.; McGraw, J. T.; Gimmestad, G.; Roberts, D.; Stewart, J.; Dawsey, M.; Fitch, J.; Smith, J.; Townsend, A.; Black, B.
2006-12-01
The primary impediment to precision all-sky photometry is the scattering or absorption of incoming starlight by the aerosols suspended in, and the molecules of, the Earth's atmosphere. The University of New Mexico (UNM) and the Georgia Tech Research Institute (GTRI) are currently developing the Astronomical LIDAR (LIght Detection And Ranging) for Extinction (ALE), which is undergoing final integration and initial calibration at UNM. ALE is based upon a 527nm laser operated at a pulse repetition rate of 1500 pps, and rendered eyesafe by expanding its beam through a 32cm diameter transmitter. The alt-az mounted ALE will operate in multiple modes, including mapping the sky to obtain a quantitative measurement of extinction sources, measuring a monochromatic extinction coefficient by producing Langely plots, and monitoring extinction in the direction in which a telescope is observing. A primary goal is to use the Rayleigh scattered LIDAR return from air above 20km as a quasi-constant illumination source. Air above this altitude is generally free from aerosols and the variations in density are relatively constant over intervals of a few minutes. When measured at several zenith angles, the integrated line-of-sight extinction can be obtained from a simple model fit of these returns. The 69 microjoule exit pulse power and 0.6m aperture receiver will allow ALE to collect approximately one million photons per minute from above 20km, enough to enable measurements of the monochromatic vertical extinction to better than 1% under photometric conditions. Along the way, ALE will also provide a plethora of additional information about the vertical and horizontal distributions of low-lying aerosols, dust or smoke in the free troposphere, and high cirrus, as well as detect the passage of boundary layer atmospheric gravity waves. This project is funded by NSF Grant 0421087.
NASA Astrophysics Data System (ADS)
Müller, Bernhard; Janka, Hans-Thomas; Dimmelmeier, Harald
2010-07-01
We present a new general relativistic code for hydrodynamical supernova simulations with neutrino transport in spherical and azimuthal symmetry (one dimension and two dimensions, respectively). The code is a combination of the COCONUT hydro module, which is a Riemann-solver-based, high-resolution shock-capturing method, and the three-flavor, fully energy-dependent VERTEX scheme for the transport of massless neutrinos. VERTEX integrates the coupled neutrino energy and momentum equations with a variable Eddington factor closure computed from a model Boltzmann equation and uses the "ray-by-ray plus" approximation in two dimensions, assuming the neutrino distribution to be axially symmetric around the radial direction at every point in space, and thus the neutrino flux to be radial. Our spacetime treatment employs the Arnowitt-Deser-Misner 3+1 formalism with the conformal flatness condition for the spatial three metric. This approach is exact for the one-dimensional case and has previously been shown to yield very accurate results for spherical and rotational stellar core collapse. We introduce new formulations of the energy equation to improve total energy conservation in relativistic and Newtonian hydro simulations with grid-based Eulerian finite-volume codes. Moreover, a modified version of the VERTEX scheme is developed that simultaneously conserves energy and lepton number in the neutrino transport with better accuracy and higher numerical stability in the high-energy tail of the spectrum. To verify our code, we conduct a series of tests in spherical symmetry, including a detailed comparison with published results of the collapse, shock formation, shock breakout, and accretion phases. Long-time simulations of proto-neutron star cooling until several seconds after core bounce both demonstrate the robustness of the new COCONUT-VERTEX code and show the approximate treatment of relativistic effects by means of an effective relativistic gravitational potential as in
Mueller, Bernhard; Janka, Hans-Thomas; Dimmelmeier, Harald E-mail: thj@mpa-garching.mpg.d
2010-07-15
We present a new general relativistic code for hydrodynamical supernova simulations with neutrino transport in spherical and azimuthal symmetry (one dimension and two dimensions, respectively). The code is a combination of the COCONUT hydro module, which is a Riemann-solver-based, high-resolution shock-capturing method, and the three-flavor, fully energy-dependent VERTEX scheme for the transport of massless neutrinos. VERTEX integrates the coupled neutrino energy and momentum equations with a variable Eddington factor closure computed from a model Boltzmann equation and uses the 'ray-by-ray plus' approximation in two dimensions, assuming the neutrino distribution to be axially symmetric around the radial direction at every point in space, and thus the neutrino flux to be radial. Our spacetime treatment employs the Arnowitt-Deser-Misner 3+1 formalism with the conformal flatness condition for the spatial three metric. This approach is exact for the one-dimensional case and has previously been shown to yield very accurate results for spherical and rotational stellar core collapse. We introduce new formulations of the energy equation to improve total energy conservation in relativistic and Newtonian hydro simulations with grid-based Eulerian finite-volume codes. Moreover, a modified version of the VERTEX scheme is developed that simultaneously conserves energy and lepton number in the neutrino transport with better accuracy and higher numerical stability in the high-energy tail of the spectrum. To verify our code, we conduct a series of tests in spherical symmetry, including a detailed comparison with published results of the collapse, shock formation, shock breakout, and accretion phases. Long-time simulations of proto-neutron star cooling until several seconds after core bounce both demonstrate the robustness of the new COCONUT-VERTEX code and show the approximate treatment of relativistic effects by means of an effective relativistic gravitational potential as in
Hallquist, J.O.
1982-02-01
This revised report provides an updated user's manual for DYNA2D, an explicit two-dimensional axisymmetric and plane strain finite element code for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. A contact-impact algorithm permits gaps and sliding along material interfaces. By a specialization of this algorithm, such interfaces can be rigidly tied to admit variable zoning without the need of transition regions. Spatial discretization is achieved by the use of 4-node solid elements, and the equations-of motion are integrated by the central difference method. An interactive rezoner eliminates the need to terminate the calculation when the mesh becomes too distorted. Rather, the mesh can be rezoned and the calculation continued. The command structure for the rezoner is described and illustrated by an example.
NASA Astrophysics Data System (ADS)
Stone, James M.; Norman, Michael L.
1992-06-01
A detailed description of ZEUS-2D, a numerical code for the simulation of fluid dynamical flows including a self-consistent treatment of the effects of magnetic fields and radiation transfer is presented. Attention is given to the hydrodynamic (HD) algorithms which form the foundation for the more complex MHD and radiation HD algorithms. The effect of self-gravity on the flow dynamics is accounted for by an iterative solution of the sparse-banded matrix resulting from discretizing the Poisson equation in multidimensions. The results of an extensive series of HD test problems are presented. A detailed description of the MHD algorithms in ZEUS-2D is presented. A new method of computing the electromotive force is developed using the method of characteristics (MOC). It is demonstrated through the results of an extensive series of MHD test problems that the resulting hybrid MOC-constrained transport method provides for the accurate evolution of all modes of MHD wave families.
ALES: An Innovative Argument-Learning Environment
ERIC Educational Resources Information Center
Abbas, Safia; Sawamura, Hajime
2010-01-01
This paper presents the development of an Argument-Learning System (ALES). The idea is based on the AIF (argumentation interchange format) ontology using "Walton theory". ALES uses different mining techniques to manage a highly structured arguments repository. This repository was designed, developed and implemented by the authors. The aim is to…
NASA Astrophysics Data System (ADS)
Cohen, Randi L.
There is both theoretical and observational evidence that giant planets collided with objects ≥ Mearth during their evolution. These impacts may play a key role in giant planet formation. This paper describes impacts of a ˜ Earth-mass object onto a suite of proto-giant-planets, as simulated using an SPH parallel tree code. We run 6 simulations, varying the impact angle and evolutionary stage of the proto-Jupiter. We find that it is possible for an impactor to free some mass from the core of the proto-planet it impacts through direct collision, as well as to make physical contact with the core yet escape partially, or even completely, intact. None of the 6 cases we consider produced a solid disk or resulted in a net decrease in the core mass of the pinto-planet (since the mass decrease due to disruption was outweighed by the increase due to the addition of the impactor's mass to the core). However, we suggest parameters which may have these effects, and thus decrease core mass and formation time in protoplanetary models and/or create satellite systems. We find that giant impacts can remove significant envelope mass from forming giant planets, leaving only 2 MEarth of gas, similar to Uranus and Neptune. They can also create compositional inhomogeneities in planetary cores, which creates differences in planetary thermal emission characteristics.
NASA Astrophysics Data System (ADS)
Cohen, R.; Bodenheimer, P.; Asphaug, E.
2000-12-01
There is both theoretical and observational evidence that giant planets collided with objects with mass >= Mearth during their evolution. These impacts may help shorten planetary formation timescales by changing the opacity of the planetary atmosphere to allow quicker cooling. They may also redistribute heavy metals within giant planets, affect the core/envelope mass ratio, and help determine the ratio of emitted to absorbed energy within giant planets. Thus, the researchers propose to simulate the impact of a ~ Earth-mass object onto a proto-giant-planet with SPH. Results of the SPH collision models will be input into a steady-state planetary evolution code and the effect of impacts on formation timescales, core/envelope mass ratios, density profiles, and thermal emissions of giant planets will be quantified. The collision will be modelled using a modified version of an SPH routine which simulates the collision of two polytropes. The Saumon-Chabrier and Tillotson equations of state will replace the polytropic equation of state. The parallel tree algorithm of Olson & Packer will be used for the domain decomposition and neighbor search necessary to calculate pressure and self-gravity efficiently. This work is funded by the NASA Graduate Student Researchers Program.
NASA Astrophysics Data System (ADS)
Baiotti, Luca; Shibata, Masaru; Yamamoto, Tetsuro
2010-09-01
We present the first quantitative comparison of two independent general-relativistic hydrodynamics codes, the whisky code and the sacra code. We compare the output of simulations starting from the same initial data and carried out with the configuration (numerical methods, grid setup, resolution, gauges) which for each code has been found to give consistent and sufficiently accurate results, in particular, in terms of cleanness of gravitational waveforms. We focus on the quantities that should be conserved during the evolution (rest mass, total mass energy, and total angular momentum) and on the gravitational-wave amplitude and frequency. We find that the results produced by the two codes agree at a reasonable level, with variations in the different quantities but always at better than about 10%.
Advanced life events (ALEs) that impede aging-in-place among seniors.
Lindquist, Lee A; Ramirez-Zohfeld, Vanessa; Sunkara, Priya; Forcucci, Chris; Campbell, Dianne; Mitzen, Phyllis; Cameron, Kenzie A
2016-01-01
Despite the wishes of many seniors to age-in-place in their own homes, critical events occur that impede their ability to do so. A gap exists as to what these advanced life events (ALEs) entail and the planning that older adults perceive is necessary. The purpose of this study was to identify seniors' perceptions and planning toward ALEs that may impact their ability to remain in their own home. We conducted focus groups with 68 seniors, age ≥65 years (mean age 73.8 years), living in the community (rural, urban, and suburban), using open-ended questions about perceptions of future heath events, needs, and planning. Three investigators coded transcriptions using constant comparative analysis to identify emerging themes, with disagreements resolved via consensus. Subjects identified five ALEs that impacted their ability to remain at home: (1) Hospitalizations, (2) Falls, (3) Dementia, (4) Spousal Loss, and (5) Home Upkeep Issues. While recognizing that ALEs frequently occur, many subjects reported a lack of planning for ALEs and perceived that these ALEs would not happen to them. Themes for the rationale behind the lack of planning emerged as: uncertainty in future, being too healthy/too sick, offspring influences, denial/procrastination, pride, feeling overwhelmed, and financial concerns. Subjects expressed reliance on offspring for navigating future ALEs, although many had not communicated their needs with their offspring. Overcoming the reasons for not planning for ALEs is crucial, as being prepared for future home needs provides seniors a voice in their care while engaging key supporters (e.g., offspring). PMID:26952382
A general higher-order remap algorithm for ALE calculations
Chiravalle, Vincent P
2011-01-05
A numerical technique for solving the equations of fluid dynamics with arbitrary mesh motion is presented. The three phases of the Arbitrary Lagrangian Eulerian (ALE) methodology are outlined: the Lagrangian phase, grid relaxation phase and remap phase. The Lagrangian phase follows a well known approach from the HEMP code; in addition the strain rate andflow divergence are calculated in a consistent manner according to Margolin. A donor cell method from the SALE code forms the basis of the remap step, but unlike SALE a higher order correction based on monotone gradients is also added to the remap. Four test problems were explored to evaluate the fidelity of these numerical techniques, as implemented in a simple test code, written in the C programming language, called Cercion. Novel cell-centered data structures are used in Cercion to reduce the complexity of the programming and maximize the efficiency of memory usage. The locations of the shock and contact discontinuity in the Riemann shock tube problem are well captured. Cercion demonstrates a high degree of symmetry when calculating the Sedov blast wave solution, with a peak density at the shock front that is similar to the value determined by the RAGE code. For a flyer plate test problem both Cercion and FLAG give virtually the same velocity temporal profile at the target-vacuum interface. When calculating a cylindrical implosion of a steel shell, Cercion and FLAG agree well and the Cercion results are insensitive to the use of ALE.
Cookoff response of PBXN-109: material characterization and ALE3D model
McClelland, M A; Tran, T D; Cunningham, B J; Weese, R K; Maienschein, J L
2000-10-24
Materials properties measurements are made for the RDX-based explosive, PBXN-109, and an initial ALE3D model for cookoff is discussed. A significant effort is underway in the U.S. Navy and Department of Energy (DOE) laboratories to understand the thermal explosion behavior of this material. Benchmark cookoff experiments are being performed by the U.S. Navy to validate DOE materials models and computer codes. The ALE3D computer code can model the coupled thermal, mechanical, and chemical behavior of heating and ignition in cookoff tests. In order to provide a predictive capability, materials characterization measurements are being performed to specify parameters in these models. We report on progress in the development of these ALE3D materials models and present measurements as a function of temperature for thermal expansion, heat capacity, shear modulus, bulk modulus, and One-Dimensional-Time-to-Explosion (ODTX).
Gurson's Model: ALE Formulation and Strain Localization
Cunda, Luiz A. B. da; Creus, Guillermo J.
2007-05-17
This paper presents a brief review of Gurson's damage model, employed to describes the strength degradation in ductile metals submitted to large plastic deformations. The damage model is applied using finite elements and an Arbitrary Lagrangian-Eulerian formulation (ALE), to ensure a better quality to the finite elements mesh. The study of the combined application of ALE and Gurson approach to damage modeling and strain localization is the object of this paper.
Durisen, R.H.; Gingold, R.A.; Tohline, J.E.; Boss, A.P.
1986-06-01
The effectiveness of three different hydrodynamics models is evaluated for the analysis of the effects of fission instabilities in rapidly rotating, equilibrium flows. The instabilities arise in nonaxisymmetric Kelvin modes as rotational energy in the flow increases, which may occur in the formation of close binary stars and planets when the fluid proto-object contracts quasi-isostatically. Two finite-difference, donor-cell methods and a smoothed particle hydrodynamics (SPH) code are examined, using a polytropic index of 3/2 and ratios of total rotational kinetic energy to gravitational energy of 0.33 and 0.38. The models show that dynamic bar instabilities with the 3/2 polytropic index do not yield detached binaries and multiple systems. Ejected mass and angular momentum form two trailing spiral arms that become a disk or ring around the central remnant. The SPH code yields the same data as the finite difference codes but with less computational effort and without acceptable fluid constraints in low density regions. Methods for improving both types of codes are discussed. 68 references.
Shestakov, Aleksei I. Offner, Stella S.R.
2008-01-10
We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with Adaptive Mesh Refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate 'level-solve' packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation ({psi}tc). We analyze the magnitude of the {psi}tc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichlet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the 'partial temperature' scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of {psi}tc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates
Shestakov, A I; Offner, S R
2007-03-02
We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with adaptive mesh refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate 'level-solve' packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation ({Psi}tc). We analyze the magnitude of the {Psi}tc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the 'partial temperature' scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of {Psi}tc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates
NASA Astrophysics Data System (ADS)
Shestakov, Aleksei I.; Offner, Stella S. R.
2008-01-01
We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with Adaptive Mesh Refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate "level-solve" packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation (Ψtc). We analyze the magnitude of the Ψtc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichlet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the "partial temperature" scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of Ψtc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates the
Shestakov, A I; Offner, S R
2006-09-21
We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with adaptive mesh refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate 'level-solve' packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation ({Psi}tc). We analyze the magnitude of the {Psi}tc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the 'partial temperature' scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of {Psi}tc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates
3D Hydrodynamic Simulations with Yguazú-A Code to Model a Jet in a Galaxy Cluster
NASA Astrophysics Data System (ADS)
Haro-Corzo, S. A. R.; Velazquez, P.; Diaz, A.
2009-05-01
We present preliminary results for a galaxy's jet expanding into an intra-cluster medium (ICM). We attempt to model the jet-gas interaction and the evolution of a extragalactic collimated jet placed at center of computational grid, which it is modeled as a cylinder ejecting gas in the z-axis direction with fixed velocity. It has precession motion around z-axis (period of 10^5 sec.) and orbital motion in XY-plane (period of 500 yr.). This jet is embedded in the ICM, which is modeled as surrounding wind in the XZ plane. We carried out 3D hydrodynamical simulations using Yguazú-A code. This simulation do not include radiative losses. In order to compare the numerical results with observations, we generated synthetic X-ray emission images. X-ray observations with high-resolution of rich cluster of galaxies show diffuse emission with filamentary structure (sometimes called as cooling flow or X-ray filament). Radio observations show a jet-like emission of the central region of the cluster. Joining these observations, in this work we explore the possibility that the jet-ambient gas interaction leads to a filamentary morphology in the X-ray domain. We have found that simulation considering orbital motion offers the possibility to explain the diffuse emission observed in the X-ray domain. The circular orbital motion, additional to precession motion, contribute to disperse the shocked gas and the X-ray appearance of the 3D simulation reproduce some important details of Abel 1795 X-ray emission (Rodriguez-Martinez et al. 2006, A&A, 448, 15): A bright bow-shock at north (spot), where interact directly the jet and the ICM and which is observed in the X-ray image. Meanwhile, in the south side there is no bow-shock X-ray emission, but the wake appears as a X-ray source. This wake is part of the diffuse shocked ambient gas region.
NASA Astrophysics Data System (ADS)
Mihalas, Dimitri
Hydrodynamics Front Fitting Artificial Dissipation The Adaptive Grid The TITAN Code References
NASA Astrophysics Data System (ADS)
Kuroda, Takami; Takiwaki, Tomoya; Kotake, Kei
2016-02-01
We present a new multi-dimensional radiation-hydrodynamics code for massive stellar core-collapse in full general relativity (GR). Employing an M1 analytical closure scheme, we solve spectral neutrino transport of the radiation energy and momentum based on a truncated moment formalism. Regarding neutrino opacities, we take into account a baseline set in state-of-the-art simulations, in which inelastic neutrino-electron scattering, thermal neutrino production via pair annihilation, and nucleon-nucleon bremsstrahlung are included. While the Einstein field equations and the spatial advection terms in the radiation-hydrodynamics equations are evolved explicitly, the source terms due to neutrino-matter interactions and energy shift in the radiation moment equations are integrated implicitly by an iteration method. To verify our code, we first perform a series of standard radiation tests with analytical solutions that include the check of gravitational redshift and Doppler shift. A good agreement in these tests supports the reliability of the GR multi-energy neutrino transport scheme. We then conduct several test simulations of core-collapse, bounce, and shock stall of a 15{M}⊙ star in the Cartesian coordinates and make a detailed comparison with published results. Our code performs quite well to reproduce the results of full Boltzmann neutrino transport especially before bounce. In the postbounce phase, our code basically performs well, however, there are several differences that are most likely to come from the insufficient spatial resolution in our current 3D-GR models. For clarifying the resolution dependence and extending the code comparison in the late postbounce phase, we discuss that next-generation Exaflops class supercomputers are needed at least.
Evaluation of ALE processes for patterning
NASA Astrophysics Data System (ADS)
Papalia, J. M.; Marchack, N.; Bruce, R. L.; Miyazoe, H.; Engelmann, S. U.; Joseph, E. A.
2016-03-01
The need for continued device scaling along with the increasing demand for high precision have lead to the development of atomic layer etch processes in semiconductor manufacturing. We have tested this new methodology with regard to patterning applications. While these new plasma-enhanced atomic layer etch (PE-ALE) processes show encouraging results, most patterning applications are best realized by optimizations through discharge chemistry and/or plasma parameters. While PE-ALE approaches seem to have limited success for trilayer patterning applications, significant improvements were obtained when applying them to small pitch. In particular the increased selectivity to OPL seems to offer a potential benefit for patterning high aspect ratio features.
Modeling Heat Conduction and Radiation Transport with the Diffusion Equation in NIF ALE-AMR
Fisher, A C; Bailey, D S; Kaiser, T B; Gunney, B N; Masters, N D; Koniges, A E; Eder, D C; Anderson, R W
2009-10-06
The ALE-AMR code developed for NIF is a multi-material hydro-code that models target assembly fragmentation in the aftermath of a shot. The combination of ALE (Arbitrary Lagrangian Eulerian) hydro with AMR (Adaptive Mesh Refinement) allows the code to model a wide range of physical conditions and spatial scales. The large range of temperatures encountered in the NIF target chamber can lead to significant fluxes of energy due to thermal conduction and radiative transport. These physical effects can be modeled approximately with the aid of the diffusion equation. We present a novel method for the solution of the diffusion equation on a composite mesh in order to capture these physical effects.
Vidgren, Virve; Ruohonen, Laura; Londesborough, John
2005-01-01
Maltose and maltotriose are the major sugars in brewer's wort. Brewer's yeasts contain multiple genes for maltose transporters. It is not known which of these express functional transporters. We correlated maltose transport kinetics with the genotypes of some ale and lager yeasts. Maltose transport by two ale strains was strongly inhibited by other α-glucosides, suggesting the use of broad substrate specificity transporters, such as Agt1p. Maltose transport by three lager strains was weakly inhibited by other α-glucosides, suggesting the use of narrow substrate specificity transporters. Hybridization studies showed that all five strains contained complete MAL1, MAL2, MAL3, and MAL4 loci, except for one ale strain, which lacked a MAL2 locus. All five strains also contained both AGT1 (coding a broad specificity α-glucoside transporter) and MAL11 alleles. MPH genes (maltose permease homologues) were present in the lager but not in the ale strains. During growth on maltose, the lager strains expressed AGT1 at low levels and MALx1 genes at high levels, whereas the ale strains expressed AGT1 at high levels and MALx1 genes at low levels. MPHx expression was negligible in all strains. The AGT1 sequences from the ale strains encoded full-length (616 amino acid) polypeptides, but those from both sequenced lager strains encoded truncated (394 amino acid) polypeptides that are unlikely to be functional transporters. Thus, despite the apparently similar genotypes of these ale and lager strains revealed by hybridization, maltose is predominantly carried by AGT1-encoded transporters in the ale strains and by MALx1-encoded transporters in the lager strains. PMID:16332759
Simulation of underwater explosion benchmark experiments with ALE3D
Couch, R.; Faux, D.
1997-05-19
Some code improvements have been made during the course of this study. One immediately obvious need was for more flexibility in the constitutive representation for materials in shell elements. To remedy this situation, a model with a tabular representation of stress versus strain and rate dependent effects was implemented. This was required in order to obtain reasonable results in the IED cylinder simulation. Another deficiency was in the ability to extract and plot variables associated with shell elements. The pipe whip analysis required the development of a scheme to tally and plot time dependent shell quantities such as stresses and strains. This capability had previously existed only for solid elements. Work was initiated to provide the same range of plotting capability for structural elements that exist with the DYNA3D/TAURUS tools. One of the characteristics of these problems is the disparity in zoning required in the vicinity of the charge and bubble compared to that needed in the far field. This disparity can cause the equipotential relaxation logic to provide a less than optimal solution. Various approaches were utilized to bias the relaxation to obtain more optimal meshing during relaxation. Extensions of these techniques have been developed to provide more powerful options, but more work still needs to be done. The results presented here are representative of what can be produced with an ALE code structured like ALE3D. They are not necessarily the best results that could have been obtained. More experience in assessing sensitivities to meshing and boundary conditions would be very useful. A number of code deficiencies discovered in the course of this work have been corrected and are available for any future investigations.
Hayes, J C; Norman, M
1999-10-28
This report details an investigation into the efficacy of two approaches to solving the radiation diffusion equation within a radiation hydrodynamic simulation. Because leading-edge scientific computing platforms have evolved from large single-node vector processors to parallel aggregates containing tens to thousands of individual CPU's, the ability of an algorithm to maintain high compute efficiency when distributed over a large array of nodes is critically important. The viability of an algorithm thus hinges upon the tripartite question of numerical accuracy, total time to solution, and parallel efficiency.
NASA Technical Reports Server (NTRS)
Jackson, Karen E.; Fuchs, Yvonne T.
2008-01-01
Simulation of multi-terrain impact has been identified as an important research area for improved prediction of rotorcraft crashworthiness within the NASA Subsonic Rotary Wing Aeronautics Program on Rotorcraft Crashworthiness. As part of this effort, two vertical drop tests were conducted of a 5-ft-diameter composite fuselage section into water. For the first test, the fuselage section was impacted in a baseline configuration without energy absorbers. For the second test, the fuselage section was retrofitted with a composite honeycomb energy absorber. Both tests were conducted at a nominal velocity of 25-ft/s. A detailed finite element model was developed to represent each test article and water impact was simulated using both Arbitrary Lagrangian Eulerian (ALE) and Smooth Particle Hydrodynamics (SPH) approaches in LS-DYNA, a nonlinear, explicit transient dynamic finite element code. Analytical predictions were correlated with experimental data for both test configurations. In addition, studies were performed to evaluate the influence of mesh density on test-analysis correlation.
NASA Astrophysics Data System (ADS)
Radice, D.; Rezzolla, L.
2012-11-01
We present THC: a new high-order flux-vector-splitting code for Newtonian and special-relativistic hydrodynamics designed for direct numerical simulations of turbulent flows. Our code implements a variety of different reconstruction algorithms, such as the popular weighted essentially non oscillatory and monotonicity-preserving schemes, or the more specialised bandwidth-optimised WENO scheme that has been specifically designed for the study of compressible turbulence. We show the first systematic comparison of these schemes in Newtonian physics as well as for special-relativistic flows. In particular we will present the results obtained in simulations of grid-aligned and oblique shock waves and nonlinear, large-amplitude, smooth adiabatic waves. We will also discuss the results obtained in classical benchmarks such as the double-Mach shock reflection test in Newtonian physics or the linear and nonlinear development of the relativistic Kelvin-Helmholtz instability in two and three dimensions. Finally, we study the turbulent flow induced by the Kelvin-Helmholtz instability and we show that our code is able to obtain well-converged velocity spectra, from which we benchmark the effective resolution of the different schemes.
McKay, M.W.
1982-06-01
STEALTH is a family of computer codes that solve the equations of motion for a general continuum. These codes can be used to calculate a variety of physical processes in which the dynamic behavior of a continuum is involved. The versions of STEALTH described in this volume were designed for the calculation of problems involving low-speed fluid flow. They employ an implicit finite difference technique to solve the one- and two-dimensional equations of motion, written for an arbitrary coordinate system, for both incompressible and compressible fluids. The solution technique involves an iterative solution of the implicit, Lagrangian finite difference equations. Convection terms that result from the use of an arbitrarily-moving coordinate system are calculated separately. This volume provides the theoretical background, the finite difference equations, and the input instructions for the one- and two-dimensional codes; a discussion of several sample problems; and a listing of the input decks required to run those problems.
Passy, Jean-Claude; Mac Low, Mordecai-Mark; De Marco, Orsola; Fryer, Chris L.; Diehl, Steven; Rockefeller, Gabriel; Herwig, Falk; Oishi, Jeffrey S.; Bryan, Greg L.
2012-01-01
We use three-dimensional hydrodynamical simulations to study the rapid infall phase of the common envelope (CE) interaction of a red giant branch star of mass equal to 0.88 M{sub Sun} and a companion star of mass ranging from 0.9 down to 0.1 M{sub Sun }. We first compare the results obtained using two different numerical techniques with different resolutions, and find very good agreement overall. We then compare the outcomes of those simulations with observed systems thought to have gone through a CE. The simulations fail to reproduce those systems in the sense that most of the envelope of the donor remains bound at the end of the simulations and the final orbital separations between the donor's remnant and the companion, ranging from 26.8 down to 5.9 R{sub Sun }, are larger than the ones observed. We suggest that this discrepancy vouches for recombination playing an essential role in the ejection of the envelope and/or significant shrinkage of the orbit happening in the subsequent phase.
NASA Astrophysics Data System (ADS)
Delettrez, J. A.; Myatt, J. F.; Yaakobi, B.
2015-11-01
The modeling of the fast-electron transport in the 1-D hydrodynamic code LILAC was modified because of the addition of cross-beam-energy-transfer (CBET) in implosion simulations. Using the old fast-electron with source model CBET results in a shift of the peak of the hard x-ray (HXR) production from the end of the laser pulse, as observed in experiments, to earlier in the pulse. This is caused by a drop in the laser intensity of the quarter-critical surface from CBET interaction at lower densities. Data from simulations with the laser plasma simulation environment (LPSE) code will be used to modify the source algorithm in LILAC. In addition, the transport model in LILAC has been modified to include deviations from the straight-line algorithm and non-specular reflection at the sheath to take into account the scattering from collisions and magnetic fields in the corona. Simulation results will be compared with HXR emissions from both room-temperature plastic and cryogenic target experiments. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.
Algebraic Flux Correction and Geometric Conservation in ALE Computations
NASA Astrophysics Data System (ADS)
Scovazzi, Guglielmo; López Ortega, Alejandro
In this chapter, we describe the important role played by the so-called Geometric Conservation Law (GCL) in the design of Flux-Corrected Transport (FCT) methods for Arbitrary Lagrangian-Eulerian (ALE) applications. We propose a conservative synchronized remap algorithm applicable to arbitrary Lagrangian-Eulerian computations with nodal finite elements. Unique to the proposed method is the direct incorporation of the geometric conservation law (GCL) in the resulting numerical scheme. We show how the geometric conservation law allows the proposed method to inherit the positivity preserving and local extrema diminishing (LED) properties typical of FCT schemes for pure transport problems. The extension to systems of equations which typically arise in meteorological and compressible flow computations is performed by means of a synchronized strategy. The proposed approach also complements and extends the work of the first author on nodal-based methods for shock hydrodynamics, delivering a fully integrated suite of Lagrangian/remap algorithms for computations of compressible materials under extreme load conditions. Numerical tests in multiple dimensions show that the method is robust and accurate in typical computational scenarios.
Knap, J; McClelland, M A; Maienschein, J L; Howard, W M; Nichols, A L; deHaven, M R; Strand, O T
2006-06-22
We describe the results of a Scaled-Thermal-Explosion-eXperiment (STEX) for LX-10 (94.7 % HMX, 5.3 % Viton A) confined in an AerMet 100 (iron-cobalt-nickel alloy) tube with reinforced end caps. The experimental measurements are compared with predictions of an Arbitrary-Lagrangian-Eulerian (ALE3D) computer model. ALE3D is a three-dimensional multi-physics computer code capable of solving coupled equations describing thermal, mechanical and chemical behavior of materials. In particular, we focus on the processes linked to fracture and fragmentation of the AerMet tube driven by the LX-10 deflagration.
NASA Astrophysics Data System (ADS)
Müller, Bernhard; Janka, Hans-Thomas
2014-06-01
Considering six general relativistic, two-dimensional (2D) supernova (SN) explosion models of progenitor stars between 8.1 and 27 M ⊙, we systematically analyze the properties of the neutrino emission from core collapse and bounce to the post-explosion phase. The models were computed with the VERTEX-COCONUT code, using three-flavor, energy-dependent neutrino transport in the ray-by-ray-plus approximation. Our results confirm the close similarity of the mean energies, langErang, of \\bar{\
NASA Astrophysics Data System (ADS)
Müller, Bernhard; Janka, Hans-Thomas; Marek, Andreas
2012-09-01
We present the first two-dimensional general relativistic (GR) simulations of stellar core collapse and explosion with the COCONUT hydrodynamics code in combination with the VERTEX solver for energy-dependent, three-flavor neutrino transport, using the extended conformal flatness condition for approximating the space-time metric and a ray-by-ray-plus ansatz to tackle the multi-dimensionality of the transport. For both of the investigated 11.2 and 15 M ⊙ progenitors we obtain successful, though seemingly marginal, neutrino-driven supernova explosions. This outcome and the time evolution of the models basically agree with results previously obtained with the PROMETHEUS hydro solver including an approximative treatment of relativistic effects by a modified Newtonian potential. However, GR models exhibit subtle differences in the neutrinospheric conditions compared with Newtonian and pseudo-Newtonian simulations. These differences lead to significantly higher luminosities and mean energies of the radiated electron neutrinos and antineutrinos and therefore to larger energy-deposition rates and heating efficiencies in the gain layer with favorable consequences for strong nonradial mass motions and ultimately for an explosion. Moreover, energy transfer to the stellar medium around the neutrinospheres through nucleon recoil in scattering reactions of heavy-lepton neutrinos also enhances the mentioned effects. Together with previous pseudo-Newtonian models, the presented relativistic calculations suggest that the treatment of gravity and energy-exchanging neutrino interactions can make differences of even 50%-100% in some quantities and is likely to contribute to a finally successful explosion mechanism on no minor level than hydrodynamical differences between different dimensions.
Mueller, Bernhard; Janka, Hans-Thomas; Marek, Andreas E-mail: thj@mpa-garching.mpg.de
2012-09-01
We present the first two-dimensional general relativistic (GR) simulations of stellar core collapse and explosion with the COCONUT hydrodynamics code in combination with the VERTEX solver for energy-dependent, three-flavor neutrino transport, using the extended conformal flatness condition for approximating the space-time metric and a ray-by-ray-plus ansatz to tackle the multi-dimensionality of the transport. For both of the investigated 11.2 and 15 M{sub Sun} progenitors we obtain successful, though seemingly marginal, neutrino-driven supernova explosions. This outcome and the time evolution of the models basically agree with results previously obtained with the PROMETHEUS hydro solver including an approximative treatment of relativistic effects by a modified Newtonian potential. However, GR models exhibit subtle differences in the neutrinospheric conditions compared with Newtonian and pseudo-Newtonian simulations. These differences lead to significantly higher luminosities and mean energies of the radiated electron neutrinos and antineutrinos and therefore to larger energy-deposition rates and heating efficiencies in the gain layer with favorable consequences for strong nonradial mass motions and ultimately for an explosion. Moreover, energy transfer to the stellar medium around the neutrinospheres through nucleon recoil in scattering reactions of heavy-lepton neutrinos also enhances the mentioned effects. Together with previous pseudo-Newtonian models, the presented relativistic calculations suggest that the treatment of gravity and energy-exchanging neutrino interactions can make differences of even 50%-100% in some quantities and is likely to contribute to a finally successful explosion mechanism on no minor level than hydrodynamical differences between different dimensions.
Magmatic degassing at Erta 'Ale volcano, Ethiopia
NASA Astrophysics Data System (ADS)
Sawyer, G. M.; Oppenheimer, C.; Tsanev, V. I.; Yirgu, G.
2008-12-01
Here we report measurements of the chemical composition and flux of gas emitted from the central lava lake at Erta 'Ale volcano (Ethiopia) made on 15 October 2005. We determined an average SO 2 flux of ˜ 0.69 ± 0.17 kg s - 1 using zenith sky ultraviolet spectroscopy of the plume, and molar proportions of magmatic H 2O, CO 2, SO 2, CO, HCl and HF gases to be 93.58, 3.66, 2.47, 0.06, 0.19 and 0.04%, respectively, by open-path Fourier transform infrared (FTIR) spectrometry. Together, these data imply fluxes of 7.3, 0.7, 0.008, 0.03 and 0.004 kg s - 1 for H 2O, CO 2, CO, HCl and HF, respectively. These are the first FTIR spectroscopic observations at Erta 'Ale, and are also some of the very few gas measurements made at the volcano since the early 1970s (Gerlach, T.M., 1980b. Investigation of volcanic gas analyses and magma outgassing from Erta 'Ale lava lake, Afar, Ethiopia. Journal of Volcanology and Geothermal Research, 7(3-4): 415-441). We identify significant increases in the proportion of H 2O in the plume with respect to both CO 2 and SO 2 across this 30-year interval, which we attribute to the depletion of volatiles in magma that sourced effusive eruptions during the early 1970s and/or to fractional magma degassing between the two active pit craters located in the summit caldera.
Cookoff Response of PBXN-109: Material Characterization and ALE3D Thermal Predictions
McClelland, M A; Tran, T D; Cunningham, B J; Weese, R K; Maienschein, J L
2001-05-29
Materials properties measurements are made for the RDX-based explosive, PBXN-109, and initial ALE3D model predictions are given for the cookoff temperature in a U.S. Navy test. This work is part of an effort in the U.S. Navy and Department of Energy (DOE) laboratories to understand the thermal explosion behavior of this material. Benchmark cookoff experiments are being performed by the U.S. Navy to validate DOE materials models and computer codes. The ALE3D computer code can model the coupled thermal, mechanical, and chemical behavior of heating, ignition, and explosion in cookoff tests. In our application, a standard three-step step model is selected for the chemical kinetics. The strength behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the Equation Of State (EOS) for the solid and gas species, respectively. Materials characterization measurements are given for thermal expansion, heat capacity, shear modulus, bulk modulus, and One-Dimensional-Time-to-Explosion (ODTX). These measurements and those of the other project participants are used to determine parameters in the ALE3D chemical, mechanical, and thermal models. Time-dependent, two-dimensional results are given for the temperature and material expansion. The results show predicted cookoff temperatures slightly higher than the measured values.
Cookoff Response of PBXN-109: Material Characterization and ALE3D Thermal Predictions
McClelland, M A; Tran, T D; Cunningham, B J; Weese, R K; Maienschein, J L
2001-08-21
Materials properties measurements are made for the RDX-based explosive, PBXN-109, and initial ALE3D model predictions are given for the cookoff temperature in a U.S. Navy test. This work is part of an effort in the U.S. Navy and Department of Energy (DOE) laboratories to understand the thermal explosion behavior of this material. Benchmark cookoff experiments are being performed by the U.S. Navy to validate DOE materials models and computer codes. The ALE3D computer code can model the coupled thermal, mechanical, and chemical behavior of heating, ignition, and explosion in cookoff tests. In our application, a standard three-step step model is selected for the chemical kinetics. The strength behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the Equation Of State (EOS) for the solid and gas species, respectively. Materials characterization measurements are given for thermal expansion, heat capacity, shear modulus, bulk modulus, and One-Dimensional-Time-to-Explosion (ODTX). These measurements and those of the other project participants are used to determine parameters in the ALE3D chemical, mechanical, and thermal models. Time-dependent, two-dimensional results are given for the temperature and material expansion. The results show predicted cookoff temperatures slightly higher than the measured values.
Modeling Explosive/Rock Interaction During Presplitting Using ALE Computational Methods
Jensen, Richard P.; Preece, Dale S.
1999-04-27
Arbitrary Lagrangian Eulerian (ALE) computational techniques allow treatment of gases, liq- uids, and solids in the same simulation. ALE methods include the ability to treat shockwaves in gases, liquids, and solids and the interaction of shockwaves with each other and with media from one of the other categories. ALE codes can also treat explosive detonation and the expansion of the explosive gases and their interaction with air and solids. ALEGRA is a 3-DALE code that has been developed at Sandia National Laboratories over the past few years. ALEGRA has been applied to a 2-D simulation of presplitting using decoupled explosives in rock blasting with very interesting results. The detonation of the explosive at the bottom of the hole sends a shock wave up the borehole driven by the explosive gas expanding into air. The explosive gas compresses the air against the stemming column where it rebounds and recompresses at the bottom of the borehole. This type of ringing takes several cycles to damp out. The explosively induced expansion of the borehole is also treated by ALEGRA as well as the shock wave imparted to the rock. The presentation of this paper will include sev- eral computer animations to aid in understanding this complex phenomenon.
Müller, Bernhard; Janka, Hans-Thomas E-mail: bjmuellr@mpa-garching.mpg.de
2014-06-10
Considering six general relativistic, two-dimensional (2D) supernova (SN) explosion models of progenitor stars between 8.1 and 27 M {sub ☉}, we systematically analyze the properties of the neutrino emission from core collapse and bounce to the post-explosion phase. The models were computed with the VERTEX-COCONUT code, using three-flavor, energy-dependent neutrino transport in the ray-by-ray-plus approximation. Our results confirm the close similarity of the mean energies, (E), of ν-bar {sub e} and heavy-lepton neutrinos and even their crossing during the accretion phase for stars with M ≳ 10 M {sub ☉} as observed in previous 1D and 2D simulations with state-of-the-art neutrino transport. We establish a roughly linear scaling of 〈E{sub ν-bar{sub e}}〉 with the proto-neutron star (PNS) mass, which holds in time as well as for different progenitors. Convection inside the PNS affects the neutrino emission on the 10%-20% level, and accretion continuing beyond the onset of the explosion prevents the abrupt drop of the neutrino luminosities seen in artificially exploded 1D models. We demonstrate that a wavelet-based time-frequency analysis of SN neutrino signals in IceCube will offer sensitive diagnostics for the SN core dynamics up to at least ∼10 kpc distance. Strong, narrow-band signal modulations indicate quasi-periodic shock sloshing motions due to the standing accretion shock instability (SASI), and the frequency evolution of such 'SASI neutrino chirps' reveals shock expansion or contraction. The onset of the explosion is accompanied by a shift of the modulation frequency below 40-50 Hz, and post-explosion, episodic accretion downflows will be signaled by activity intervals stretching over an extended frequency range in the wavelet spectrogram.
SALE: a simplified ALE computer program for fluid flow at all speeds
Amsden, A.A.; Ruppel, H.M.; Hirt, C.W.
1980-06-01
A simplified numerical fluid-dynamics computing technique is presented for calculating two-dimensional fluid flows at all speeds. It combines an implicit treatment of the pressure equation similar to that in the Implicit Continuous-fluid Eulerian (ICE) technique with the grid rezoning philosophy of the Arbitrary Lagrangian-Eulerian (ALE) method. As a result, it can handle flow speeds from supersonic to the incompressible limit in a grid that may be moved with the fluid in typical Lagrangian fashion, or held fixed in an Eulerian manner, or moved in some arbitrary way to give a continuous rezoning capability. The report describes the combined (ICEd-ALE) technique in the framework of the SALE (Simplified ALE) computer program, for which a general flow diagram and complete FORTRAN listing are included. A set of sample problems show how to use or modify the basic code for a variety of applications. Numerical listings are provided for a sample problem run with the SALE program.
ALE3D Model Predictions and Materials Characterization for the Cookoff Response of PBXN-109
McClelland, M A; Maienschein, J L; Nichols, A L; Wardell, J F; Atwood, A I; Curran, P O
2002-03-19
ALE3D simulations are presented for the thermal explosion of PBXN-109 (RDX, AI, HTPB, DOA) in support of an effort by the U. S. Navy and Department of Energy (DOE) to validate computational models. The U.S. Navy is performing benchmark tests for the slow cookoff of PBXN-109 in a sealed tube. Candidate models are being tested using the ALE3D code, which can simulate the coupled thermal, mechanical, and chemical behavior during heating, ignition, and explosion. The strength behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the Equation Of State (EOS) for the solid and gas species, respectively. A void model is employed to represent the air in gaps. ALE3D model 'parameters are specified using measurements of thermal and mechanical properties including thermal expansion, heat capacity, shear modulus, and bulk modulus. A standard three-step chemical kinetics model is used during the thermal ramp, and a pressure-dependent burn front model is employed during the rapid expansion. Parameters for the three-step kinetics model are specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate of pristine and thermally damaged material are employed to determine parameters in the burn front model. Results are given for calculations in which heating, ignition, and explosion are modeled in a single simulation. We compare model results to measurements for the cookoff temperature and tube wall strain.
NASA Astrophysics Data System (ADS)
Sijoy, C. D.; Chaturvedi, S.
2015-05-01
Three-temperature (3T), unstructured-mesh, non-equilibrium radiation hydrodynamics (RHD) code have been developed for the simulation of intense thermal radiation or high-power laser driven radiative shock hydrodynamics in two-dimensional (2D) axis-symmetric geometries. The governing hydrodynamics equations are solved using a compatible unstructured Lagrangian method based on a control volume differencing (CVD) scheme. A second-order predictor-corrector (PC) integration scheme is used for the temporal discretization of the hydrodynamics equations. For the radiation energy transport, frequency averaged gray model is used in which the flux-limited diffusion (FLD) approximation is used to recover the free-streaming limit of the radiation propagation in optically thin regions. The proposed RHD model allows to have different temperatures for the electrons and ions. In addition to this, the electron and thermal radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. For this, the coupled flux limited electron heat conduction and the non-equilibrium radiation diffusion equations are solved simultaneously by using an implicit, axis-symmetric, cell-centered, monotonic, nonlinear finite volume (NLFV) scheme. In this paper, we have described the details of the 2D, 3T, non-equilibrium RHD code developed along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We have also conducted a performance analysis with different linearity preserving interpolation schemes that are used for the evaluation of the nodal values in the NLFV scheme. Finally, in order to demonstrate full capability of the code implementation, we have presented the simulation of laser driven thin Aluminum (Al) foil acceleration. The simulation results are found to be in good agreement
Fisher, A. C.; Bailey, D. S.; Kaiser, T. B.; Eder, D. C.; Gunney, B. T. N.; Masters, N. D.; Koniges, A. E.; Anderson, R. W.
2015-02-01
Here, we present a novel method for the solution of the diffusion equation on a composite AMR mesh. This approach is suitable for including diffusion based physics modules to hydrocodes that support ALE and AMR capabilities. To illustrate, we proffer our implementations of diffusion based radiation transport and heat conduction in a hydrocode called ALE-AMR. Numerical experiments conducted with the diffusion solver and associated physics packages yield 2nd order convergence in the L_{2} norm.
Weeratunga, S K
2008-11-06
Ares and Kull are mature code frameworks that support ALE hydrodynamics for a variety of HEDP applications at LLNL, using two widely different meshing approaches. While Ares is based on a 2-D/3-D block-structured mesh data base, Kull is designed to support unstructured, arbitrary polygonal/polyhedral meshes. In addition, both frameworks are capable of running applications on large, distributed-memory parallel machines. Currently, both these frameworks separately support assorted collections of physics packages related to HEDP, including one for the energy deposition by laser/ion-beam ray tracing. This study analyzes the options available for developing a common laser/ion-beam ray tracing package that can be easily shared between these two code frameworks and concludes with a set of recommendations for its development.
ERIC Educational Resources Information Center
Lafrance, Pierre
1978-01-01
Explores in a non-mathematical treatment some of the hydrodynamical phenomena and forces that affect the operation of ships, especially at high speeds. Discusses the major components of ship resistance such as the different types of drags and ways to reduce them and how to apply those principles for the hovercraft. (GA)
Castor, J I
2003-10-16
The discipline of radiation hydrodynamics is the branch of hydrodynamics in which the moving fluid absorbs and emits electromagnetic radiation, and in so doing modifies its dynamical behavior. That is, the net gain or loss of energy by parcels of the fluid material through absorption or emission of radiation are sufficient to change the pressure of the material, and therefore change its motion; alternatively, the net momentum exchange between radiation and matter may alter the motion of the matter directly. Ignoring the radiation contributions to energy and momentum will give a wrong prediction of the hydrodynamic motion when the correct description is radiation hydrodynamics. Of course, there are circumstances when a large quantity of radiation is present, yet can be ignored without causing the model to be in error. This happens when radiation from an exterior source streams through the problem, but the latter is so transparent that the energy and momentum coupling is negligible. Everything we say about radiation hydrodynamics applies equally well to neutrinos and photons (apart from the Einstein relations, specific to bosons), but in almost every area of astrophysics neutrino hydrodynamics is ignored, simply because the systems are exceedingly transparent to neutrinos, even though the energy flux in neutrinos may be substantial. Another place where we can do ''radiation hydrodynamics'' without using any sophisticated theory is deep within stars or other bodies, where the material is so opaque to the radiation that the mean free path of photons is entirely negligible compared with the size of the system, the distance over which any fluid quantity varies, and so on. In this case we can suppose that the radiation is in equilibrium with the matter locally, and its energy, pressure and momentum can be lumped in with those of the rest of the fluid. That is, it is no more necessary to distinguish photons from atoms, nuclei and electrons, than it is to distinguish
NASA Astrophysics Data System (ADS)
Lauga, Eric
2016-01-01
Bacteria predate plants and animals by billions of years. Today, they are the world's smallest cells, yet they represent the bulk of the world's biomass and the main reservoir of nutrients for higher organisms. Most bacteria can move on their own, and the majority of motile bacteria are able to swim in viscous fluids using slender helical appendages called flagella. Low-Reynolds number hydrodynamics is at the heart of the ability of flagella to generate propulsion at the micrometer scale. In fact, fluid dynamic forces impact many aspects of bacteriology, ranging from the ability of cells to reorient and search their surroundings to their interactions within mechanically and chemically complex environments. Using hydrodynamics as an organizing framework, I review the biomechanics of bacterial motility and look ahead to future challenges.
ALE3D Model Predictions and Experimental Analysis of the Cookoff Response of Comp B*
Maienschein, J L; McClelland, M A; Wardell, J F; Reaugh, J E; Nichols, A L; Tran, T D
2003-11-24
ALE3D simulations are presented for the thermal explosion of Comp B (RDX,TNT) in a Scaled Thermal Explosion Experiment (STEX). Candidate models and numerical strategies are being tested using the ALE3D code which simulates the coupled thermal, mechanical, and chemical behavior during heating, ignition, and explosion. The mechanical behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the equation of state of the solid and gas species, respectively. A gamma-law model is employed for the air in gaps, and a mixed material model is used for the interface between air and explosive. A three-step chemical kinetics model is used for each of the RDX and TNT reaction sequences during the heating and ignition phases, and a pressure-dependent deflagration model is employed during the rapid expansion. Parameters for the three-step kinetics model are specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate are employed to determine parameters in the burn front model. We compare model predictions to measurements for temperature fields, ignition temperature, and tube wall strain during the heating, ignition, and explosive phases.
Fritz, Brad G.; Dirkes, Roger L.; Napier, Bruce A.
2007-04-01
The Hanford Reach National Monument consists of several units, one of which is the Fitzner/Eberhardt Arid Lands Ecology Reserve (ALE) Unit. This unit is approximately 311 km2 of shrub-steppe habitat located to the south and west of Highway 240. To fulfill internal U. S. Department of Energy (DOE) requirements prior to any radiological clearance of land, DOE must evaluate the potential for residual radioactive contamination on this land and determine compliance with the requirements of DOE Order 5400.5. Historical soil monitoring conducted on ALE indicated soil concentrations of radionuclides were well below the Authorized Limits. However, the historical sampling was done at a limited number of sampling locations. Therefore, additional soil sampling was conducted to determine if the concentrations of radionuclides in soil on the ALE Unit were below the Authorized Limits. This report contains the results of 50 additional soil samples. The 50 soil samples collected from the ALE Unit all had concentrations of radionuclides far below the Authorized Limits. The average concentrations for all detectable radionuclides were less than the estimated Hanford Site background. Furthermore, the maximum observed soil concentrations for the radionuclides included in the Authorized Limits would result in a potential annual dose of 0.14 mrem assuming the most probable use scenario, a recreational visitor. This potential dose is well below the DOE 100-mrem per year dose limit for a member of the public. Spatial analysis of the results indicated no observable statistically significant differences between radionuclide concentrations across the ALE Unit. Furthermore, the results of the biota dose assessment screen, which used the ResRad Biota code, indicated that the concentrations of radionuclides in ALE Unit soil pose no significant health risk to biota.
A Wavelet Based Dissipation Method for ALE Schemes
Cabot, B; Eliason, D.; Jameson, L.
2000-07-01
Wavelet analysis is natural tool to detect the presence of numerical noise, shocks and other features which might drive a calculation to become unstable. Here we suggest ways where wavelets can be used effectively to define a dissipation flag to replace dissipation flags traditionally used in ALE numerical schemes.
Second order multidimensional sign-preserving remapping for ALE methods
Hill, Ryan N; Szmelter, J.
2010-12-15
A second-order conservative sign-preserving remapping scheme for Arbitrary Lagrangian-Eulerian (ALE) methods is developed utilising concepts of the Multidimensional Positive Definite Advection Transport Algorithm (MPDATA). The algorithm is inherently multidimensional, and so does not introduce splitting errors. The remapping is implemented in a two-dimensional, finite element ALE solver employing staggered quadrilateral meshes. The MPDATA remapping uses a finite volume discretization developed for volume coordinates. It is applied for the remapping of density and internal energy arranged as cell centered, and velocity as nodal, dependent variables. In the paper, the advection of scalar fields is examined first for test cases with prescribed mesh movement. A direct comparison of MPDATA with the performance of the van Leer MUSCL scheme indicates advantages of a multidimensional approach. Furthermore, distinctly different performance between basic MPDATA and the infinite gauge option is illustrated using benchmarks involving transport of a sign changing velocity field. Further development extends the application of MPDATA remapping to the full ALE solver with a staggered mesh arrangement for density, internal energy and momentum using volume coordinates. At present, two options of the algorithm - basic and infinite gauge - are implemented. To ensure a meaningful assessment, an identical Lagrangian solver and computational mesh update routines are used with either MPDATA or van Leer MUSCL remapping. The evaluation places particular focus on the abilities of both schemes to accurately model multidimensional problems. Theoretical considerations are supported with numerical examples. In addition to the prescribed mesh movement cases for advection of scalars, the demonstrations include two-dimensional Eulerian and ALE flow simulations on quadrilateral meshes with both fixed and variable timestep control. The key comparisons include the standard test cases of Sod and Noh
Margraf, J
2012-06-12
This report primarily concerns the use of two massively parallel finite element codes originally written and maintained at Lawrence Livermore National Laboratory. ALE3D is an explicit hydrodynamics code commonly employed to simulate wave propagation from high energy scenarios and the resulting interaction with nearby structures. This coupled response ensures that a structure is accurately applied with a blast loading varying both in space and time. Figure 1 illustrates the radial outward propagation of a pressure wave due to a center detonated spherical explosive originating from the lower left. The radial symmetry seen in this scenario is lost when instead a cylindrocal charge is detonated. Figure 2 indicates that a stronger, faster traveling pressure wave occurs in the direction of the normal axis to the cylinder. The ALE3D name is derived because of the use of arbitrary-Lagrange-Eulerian elements in which the mesh is allowed to advect; a process through which the mesh is modified to alleviate tanlging and general mesh distortion often cuased by high energy scenarios. The counterpart to an advecting element is a Lagrange element, whose mesh moves with the material. Ideally all structural components are kept Lagrange as long as possible to preserve accuracy of material variables and minimize advection related errors. Advection leads to mixed zoning, so using structural Lagrange elements also improves the visualization when post processing the results. A simplified representation of the advection process is shown in Figure 3. First the mesh is distorted due to material motion during the Lagrange step. The mesh is then shifted to an idealized and less distorted state to prevent irregular zones caused by the Lagrange motion. Lastly, the state variables are remapped to the elements of the newly constructed mesh. Note that Figure 3 represents a purely Eulerian mesh relaxation because the mesh is relocated back to the pre-Lagrange position. This is the case when the
AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource.
Scarpato, Margherita; Esposito, Roberta; Evangelista, Daniela; Aprile, Marianna; Ambrosio, Maria Rosaria; Angelini, Claudia; Ciccodicola, Alfredo; Costa, Valerio
2014-01-01
Transcriptome studies have shown the pervasive nature of transcription, demonstrating almost all the genes undergo alternative splicing. Accurately annotating all transcripts of a gene is crucial. It is needed to understand the impact of mutations on phenotypes, to shed light on genetic and epigenetic regulation of mRNAs and more generally to widen our knowledge about cell functionality and tissue diversity. RNA-sequencing (RNA-Seq), and the other applications of the next-generation sequencing, provides precious data to improve annotations' accuracy, simultaneously creating issues related to the variety, complexity and the size of produced data. In this 'scenario', the lack of user-friendly resources, easily accessible to researchers with low skills in bioinformatics, makes difficult to retrieve complete information about one or few genes without browsing a jungle of databases. Concordantly, the increasing amount of data from 'omics' technologies imposes to develop integrated databases merging different data formats coming from distinct but complementary sources. In light of these considerations, and given the wide interest in studying Down syndrome-a genetic condition due to the trisomy of human chromosome 21 (HSA21)-we developed an integrated relational database and a web interface, named ALE-HSA21 (AnaLysis of Expression on HSA21), accessible at http://bioinfo.na.iac.cnr.it/ALE-HSA21. This comprehensive and user-friendly web resource integrates-for all coding and noncoding transcripts of chromosome 21-existing gene annotations and transcripts identified de novo through RNA-Seq analysis with predictive computational analysis of regulatory sequences. Given the role of noncoding RNAs and untranslated regions of coding genes in key regulatory mechanisms, ALE-HSA21 is also an interesting web-based platform to investigate such processes. The 'transcript-centric' and easily-accessible nature of ALE-HSA21 makes this resource a valuable tool to rapidly retrieve data at
AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource
Scarpato, Margherita; Esposito, Roberta; Evangelista, Daniela; Aprile, Marianna; Ambrosio, Maria Rosaria; Angelini, Claudia; Ciccodicola, Alfredo; Costa, Valerio
2014-01-01
Transcriptome studies have shown the pervasive nature of transcription, demonstrating almost all the genes undergo alternative splicing. Accurately annotating all transcripts of a gene is crucial. It is needed to understand the impact of mutations on phenotypes, to shed light on genetic and epigenetic regulation of mRNAs and more generally to widen our knowledge about cell functionality and tissue diversity. RNA-sequencing (RNA-Seq), and the other applications of the next-generation sequencing, provides precious data to improve annotations' accuracy, simultaneously creating issues related to the variety, complexity and the size of produced data. In this ‘scenario’, the lack of user-friendly resources, easily accessible to researchers with low skills in bioinformatics, makes difficult to retrieve complete information about one or few genes without browsing a jungle of databases. Concordantly, the increasing amount of data from ‘omics’ technologies imposes to develop integrated databases merging different data formats coming from distinct but complementary sources. In light of these considerations, and given the wide interest in studying Down syndrome—a genetic condition due to the trisomy of human chromosome 21 (HSA21)—we developed an integrated relational database and a web interface, named ALE-HSA21 (AnaLysis of Expression on HSA21), accessible at http://bioinfo.na.iac.cnr.it/ALE-HSA21. This comprehensive and user-friendly web resource integrates—for all coding and noncoding transcripts of chromosome 21—existing gene annotations and transcripts identified de novo through RNA-Seq analysis with predictive computational analysis of regulatory sequences. Given the role of noncoding RNAs and untranslated regions of coding genes in key regulatory mechanisms, ALE-HSA21 is also an interesting web-based platform to investigate such processes. The ‘transcript-centric’ and easily-accessible nature of ALE-HSA21 makes this resource a valuable tool to
Mesh size and code option effects of strength calculations
Kaul, Ann M
2010-12-10
Modern Lagrangian hydrodynamics codes include numerical methods which allow calculations to proceed past the point obtainable by a purely Lagrangian scheme. These options can be employed as the user deems necessary to 'complete' a calculation. While one could argue that any calculation is better than none, to truly understand the calculated results and their relationship to physical reality, the user needs to understand how their runtime choices affect the calculated results. One step toward this goal is to understand the effect of each runtime choice on particular pieces of the code physics. This paper will present simulation results for some experiments typically used for strength model validation. Topics to be covered include effect of mesh size, use of various ALE schemes for mesh detangling, and use of anti-hour-glassing schemes. Experiments to be modeled include the lower strain rate ({approx} 10{sup 4} s{sup -1}) gas gun driven Taylor impact experiments and the higher strain rate ({approx} 10{sup 5}-10{sup 6} s{sup -1}) HE products driven perturbed plate experiments. The necessary mesh resolution and the effect of the code runtime options are highly dependent on the amount of localization of strain and stress in each experiment. In turn, this localization is dependent on the geometry of the experimental setup and the drive conditions.
Chabchoub, A; Hoffmann, N; Onorato, M; Genty, G; Dudley, J M; Akhmediev, N
2013-08-01
We report the experimental observation of multi-bound-soliton solutions of the nonlinear Schrödinger equation (NLS) in the context of hydrodynamic surface gravity waves. Higher-order N-soliton solutions with N=2, 3 are studied in detail and shown to be associated with self-focusing in the wave group dynamics and the generation of a steep localized carrier wave underneath the group envelope. We also show that for larger input soliton numbers, the wave group experiences irreversible spectral broadening, which we refer to as a hydrodynamic supercontinuum by analogy with optics. This process is shown to be associated with the fission of the initial multisoliton into individual fundamental solitons due to higher-order nonlinear perturbations to the NLS. Numerical simulations using an extended NLS model described by the modified nonlinear Schrödinger equation, show excellent agreement with experiment and highlight the universal role that higher-order nonlinear perturbations to the NLS play in supercontinuum generation. PMID:23952405
ALE shock calculations using a stabilized serendipity rezoning scheme
Budge, K.G.
1991-01-01
A rezone stencil for ALE shock calculations has been developed based on a stabilized variant of the serendipity element. This rezone stencil is compared to the Winslow rezone stencil. Unlike the Winslow stencil, which equalizes element volumes as well as node angles, the serendipity stencil equalizes node angles only. This may be advantageous for calculations involving strong density gradients such as those associated with shock compression. 5 refs., 5 figs.
Pomraning, G.C.
1982-12-31
This course was intended to provide the participant with an introduction to the theory of radiative transfer, and an understanding of the coupling of radiative processes to the equations describing compressible flow. At moderate temperatures (thousands of degrees), the role of the radiation is primarily one of transporting energy by radiative processes. At higher temperatures (millions of degrees), the energy and momentum densities of the radiation field may become comparable to or even dominate the corresponding fluid quantities. In this case, the radiation field significantly affects the dynamics of the fluid, and it is the description of this regime which is generally the charter of radiation hydrodynamics. The course provided a discussion of the relevant physics and a derivation of the corresponding equations, as well as an examination of several simplified models. Practical applications include astrophysics and nuclear weapons effects phenomena.
Regional and local tectonics at Erta Ale caldera, Afar (Ethiopia)
NASA Astrophysics Data System (ADS)
Acocella, Valerio
2006-10-01
Erta Ale volcano lies along the on-shore Red Sea Rift (northern Afar, Ethiopia), separating the Nubia and Danakil plates. Erta Ale has a NNW-SSE elongated caldera, with a subvertical rim scarp, hosting a lava lake. Structural field work was aimed at defining the deformation pattern around the caldera. The caldera consists of along-rim and across-rim structures, resulting from local and regional (maximum extension ˜NE-SW) stress fields, respectively. These structures cross-cut each other at high angles, suggesting that the two stress fields remain distinct, each prevailing during rifting or caldera collapse. The local along-rim extensional fractures are gravity-driven structures that formed due to the retreat of the caldera wall after collapse, and are confined to the region of caldera subsidence. The across-rim structures are mainly located to the N and S of the caldera, where they form rift zones each accommodating a similar amount of extension (˜6.3 m), but displaying different trends and extension directions. Analogue models of interacting fractures are consistent with the Southern Rift being representative of the regional fault kinematics, while the Northern Rift is a local perturbation, resulting from the interaction between two right-stepping rift segments along the Erta Ale Range.
NASA Astrophysics Data System (ADS)
Oger, G.; Marrone, S.; Le Touzé, D.; de Leffe, M.
2016-05-01
This paper addresses the accuracy of the weakly-compressible SPH method. Interpolation defects due to the presence of anisotropic particle structures inherent to the Lagrangian character of the Smoothed Particle Hydrodynamics (SPH) method are highlighted. To avoid the appearance of these structures which are detrimental to the quality of the simulations, a specific transport velocity is introduced and its inclusion within an Arbitrary Lagrangian Eulerian (ALE) formalism is described. Unlike most of existing particle disordering/shifting methods, this formalism avoids the formation of these anisotropic structures while a full consistency with the original Euler or Navier-Stokes equations is maintained. The gain in accuracy, convergence and numerical diffusion of this formalism is shown and discussed through its application to various challenging test cases.
Mueller, Bernhard; Janka, Hans-Thomas; Marek, Andreas E-mail: thj@mpa-garching.mpg.de
2013-03-20
We present a detailed theoretical analysis of the gravitational wave (GW) signal of the post-bounce evolution of core-collapse supernovae (SNe), employing for the first time relativistic, two-dimensional explosion models with multi-group, three-flavor neutrino transport based on the ray-by-ray-plus approximation. The waveforms reflect the accelerated mass motions associated with the characteristic evolutionary stages that were also identified in previous works: a quasi-periodic modulation by prompt post-shock convection is followed by a phase of relative quiescence before growing amplitudes signal violent hydrodynamical activity due to convection and the standing accretion shock instability during the accretion period of the stalled shock. Finally, a high-frequency, low-amplitude variation from proto-neutron star (PNS) convection below the neutrinosphere appears superimposed on the low-frequency trend associated with the aspherical expansion of the SN shock after the onset of the explosion. Relativistic effects in combination with detailed neutrino transport are shown to be essential for quantitative predictions of the GW frequency evolution and energy spectrum, because they determine the structure of the PNS surface layer and its characteristic g-mode frequency. Burst-like high-frequency activity phases, correlated with sudden luminosity increase and spectral hardening of electron (anti-)neutrino emission for some 10 ms, are discovered as new features after the onset of the explosion. They correspond to intermittent episodes of anisotropic accretion by the PNS in the case of fallback SNe. We find stronger signals for more massive progenitors with large accretion rates. The typical frequencies are higher for massive PNSs, though the time-integrated spectrum also strongly depends on the model dynamics.
A hydrodynamic approach to cosmology - Methodology
NASA Technical Reports Server (NTRS)
Cen, Renyue
1992-01-01
The present study describes an accurate and efficient hydrodynamic code for evolving self-gravitating cosmological systems. The hydrodynamic code is a flux-based mesh code originally designed for engineering hydrodynamical applications. A variety of checks were performed which indicate that the resolution of the code is a few cells, providing accuracy for integral energy quantities in the present simulations of 1-3 percent over the whole runs. Six species (H I, H II, He I, He II, He III) are tracked separately, and relevant ionization and recombination processes, as well as line and continuum heating and cooling, are computed. The background radiation field is simultaneously determined in the range 1 eV to 100 keV, allowing for absorption, emission, and cosmological effects. It is shown how the inevitable numerical inaccuracies can be estimated and to some extent overcome.
Grid and Zone Selection for AMR and ALE Schemes
Jameson, L; Johnson, J; Bihari, B; Eliason, D; Peyser, T
2002-09-11
Numerical algorithms are based fundamentally on polynomial interpolation. In regions of the computational domain where a low order polynomial fits the data well one will find small errors in the computed quantities. Therefore, in order to design robust methods for grid selection for AMR schemes or zone selection for ALE schemes, one needs some information on the local polynomial structure of the fields being computed. We provide here algorithms and software for selecting zones based on local estimates of polynomial interpolation error. The algorithms are based on multiresolution and wavelet analysis.
Biotransformation of hop aroma terpenoids by ale and lager yeasts.
King, Andrew J; Dickinson, J Richard
2003-03-01
Terpenoids are important natural flavour compounds, which are introduced to beer via hopping. It has been shown recently that yeasts are able to biotransform some monoterpene alcohols. As a first step towards examining whether yeasts are capable of altering hop terpenoids during the brewing of beer, we investigated whether they were transformed when an ale and lager yeast were cultured in the presence of a commercially available syrup. Both yeasts transformed the monoterpene alcohols geraniol and linalool. The lager yeast also produced acetate esters of geraniol and citronellol. The major terpenoids of hop oil, however, were not biotransformed. Oxygenated terpenoids persisted much longer than the alkenes. PMID:12702246
Compressible Astrophysics Simulation Code
Energy Science and Technology Software Center (ESTSC)
2007-07-18
This is an astrophysics simulation code involving a radiation diffusion module developed at LLNL coupled to compressible hydrodynamics and adaptive mesh infrastructure developed at LBNL. One intended application is to neutrino diffusion in core collapse supernovae.
The Quantum Hydrodynamic Description of Tunneling
Kendrick, Brian K.
2012-06-15
The quantum hydrodynamic approach is based on the de Broglie-Bohm formulation of quantum mechanics. The resulting fluid-like equations of motion describe the flow of probability and an accurate solution to these equations is equivalent to solving the time-dependent Schroedinger equation. Furthermore, the hydrodynamic approach provides new insight into the mechanisms as well as an alternative computational approach for treating tunneling phenomena. New concepts include well-defined 'quantum trajectories', 'quantum potential', and 'quantum force' all of which have classical analogues. The quantum potential and its associated force give rise to all quantum mechanical effects such as zero point energy, tunneling, and interference. A new numerical approach called the Iterative Finite Difference Method (IFDM) will be discussed. The IFDM is used to solve the set of non-linear coupled hydrodynamic equations. It is 2nd-order accurate in both space and time and exhibits exponential convergence with respect to the iteration count. The stability and computational efficiency of the IFDM is significantly improved by using a 'smart' Eulerian grid which has the same computational advantages as a Lagrangian or Arbitrary Lagrangian Eulerian (ALE) grid. The IFDM is also capable of treating anharmonic potentials. Example calculations using the IFDM will be presented which include: a one-dimensional Gaussian wave packet tunneling through an Eckart barrier, a one-dimensional bound-state Morse oscillator, and a two-dimensional (2D) model collinear reaction using an anharmonic potential energy surface. Approximate treatments of the quantum hydrodynamic equations will also be discussed which could allow scaling of the calculations to hundreds of degrees of freedom which is important for treating tunneling phenomena in condensed phase systems.
Developing an Argument Learning Environment Using Agent-Based ITS (ALES)
ERIC Educational Resources Information Center
Abbas, Safia; Sawamura, Hajime
2009-01-01
This paper presents an agent-based educational environment to teach argument analysis (ALES). The idea is based on the Argumentation Interchange Format Ontology (AIF)using "Walton Theory". ALES uses different mining techniques to manage a highly structured arguments repertoire. This repertoire was designed, developed and implemented by us. Our aim…
Analysing Interlanguage Stages ALEs Pass through in the Acquisition of the Simple Past Tense
ERIC Educational Resources Information Center
Mourssi, Anwar
2012-01-01
Building on previous studies of cross-linguistic influence (CLI) on SLA, and principled criteria for confirming its existence in L2 data, an empirical study was run on 74 Arab learners of English (ALEs). A detailed analysis was made of interlanguage stages of the simple past tense forms in 222 written texts produced by ALEs in the classroom…
HALFBREED, an extended capability version of the YAQUI code
Park, J.E.
1985-06-01
For 14 months, beginning in the fall of 1972, the writer was a visiting scientist at the Los Alamos National Laboratory, New Mexico. This memo was prepared at that time to describe several special modifications to the ICE-ALE computer code, YAQUI. The modified code was dubbed HALFBREED.
Modeling thermally driven energetic response of high explosives in ALE3D
Aro, C.; McCallen, R.C.; Neely, R.; Nichols, A.L. III; Sharp, R.
1998-10-01
The authors have improved their ability to model the response of energetic materials to thermal stimuli and the processes involved in the energetic response. Traditionally, the analyses of energetic materials have involved coupled thermal transport/chemical reaction codes. This provides only a reasonable estimate of the time and location of ensuing rapid reaction. To predict the violence of the reaction, the mechanical motion must be included in the wide range of time scales associated with the thermal hazard. The ALE3D code has been modified to assess the hazards associated with heating energetic materials in weapons by coupling to thermal transport model and chemistry models. They have developed an implicit time step option to efficiently and accurately compute the hours of heating to reaction of the energetic material. Since, on these longer time scales materials can be expected to have significant motion, it is even more important to provide high-order advection for all components, including the chemical species. They show two examples of coupled thermal/mechanical/chemical models of energetic materials in thermal environments.
ALE-Phase-field simulations of floating particles
NASA Astrophysics Data System (ADS)
Yue, Pengtao
2015-11-01
In this talk, we will present a hybrid Arbitrary-Lagrangian-Eulerian(ALE)-Phase-Field method for the direct numerical simulation of multiphase flows where fluid interfaces, moving rigid particles, and moving contact lines coexist. Practical applications include Pickering emulsions, froth flotation, and biolocomotion at fluid interface. An ALE algorithm based on the finite element method and an adaptive moving mesh is used to track the moving boundaries of rigid particles. A phase-field method based on the same moving mesh is used to capture the fluid interfaces; meanwhile, the Cahn-Hilliard diffusion automatically takes care of the stress singularity at the moving contact line when a fluid interface intersects a solid surface. To fully resolve the diffuse interface, mesh is locally refined at the fluid interface. All the governing equations, i.e., equations for fluids, interfaces, and particles, are solved implicitly in a unified variational framework. In the end we will present some recent results on the water entry problem and the capillary interaction between floating particles (a.k.a. the Cheerios effect), with a focus on the effect of contact-line dynamics.
Matrix theory on ALE spaces and wrapped membranes
NASA Astrophysics Data System (ADS)
Berenstein, David; Corrado, Richard
1998-09-01
We study the properties of wrapped membranes in matrix theory on ALE spaces. We show that the only BPS bound states of wrapped membranes that can form are roots of the A- D- E group. We determine a bound on the energy of a bound state and find the correct dependence on the blow-up parameters and longitudinal momentum expected from M-theory. For the An-1 series, we construct explicit classical solutions for the wrapped membrane bound states. These states have a very rich structure and have a natural interpretation in terms of non-commutative geometry. In the A1 case, we examine the spectrum of excitations around the wrapped membrane solution and provide an explicit calculation of their energies. The results agree exactly with supergravity calculations.
A Cell-Centered Multiphase ALE Scheme With Structural Coupling
Dunn, Timothy Alan
2012-04-16
A novel computational scheme has been developed for simulating compressible multiphase flows interacting with solid structures. The multiphase fluid is computed using a Godunov-type finite-volume method. This has been extended to allow computations on moving meshes using a direct arbitrary-Eulerian- Lagrangian (ALE) scheme. The method has been implemented within a Lagrangian hydrocode, which allows modeling the interaction with Lagrangian structural regions. Although the above scheme is general enough for use on many applications, the ultimate goal of the research is the simulation of heterogeneous energetic material, such as explosives or propellants. The method is powerful enough for application to all stages of the problem, including the initial burning of the material, the propagation of blast waves, and interaction with surrounding structures. The method has been tested on a number of canonical multiphase tests as well as fluid-structure interaction problems.
The Montana ALE (Autonomous Lunar Excavator) Systems Engineering Report
NASA Technical Reports Server (NTRS)
Hull, Bethanne J.
2012-01-01
On May 2 1-26, 20 12, the third annual NASA Lunabotics Mining Competition will be held at the Kennedy Space Center in Florida. This event brings together student teams from universities around the world to compete in an engineering challenge. Each team must design, build and operate a robotic excavator that can collect artificial lunar soil and deposit it at a target location. Montana State University, Bozeman, is one of the institutions selected to field a team this year. This paper will summarize the goals of MSU's lunar excavator project, known as the Autonomous Lunar Explorer (ALE), along with the engineering process that the MSU team is using to fulfill these goals, according to NASA's systems engineering guidelines.
Thermal imaging of Erta 'Ale active lava lake (Ethiopia)
NASA Astrophysics Data System (ADS)
Spampinato, L.; Oppenheimer, C.; Calvari, S.; Cannata, A.; Montalto, P.
2009-04-01
Active lava lakes represent the uppermost portion of a volume of convective magma exposed to the atmosphere, and provide open windows on magma dynamics within shallow reservoirs. Erta ‘Ale volcano located within the Danakil Depression in Ethiopia, hosts one of the few permanent convecting lava lakes, active at least since the last century. We report here the main features of Erta ‘Ale lake surface investigated using a hand-held infrared thermal camera between 11 and 12 November 2006. In both days, the lake surface was mainly characterized by efficient magma circulation reflecting in the formation of well-marked incandescent cracks and wide crust plates. These crossed the lake from the upwelling to the downwelling margin with mean speeds ranging between 0.01 and 0.15 m s-1. Hot spots opened eventually in the middle of crust plates and/or along cracks. These produced explosive activity lasting commonly between ~10 and 200 sec. Apparent temperatures at cracks ranged between ~700 and 1070˚C, and between ~300 and 500˚C at crust plates. Radiant power output of the lake varied between ~45 and 76 MW according to the superficial activity and continuous resurfacing of the lake. Time series analysis of the radiant power output data reveals cyclicity with a period of ~10 min. The combination of visual and thermal observations with apparent mean temperatures and convection rates allows us to interpret these signals as the periodic release of hot overpressured gas bubbles at the lake surface.
Hydrodynamics from Landau initial conditions
Sen, Abhisek; Gerhard, Jochen; Torrieri, Giorgio; Read jr, Kenneth F.; Wong, Cheuk-Yin
2015-01-01
We investigate ideal hydrodynamic evolution, with Landau initial conditions, both in a semi-analytical 1+1D approach and in a numerical code incorporating event-by-event variation with many events and transverse density inhomogeneities. The object of the calculation is to test how fast would a Landau initial condition transition to a commonly used boost-invariant expansion. We show that the transition to boost-invariant flow occurs too late for realistic setups, with corrections of O (20 - 30%) expected at freezeout for most scenarios. Moreover, the deviation from boost-invariance is correlated with both transverse flow and elliptic flow, with the more highly transversely flowing regions also showing the most violation of boost invariance. Therefore, if longitudinal flow is not fully developed at the early stages of heavy ion collisions, 2+1 dimensional hydrodynamics is inadequate to extract transport coefficients of the quark-gluon plasma. Based on [1, 2
Hierarchical Material Models for Fragmentation Modeling in NIF-ALE-AMR
Fisher, A; Masters, N; Koniges, A; Anderson, R; Gunney, B; Wang, P; Becker, R; Benson, D; Dixit, P
2007-08-28
Fragmentation is a fundamental process that naturally spans micro to macroscopic scales. Recent advances in algorithms, computer simulations, and hardware enable us to connect the continuum to microstructural regimes in a real simulation through a heterogeneous multiscale mathematical model. We apply this model to the problem of predicting how targets in the NIF chamber dismantle, so that optics and diagnostics can be protected from damage. The mechanics of the initial material fracture depend on the microscopic grain structure. In order to effectively simulate the fragmentation, this process must be modeled at the subgrain level with computationally expensive crystal plasticity models. However, there are not enough computational resources to model the entire NIF target at this microscopic scale. In order to accomplish these calculations, a hierarchical material model (HMM) is being developed. The HMM will allow fine-scale modeling of the initial fragmentation using computationally expensive crystal plasticity, while the elements at the mesoscale can use polycrystal models, and the macroscopic elements use analytical flow stress models. The HMM framework is built upon an adaptive mesh refinement (AMR) capability. We present progress in implementing the HMM in the NIF-ALE-AMR code. Additionally, we present test simulations relevant to NIF targets.
Hierarchical Material Models for Fragmentation Modeling in NIF-ALE-AMR
Fisher, A C; Masters, N D; Dixit, P; Benson, D J; Koniges, A E; Anderson, R W; Gunney, B N; Wang, P; Becker, R
2008-01-10
Fragmentation is a fundamental process that naturally spans micro to macroscopic scales. Recent advances in algorithms, computer simulations, and hardware enable us to connect the continuum to microstructural regimes in a real simulation through a heterogeneous multiscale mathematical model. We apply this model to the problem of predicting how targets in the NIF chamber dismantle, so that optics and diagnostics can be protected from damage. The mechanics of the initial material fracture depend on the microscopic grain structure. In order to effectively simulate the fragmentation, this process must be modeled at the subgrain level with computationally expensive crystal plasticity models. However, there are not enough computational resources to model the entire NIF target at this microscopic scale. In order to accomplish these calculations, a hierarchical material model (HMM) is being developed. The HMM will allow fine-scale modeling of the initial fragmentation using computationally expensive crystal plasticity, while the elements at the mesoscale can use polycrystal models, and the macroscopic elements use analytical flow stress models. The HMM framework is built upon an adaptive mesh refinement (AMR) capability. We present progress in implementing the HMM in the NIF-ALE-AMR code. Additionally, we present test simulations relevant to NIF targets.
Testing hydrodynamics schemes in galaxy disc simulations
NASA Astrophysics Data System (ADS)
Few, C. G.; Dobbs, C.; Pettitt, A.; Konstandin, L.
2016-08-01
We examine how three fundamentally different numerical hydrodynamics codes follow the evolution of an isothermal galactic disc with an external spiral potential. We compare an adaptive mesh refinement code (RAMSES), a smoothed particle hydrodynamics code (SPHNG), and a volume-discretized mesh-less code (GIZMO). Using standard refinement criteria, we find that RAMSES produces a disc that is less vertically concentrated and does not reach such high densities as the SPHNG or GIZMO runs. The gas surface density in the spiral arms increases at a lower rate for the RAMSES simulations compared to the other codes. There is also a greater degree of substructure in the SPHNG and GIZMO runs and secondary spiral arms are more pronounced. By resolving the Jeans length with a greater number of grid cells, we achieve more similar results to the Lagrangian codes used in this study. Other alterations to the refinement scheme (adding extra levels of refinement and refining based on local density gradients) are less successful in reducing the disparity between RAMSES and SPHNG/GIZMO. Although more similar, SPHNG displays different density distributions and vertical mass profiles to all modes of GIZMO (including the smoothed particle hydrodynamics version). This suggests differences also arise which are not intrinsic to the particular method but rather due to its implementation. The discrepancies between codes (in particular, the densities reached in the spiral arms) could potentially result in differences in the locations and time-scales for gravitational collapse, and therefore impact star formation activity in more complex galaxy disc simulations.
Hydrodynamics of micropipette aspiration.
Drury, J L; Dembo, M
1999-01-01
The dynamics of human neutrophils during micropipette aspiration are frequently analyzed by approximating these cells as simple slippery droplets of viscous fluid. Here, we present computations that reveal the detailed predictions of the simplest and most idealized case of such a scheme; namely, the case where the fluid of the droplet is homogeneous and Newtonian, and the surface tension of the droplet is constant. We have investigated the behavior of this model as a function of surface tension, droplet radius, viscosity, aspiration pressure, and pipette radius. In addition, we have tabulated a dimensionless factor, M, which can be utilized to calculate the apparent viscosity of the slippery droplet. Computations were carried out using a low Reynolds number hydrodynamics transport code based on the finite-element method. Although idealized and simplistic, we find that the slippery droplet model predicts many observed features of neutrophil aspiration. However, there are certain features that are not observed in neutrophils. In particular, the model predicts dilation of the membrane past the point of being continuous, as well as a reentrant jet at high aspiration pressures. PMID:9876128
Disruptive Innovation in Numerical Hydrodynamics
Waltz, Jacob I.
2012-09-06
We propose the research and development of a high-fidelity hydrodynamic algorithm for tetrahedral meshes that will lead to a disruptive innovation in the numerical modeling of Laboratory problems. Our proposed innovation has the potential to reduce turnaround time by orders of magnitude relative to Advanced Simulation and Computing (ASC) codes; reduce simulation setup costs by millions of dollars per year; and effectively leverage Graphics Processing Unit (GPU) and future Exascale computing hardware. If successful, this work will lead to a dramatic leap forward in the Laboratory's quest for a predictive simulation capability.
A base-line model for direct-drive ICF implosions in the xRAGE code
NASA Astrophysics Data System (ADS)
Dodd, E. S.; Schmidt, J. H.; Cooley, J. H.
2013-10-01
xRAGE is a radiation-hydrodynamics code using a Godunov solver on an Eulerian mesh with an adaptive mesh refinement (AMR) algorithm, and a radiation diffusion algorithm. It has been used to study fluid flow in highly distorted systems, where arbitrary Langrian Eulerian (ALE) methods are not the method of choice, which can include ICF. A version of the code, called CASSIO, uses an implicit Monte Carlo (IMC) method for radiation transport. However, specific physics packages relevant to ICF have not been available in the past, and which include laser propagation, three-temperature plasma physics and non-LTE opacity calculations. As these physics packages become available and undergo testing, a suite of validation problems is being developed to test the code under conditions relevant to ICF. The direct-drive ICF capsules fielded for the High-Z project will be used as the initial suite of validation problems. This presentation will discuss the capsule experiments and the physics used in the modeling, as well as a brief overview of the software framework used to standardize the verification and validation process. Supported under the U. S. Department of Energy by the Los Alamos National Security, LLC under contract DE-AC52-06NA25396. LA-UR-13-25068.
Field temperature measurements at Erta'Ale Lava Lake, Ethiopia
NASA Astrophysics Data System (ADS)
Burgi, Pierre-Yves; Caillet, Marc; Haefeli, Steven
2002-06-01
The shield volcano Erta'Ale, situated in the Danakil Depression, Ethiopia, is known for its active lava lake. In February 2001, our team visited this lake, located inside an 80-m-deep pit, to perform field temperature measurements. The distribution and variation of temperature inside the lake were obtained on the basis of infrared radiation measurements performed from the rim of the pit and from the lake shores. The crust temperature was also determined from the lake shores with a thermocouple to calibrate the pyrometer. We estimated an emissivity of the basalt of 0.74 from this experiment. Through the application of the Stefan-Boltzmann law, we then obtained an estimate of the total radiative heat flux, constrained by pyrometer measurements of the pit, and visual observations of the lake activity. Taking into account the atmospheric convective heat flux, the convected magma mass flux needed to balance the energy budget was subsequently derived and found to represent between 510 and 580 kg s-1. The surface circulation of this mass flux was also analyzed through motion processing techniques applied to video images of the lake. Electronic supplementary material to this paper can be obtained by using the Springer LINK server located at http://dx.doi.org/10.1007/s00445-002-0224-3.
ICEd-ALE Treatment of 3-D Fluid Flow.
Energy Science and Technology Software Center (ESTSC)
1999-09-13
Version: 00 SALE3D calculates three-dimensional fluid flow at all speeds, from the incompressible limit to highly supersonic. An implicit treatment of the pressure calculation similar to that in the Implicit Continuous-fluid Eulerian (ICE) technique provides this flow speed flexibility. In addition, the computing mesh may move with the fluid in a typical Lagrangian fashion, be held in an Eulerian manner, or move in some arbitrarily specified way to provide a continuous rezoning capability. This latitudemore » results from use of an Arbitrary Lagrangian-Eulerian (ALE) treatment of the mesh. The partial differential equations solved are the Navier-Stokes equations and the mass and internal energy equations. The fluid pressure is determined from an equation of state and supplemented with an artificial viscous pressure for the computation of shock waves. The computing mesh consists of a three-dimensional network of arbitrarily shaped, six-sided deformable cells, and a variety of user-selectable boundary conditions are provided in the program.« less
Smoothed Particle Hydrodynamics for water wave propagation in a channel
NASA Astrophysics Data System (ADS)
Omidvar, Pourya; Norouzi, Hossein; Zarghami, Ahad
2015-01-01
In this paper, Smoothed Particle Hydrodynamics (SPH) is used to simulate the propagation of waves in an intermediate depth water channel. The major advantage of using SPH is that no special treatment of the free surface is required, which is advantageous for simulating highly nonlinear flows with possible wave breaking. The SPH method has an option of different formulations with their own advantages and drawbacks to be implemented. Here, we apply the classical and Arbitrary Lagrange-Euler (ALE) formulation for wave propagation in a water channel. The classical SPH should come with an artificial viscosity which stabilizes the numerical algorithm and increases the accuracy. Here, we will show that the use of classical SPH with an artificial viscosity may cause the waves in the channel to decay. On the other hand, we will show that using the ALE-SPH algorithm with a Riemann solver is more stable, and in addition to producing the pressure fields with much less numerical noise, the waves propagate in the channel without dissipation.
Hydrodynamic simulations with the Godunov smoothed particle hydrodynamics
NASA Astrophysics Data System (ADS)
Murante, G.; Borgani, S.; Brunino, R.; Cha, S.-H.
2011-10-01
We present results based on an implementation of the Godunov smoothed particle hydrodynamics (GSPH), originally developed by Inutsuka, in the GADGET-3 hydrodynamic code. We first review the derivation of the GSPH discretization of the equations of moment and energy conservation, starting from the convolution of these equations with the interpolating kernel. The two most important aspects of the numerical implementation of these equations are (a) the appearance of fluid velocity and pressure obtained from the solution of the Riemann problem between each pair of particles, and (b) the absence of an artificial viscosity term. We carry out three different controlled hydrodynamical three-dimensional tests, namely the Sod shock tube, the development of Kelvin-Helmholtz instabilities in a shear-flow test and the 'blob' test describing the evolution of a cold cloud moving against a hot wind. The results of our tests confirm and extend in a number of aspects those recently obtained by Cha, Inutsuka & Nayakshin: (i) GSPH provides a much improved description of contact discontinuities, with respect to smoothed particle hydrodynamics (SPH), thus avoiding the appearance of spurious pressure forces; (ii) GSPH is able to follow the development of gas-dynamical instabilities, such as the Kevin-Helmholtz and the Rayleigh-Taylor ones; (iii) as a result, GSPH describes the development of curl structures in the shear-flow test and the dissolution of the cold cloud in the 'blob' test. Besides comparing the results of GSPH with those from standard SPH implementations, we also discuss in detail the effect on the performances of GSPH of changing different aspects of its implementation: choice of the number of neighbours, accuracy of the interpolation procedure to locate the interface between two fluid elements (particles) for the solution of the Riemann problem, order of the reconstruction for the assignment of variables at the interface, choice of the limiter to prevent oscillations of
A point-centered arbitrary Lagrangian Eulerian hydrodynamic approach for tetrahedral meshes
Morgan, Nathaniel R.; Waltz, Jacob I.; Burton, Donald E.; Charest, Marc R.; Canfield, Thomas R.; Wohlbier, John G.
2015-02-24
We present a three dimensional (3D) arbitrary Lagrangian Eulerian (ALE) hydrodynamic scheme suitable for modeling complex compressible flows on tetrahedral meshes. The new approach stores the conserved variables (mass, momentum, and total energy) at the nodes of the mesh and solves the conservation equations on a control volume surrounding the point. This type of an approach is termed a point-centered hydrodynamic (PCH) method. The conservation equations are discretized using an edge-based finite element (FE) approach with linear basis functions. All fluxes in the new approach are calculated at the center of each tetrahedron. A multidirectional Riemann-like problem is solved atmore » the center of the tetrahedron. The advective fluxes are calculated by solving a 1D Riemann problem on each face of the nodal control volume. A 2-stage Runge–Kutta method is used to evolve the solution forward in time, where the advective fluxes are part of the temporal integration. The mesh velocity is smoothed by solving a Laplacian equation. The details of the new ALE hydrodynamic scheme are discussed. Results from a range of numerical test problems are presented.« less
A point-centered arbitrary Lagrangian Eulerian hydrodynamic approach for tetrahedral meshes
Morgan, Nathaniel R.; Waltz, Jacob I.; Burton, Donald E.; Charest, Marc R.; Canfield, Thomas R.; Wohlbier, John G.
2015-02-24
We present a three dimensional (3D) arbitrary Lagrangian Eulerian (ALE) hydrodynamic scheme suitable for modeling complex compressible flows on tetrahedral meshes. The new approach stores the conserved variables (mass, momentum, and total energy) at the nodes of the mesh and solves the conservation equations on a control volume surrounding the point. This type of an approach is termed a point-centered hydrodynamic (PCH) method. The conservation equations are discretized using an edge-based finite element (FE) approach with linear basis functions. All fluxes in the new approach are calculated at the center of each tetrahedron. A multidirectional Riemann-like problem is solved at the center of the tetrahedron. The advective fluxes are calculated by solving a 1D Riemann problem on each face of the nodal control volume. A 2-stage Runge–Kutta method is used to evolve the solution forward in time, where the advective fluxes are part of the temporal integration. The mesh velocity is smoothed by solving a Laplacian equation. The details of the new ALE hydrodynamic scheme are discussed. Results from a range of numerical test problems are presented.
Supernova-relevant hydrodynamic instability experiment on the Nova laser
Kane, J.; Arnett, D.; Remington, B.A.; Glendinning, S.G.; Castor, J.; Rubenchik, A.; Berning, M.
1996-02-12
Supernova 1987A focused attention on the critical role of hydrodynamic instabilities in the evolution of supernovae. On quite a separate front, the detrimental effect of hydrodynamic instabilities in inertial confinement fusion (ICF) has long been known. Tools from both areas are being tested on a common project. At Lawrence Livermore National Laboratory (LLNL), the Nova Laser is being used in scaled laboratory experiments of hydrodynamic mixing under supernova-relevant conditions. Numerical simulations of the experiments are being done, using hydrodynamics codes at the Laboratory, and astrophysical codes successfully used to model the hydrodynamics of supernovae. A two-layer package composed of Cu and CH{sub 2} with a single mode sinusoidal 1D perturbation at the interface, shocked by indirect laser drive from the Cu side of the package, produced significant Rayleigh-Taylor (RT) growth in the nonlinear regime. The scale and gross structure of the growth was successfully modeled, by mapping an early-time simulation done with 1D HYADES, a radiation transport code, into 2D CALE, a LLNL hydrodynamics code. The HYADES result was also mapped in 2D into the supernova code PROMETHEUS, which was also able to reproduce the scale and gross structure of the growth.
Identification of variable convective regimes at Erta Ale Lava Lake
NASA Astrophysics Data System (ADS)
Harris, Andrew J. L.; Carniel, Roberto; Jones, Josh
2005-04-01
During February 17-19, 2002, we collected a combined thermal and seismic data set for persistent lava lake activity at Erta Ale volcano, Ethiopia. These data indicate that the lake cycled between periods characterized by low (0.01-0.08 m s -1) and high (0.1-0.4 m s -1) surface velocities, typically lasting tens to hundreds of minutes. These periods of high and low velocity motion define periods of vigorous and sluggish convection, respectively. Spectral analysis revealed that vigorous convection periods were characterized by high frequencies and energies in the thermal data and an increased presence of high-frequency energy in the seismic data. The data show that vigorous periods were characterized by formation of hot, short-lived, plastic crusts, and sluggish periods by cooler, longer lived, brittle crusts. Here, the higher transit velocity across the lake surface from upwelling zones of crust formation to downwelling zones of crust destruction during the vigorous periods decreases the crust lifetime. This in turn decreases the total cooling and thickening experienced by a plate of crust moving across the lake surface. Two scenarios can be envisaged to explain such convection cycles. The first relates variable convection rates to changes in the volume flux and rheology of magma entering the lake. In the second, cyclic convection is set up by the generation of convective instabilities within the lake. In this case, cooling of a surface layer generates a slow moving, viscous, increasingly dense convection layer at the lake surface which is consumed and replaced during overturn.
Two-dimensional protein map of an "ale"-brewing yeast strain: proteome dynamics during fermentation.
Kobi, Dominique; Zugmeyer, Sandra; Potier, Serge; Jaquet-Gutfreund, Laurence
2004-12-01
The first protein map of an ale-fermenting yeast is presented in this paper: 205 spots corresponding to 133 different proteins were identified. Comparison of the proteome of this ale strain with a lager brewing yeast and the Saccharomyces cerevisiae strain S288c confirmed that this ale strain is much closer to S288c than the lager strain at the proteome level. The dynamics of the ale-brewing yeast proteome during production-scale fermentation was analysed at the beginning and end of the first and the third usage of the yeast (called generation in the brewing industry). During the first generation, most changes were related to the switch from aerobic propagation to anaerobic fermentation. Fewer changes were observed during the third generation but certain stress-response proteins such as Hsp26p, Ssa4p and Pnc1p exhibited constitutive expression in subsequent generations. The ale brewing yeast strain appears to be quite well adapted to fermentation conditions and stresses. PMID:15556083
Calculation of Chemical Detonation Waves With Hydrodynamics and Thermochemical Equation of State
Howard, W M; Fried, L E; Souers, P C; Vitello, P A
2001-08-01
We model detonation waves for solid explosives, using 2-D Arbitrary Lagrange Eulerian (ALE) hydrodynamics, with an equation of state (EOS) based on thermochemical equilibrium, coupled with simple kinetic rate laws for a few reactants. The EOS for the product species is based on either a BKWC EOS or on an exponential-6 potential model, whose parameters are fitted to a wide range of shock Hugoniot and static compression data. We show some results for the non ideal explosive, urea nitrate. Such a model is a powerful tool for studying such processes as initiation, detonation wave propagation and detonation wave propagation as a function of cylindrical radius.
Hydrodynamic effects in proteins
NASA Astrophysics Data System (ADS)
Szymczak, Piotr; Cieplak, Marek
2011-01-01
Experimental and numerical results pertaining to flow-induced effects in proteins are reviewed. Special emphasis is placed on shear-induced unfolding and on the role of solvent mediated hydrodynamic interactions in the conformational transitions in proteins.
Hydrodynamic effects in proteins.
Szymczak, Piotr; Cieplak, Marek
2011-01-26
Experimental and numerical results pertaining to flow-induced effects in proteins are reviewed. Special emphasis is placed on shear-induced unfolding and on the role of solvent mediated hydrodynamic interactions in the conformational transitions in proteins. PMID:21406855
Lohou, Elodie; Sasaki, N André; Boullier, Agnès; Sonnet, Pascal
2016-10-21
An important part of pathogenesis of Alzheimer's disease (AD) is attributed to the contribution of AGE (Advanced Glycation Endproducts) and ALE (Advanced Lipid peroxidation Endproducts). In order to attenuate the progression of AD, we designed a new type of molecules that consist of two trapping parts for reactive carbonyl species (RCS) and reactive oxygen species (ROS), precursors of AGE and ALE, respectively. These molecules also chelate transition metals, the promoters of ROS formation. In this paper, synthesis of the new AGE/ALE inhibitors and evaluation of their physicochemical and biological properties (carbonyl trapping capacity, antioxidant activity, Cu(2+)-chelating capacity, cytotoxicity and protective effect against in vitro MGO-induced apoptosis in the model AD cell-line PC12) are described. It is found that compounds 40b and 51e possess promising therapeutic potentials for treating AD. PMID:27451257
NASA Astrophysics Data System (ADS)
Jones, J. P.; Carniel, R.; Malone, S. D.
2012-02-01
Subband decomposition and reconstruction (SDR) provides a quantitative, semi-automated, rapid means of analyzing volcanic tremor, which can recover signals that dominate different parts of the frequency spectrum while preserving polarization and phase. Here, applied to data from a two week experiment at Erta 'Ale in Nov-Dec 2003, we demonstrate that the SDR method can identify signals corresponding to source processes active in several different physical regions of the Erta 'Ale caldera. Different recovered signals suggest that the continuous tremor at Erta 'Ale is a composite of several seismic sources, including conduit resonance, bubble bursting phenomena, and degassing at fumaroles. These signals are seen throughout the 2003 experiment, suggesting that several competing source models of volcanic tremor can produce signals at the same volcanic conduit system simultaneously.
Testing hydrodynamics schemes in galaxy disc simulations
NASA Astrophysics Data System (ADS)
Few, C. G.; Dobbs, C.; Pettitt, A.; Konstandin, L.
2016-08-01
We examine how three fundamentally different numerical hydrodynamics codes follow the evolution of an isothermal galactic disc with an external spiral potential. We compare an adaptive mesh refinement code (RAMSES), a smoothed particle hydrodynamics code (sphNG), and a volume-discretised meshless code (GIZMO). Using standard refinement criteria, we find that RAMSES produces a disc that is less vertically concentrated and does not reach such high densities as the sphNG or GIZMO runs. The gas surface density in the spiral arms increases at a lower rate for the RAMSES simulations compared to the other codes. There is also a greater degree of substructure in the sphNG and GIZMO runs and secondary spiral arms are more pronounced. By resolving the Jeans' length with a greater number of grid cells we achieve more similar results to the Lagrangian codes used in this study. Other alterations to the refinement scheme (adding extra levels of refinement and refining based on local density gradients) are less successful in reducing the disparity between RAMSES and sphNG/GIZMO. Although more similar, sphNG displays different density distributions and vertical mass profiles to all modes of GIZMO (including the smoothed particle hydrodynamics version). This suggests differences also arise which are not intrinsic to the particular method but rather due to its implementation. The discrepancies between codes (in particular, the densities reached in the spiral arms) could potentially result in differences in the locations and timescales for gravitational collapse, and therefore impact star formation activity in more complex galaxy disc simulations.
Parker, Neva; James, Steve; Dicks, Jo; Bond, Chris; Nueno-Palop, Carmen; White, Chris; Roberts, Ian N
2015-01-01
Five British ale yeast strains were subjected to flavour profiling under brewery fermentation conditions in which all other brewing parameters were kept constant. Significant variation was observed in the timing and quantity of flavour-related chemicals produced. Genetic tests showed no evidence of hybrid origins in any of the strains, including one strain previously reported as a possible hybrid of Saccharomyces cerevisiae and S. bayanus. Variation maintained in historical S. cerevisiae ale yeast collections is highlighted as a potential source of novelty in innovative strain improvement for bioflavour production. Copyright © 2014 John Wiley & Sons, Ltd. PMID:25361168
Parker, Neva; James, Steve; Dicks, Jo; Bond, Chris; Nueno-Palop, Carmen; White, Chris; Roberts, Ian N
2015-01-01
Five British ale yeast strains were subjected to flavour profiling under brewery fermentation conditions in which all other brewing parameters were kept constant. Significant variation was observed in the timing and quantity of flavour-related chemicals produced. Genetic tests showed no evidence of hybrid origins in any of the strains, including one strain previously reported as a possible hybrid of Saccharomyces cerevisiae and S. bayanus. Variation maintained in historical S. cerevisiae ale yeast collections is highlighted as a potential source of novelty in innovative strain improvement for bioflavour production. PMID:25361168
First light with ALES: A 2-5 micron adaptive optics Integral Field Spectrograph for the LBT
NASA Astrophysics Data System (ADS)
Skemer, Andrew J.; Hinz, Philip; Montoya, Manny; Skrutskie, Michael F.; Leisenring, Jarron; Durney, Oli; Woodward, Charles E.; Wilson, John; Nelson, Matt; Bailey, Vanessa; Defrere, Denis; Stone, Jordan
2015-09-01
Integral field spectrographs are an important technology for exoplanet imaging, due to their ability to take spectra in a high-contrast environment, and improve planet detection sensitivity through spectral differential imaging. ALES is the first integral field spectrograph capable of imaging exoplanets from 3-5 μm, and will extend our ability to characterize self-luminous exoplanets into a wavelength range where they peak in brightness. ALES is installed inside LBTI/LMIRcam on the Large Binocular Telescope, taking advantage of existing AO systems, camera optics, and a HAWAII-2RG detector. The new optics that comprise ALES are a Keplerian magnifier, a silicon lenslet array with diffraction suppressing pinholes, a direct vision prism, and calibration optics. All of these components are installed in filter wheels making ALES a completely modular design. ALES saw first light at the LBT in June 2015.
Hydrodynamic simulations of recurrent novae
NASA Astrophysics Data System (ADS)
Starrfield, S.; Sparks, W. M.; Truran, J. W.; Sion, E. M.
1984-12-01
Simulations of the 1979 outburst of the recurrent nova U Scorpii using a Lagrangian, hydrodynamic computer code which incorporates accretion in the evolution to the outburst are discussed. Three evolutionary sequences were computed in an attempt to understand the very rapid outburst and short recurrence time of this most unusual nova. It is now possible to reproduce the CNO composition of the ejected material, the light curve, the amount of ejected material, and the kinetic energy of the ejecta. The best sequence studied involved accretion of solar rich material onto a 1.38 solar magnatude white dwarf at a rate of 1.6 x 10 to the minus 8 solar magnatude per year.
Environmental Fluid Dynamics Code
The Environmental Fluid Dynamics Code (EFDC)is a state-of-the-art hydrodynamic model that can be used to simulate aquatic systems in one, two, and three dimensions. It has evolved over the past two decades to become one of the most widely used and technically defensible hydrodyn...
Progress in smooth particle hydrodynamics
Wingate, C.A.; Dilts, G.A.; Mandell, D.A.; Crotzer, L.A.; Knapp, C.E.
1998-07-01
Smooth Particle Hydrodynamics (SPH) is a meshless, Lagrangian numerical method for hydrodynamics calculations where calculational elements are fuzzy particles which move according to the hydrodynamic equations of motion. Each particle carries local values of density, temperature, pressure and other hydrodynamic parameters. A major advantage of SPH is that it is meshless, thus large deformation calculations can be easily done with no connectivity complications. Interface positions are known and there are no problems with advecting quantities through a mesh that typical Eulerian codes have. These underlying SPH features make fracture physics easy and natural and in fact, much of the applications work revolves around simulating fracture. Debris particles from impacts can be easily transported across large voids with SPH. While SPH has considerable promise, there are some problems inherent in the technique that have so far limited its usefulness. The most serious problem is the well known instability in tension leading to particle clumping and numerical fracture. Another problem is that the SPH interpolation is only correct when particles are uniformly spaced a half particle apart leading to incorrect strain rates, accelerations and other quantities for general particle distributions. SPH calculations are also sensitive to particle locations. The standard artificial viscosity treatment in SPH leads to spurious viscosity in shear flows. This paper will demonstrate solutions for these problems that they and others have been developing. The most promising is to replace the SPH interpolant with the moving least squares (MLS) interpolant invented by Lancaster and Salkauskas in 1981. SPH and MLS are closely related with MLS being essentially SPH with corrected particle volumes. When formulated correctly, JLS is conservative, stable in both compression and tension, does not have the SPH boundary problems and is not sensitive to particle placement. The other approach to
Resurgence in extended hydrodynamics
NASA Astrophysics Data System (ADS)
Aniceto, Inês; Spaliński, Michał
2016-04-01
It has recently been understood that the hydrodynamic series generated by the Müller-Israel-Stewart theory is divergent and that this large-order behavior is consistent with the theory of resurgence. Furthermore, it was observed that the physical origin of this is the presence of a purely damped nonhydrodynamic mode. It is very interesting to ask whether this picture persists in cases where the spectrum of nonhydrodynamic modes is richer. We take the first step in this direction by considering the simplest hydrodynamic theory which, instead of the purely damped mode, contains a pair of nonhydrodynamic modes of complex conjugate frequencies. This mimics the pattern of black brane quasinormal modes which appear on the gravity side of the AdS/CFT description of N =4 supersymmetric Yang-Mills plasma. We find that the resulting hydrodynamic series is divergent in a way consistent with resurgence and precisely encodes information about the nonhydrodynamic modes of the theory.
Scaling supernova hydrodynamics to the laboratory
Kane, J.O.
1999-06-01
Supernova (SN) 1987A focused attention on the critical role of hydrodynamic instabilities in the evolution of supernovae. To test the modeling of these instabilities, we are developing laboratory experiments of hydrodynamic mixing under conditions relevant to supernovae. Initial results were reported in J. Kane et al., Astrophys. J.478, L75 (1997) The Nova laser is used to shock two-layer targets, producing Richtmyer-Meshkov (RM) and Rayleigh-Taylor (RT) instabilities at the interfaces between the layers, analogous to instabilities seen at the interfaces of SN 1987A. Because the hydrodynamics in the laser experiments at intermediate times (3-40 ns) and in SN 1987A at intermediate times (5 s-10{sup 4} s) are well described by the Euler equations, the hydrodynamics scale between the two regimes. The experiments are modeled using the hydrodynamics codes HYADES and CALE, and the supernova code PROMETHEUS, thus serving as a benchmark for PROMETHEUS. Results of the experiments and simulations are presented. Analysis of the spike and bubble velocities in the experiment using potential flow theory and a modified Ott thin shell theory is presented. A numerical study of 2D vs. 3D differences in instability growth at the O-He and He-H interface of SN 1987A, and the design for analogous laser experiments are presented. We discuss further work to incorporate more features of the SN in the experiments, including spherical geometry, multiple layers and density gradients. Past and ongoing work in laboratory and laser astrophysics is reviewed, including experimental work on supernova remnants (SNRs). A numerical study of RM instability in SNRs is presented.
Synchronization via Hydrodynamic Interactions
NASA Astrophysics Data System (ADS)
Kendelbacher, Franziska; Stark, Holger
2013-12-01
An object moving in a viscous fluid creates a flow field that influences the motion of neighboring objects. We review examples from nature in the microscopic world where such hydrodynamic interactions synchronize beating or rotating filaments. Bacteria propel themselves using a bundle of rotating helical filaments called flagella which have to be synchronized in phase. Other micro-organisms are covered with a carpet of smaller filaments called cilia on their surfaces. They beat highly synchronized so that metachronal waves propagate along the cell surfaces. We explore both examples with the help of simple model systems and identify generic properties for observing synchronization by hydrodynamic interactions.
Skew resisting hydrodynamic seal
Conroy, William T.; Dietle, Lannie L.; Gobeli, Jeffrey D.; Kalsi, Manmohan S.
2001-01-01
A novel hydrodynamically lubricated compression type rotary seal that is suitable for lubricant retention and environmental exclusion. Particularly, the seal geometry ensures constraint of a hydrodynamic seal in a manner preventing skew-induced wear and provides adequate room within the seal gland to accommodate thermal expansion. The seal accommodates large as-manufactured variations in the coefficient of thermal expansion of the sealing material, provides a relatively stiff integral spring effect to minimize pressure-induced shuttling of the seal within the gland, and also maintains interfacial contact pressure within the dynamic sealing interface in an optimum range for efficient hydrodynamic lubrication and environment exclusion. The seal geometry also provides for complete support about the circumference of the seal to receive environmental pressure, as compared the interrupted character of seal support set forth in U.S. Pat. Nos. 5,873,576 and 6,036,192 and provides a hydrodynamic seal which is suitable for use with non-Newtonian lubricants.
Simple Waves in Ideal Radiation Hydrodynamics
Johnson, B M
2008-09-03
In the dynamic diffusion limit of radiation hydrodynamics, advection dominates diffusion; the latter primarily affects small scales and has negligible impact on the large scale flow. The radiation can thus be accurately regarded as an ideal fluid, i.e., radiative diffusion can be neglected along with other forms of dissipation. This viewpoint is applied here to an analysis of simple waves in an ideal radiating fluid. It is shown that much of the hydrodynamic analysis carries over by simply replacing the material sound speed, pressure and index with the values appropriate for a radiating fluid. A complete analysis is performed for a centered rarefaction wave, and expressions are provided for the Riemann invariants and characteristic curves of the one-dimensional system of equations. The analytical solution is checked for consistency against a finite difference numerical integration, and the validity of neglecting the diffusion operator is demonstrated. An interesting physical result is that for a material component with a large number of internal degrees of freedom and an internal energy greater than that of the radiation, the sound speed increases as the fluid is rarefied. These solutions are an excellent test for radiation hydrodynamic codes operating in the dynamic diffusion regime. The general approach may be useful in the development of Godunov numerical schemes for radiation hydrodynamics.
SPHGR: Smoothed-Particle Hydrodynamics Galaxy Reduction
NASA Astrophysics Data System (ADS)
Thompson, Robert
2015-02-01
SPHGR (Smoothed-Particle Hydrodynamics Galaxy Reduction) is a python based open-source framework for analyzing smoothed-particle hydrodynamic simulations. Its basic form can run a baryonic group finder to identify galaxies and a halo finder to identify dark matter halos; it can also assign said galaxies to their respective halos, calculate halo & galaxy global properties, and iterate through previous time steps to identify the most-massive progenitors of each halo and galaxy. Data about each individual halo and galaxy is collated and easy to access. SPHGR supports a wide range of simulations types including N-body, full cosmological volumes, and zoom-in runs. Support for multiple SPH code outputs is provided by pyGadgetReader (ascl:1411.001), mainly Gadget (ascl:0003.001) and TIPSY (ascl:1111.015).
Hydrodynamic shock wave studies within a kinetic Monte Carlo approach
NASA Astrophysics Data System (ADS)
Sagert, Irina; Bauer, Wolfgang; Colbry, Dirk; Howell, Jim; Pickett, Rodney; Staber, Alec; Strother, Terrance
2014-06-01
We introduce a massively parallelized test-particle based kinetic Monte Carlo code that is capable of modeling the phase space evolution of an arbitrarily sized system that is free to move in and out of the continuum limit. Our code combines advantages of the DSMC and the Point of Closest Approach techniques for solving the collision integral. With that, it achieves high spatial accuracy in simulations of large particle systems while maintaining computational feasibility. Using particle mean free paths which are small with respect to the characteristic length scale of the simulated system, we reproduce hydrodynamic behavior. To demonstrate that our code can retrieve continuum solutions, we perform a test-suite of classic hydrodynamic shock problems consisting of the Sod, the Noh, and the Sedov tests. We find that the results of our simulations which apply millions of test-particles match the analytic solutions well. In addition, we take advantage of the ability of kinetic codes to describe matter out of the continuum regime when applying large particle mean free paths. With that, we study and compare the evolution of shock waves in the hydrodynamic limit and in a regime which is not reachable by hydrodynamic codes.
Computational brittle fracture using smooth particle hydrodynamics
Mandell, D.A.; Wingate, C.A.; Schwalbe, L.A.
1996-10-01
We are developing statistically based, brittle-fracture models and are implementing them into hydrocodes that can be used for designing systems with components of ceramics, glass, and/or other brittle materials. Because of the advantages it has simulating fracture, we are working primarily with the smooth particle hydrodynamics code SPBM. We describe a new brittle fracture model that we have implemented into SPBM. To illustrate the code`s current capability, we have simulated a number of experiments. We discuss three of these simulations in this paper. The first experiment consists of a brittle steel sphere impacting a plate. The experimental sphere fragment patterns are compared to the calculations. The second experiment is a steel flyer plate in which the recovered steel target crack patterns are compared to the calculated crack patterns. We also briefly describe a simulation of a tungsten rod impacting a heavily confined alumina target, which has been recently reported on in detail.
Hydrodynamics of Turning Flocks.
Yang, Xingbo; Marchetti, M Cristina
2015-12-18
We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well-polarized flocks. The continuum equations controlled by only two dimensionless parameters, orientational inertia and alignment strength, are derived by coarse-graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields anisotropic spin waves that mediate the propagation of turning information throughout the flock. The coupling between spin-current density to the local vorticity field through a nonlinear friction gives rise to a hydrodynamic mode with angular-dependent propagation speed at long wavelengths. This mode becomes unstable as a result of the growth of bend and splay deformations augmented by the spin wave, signaling the transition to complex spatiotemporal patterns of continuously turning and swirling flocks. PMID:26722945
Hydrodynamics of Turning Flocks
NASA Astrophysics Data System (ADS)
Yang, Xingbo; Marchetti, M. Cristina
2015-12-01
We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well-polarized flocks. The continuum equations controlled by only two dimensionless parameters, orientational inertia and alignment strength, are derived by coarse-graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields anisotropic spin waves that mediate the propagation of turning information throughout the flock. The coupling between spin-current density to the local vorticity field through a nonlinear friction gives rise to a hydrodynamic mode with angular-dependent propagation speed at long wavelengths. This mode becomes unstable as a result of the growth of bend and splay deformations augmented by the spin wave, signaling the transition to complex spatiotemporal patterns of continuously turning and swirling flocks.
Fluctuations in relativistic causal hydrodynamics
NASA Astrophysics Data System (ADS)
Kumar, Avdhesh; Bhatt, Jitesh R.; Mishra, Ananta P.
2014-05-01
Formalism to calculate the hydrodynamic fluctuations by applying the Onsager theory to the relativistic Navier-Stokes equation is already known. In this work, we calculate hydrodynamic fluctuations within the framework of the second order hydrodynamics of Müller, Israel and Stewart and its generalization to the third order. We have also calculated the fluctuations for several other causal hydrodynamical equations. We show that the form for the Onsager-coefficients and form of the correlation functions remain the same as those obtained by the relativistic Navier-Stokes equation and do not depend on any specific model of hydrodynamics. Further we numerically investigate evolution of the correlation function using the one dimensional boost-invariant (Bjorken) flow. We compare the correlation functions obtained using the causal hydrodynamics with the correlation function for the relativistic Navier-Stokes equation. We find that the qualitative behavior of the correlation functions remains the same for all the models of the causal hydrodynamics.
Hydrodynamics of insect spermatozoa
NASA Astrophysics Data System (ADS)
Pak, On Shun; Lauga, Eric
2010-11-01
Microorganism motility plays important roles in many biological processes including reproduction. Many microorganisms propel themselves by propagating traveling waves along their flagella. Depending on the species, propagation of planar waves (e.g. Ceratium) and helical waves (e.g. Trichomonas) were observed in eukaryotic flagellar motion, and hydrodynamic models for both were proposed in the past. However, the motility of insect spermatozoa remains largely unexplored. An interesting morphological feature of such cells, first observed in Tenebrio molitor and Bacillus rossius, is the double helical deformation pattern along the flagella, which is characterized by the presence of two superimposed helical flagellar waves (one with a large amplitude and low frequency, and the other with a small amplitude and high frequency). Here we present the first hydrodynamic investigation of the locomotion of insect spermatozoa. The swimming kinematics, trajectories and hydrodynamic efficiency of the swimmer are computed based on the prescribed double helical deformation pattern. We then compare our theoretical predictions with experimental measurements, and explore the dependence of the swimming performance on the geometric and dynamical parameters.
Hydrodynamics of fossil fishes.
Fletcher, Thomas; Altringham, John; Peakall, Jeffrey; Wignall, Paul; Dorrell, Robert
2014-08-01
From their earliest origins, fishes have developed a suite of adaptations for locomotion in water, which determine performance and ultimately fitness. Even without data from behaviour, soft tissue and extant relatives, it is possible to infer a wealth of palaeobiological and palaeoecological information. As in extant species, aspects of gross morphology such as streamlining, fin position and tail type are optimized even in the earliest fishes, indicating similar life strategies have been present throughout their evolutionary history. As hydrodynamical studies become more sophisticated, increasingly complex fluid movement can be modelled, including vortex formation and boundary layer control. Drag-reducing riblets ornamenting the scales of fast-moving sharks have been subjected to particularly intense research, but this has not been extended to extinct forms. Riblets are a convergent adaptation seen in many Palaeozoic fishes, and probably served a similar hydrodynamic purpose. Conversely, structures which appear to increase skin friction may act as turbulisors, reducing overall drag while serving a protective function. Here, we examine the diverse adaptions that contribute to drag reduction in modern fishes and review the few attempts to elucidate the hydrodynamics of extinct forms. PMID:24943377
Hydrodynamics of fossil fishes
Fletcher, Thomas; Altringham, John; Peakall, Jeffrey; Wignall, Paul; Dorrell, Robert
2014-01-01
From their earliest origins, fishes have developed a suite of adaptations for locomotion in water, which determine performance and ultimately fitness. Even without data from behaviour, soft tissue and extant relatives, it is possible to infer a wealth of palaeobiological and palaeoecological information. As in extant species, aspects of gross morphology such as streamlining, fin position and tail type are optimized even in the earliest fishes, indicating similar life strategies have been present throughout their evolutionary history. As hydrodynamical studies become more sophisticated, increasingly complex fluid movement can be modelled, including vortex formation and boundary layer control. Drag-reducing riblets ornamenting the scales of fast-moving sharks have been subjected to particularly intense research, but this has not been extended to extinct forms. Riblets are a convergent adaptation seen in many Palaeozoic fishes, and probably served a similar hydrodynamic purpose. Conversely, structures which appear to increase skin friction may act as turbulisors, reducing overall drag while serving a protective function. Here, we examine the diverse adaptions that contribute to drag reduction in modern fishes and review the few attempts to elucidate the hydrodynamics of extinct forms. PMID:24943377
Ground deformation near Gada ‘Ale Volcano, Afar, observed by radar interferometry
NASA Astrophysics Data System (ADS)
Amelung, Falk; Oppenheimer, Clive; Segall, P.; Zebker, H.
2000-10-01
Radar interferometric measurements of ground-surface displacement using ERS data show a change in radar range, corresponding to up to 12 cm of subsidence near Gada ‘Ale volcano in northern Afar, Ethiopia, that occurred between June 1993 and May 1996. This is the area of lowest topography within the Danakil Depression (-126 m). Geodetic inverse modeling and geological evidence suggest a volcanic origin of the observed deformation; it was probably caused by a combined process of magma withdrawal from a larger reservoir and normal faulting. There is no evidence of subaerial eruption. This is the only identifiable deformation event during June 1993-October 1997 in the 80 km long Erta ‘Ale volcanic range, indicating surprising inactivity elsewhere in the range.
Combining Hydrodynamic and Evolution Calculations of Rotating Stars
NASA Astrophysics Data System (ADS)
Deupree, R. G.
1996-12-01
Rotation has two primary effects on stellar evolutionary models: the direct influence on the model structure produced by the rotational terms, and the indirect influence produced by rotational instabilities which redistribute angular momentum and composition inside the model. Using a two dimensional, fully implicit finite difference code, I can follow events on both evolutionary and hydrodynamic timescales, thus allowing the simulation of both effects. However, there are several issues concerning how to integrate the results from hydrodynamic runs into evolutionary runs that must be examined. The schemes I have devised for the integration of the hydrodynamic simulations into evolutionary calculations are outlined, and the positive and negative features summarized. The practical differences among the various schemes are small, and a successful marriage between hydrodynamic and evolution calculations is possible.
Coupling GSM/ALE with ES-FEM-T3 for fluid-deformable structure interactions
NASA Astrophysics Data System (ADS)
Wang, S.; Khoo, B. C.; Liu, G. R.; Xu, G. X.; Chen, L.
2014-11-01
In light of the effectiveness of the edge-based smoothed finite element method (ES-FEM-T3) and arbitrary Lagrangian-Eulerian gradient smoothing method (GSM/ALE) in, respectively, solving the pure solid and fluid flow problems using three-node triangular elements, they are coupled together in the present study to solve the more challenging fluid-deformable structure interaction (FSI) problems based on the weak coupling algorithm. Specifically, the fluid flow is tracked over the moving mesh with the well developed GSM/ALE and the transient response of the solid part is solved by the newly developed explicit ES-FEM-T3. The solutions from these two parts are “linked” together by the carefully formulated FSI coupling conditions on the FSI interface. Detailed procedures are summarized to illustrate the implementations of the GSM/ALE with ES-FEM-T3 in an FSI analysis. Three benchmarks are employed to validate the proposed coupled smoothed method in solving both transient and steady-state FSI problems. The mesh sensitivity analysis is further carried out showing that the results of an FSI system appear more sensitive to the change in the solid mesh as compared to the fluid mesh, thus suggesting a more refined mesh for the solid part. Another significant finding is that the present method can still produce reliable results even on the extremely distorted mesh near the FSI interface. The successful coupling GSM/ALE with ES-FEM-T3 for solving FSI problems serves as a good start for further implementing the family of smoothed methods in solving more complex cross-area problems.
PINTofALE : Package for the interactive analysis of line emission
NASA Astrophysics Data System (ADS)
Kashyap, V.; Drake, J. J.
2000-06-01
PINTofALE was developed to analyze spectroscopic data from coronal sources in the 1-1500 Å range. It is based on a modular set of IDL tools that interact with an atomic database and with observational data. The tools allow us to easily identify spectral lines, measure fluxes, and carry out more detailed modeling. The package has been extended to handle analysis of high-resolution X-ray spectra that will be obtained with the Chandra X-ray Observatory.
Integrated field, satellite and petrological observations of the November 2010 eruption of Erta Ale
NASA Astrophysics Data System (ADS)
Field, Lorraine; Barnie, Talfan; Blundy, Jon; Brooker, Richard A.; Keir, Derek; Lewi, Elias; Saunders, Kate
2012-12-01
Erta Ale volcano, Ethiopia, erupted in November 2010, emplacing new lava flows on the main crater floor, the first such eruption from the southern pit into the main crater since 1973, and the first eruption at this remote volcano in the modern satellite age. For many decades, Erta Ale has contained a persistently active lava lake which is ordinarily confined, several tens of metres below the level of the main crater, within the southern pit. We combine on-the-ground field observations with multispectral imaging from the SEVIRI satellite to reconstruct the entire eruptive episode beginning on 11 November and ending prior to 14 December 2010. A period of quiescence occurred between 14 and 19 November. The main eruptive activity developed between 19 and 22 November, finally subsiding to pre-eruptive levels between 8 and 15 December. The estimated total volume of lava erupted is ˜0.006 km3. The mineralogy of the 2010 lava is plagioclase + clinopyroxene + olivine. Geochemically, the lava is slightly more mafic than previously erupted lava lining the caldera floor, but lies within the range of historical lavas from Erta Ale. SIMS analysis of olivine-hosted melt inclusions shows the Erta Ale lavas to be relatively volatile-poor, with H2O contents ≤1,300 ppm and CO2 contents of ≤200 ppm. Incompatible trace and volatile element systematics of melt inclusions show, however, that the November 2010 lavas were volatile-saturated, and that degassing and crystallisation occurred concomitantly. Volatile saturation pressures are in the range 7-42 MPa, indicating shallow crystallisation. Calculated pre-eruption and melt inclusion entrapment temperatures from mineral/liquid thermometers are ˜1,150 °C, consistent with previously published field measurements.
Performance evaluation of a mobile satellite system modem using an ALE method
NASA Technical Reports Server (NTRS)
Ohsawa, Tomoki; Iwasaki, Motoya
1990-01-01
Experimental performance of a newly designed demodulation concept is presented. This concept applies an Adaptive Line Enhancer (ALE) to a carrier recovery circuit, which makes pull-in time significantly shorter in noisy and large carrier offset conditions. This new demodulation concept was actually developed as an INMARSAT standard-C modem, and was evaluated. On a performance evaluation, 50 symbol pull-in time is confirmed under 4 dB Eb/No condition.
Eraslan, A.H.; Abdel-Razek, M.M.
1985-05-01
RADONE is a computer code for predicting the transient, one-dimensional transport of radiouclides in receiving water bodies. The model formulation considers the one-dimensional (cross-sectionally averaged) conservation of mass and momentum equations and the two coupled, depth-averaged radionuclide transport equations for the water layer and the bottom sediment layer. The coupling conditions incorporate bottom deposition and resuspension effects. The computer code uses a discrete-element method that offers variable river cross-section spacing, accurate representation of cross-sectional geometry, and numerical accuracy. A sample application is provided for the problem of hypothetical accidental releases and actual routine releases of radionuclides to the Hudson River.
Mapping anhedonia-specific dysfunction in a transdiagnostic approach: an ALE meta-analysis.
Zhang, Bei; Lin, Pan; Shi, Huqing; Öngür, Dost; Auerbach, Randy P; Wang, Xiaosheng; Yao, Shuqiao; Wang, Xiang
2016-09-01
Anhedonia is a prominent symptom in neuropsychiatric disorders, most markedly in major depressive disorder (MDD) and schizophrenia (SZ). Emerging evidence indicates an overlap in the neural substrates of anhedonia between MDD and SZ, which supported a transdiagnostic approach. Therefore, we used activation likelihood estimation (ALE) meta-analysis of functional magnetic resonance imaging studies in MDD and SZ to examine the neural bases of three subdomains of anhedonia: consummatory anhedonia, anticipatory anhedonia and emotional processing. ALE analysis focused specifically on MDD or SZ was used later to dissociate specific anhedonia-related neurobiological impairments from potential disease general impairments. ALE results revealed that consummatory anhedonia was associated with decreased activation in ventral basal ganglia areas, while anticipatory anhedonia was associated with more substrates in frontal-striatal networks except the ventral striatum, which included the dorsal anterior cingulate, middle frontal gyrus and medial frontal gyrus. MDD and SZ patients showed similar neurobiological impairments in anticipatory and consummatory anhedonia, but differences in the emotional experience task, which may also involve affective/mood general processing. These results support that anhedonia is characterized by alterations in reward processing and relies on frontal-striatal brain circuitry. The transdiagnostic approach is a promising way to reveal the overall neurobiological framework that contributes to anhedonia and could help to improve targeted treatment strategies. PMID:26487590
Ecological perspectives of land use history: The Arid Lands Ecology (ALE) Reserve
Hinds, N R; Rogers, L E
1991-07-01
The objective of this study was to gather information on the land use history of the Arid Land Ecology (ALE) Reserve so that current ecological research could be placed within a historical perspective. The data were gathered in the early 1980s by interviewing former users of the land and from previously published research (where available). Interviews with former land users of the ALE Reserve in Benton County, Washington, revealed that major land uses from 1880 to 1940 were homesteading, grazing, oil/gas production, and road building. Land use practices associated with grazing and homesteading have left the greatest impact on the landscape. Disturbed sites where succession is characterized by non-native species, plots where sagebrush was railed away, and sheep trails are major indications today of past land uses. Recent estimates of annual bunchgrass production do ALE do not support the widespread belief that bunchgrass were more productive during the homesteading era, though the invasion of cheatgrass (Bromus tectorum), Jim Hill mustard (Sisymbrium altissium), and other European alien plant species has altered pre-settlement succession patterns. 15 refs., 6 figs., 1 tab.
Coordinate-based (ALE) meta-analysis of brain activation in patients with fibromyalgia.
Dehghan, Mahboobeh; Schmidt-Wilcke, Tobias; Pfleiderer, Bettina; Eickhoff, Simon B; Petzke, Frank; Harris, Richard E; Montoya, Pedro; Burgmer, Markus
2016-05-01
There are an increasing number of neuroimaging studies that allow a better understanding of symptoms, neural correlates and associated conditions of fibromyalgia. However, the results of these studies are difficult to compare, as they include a heterogeneous group of patients, use different stimulation paradigms, tasks, and the statistical evaluation of neuroimaging data shows high variability. Therefore, this meta-analytic approach aimed at evaluating potential alterations in neuronal brain activity or structure related to pain processing in fibromyalgia syndrome (FMS) patients, using quantitative coordinate-based "activation likelihood estimation" (ALE) meta-analysis. 37 FMS papers met the inclusion criteria for an ALE analysis (1,264 subjects, 274 activation foci). A pooled ALE analysis of different modalities of neuroimaging and additional analyses according functional and structural changes indicated differences between FMS patients and controls in the insula, amygdala, anterior/mid cingulate cortex, superior temporal gyrus, the primary and secondary somatosensory cortex, and lingual gyrus. Our analysis showed consistent results across FMS studies with potential abnormalities especially in pain-related brain areas. Given that similar alterations have already been demonstrated in patients with other chronic pain conditions and the lack of adequate control groups of chronic pain subjects in most FMS studies, it is not clear however, whether these findings are associated with chronic pain in general or are unique features of patients with FMS. Hum Brain Mapp 37:1749-1758, 2016. © 2016 Wiley Periodicals, Inc. PMID:26864780
NASA Astrophysics Data System (ADS)
Oppenheimer, Clive; Francis, Peter
1998-01-01
Erta 'Ale volcano, sited within the Afar Triangle of Ethiopia, is one of the least visited of perennially active, subaerial volcanoes. Satellite images recorded over the past thirty years illustrate the sustained activity of the volcano and complement the few brief periods of field observation. We consider that Erta 'Ale's lava lakes have probably persisted for ≥ 90 years, placing them among the longest-lived yet recorded. Despite sustained surface heat fluxes of 100-400 MW, the net surface growth rate integrated over the interval 1968-1995 was only ≈ 10 kg s -1. We speculate that this minimal lava discharge cannot be used to infer a low magma supply rate to the volcano, since heat losses from die lava lakes inhibit eruption by increasing magma density. This implies growth of the underlying crust by formation of dikes and sills containing cumulates, accommodated, and possibly promoted, by regional extension and intrusion loading. Open vent degassing and rift kinematics are clearly reflected in Erta 'Ale's morphology which is characterised by very gentle (< 3 °) slopes and a summit caldera.
Mapping anhedonia-specific dysfunction in a transdiagnostic approach: an ALE meta-analysis
Zhang, Bei; Lin, Pan; Shi, Huqing; Öngür, Dost; Auerbach, Randy P.; Wang, Xiaosheng; Yao, Shuqiao
2015-01-01
Anhedonia is a prominent symptom in neuropsychiatric disorders, most markedly in major depressive disorder (MDD) and schizophrenia (SZ). Emerging evidence indicates an overlap in the neural substrates of anhedonia between MDD and SZ, which supported a transdiagnostic approach. Therefore, we used activation likelihood estimation (ALE) meta-analysis of functional magnetic resonance imaging studies in MDD and SZ to examine the neural bases of three subdomains of anhedonia: consummatory anhedonia, anticipatory anhedonia and emotional processing. ALE analysis focused specifically on MDD or SZ was used later to dissociate specific anhedonia-related neurobiological impairments from potential disease general impairments. ALE results revealed that consummatory anhedonia was associated with decreased activation in ventral basal ganglia areas, while anticipatory anhedonia was associated with more substrates in frontal-striatal networks except the ventral striatum, which included the dorsal anterior cingulate, middle frontal gyrus and medial frontal gyrus. MDD and SZ patients showed similar neurobiological impairments in anticipatory and consummatory anhedonia, but differences in the emotional experience task, which may also involve affective/mood general processing. These results support that anhedonia is characterized by alterations in reward processing and relies on frontal-striatal brain circuitry. The transdiagnostic approach is a promising way to reveal the overall neurobiological framework that contributes to anhedonia and could help to improve targeted treatment strategies. PMID:26487590
Microbial diversity and metabolite composition of Belgian red-brown acidic ales.
Snauwaert, Isabel; Roels, Sanne P; Van Nieuwerburg, Filip; Van Landschoot, Anita; De Vuyst, Luc; Vandamme, Peter
2016-03-16
Belgian red-brown acidic ales are sour and alcoholic fermented beers, which are produced by mixed-culture fermentation and blending. The brews are aged in oak barrels for about two years, after which mature beer is blended with young, non-aged beer to obtain the end-products. The present study evaluated the microbial community diversity of Belgian red-brown acidic ales at the end of the maturation phase of three subsequent brews of three different breweries. The microbial diversity was compared with the metabolite composition of the brews at the end of the maturation phase. Therefore, mature brew samples were subjected to 454 pyrosequencing of the 16S rRNA gene (bacteria) and the internal transcribed spacer region (yeasts) and a broad range of metabolites was quantified. The most important microbial species present in the Belgian red-brown acidic ales investigated were Pediococcus damnosus, Dekkera bruxellensis, and Acetobacter pasteurianus. In addition, this culture-independent analysis revealed operational taxonomic units that were assigned to an unclassified fungal community member, Candida, and Lactobacillus. The main metabolites present in the brew samples were L-lactic acid, D-lactic acid, and ethanol, whereas acetic acid was produced in lower quantities. The most prevailing aroma compounds were ethyl acetate, isoamyl acetate, ethyl hexanoate, and ethyl octanoate, which might be of impact on the aroma of the end-products. PMID:26802571
Nonlinear hydrodynamics of cosmological sheets. 1: Numerical techniques and tests
NASA Technical Reports Server (NTRS)
Anninos, Wenbo Y.; Norman, Michael J.
1994-01-01
We present the numerical techniques and tests used to construct and validate a computer code designed to study the multidimensional nonlinear hydrodynamics of large-scale sheet structures in the universe, especially the fragmentation of such structures under various instabilities. This code is composed of two codes, the hydrodynamical code ZEUS-2D and a particle-mesh code. The ZEUS-2D code solves the hydrodynamical equations in two dimensions using explicit Eulerian finite-difference techniques, with modifications made to incorporate the expansion of the universe and the gas cooling due to Compton scattering, bremsstrahlung, and hydrogen and helium cooling. The particle-mesh code solves the equation of motion for the collisionless dark matter. The code uses two-dimensional Cartesian coordinates with a nonuniform grid in one direction to provide high resolution for the sheet structures. A series of one-dimensional and two-dimensional linear perturbation tests are presented which are designed to test the hydro solver and the Poisson solver with and without the expansion of the universe. We also present a radiative shock wave test which is designed to ensure the code's capability to handle radiative cooling properly. And finally a series of one-dimensional Zel'dovich pancake tests used to test the dark matter code and the hydro solver in the nonlinear regime are discussed and compared with the results of Bond et al. (1984) and Shapiro & Struck-Marcell (1985). Overall, the code is shown to produce accurate and stable results, which provide us a powerful tool to further our studies.
Hydrodynamic Simulations of Contact Binaries
NASA Astrophysics Data System (ADS)
Kadam, Kundan; Clayton, Geoffrey C.; Frank, Juhan; Marcello, Dominic; Motl, Patrick M.; Staff, Jan E.
2015-01-01
The motivation for our project is the peculiar case of the 'red nova" V1309 Sco which erupted in September 2008. The progenitor was, in fact, a contact binary system. We are developing a simulation of contact binaries, so that their formation, structural, and merger properties could be studied using hydrodynamics codes. The observed transient event was the disruption of the secondary star by the primary, and their subsequent merger into one star; hence to replicate this behavior, we need a core-envelope structure for both the stars. We achieve this using a combination of Self Consistant Field (SCF) technique and composite polytropes, also known as bipolytropes. So far we have been able to generate close binaries with various mass ratios. Another consequence of using bipolytropes is that according to theoretical calculations, the radius of a star should expand when the core mass fraction exceeds a critical value, resulting in interesting consequences in a binary system. We present some initial results of these simulations.
Vidgren, Virve; Kankainen, Matti; Londesborough, John; Ruohonen, Laura
2011-08-01
Agt1 is an interesting α-glucoside transporter for the brewing industry, as it efficiently transports maltotriose, a sugar often remaining partly unused during beer fermentation. It has been shown that on maltose the expression level of AGT1 is much higher in ale strains than in lager strains, and that glucose represses the expression, particularly in the ale strains. In the present study the regulatory elements of the AGT1 promoter of one ale and two lager strains were identified by computational methods. Promoter regions up to 1.9 kbp upstream of the AGT1 gene were sequenced from the three brewer's yeast strains and the laboratory yeast strain CEN.PK-1D. The promoter sequence of the laboratory strain was identical to the AGT1 promoter of strain S288c of the Saccharomyces Genome Database, whereas the promoter sequences of the industrial strains diverged markedly from the S288c strain. The AGT1 promoter regions of the ale and lager strains were for the most part identical to each other, except for one 22 bp deletion and two 94 and 95 bp insertions in the ale strain. Computational analyses of promoter elements revealed that the promoter sequences contained several Mig1- and MAL-activator binding sites, as was expected. However, some of the Mig1 and MAL-activator binding sites were located on the two insertions of the ale strain, and thus offered a plausible explanation for the different expression pattern of the AGT1 gene in the ale strains. Accordingly, functional analysis of A60 ale and A15 lager strain AGT1 promoters fused to GFP (encoding the green fluorescent protein) showed a significant difference in the ability of these two promoters to drive GFP expression. Under the control of the AGT1 promoter of the ale strain the emergence of GFP was strongly induced by maltose, whereas only a low level of GFP was detected with the construct carrying the AGT1 promoter of the lager strain. Thus, the extra MAL-activator binding element, present in the AGT1 promoter of
Impact modeling with Smooth Particle Hydrodynamics
Stellingwerf, R.F.; Wingate, C.A.
1993-07-01
Smooth Particle Hydrodynamics (SPH) can be used to model hypervelocity impact phenomena via the addition of a strength of materials treatment. SPH is the only technique that can model such problems efficiently due to the combination of 3-dimensional geometry, large translations of material, large deformations, and large void fractions for most problems of interest. This makes SPH an ideal candidate for modeling of asteroid impact, spacecraft shield modeling, and planetary accretion. In this paper we describe the derivation of the strength equations in SPH, show several basic code tests, and present several impact test cases with experimental comparisons.
NASA Astrophysics Data System (ADS)
Tóth, Gábor; Keppens, Rony
2012-07-01
The Versatile Advection Code (VAC) is a freely available general hydrodynamic and magnetohydrodynamic simulation software that works in 1, 2 or 3 dimensions on Cartesian and logically Cartesian grids. VAC runs on any Unix/Linux system with a Fortran 90 (or 77) compiler and Perl interpreter. VAC can run on parallel machines using either the Message Passing Interface (MPI) library or a High Performance Fortran (HPF) compiler.
RHALE: A 3-D MMALE code for unstructured grids
Peery, J.S.; Budge, K.G.; Wong, M.K.W.; Trucano, T.G.
1993-08-01
This paper describes RHALE, a multi-material arbitrary Lagrangian-Eulerian (MMALE) shock physics code. RHALE is the successor to CTH, Sandia`s 3-D Eulerian shock physics code, and will be capable of solving problems that CTH cannot adequately address. We discuss the Lagrangian solid mechanics capabilities of RHALE, which include arbitrary mesh connectivity, superior artificial viscosity, and improved material models. We discuss the MMALE algorithms that have been extended for arbitrary grids in both two- and three-dimensions. The MMALE addition to RHALE provides the accuracy of a Lagrangian code while allowing a calculation to proceed under very large material distortions. Coupling an arbitrary quadrilateral or hexahedral grid to the MMALE solution facilitates modeling of complex shapes with a greatly reduced number of computational cells. RHALE allows regions of a problem to be modeled with Lagrangian, Eulerian or ALE meshes. In addition, regions can switch from Lagrangian to ALE to Eulerian based on user input or mesh distortion. For ALE meshes, new node locations are determined with a variety of element based equipotential schemes. Element quantities are advected with donor, van Leer, or Super-B algorithms. Nodal quantities are advected with the second order SHALE or HIS algorithms. Material interfaces are determined with a modified Young`s high resolution interface tracker or the SLIC algorithm. RHALE has been used to model many problems of interest to the mechanics, hypervelocity impact, and shock physics communities. Results of a sampling of these problems are presented in this paper.
Hydrodynamic modes for granular gases.
Dufty, James W; Brey, J Javier
2003-09-01
The eigenfunctions and eigenvalues of the linearized Boltzmann equation for inelastic hard spheres (d=3) or disks (d=2) corresponding to d+2 hydrodynamic modes are calculated in the long wavelength limit for a granular gas. The transport coefficients are identified and found to agree with those from the Chapman-Enskog solution. The dominance of hydrodynamic modes at long times and long wavelengths is studied via an exactly solvable kinetic model. A collisional continuum is bounded away from the hydrodynamic spectrum, assuring a hydrodynamic description at long times. The bound is closely related to the power law decay of the velocity distribution in the reference homogeneous cooling state. PMID:14524742
Molecular Hydrodynamics from Memory Kernels.
Lesnicki, Dominika; Vuilleumier, Rodolphe; Carof, Antoine; Rotenberg, Benjamin
2016-04-01
The memory kernel for a tagged particle in a fluid, computed from molecular dynamics simulations, decays algebraically as t^{-3/2}. We show how the hydrodynamic Basset-Boussinesq force naturally emerges from this long-time tail and generalize the concept of hydrodynamic added mass. This mass term is negative in the present case of a molecular solute, which is at odds with incompressible hydrodynamics predictions. Lastly, we discuss the various contributions to the friction, the associated time scales, and the crossover between the molecular and hydrodynamic regimes upon increasing the solute radius. PMID:27104730
Load responsive hydrodynamic bearing
Kalsi, Manmohan S.; Somogyi, Dezso; Dietle, Lannie L.
2002-01-01
A load responsive hydrodynamic bearing is provided in the form of a thrust bearing or journal bearing for supporting, guiding and lubricating a relatively rotatable member to minimize wear thereof responsive to relative rotation under severe load. In the space between spaced relatively rotatable members and in the presence of a liquid or grease lubricant, one or more continuous ring shaped integral generally circular bearing bodies each define at least one dynamic surface and a plurality of support regions. Each of the support regions defines a static surface which is oriented in generally opposed relation with the dynamic surface for contact with one of the relatively rotatable members. A plurality of flexing regions are defined by the generally circular body of the bearing and are integral with and located between adjacent support regions. Each of the flexing regions has a first beam-like element being connected by an integral flexible hinge with one of the support regions and a second beam-like element having an integral flexible hinge connection with an adjacent support region. A least one local weakening geometry of the flexing region is located intermediate the first and second beam-like elements. In response to application of load from one of the relatively rotatable elements to the bearing, the beam-like elements and the local weakening geometry become flexed, causing the dynamic surface to deform and establish a hydrodynamic geometry for wedging lubricant into the dynamic interface.
Hydrodynamics of pronuclear migration
NASA Astrophysics Data System (ADS)
Nazockdast, Ehssan; Needleman, Daniel; Shelley, Michael
2014-11-01
Microtubule (MT) filaments play a key role in many processes involved in cell devision including spindle formation, chromosome segregation, and pronuclear positioning. We present a direct numerical technique to simulate MT dynamics in such processes. Our method includes hydrodynamically mediated interactions between MTs and other cytoskeletal objects, using singularity methods for Stokes flow. Long-ranged many-body hydrodynamic interactions are computed using a highly efficient and scalable fast multipole method, enabling the simulation of thousands of MTs. Our simulation method also takes into account the flexibility of MTs using Euler-Bernoulli beam theory as well as their dynamic instability. Using this technique, we simulate pronuclear migration in single-celled Caenorhabditis elegans embryos. Two different positioning mechanisms, based on the interactions of MTs with the motor proteins and the cell cortex, are explored: cytoplasmic pulling and cortical pushing. We find that although the pronuclear complex migrates towards the center of the cell in both models, the generated cytoplasmic flows are fundamentally different. This suggest that cytoplasmic flow visualization during pronuclear migration can be utilized to differentiate between the two mechanisms.
Hydrodynamic Studies of Turbulent AGN Tori
NASA Astrophysics Data System (ADS)
Schartmann, M.; Meisenheimer, K.; Klahr, H.; Camenzind, M.; Wolf, S.; Henning, Th.; Burkert, A.; Krause, M.
2011-01-01
Recently, the MID-infrared Interferometric instrument (MIDI) at the VLTI has shown that dust tori in the two nearby Seyfert galaxies NGC 1068 and the Circinus galaxy are geometrically thick and can be well described by a thin, warm central disk, surrounded by a colder and fluffy torus component. By carrying out hydrodynamical simulations with the help of the TRAMP code (Klahr et al. 1999), we follow the evolution of a young nuclear star cluster in terms of discrete mass-loss and energy injection from stellar processes. This naturally leads to a filamentary large scale torus component, where cold gas is able to flow radially inwards. The filaments join into a dense and very turbulent disk structure. In a post-processing step, we calculate spectral energy distributions and images with the 3D radiative transfer code MC3D Wolf (2003) and compare them to observations. Turbulence in the dense disk component is investigated in a separate project.
The moving mesh code SHADOWFAX
NASA Astrophysics Data System (ADS)
Vandenbroucke, B.; De Rijcke, S.
2016-07-01
We introduce the moving mesh code SHADOWFAX, which can be used to evolve a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. The code is written in C++ and its source code is made available to the scientific community under the GNU Affero General Public Licence. We outline the algorithm and the design of our implementation, and demonstrate its validity through the results of a set of basic test problems, which are also part of the public version. We also compare SHADOWFAX with a number of other publicly available codes using different hydrodynamical integration schemes, illustrating the advantages and disadvantages of the moving mesh technique.
Effect of Second-Order Hydrodynamics on a Floating Offshore Wind Turbine
Roald, L.; Jonkman, J.; Robertson, A.
2014-05-01
The design of offshore floating wind turbines uses design codes that can simulate the entire coupled system behavior. At the present, most codes include only first-order hydrodynamics, which induce forces and motions varying with the same frequency as the incident waves. Effects due to second- and higher-order hydrodynamics are often ignored in the offshore industry, because the forces induced typically are smaller than the first-order forces. In this report, first- and second-order hydrodynamic analysis used in the offshore oil and gas industry is applied to two different wind turbine concepts--a spar and a tension leg platform.
Hydrodynamics of shear coaxial liquid rocket injectors
NASA Astrophysics Data System (ADS)
Tsohas, John
Hydrodynamic instabilities within injector passages can couple to chamber acoustic modes and lead to unacceptable levels of combustion instabilities inside liquid rocket engines. The instability of vena-contracta regions and mixing between fuel and oxidizer can serve as a fundamental source of unsteadiness produced by the injector, even in the absence of upstream or downstream pressure perturbations. This natural or "unforced" response can provide valuable information regarding frequencies where the element could conceivably couple to chamber modes. In particular, during throttled conditions the changes in the injector response may lead to an alignment of the injector and chamber modes. For these reasons, the basic unforced response of the injector element is of particular interest when developing a new engine. The Loci/Chem code was used to perform single-element, 2-D unsteady CFD computations on the Hydrogen/Oxygen Multi-Element Experiment (HOMEE) injector which was hot-fire tested at Purdue University. The Loci/Chem code was used to evaluate the effects of O/F ratio, LOX post thickness, recess length and LOX tube length on the hydrodynamics of shear co-axial rocket injectors.
Hydrodynamics, resurgence, and transasymptotics
NASA Astrophysics Data System (ADS)
Başar, Gökçe; Dunne, Gerald V.
2015-12-01
The second order hydrodynamical description of a homogeneous conformal plasma that undergoes a boost-invariant expansion is given by a single nonlinear ordinary differential equation, whose resurgent asymptotic properties we study, developing further the recent work of Heller and Spalinski [Phys. Rev. Lett. 115, 072501 (2015)]. Resurgence clearly identifies the nonhydrodynamic modes that are exponentially suppressed at late times, analogous to the quasinormal modes in gravitational language, organizing these modes in terms of a trans-series expansion. These modes are analogs of instantons in semiclassical expansions, where the damping rate plays the role of the instanton action. We show that this system displays the generic features of resurgence, with explicit quantitative relations between the fluctuations about different orders of these nonhydrodynamic modes. The imaginary part of the trans-series parameter is identified with the Stokes constant, and the real part with the freedom associated with initial conditions.
Hydrodynamics of Peristaltic Propulsion
NASA Astrophysics Data System (ADS)
Athanassiadis, Athanasios; Hart, Douglas
2014-11-01
A curious class of animals called salps live in marine environments and self-propel by ejecting vortex rings much like jellyfish and squid. However, unlike other jetting creatures that siphon and eject water from one side of their body, salps produce vortex rings by pumping water through siphons on opposite ends of their hollow cylindrical bodies. In the simplest cases, it seems like some species of salp can successfully move by contracting just two siphons connected by an elastic body. When thought of as a chain of timed contractions, salp propulsion is reminiscent of peristaltic pumping applied to marine locomotion. Inspired by salps, we investigate the hydrodynamics of peristaltic propulsion, focusing on the scaling relationships that determine flow rate, thrust production, and energy usage in a model system. We discuss possible actuation methods for a model peristaltic vehicle, considering both the material and geometrical requirements for such a system.
Hydrodynamics of Turning Flocks
NASA Astrophysics Data System (ADS)
Yang, Xingbo; Marchetti, M. Cristina
2015-03-01
We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well polarized flocks. The continuum equations are derived by coarse graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields spin waves that mediate the propagation of turning information throughout the flock. When the inertia is large, we find a novel instability that signals the transition to complex spatio-temporal patterns of continuously turning and swirling flocks. This work was supported by the NSF Awards DMR-1305184 and DGE-1068780 at Syracuse University and NSF Award PHY11-25915 and the Gordon and Betty Moore Foundation Grant No. 2919 at the KITP at the University of California, Santa Barbara.
Hydrodynamic effects on coalescence.
Dimiduk, Thomas G.; Bourdon, Christopher Jay; Grillet, Anne Mary; Baer, Thomas A.; de Boer, Maarten Pieter; Loewenberg, Michael; Gorby, Allen D.; Brooks, Carlton, F.
2006-10-01
The goal of this project was to design, build and test novel diagnostics to probe the effect of hydrodynamic forces on coalescence dynamics. Our investigation focused on how a drop coalesces onto a flat surface which is analogous to two drops coalescing, but more amenable to precise experimental measurements. We designed and built a flow cell to create an axisymmetric compression flow which brings a drop onto a flat surface. A computer-controlled system manipulates the flow to steer the drop and maintain a symmetric flow. Particle image velocimetry was performed to confirm that the control system was delivering a well conditioned flow. To examine the dynamics of the coalescence, we implemented an interferometry capability to measure the drainage of the thin film between the drop and the surface during the coalescence process. A semi-automated analysis routine was developed which converts the dynamic interferogram series into drop shape evolution data.
Synchronization and hydrodynamic interactions
NASA Astrophysics Data System (ADS)
Powers, Thomas; Qian, Bian; Breuer, Kenneth
2008-03-01
Cilia and flagella commonly beat in a coordinated manner. Examples include the flagella that Volvox colonies use to move, the cilia that sweep foreign particles up out of the human airway, and the nodal cilia that set up the flow that determines the left-right axis in developing vertebrate embryos. In this talk we present an experimental study of how hydrodynamic interactions can lead to coordination in a simple idealized system: two nearby paddles driven with fixed torques in a highly viscous fluid. The paddles attain a synchronized state in which they rotate together with a phase difference of 90 degrees. We discuss how synchronization depends on system parameters and present numerical calculations using the method of regularized stokeslets.
Prototype Mixed Finite Element Hydrodynamics Capability in ARES
Rieben, R N
2008-07-10
This document describes work on a prototype Mixed Finite Element Method (MFEM) hydrodynamics algorithm in the ARES code, and its application to a set of standard test problems. This work is motivated by the need for improvements to the algorithms used in the Lagrange hydrodynamics step to make them more robust. We begin by identifying the outstanding issues with traditional numerical hydrodynamics algorithms followed by a description of the proposed method and how it may address several of these longstanding issues. We give a theoretical overview of the proposed MFEM algorithm as well as a summary of the coding additions and modifications that were made to add this capability to the ARES code. We present results obtained with the new method on a set of canonical hydrodynamics test problems and demonstrate significant improvement in comparison to results obtained with traditional methods. We conclude with a summary of the issues still at hand and motivate the need for continued research to develop the proposed method into maturity.
Hydrodynamics of sediment threshold
NASA Astrophysics Data System (ADS)
Ali, Sk Zeeshan; Dey, Subhasish
2016-07-01
A novel hydrodynamic model for the threshold of cohesionless sediment particle motion under a steady unidirectional streamflow is presented. The hydrodynamic forces (drag and lift) acting on a solitary sediment particle resting over a closely packed bed formed by the identical sediment particles are the primary motivating forces. The drag force comprises of the form drag and form induced drag. The lift force includes the Saffman lift, Magnus lift, centrifugal lift, and turbulent lift. The points of action of the force system are appropriately obtained, for the first time, from the basics of micro-mechanics. The sediment threshold is envisioned as the rolling mode, which is the plausible mode to initiate a particle motion on the bed. The moment balance of the force system on the solitary particle about the pivoting point of rolling yields the governing equation. The conditions of sediment threshold under the hydraulically smooth, transitional, and rough flow regimes are examined. The effects of velocity fluctuations are addressed by applying the statistical theory of turbulence. This study shows that for a hindrance coefficient of 0.3, the threshold curve (threshold Shields parameter versus shear Reynolds number) has an excellent agreement with the experimental data of uniform sediments. However, most of the experimental data are bounded by the upper and lower limiting threshold curves, corresponding to the hindrance coefficients of 0.2 and 0.4, respectively. The threshold curve of this study is compared with those of previous researchers. The present model also agrees satisfactorily with the experimental data of nonuniform sediments.
A Secret Decoder Ring for Volcanic Tremor: Method and Application to Erta 'Ale, Ethiopia
NASA Astrophysics Data System (ADS)
Jones, J. P.; Carniel, R.; Malone, S. D.
2009-12-01
A new method of analyzing volcanic tremor is presented, which uses properties of undecimated wavelet packet transforms to filter, decompose, and recover signals from continuous multichannel data. The method preserves many standard properties that are used to characterize tremor, such as wavefield polarization and seismic energy. In this way, we can better understand the (potentially many) seismic sources that combine to form continuous volcanic tremor, and we can specifically address the problem of what causes changing tremor spectral content. Using example data from two experiments at Erta 'Ale, Ethiopia, this method suggests that continuous volcanic tremor generally has multiple, simultaneously active seismic sources, not all of which are persistent. Our analysis suggests that continuous tremor was simultaneously generated at Erta 'Ale by magma flow in a conduit, degassing at a system of fumaroles, gas bubbles coalescing in the shallow, active lava lake, and degassing in a crater that formerly held a lava lake. Evidence for these diverse seismic sources can be seen in both the 2002 and 2003 data. Energy-based location of recovered signals from 2003 strongly supports this interpretation. The spectral transitions seen at Erta 'Ale in 2002 are resolved using this method, and result from secondary signals introduced during rapid convection. The signal which we interpret as being generated by magma flow in a conduit did not change between the two convective regimes. Thus, the recovered signals from the 2002 data argue strongly that changes in the rate of lava lake convection (and corresponding spectral changes) were driven entirely by shallow processes in the lava lake, rather than changing properties of the magma supply. This example demonstrates that using wavelet-based methods to understand the sources of continuous volcanic tremor can prove useful in understanding volcanic behavior, as well as detecting signals that relate to unrest.
NASA Astrophysics Data System (ADS)
Feistauer, Miloslav; Kučera, Václav; Prokopová, Jaroslav; Horáček, Jaromír
2010-09-01
The aim of this work is the simulation of viscous compressible flows in human vocal folds during phonation. The computational domain is a bounded subset of IR2, whose geometry mimics the shape of the human larynx. During phonation, parts of the solid impermeable walls are moving in a prescribed manner, thus simulating the opening and closing of the vocal chords. As the governing equations we take the compressible Navier-Stokes equations in ALE form. Space semidiscretization is carried out by the discontinuous Galerkin method combined with a linearized semi-implicit approach. Numerical experiments are performed with the resulting scheme.
Afar unrest: the 2008 Alu eruption in the Erta `Ale volcanic system (Ethiopia)
NASA Astrophysics Data System (ADS)
Pagli, C.; Wright, T. J.; Ayele, A.; Barnie, T.
2009-04-01
The Alu volcano is located within the Erta ‘Ale volcanic system in northern Afar (Ethiopia), about 30 km to the north of the Erta ‘Ale volcano whose summit caldera hosts a lava lake. Aster, Hotspot and S02 emissions images formed on 3rd November, 2008 showed that a fissural eruption was occurring east of the Alu volcano. Here we present an InSAR study of the area, using data from four tracks of the Envisat satellite both in descending ad ascending orbits, also including data in Wide Swath acquisition mode. The interferograms span different time periods allowing us to separate pre-, co- and post-eruptive deformation. In particular, an acquisition made on 3rd November at 19:20 (the day of the eruption) is used to observe deformation over two different co-eruptive periods. The co-eruptive interferograms show two closely-spaced but distinct concentric deformation patterns, both consistent with deflation, on the Alu volcano and on another unnamed volcano 3 km south of Alu. Most deformation in both volcanoes occurred during the first part of 3rd November (until 19:20) but significant deflation, up to ~ 45 cm, is also observed in the following interferogram from 3rd November at 19:20 to 8th December. Interestingly, no significant pre-eruptive deformation was observed in the area, nor any deformation was observed at the Erta ‘Ale lava lake prior to, during or after the Alu eruption. Preliminary modelling results, using two deflating Mogi sources, suggest that the two shallow magma chambers at ~1-1.5 km depth deflated during the eruption, with a volume change of the sources of ~-0.01 km3. Lack of pre-eruptive deformation suggests that the erupted magma was sitting at shallow depth under the Alu volcanoes. The lava lake in the nearby Erta 'Ale volcano also indicates that shallow magma reservoirs are a common feature in the area. We plan to model the observed deformations using different models, i.e. sill, penny shaped crack and ellipsoidal source and to compare our
Migration trachéale d'une canule de trachéotomie: complication exceptionnelle
Chouikh, Chakib; El Moqaddem, Amine; Benmakhlouf, Anas; Naanaa, Saad; El Koraichi, Alae; El Kettani, Salma; Jahidi, Ali
2014-01-01
La trachéotomie est un geste chirurgical de survie largement pratiqué dans les services des urgences et de réanimation. En fonction de l'indication de sa réalisation, elle peut être transitoire ou définitive. Dans ce dernier cas le port d'une canule de trachéotomie de manière prolongée peut exposer à certaines complications qui peuvent s'avérer graves. Nous présentons un cas très rare d'un enfant présentant un syndrome de Guillain Barré, trachéotomisé depuis 4 ans suite à une sténose trachéale par intubation prolongée et portant une canule de trachéotomie métallique de type KRISHABER qui s'est présenté aux urgences dans un tableau de détresse respiratoire suite à la migration trachéale de sa canule. La trachéotomie est l'ouverture à la peau de la trachée cervicale, et à la mise d'une canule qui a pour but de permettre la respiration en court-circuitant les voies aériennes supérieures. De réalisation simple et codifiée le plus souvent, elle présente des risques de complications post opératoires notamment tardives. Les plus décrites sont les granulomes, les sténoses trachéales, les infections, et les fistules. La migration trachéale de la canule de trachéotomie reste exceptionnelle. Elle résulte d'un mauvais entretien qui fragilise la canule et doit être prise en charge en urgence. La trachéotomie définitive nécessite une surveillance régulière, un entretien et des soins de canules rigoureux pour éviter la survenue de complications qui peuvent être graves. Chez l'enfant, l'utilisation de canules souples en PVC ou en silicone doit être préférée aux canules métalliques. PMID:25368730
Hydrodynamic Simulations of Giant Impacts
NASA Astrophysics Data System (ADS)
Reinhardt, Christian; Stadel, Joachim
2013-07-01
We studied the basic numerical aspects of giant impacts using Smoothed Particles Hydrodynamics (SPH), which has been used in most of the prior studies conducted in this area (e.g., Benz, Canup). Our main goal was to modify the massive parallel, multi-stepping code GASOLINE widely used in cosmological simulations so that it can properly simulate the behavior of condensed materials such as granite or iron using the Tillotson equation of state. GASOLINE has been used to simulate hundreds of millions of particles for ideal gas physics so that using several millions of particles in condensed material simulations seems possible. In order to focus our attention of the numerical aspects of the problem we neglected the internal structure of the protoplanets and modelled them as homogenous (isothermal) granite spheres. For the energy balance we only considered PdV work and shock heating of the material during the impact (neglected cooling of the material). Starting at a low resolution of 2048 particles for the target and the impactor we run several simulations for different impact parameters and impact velocities and successfully reproduced the main features of the pioneering work of Benz from 1986. The impact sends a shock wave through both bodies heating the target and disrupting the remaining impactor. As in prior simulations material is ejected from the collision. How much, and whether it leaves the system or survives in an orbit for a longer time, depends on the initial conditions but also on resolution. Increasing the resolution (to 1.2x10⁶ particles) results in both a much clearer shock wave and deformation of the bodies during the impact and a more compact and detailed "arm" like structure of the ejected material. Currently we are investigating some numerical issues we encountered and are implementing differentiated models, making one step closer to more realistic protoplanets in such giant impact simulations.
Multi-scale Godunov-type method for cell-centered discrete Lagrangian hydrodynamics
NASA Astrophysics Data System (ADS)
Maire, Pierre-Henri; Nkonga, Boniface
2009-02-01
This work presents a multi-dimensional cell-centered unstructured finite volume scheme for the solution of multimaterial compressible fluid flows written in the Lagrangian formalism. This formulation is considered in the Arbitrary-Lagrangian-Eulerian (ALE) framework with the constraint that the mesh velocity and the fluid velocity coincide. The link between the vertex velocity and the fluid motion is obtained by a formulation of the momentum conservation on a class of multi-scale encased volumes around mesh vertices. The vertex velocity is derived with a nodal Riemann solver constructed in such a way that the mesh motion and the face fluxes are compatible. Finally, the resulting scheme conserves both momentum and total energy and, it satisfies a semi-discrete entropy inequality. The numerical results obtained for some classical 2D and 3D hydrodynamic test cases show the robustness and the accuracy of the proposed algorithm.
Hydrodynamic Elastic Magneto Plastic
Energy Science and Technology Software Center (ESTSC)
1985-02-01
The HEMP code solves the conservation equations of two-dimensional elastic-plastic flow, in plane x-y coordinates or in cylindrical symmetry around the x-axis. Provisions for calculation of fixed boundaries, free surfaces, pistons, and boundary slide planes have been included, along with other special conditions.
Recent development of hydrodynamic modeling
NASA Astrophysics Data System (ADS)
Hirano, Tetsufumi
2014-09-01
In this talk, I give an overview of recent development in hydrodynamic modeling of high-energy nuclear collisions. First, I briefly discuss about current situation of hydrodynamic modeling by showing results from the integrated dynamical approach in which Monte-Carlo calculation of initial conditions, quark-gluon fluid dynamics and hadronic cascading are combined. In particular, I focus on rescattering effects of strange hadrons on final observables. Next I highlight three topics in recent development in hydrodynamic modeling. These include (1) medium response to jet propagation in di-jet asymmetric events, (2) causal hydrodynamic fluctuation and its application to Bjorken expansion and (3) chiral magnetic wave from anomalous hydrodynamic simulations. (1) Recent CMS data suggest the existence of QGP response to propagation of jets. To investigate this phenomenon, we solve hydrodynamic equations with source term which exhibits deposition of energy and momentum from jets. We find a large number of low momentum particles are emitted at large angle from jet axis. This gives a novel interpretation of the CMS data. (2) It has been claimed that a matter created even in p-p/p-A collisions may behave like a fluid. However, fluctuation effects would be important in such a small system. We formulate relativistic fluctuating hydrodynamics and apply it to Bjorken expansion. We found the final multiplicity fluctuates around the mean value even if initial condition is fixed. This effect is relatively important in peripheral A-A collisions and p-p/p-A collisions. (3) Anomalous transport of the quark-gluon fluid is predicted when extremely high magnetic field is applied. We investigate this possibility by solving anomalous hydrodynamic equations. We found the difference of the elliptic flow parameter between positive and negative particles appears due to the chiral magnetic wave. Finally, I provide some personal perspective of hydrodynamic modeling of high energy nuclear collisions
Constraining relativistic viscous hydrodynamical evolution
Martinez, Mauricio; Strickland, Michael
2009-04-15
We show that by requiring positivity of the longitudinal pressure it is possible to constrain the initial conditions one can use in second-order viscous hydrodynamical simulations of ultrarelativistic heavy-ion collisions. We demonstrate this explicitly for (0+1)-dimensional viscous hydrodynamics and discuss how the constraint extends to higher dimensions. Additionally, we present an analytic approximation to the solution of (0+1)-dimensional second-order viscous hydrodynamical evolution equations appropriate to describe the evolution of matter in an ultrarelativistic heavy-ion collision.
Hydrodynamic body shape analysis and their impact on swimming performance.
Li, Tian-Zeng; Zhan, Jie-Min
2015-01-01
This study presents the hydrodynamic characteristics of different adult male swimmer's body shape using computational fluid dynamics method. This simulation strategy is carried out by CFD fluent code with solving the 3D incompressible Navier-Stokes equations using the RNG k-ε turbulence closure. The water free surface is captured by the volume of fluid (VOF) method. A set of full body models, which is based on the anthropometrical characteristics of the most common male swimmers, is created by Computer Aided Industrial Design (CAID) software, Rhinoceros. The analysis of CFD results revealed that swimmer's body shape has a noticeable effect on the hydrodynamics performances. This explains why male swimmer with an inverted triangle body shape has good hydrodynamic characteristics for competitive swimming. PMID:26898107
ALE3D Simulation of Heating and Violence in a Fast Cookoff Experiment with LX-10
McClelland, M A; Maienschein, J L; Howard, W M; Nichols, A L; deHaven, M R; Strand, O T
2006-06-26
We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.
ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment with LX-10
McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R
2006-11-22
We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.
ALE Meta-Analysis of Schizophrenics Performing the N-Back Task
NASA Astrophysics Data System (ADS)
Harrell, Zachary
2010-10-01
MRI/fMRI has already proven itself as a valuable tool in the diagnosis and treatment of many illnesses of the brain, including cognitive problems. By exploiting the differences in magnetic susceptibility between oxygenated and deoxygenated hemoglobin, fMRI can measure blood flow in various regions of interest within the brain. This can determine the level of brain activity in relation to motor or cognitive functions and provide a metric for tissue damage or illness symptoms. Structural imaging techniques have shown lesions or deficiencies in tissue volumes in schizophrenics corresponding to areas primarily in the frontal and temporal lobes. These areas are currently known to be involved in working memory and attention, which many schizophrenics have trouble with. The ALE (Activation Likelihood Estimation) Meta-Analysis is able to statistically determine the significance of brain area activations based on the post-hoc combination of multiple studies. This process is useful for giving a general model of brain function in relation to a particular task designed to engage the affected areas (such as working memory for the n-back task). The advantages of the ALE Meta-Analysis include elimination of single subject anomalies, elimination of false/extremely weak activations, and verification of function/location hypotheses.
The Atmospheric Lifetime Experiment and the Global Atmospheric Gas Experiment (ALE/GAGE)
NASA Technical Reports Server (NTRS)
Rasmussen, R. A.; Khalil, M. Aslam K.
1995-01-01
The ALE/GAGE project was designed to determine the global atmospheric lifetimes of the chlorofluorocarbons CCl3F and CCl2F2 (F-11 and F-12), which had been identified as the main gases that cause stratospheric ozone depletion. The experimental procedures also provided the concentrations of CH3CCl3, CCl4 and N2O. The extended role of the project was to evaluate the mass balances of these gases as well. Methylchloroform (CH3CCl3) serves as a tracer of average atmospheric OH concentrations and hence the oxidizing capacity of the atmosphere. Nitrous oxide (N2O) is a potent greenhouse gas and can also deplete the ozone layer. Measurements of these gases were taken with optimized instruments in the field at a frequency of about 1 sample/hr. Toward the end of the present project methane measurements were added to the program. The final report deals with the research of the Oregon Graduate Institute (OGI) as part of the ALE/GAGE program between 4/1/1988 and 1/31/1991. The report defines the scope of the OGI project, the approach, and the results.
Voxel-Based Morphometry ALE meta-analysis of Bipolar Disorder
NASA Astrophysics Data System (ADS)
Magana, Omar; Laird, Robert
2012-03-01
A meta-analysis was performed independently to view the changes in gray matter (GM) on patients with Bipolar disorder (BP). The meta-analysis was conducted on a Talairach Space using GingerALE to determine the voxels and their permutation. In order to achieve the data acquisition, published experiments and similar research studies were uploaded onto the online Voxel-Based Morphometry database (VBM). By doing so, coordinates of activation locations were extracted from Bipolar disorder related journals utilizing Sleuth. Once the coordinates of given experiments were selected and imported to GingerALE, a Gaussian was performed on all foci points to create the concentration points of GM on BP patients. The results included volume reductions and variations of GM between Normal Healthy controls and Patients with Bipolar disorder. A significant amount of GM clusters were obtained in Normal Healthy controls over BP patients on the right precentral gyrus, right anterior cingulate, and the left inferior frontal gyrus. In future research, more published journals could be uploaded onto the database and another VBM meta-analysis could be performed including more activation coordinates or a variation of age groups.
Validation of Air-Backed Underwater Explosion Experiments with ALE3D
Leininger, L D
2005-02-04
This paper summarizes an exercise carried out to validate the process of implementing LLNL's ALE3D to predict the permanent deformation and rupture of an air-backed steel plate subjected to underwater shock. Experiments were performed in a shock tank at the Naval Science and Technology Laboratory in Visakhapatnam India, and the results are documented in reference. A consistent set of air-backed plates is subjected to shocks from increasing weights of explosives ranging from 10g-80g. At 40g and above, rupture is recorded in the experiment and, without fracture mechanics implemented in ALE3D, only the cases of 10g, 20g, and 30g are presented here. This methodology applies the Jones-Wilkins-Lee (JWL) Equation of State (EOS) to predict the pressure of the expanding detonation products, the Gruneisein EOS for water under highly dynamic compressible flow - both on 1-point integrated 3-d continuum elements. The steel plates apply a bilinear elastic-plastic response with failure and are simulated with 3-point integrated shell elements. The failure for this exercise is based on effective (or equivalent) plastic strain.
Shallow axial magma chamber at the slow-spreading Erta Ale Ridge
NASA Astrophysics Data System (ADS)
Pagli, Carolina; Wright, Tim J.; Ebinger, Cynthia J.; Yun, Sang-Ho; Cann, Johnson R.; Barnie, Talfan; Ayele, Atalay
2012-04-01
The existence of elongated, shallow magma chambers beneath the axes of fast-spreading mid-ocean ridges is well established. Yet, at slow-spreading ridges such shallow and elongated magma chambers are much less evident. Simple thermal models therefore predict that spreading velocity and magma supply may provide the main controls on magma-chamber depth and morphology. Here we use interferometric synthetic aperture radar data to investigate the dynamics of the magma chamber beneath the slow-spreading Erta Ale segment of the Ethiopian Rift. We show that an eruption from Alu-Dalafilla in November 2008 was sourced from a shallow, 1km deep, elongated magma chamber that is divided into two segments. The eruption was probably triggered by a small influx of magma into the northern segment. Both segments of the magma chamber fed the main eruption through a connecting dyke and both segments have been refilling rapidly since the eruption ended. Our results support the presence of independent sources of magma supply to segmented chambers located along the axes of spreading centres. However, the existence of a shallow, elongated axial chamber at Erta Ale indicates that spreading rate and magma supply may not be the only controls on magma-chamber characteristics.
NASA Astrophysics Data System (ADS)
Takahashi, R.; Matsuo, M.; Ono, M.; Harii, K.; Chudo, H.; Okayasu, S.; Ieda, J.; Takahashi, S.; Maekawa, S.; Saitoh, E.
2016-01-01
Magnetohydrodynamic generation is the conversion of fluid kinetic energy into electricity. Such conversion, which has been applied to various types of electric power generation, is driven by the Lorentz force acting on charged particles and thus a magnetic field is necessary. On the other hand, recent studies of spintronics have revealed the similarity between the function of a magnetic field and that of spin-orbit interactions in condensed matter. This suggests the existence of an undiscovered route to realize the conversion of fluid dynamics into electricity without using magnetic fields. Here we show electric voltage generation from fluid dynamics free from magnetic fields; we excited liquid-metal flows in a narrow channel and observed longitudinal voltage generation in the liquid. This voltage has nothing to do with electrification or thermoelectric effects, but turned out to follow a universal scaling rule based on a spin-mediated scenario. The result shows that the observed voltage is caused by spin-current generation from a fluid motion: spin hydrodynamic generation. The observed phenomenon allows us to make mechanical spin-current and electric generators, opening a door to fluid spintronics.
Relativistic hydrodynamics on graphic cards
NASA Astrophysics Data System (ADS)
Gerhard, Jochen; Lindenstruth, Volker; Bleicher, Marcus
2013-02-01
We show how to accelerate relativistic hydrodynamics simulations using graphic cards (graphic processing units, GPUs). These improvements are of highest relevance e.g. to the field of high-energetic nucleus-nucleus collisions at RHIC and LHC where (ideal and dissipative) relativistic hydrodynamics is used to calculate the evolution of hot and dense QCD matter. The results reported here are based on the Sharp And Smooth Transport Algorithm (SHASTA), which is employed in many hydrodynamical models and hybrid simulation packages, e.g. the Ultrarelativistic Quantum Molecular Dynamics model (UrQMD). We have redesigned the SHASTA using the OpenCL computing framework to work on accelerators like graphic processing units (GPUs) as well as on multi-core processors. With the redesign of the algorithm the hydrodynamic calculations have been accelerated by a factor 160 allowing for event-by-event calculations and better statistics in hybrid calculations.
Reciprocal relations in dissipationless hydrodynamics
Melnikovsky, L. A.
2014-12-15
Hidden symmetry in dissipationless terms of arbitrary hydrodynamics equations is recognized. We demonstrate that all fluxes are generated by a single function and derive conventional Euler equations using the proposed formalism.