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Sample records for aliivibrio salmonicida strain

  1. The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

    PubMed Central

    Hjerde, Erik; Lorentzen, Marit Sjo; Holden, Matthew TG; Seeger, Kathy; Paulsen, Steinar; Bason, Nathalie; Churcher, Carol; Harris, David; Norbertczak, Halina; Quail, Michael A; Sanders, Suzanne; Thurston, Scott; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R

    2008-01-01

    Background The fish pathogen Aliivibrio salmonicida is the causative agent of cold-water vibriosis in marine aquaculture. The Gram-negative bacterium causes tissue degradation, hemolysis and sepsis in vivo. Results In total, 4 286 protein coding sequences were identified, and the 4.6 Mb genome of A. salmonicida has a six partite architecture with two chromosomes and four plasmids. Sequence analysis revealed a highly fragmented genome structure caused by the insertion of an extensive number of insertion sequence (IS) elements. The IS elements can be related to important evolutionary events such as gene acquisition, gene loss and chromosomal rearrangements. New A. salmonicida functional capabilities that may have been aquired through horizontal DNA transfer include genes involved in iron-acquisition, and protein secretion and play potential roles in pathogenicity. On the other hand, the degeneration of 370 genes and consequent loss of specific functions suggest that A. salmonicida has a reduced metabolic and physiological capacity in comparison to related Vibrionaceae species. Conclusion Most prominent is the loss of several genes involved in the utilisation of the polysaccharide chitin. In particular, the disruption of three extracellular chitinases responsible for enzymatic breakdown of chitin makes A. salmonicida unable to grow on the polymer form of chitin. These, and other losses could restrict the variety of carrier organisms A. salmonicida can attach to, and associate with. Gene acquisition and gene loss may be related to the emergence of A. salmonicida as a fish pathogen. PMID:19099551

  2. IS elements in Aliivibrio salmonicida LFI1238: occurrence, variability and impact on adaptability.

    PubMed

    Kashulin, Alexander; Sørum, Henning; Hjerde, Erik; Willassen, Nils P

    2015-01-01

    Insertion sequence (IS) elements are short, self-replicating DNA sequences that are capable of efficiently spreading over the host genome. Possessing varied integration specificity IS elements are capable of the irreversible inactivation of genes, which diversifies the pool of intact genetic determinants in host populations. In the current study, we performed a complex analysis of IS elements (Vsa IS) in the previously sequenced genome of Aliivibrio salmonicida LFI1238 and proposed a model of the spread of the Vsa IS elements over the genome of this microorganism. Along with the prediction of the integration sites for Vsa IS elements, the current study provides an overview of the properties of A. salmonicida IS elements, as well as information regarding their occurrence in different bacterial classes. An analysis of individual alleles of the IS elements has allowed us to depict a history of the accumulation of mutations and to describe distinctive microevolution lines for actively transposing Vsa IS elements in the genome of A. salmonicida LFI1238. Our results demonstrate the high importance of the dead end microevolution of actively transposing Vsa IS elements for the inactivation of genes in A. salmonicida LFI1238. PMID:25447025

  3. Infection of sea lamprey with an unusual strain of Aeromonas salmonicida

    USGS Publications Warehouse

    Diamanka, Arfang; Loch, Thomas P.; Cipriano, Rocco C.; Winters, Andrew D.; Faisal, Mohamed

    2014-01-01

    The invasion of the Laurentian Great Lakes by the fish-parasitic sea lamprey has led to catastrophic consequences, including the potential introduction of fish pathogens. Aeromonas salmonicida is a bacterial fish pathogen that causes devastating losses worldwide. Currently, there are five accepted subspecies of Aeromonas salmonicida: A. salmonicida subsp. salmonicida, masoucida, smithia, achromogenes, and pectinolytica. We discuss the discovery of an isolate of A. salmonicida that is pathogenic to rainbow trout (Oncorhynchus mykiss) and exhibits unique phenotypic and molecular characteristics. We examined 181 adult sea lamprey (Petromyzon marinus) from the Humber River (Lake Ontario watershed) and 162 adult sea lamprey from Duffins Creek (Lake Ontario watershed) during the spring seasons of 2005–11. Among those, 4/343 (1.2%) sea lamprey were culture positive for A. salmonicida, whereby biochemical and molecular studies identified three of the isolates as A. salmonicida subsp. salmonicida. The remaining isolate (As-SL1) recovered from Humber River sea lamprey was phenotypically more similar to A. salmonicida subsp. salmonicida than to the four other A. salmonicida subspecies. However, unlike A. salmonicida subsp. salmonicida, As-SL1 was sucrose positive, produced an acid-over-acid reaction on triple-sugar iron medium and did not amplify with A. salmonicida subsp. salmonicida specific primers. Phylogenetic analysis based on partial stretches of the 16S rRNA and DNA gyrase subunit B genes further confirmed that the As-SL1 isolate was not A. salmonicida subsp. masoucida, smithia, achromogenes, or pectinolytica. Based on our analyses, the As-SL1 isolate is either an unusual strain of A. salmonicida subsp. salmonicida or a novel A. salmonicida subspecies. The four A. salmonicida isolates that were recovered from sea lamprey were pathogenic to rainbow trout in experimental challenge studies. Our study also underscores the potential role of sea lamprey in the ecology of

  4. Functional Genomics of the Aeromonas salmonicida Lipopolysaccharide O-Antigen and A-Layer from Typical and Atypical Strains

    PubMed Central

    Merino, Susana; de Mendoza, Elena; Canals, Rocío; Tomás, Juan M.

    2015-01-01

    The A. salmonicida A450 LPS O-antigen, encoded by the wbsalmo gene cluster, is exported through an ABC-2 transporter-dependent pathway. It represents the first example of an O-antigen LPS polysaccharide with three different monosaccharides in their repeating unit assembled by this pathway. Until now, only repeating units with one or two different monosaccharides have been described. Functional genomic analysis of this wbsalmo region is mostly in agreement with the LPS O-antigen structure of acetylated l-rhamnose (Rha), d-glucose (Glc), and 2-amino-2-deoxy-d-mannose (ManN). Between genes of the wbsalmo we found the genes responsible for the biosynthesis and assembly of the S-layer (named A-layer in these strains). Through comparative genomic analysis and in-frame deletions of some of the genes, we concluded that all the A. salmonicida typical and atypical strains, other than A. salmonicida subsp. pectinolytica strains, shared the same wbsalmo and presence of A-layer. A. salmonicida subsp. pectinolytica strains lack wbsalmo and A-layer, two major virulence factors, and this could be the reason they are the only ones not found as fish pathogens. PMID:26082990

  5. AsaGEI2b: a new variant of a genomic island identified in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland.

    PubMed

    Emond-Rheault, Jean-Guillaume; Vincent, Antony T; Trudel, Mélanie V; Frey, Joachim; Frenette, Michel; Charette, Steve J

    2015-07-01

    Aeromonas salmonicida subsp. salmonicida is the causal agent of furunculosis in salmonids. We recently identified a group of genomic islands (AsaGEI) in this bacterium. AsaGEI2a, one of these genomic islands, has almost exclusively been identified in isolates from North America. To date, Aeromonas salmonicida subsp. salmonicida JF3224, a strain isolated from a wild brown trout (Salmo trutta) caught in Switzerland, was the only European isolate that appeared to bear AsaGEI2a. We analyzed the genome of JF3224 and showed that the genomic island in JF3224 is a new variant of AsaGEI, which we have called AsaGEI2b. While AsaGEI2b shares the same integrase gene and insertion site as AsaGEI2a, it is very different in terms of many other features. Additional genomic investigations combined with PCR genotyping revealed that JF3224 is sensitive to growth at 25°C, leading to insertion sequence-dependent rearrangement of the locus on the pAsa5 plasmid that encodes a type three secretion system, which is essential for the virulence of the bacterium. The analysis of the JF3224 genome confirmed that AsaGEIs are accurate indicators of the geographic origins of A. salmonicida subsp. salmonicida isolates and is another example of the susceptibility of the pAsa5 plasmid to DNA rearrangements. PMID:26048417

  6. Clustering subspecies of Aeromonas salmonicida using IS630 typing

    PubMed Central

    2013-01-01

    Background The insertion element IS630 found in Aeromonas salmonicida belongs to the IS630-Tc1-mariner superfamily of transposons. It is present in multiple copies and represents approximately half of the IS present in the genome of A. salmonicida subsp. salmonicida A449. Results By using High Copy Number IS630 Restriction Fragment Length Polymorphism (HCN-IS630-RFLP), strains of various subspecies of Aeromonas salmonicida showed conserved or clustering patterns, thus allowing their differentiation from each other. Fingerprints of A. salmonicida subsp. salmonicida showed the highest homogeneity while ‘atypical’ A. salmonicida strains were more heterogeneous. IS630 typing also differentiated A. salmonicida from other Aeromonas species. The copy number of IS630 in Aeromonas salmonicida ranges from 8 to 35 and is much lower in other Aeromonas species. Conclusions HCN-IS630-RFLP is a powerful tool for subtyping of A. salmonicida. The high stability of IS630 insertions in A. salmonicida subsp. salmonicida indicates that it might have played a role in pathoadaptation of A. salmonicida which has reached an optimal configuration in the highly virulent and specific fish pathogen A. salmonicida subsp. salmonicida. PMID:23406017

  7. Serological comparison of selected isolates of Aeromonas salmonicida ssp. Salmonicida

    USGS Publications Warehouse

    Hahnel, G.B.; Gould, R.W.; Boatman, E.S.

    1983-01-01

    Eight isolates of Acronionus salmonicida ssp. salmonicida were collected during furunculosis epizootics in North American Pacific coast states and provinces. Both virulent and avirulent forms of each isolate, confirmed by challenge and electron microscopy, were examined. Serological comparisons by cross-absorption agglutination tests revealed no serological differences between isolates. Using the double diffusion precipitin test, a single band was observed when antigen from a sonicated virulent strain was reacted with antiserum against a sonicated, virulent strain absorbed with homologous, avirulent strain. The presence of the single band was eliminated by excess sonication.

  8. Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins.

    PubMed

    Emond-Rheault, Jean-Guillaume; Vincent, Antony T; Trudel, Mélanie V; Brochu, Francis; Boyle, Brian; Tanaka, Katherine H; Attéré, Sabrina A; Jubinville, Éric; Loch, Thomas P; Winters, Andrew D; Faisal, Mohamed; Frenette, Michel; Derome, Nicolas; Charette, Steve J

    2015-01-30

    Aeromonas salmonicida subsp. salmonicida is a fish pathogen. Analysis of its genomic characteristics is required to determine the worldwide distribution of the various populations of this bacterium. Genomic alignments between the 01-B526 pathogenic strain and the A449 reference strain have revealed a 51-kb chromosomal insertion in 01-B526. This insertion (AsaGEI1a) has been identified as a new genomic island (GEI) bearing prophage genes. PCR assays were used to detect this GEI in a collection of 139 A. salmonicida subsp. salmonicida isolates. Three forms of this GEI (AsaGEI1a, AsaGEI1b, AsaGEI2a) are now known based on this analysis and the sequencing of the genomes of seven additional isolates. A new prophage (prophage 3) associated with AsaGEI2a was also discovered. Each GEI appeared to be strongly associated with a specific geographic region. AsaGEI1a and AsaGEI2a were exclusively found in North American isolates, except for one European isolate bearing AsaGEI2a. The majority of the isolates bearing AsaGEI1b or no GEI were from Europe. Prophage 3 has also a particular geographic distribution and was found only in North American isolates. We demonstrated that A. salmonicida subsp. salmonicida possesses unsuspected elements of genomic heterogeneity that could be used as indicators to determine the geographic origins of isolates of this bacterium. PMID:25480167

  9. Detection of Aeromonas salmonicida by reverse transcription-multiplex polymerase chain reaction.

    PubMed

    Rattanachaikunsopon, Pongsak; Phumkhachorn, Parichat

    2012-01-01

    Aeromonas salmonicida is one of the major fish pathogens causing economically devastating losses in aquaculture. A. salmonicida subsp. salmonicida is a typical A. salmonicida causing furunculosis, while the other subspecies are atypical strains causing ulcer diseases. PCR-based methods of detecting A. salmonicida suffer from the drawback that they do not distinguish living (pathogenic) from dead cells. In this study, a method of detecting A. salmonicida was developed based on reverse transcription-multiplex PCR (RT-MPCR) using two sets of primers, SV1/SV2 and SF1/SF2, specific to the vapA gene and the fstB gene of A. salmonicida respectively. This method was found to detect A. salmonicida specifically with detection limits of 10 CFU in pure culture and 30 CFU in the presence of tissue debris. It was also found distinguish not only between viable and nonviable cells but also between typical and atypical strains of A. salmonicida. Using RT-MPCR, two DNA fragments, of 542 and 1,258 bp, were amplified from RNA of typical A. salmonicida, whereas only one DNA fragment, of 542 bp, was amplified from the RNA of the atypical ones. The proposed assay was also used successfully to detect A. salmonicida in artificially infected rainbow trout (Oncorhyncus mykiss). PMID:22484927

  10. Biological control of Aeromonas salmonicida subsp. salmonicida infection in rainbow trout (Oncorhynchus mykiss) using Aeromonas phage PAS-1.

    PubMed

    Kim, J H; Choresca, C H; Shin, S P; Han, J E; Jun, J W; Park, S C

    2015-02-01

    The potential control efficacy of Aeromonas phage PAS-1 was evaluated against Aeromonas salmonicida subsp. salmonicida infection in rainbow trout (Oncorhynchus mykiss) model in this study. The phage was co-cultured with the virulent A. salmonicida subsp. salmonicida strain AS05 that possesses the type III secretion system (TTSS) ascV gene, and efficient bacteriolytic activity was observed against the bacteria. The administration of PAS-1 in rainbow trout demonstrated that the phage was cleared from the fish within 200 h post-administration, and a temporal neutralizing activity against the phage was detected in the sera of phage-administrated fish. The administration of PAS-1 (multiplicity of infection: 10 000) in A. salmonicida subsp. salmonicida infected rainbow trout model showed notable protective effects, with increased survival rates and mean times to death. These results demonstrated that Aeromonas phage PAS-1 could be considered as an alternative biological control agent against A. salmonicida subsp. salmonicida infections in rainbow trout culture. PMID:23594036

  11. Triclosan Resistance in a Bacterial Fish Pathogen, Aeromonas salmonicida subsp. salmonicida, is Mediated by an Enoyl Reductase, FabV.

    PubMed

    Khan, Raees; Lee, Myung Hwan; Joo, Hae-Jin; Jung, Yong-Hoon; Ahmad, Shabir; Choi, Jin-Hee; Lee, Seon-Woo

    2015-04-01

    Triclosan, the widely used biocide, specifically targets enoyl-acyl carrier protein reductase (ENR) in the bacterial fatty acid synthesis system. Although the fish pathogen Aeromonas salmonicida subsp. salmonicida exhibits triclosan resistance, the nature of this resistance has not been elucidated. Here, we aimed to characterize the triclosan resistance of A. salmonicida subsp. salmonicida causing furunculosis. The fosmid library of triclosan-resistant A. salmonicida subsp. salmonicida was constructed to select a fosmid clone showing triclosan resistance. With the fosmid clone showing triclosan resistance, a subsequent secondary library search resulted in the selection of subclone pTSR-1. DNA sequence analysis of pTSR-1 revealed the presence of a chromosomal-borne fabV-encoding ENR homolog. The ENR of A. salmonicida (FabVas) exhibited significant homology with previously known FabV, including the catalytic domain YX(8)K. fabVas introduction into E. coli dramatically increased its resistance to triclosan. Heterologous expression of FabVas might functionally replace the triclosan-sensitive FabI in vivo to confer E. coli with triclosan resistance. A genome-wide search for fabVas homologs revealed the presence of an additional fabV gene (fabVas2) paralog in A. salmonicida strains and the fabVas orthologs from other gram-negative fish pathogens. Both of the potential FabV ENRs expressed similarly with or without triclosan supplement. This is the first report about the presence of two potential FabV ENRs in a single pathogenic bacterium. Our result suggests that triclosan-resistant ENRs are widely distributed in various bacteria in nature, and the wide use of this biocide can spread these triclosan-tolerant ENRs among fish pathogens and other pathogenic bacteria. PMID:25370725

  12. Quantitative detection of Aeromonas salmonicida in fish tissue by real-time PCR using self-quenched, fluorogenic primers.

    PubMed

    Balcázar, José Luis; Vendrell, Daniel; de Blas, Ignacio; Ruiz-Zarzuela, Imanol; Gironés, Olivia; Múzquiz, José Luis

    2007-03-01

    In this study a real-time PCR assay using self-quenched primers labelled with a single fluorophore for the detection of Aeromonas salmonicida was developed. Probe specificity was confirmed by amplification of 16 A. salmonicida strain templates and by the lack of a PCR product with 26 non-A. salmonicida strains. With a pure culture of A. salmonicida, the assay was linear over a range of 0.5 pg to 50 ng and was able to detect 16 c.f.u. per reaction. A similar sensitivity was observed in DNA extracted from a mixture of A. salmonicida and fish tissue. Results using artificially inoculated tissues and diseased fish from outbreaks indicated that the assay can provide sensitive species-specific detection and quantification of A. salmonicida in fish tissue. PMID:17314361

  13. The Aeromonas salmonicida Lipopolysaccharide Core from Different Subspecies: The Unusual subsp. pectinolytica.

    PubMed

    Merino, Susana; Tomás, Juan M

    2016-01-01

    Initial hydridization tests using Aeromonas salmonicida typical and atypical strains showed the possibility of different lipopolysaccharide (LPS) outer cores among these strains. By chemical structural analysis, LPS-core SDS-PAGE gel migration, and functional and comparative genomics we demonstrated that typical A. salmonicida (subsp. salmonicida) strains and atypical subsp. masoucida and probably smithia strains showed the same LPS outer core. A. salmonicida subsp. achromogenes strains show a similar LPS outer core but lack one of the most external residues (a galactose linked α1-6 to heptose), not affecting the O-antigen LPS linkage. A. salmonicida subsp. pectinolytica strains show a rather changed LPS outer core, which is identical to the LPS outer core from the majority of the A. hydrophila strains studied by genomic analyses. The LPS inner core in all tested A. salmonicida strains, typical and atypical, is well-conserved. Furthermore, the LPS inner core seems to be conserved in all the Aeromonas (psychrophilic or mesophilic) strains studied by genomic analyses. PMID:26904002

  14. The Aeromonas salmonicida Lipopolysaccharide Core from Different Subspecies: The Unusual subsp. pectinolytica

    PubMed Central

    Merino, Susana; Tomás, Juan M.

    2016-01-01

    Initial hydridization tests using Aeromonas salmonicida typical and atypical strains showed the possibility of different lipopolysaccharide (LPS) outer cores among these strains. By chemical structural analysis, LPS-core SDS-PAGE gel migration, and functional and comparative genomics we demonstrated that typical A. salmonicida (subsp. salmonicida) strains and atypical subsp. masoucida and probably smithia strains showed the same LPS outer core. A. salmonicida subsp. achromogenes strains show a similar LPS outer core but lack one of the most external residues (a galactose linked α1-6 to heptose), not affecting the O-antigen LPS linkage. A. salmonicida subsp. pectinolytica strains show a rather changed LPS outer core, which is identical to the LPS outer core from the majority of the A. hydrophila strains studied by genomic analyses. The LPS inner core in all tested A. salmonicida strains, typical and atypical, is well-conserved. Furthermore, the LPS inner core seems to be conserved in all the Aeromonas (psychrophilic or mesophilic) strains studied by genomic analyses. PMID:26904002

  15. Polyphasic characterization of Aeromonas salmonicida isolates recovered from salmonid and non-salmonid fish

    USGS Publications Warehouse

    Diamanka, A.; Loch, T.P.; Cipriano, R.C.; Faisal, M.

    2013-01-01

    Michigan's fisheries rely primarily upon the hatchery propagation of salmonid fish for release in public waters. One limitation on the success of these efforts is the presence of bacterial pathogens, including Aeromonas salmonicida, the causative agent of furunculosis. This study was undertaken to determine the prevalence of A. salmonicida in Michigan fish, as well as to determine whether biochemical or gene sequence variability exists among Michigan isolates. A total of 2202 wild, feral and hatchery-propagated fish from Michigan were examined for the presence of A. salmonicida. The examined fish included Chinook salmon, Oncorhynchus tshawytscha (Walbaum), coho salmon, O. kisutcha (Walbaum), steelhead trout, O. mykiss (Walbaum), Atlantic salmon, Salmo salar L., brook trout, Salvelinus fontinalis (Mitchill), and yellow perch, Perca flavescens (Mitchill). Among these, 234 fish yielded a brown pigment-producing bacterium that was presumptively identified as A. salmonicida. Further phenotypic and phylogenetic analyses identified representative isolates as Aeromonas salmonicida subsp. salmonicida and revealed some genetic and biochemical variability. Logistic regression analyses showed that infection prevalence varied according to fish species/strain, year and gender, whereby Chinook salmon and females had the highest infection prevalence. Moreover, this pathogen was found in six fish species from eight sites, demonstrating its widespread nature within Michigan.

  16. Design of a toxicity biosensor based on Aliivibrio fischeri entrapped in a disposable card.

    PubMed

    Jouanneau, Sulivan; Durand-Thouand, Marie-José; Thouand, Gérald

    2016-03-01

    The degradation of the marine environment is a subject of concern for the European authorities primarily because of its contamination by hydrocarbons. The traditional methods (ISO 11348 standard) of general toxicity assessment are unsuitable in a context of in situ monitoring, such as seaports or bathing zones. Consequently, to address this issue, bacterial biosensors appear to be pertinent tools. This article presents the design of an innovative bioluminescent biosensor dedicated to in situ toxicity monitoring. This biosensor is based on the entrapment of the wild marine bioluminescent bacterial strain Aliivibrio fischeri ATCC® 49387™ in an agarose matrix within a disposable card. A pre-study was needed to select the most biological parameters. In particular, the regenerating medium's composition and the hydrogel concentration needed for the bacterial entrapment (mechanical resistance) were optimized. Based on these data, the ability of the bacterial reporter to assess the sample toxicity was demonstrated using naphthalene as a chemical model. The biosensor's results show a lower sensitivity to naphthalene (EC50 = 95 mg/L) compared with the results obtained using the reference method (EC50 = 43 mg/L). With this architecture, the biosensor is an interesting compromise among low maintenance, ease of use, appropriate sensitivity, relatively low cost and the ability to control online toxicity. PMID:26162438

  17. Insertion sequence AS5 (ISAS5) is involved in the genomic plasticity of Aeromonas salmonicida

    PubMed Central

    Trudel, Mélanie V.; Tanaka, Katherine H.; Filion, Geneviève; Daher, Rana K.; Frenette, Michel; Charette, Steve J.

    2013-01-01

    The genome of the fish pathogen Aeromonas salmonicida subsp salmonicida harbors a large number of insertion sequences (ISs), many of which are located on plasmids. In the present study, we analyzed the small plasmid profile of A. salmonicida strains to identify evidences of plasmid alterations. Ten out of 78 strains analyzed displayed an unconventional plasmid profile. However the HER1104 strain was unique, having a positive PCR signal for pAsal1 plasmid despite not carrying this plasmid. Instead, HER1104 was bearing a plasmid at higher molecular weight than pAsal1. We characterized this new larger plasmid, which we called pAsal1B since it is a derivative of pAsal1 containing one more complete IS (ISAS5) than the parental plasmid. An additional 96 bp relic of ISAS5 was also present in pAsal1B. These results propose that ISAS5 is another active mobile genetic element in A. salmonicida subsp salmonicida and provided further proof of the genomic plasticity of this bacterium. PMID:23956951

  18. Surface phenotypic characteristics and virulence of Spanish isolates of Aeromonas salmonicida after passage through fish.

    PubMed Central

    Fernández, A I; Pérez, M J; Rodríguez, L A; Nieto, T P

    1995-01-01

    Eleven strains of Aeromonas salmonicida were passaged twice by intraperitoneal injection through rainbow trout and reisolated from the kidney of moribund fish. The surface characteristics and virulence of the strains changed following passage through fish. None of the in vitro tests used could effectively predict the in vivo virulence. PMID:7646039

  19. Denaturing gradient gel electrophoresis for nonlethal detection of Aeromonas salmonicida in salmonid mucus and its potential for other bacterial fish pathogens.

    PubMed

    Quinn, Robert A; Stevenson, Roselynn M W

    2012-05-01

    Denaturing gradient gel electrophoresis (DGGE) of 16S rDNA was used to nonlethally detect Aeromonas salmonicida and other bacteria in salmonid skin mucus. Mucus samples from wild spawning coho salmon (Oncorhynchus kisutch) with endemic A. salmonicida and from cultured lake trout (Salvelinus namaycush) were tested by PCR-DGGE and were compared with mucus culture on Coomassie brilliant blue agar and internal organ culture. PCR-DGGE gave a highly reproducible 4-band pattern for 9 strains of typical A. salmonicida, which was different from other Aeromonas spp. Aeromonas salmonicida presence in mucus was evident as a band that comigrated with the bottom band of the A. salmonicida 4-band pattern and was verified by sequencing. PCR-DGGE found 36 of 52 coho salmon positive for A. salmonicida, compared with 31 positive by mucus culture and 16 by organ culture. Numerous other bacteria were detected in salmonid mucus, including Pseudomonas spp., Shewanella putrefaciens, Aeromonas hydrophila and other aeromonads. However, Yersinia ruckeri was not detected in mucus from 27 lake trout, but 1 fish had a sorbitol-positive Y. ruckeri isolated from organ culture. Yersinia ruckeri seeded into a mucus sample suggested that PCR-DGGE detection of this bacterium from mucus was possible. PCR-DGGE allows nonlethal detection of A. salmonicida in mucus and differentiation of some Aeromonas spp. and has the potential to allow simultaneous detection of other pathogens present in fish mucus. PMID:22506865

  20. Physical and functional S-layer reconstitution in Aeromonas salmonicida.

    PubMed Central

    Garduño, R A; Phipps, B M; Kay, W W

    1995-01-01

    The various functions attributed to the S-layer of Aeromonas salmonicida have been previously identified by their conspicuous absence in S-layer-defective mutants. As a different approach to establish the multifunctional nature of this S-layer, we established methods for reconstitution of the S-layer of A. salmonicida. Then we investigated the functional competence of the reconstituted S-layer. S-layers were reconstituted in different systems: on inert membranes or immobilized lipopolysaccharide (LPS) from purified S-layer protein (A-protein) or on viable cells from either A-protein or preassembled S-layer sheets. In the absence of divalent cations and LPS, purified A-protein in solution spontaneously assembled into tetrameric oligomers and, upon concentration by ultrafiltration, into macroscopic, semicrystalline sheets formed by oligomers loosely organized in a tetragonal arrangement. In the presence of Ca2+, purified A-protein assembled into normal tetragonal arrays of interlocked subunits. A-protein bound with high affinity (Kd, 1.55 x 10(-7) M) and specificity to high-molecular-weight LPS from A. salmonicida but not to the LPSs of several other bacterial species. In vivo, A-protein could be reconstituted only on A. salmonicida cells which contained LPS, and Ca2+ affected both a regular tetragonal organization of the reattached A-protein and an enhanced reattachment of the A-protein to the cell surface. The reconstitution of preformed S-layer sheets (produced by an S-layer-secreting mutant) to an S-layer-negative mutant occurred consistently and efficiently when the two mutant strains were cocultured on calcium-replete solid media. Reattached A-protein (exposed on the surface of S-layer-negative mutants) was able to bind porphyrins and an S-layer-specific phage but largely lacked regular organization, as judged by its inability to bind immunoglobulins. Reattached S-layer sheets were regularly organized and imparted the properties of porphyrin binding

  1. Aeromonas salmonicida subsp. salmonicida in the light of its type-three secretion system

    PubMed Central

    Vanden Bergh, Philippe; Frey, Joachim

    2014-01-01

    Aeromonas salmonicida subsp. salmonicida is an important pathogen in salmonid aquaculture and is responsible for the typical furunculosis. The type-three secretion system (T3SS) is a major virulence system. In this work, we review structure and function of this highly sophisticated nanosyringe in A. salmonicida. Based on the literature as well as personal experimental observations, we document the genetic (re)organization, expression regulation, anatomy, putative functional origin and roles in the infectious process of this T3SS. We propose a model of pathogenesis where A. salmonicida induces a temporary immunosuppression state in fish in order to acquire free access to host tissues. Finally, we highlight putative important therapeutic and vaccine strategies to prevent furunculosis of salmonid fish. PMID:24119189

  2. Aeromonas salmonicida subsp. salmonicida in the light of its type-three secretion system.

    PubMed

    Vanden Bergh, Philippe; Frey, Joachim

    2014-09-01

    Aeromonas salmonicida subsp. salmonicida is an important pathogen in salmonid aquaculture and is responsible for the typical furunculosis. The type-three secretion system (T3SS) is a major virulence system. In this work, we review structure and function of this highly sophisticated nanosyringe in A. salmonicida. Based on the literature as well as personal experimental observations, we document the genetic (re)organization, expression regulation, anatomy, putative functional origin and roles in the infectious process of this T3SS. We propose a model of pathogenesis where A. salmonicida induces a temporary immunosuppression state in fish in order to acquire free access to host tissues. Finally, we highlight putative important therapeutic and vaccine strategies to prevent furunculosis of salmonid fish. PMID:24119189

  3. Molecular characterization of tetracycline- and quinolone-resistant Aeromonas salmonicida isolated in Korea

    PubMed Central

    Kim, Ji Hyung; Hwang, Sun Young; Son, Jee Soo; Han, Jee Eun; Jun, Jin Woo; Shin, Sang Phil; Choresca, Casiano; Choi, Yun Jaie; Park, Yong Ho

    2011-01-01

    The antibiotic resistance of 16 Aeromonas (A.) salmonicida strains isolated from diseased fish and environmental samples in Korea from 2006 to 2009 were investigated in this study. Tetracycline or quinolone resistance was observed in eight and 16 of the isolates, respectively, based on the measured minimal inhibitory concentrations. Among the tetracycline-resistant strains, seven of the isolates harbored tetA gene and one isolate harbored tetE gene. Additionally, quinolone-resistance determining regions (QRDRs) consisting of the gyrA and parC genes were amplified and sequenced. Among the quinolone-resistant A. salmonicida strains, 15 harbored point mutations in the gyrA codon 83 which were responsible for the corresponding amino acid substitutions of Ser83→Arg83 or Ser83→Asn83. We detected no point mutations in other QRDRs, such as gyrA codons 87 and 92, and parC codons 80 and 84. Genetic similarity was assessed via pulsed-field gel electrophoresis, and the results indicated high clonality among the Korean antibiotic-resistant strains of A. salmonicida. PMID:21368562

  4. Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance.

    PubMed

    Vincent, Antony T; Tanaka, Katherine H; Trudel, Melanie V; Frenette, Michel; Derome, Nicolas; Charette, Steve J

    2015-02-01

    The bacterium Aeromonas salmonicida is the etiological agent of furunculosis, a widespread fish disease causing important economic losses to the fish farming industry. Antibiotic treatments in fish farms may be challenging given the existence of multidrug-resistant isolates of this bacterium. Here, we report the draft genome sequences of the 2004-05MF26 and 2009-144K3 isolates, which harbor plasmids conferring antibiotic resistance. Both isolates also carry the large plasmid pAsa5, which is known to encode a type three secretion system (TTSS) and the pAsal1 plasmid which has the aopP gene producing a TTSS effector. These two isolates are good representatives of the plasmid diversity in A. salmonicida subsp. salmonicida. PMID:25724776

  5. The improved PCR of the fstA (ferric siderophore receptor) gene differentiates the fish pathogen Aeromonas salmonicida from other Aeromonas species.

    PubMed

    Beaz-Hidalgo, Roxana; Latif-Eugenín, Fadua; Figueras, María José

    2013-10-25

    The members of the genus Aeromonas are autochthonous of aquatic ecosystems and several species have been associated to septicaemia, ulcerative and haemorrhagic diseases in fish, causing significant mortality in both wild and farmed, freshwater and marine fish species. The species Aeromonas salmonicida is generally recognized as the most important fish pathogen responsible for epidemic outbreaks of furunculosis in salmonids, also being able to produce infections in other cultured fish such as turbot, halibut, sea bream or goldfish. New species, i.e. Aeromonas aquariorum, Aeromonas tecta and Aeromonas piscicola, have recently been discovered and isolated from diseased fish. The species A. piscicola and Aeromonas bestiarum are practically impossible to differentiate phenotypically and genetically (when using the 16S rRNA gene) from each other and from A. salmonicida. In the present study, two previously described PCR protocols, based on the fstA and gyrB genes, for the specific detection of A. salmonicida were re-evaluated with the type strains of all Aeromonas species and with a set of A. piscicola and A. bestiarum strains. Contrary to what had been published previously it was demonstrated that the gyrB-PCR is not specific for A. salmonicida because of cross-reactions with other Aeromonas species. However, in agreement with previous results, A. salmonicida was detected on the basis of the fstA-PCR, for which an improved protocol was proposed. PMID:23890674

  6. Differential partition of virulent Aeromonas salmonicida and attenuated derivatives possessing specific cell surface alterations in polymer aqueous-phase systems

    NASA Technical Reports Server (NTRS)

    Van Alstine, J. M.; Trust, T. J.; Brooks, D. E.

    1986-01-01

    Two-polymer aqueous-phase systems in which partitioning of biological matter between the phases occurs according to surface properties such as hydrophobicity, charge, and lipid composition are used to compare the surface properties of strains of the fish pathogen Aeromonas salmonicida. The differential ability of strains to produce a surface protein array crucial to their virulence, the A layer, and to produce smooth lipopolysaccharide is found to be important in the partitioning behavior of Aeromonas salmonicida. The presence of the A layer is shown to decrease the surface hydrophilicity of the pathogen, and to increase specifically its surface affinity for fatty acid esters of polyethylene glycol. The method has application to the analysis of surface properties crucial to bacterial virulence, and to the selection of strains and mutants with specific surface characteristics.

  7. Aeromonas salmonicida: updates on an old acquaintance.

    PubMed

    Menanteau-Ledouble, Simon; Kumar, Gokhlesh; Saleh, Mona; El-Matbouli, Mansour

    2016-06-15

    Aeromonas salmonicida is the oldest known infectious agent to be linked to fish disease and constitutes a major bacterial pathogen of fish, in particular of salmonids. This bacterium can be found almost worldwide in both marine and freshwater environments and has been divided into several sub-species. In this review, we present the most recent developments concerning our understanding of this pathogen, including how the characterization of new isolates from non-salmonid hosts suggests a more nuanced picture of the importance of the so‑called 'atypical isolates'. We also describe the clinical presentation regarding the infection across several fish species and discuss what is known about the virulence of A. salmonicida and, in particular, the role that the type 3 secretion system might play in suppressing the immune response of its hosts. Finally, isolates have displayed varied levels of antibiotic resistance. Hence, we review a number of solutions that have been developed both to prevent outbreaks and to treat them once they occur, including the application of pre- and probiotic supplements. PMID:27304870

  8. Synthesis, characterization and toxicological evaluation of Cr₂O₃ nanoparticles using Daphnia magna and Aliivibrio fischeri.

    PubMed

    Puerari, Rodrigo Costa; da Costa, Cristina H; Vicentini, Denice S; Fuzinatto, Cristiane F; Melegari, Silvia P; Schmidt, Éder C; Bouzon, Zenilda L; Matias, William G

    2016-06-01

    Chromium III oxide (Cr2O3) nanoparticles (NPs) are used in pigments for ceramics, dyes, paints and cosmetics. However, few studies addressing the toxic potential of these NPs have been reported in the literature. Thus, this research aimed to evaluate the acute and chronic effects of Cr2O3 NPs through acute toxicity tests with Daphnia magna and Aliivibrio fischeri and chronic toxicity tests with Daphnia magna. Cr2O3 NPs were synthesized by the sol-gel method and characterized through TEM, X-Ray diffraction (XRD), zeta potential (ZP) and surface area analysis. In the acute toxicity tests the EC(50,48h) value obtained with D. magna was 6.79 mg L(-1) and for A. fischeri the EC(50,15min) value was 16.10 mg L(-1) and the EC(50,30min) value was 12.91 mg L(-1). Regarding the chronic toxicity tests with D. magna, effects on longevity (OEC=1.00 mg L(-1)), reproduction (OEC=1.00 mg L(-1)) and growth (OEC=0.50 mg L(-1)) were observed. On the SEM and TEM images, ultrastructural alterations in the organelles of exposed organisms were also observed. Thus, toxicological studies with NPs are of great importance in order to reduce the risk of environmental contamination. PMID:26890188

  9. Effect of Lactococcus lactis CLFP 100 and Leuconostoc mesenteroides CLFP 196 on Aeromonas salmonicida Infection in brown trout (Salmo trutta).

    PubMed

    Balcázar, José Luis; Vendrell, Daniel; de Blas, Ignacio; Ruiz-Zarzuela, Imanol; Múzquiz, José Luis

    2009-01-01

    Aeromonas salmonicida is the etiological agent of furunculosis in salmonid fish. This pathogen is important from an epizootic perspective because fish surviving an outbreak can remain lifelong asymptomatic carriers, serving as reservoirs of infection. As a result, the early detection and the control of infection are essential to prevent the spread of new furunculosis outbreaks. We have thus analyzed the effect of probiotic administration on the incidence of A. salmonicida in brown trout (Salmo trutta), that were subjected to temperature stress. Treatment with probiotic strains (Lactococcus lactis CLFP 100 and Leuconostoc mesenteroides CLFP 196) resulted in a higher survival rate after challenge, activation of phagocytic cells in the head kidney, and a lower rate of pathogen proliferation in the intestine as determined by real-time PCR. PMID:19556745

  10. The AsaP1 Peptidase of Aeromonas salmonicida subsp. achromogenes Is a Highly Conserved Deuterolysin Metalloprotease (Family M35) and a Major Virulence Factor▿

    PubMed Central

    Arnadottir, Helga; Hvanndal, Iris; Andresdottir, Valgerdur; Burr, Sarah E.; Frey, Joachim; Gudmundsdottir, Bjarnheidur K.

    2009-01-01

    Infections by the bacterium Aeromonas salmonicida subsp. achromogenes cause significant disease in a number of fish species. In this study, we showed that AsaP1, a toxic 19-kDa metallopeptidase produced by A. salmonicida subsp. achromogenes, belongs to the group of extracellular peptidases (Aeromonas type) (MEROPS ID M35.003) of the deuterolysin family of zinc-dependent aspzincin endopeptidases. The structural gene of AsaP1 was sequenced and found to be highly conserved among gram-negative bacteria. An isogenic ΔasaP1 A. salmonicida subsp. achromogenes strain was constructed, and its ability to infect fish was compared with that of the wild-type (wt) strain. The ΔasaP1 strain was found to infect Arctic charr, Atlantic salmon, and Atlantic cod, but its virulence was decreased relative to that of the wt strain. The 50% lethal dose of the AsaP1 mutant was 10-fold higher in charr and 5-fold higher in salmon than that of the wt strain. The pathology induced by the AsaP1-deficient strain was also different from that of the wt strain. Furthermore, the mutant established significant bacterial colonization in all observed organs without any signs of a host response in the infected tissue. AsaP1 is therefore the first member of the M35 family that has been shown to be a bacterial virulence factor. PMID:18952802

  11. The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors

    PubMed Central

    2013-01-01

    Background Aeromonas salmonicida subsp. salmonicida, the etiologic agent of furunculosis, is a major pathogen of fisheries worldwide. Several virulence factors have been described, but the type-three secretion system (T3SS) is recognized as having a major effect on virulence by injecting effectors directly into fish cells. In this study we used high-throughput proteomics to display the differences between in vitro secretome of A. salmonicida wild-type (wt, hypervirulent, JF2267) and T3SS-deficient (isogenic ΔascV, extremely low-virulent, JF2747) strains in exponential and stationary phases of growth. Results Results confirmed the secretion of effectors AopH, AexT, AopP and AopO via T3SS, and for the first time demonstrated the impact of T3SS in secretion of Ati2, AopN and ExsE that are known as effectors in other pathogens. Translocators, needle subunits, Ati1, and AscX were also secreted in supernatants (SNs) dependent on T3SS. AopH, Ati2, AexT, AopB and AopD were in the top seven most abundant excreted proteins. EF-G, EF-Tu, DnaK, HtpG, PNPase, PepN and MdeA were moderately secreted in wt SNs and predicted to be putative T3 effectors by bioinformatics. Pta and ASA_P5G088 were increased in wt SNs and T3-associated in other bacteria. Ten conserved cytoplasmic proteins were more abundant in wt SNs than in the ΔascV mutant, but without any clear association to a secretion system. T1-secreted proteins were predominantly found in wt SNs: OmpAI, OmpK40, DegQ, insulinase ASA_0716, hypothetical ASA_0852 and ASA_3619. Presence of T3SS components in pellets was clearly decreased by ascV deletion, while no impact was observed on T1- and T2SS. Our results demonstrated that the ΔascV mutant strain excreted well-described (VapA, AerA, AerB, GCAT, Pla1, PlaC, TagA, Ahe2, GbpA and enolase) and yet uncharacterized potential toxins, adhesins and enzymes as much as or even more than the wt strain. Other putative important virulence factors were not detected. Conclusions We

  12. Microencapsulated Aliivibrio fischeri in alginate microspheres for monitoring heavy metal toxicity in environmental waters.

    PubMed

    Futra, Dedi; Heng, Lee Yook; Surif, Salmijah; Ahmad, Asmat; Ling, Tan Ling

    2014-01-01

    In this article a luminescence fiber optic biosensor for the microdetection of heavy metal toxicity in waters based on the marine bacterium Aliivibrio fischeri (A. fischeri) encapsulated in alginate microspheres is described. Cu(II), Cd(II), Pb(II), Zn(II), Cr(VI), Co(II), Ni(II), Ag(I) and Fe(II) were selected as sample toxic heavy metal ions for evaluation of the performance of this toxicity microbiosensor. The loss of bioluminescence response from immobilized A. fischeri bacterial cells corresponds to changes in the toxicity levels. The inhibition of the luminescent biosensor response collected at excitation and emission wavelengths of 287 ± 2 nm and 487 ± 2 nm, respectively, was found to be reproducible and repeatable within the relative standard deviation (RSD) range of 2.4-5.7% (n = 8). The toxicity biosensor based on alginate micropsheres exhibited a lower limit of detection (LOD) for Cu(II) (6.40 μg/L), Cd(II) (1.56 μg/L), Pb(II) (47 μg/L), Ag(I) (18 μg/L) than Zn(II) (320 μg/L), Cr(VI) (1,000 μg/L), Co(II) (1700 μg/L), Ni(II) (2800 μg/L), and Fe(III) (3100 μg/L). Such LOD values are lower when compared with other previous reported whole cell toxicity biosensors using agar gel, agarose gel and cellulose membrane biomatrices used for the immobilization of bacterial cells. The A. fischeri bacteria microencapsulated in alginate biopolymer could maintain their metabolic activity for a prolonged period of up to six weeks without any noticeable changes in the bioluminescence response. The bioluminescent biosensor could also be used for the determination of antagonistic toxicity levels for toxicant mixtures. A comparison of the results obtained by atomic absorption spectroscopy (AAS) and using the proposed luminescent A. fischeri-based biosensor suggests that the optical toxicity biosensor can be used for quantitative microdetermination of heavy metal toxicity in environmental water samples. PMID:25490588

  13. Microencapsulated Aliivibrio fischeri in Alginate Microspheres for Monitoring Heavy Metal Toxicity in Environmental Waters

    PubMed Central

    Futra, Dedi; Heng, Lee Yook; Surif, Salmijah; Ahmad, Asmat; Ling, Tan Ling

    2014-01-01

    In this article a luminescence fiber optic biosensor for the microdetection of heavy metal toxicity in waters based on the marine bacterium Aliivibrio fischeri (A. fischeri) encapsulated in alginate microspheres is described. Cu(II), Cd(II), Pb(II), Zn(II), Cr(VI), Co(II), Ni(II), Ag(I) and Fe(II) were selected as sample toxic heavy metal ions for evaluation of the performance of this toxicity microbiosensor. The loss of bioluminescence response from immobilized A. fischeri bacterial cells corresponds to changes in the toxicity levels. The inhibition of the luminescent biosensor response collected at excitation and emission wavelengths of 287 ± 2 nm and 487 ± 2 nm, respectively, was found to be reproducible and repeatable within the relative standard deviation (RSD) range of 2.4–5.7% (n = 8). The toxicity biosensor based on alginate micropsheres exhibited a lower limit of detection (LOD) for Cu(II) (6.40 μg/L), Cd(II) (1.56 μg/L), Pb(II) (47 μg/L), Ag(I) (18 μg/L) than Zn(II) (320 μg/L), Cr(VI) (1,000 μg/L), Co(II) (1700 μg/L), Ni(II) (2800 μg/L), and Fe(III) (3100 μg/L). Such LOD values are lower when compared with other previous reported whole cell toxicity biosensors using agar gel, agarose gel and cellulose membrane biomatrices used for the immobilization of bacterial cells. The A. fischeri bacteria microencapsulated in alginate biopolymer could maintain their metabolic activity for a prolonged period of up to six weeks without any noticeable changes in the bioluminescence response. The bioluminescent biosensor could also be used for the determination of antagonistic toxicity levels for toxicant mixtures. A comparison of the results obtained by atomic absorption spectroscopy (AAS) and using the proposed luminescent A. fischeri-based biosensor suggests that the optical toxicity biosensor can be used for quantitative microdetermination of heavy metal toxicity in environmental water samples. PMID:25490588

  14. Development and evaluation of a multiplex PCR assay for simultaneous detection of Flavobacterium psychrophilum, Yersinia ruckeri and Aeromonas salmonicida subsp. salmonicida in culture fisheries.

    PubMed

    Onuk, Ertan Emek; Ciftci, Alper; Findik, Arzu; Durmaz, Yuksel

    2010-09-01

    Bacterial cold water disease, enteric red mouth disease and frunculosis are the common bacterial diseases of fish worldwide. The etiologic agents of these diseases are Flavobacterium (F.) psychrophilum, Yersinia (Y.) ruckeri and Aeromonas (A.) salmonicida subsp. salmonicida, respectively. In this study, a multiplex polymerase chain reaction (m-PCR) method with YER8/10-Fer3/4-FP1/3 primer pairs which can identify these fish pathogens simultaneously was developed and optimized. In optimized conditions, neither false specific nor nonspecific amplification occurred. The detection limits of the m-PCR method using DNA extracts from dilutions of pure cultures of bacteria were 35 pg for Y. ruckeri and F. psychrophilum and 70 pg for A. salmonicida subsp. salmonicida. It was determined that 15 CFU Y. ruckeri and F. psychrophilum and 30 CFU A. salmonicida subsp. salmonicida could be detected by m-PCR developed using genomic DNA extracted from dilutions of the suspensions. The detection limits in the presence of tissue debris were 125 CFU for Y. ruckeri and F. psychrophilum and 250 CFU for A. salmonicida subsp. salmonicida. In conclusion, we submit that the m-PCR method developed and optimized in this study can be used for accurate and rapid identification of these bacteria. PMID:20706031

  15. Development of a PCR protocol for the detection of Aeromonas salmonicida in fish by amplification of the fstA (ferric siderophore receptor) gene.

    PubMed

    Beaz-Hidalgo, Roxana; Magi, Gian Enrico; Balboa, Sabela; Barja, Juan L; Romalde, Jesús L

    2008-04-30

    The aims of the study were to evaluate a new PCR protocol designed to detect Aeromonas salmonicida in fish tissues and to develop a non-destructive method for the diagnosis of furunculosis. A set of primers (Fer3, Fer4), flanking a fragment of the fstA gene (coding for the ferric-siderophore receptor) was designed, showing to be sensitive and specific. When compared to PCR methods previously reported, the new protocol recognized all the 69 A. salmonicida strains evaluated, with no cross-reactions with the other bacterial species analysed. Sensitivity assays were performed in fish tissues seeded with serial dilutions of pure cultures of A. salmonicida and mixed cultures of this bacterium with Vibrio anguillarum and Aeromonas hydrophila. Detection limits obtained were of 60 and 450 bacterial cells 100 mg(-1) of tissue, respectively. Mucus and blood were evaluated in order to develop a non-destructive tool to detect the pathogen. The detection limits in seeded mucus and blood samples were 2.5 x 10(2) and 1 x 10(5) bacterial cells mL(-1), respectively. When the method was used to detect A. salmonicida in asymptomatic wild salmon, four samples of mucus and six of blood were positive, corresponding to 6 out of the 31 fish examined, whereas only one of the samples resulted positive by culture methods. It is concluded that the PCR protocol evaluated is fast, specific and sensitive to detect A. salmonicida in infected and asymptomatic fish, and will be helpful for the control of the disease through the prompt detection of carriers within fish populations. PMID:18035507

  16. QTL detection for Aeromonas salmonicida resistance related traits in turbot (Scophthalmus maximus)

    PubMed Central

    2011-01-01

    Background Interactions between fish and pathogens, that may be harmless under natural conditions, often result in serious diseases in aquaculture systems. This is especially important due to the fact that the strains used in aquaculture are derived from wild strains that may not have had enough time to adapt to new disease pressures. The turbot is one of the most promising European aquaculture species. Furunculosis, caused by the bacterium Aeromonas salmonicida, produces important losses to turbot industry. An appealing solution is to achieve more robust broodstock, which can prevent or diminish the devastating effects of epizooties. Genomics strategies have been developed in turbot to look for candidate genes for resistance to furunculosis and a genetic map with appropriate density to screen for genomic associations has been also constructed. In the present study, a genome scan for QTL affecting resistance and survival to A. salmonicida in four turbot families was carried out. The objectives were to identify consistent QTL using different statistical approaches (linear regression and maximum likelihood) and to locate the tightest associated markers for their application in genetic breeding strategies. Results Significant QTL for resistance were identified by the linear regression method in three linkage groups (LGs 4, 6 and 9) and for survival in two LGs (6 and 9). The maximum likelihood methodology identified QTL in three LGs (5, 6 and 9) for both traits. Significant association between disease traits and genotypes was detected for several markers, some of them explaining up to 17% of the phenotypic variance. We also identified candidate genes located in the detected QTL using data from previously mapped markers. Conclusions Several regions controlling resistance to A. salmonicida in turbot have been detected. The observed concordance between different statistical methods at particular linkage groups gives consistency to our results. The detected associated

  17. Effects of temperature on biochemical reactions and drug resistance of virulent and avirulent Aeromonas salmonicida

    USGS Publications Warehouse

    Hahnel, G.B.; Gould, R.W.

    1982-01-01

    Incubation temperatures of 11°, 18° and 28° did not substantially affect biochemical reactions of either virulent or avirulent forms of Aeromonas salmonicida subspecies salmonicida. The only change observed, amygdalin fermentation, was positive at 11° and 18° but negative at 28°C. Several isolates utilized sucrose, a characteristic not normally recognized for A. salmonicida subspecies salmonicida.Antimicrobial susceptibility screening indicated resistance to novobiocin increased at the higher incubation temperatures. Standardized drug sensitivity testing procedures and precise zone diameter interpretive standards for bacterial fish pathogens are needed.

  18. Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin

    PubMed Central

    Attéré, Sabrina A.; Vincent, Antony T.; Trudel, Mélanie V.; Chanut, Romain; Charette, Steve J.

    2015-01-01

    Furunculosis, which is caused by Aeromonas salmonicida subsp. salmonicida, is a major salmonid disease in fish farms worldwide. Several plasmids found in this bacterium confer phenotypes such drug resistance and virulence. Small plasmids (pAsa1, pAsa2, pAsa3, and pAsal1) related to ColE1- and ColE2-type replicons are usually present in its normal plasmidome. In the present study, with the objective to investigate if these plasmids display particularities related to the origin of the isolates bearing them, a total of 153 isolates, including 78 new and 75 previously described, were analyzed for the presence of small plasmids by PCR and DNA restriction fragment profiling. A geographical dichotomy between Canadian and European isolates for their propensity to do not have pAsa3 or pAsal1 was found. In addition, the genotyping analysis led to the identification of two European isolates harboring an unusual pAsal1. An investigation by next-generation sequencing (NGS) of these two isolates shed light on two pAsal1 variants (pAsal1C and pAsal1D). As with pAsal1B, another pAsal1 variant previously described, these two new variants bore a second insertion sequence (ISAS5) in addition to the usual ISAS11. The characterization of these variants suggested that they could predominate over the wild-type pAsal1 in stressful conditions such as growth at temperatures of 25°C and above. To obtain a comprehensive portrait of the mutational pressure on small plasmids, 26 isolates whose DNA had been sequenced by NGS were investigated. pAsa3 and pAsal1 were more prone to mutations than pAsa1 and pAsa2, especially in the mobA gene, which encodes a relaxase and a primase. Lastly, the average copy number of each plasmid per cell was assessed using raw sequencing data. A clear trend with respect to the relative proportion per cell of each plasmid was identified. Our large-scale study revealed a geographical dichotomy in small plasmid repertoire in addition to a clear trend for pAsa3 and p

  19. Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin.

    PubMed

    Attéré, Sabrina A; Vincent, Antony T; Trudel, Mélanie V; Chanut, Romain; Charette, Steve J

    2015-01-01

    Furunculosis, which is caused by Aeromonas salmonicida subsp. salmonicida, is a major salmonid disease in fish farms worldwide. Several plasmids found in this bacterium confer phenotypes such drug resistance and virulence. Small plasmids (pAsa1, pAsa2, pAsa3, and pAsal1) related to ColE1- and ColE2-type replicons are usually present in its normal plasmidome. In the present study, with the objective to investigate if these plasmids display particularities related to the origin of the isolates bearing them, a total of 153 isolates, including 78 new and 75 previously described, were analyzed for the presence of small plasmids by PCR and DNA restriction fragment profiling. A geographical dichotomy between Canadian and European isolates for their propensity to do not have pAsa3 or pAsal1 was found. In addition, the genotyping analysis led to the identification of two European isolates harboring an unusual pAsal1. An investigation by next-generation sequencing (NGS) of these two isolates shed light on two pAsal1 variants (pAsal1C and pAsal1D). As with pAsal1B, another pAsal1 variant previously described, these two new variants bore a second insertion sequence (ISAS5) in addition to the usual ISAS11. The characterization of these variants suggested that they could predominate over the wild-type pAsal1 in stressful conditions such as growth at temperatures of 25°C and above. To obtain a comprehensive portrait of the mutational pressure on small plasmids, 26 isolates whose DNA had been sequenced by NGS were investigated. pAsa3 and pAsal1 were more prone to mutations than pAsa1 and pAsa2, especially in the mobA gene, which encodes a relaxase and a primase. Lastly, the average copy number of each plasmid per cell was assessed using raw sequencing data. A clear trend with respect to the relative proportion per cell of each plasmid was identified. Our large-scale study revealed a geographical dichotomy in small plasmid repertoire in addition to a clear trend for pAsa3 and p

  20. Isolation of Aeromonas salmonicida from Human Blood Sample: A Case Report.

    PubMed

    Tewari, Rachna; Dudeja, Mridu; Nandy, Shyamasree; Das, Ayan Kumar

    2014-02-01

    Aeromonas salmonicida belonging to the genus Aeromonas, is a common pathogen that causes furunculosis and septicaemia in variety of fishes. It infects cold blooded vertebrates living at low temperatures mainly salmonid fish hence named salmonicida. Untill recently Aeromanas salmonicida is considered to be a fish pathogen. A. salmonicida is considered to be non-pathogenic for humans as it cannot grow at 37ºC. "However, In our laboratory culture plates and broths were incubated twice at 37ºC and each time same type of colonies were isolated which were identified as A. samonicida by Vitek 2 compact system bioMerieux, Inc. (Durham, N.C.)". By far no report has been received regarding its isolation from humans biological sample. Here we present the first report of A. salmonicida isolated from the human blood. PMID:24701507

  1. A toxicity assessment of 30 pharmaceuticals using Aliivibrio fischeri: a comparison of the acute effects of different formulations.

    PubMed

    Jacob, Raquel Sampaio; Santos, Lucilaine Valéria de Souza; de Souza, Ana Flávia Rodrigues; Lange, Liséte Celina

    2016-11-01

    Considerable quantities of different classes of drugs are consumed annually worldwide. These drugs, once disposed, often remain stable, even after conventional or advanced treatments. Although there have been a number of studies on the potential harm caused by drugs when released into the environment, few studies have investigated the toxicity of pharmaceutical excipients. In the present study, the acute toxicity of 30 drugs was tested to Aliivibrio fischeri. Ten different active ingredients were investigated, each in three distinct formulations: generic, similar and reference (brand drug). The aim of the study was to evaluate the harmful potential of drugs frequently sold in drugstores and to assess the contribution of excipients towards the observed acute toxicity. Within the 10 drugs evaluated, only one, dexchlorpheniramine maleate, was not toxic in any formulation. The toxicities of the three formulations were often different, even though the active ingredient has been the same. For some drugs, such as diazepam, glibenclamide, metformin, nimesulide, hydrochlorothiazide and simvastatin, only one or two of the three formulations tested were toxic to A. fischeri. These results highlight the toxicological potential of drug excipients, but not exclusively the toxicity of the active ingredients. PMID:27020342

  2. Detection of Variants of the pRAS3, pAB5S9, and pSN254 Plasmids in Aeromonas salmonicida subsp. salmonicida: Multidrug Resistance, Interspecies Exchanges, and Plasmid Reshaping

    PubMed Central

    Vincent, Antony T.; Trudel, Mélanie V.; Paquet, Valérie E.; Boyle, Brian; Tanaka, Katherine H.; Dallaire-Dufresne, Stéphanie; Daher, Rana K.; Frenette, Michel; Derome, Nicolas

    2014-01-01

    The ubiquitous water-borne Gram-negative bacterium Aeromonas salmonicida subsp. salmonicida is the causative agent of furunculosis, a worldwide disease in fish farms. Plasmids carrying antibiotic resistance genes have already been described for this bacterium. The aim of the present study was to identify and characterize additional multidrug resistance plasmids in A. salmonicida subsp. salmonicida. We sequenced the plasmids present in two multiple antibiotic-resistant isolates using high-throughput technologies. We also investigated 19 other isolates with various multidrug resistance profiles by genotyping PCR and assessed their resistance to tetracycline. We identified variants of the pAB5S9 and pSN254 plasmids that carry several antibiotic resistance genes and that have been previously reported in bacteria other than A. salmonicida subsp. salmonicida, which suggests a high level of interspecies exchange. Genotyping analyses and the antibiotic resistance profiles of the 19 other isolates support the idea that multiple versions of pAB5S9 and pSN254 exist in A. salmonicida subsp. salmonicida. We also identified variants of the pRAS3 plasmid. The present study revealed that A. salmonicida subsp. salmonicida harbors a wide variety of plasmids, which suggests that this ubiquitous bacterium may contribute to the spread of antibiotic resistance genes in the environment. PMID:25267667

  3. Detection of variants of the pRAS3, pAB5S9, and pSN254 plasmids in Aeromonas salmonicida subsp. salmonicida: multidrug resistance, interspecies exchanges, and plasmid reshaping.

    PubMed

    Vincent, Antony T; Trudel, Mélanie V; Paquet, Valérie E; Boyle, Brian; Tanaka, Katherine H; Dallaire-Dufresne, Stéphanie; Daher, Rana K; Frenette, Michel; Derome, Nicolas; Charette, Steve J

    2014-12-01

    The ubiquitous water-borne Gram-negative bacterium Aeromonas salmonicida subsp. salmonicida is the causative agent of furunculosis, a worldwide disease in fish farms. Plasmids carrying antibiotic resistance genes have already been described for this bacterium. The aim of the present study was to identify and characterize additional multidrug resistance plasmids in A. salmonicida subsp. salmonicida. We sequenced the plasmids present in two multiple antibiotic-resistant isolates using high-throughput technologies. We also investigated 19 other isolates with various multidrug resistance profiles by genotyping PCR and assessed their resistance to tetracycline. We identified variants of the pAB5S9 and pSN254 plasmids that carry several antibiotic resistance genes and that have been previously reported in bacteria other than A. salmonicida subsp. salmonicida, which suggests a high level of interspecies exchange. Genotyping analyses and the antibiotic resistance profiles of the 19 other isolates support the idea that multiple versions of pAB5S9 and pSN254 exist in A. salmonicida subsp. salmonicida. We also identified variants of the pRAS3 plasmid. The present study revealed that A. salmonicida subsp. salmonicida harbors a wide variety of plasmids, which suggests that this ubiquitous bacterium may contribute to the spread of antibiotic resistance genes in the environment. PMID:25267667

  4. Antibiotic resistance due to an unusual ColE1-type replicon plasmid in Aeromonas salmonicida.

    PubMed

    Vincent, Antony T; Emond-Rheault, Jean-Guillaume; Barbeau, Xavier; Attéré, Sabrina A; Frenette, Michel; Lagüe, Patrick; Charette, Steve J

    2016-06-01

    Aeromonas salmonicida subsp. salmonicida is a fish pathogen known to have a rich plasmidome. In the present study, we discovered an isolate of this bacterium bearing an additional unidentified small plasmid. After having sequenced the DNA of that isolate by next-generation sequencing, it appeared that the new small plasmid is a ColE1-type replicon plasmid, named here pAsa7. This plasmid bears a functional chloramphenicol-acetyltransferase-encoding gene (cat-pAsa7) previously unknown in A. salmonicida and responsible for resistance to chloramphenicol. A comparison of pAsa7 with pAsa2, the only known ColE1-type replicon plasmid usually found in A. salmonicida subsp. salmonicida, revealed that even if both plasmids share a high structural similarity, it is still unclear if pAsa7 is a derivative of pAsa2 since they showed several mutations at the nucleotide level. Transcriptomic analysis revealed that the cat-pAsa4 gene, another chloramphenicol-acetyltransferase-encoding gene, found on the large plasmid pAsa4, was significantly more transcribed than cat-pAsa7. This was correlated with a higher chloramphenicol resistance for isolates bearing pAsa4 compared with the one having pAsa7. Finally, a phylogenetic analysis showed that both CAT-pAsa4 and CAT-pAsa7 proteins were in different clusters. The clustering was supported by the identity of residues involved in the catalytic site. In addition, to give a better understanding of the large drug-resistance panel of A. salmonicida, this study reinforces the hypothesis that A. salmonicida subsp. salmonicida is a considerable reservoir for mobile genetic elements such as plasmids. PMID:27028891

  5. The Genome of Spironucleus salmonicida Highlights a Fish Pathogen Adapted to Fluctuating Environments

    PubMed Central

    Xu, Feifei; Jerlström-Hultqvist, Jon; Einarsson, Elin; Ástvaldsson, Ásgeir; Svärd, Staffan G.; Andersson, Jan O.

    2014-01-01

    Spironucleus salmonicida causes systemic infections in salmonid fish. It belongs to the group diplomonads, binucleated heterotrophic flagellates adapted to micro-aerobic environments. Recently we identified energy-producing hydrogenosomes in S. salmonicida. Here we present a genome analysis of the fish parasite with a focus on the comparison to the more studied diplomonad Giardia intestinalis. We annotated 8067 protein coding genes in the ∼12.9 Mbp S. salmonicida genome. Unlike G. intestinalis, promoter-like motifs were found upstream of genes which are correlated with gene expression, suggesting a more elaborate transcriptional regulation. S. salmonicida can utilise more carbohydrates as energy sources, has an extended amino acid and sulfur metabolism, and more enzymes involved in scavenging of reactive oxygen species compared to G. intestinalis. Both genomes have large families of cysteine-rich membrane proteins. A cluster analysis indicated large divergence of these families in the two diplomonads. Nevertheless, one of S. salmonicida cysteine-rich proteins was localised to the plasma membrane similar to G. intestinalis variant-surface proteins. We identified S. salmonicida homologs to cyst wall proteins and showed that one of these is functional when expressed in Giardia. This suggests that the fish parasite is transmitted as a cyst between hosts. The extended metabolic repertoire and more extensive gene regulation compared to G. intestinalis suggest that the fish parasite is more adapted to cope with environmental fluctuations. Our genome analyses indicate that S. salmonicida is a well-adapted pathogen that can colonize different sites in the host. PMID:24516394

  6. Immunohistochemical study of inducible nitric oxide synthase and tumour necrosis factor alpha response in turbot (Scophthalmus maximus) experimentally infected with Aeromonas salmonicida subsp. salmonicida.

    PubMed

    Coscelli, Germán; Bermúdez, Roberto; Ronza, Paolo; Losada, Ana Paula; Quiroga, María Isabel

    2016-09-01

    Aeromonas salmonicida subsp. salmonicida represents one of the major threats in aquaculture, especially in salmonid fish and turbot farming. In order to fight bacterial infections, fish have an immune system composed by innate and specific cellular and humoral elements analogous to those present in mammals. However, innate immunity plays a primordial role against bacterial infections in teleost fish. Among these non-specific mechanisms, the production of nitric oxide (NO) by inducible nitric oxide synthase (iNOS) pathway and the tumour necrosis factor-alpha (TNFα) produced by mononuclear phagocytes, are two of the main immune effectors to eliminate bacterial pathogens. In this study, the distribution and kinetic of iNOS and TNFα-producing cells of kidney and spleen of turbot experimentally inoculated with A. salmonicida was assessed by immunohistochemistry. In control and challenged fish, individual iNOS(+) and TNFα(+) cells, showing a similar pattern of distribution, were detected. In challenged fish, the number of immunoreactive cells was significantly increased in the evaluated organs, as well as the melanomacrophage centres showed variable positivity for both antigens. These results indicate that A. salmonicida induced an immune response in challenged turbot, which involved the increase of the activity of iNOS and TNFα in the leukocytic population from kidney and spleen. PMID:27431586

  7. Peroxide-inducible catalase in Aeromonas salmonicida subsp. salmonicida protects against exogenous hydrogen peroxide and killing by activated rainbow trout, Oncorhynchus mykiss L., macrophages.

    PubMed

    Barnes, A C; Bowden, T J; Horne, M T; Ellis, A E

    1999-03-01

    Aeromonas salmonicida subsp. salmonicida expresses a single cytoplasmically located catalase which was found to be inducible by exposure to 20 microM hydrogen peroxide in mid-exponential phase resulting in a 4 fold increase in activity. Subsequent exposure to 2 mM peroxide in late-exponential/early-stationary phase resulted in further induction of catalase activity which increased to 20 fold higher levels than those found in uninduced cultures. Exponentially induced cultures were protected against subsequent exposure to 10 mM peroxide which was lethal to non-induced cultures. Bacteria subjected to induction in mid-exponential and early-stationary phase were resistant to 100 mM peroxide, although viability was greatly reduced. Growth of the bacterium under iron-restricted conditions had no effect on the peroxide induction of catalase. As current evidence indicates, the latter is an iron-co-factored heme catalase, this result suggests that catalase induction has a high priority in the metabolism of iron. Furthermore, exposure to peroxide also induces expression of periplasmic MnSOD. A. salmonicida MT423 was resistant to normal rainbow trout macrophages, but was susceptible to killing by activated macrophages. However, if catalase was induced by prior exposure to 20 microM peroxide during mid-exponential phase, A. salmonicida was resistant to killing by activated macrophages. The ability of A. salmonicida to upregulate periplasmic MnSOD and cytoplasmic catalase production under iron restricted conditions and low level peroxide (conditions expected to exist during the early stages of an infection) may be vital for its ability to withstand attack by phagocytic cells in vivo. PMID:10089155

  8. Aeromonas salmonicida Ati2 is an effector protein of the type three secretion system.

    PubMed

    Dallaire-Dufresne, Stéphanie; Barbeau, Xavier; Sarty, Darren; Tanaka, Katherine H; Denoncourt, Alix M; Lagüe, Patrick; Reith, Michael E; Charette, Steve J

    2013-09-01

    The bacterium Aeromonas salmonicida, a fish pathogen, uses the type three secretion system (TTSS) to inject effector proteins into host cells to promote the infection. The study of the genome of A. salmonicida has revealed the existence of Ati2, a potential TTSS effector protein. In the present study, a structure-function analysis of Ati2 has been done to determine its role in the virulence of A. salmonicida. Biochemical assays revealed that Ati2 is secreted into the medium in a TTSS-dependent manner. Protein sequence analyses, molecular modelling and biochemical assays demonstrated that Ati2 is an inositol polyphosphate 5-phosphatase, which hydrolyses PtdIns(4,5)P2 and PtdIns(3,4,5)P3 in a way similar to VPA0450, a protein from Vibrio parahaemolyticus having high sequence similarity with Ati2. Mutants of Ati2 with altered amino acids at two different locations in the catalytic site displayed no phosphatase activity. Wild-type and mutant forms of Ati2 were cloned into expression systems for Dictyostelium discoideum, a soil amoeba used as an alternative host to study A. salmonicida virulence. Expression tests allowed us to demonstrate that Ati2 is toxic for the host cell in a catalytic-dependent manner. Finally, this study demonstrated the existence of a new TTSS effector protein in A. salmonicida. PMID:23832001

  9. Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT

    PubMed Central

    Pavan, María Elisa; Pavan, Esteban E.; López, Nancy I.; Levin, Laura

    2015-01-01

    Aeromonas salmonicida subsp. pectinolytica 34melT can be considered an extremophile due to the characteristics of the heavily polluted river from which it was isolated. While four subspecies of A. salmonicida are known fish pathogens, 34melT belongs to the only subspecies isolated solely from the environment. Genome analysis revealed a high metabolic versatility, the capability to cope with diverse stress agents, and the lack of several virulence factors found in pathogenic Aeromonas. The most relevant phenotypic characteristics of 34melT are pectin degradation, a distinctive trait of A. salmonicida subsp. pectinolytica, and melanin production. Genes coding for three pectate lyases were detected in a cluster, unique to this microorganism, that contains all genes needed for pectin degradation. Melanin synthesis in 34melT is hypothesized to occur through the homogentisate pathway, as no tyrosinases or laccases were detected and the homogentisate 1,2-dioxygenase gene is inactivated by a transposon insertion, leading to the accumulation of the melanin precursor homogentisate. Comparative genome analysis of other melanogenic Aeromonas strains revealed that this gene was inactivated by transposon insertions or point mutations, indicating that melanin biosynthesis in Aeromonas occurs through the homogentisate pathway. Horizontal gene transfer could have contributed to the adaptation of 34melT to a highly polluted environment, as 13 genomic islands were identified in its genome, some of them containing genes coding for fitness-related traits. Heavy metal resistance genes were also found, along with others associated with oxidative and nitrosative stresses. These characteristics, together with melanin production and the ability to use different substrates, may explain the ability of this microorganism to live in an extremely polluted environment. PMID:26025898

  10. Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT.

    PubMed

    Pavan, María Elisa; Pavan, Esteban E; López, Nancy I; Levin, Laura; Pettinari, M Julia

    2015-08-01

    Aeromonas salmonicida subsp. pectinolytica 34mel(T) can be considered an extremophile due to the characteristics of the heavily polluted river from which it was isolated. While four subspecies of A. salmonicida are known fish pathogens, 34mel(T) belongs to the only subspecies isolated solely from the environment. Genome analysis revealed a high metabolic versatility, the capability to cope with diverse stress agents, and the lack of several virulence factors found in pathogenic Aeromonas. The most relevant phenotypic characteristics of 34mel(T) are pectin degradation, a distinctive trait of A. salmonicida subsp. pectinolytica, and melanin production. Genes coding for three pectate lyases were detected in a cluster, unique to this microorganism, that contains all genes needed for pectin degradation. Melanin synthesis in 34mel(T) is hypothesized to occur through the homogentisate pathway, as no tyrosinases or laccases were detected and the homogentisate 1,2-dioxygenase gene is inactivated by a transposon insertion, leading to the accumulation of the melanin precursor homogentisate. Comparative genome analysis of other melanogenic Aeromonas strains revealed that this gene was inactivated by transposon insertions or point mutations, indicating that melanin biosynthesis in Aeromonas occurs through the homogentisate pathway. Horizontal gene transfer could have contributed to the adaptation of 34mel(T) to a highly polluted environment, as 13 genomic islands were identified in its genome, some of them containing genes coding for fitness-related traits. Heavy metal resistance genes were also found, along with others associated with oxidative and nitrosative stresses. These characteristics, together with melanin production and the ability to use different substrates, may explain the ability of this microorganism to live in an extremely polluted environment. PMID:26025898

  11. Detection of the causative agent of furunculusis, Aeromonas salmonicida in salmonids of the Krka River.

    PubMed

    Kapetanović, D; Vardić, I; Kurtović, B; Valić, D; Teskeredzić, E

    2008-02-01

    In this paper we describe the bacterial community associated with salmonids from the Krka River. Diversity analysis demonstrated that majority of the recovered bacteria were related to Aeromonadaceae group. Bacterial analysis also revealed the presence of Shigella spp. and Pseudomonas fluorescens. Isolation of Aeromonas salmonicida from trout, presents first isolation of this bacteria Croatian rivers. PMID:17624808

  12. Evaluation of commercially prepared transport systems for nonlethal detection of Aeromonas salmonicida in salmonid fish

    USGS Publications Warehouse

    Cipriano, R.C.; Bullock, G.L.

    2001-01-01

    In vitro studies indicated that commercially prepared transport systems containing Amies, Stuart's, and Cary-Blair media worked equally well in sustaining the viability of the fish pathogen Aeromonas salmonicida, which causes furunculosis. The bacterium remained viable without significant increase or decrease in cell numbers for as long as 48 h of incubation at 18-20??C in Stuart's transport medium; consequently, obtaining mucus samples in such tubes were comparable to on-site detection of A. salmonicida by dilution plate counts on Coomassie Brilliant Blue agar. In three different assays of 100 samples of mucus from Atlantic salmon Salmo salar infected subclinically with A. salmonicida, dilution counts conducted on-site proved more reliable for detecting the pathogen than obtaining the samples in the transport system. In the on-site assays, dilution counts detected the pathogen in 34, 41, and 22 samples, whereas this was accomplished in only 15, 15, and 3 of the respective samples when the transport system was used. In an additional experiment, Arctic char Salvelinus alpinus sustaining a frank epizootic of furunculosis were sampled similarly. Here, too, dilution counts were more predictive of the prevalence of A. salmonicida and detected the pathogen in 46 mucus samples; in comparison, only 6 samples collected by using the transport system were positive. We also observed that the transport system supported the growth of the normal mucus bacterial flora. Particularly predominant among these were motile aeromonads and Pseudomonas fluorescens. In studies of mixed culture growth, two representatives of both of the latter genera of bacteria outgrew A. salmonicida - in some cases, to the total exclusion of the pathogen itself.

  13. Quarantine of Aeromonas salmonicida-harboring ebonyshell mussels (Fusconaia ebena) prevents transmission of the pathogen to brook trout (Salvelinus fontinalis)

    USGS Publications Warehouse

    Starliper, C.E.

    2005-01-01

    Furunculosis, caused by the bacterium Aeromonas salmonicida, was artificially induced in brook trout (Salvelinus fontinalis) in an experimental tank. Ebonyshells (Fusconaia ebena) were placed to cohabit with these fish to acquire the pathogen through siphoning. After 2 wk of cohabitation, 10 of the mussels were assayed by bacterial culture and all were found to harbor A. salmonicida. The mean cell count from soft tissue homogenates was 1.84 ?? 105 cfu/g, which comprised an average 14.41% of the total bacteria isolated from tissues. From the fluids, a mean of 2.84 ?? 105 A. salmonicida cfu/mL was isolated, which comprised an average of 17.29% of the total bacterial flora. The mussels were removed from the cohabitation tank and distributed equally among five previously disinfected tanks, 35 per tank. The F. ebena in each tank were allowed to depurate A. salmonicida for various durations: 1, 5, 10, 15 or 30 days. After each group had depurated for their assigned time, 10 were assayed for bacteria, tank water was tested, and 20 pathogen-free bioindicator brook trout were added to cohabit with the remaining mussels. Depuration was considered successful if A. salmonicida was not isolated from tank water or the mussels, and there was no infection or mortality to bioindicator fish. After 1 day of depuration, A. salmonicida was not isolated from the soft tissues; however, it was isolated from one of the paired fluids (10% prevalence). The tank water tested positive, and the bioindicator fish became infected and died. From the 5-day depuration group, A. salmonicida was not isolated from soft tissues, but was isolated from three fluids (30%; mean = 1.56 ?? 102 cfu/mL). Tank water from the 5-day group was negative, and there was no mortality among the bioindicator fish. However, A. salmonicida was isolated from 2 of 20 fish at the end of the 14-day observation period. One F. ebena fluid sample was positive for A. salmonicida from the 10-day depuration group, but none of the

  14. Aeromonas salmonicida binds differentially to mucins isolated from skin and intestinal regions of Atlantic salmon in an N-acetylneuraminic acid-dependent manner.

    PubMed

    Padra, János T; Sundh, Henrik; Jin, Chunsheng; Karlsson, Niclas G; Sundell, Kristina; Lindén, Sara K

    2014-12-01

    Aeromonas salmonicida subsp. salmonicida infection, also known as furunculosis disease, is associated with high morbidity and mortality in salmonid aquaculture. The first line of defense the pathogen encounters is the mucus layer, which is predominantly comprised of secreted mucins. Here we isolated and characterized mucins from the skin and intestinal tract of healthy Atlantic salmon and studied how A. salmonicida bound to them. The mucins from the skin, pyloric ceca, and proximal and distal intestine mainly consisted of mucins soluble in chaotropic agents. The mucin density and mucin glycan chain length from the skin were lower than were seen with mucin from the intestinal tract. A. salmonicida bound to the mucins isolated from the intestinal tract to a greater extent than to the skin mucins. The mucins from the intestinal regions had higher levels of sialylation than the skin mucins. Desialylating intestinal mucins decreased A. salmonicida binding, whereas desialylation of skin mucins resulted in complete loss of binding. In line with this, A. salmonicida also bound better to mammalian mucins with high levels of sialylation, and N-acetylneuraminic acid appeared to be the sialic acid whose presence was imperative for binding. Thus, sialylated structures are important for A. salmonicida binding, suggesting a pivotal role for sialylation in mucosal defense. The marked differences in sialylation as well as A. salmonicida binding between the skin and intestinal tract suggest interorgan differences in the host-pathogen interaction and in the mucin defense against A. salmonicida. PMID:25287918

  15. Precipitating antibody against Aeromonas salmonicida in serums of inbred albino Rainbow Trout (Salmo gairdneri)

    USGS Publications Warehouse

    Anderson, Douglas P.; Klontz, George W.

    1970-01-01

    Precipitins in albino rainbow trout serums were demonstrated by gel diffusion after a single parenteral exposure to the soluble antigens of Aeromonas salmonicida. The fraction of the serum containing antibody activity against the presented antigens was shown by immunoelectrophoresis to be in the nonmigrating region. This corresponded to the beta-2 fraction of rabbit serum. An antibody-containing component comparable with rabbit gamma globulin was not detected.

  16. Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).

    PubMed

    Eisenberg, Tobias; Kämpfer, Peter; Ewers, Christa; Semmler, Torsten; Glaeser, Stefanie P; Collins, Evelyn; Ruttledge, Margaret; Palmer, Roy

    2016-06-01

    A pleomorphic, Gram-negative, rod-shaped, indole-, oxidase- and catalase- negative, non-spore-forming, non-motile bacterium was originally isolated in 1992 from moribund, seawater farmed Atlantic salmon with multifocal tissue necrosis. Strain AVG 2115T displayed considerable similarities with Streptobacillus moniliformis, one of the two etiological agents of rat bite fever, and has been stored as Streptobacillus sp. NCIMB 703044T. On the basis of 16S rRNA gene sequence analyses, this strain displayed >99 % sequence similarities with uncultured bacterial clones from the digestive tracts of marine mammals, followed by Sneathia sanguinegens CCUG 41628T (92.7 %), 'Sneathia amnii' Sn35 (92.5 %), Caviibacter abscessus CCUG 39713T (92.2 %), Streptobacillus ratti OGS16T (91.3 %), Streptobacillus notomytis AHL 370-1T (91.2 %), S. moniliformis DSM 12112T (91.0 %), Streptobacillus felis 131000547T (90.9 %) and Streptobacillus hongkongensis DSM 26322T (89.7 %). Sequence similarities to all other taxa were below 89 %. Phylogenetic analysis for strain NCIMB 703044T revealed highly similar results for gyrB, groEL and recA nucleotide and deduced amino acid sequence analyses independent of the employed treeing method. Average nucleotide identities (ANI) for complete genomes ranged from 66.00 % to 72.08 % between strain NCIMB 703044T and the type strains of Sebaldella termitidis, Leptotrichiabuccalis, Streptobacillus moniliformis, Sneathia sanguinegens and Caviibacter abscessus. Chemotaxonomic and physiological data of strain NCIMB 703044t were in congruence with closely related members of the family Leptotrichiaceae, represented by highly similar enzyme profiles and fatty acid patterns. MALDI-TOF MS analysis was capable to clearly discriminate strain NCIMB 703044T from all currently described taxa of the family Leptotrichiaceae. On the basis of these data we propose the novel taxon Oceanivirga salmonicida gen. nov. sp. nov. with the type strain AVG 2115T

  17. Growth inhibition of Aeromonas salmonicida and Yersinia ruckeri by disinfectants containing peracetic acid.

    PubMed

    Meinelt, Thomas; Phan, Thy-My; Behrens, Sascha; Wienke, Andreas; Pedersen, Lars-Flemming; Liu, Dibo; Straus, David L

    2015-04-01

    Peracetic acid (PAA) is a therapeutic agent used for disinfection in aquaculture, but it must be investigated thoroughly in order to mitigate diseases without harming the fish. Successful disinfectants (like PAA) should not leave dangerous residues in the environment in order to successfully contribute to sustainable aquaculture. The aim of our study was to compare the effectiveness of 6 commercial PAA products with different molecular PAA:H2O2 ratios to reduce bacterial growth of Aeromonas salmonicida and Yersinia ruckeri and to determine effective concentrations and exposure times. All products reduced colony-forming units (CFUs) of A. salmonicida and Y. ruckeri. Products with higher molecular PAA:H2O2 ratios inhibited growth better than products with lower molecular PAA:H2O2 ratios at the same PAA concentration; this indicates that H2O2 is not the driving force in the reduction of A. salmonicida and Y. ruckeri growth by PAA in vitro. The practical application of the products with high molecular PAA:H2O2 ratios should be prioritized if these pathogens are diagnosed. PMID:25850398

  18. Development and validation of a real-time PCR assay for the detection of Aeromonas salmonicida.

    PubMed

    Keeling, S E; Brosnahan, C L; Johnston, C; Wallis, R; Gudkovs, N; McDonald, W L

    2013-05-01

    A real-time PCR assay using a molecular beacon was developed and validated to detect the vapA (surface array protein) gene in the fish pathogen, Aeromonas salmonicida. The assay had 100% analytical specificity and analytical sensitivities of 5 ± 0 fg (DNA), 2.2 × 10(4) ± 1 × 10(4) CFU g(-1) (without enrichment) and 40 ± 10 CFU g(-1) (with enrichment) in kidney tissue. The assay was highly repeatable and proved to be robust following equivalency testing using a different real-time PCR platform. Following analytical validation, diagnostic specificity was determined using New Zealand farmed Chinook salmon, Oncorhynchus tshawytscha (Walbaum), (n = 750) and pink shubunkin, Carassius auratus (L.) (n = 157). The real-time PCR was run in parallel with culture and all fish tested were found to be negative by both methods for A. salmonicida, resulting in 100% diagnostic specificity (95% confidence interval). The molecular beacon real-time PCR system is specific, sensitive and a reproducible method for the detection of A. salmonicida. It can be used for diagnostic testing, health certification and active surveillance programmes. PMID:23121198

  19. Multiplex PCR for the detection of Piscirickettsia salmonis, Vibrio anguillarum, Aeromonas salmonicida and Streptococcus phocae in Chilean marine farms.

    PubMed

    Tapia-Cammas, D; Yañez, A; Arancibia, G; Toranzo, A E; Avendaño-Herrera, R

    2011-12-01

    A multiplex (m-)PCR-based protocol was designed for the simultaneous detection of the main marine bacterial pathogens in Chilean salmon farms: Streptococcus phocae, Aeromonas salmonicida, Vibrio anguillarum and Piscirickettsia salmonis. Each of the 4 oligonucleotide primer pairs exclusively amplified the target gene of the specific bacterial pathogen. The detection limit of the m-PCR using purified total bacterial DNA was 50 pg microl(-1) for V anguillarum, 500 fg microl(-1) for P. salmonis, and 5 pg microl(-1) for S. phocae and A. salmonicida. This corresponded to average limits in the m-PCR sensitivity of 3.69 x 10(5) CFU ml(-1) of V anguillarum, 1.26 x 10(4) CFU m(-1) of S. phocae, and 5.33 x 10(4) CFU ml(-1) of A. salmonicida, while the detection limits for the spiked fish tissues, regardless of the sample (spleen, kidney, liver or muscle) were 2.64 +/- 0.54 x 10(7) CFU g(-1) for V. anguillarum, 9.03 +/- 1.84 x 10(5) CFU g(-1) for S. phocae, 3.8 +/- 0.78 x 10(3) CFU mg(-1) for A. salmonicida and 100 P. salmonis cells. However, high amounts of DNA from 3 bacterial species had a reduction of -1 log-unit on the amplification sensitivity of S. phocae or A. salmonicida when these were present in lower concentration in the multiplex reaction. The assay described in this study is a rapid, sensitive and efficient tool to detect the presence of S. phocae, A. salmonicida, V. anguillarum and P. salmonis simultaneously from pure cultures and tissues from clinically diseased fish. Therefore, it may be a useful alternative to culture-based methods for the diagnosis of infections in fish obtained from Chilean salmon farms. PMID:22303630

  20. Historical record of Yersinia ruckeri and Aeromonas salmonicida among sea-run Atlantic salmon (Salmo salar) in the Penobscot River

    USGS Publications Warehouse

    Cipriano, R.C.; Coll, J.

    2005-01-01

    Despite restoration efforts, only about 2,000 Atlantic salmon (Salmo salar) salmon have annually returned to New England Rivers and more than 71% of these fish migrate to the Penobscot River alone. This report provides a historical compilation on the prevalence's of both Yersinia ruckeri, cause of enteric redmouth disease, and Aeromonas salmonicida, cause of furunculosis, among mature sea-run Atlantic salmon that returned to the Penobscot River from 1976 to 2003. Aeromonas salmonicida was detected in 28.6% and Yersinia ruckeri was detected among 50% of the yearly returns. Consequently, Atlantic salmon that return to the river are potential reservoirs of infection.

  1. Comparative evaluation of infection methods and environmental factors on challenge success: Aeromonas salmonicida infection in vaccinated rainbow trout.

    PubMed

    Chettri, Jiwan Kumar; Skov, Jakob; Jaafar, Rzgar M; Krossøy, Bjørn; Kania, Per W; Dalsgaard, Inger; Buchmann, Kurt

    2015-06-01

    When testing vaccine-induced protection an effective and reliable challenge method is a basic requirement and we here present a comparative study on different challenge methods used for infection of rainbow trout Oncorhynchus mykiss with Aeromonas salmonicida, a bacterial pathogen eliciting furunculosis. Fish were vaccinated with three different adjuvanted trivalent vaccines containing formalin killed A. salmonicida, Vibrio anguillarum O1 and O2a. These were 1) the commercial vaccine Alpha Ject 3000, 2) an experimental vaccine with water in paraffin oil adjuvant, 3) an experimental vaccine with water in paraffin oil in water adjuvant. Fish were then exposed to A. salmonicida challenge using i.p. injection, cohabitation in freshwater, cohabitation in saltwater (15 ppt) or combined fresh/saltwater cohabitation. Cohabitation reflects a more natural infection mode and was shown to give better differentiation of vaccine types compared to i.p. injection of live bacteria. The latter infection mode is less successful probably due to the intra-abdominal inflammatory reactions (characterized in this study according to the Speilberg scale) induced by i.p. vaccination whereby injected live bacteria more effectively become inactivated at the site of injection. Compared to cohabitation in freshwater, cohabitation in saltwater was less efficient probably due to reduced survivability of A. salmonicida in saltwater, which was also experimentally verified in vitro. PMID:25783001

  2. Survival of two bacterial fish pathogens (Aeromonas salmonicida and the Enteric Redmouth Bacterium) in ozonated, chlorinated, and untreated waters

    USGS Publications Warehouse

    Wedemeyer, Gary A.; Nelson, Nancy C.

    1977-01-01

    Ozone and chlorine inactivation curves were determined in three water types at 20 °C for the destruction of the fish pathogens Aeromonas salmonicida, the etiologic agent of furunculosis, and the enteric redmouth bacterium (ERM). In phosphate-buffered distilled water, 0.01 mg/ℓ ozone inactivated 103 cells/ml of ERM and A. salmonicida in 1/2 and 10 min, respectively. Chlorine at this concentration had little effect on either pathogen and a residual of at least 0.05 mg/ℓ was needed to achieve a complete kill within a 10-min contact time. In soft lake water (30 mg/ℓ as CaCO3) a chlorine residual of 0.1 mg/ℓ rapidly  inactivated A. salmonicida and ERM but in hard water (120 mg/ℓ) A. salmonicida was more resistant and 0.2 mg/ℓ chlorine was required. Ozonation of the two lake waters at 90 mg O3∙h−1∙ℓ−1 (equivalent to a 0.01 mg/ℓ residual in ozone demand-free water) was required to destroy both pathogens within 10 min.In untreated soft lake water 103 cells/ml of A. salmonicida survived only 2 days, while the ERM bacterium (103 cells/ml) survived even after 20 day s in soft and hard untreated lake waters.

  3. Development of a loop-mediated isothermal amplification assay for rapid detection of Nocardia salmonicida, the causative agent of nocardiosis in fish.

    PubMed

    Xia, Liqun; Zhang, Honglian; Lu, Yishan; Cai, Jia; Wang, Bei; Jian, Jichang

    2015-03-01

    Nocardia salmonicida is one of the main pathogens of fish nocardiosis. The purpose of this study was to build a loop-mediated isothermal amplification (LAMP) method for the rapid and sensitive detection of N. salmonicida. A set of four primers were designed from the 16S-23S rRNA intergenic spacer region of N. salmonicida, and conditions for LAMP were optimized as incubating all the reagents for 60 min at 64°C. LAMP products were judged with agar gel electrophoresis as well as with the naked eye after the addition of SYBR Green I. Results showed the sensitivity of the LAMP assay was 1.68 × 10(3) CFU/ml (16.8 CFU per reaction) and 10-fold higher than that of PCR. The LAMP method was also effectively applied to detect N. salmonicida in diseased fish samples, and it may potentially facilitate the surveillance and early diagnosis of fish nocardiosis. PMID:25262681

  4. Crystallization and preliminary X-ray diffraction analysis of a cold-adapted catalase from Vibrio salmonicida

    SciTech Connect

    Riise, Ellen Kristin; Lorentzen, Marit Sjo; Helland, Ronny; Willassen, Nils Peder

    2006-01-01

    Monoclinic (P2{sub 1}) crystals of a His-tagged form of V. salmonicida catalase without cofactor diffract X-rays to 1.96 Å. Catalase (EC 1.11.1.6) catalyses the breakdown of hydrogen peroxide to water and molecular oxygen. Recombinant Vibrio salmonicida catalase (VSC) possesses typical cold-adapted features, with higher catalytic efficiency, lower thermal stability and a lower temperature optimum than its mesophilic counterpart from Proteus mirabilis. Crystals of VSC were produced by the hanging-drop vapour-diffusion method using ammonium sulfate as precipitant. The crystals belong to the monoclinic space group P2{sub 1}, with unit-cell parameters a = 98.15, b = 217.76, c = 99.28 Å, β = 110.48°. Data were collected to 1.96 Å and a molecular-replacement solution was found with eight molecules in the asymmetric unit.

  5. Virulence and persistence of rough and smooth forms of Aeromonas salmonicida inoculated into coho salmon (Oncorhynchus kisutch)

    USGS Publications Warehouse

    Anderson, Douglas P.

    1972-01-01

    Virulent isolates of Aeromonas salmonicida showed a majority of smooth colonies, while the attenuated isolates displayed mostly rough colonies. A lesion occurred at the site of inoculation when one of the rough forms was inoculated into yearling coho salmon, but few mortalities were recorded even though the rough forms were readily recovered from both the lesion and the kidney. The fish inoculated with the same dosage of smooth forms all died within 96 hr of inoculation.

  6. Immunization of pacific salmon: comparison of intraperitoneal injection and hyperosmotic infiltration of Vibrio anguillarum and Aeromonas salmonicida bacterins

    USGS Publications Warehouse

    Antipa, Ross; Amend, Donald F.

    1977-01-01

    Two methods of immunizing fish, intraperitoneal (i.p.) injection and hyperosmotic infiltration, were compared for control of vibriosis and furunculosis in pen-reared coho salmon (Oncorhynchus kisutch) and chinook salmon (O. tshawytscha). Both methods provided significant protection against vibriosis under field test conditions. In coho salmon, hyperosmotic infiltration provided the best protection and fastest rise in antibody titer of seven treatments tested. In chinook salmon, hyperosmotic infiltration of Vibrio anguillarum and Aeromonas salmonicida vaccines resulted in 83.3% survival in comparison with 28.7% survival in controls. Both i.p. injection and hyperosmotic infiltration of V. anguillarum and A. salmonicida bacterins resulted in production of serum antibodies specific for each respective pathogen. Vaccination with bivalent V. anguillarum–A.salmonicida vaccines produced antibodies to both pathogens, and provided protection against vibriosis. Growth rates of vaccinated coho salmon were not significantly different from controls.

  7. Adverse and long-term protective effects following oil-adjuvanted vaccination against Aeromonas salmonicida in rainbow trout.

    PubMed

    Villumsen, Kasper Rømer; Koppang, Erling Olaf; Raida, Martin Kristian

    2015-01-01

    Prophylactic measures against Aeromonas salmonicida subsp. salmonicida, the causative agent of furunculosis, have been an active field of research for decades, with studies mainly focused on Atlantic salmon (Salmo salar). In the present study we have examined the protective and adverse effects of mineral oil-adjuvanted injection vaccines on rainbow trout (Oncorhynchus mykiss). A commercial vaccine and an experimental auto vaccine, as well as their respective adjuvant formulations alone were used to evaluate their individual effects, both prior to and during an experimental waterborne infection challenge. Macro- and microscopic examination revealed signs of vaccine-induced adverse effects from 10 weeks to 14 months post vaccination. Both vaccines induced statistically significant protection during the experimental challenge (P=0.018 for both vaccines), as well as significantly elevated levels of specific circulating antibodies prior to and during the experimental challenge when compared to an unvaccinated control group. During the early, critical time points of the infection, both vaccines appeared to protect against pathological changes to the liver and spleen, which provides a probable explanation for the reduced mortality seen in the vaccinated groups. A significant correlation was found between the level of A. salmonicida-specific antibodies measured prior to challenge and the endpoint survival of each group after the experimental infection, and furthermore, the levels of these antibodies remained elevated for at least 14 months post vaccination. PMID:25281580

  8. Probiotic properties of Lactobacillus and Bifidobacterium strains isolated from porcine gastrointestinal tract.

    PubMed

    Kim, Pyoung Il; Jung, Min Young; Chang, Young-Hyo; Kim, Saehun; Kim, Seong-Jae; Park, Yong-Ha

    2007-04-01

    One strain of Lactobacillus salivarius, two strains of Lactobacillus reuteri and Lactobacillus amylovorus, and two strains of Bifidobacterium thermacidophilum with antagonistic effect against Clostridium perfringens were isolated from porcine gastrointestinal tract. Isolates were assayed for their ability to survive in synthetic gastric juice at pH 2.5 and were examined for their ability to grow on agar plate containing porcine bile extract. There was a large variation in the survival of the isolates in gastric juice and growth in the medium containing 0.3% (w/v) bile. L. salivarius G11 and L. amylovorus S6 adhered to the HT-29 epithelial cell line. Cell-free supernatant of L. amylovorus S6 showed higher antagonistic activity as effective as the antibiotics such as neomycin, chlortetracycline, and oxytetracycline against bacterial pathogens including C. perfringens, Salmonella typhimurium, Staphylococcus aureus, Vibrio cholerae, Edwardsiella tarda, and Aeromonas salmonicida subsp. salmonicida. PMID:17136367

  9. Aeromonas salmonicida infection levels in pre- and post-stocked cleaner fish assessed by culture and an amended qPCR assay.

    PubMed

    Gulla, S; Duodu, S; Nilsen, A; Fossen, I; Colquhoun, D J

    2016-07-01

    Due to increasing resistance to chemical therapeutants, the use of 'cleaner fish' (primarily wrasse, Labridae, species) has become popular in European salmon farming for biocontrol of the salmon louse, Lepeophtheirus salmonis (Krøyer). While being efficient de-licers, cleaner fish mortality levels in salmon cages are commonly high, and systemic bacterial infections constitute a major problem. Atypical furunculosis, caused by Aeromonas salmonicida A-layer types V and VI, is among the most common diagnoses reached in clinical investigations. A previously described real-time PCR (qPCR), targeting the A. salmonicida A-layer gene (vapA), was modified and validated for specific and sensitive detection of all presently recognized A-layer types of this bacterium. Before stocking and during episodes of increased mortality in salmon cages, cleaner fish (primarily wild-caught wrasse) were sampled and screened for A. salmonicida by qPCR and culture. Culture indicated that systemic bacterial infections are mainly contracted after salmon farm stocking, and qPCR revealed A. salmonicida prevalences of approximately 4% and 68% in pre- and post-stocked cleaner fish, respectively. This underpins A. salmonicida's relevance as a contributing factor to cleaner fish mortality and emphasizes the need for implementation of preventive measures (e.g. vaccination) if current levels of cleaner fish use are to be continued or expanded. PMID:26514414

  10. Effect of a phytogenic feed additive on the susceptibility of Onchorhynchus mykiss to Aeromonas salmonicida.

    PubMed

    Menanteau-Ledouble, S; Krauss, I; Santos, G; Fibi, S; Weber, B; El-Matbouli, M

    2015-06-29

    In recent years, feed additives have increasingly been adopted by the aquaculture industry. These supplements not only offer an alternative to antibiotics but have also been linked to enhanced growth performance. However, the literature is still limited and provides contradictory information on their effectiveness. This is mainly due to the wide variety of available products and their complex mechanisms of action. Phytogenic feed additives have been shown to have antimicrobial effects and can improve growth performance. In the present study, we investigated the susceptibility of several fish pathogenic bacteria to a phytogenic essential oil product in vitro. In addition, we determined the protective effect of a commercial phytogenic feed additive containing oregano, anis and citrus oils on the resistance of rainbow trout Oncorhynchus mykiss to infection by Aeromonas salmonicida. The bacterium was administered through 3 different routes: intra-peritoneal injection, immersion in a bacterial solution and cohabitation with infected fish. Mortality rates were significantly lower in infected rainbow trout that had received the feed additive: the overall mortality rate across all routes of infection was 18% in fish fed a diet containing the additive compared to 37% in fish that received unsupplemented feed. The route of infection also significantly impacted mortality, with average mortality rates of 60, 17.5 and 5% for intra-peritoneal injection, immersion and cohabitation, respectively. In general, fish were better protected against infection by immersion than infection by injection. PMID:26119300

  11. Ulcer disease prophylaxis in koi carp by bath immersion with chicken egg yolk containing anti-Aeromonas salmonicida IgY.

    PubMed

    Gan, Hongjian; He, Haiwen; Sato, Atsushi; Hatta, Hajime; Nakao, Miki; Somamoto, Tomonori

    2015-04-01

    Ulcer disease, caused by atypical Aeromonas salmonicida, is a serious concern in ornamental koi carp, because it induces skin ulceration, disfiguring ornamental fish and causing economic loses. The present study aimed to establish a novel prophylaxis with chicken egg yolk immunoglobulin, IgY, against ulcer disease and to assess its feasibility in the ornamental fish industry. Addition of egg yolk powder containing anti-A. salmonicida IgY to rearing water provided significant protection against an A. salmonicida bath infection, whereas administration of non-specific IgY did not. Consecutive immersion of fish into rearing water containing specific IgY completely prevented ulcer disease resulting from cohabitation infection, indicating that this prophylaxis could prevent infection from such type of contact. Thus, passive immunization induced by immersing fish into aquarium water containing specific IgY is a prospective prophylaxis against diseases caused by pathogens that invade the skin and gills. PMID:25687817

  12. The influence of dietary β-glucan, PAMP exposure and Aeromonas salmonicida on apoptosis modulation in common carp (Cyprinus carpio).

    PubMed

    Miest, J J; Falco, A; Pionnier, N P M; Frost, P; Irnazarow, I; Williams, G T; Hoole, D

    2012-10-01

    The association between β-glucan (MacroGard®) supplemented feed and apoptosis in immune-related organs of common carp (Cyprinus carpio) was studied using fluorescence microscopy and real-time PCR. In addition the effect of Aeromonas salmonicida, LPS and Poly(I:C) injections on this relationship was evaluated. Whilst acridine orange staining revealed that apoptosis levels were independent of MacroGard® and LPS/Poly(I:C) administration or their combination, it was shown that injection with A. salmonicida increased the percentage of apoptotic cells irrespective of the feeding regime. It was apparent that in all the treatments gene expression profiles displayed organ and time dependency. For example no effect was observed at 7 days of MacroGard® administration while 25 days of feeding led to increased iNOS expression and differential up-regulation of anti- or pro-apoptotic genes depending on organ. This may indicate differences in NO sensitivity. MacroGard® also led to an elevation of pro- as well as anti-apoptotic genes in LPS or Poly(I:C) injected fish, while LPS/Poly(I:C) alone had little effect. A. salmonicida caused enhanced iNOS expression and it is possible that the type of apoptosis pathway induced is organ dependent as Caspase 9 is induced in mid-gut but not in pronephros. These results indicate that MacroGard® feeding alone or in combination with other pathogenic factors did not induce significant apoptosis in immune organs. PMID:23198291

  13. Application of an immunoaffinity-based preconcentration method for mass spectrometric analysis of the O-chain polysaccharide of Aeromonas salmonicida from in vitro- and in vivo-grown cells.

    PubMed

    Wang, Zhan; Liu, Xin; Garduño, Elizabeth; Garduño, Rafael A; Li, Jianjun; Altman, Eleonora

    2009-06-01

    In this study, application of magnetic beads (Dynabeads) coated with Aeromonas salmonicida lipopolysaccharide-specific polyclonal antisera to MS-based characterization of bacterial lipopolysaccharides has been evaluated. The results showed that the affinity-based preconcentration strategy resulted in at least a 100-fold increase in the detection of sensitivity, affording direct capillary electrophoresis (CE)-MS analysis of A. salmonicida lipopolysaccharide O-chain polysaccharide from in vitro-cultured cells. Subsequent CE-MS analysis of in vivo-grown cells of A. salmonicida confirmed significant changes in the structure of the lipopolysaccharide O-chain polysaccharide as a result of in vivo cultivation. PMID:19456871

  14. Recovery of a fish pathogenic bacterium, Aeromonas salmonicida, from ebonyshell mussels Fusconaia ebena using nondestructive sample collection procedures

    USGS Publications Warehouse

    Starliper, C.E.

    2008-01-01

    Refugia are increasingly being used to maintain and propagate imperiled freshwater mussels for future population augmentations. Success for this endeavor is dependent on good husbandry, including a holistic program of resource health management. A significant aspect to optimal health is the prevention or control of infectious diseases. Describing and monitoring pathogens and diseases in mussels involves examination of tissues or samples collected from an appropriate number of individuals that satisfies a certain confidence level for expected prevalences of infections. In the present study, ebonyshell mussels Fusconaia ebena were infected with a fish pathogenic bacterium, Aeromonas salmonicida, through their cohabitation with diseased brook trout Salvelinus fontinalis. At a 100% prevalence of infection, the F. ebena were removed from the cohabitation tank to clean tanks that were supplied with pathogen-free water, which initiated their depuration of A. salmonicida. Three samples (nondestructive fluid, mantle, hemolymph) collected using nondestructive procedures were compared with fluids and soft tissue homogenates collected after sacrificing the mussels for recovery of the bacterium during this period of depuration. Nondestructive sample collections, especially ND fluid, provide a comparable alternative to sacrificing mussels to determine pathogen status.

  15. The adjuvant effect of low frequency ultrasound when applied with an inactivated Aeromonas salmonicida vaccine to rainbow trout (Oncorhynchus mykiss).

    PubMed

    Cobo Labarca, Cristóbal; Makhutu, Mary; Lumsdon, Alexander E; Thompson, Kim D; Jung, Rainer; Kloas, Werner; Knopf, Klaus

    2015-03-10

    Vaccine adjuvants are classified according to their properties of either inducing the persistence of antigens within the animal after immunisation and/or activation of the animal's immune response. The adjuvant effect of low intensity low frequency sonophoresis (LFS) was tested in rainbow trout using an Aeromonas salmonicida bacterin vaccine administered by immersion vaccination using LFS at 37 kHz. The adjuvant effect obtained with LFS was compared with that of normal immersion or intraperitoneal injection vaccination. Quantitative PCR was used to measure bacterial DNA in vaccinated fish up to 35 days post-vaccination, while RT-qPCR was used to assess gene expression during the early and late immune response post-vaccination. Results showed that antigen uptake in the gills was significantly higher in the group exposed to low intensity LFS compared to the other two vaccination groups 15 min post-vaccination, but this initially high uptake did not persist over the rest of the experiment. In the kidney, by comparison, the vast majority of the samples analysed did not show the presence or persistence of the bacterin. Showing that the route of vaccine uptake using the A. salmonicida bacterin, does not influence the persistence of the bacterin in the gills or the kidney. On the other hand, LFS induced a higher inflammatory response and T-helper cell activation, characterized by a significant up-regulation of interleukin-8 (IL-8), IL-1ß and CD-4, respectively. The expression of Ig-M, Ig-T and Ig-D was up-regulated in gills (being significant for Ig-M), but not in the spleen and kidney of the sonicated group. Conversely, Ig-M was up-regulated in the spleen of the non-sonicated groups, but not in the sonicated group. This highlights the ability of ultrasound to enhance mucosal immunity. It remains to be established whether the up-regulation of Ig-M in gills would be sufficient to offer protection in fish infected with A. salmonicida. PMID:25613719

  16. Reduced inflammatory response to Aeromonas salmonicida infection in common carp (Cyprinus carpio L.) fed with β-glucan supplements.

    PubMed

    Falco, Alberto; Frost, Patrick; Miest, Joanna; Pionnier, Nicolas; Irnazarow, Ilgiz; Hoole, David

    2012-06-01

    The objective of the present study was to determine the action of β-glucans as feed additives on the gene expression profile of some inflammatory-related cytokines from common carp (Cyprinus carpio L.) during the early stages of a non-lethal bacterial infection with Aeromonas salmonicida. β-glucan (MacroGard(®)), was administered daily to carp (6 mg per kg body weight) in the form of supplemented commercial food pellets for 14 days prior to infection. Control and treated fish were then intraperitoneally injected with PBS or 4×10(8) bacteria per fish and were sampled at time 0 and 6h, 12h, 1 day, 3 days and 5 days post-injection. Head kidney and gut were collected and the gene expression patterns for tnfα1, tnfα2, il1β, il6 and il10 were analyzed by quantitative PCR. Results obtained showed that treatment with β-glucans generally down-regulated the expression of all measured genes when compared to their corresponding controls. After injection, highest changes in the gene expression levels were obtained at 6h; particularly, in head kidney there was higher up-regulation of tnfa1 and tnfa2 in infected fish fed β-glucans in comparison to control feed; however, in gut there was a significant down-regulation of tnfα1, tnfα2, il1β and il6 in infected fish fed β-glucans. Analysis of carp specific antibodies against A. salmonicida 30 days after injection revealed their levels were reduced in the infected β-glucan group. In conclusion, a diet supplemented with β-glucan (MacroGard(®)) reduced the gene expression levels of some inflammation-related cytokines in common carp. Such a response appears to be dependent of organ studied and therefore the immunostimulant may be preventing an acute and potential dangerous response in gut, whilst enhancing the inflammatory response in head kidney when exposed to A. salmonicida. PMID:22406448

  17. Optimization of nested polymerase chain reaction assays for identification of Aeromonas salmonicida, Yersinia ruckeri and Flavobacterium psychrophilum

    USGS Publications Warehouse

    Taylor, P.W.; Winton, J.R.

    2002-01-01

    Nested polymerase chain reaction (PCR) assays were developed using first-round primers complementary to highly conserved regions within the bacterial 16S ribosomal RNA (rRNA) gene (universal eubacterial primers) and second-round primers specific for sequences within the 16S rRNA genes of Aeromonas salmonicida, Yersinia ruckeri, andFlavobacterium psychrophilum. Following optimization of the MgCl2 concentration and primer annealing temperature, PCR employing the universal eubacterial primers was used to amplify a 1,500-base-pair (bp) product visible in agarose gels stained with ethidium bromide. The calculated detection limit of this single-round assay was less than 1.4 × 104 colony-forming units (CFU) per reaction for all bacterial species tested. Single-round PCR using primer sets specific for A. salmonicida, Y. ruckeri, and F. psychrophilumamplified bands of 271, 575, and 1,100 bp, respectively, with detection limits of less than 1.4 × 104, 1.4 × 105, and 1.4 × 105 CFU per reaction. Using the universal eubacterial primers in the first round and the species-specific primer sets in the second round of nested PCR assays improved the detection ability by approximately four orders of magnitude to fewer than 14 CFU per sample for each of the three bacterial species. Such nested assays could be adapted to a wide variety of bacterial fish pathogens for which 16S sequences are available.

  18. Toll-like receptors in maraena whitefish: Evolutionary relationship among salmonid fishes and patterns of response to Aeromonas salmonicida.

    PubMed

    Altmann, Simone; Korytář, Tomáš; Kaczmarzyk, Danuta; Nipkow, Mareen; Kühn, Carsten; Goldammer, Tom; Rebl, Alexander

    2016-07-01

    Toll-like receptors (TLRs) interact directly with particular pathogenic structures and are thus highly important to innate immunity. The present manuscript characterises a suite of 14 TLRs in maraena whitefish (Coregonus maraena), a salmonid species with increasing importance for aquaculture. Whitefish TLRs were structurally and evolutionary analysed. The results revealed a close relationship with TLRs from salmonid fish species rainbow trout and Atlantic salmon. Profiling the baseline expression of TLR genes in whitefish indicated that mainly members of the TLR11 family were highly expressed across all investigated tissues. A stimulation model with inactivated Aeromonas salmonicida was used to induce inflammation in the peritoneal cavity of whitefish. This bacterial challenge induced the expression of pro-inflammatory cytokine genes and evoked a strong influx of granulated cells of myeloid origin into the peritoneal cavity. As a likely consequence, the abundance of TLR-encoding transcripts increased moderately in peritoneal cells, with the highest levels of transcripts encoding non-mammalian TLR22a and a soluble TLR5 variant. In the course of inflammation, the proportion of granulated cells increased in peripheral blood accompanied by elevated TLR copy numbers in spleen and simultaneously reduced TLR copy numbers in head kidney at day 3 post-stimulation. Altogether, the present study provides in-vivo evidence for relatively modest TLR response patterns, but marked trafficking of myeloid cells as an immunophysiological consequence of A. salmonicida inflammation in whitefish. The present results contribute to improved understanding of the host-pathogen interaction in salmonid fish. PMID:27131902

  19. Differences in detection of Aeromonas salmonicida in covertly infected salmonid fishes by the stress-inducible furunculosis test and culture-based assays

    USGS Publications Warehouse

    Cipriano, R.C.; Ford, L.A.; Smith, D.R.; Schachte, J.H.; Petrie, C.J.

    1997-01-01

    Accurate detection of Aeromonas salmonicida subsp. salmonicida (the cause of furunculosis disease) in covertly infected salmonids is difficult and is a cause of concern for those involved in fish health inspection and resource management programs. In this study, we examined populations of brook trout Salvelinus fontinalis, Atlantic salmon Salmo salar, and lake trout Salvelinus namaycush that previously sustained natural episodes of furunculosis. Consequently, the sampled fish were presumed to harbor latent infections. Mucus, gill, liver, kidney, heart, spleen, and intestine samples (N = 100 fish per group sampled) were processed and examined by (1) direct dilution counts and (2) quadrant streaking after a 48-h pre-enrichment in trypticase soy broth (TSB). Another subsample of fish from each group was then subjected to stress-inducible furunculosis tests. Stress tests detected A. salmonicida in three of four groups of fish that were examined whereas the pathogen was detected in only two of the groups analyzed with culture-based assays. Although pre-enrichment in TSB enhanced detection within internal sampling sites including the liver, heart, spleen, and kidney, enrichment did not enhance detection from mucus, gill, or intestinal samples.

  20. Bactericidal activity of juvenile chinook salmon macrophages against Aeromonas salmonicida after exposure to live or heat-killed Renibacterium salmoninarum or to soluble proteins produced by R. salmoninarum

    USGS Publications Warehouse

    Siegel, D.C.; Congleton, J.L.

    1997-01-01

    Macrophages isolated from the anterior kidney of juvenile chinook salmon Oncorhynchus tshawytscha in 96-well microtiter plates were exposed for 72 h to 0, 105, or 106 live or heat-killed Renibacterium salmoninarum cells per well or to 0, 0.1, 1.0, or 10 ??g/mL of R. salmoninarum soluble proteins. After treatment, the bactericidal activity of the macrophages against Aerornonas salmonicida was determined by a colorimetric assay based on the reduction of the tetrazolium dye MTT to formazan by viable bacteria. The MTT assay was modified to allow estimation of the percentage of bacteria killed by reference to a standard curve relating the number of bacteria added to microtiter wells to absorbance by formazan at 600 nm. The live and heat-killed R. salmoninarum treatments significantly (P < 0.001) increased killing of A. salmonicida by chinook salmon macrophages. In each of the five trials, significantly (P < 0.05) greater increases in killing occurred after exposure to 105 R. salmoninarum cells than to 106 R. salmoninarum cells per well. In contrast, treatment of macrophages with 10 ??g/mL R. salmoninarum soluble proteins significantly (P < 0.001) decreased killing of A. salmonicida, but treatment with lower doses did not. These results show that the bactericidal activity of chinook salmon macrophages is stimulated by exposure to R. salmoninarum cells at lower dose levels but inhibited by exposure to R. salmoninarum cells or soluble proteins at higher dose levels.

  1. Transcription Factor T-Bet in Atlantic Salmon: Characterization and Gene Expression in Mucosal Tissues during Aeromonas Salmonicida Infection

    PubMed Central

    Kumari, Jaya; Zhang, Zuobing; Swain, Trilochan; Chi, Heng; Niu, Cuijuan; Bøgwald, Jarl; Dalmo, Roy Ambli

    2015-01-01

    The T-box transcription factor T-bet is expressed in a number of hematopoietic cell types in mammals and plays an essential role in the lineage determination of Th1 T-helper cells and is considered as an essential feature for both innate and adaptive immune responses in higher vertebrates. In the present study, we have identified and characterized the full-length Atlantic salmon T-bet cDNA (3502 bp). The putative primary structure of the polypeptide deduced from the cDNA sequence contained 612 aa, which possessed a T-box DNA binding domain. Phylogenetic study and gene synteny revealed it is as a homolog to mammalian T-bet. Quantitative PCR analysis of different tissues in healthy fish showed that salmon T-bet gene was highly expressed in spleen, followed by head kidney, and was expressed in intestine, skin, and liver at lower levels. Moreover, the time-dependent expression profile of T-bet, interferon gamma (IFNγ), interleukin-22 (IL-22), and natural killer enhancement factor in mucosal tissues during water-borne infection with live Aeromonas salmonicida, indicated the involvement of T-bet in mucosal immune response in Atlantic salmon. PMID:26217339

  2. Effects of dietary linseed oil on innate immune system of Eurasian perch and disease resistance after exposure to Aeromonas salmonicida achromogen.

    PubMed

    Geay, F; Mellery, J; Tinti, E; Douxfils, J; Larondelle, Y; Mandiki, S N M; Kestemont, P

    2015-12-01

    This study was designated to investigate the effects of dietary fish oil (FO diet) replacement by linseed oil (LO diet) on regulation of immune response and disease resistance in Eurasian perch (Perca fluviatilis). A control diet containing fish oil (FO = cod liver oil) and characterized by high levels of n-3 high LC-PUFA (6% EPA, 7.5% of total fatty acids (FAs)) was compared to linseed oil diet (LO diet) composed of low LC-PUFA contents (1% EPA, 2.3% DHA of total FAs) but high C18 fatty acids levels. The experiment was conducted in quadruplicate groups of 80 fish each. After 10 weeks of feeding, the innate immune status was evaluated in various organs (liver, spleen, and head-kidney) (feeding condition). Two days later, a bacterial challenge was performed on fish from 2 rearing conditions: fish infected with Aeromonas salmonicida (bacteria condition) and fish injected with sterile medium but maintained in the same flow system that fish challenged with bacteria (sentinel condition). Three days after injection of bacteria, a significant decrease of lymphocyte, thrombocyte and basophil populations was observed while neutrophils were not affected. In addition, plasma lysozyme activity and reactive oxygen species production in kidney significantly increased in fish challenged with A. salmonicida while the plasma alternative complement pathway activity was not affected. Increase of plasma lysozyme activity as well as reactive oxygen species production in spleen and kidney of sentinel fish suggest that these immune defenses can also be activated, but at lower bacteria concentration than infected fish. No differences in leucocyte populations, plasma lysozyme and alternative complement pathway activities were observed between dietary treatments. Similarly, expression of genes related to eicosanoid synthesis in liver were not affected by the dietary oil source but were strongly stimulated in fish challenged with A. salmonicida. These findings demonstrated that the use of

  3. Enhanced Aeromonas salmonicida bacterin uptake and side effects caused by low frequency sonophoresis in rainbow trout (Oncorhynchus mykiss).

    PubMed

    Cobo, Cristóbal; Makosch, Katarzyna; Jung, Rainer; Kohlmann, Klaus; Knopf, Klaus

    2014-02-01

    Low frequency sonophoresis (LFS) has been recognized as one of the most advanced technologies in transdermal delivery of substances, due to the modification of the stratum corneum lipid bilayer, in focal skin applications in mammals. Based on these findings, LFS has been suggested as a potential technology to be used for enhancement in immersion fish vaccination. In contrast to mammals where LFS is applied to discrete regions of the skin, in fish the whole individual needs to be exposed for practical purposes. The current study evaluated the impact of LFS at 37 kHz on the uptake of an Aeromonas salmonicida bacterin and side effects of the treatment in rainbow trout. Quantitative real time PCR (qPCR) and immunohistochemistry were used to examine the bacterin uptake into skin and gill tissue. Side effects were assessed by behavioural examination, histology and blood serum analysis. The sonication intensity of 171 mW/cm² was enough for increasing skin permeability, but caused heavy erratic swimming and gill haemorrhages. Sonication intensities as low as 105 mW/cm² did not modify skin permeability and enhanced the bacterin uptake into the gill tissue by factor 15 compared to conventional immersion. Following sonication, the gill permeability for the bacterin decreased after 20 min and 120 min by factor 3 and 2, respectively. However, during sonication, erratic swimming of the fish raised some concerns. Further reduction of the sonication intensity to 57 mW/cm² did not induce erratic swimming, and the bacterin uptake into the gill tissue was still increased by factor 3. In addition, a decreasing albumin-globulin ratio in the serum of the rainbow trout within 40 min revealed that LFS leads to an inflammatory response. Consequently, based on both increased bacterin uptake and the inflammatory response, low intensity LFS has the potential to enhance vaccine immunity without significant side effects. PMID:24378683

  4. Aeromonas salmonicida Infection Only Moderately Regulates Expression of Factors Contributing to Toll-Like Receptor Signaling but Massively Activates the Cellular and Humoral Branches of Innate Immunity in Rainbow Trout (Oncorhynchus mykiss).

    PubMed

    Brietzke, Andreas; Korytář, Tomáš; Jaros, Joanna; Köllner, Bernd; Goldammer, Tom; Seyfert, Hans-Martin; Rebl, Alexander

    2015-01-01

    Toll-like receptors (TLRs) are known to detect a defined spectrum of microbial structures. However, the knowledge about the specificity of teleost Tlr factors for distinct pathogens is limited so far. We measured baseline expression profiles of 18 tlr genes and associated signaling factors in four immune-relevant tissues of rainbow trout Oncorhynchus mykiss. Intraperitoneal injection of a lethal dose of Aeromonas salmonicida subsp. salmonicida induced highly increased levels of cytokine mRNAs during a 72-hour postinfection (hpi) period. In contrast, only the fish-specific tlr22a2 and the downstream factor irak1 featured clearly increased transcript levels, while the mRNA concentrations of many other tlr genes decreased. Flow cytometry quantified cell trafficking after infection indicating a dramatic influx of myeloid cells into the peritoneum and a belated low level immigration of lymphoid cells. T and B lymphocytes were differentiated with RT-qPCR revealing that B lymphocytes emigrated from and T lymphocytes immigrated into head kidney. In conclusion, no specific TLR can be singled out as a dominant receptor for A. salmonicida. The recruitment of cellular factors of innate immunity rather than induced expression of pathogen receptors is hence of key importance for mounting a first immune defense against invading A. salmonicida. PMID:26266270

  5. Endogenous mutagenesis by an insertion sequence element identifies Aeromonas salmonicida AbcA as an ATP-binding cassette transport protein required for biogenesis of smooth lipopolysaccharide.

    PubMed Central

    Chu, S; Noonan, B; Cavaignac, S; Trust, T J

    1995-01-01

    Analysis of an Aeromonas salmonicida A layer-deficient/O polysaccharide-deficient mutant carrying a Tn5 insertion in the structural gene for A protein (vapA) showed that the abcA gene immediately downstream of vapA had been interrupted by the endogenous insertion sequence element ISAS1. Immunoelectron microscopy showed that O polysaccharides did not accumulate at the inner membrane-cytoplasm interface of this mutant. abcA encodes an unusual protein; it carries both an amino-terminal ATP-binding cassette (ABC) domain showing high sequence similarity to ABC proteins implicated in the transport of certain capsular and O polysaccharides and a carboxyl-terminal potential DNA-binding domain, which distinguishes AbcA from other polysaccharide transport proteins in structural and evolutionary terms. The smooth lipopolysaccharide phenotype was restored by complementation with abcA but not by abcA carrying site-directed mutations in the sequence encoding the ATP-binding site of the protein. The genetic organization of the A. salmonicida ABC polysaccharide system differs from other bacteria. abcA also differs in apparently being required for both O-polysaccharide synthesis and in energizing the transport of O polysaccharides to the cell surface. Images Fig. 2 Fig. 3 Fig. 4 PMID:7777581

  6. Efficacy of an extract from garlic, Allium sativum, against infection with the furunculosis bacterium, Aeromonas salmonicida, in rainbow trout, Oncorhynchus mykiss

    USGS Publications Warehouse

    Breyer, Kate E.; Getchell, Rodman G.; Cornwell, Emily R.; Wooster, Gregory A.; Ketola, H. George; Bowser, Paul R.

    2015-01-01

    Juvenile rainbow trout, Oncorhynchus mykiss, were fed diets containing 0, 0.5, 1.0, and 2.0% of a garlic extract, challenged with a modified 50% lethal dose of Aeromonas salmonicida and monitored for 28 d. There were significant increases in survival of trout fed 0.5 and 1.0% garlic extract as compared to the control and 2.0% garlic extract groups. A target animal safety study was performed at varying increments using the target dose of 0.5% garlic extract at 0× (0% garlic extract), 1× (0.5% garlic extract), 3× (1.5% garlic extract), and 5× (2.5% garlic extract) for 3× (6 wk) the duration of the original study. There was a significant increase in the level of circulating lymphocytes and a significant decrease in the level of circulating monocytes. The latter correlated to an increased level of pigment-containing macrophage centers within the renal tissue as garlic extract dosing increased, denoting a potential deleterious inflammatory effect as macrophage infiltration became severe at the highest dose. These studies suggest that feeding low-dose (0.5% or 1.0%) garlic extract improves survivability in rainbow trout when challenged with A. salmonicida and appears safe; however, higher levels do not appear to be effective and may cause deleterious effects on health.

  7. Characterization of susceptibility and carrier status of burbot, Lota lota (L.), to IHNV, IPNV, Flavobacterium psychrophilum, Aeromonas salmonicida and Renibacterium salmoninarum.

    PubMed

    Polinski, M P; Fehringer, T R; Johnson, K A; Snekvik, K R; Lapatra, S E; Lafrentz, B R; Ireland, S C; Cain, K D

    2010-07-01

    In this study, susceptibility and potential carrier status of burbot, Lota lota, were assessed for five important fish pathogens. Burbot demonstrated susceptibility and elevated mortality following challenge with infectious haematopoietic necrosis virus (IHNV) by immersion and to Aeromonas salmonicida by intraperitoneal (i.p.) injection. IHNV persisted in fish for at least 28 days, whereas A. salmonicida was not re-isolated beyond 17 days post-challenge. In contrast, burbot appeared refractory to Flavobacterium psychrophilum following intramuscular (i.m.) injection and to infectious pancreatic necrosis virus (IPNV) by immersion. However, i.p injection of IPNV resulted in re-isolation of virus from fish for the duration of the 28 day challenge. Renibacterium salmoninarum appeared to induce an asymptomatic carrier state in burbot following i.p. injection, but overt manifestation of disease was not apparent. Viable bacteria persisted in fish for at least 41 days, and bacterial DNA isolated by diagnostic polymerase chain reaction was detected from burbot kidney tissue 90 days after initial exposure. This study is the first to investigate susceptibility of burbot to selected fish pathogens, and this information will aid in efforts to culture and manage this species. PMID:20367740

  8. A comparison of the distribution of extracellular proteins produced by the protease-secreting organism Aeromonas salmonicida during aerobic and anaerobic growth.

    PubMed

    Fyfe, L; Coleman, G; Munro, A L

    1986-01-01

    Aeromonas salmonicida was grown aerobically and anaerobically in supplemented 3% (w/v) tryptone soya broth medium for 24 h at 25 degrees C. Although the bacterial density achieved was 4.9 times higher in the aerobic culture, the exoprotein produced per unit of bacterial dry weight was only 1.9 times higher than in the anaerobic culture. However, the protease activity of the exoprotein showed a marked reduction anaerobically, being only one-tenth of that of the exoprotein produced aerobically. This finding was consistent with the differing SDS-PAGE patterns of the extracellular proteins from the two cultures, which also showed marked loss and reinforcement of other, as yet unidentified extracellular products. PMID:3322167

  9. Dietary β-glucan stimulate complement and C-reactive protein acute phase responses in common carp (Cyprinus carpio) during an Aeromonas salmonicida infection.

    PubMed

    Pionnier, Nicolas; Falco, Alberto; Miest, Joanna; Frost, Patrick; Irnazarow, Ilgiz; Shrive, Annette; Hoole, Dave

    2013-03-01

    The effect of β-glucans as feed additive on the profile of C-reactive protein (CRP) and complement acute phase responses was studied in common carp Cyprinus carpio after exposition to a bacterial infection with Aeromonas salmonicida. Carp were orally administered with β-glucan (MacroGard®) for 14 days with a daily β-glucan intake of 6 mg per kg body weight. Fish were then intraperitoneally injected with either PBS or 1 × 10⁸ bacteria per fish and sampled at time 0, 6, 12, 24, 48, 72, 96 and 120 h post-injection (p.i.) for serum and head kidney, liver and mid-gut tissues. CRP levels and complement activity were determined in the serum samples whilst the gene expression profiles of CRP and complement related genes (crp1, crp2, c1r/s, bf/c2, c3 and masp2) were analysed in the tissues by quantitative PCR. Results obtained showed that oral administration of β-glucan for 14 days significantly increased serum CRP levels up to 2 fold and serum alternative complement activity (ACP) up to 35 fold. The bacterial infection on its own (i.e. not combined with a β-glucan feeding) did have significant effects on complement response whilst CRP was not detectably induced during the carp acute phase reaction. However, the combination of the infection and the β-glucan feeding did show significant effects on both CRP and complement profiles with higher serum CRP levels and serum ACP activity in the β-glucan fed fish than in the control fed fish. In addition, a distinct organ and time dependent expression profile pattern was detected for all the selected genes: a peak of gene expression first occurred in the head kidney tissue (6 h p.i. or 12 h p.i.), then an up-regulation in the liver several hours later (24 h p.i.) and finally up- or down-regulations in the mid-gut at 24 h p.i. and 72 h p.i. In conclusion, the results of this study suggest that MacroGard® stimulated CRP and complement responses to A. salmonicida infection in common carp. PMID:23291104

  10. Lipopolysaccharides isolated from Aeromonas salmonicida and Vibrio anguillarum show quantitative but not qualitative differences in inflammatory outcome in Sparus aurata (Gilthead seabream).

    PubMed

    Boltaña, S; Tridico, R; Teles, M; Mackenzie, S; Tort, L

    2014-08-01

    In fish, the defence system recognises pathogenic microorganisms via pathogen recognition receptors (PRRs) that sense particular structures of the pathogens; the so-called pathogen associated molecular patterns (PAMPs) such as bacterial lipopolysaccharides (LPSs). The result of the PAMP-PRR interactions leads to complex and orchestrated immune responses. In this study, Sparus aurata (Gilthead seabream) were intraperitoneally injected with purified lipopolysaccharide (LPS) from Aeromonas salmonicida (As)- and Vibrio anguillarum (Va) (1 mg*Kgfish(-1)), both Gram negative bacteria responsible for vibriosis and furunculosis respectively, therefore causing an impact upon marine fish cultures. Head-kidney, intestine, spleen, liver and blood samples were collected at 3, 6, 12 and 24 h post-injection. Plasma levels of cortisol, prostaglandins and lactate were measured and were significantly increased after As-LPS and Va-LPS treatment. Furthermore, tissue-specific differences of the gene regulatory patterns were evident for each LPS. When monocyte/macrophage cell cultures were challenged with As-LPS and Va-LPS, the pro-inflammatory cytokine mRNA abundances present a similar pattern of response. However, As-LPS always triggered a stronger response concerning TNFα, IL1β and cyclooxygenase-2 (COX2) mRNA abundance as well as PGE2 levels in the supernatant. Overall, the results indicate that specific LPSs do not activate different pro-inflammatory responses and that the observed gene expression pattern is tissue and concentration dependent. PMID:24954838

  11. Steelhead trout Oncorhynchus mykiss metabolic rate is affected by dietary Aloe vera inclusion but not by mounting an immune response against formalin-killed Aeromonas salmonicida.

    PubMed

    Zanuzzo, F S; Urbinati, E C; Nash, G W; Gamperl, A K

    2015-07-01

    The oxygen consumption (MO2) of two groups of 10° C acclimated steelhead trout Oncorhynchus mykiss was measured for 72 h after they were given a 100 µl kg(-1) intraperitoneal injection of formalin-killed Aeromonas salmonicida (ASAL) or phosphate-buffered saline (PBS). In addition, plasma cortisol levels were measured in fish from both groups prior to, and 1 and 3 h after, they were given a 30 s net stress. The first group was fed an unaltered commercial diet for 4 weeks, whereas the second group was fed the same diet but with 0·5% (5 g kg(-1) ) Aloe vera powder added; A. vera has potential as an immunostimulant for use in aquaculture, but its effects on basal and acute phase response (APR)-related metabolic expenditures and stress physiology, are unknown. Injection of ASAL v. PBS had no measurable effect on the MO2 of O. mykiss indicating that the APR in this species is not associated with any net increase in energy expenditure. In contrast, incorporating 0·5% A. vera powder into the feed decreased routine metabolic rate by c. 8% in both injection groups and standard metabolic rate in the ASAL-injected group (by c. 4 mg O2 kg(-1) h(-1) ; 5%). Aloe vera fed fish had resting cortisol levels that were approximately half of those in fish on the commercial diet (c. 2·5 v. 5·0 ng ml(-1) ), but neither this difference nor those post-stress reached statistical significance (P > 0·05). PMID:26010230

  12. Natural Strain

    NASA Technical Reports Server (NTRS)

    Freed, Alan D.

    1997-01-01

    Logarithmic strain is the preferred measure of strain used by materials scientists, who typically refer to it as the "true strain." It was Nadai who gave it the name "natural strain," which seems more appropriate. This strain measure was proposed by Ludwik for the one-dimensional extension of a rod with length l. It was defined via the integral of dl/l to which Ludwik gave the name "effective specific strain." Today, it is after Hencky, who extended Ludwik's measure to three-dimensional analysis by defining logarithmic strains for the three principal directions.

  13. Natural Strain

    NASA Technical Reports Server (NTRS)

    Freed, Alan D.

    1995-01-01

    The purpose of this paper is to present a consistent and thorough development of the strain and strain-rate measures affiliated with Hencky. Natural measures for strain and strain-rate, as I refer to them, are first expressed in terms of of the fundamental body-metric tensors of Lodge. These strain and strain-rate measures are mixed tensor fields. They are mapped from the body to space in both the Eulerian and Lagrangian configurations, and then transformed from general to Cartesian fields. There they are compared with the various strain and strain-rate measures found in the literature. A simple Cartesian description for Hencky strain-rate in the Lagrangian state is obtained.

  14. Strain Gage

    NASA Technical Reports Server (NTRS)

    1995-01-01

    HITEC Corporation developed a strain gage application for DanteII, a mobile robot developed for NASA. The gage measured bending forces on the robot's legs and warned human controllers when acceptable forces were exceeded. HITEC further developed the technology for strain gage services in creating transducers out of "Indy" racing car suspension pushrods, NASCAR suspension components and components used in motion control.

  15. Hip flexor strain - aftercare

    MedlinePlus

    Pulled hip flexor - aftercare; Hip flexor injury - aftercare; Hip flexor tear - aftercare; Iliopsoas strain - aftercare; Strained iliopsoas muscle - aftercare; Torn iliopsoas muscle - aftercare; Psoas strain - aftercare

  16. High temperature strain gage apparent strain compensation

    NASA Technical Reports Server (NTRS)

    Holmes, Harlan K.; Moore, T. C., Sr.

    1992-01-01

    Once an installed strain gage is connected to a strain indicating device and the instrument is balanced, a subsequent change in temperature of the gage installation will generally produce a resistance change in the gage. This purely temperature-induced resistance will be registered by the indicating device as a strain and is referred to as 'apparent strain' to distinguish it from strain due to applied stress. One desirable technique for apparent strain compensation is to employ two identical gages with identical mounting procedures which are connected with a 'half bridge' configuration where gages see the same thermal environment but only one experiences a mechanical strain input. Their connection in adjacent arms of the bridge will then balance the thermally induced apparent strains and, in principle, only the mechanical strain remains. Two approaches that implement this technique are discussed.

  17. Geobacteraceae strains and methods

    DOEpatents

    Lovley, Derek R.; Nevin, Kelly P.; Yi, Hana

    2015-07-07

    Embodiments of the present invention provide a method of producing genetically modified strains of electricigenic microbes that are specifically adapted for the production of electrical current in microbial fuel cells, as well as strains produced by such methods and fuel cells using such strains. In preferred embodiments, the present invention provides genetically modified strains of Geobacter sulfurreducens and methods of using such strains.

  18. Strains and Sprains

    MedlinePlus

    ... Children's Sports Injuries Computer-Related Repetitive Stress Injuries Knee Injuries Broken Bones, Sprains, and Strains Strains and Sprains ... Pain Going to a Physical Therapist Hamstring Strain Knee Injuries Sports and Exercise Safety Dealing With Sports Injuries ...

  19. Muscle strain (image)

    MedlinePlus

    A muscle strain is the stretching or tearing of muscle fibers. A muscle strain can be caused by sports, exercise, a ... something that is too heavy. Symptoms of a muscle strain include pain, tightness, swelling, tenderness, and the ...

  20. Muscle strain treatment

    MedlinePlus

    Treatment - muscle strain ... Question: How do you treat a muscle strain ? Answer: Rest the strained muscle and apply ice for the first few days after the injury. Anti-inflammatory medicines or acetaminophen ( ...

  1. Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.

    PubMed

    Peiren, Jindrich; Buyse, Joke; De Vos, Paul; Lang, Elke; Clermont, Dominique; Hamon, Sylviane; Bégaud, Evelyne; Bizet, Chantal; Pascual, Javier; Ruvira, María A; Macián, M Carmen; Arahal, David R

    2015-04-01

    The objective of this study is to improve the viability after freeze-drying and during storage of delicate or recalcitrant strains safeguarded at biological resource centers. To achieve this objective, a joint experimental strategy was established among the different involved partner collections of the EMbaRC project ( www.embarc.eu ). Five bacterial strains considered as recalcitrant to freeze-drying were subjected to a standardized freeze-drying protocol and to seven agreed protocol variants. Viability of these strains was determined before and after freeze-drying (within 1 week, after 6 and 12 months, and after accelerated storage) for each of the protocols. Furthermore, strains were exchanged between partners to perform experiments with different freeze-dryer-dependent parameters. Of all tested variables, choice of the lyoprotectant had the biggest impact on viability after freeze-drying and during storage. For nearly all tested strains, skim milk as lyoprotectant resulted in lowest viability after freeze-drying and storage. On the other hand, best freeze-drying and storage conditions were strain and device dependent. For Aeromonas salmonicida CECT 894(T), best survival was obtained when horse serum supplemented with trehalose was used as lyoprotectant, while Aliivibrio fischeri LMG 4414(T) should be freeze-dried in skim milk supplemented with marine broth in a 1:1 ratio. Freeze-drying Campylobacter fetus CIP 53.96(T) using skim milk supplemented with trehalose as lyoprotectant resulted in best recovery. Xanthomonas fragariae DSM 3587(T) expressed high viability after freeze-drying and storage for all tested lyoprotectants and could not be considered as recalcitrant. In contrary, Flavobacterium columnare LMG 10406(T) did not survive the freeze-drying process under all tested conditions. PMID:25773973

  2. Prevalence, characterization, and antimicrobial resistance of Aeromonas strains from various retail food products in Mumbai, India.

    PubMed

    Nagar, Vandan; Shashidhar, Ravindranath; Bandekar, Jayant R

    2011-09-01

    A total of 154 food samples (chicken, fish, and ready-to-eat sprouts) from various retail outlets in Mumbai, India, were analyzed for the presence of Aeromonas spp. over a period of 2 y (January 2006 to March 2008). Twenty-two Aeromonas isolates belonging to 7 different species were isolated from 18 (11.7%) food samples. The highest percentages of isolation were from chicken (28.6%) followed by fish (20%) and sprout (2.5%) samples. Aeromonas caviae, A. veronii bv. sobria, and A. salmonicida were the most frequently isolated species from sprouts, chicken, and fish samples, respectively. The genes encoding for putative virulence factors, cytotoxic enterotoxin (act), hemolysin (hly), aerolysin (aer), elastase (ahyB), and lipase (lip) were detected using polymerase chain reaction method in 59.1%, 40.9%, 22.7%, 54.5%, and 31.8% of the strains, respectively. The isolated Aeromonas strains were found to be positive for virulence factors, that is, amylase, DNase, gelatinase, protease, and lipase production. More than 60% isolates were also positive for β-hemolytic activity. All these food isolates were found to be resistant to ampicillin and bacitracin, and sensitive to gentamicin, 3rd-generation cephalosporins (ceftazidime, cephotaxime, ceftriaxone), and chloramphenicol. Seventeen (77.2%) isolates harbored single and/or multiple plasmids (approximately 5 to >16 kb). The XbaI digestion patterns of chromosomal DNA of these isolates, using pulsed field gel electrophoresis, showed high genetic diversity among these isolates. Our results demonstrate the presence of various Aeromonas spp. with virulence potential and antimicrobial resistance in different food products marketed in Mumbai, India. The potential health risks posed by consumption of these raw or undercooked food products should not be underestimated. PMID:21824136

  3. Program Calibrates Strain Gauges

    NASA Technical Reports Server (NTRS)

    Okazaki, Gary D.

    1991-01-01

    Program dramatically reduces personnel and time requirements for acceptance tests of hardware. Data-acquisition system reads output from Wheatstone full-bridge strain-gauge circuit and calculates strain by use of shunt calibration technique. Program nearly instantaneously tabulates and plots strain data against load-cell outputs. Modified to acquire strain data for other specimens wherever full-bridge strain-gauge circuits used. Written in HP BASIC.

  4. Superlattice strain gage

    DOEpatents

    Noel, Bruce W.; Smith, Darryl L.; Sinha, Dipen N.

    1990-01-01

    A strain gage comprising a strained-layer superlattice crystal exhibiting piezoelectric properties is described. A substrate upon which such a strained-layer superlattice crystal has been deposited is attached to an element to be monitored for strain. A light source is focused on the superlattice crystal and the light reflected from, passed through, or emitted from the crystal is gathered and compared with previously obtained optical property data to determine the strain in the element.

  5. Superlattice strain gage

    DOEpatents

    Noel, B.W.; Smith, D.L.; Sinha, D.N.

    1988-06-28

    A strain gage comprising a strained-layer superlattice crystal exhibiting piezoelectric properties is described. A substrate upon which such a strained-layer superlattice crystal has been deposited is attached to an element to be monitored for strain. A light source is focused on the superlattice crystal and the light reflected from, passed through, or emitted from the crystal is gathered and compared with previously obtained optical property data to determine the strain in the element. 8 figs.

  6. Miniature biaxial strain transducer

    NASA Technical Reports Server (NTRS)

    Hoffman, I. S. (Inventor)

    1976-01-01

    A reusable miniature strain transducer for use in the measurement of static or quasi-static, high level, biaxial strain on the surface of test specimens or structures was studied. Two cantilever arms, constructed by machining the material to appropriate flexibility, are self-aligning and constitute the transducing elements of the device. Used in conjunction with strain gages, the device enables testing beyond normal gage limits for high strains and number of load cycles. The device does not require conversion computations since the electrical output of the strain gages is directly proportional to the strain measured.

  7. Strains and Sprains

    MedlinePlus

    ... move the injured part, and you might even think you have broken a bone. How Does a Strain or Sprain Happen? Strains often happen when you put a lot of pressure on a muscle or you push it too far, such as when lifting a heavy object. Strains may be more likely to happen if ...

  8. Sprains and Strains

    MedlinePlus

    ... happens. A strain is a stretched or torn muscle or tendon. Tendons are tissues that connect muscle to bone. Twisting or pulling these tissues can ... suddenly or develop over time. Back and hamstring muscle strains are common. Many people get strains playing ...

  9. Elevated temperature strain gages

    NASA Technical Reports Server (NTRS)

    Brittain, J. O.; Geslin, D.; Lei, J. F.

    1986-01-01

    One of the goals of the HOST Program is the development of electrical resistance strain gages for static strain measurements at temperatures equal to or greater than 1273 K. Strain gage materials must have a reproducible or predictable response to temperature, time and strain. It is the objective of this research to investigate criteria for the selection of materials for such applications through electrical properties studies. The results of the investigation of two groups of materials, refractory compounds and binary alloy solid solutions are presented.

  10. Thin film strain transducer

    NASA Technical Reports Server (NTRS)

    Rand, J. L. (Inventor)

    1984-01-01

    A strain transducer system and process for making the same is disclosed. A beryllium copper ring having four strain gages is electrically connected in Wheatstone bridge fashion to the output instrumentation. Tabs are bonded to a balloon or like surface with strain on the surface causing bending of a ring which provides an electrical signal through the gages proportional to the surface strain. A photographic pattern of a one half ring segment as placed on a sheet of beryllium copper for chem-mill etch formation is illustrated.

  11. Can strain magnetize light?

    NASA Astrophysics Data System (ADS)

    2013-02-01

    Strain in photonic structures can induce pseudomagnetic fields and Landau levels. Nature Photonics spoke to Mordechai Segev, Mikael Rechtsman, Alexander Szameit and Julia Zeuner about their unique approach.

  12. Geodetic Strain Analysis Tool

    NASA Technical Reports Server (NTRS)

    Kedar, Sharon; Baxter, Sean C.; Parker, Jay W.; Webb, Frank H.; Owen, Susan E.; Sibthorpe, Anthony J.; Dong, Danan

    2011-01-01

    A geodetic software analysis tool enables the user to analyze 2D crustal strain from geodetic ground motion, and create models of crustal deformation using a graphical interface. Users can use any geodetic measurements of ground motion and derive the 2D crustal strain interactively. This software also provides a forward-modeling tool that calculates a geodetic velocity and strain field for a given fault model, and lets the user compare the modeled strain field with the strain field obtained from the user s data. Users may change parameters on-the-fly and obtain a real-time recalculation of the resulting strain field. Four data products are computed: maximum shear, dilatation, shear angle, and principal components. The current view and data dependencies are processed first. The remaining data products and views are then computed in a round-robin fashion to anticipate view changes. When an analysis or display parameter is changed, the affected data products and views are invalidated and progressively re-displayed as available. This software is designed to facilitate the derivation of the strain fields from the GPS and strain meter data that sample it to facilitate the understanding of the strengths and weaknesses of the strain field derivation from continuous GPS (CGPS) and other geodetic data from a variety of tectonic settings, to converge on the "best practices" strain derivation strategy for the Solid Earth Science ESDR System (SESES) project given the CGPS station distribution in the western U.S., and to provide SESES users with a scientific and educational tool to explore the strain field on their own with user-defined parameters.

  13. Mechanical strain isolator mount

    NASA Technical Reports Server (NTRS)

    James, Gordon E. (Inventor)

    1991-01-01

    Certain devices such as optical instruments must preserve their alignmental integrity while being subjected to mechanical strain. A mechanical strain isolator mount is provided to preserve the alignmental integrity of an alignment sensitive instrument. An alignment sensitive instrument is mounted on a rectangular base. Flexural legs are connected at their proximal ends to the rectangular base. Flexural legs are also spaced parallel to the sides. Mounting pads are connected to the legs at the distal end and the mechanical strain isolator mount is attached to the substrate by means of threaded bolts. When a mounting pad and its respective leg is subjected to lateral strain in either the X or Y direction via the substrate, the respective leg relieves the strain by bending in the direction of the strain. An axial strain on a mounting pad in the Z direction is relieved by a rotational motion of the legs in the direction of the strain. When the substrate is stress free, the flexural legs return to their original condition and thus preserve the original alignment integrity of the alignment sensitive instrument.

  14. Light intensity strain analysis

    NASA Technical Reports Server (NTRS)

    Williams, J. G. (Inventor)

    1973-01-01

    A process is described for the analysis of the strain field of structures subjected to large deformations involving a low modulus substrate having a high modulus, relatively thin coating. The optical properties of transmittance and reflectance are measured for the coated substrate while stressed and unstressed to indicate the strain field for the coated substrate.

  15. Strain gauge installation tool

    DOEpatents

    Conard, Lisa Marie

    1998-01-01

    A tool and a method for attaching a strain gauge to a test specimen by maaining alignment of, and applying pressure to, the strain gauge during the bonding of the gauge to the specimen. The tool comprises rigid and compliant pads attached to a spring-loaded clamp. The pads are shaped to conform to the specimen surface to which the gauge is to be bonded. The shape of the pads permits the tool to align itself to the specimen and to maintain alignment of the gauge to the specimen during the bond curing process. A simplified method of attaching a strain gauge is provided by use of the tool.

  16. Mechanochromic polyurethane strain sensor

    NASA Astrophysics Data System (ADS)

    Cellini, F.; Khapli, S.; Peterson, S. D.; Porfiri, M.

    2014-08-01

    In this Letter, we study the mechanical and optical response of a thermoplastic polyurethane blended with 0.5 wt. % of bis(benzoxazolyl)stilbene dye. The mechanochromic behavior of the material is characterized in a uniaxial stress-relaxation test by simultaneously acquiring the applied force, mechanical deformation, and fluorescence emission. To offer insight into the stress-strain response of the polymer-dye blend, we adapt a classical nonlinear constitutive behavior for elastomeric materials that accounts for stress-induced softening. We correlate the fluorescent response with the mechanical strain to demonstrate the possibility of accurate strain sensing for a broad range of deformations during both loading and unloading.

  17. Strain gauge installation tool

    SciTech Connect

    Conard, Lisa Marie

    1997-12-01

    A tool and a method for attaching a strain gauge to a test specimen by maintaining alignment of, and applying pressure to, the strain gauge during the bonding of the gauge to the specimen. The tool comprises rigid and compliant pads attached to a spring-loaded clamp. The pads are shaped to conform to the specimen surface to which the gauge is to be bonded. The shape of the pads permits the tool to align itself to the specimen and to maintain alignment of the gauge to the specimen during the bond curing process. A simplified method of attaching a strain gauge is provided by use of the tool.

  18. What Are Sprains and Strains?

    MedlinePlus

    ... sprain, one or more ligaments is stretched or torn. What Causes a Sprain? Where Do Sprains Usually ... strain, a muscle or tendon is stretched or torn. What Causes Strains? A strain is caused by ...

  19. Sprains and Strains

    MedlinePlus

    ... people at risk for strains. Gymnastics, tennis, rowing, golf, and other sports that require extensive gripping can ... Trials and You was designed to help people learn more about clinical trials, why they matter, and ...

  20. Nanowires enabling strained photovoltaics

    SciTech Connect

    Greil, J.; Bertagnolli, E.; Lugstein, A.; Birner, S.

    2014-04-21

    Photovoltaic nano-devices have largely been relying on charge separation in conventional p-n junctions. Junction formation via doping, however, imposes major challenges in process control. Here, we report on a concept for photovoltaic energy conversion at the nano scale without the need for intentional doping. Our approach relies on charge carrier separation in inhomogeneously strained germanium nanowires (Ge NWs). This concept utilizes the strain-induced gradient in bandgap along tapered NWs. Experimental data confirms the feasibility of strain-induced charge separation in individual vapor-liquid-solid grown Ge NW devices with an internal quantum efficiency of ∼5%. The charge separation mechanism, though, is not inherently limited to a distinct material. Our work establishes a class of photovoltaic nano-devices with its opto-electronic properties engineered by size, shape, and applied strain.

  1. MEMS Graphene Strain Sensor

    NASA Astrophysics Data System (ADS)

    Young, Clinton Wen-Chieh

    Graphene is a two dimensional honeycomb structure of sp2 hybridized carbon atoms that has possibilities in many applications due to its excellent mechanical and electrical properties. One application for Graphene is in the field of sensors. Graphene's electronic properties do not degrade when it undergoes mechanical strain which is advantageous for strain sensors. In this thesis, certain properties, such as the piezo-resistivity and flexibility, of graphene will be explored to show how they can be utilized to make a strain sensing device. Our original fabrication process of patterning graphene and the transfer process of graphene onto a flexible substrate will be discussed. The development of a stretchable and flexible graphene based rosette strain sensor will also be detailed. Developing a novel, reliable patterning process for the graphene is the first step to manufacture a stretchable graphene based sensor. The graphene was patterned using a photolithography and etching process that was developed by our research team, then it was transferred to a flexible polymer substrate with the use of a combination of soft lithography and wet etching of the Ni foil with ferric chloride solution. Graphene patterning is an essential step in fabricating reliable and sensitive sensors. With this process, graphene can be consistently patterned into different shapes and sizes. To utilize the graphene as the sensing material it also needs to be transferred onto a flexible substrate. The innovative transfer process developed by our research team consistently adheres graphene to a flexible PDMS substrate while removing the original nickel substrate. In the end, the graphene was transferred from the metal substrate to the desired flexible substrate. This process was repeated multiple times to create a stack and multilayer device. While many graphene-based strain sensors have been developed, they are uni-directional and can only measure the strain applied on the sensor in a principle

  2. The atomic strain tensor

    SciTech Connect

    Mott, P.H.; Argon, A.S. ); Suter, U.W. Massachusetts Institute of Technology, Cambridge, MA )

    1992-07-01

    A definition of the local atomic strain increments in three dimensions and an algorithm for computing them is presented. An arbitrary arrangement of atoms is tessellated in to Delaunay tetrahedra, identifying interstices, and Voronoi polyhedra, identifying atomic domains. The deformation gradient increment tensor for interstitial space is obtained from the displacement increments of the corner atoms of Delaunay tetrahedra. The atomic site strain increment tensor is then obtained by finding the intersection of the Delaunay tetrahedra with the Voronoi polyhedra, accumulating the individual deformation gradient contributions of the intersected Delaunay tetrahedra into the Voronoi polyhedra. An example application is discussed, showing how the atomic strain clarifies the relative local atomic movement for a polymeric glass treated at the atomic level. 6 refs. 10 figs.

  3. Strain gauge installation tool

    DOEpatents

    Conard, L.M.

    1998-06-16

    A tool and a method are disclosed for attaching a strain gauge to a test specimen by maintaining alignment of, and applying pressure to, the strain gauge during the bonding of the gauge to the specimen. The tool comprises rigid and compliant pads attached to a spring-loaded clamp. The pads are shaped to conform to the specimen surface to which the gauge is to be bonded. The shape of the pads permits the tool to align itself to the specimen and to maintain alignment of the gauge to the specimen during the bond curing process. A simplified method of attaching a strain gauge is provided by use of the tool. 6 figs.

  4. Diffusion on strained surfaces

    NASA Astrophysics Data System (ADS)

    Schroeder, M.; Wolf, D. E.

    1997-03-01

    The change of diffusion kinetics when elastic fields are present is discussed for diffusion on (001) surfaces of simple cubic, fcc and bcc lattices. All particles interact pairwise with a Lennard-Jones potential. The simple cubic lattice was stabilized by an anisotropic prefactor. It is found that generically compressive strain enhances diffusion whereas tensile strain increases the activation barrier. An approximately linear dependence of the barrier in a wide range of misfits is found. In heteroepitaxy, diffusion on top of large clusters is inhomogeneous and anisotropic. The kinetics close to edges and centers of islands are remarkably different. In many cases changes of binding energies are small compared to those of saddle point energies. Thermodynamic arguments (minimization of free energy) are not appropriate to describe diffusion on strained surfaces in these cases.

  5. Annihilation of strained vortices

    NASA Astrophysics Data System (ADS)

    Kimura, Yoshifumi

    2014-11-01

    As an initial stage of vortex reconnection, approach of nearly anti-parallel vortices has often been observed experimentally and studied numerically. Inspired by the recent experiment by Kleckner and Irvine on the dynamics of knotted vortices, we have studied the motion of two anti-parellel Burgers vortices driven by an axisymmetric linear straining field. We first extend the Burgers vortex solution which is a steady exact solution of the Navier-Stokes equation to a time-dependent exact solution. Then by superposing two such solutions, we investigate the annihilation process analytically. We can demonstrate that during the annihilation process the total vorticity decays exponentially on a time-scale proportional to the inverse of the rate of strain, even as the kinematic viscosity tends to 0. The analytic results are compared with the numerical simulations of two strained vortices with the vortex-vortex nonlinear interaction by Buntine and Pullin.

  6. Strain isolated ceramic coatings

    NASA Technical Reports Server (NTRS)

    Tolokan, R. P.; Brady, J. B.; Jarrabet, G. P.

    1985-01-01

    Plasma sprayed ceramic coatings are used in gas turbine engines to improve component temperature capability and cooling air efficiency. A compliant metal fiber strain isolator between a plasma sprayed ceramic coating and a metal substrate improves ceramic durability while allowing thicker coatings for better insulation. Development of strain isolated coatings has concentrated on design and fabrication of coatings and coating evaluation via thermal shock testing. In thermal shock testing, five types of failure are possible: buckling failure im compression on heat up, bimetal type failure, isothermal expansion mismatch failure, mudflat cracking during cool down, and long term fatigue. A primary failure mode for thermally cycled coatings is designated bimetal type failure. Bimetal failure is tensile failure in the ceramic near the ceramic-metal interface. One of the significant benefits of the strain isolator is an insulating layer protecting the metal substrate from heat deformation and thereby preventing bimetal type failure.

  7. Local Strain Evaluation of Strained-SOI Structures

    NASA Astrophysics Data System (ADS)

    Usuda, Koji; Mizuno, Tomohisa; Numata, Toshinori; Tezuka, Tsutomu; Sugiyama, Naoharu; Moriyama, Yoshihiko; Nakaharai, Shu; Takagi, Shin-Ichi

    The strain relaxation within a strained-Si on SiGe on insulator (SGOI) structure might be one of the key issues in development of strained-Si MOSFET devices for high-performance ULSIs. In order to investigate the strain relaxation within the thin strained-Si layers, a new characterization technique to directly evaluate a local strain variation in the layers is required. Hence, we have developed the nano-beam electron diffraction (NBD) method which has a lateral resolution of 10 nm and a strain resolution of 0.1%. In this paper, we discuss a detailed investigation of whether the NBD method could be utilized to clarify a strain in a strained-Si layer on the SGOI structures.

  8. ConStrains identifies microbial strains in metagenomic datasets

    PubMed Central

    Luo, Chengwei; Knight, Rob; Siljander, Heli; Knip, Mikael; Xavier, Ramnik J; Gevers, Dirk

    2015-01-01

    An important fraction of microbial diversity is harbored in strain individuality, so identification of conspecific bacterial strains is imperative for improved understanding of microbial community functions. Limitations in bioinformatics and sequencing technologies have to date precluded strain identification owing to difficulties in phasing short reads to faithfully recover the original strain-level genotypes, which have highly similar sequences. We present ConStrains, an open-source algorithm that identifies conspecific strains from metagenomic sequence data and reconstructs the phylogeny of these strains in microbial communities. The algorithm uses single-nucleotide polymorphism (SNP) patterns in a set of universal genes to infer within-species structures that represent strains. Applying ConStrains to simulated and host-derived data sets provides insights into microbial community dynamics. PMID:26344404

  9. ConStrains identifies microbial strains in metagenomic datasets.

    PubMed

    Luo, Chengwei; Knight, Rob; Siljander, Heli; Knip, Mikael; Xavier, Ramnik J; Gevers, Dirk

    2015-10-01

    An important fraction of microbial diversity is harbored in strain individuality, so identification of conspecific bacterial strains is imperative for improved understanding of microbial community functions. Limitations in bioinformatics and sequencing technologies have to date precluded strain identification owing to difficulties in phasing short reads to faithfully recover the original strain-level genotypes, which have highly similar sequences. We present ConStrains, an open-source algorithm that identifies conspecific strains from metagenomic sequence data and reconstructs the phylogeny of these strains in microbial communities. The algorithm uses single-nucleotide polymorphism (SNP) patterns in a set of universal genes to infer within-species structures that represent strains. Applying ConStrains to simulated and host-derived datasets provides insights into microbial community dynamics. PMID:26344404

  10. The strained state cosmology

    NASA Astrophysics Data System (ADS)

    Tartaglia, Angelo

    2016-01-01

    Starting from some relevant facts concerning the behavior of the universe over large scale and time span, the analogy between the geometric approach of General Relativity and the classical description of an elastic strained material continuum is discussed. Extending the elastic deformation approach to four dimensions it is shown that the accelerated expansion of the universe is recovered. The strain field of space-time reproduces properties similar to the ones ascribed to the dark energy currently called in to explain the accelerated expansion. The strain field in the primordial universe behaves as radiation, but asymptotically it reproduces the cosmological constant. Subjecting the theory to a number of cosmological tests confirms the soundness of the approach and gives an optimal value for the one parameter of the model, i.e. the bulk modulus of the space-time continuum. Finally various aspects of the Strained State Cosmology (SSC) are discussed and contrasted with some non-linear massive gravity theories. The possible role of structure topological defects is also mentioned. The conclusion is that SSC is at least as good as the ΛCDM standard cosmology, giving a more intuitive interpretation of the physical nature of the phenomena.

  11. Strain gage barometric transmitter

    NASA Technical Reports Server (NTRS)

    Viton, P.

    1977-01-01

    A strain gage barometric transmitter for measuring the atmospheric pressure in severe environmental conditions is described. This equipment specifications are presented and its performance assessed. It is shown that this barometric sensor can measure the atmospheric pressure with a precision of 0.5 mb during a 6 month period.

  12. Accurate strain measurements in highly strained Ge microbridges

    NASA Astrophysics Data System (ADS)

    Gassenq, A.; Tardif, S.; Guilloy, K.; Osvaldo Dias, G.; Pauc, N.; Duchemin, I.; Rouchon, D.; Hartmann, J.-M.; Widiez, J.; Escalante, J.; Niquet, Y.-M.; Geiger, R.; Zabel, T.; Sigg, H.; Faist, J.; Chelnokov, A.; Rieutord, F.; Reboud, V.; Calvo, V.

    2016-06-01

    Ge under high strain is predicted to become a direct bandgap semiconductor. Very large deformations can be introduced using microbridge devices. However, at the microscale, strain values are commonly deduced from Raman spectroscopy using empirical linear models only established up to ɛ100 = 1.2% for uniaxial stress. In this work, we calibrate the Raman-strain relation at higher strain using synchrotron based microdiffraction. The Ge microbridges show unprecedented high tensile strain up to 4.9% corresponding to an unexpected Δω = 9.9 cm-1 Raman shift. We demonstrate experimentally and theoretically that the Raman strain relation is not linear and we provide a more accurate expression.

  13. The meaning of role strain.

    PubMed

    Ward, C R

    1986-01-01

    Explicating the meaning of the concept of role strain is important in role theory formulation, an area requiring further development to provide explanations and predictions for both patient and provider roles. In this analysis, the use of the term role strain is traced from the structural-functionalist and symbolic-interactionist perspectives. Descriptive, stipulative, and connotative definitions of role strain are derived, and necessary and relevant properties are proposed. Antecedent and intervening conditions for role strain are outlined from the literature. Role strain manifestations and empirical referents are presented, and an initial step is taken toward a theoretical formulation by defining role strain within the context of role stress. PMID:3079985

  14. Highly stretchable miniature strain sensor for large dynamic strain measurement

    DOE PAGESBeta

    Song, Bo; Yao, Shurong; Nie, Xu; Yu, Xun; Blecke, Jill

    2016-01-01

    In this paper, a new type of highly stretchable strain sensor was developed to measure large strains. The sensor was based on the piezo-resistive response of carbon nanotube (CNT)/polydimethylsiloxane (PDMS) composite thin films. The piezo-resistive response of CNT composite gives accurate strain measurement with high frequency response, while the ultra-soft PDMS matrix provides high flexibility and ductility for large strain measurement. Experimental results show that the CNT/PDMS sensor measures large strains (up to 8 %) with an excellent linearity and a fast frequency response. The new miniature strain sensor also exhibits much higher sensitivities than the conventional foil strain gages,more » as its gauge factor is 500 times of that of the conventional foil strain gages.« less

  15. Highly stretchable miniature strain sensor for large dynamic strain measurement

    SciTech Connect

    Song, Bo; Yao, Shurong; Nie, Xu; Yu, Xun; Blecke, Jill

    2016-01-01

    In this paper, a new type of highly stretchable strain sensor was developed to measure large strains. The sensor was based on the piezo-resistive response of carbon nanotube (CNT)/polydimethylsiloxane (PDMS) composite thin films. The piezo-resistive response of CNT composite gives accurate strain measurement with high frequency response, while the ultra-soft PDMS matrix provides high flexibility and ductility for large strain measurement. Experimental results show that the CNT/PDMS sensor measures large strains (up to 8 %) with an excellent linearity and a fast frequency response. The new miniature strain sensor also exhibits much higher sensitivities than the conventional foil strain gages, as its gauge factor is 500 times of that of the conventional foil strain gages.

  16. Isolation of a pigment-producing strain of Aeromonas liquefaciens from silver salmon (Oncorhynchus kisutch)

    USGS Publications Warehouse

    Ross, A.J.

    1962-01-01

    Aeromonas salmonicida, the etiological agent of furunculosis in fish, is distinctive in the field of fish diseases in that it may readily be recognized by the water-soluble reddish-brown pigment formed on culture media containing tyrosine. Additional tests for the identification of this organism include blackening of the colonial growth when flooded with an aqueous solution of p-phenylenediamine and a lack of motility (Griffin, Progressive Fish Culturist 14:74, 1952).

  17. High temperature strain gages

    NASA Technical Reports Server (NTRS)

    Gregory, Otto J. (Inventor); You, Tao (Inventor)

    2011-01-01

    A ceramic strain gage based on reactively sputtered indium-tin-oxide (ITO) thin films is used to monitor the structural integrity of components employed in aerospace propulsion systems operating at temperatures in excess of 1500.degree. C. A scanning electron microscopy (SEM) of the thick ITO sensors reveals a partially sintered microstructure comprising a contiguous network of submicron ITO particles with well defined necks and isolated nanoporosity. Densification of the ITO particles was retarded during high temperature exposure with nitrogen thus stabilizing the nanoporosity. ITO strain sensors were prepared by reactive sputtering in various nitrogen/oxygen/argon partial pressures to incorporate more nitrogen into the films. Under these conditions, sintering and densification of the ITO particles containing these nitrogen rich grain boundaries was retarded and a contiguous network of nano-sized ITO particles was established.

  18. Novel strained superjunction VDMOS

    NASA Astrophysics Data System (ADS)

    Naugarhiya, Alok; Dubey, Shashank; Kondekar, Pravin N.

    2015-09-01

    In this paper, we have proposed novel strained superjunction (s-SJ) vertical double diffused MOS (VDMOS). Through channel engineering, we have introduced strain effects in s-SJ device using thin separate p-type silicon-germanium (p-SiGe) layer over silicon p-pillar. Further, we have designed process flow for the possible fabrication of s-SJ VDMOS. The proposed s-SJ devices fitted with less input capacitance (Cin) and 1.2∼3 times higher output current density than conventional SJ VDMOS. Therefore, 40% less gate charge (Qg) is required to turn-on the s-SJ VDMOS and Ron A is optimized in between 12% and 46%.

  19. Strain Release Amination

    PubMed Central

    Gianatassio, Ryan; Lopchuk, Justin M.; Wang, Jie; Pan, Chung-Mao; Malins, Lara R.; Prieto, Liher; Brandt, Thomas A.; Collins, Michael R.; Gallego, Gary M.; Sach, Neal W.; Spangler, Jillian E.; Zhu, Huichin; Zhu, Jinjiang; Baran, Phil S.

    2015-01-01

    To optimize drug candidates, modern medicinal chemists are increasingly turning to an unconventional structural motif: small, strained ring systems. However, the difficulty of introducing substituents such as bicyclo[1.1.1]pentanes, azetidines, or cyclobutanes often outweighs the challenge of synthesizing the parent scaffold itself. Thus, there is an urgent need for general methods to rapidly and directly append such groups onto core scaffolds. Here we report a general strategy to harness the embedded potential energy of effectively spring-loaded C–C and C–N bonds with the most oft-encountered nucleophiles in pharmaceutical chemistry, amines. Strain release amination can diversify a range of substrates with a multitude of desirable bioisosteres at both the early and late-stages of a synthesis. The technique has also been applied to peptide labeling and bioconjugation. PMID:26816372

  20. Interfacial residual thermal strain

    NASA Astrophysics Data System (ADS)

    Kasen, M.; Santoyo, R.

    A method has been developed for assessing the influence of polymer chemical composition and of processing parameters on the magnitude of residual stress developed in glass-fibre-reinforced composites subjected to various cure cycles and subsequently cooled to cryogenic temperatures. The test method was applied to nine resin types, including epoxy, vinyl ester, polyester, cyanate ester and phenolic formulations. Results suggest that polyester resin develops substantially less overall residual strain than do the other resin systems.

  1. Genealogies of mouse inbred strains.

    PubMed

    Beck, J A; Lloyd, S; Hafezparast, M; Lennon-Pierce, M; Eppig, J T; Festing, M F; Fisher, E M

    2000-01-01

    The mouse is a prime organism of choice for modelling human disease. Over 450 inbred strains of mice have been described, providing a wealth of different genotypes and phenotypes for genetic and other studies. As new strains are generated and others become extinct, it is useful to review periodically what strains are available and how they are related to each other, particularly in the light of available DNA polymorphism data from microsatellite and other markers. We describe the origins and relationships of inbred mouse strains, 90 years after the generation of the first inbred strain. Given the large collection of inbred strains available, and that published information on these strains is incomplete, we propose that all genealogical and genetic data on inbred strains be submitted to a common electronic database to ensure this valuable information resource is preserved and used efficiently. PMID:10615122

  2. Sports Hernia: Misdiagnosed Muscle Strain

    MedlinePlus

    ... Manipulative Treatment Becoming a DO Video Library Misdiagnosed Muscle Strain Can Be A Pain Page Content If ... speeds, sports hernias are frequently confused with common muscle strain ,” says Michael Sampson, DO, who practices in ...

  3. Construction of the Inbred Strain.

    PubMed

    Shinya, Minori

    2016-01-01

    Genetically homogeneous populations such as inbred strains are valuable experimental tools in various fields of biomedical analyses. In many animals, inbred strains are established by consecutive sib-pair mating for a minimum of 20 generations. As the generation proceeds, fitness of the population reduces usually. Therefore, in order to establish inbred strains, the important point is the selection of pairs in good condition at each generation. Here, I describe the procedure and tips for generating inbred strains in zebrafish. PMID:27464804

  4. Strain calibration of optical FBG-based strain sensors

    NASA Astrophysics Data System (ADS)

    Roths, Johannes; Wilfert, Andre; Kratzer, Peter; Jülich, Florian; Kuttler, Rolf

    2010-09-01

    A facility for strain sensitivity calibration of optical FBG-based strain sensors according to the German VDI/VDE 2660 guideline was established and characterized. Statistical analysis of several calibration measurement series performed with one single type of FBG strain sensor and application technique showed a reproducibility of 0.15%. Strain sensitivities for FBGs inscribed in two different types of optical fibres (GF1B and PR2008) showed significantly different strain sensitivities of k = 0.7885+/-0.0026 and k = 0.7758+/-0.0024, respectively.

  5. Strain actuated aeroelastic control

    NASA Technical Reports Server (NTRS)

    Lazarus, Kenneth B.

    1992-01-01

    Viewgraphs on strain actuated aeroelastic control are presented. Topics covered include: structural and aerodynamic modeling; control law design methodology; system block diagram; adaptive wing test article; bench-top experiments; bench-top disturbance rejection: open and closed loop response; bench-top disturbance rejection: state cost versus control cost; wind tunnel experiments; wind tunnel gust alleviation: open and closed loop response at 60 mph; wind tunnel gust alleviation: state cost versus control cost at 60 mph; wind tunnel command following: open and closed loop error at 60 mph; wind tunnel flutter suppression: open loop flutter speed; and wind tunnel flutter suppression: closed loop state cost curves.

  6. Strain balanced quantum posts

    SciTech Connect

    Alonso-Alvarez, D.; Alen, B.; Ripalda, J. M.; Llorens, J. M.; Taboada, A. G.; Briones, F.; Roldan, M. A.; Hernandez-Saz, J.; Hernandez-Maldonado, D.; Herrera, M.; Molina, S. I.

    2011-04-25

    Quantum posts are assembled by epitaxial growth of closely spaced quantum dot layers, modulating the composition of a semiconductor alloy, typically InGaAs. In contrast with most self-assembled nanostructures, the height of quantum posts can be controlled with nanometer precision, up to a maximum value limited by the accumulated stress due to the lattice mismatch. Here, we present a strain compensation technique based on the controlled incorporation of phosphorous, which substantially increases the maximum attainable quantum post height. The luminescence from the resulting nanostructures presents giant linear polarization anisotropy.

  7. [Echinococcus and strain concepts].

    PubMed

    Utük, Armağan Erdem; Simsek, Sami

    2008-01-01

    Hydatid disease (echinococcosis) is one of the most important parasitic zoonoses and remains a public health and economic problem all over the world. Echinococcus granulosus includes a number of genetic variants and, up to date, analyses of mitochondrial DNA sequences have identified ten distinct genetic types (genotypes G1-10). This categorization follows closely the pattern of strain variation emerging based on biological characteristics. The extensive variation in E. granulosus may influence life-cycle patterns, host specificity, development rate, antigenicity, transmission dynamics, sensitivity to chemotherapeutic agents, and pathology. In this review, the recent genetic characterizations of Echinococcus genus have been summarized. PMID:18351549

  8. Compensated High Temperature Strain Gage

    NASA Technical Reports Server (NTRS)

    1994-01-01

    A device for measuring strain in substrates at high temperatures in which the thermally induced apparent strain is nulled is described. Two gages are used, one active gage and one compensating gage. Both gages are placed on the substrate to be gaged; the active gage is attached such that it responds to mechanical and thermally induced apparent strain while the compensating gage is attached such that it does not respond to mechanical strain and and measures only thermally induced apparent strain. A thermal blanket is placed over the two gages to maintain the gages at the same temperature. The two gages are wired as adjacent arms of a wheatstone bridge which nulls the thermally induced apparent strain giving a true reading of the mechanical strain in the substrate.

  9. Geodetic strain measurements in Washington.

    USGS Publications Warehouse

    Savage, J.C.; Lisowski, M.; Prescott, W.H.

    1981-01-01

    Two new geodetic measurements of strain accumulation in the state of Washington for the interval 1972-1979 are reported. Near Seattle the average principal strain rates are 0.07 + or - 0.03 mu strain/yr N19oW and -0.13 + or - 0.02 mu strain/yr N71oE, and near Richland (south central Washington) the average principal strain rates are -0.02 + or - 0.01 mu strain/yr N36oW and -0.04 + or - 0.01 mu strain/yr N54oE. Extension is taken as positive, and the uncertainties quoted are standard deviations. A measurement of shear strain accumulation (dilation not determined) in the epoch 1914- 1966 along the north coast of Vancouver Island by the Geodetic Survey of Canada indicates a marginally significant accumulation of right-lateral shear (0.06 + or - 0.03 mu rad/yr) across the plate boundary (N40oW strike). Although there are significant differences in detail, these strain measurements are roughly consistent with a crude dislocation model that represents subduction of the Juan de Fuca plate. The observed accumulation of strain implies that large, shallow, thrust earthquakes should be expected off the coast of Washington and British Columbia. However, this conclusion is not easily reconciled with either observations of elevation change along the Washington coast or the focal mechanism solutions for shallow earthquakes in Washington. -Authors

  10. Strain Engineering in Graphene

    NASA Astrophysics Data System (ADS)

    Castro Neto, Antonio

    2011-03-01

    Graphene is a unique example of a one atom thick metallic membrane. Hence, graphene brings together properties of soft and hard condensed matter systems. The elementary electronic excitations in graphene, the Dirac quasiparticles, couple in a singular way to structural distortions in the form of scalar and vector potentials. Therefore, graphene has an effective electrodynamics where structural deformations couple to the Dirac particles at equal footing to electric and magnetic fields. This so-called strain engineering of the electronic properties of graphene opens doors for a new paradigm in terms of electronic devices, where electronic properties can be manipulated at will using its membrane-like properties. I thank partial support from from DOE Grant DE-FG02-08ER46512 and ONR Grant MURI N00014-09-1-1063.

  11. Inhomogeneous strains in small particles

    NASA Astrophysics Data System (ADS)

    Marks, L. D.

    1985-02-01

    This paper considers the evidence for strains in small particles. Firstly, the dynamical electron diffraction theory for dark field imaging of small particles is briefly reviewed, considering primarily the effects of strain on wedge crystals and identifying the fingerprint of strain contrast effects under strong beam conditions. Evidence included herein and from published papers by other authors clearly shows inhomogeneous strain effects in both multiply twinned particles and single crystals. Considering these results and earlier reports of lattice parameter changes, there are problems with the uniqueness of these analyses, and the strains in the small single crystals are thought more likely to be due to interfacial stresses or contaminants than any intrinsic particle effect; there are so many different origins of this type of strain that we cannot with confidence isolate a unique source. It is emphasised that the uniqueness of any interpretation of experimental results from small particles must be very carefully considered.

  12. Thermal strain imaging: a review

    PubMed Central

    Seo, Chi Hyung; Shi, Yan; Huang, Sheng-Wen; Kim, Kang; O'Donnell, Matthew

    2011-01-01

    Thermal strain imaging (TSI) or temporal strain imaging is an ultrasound application that exploits the temperature dependence of sound speed to create thermal (temporal) strain images. This article provides an overview of the field of TSI for biomedical applications that have appeared in the literature over the past several years. Basic theory in thermal strain is introduced. Two major energy sources appropriate for clinical applications are discussed. Promising biomedical applications are presented throughout the paper, including non-invasive thermometry and tissue characterization. We present some of the limitations and complications of the method. The paper concludes with a discussion of competing technologies. PMID:22866235

  13. Hydrogen production from microbial strains

    DOEpatents

    Harwood, Caroline S; Rey, Federico E

    2012-09-18

    The present invention is directed to a method of screening microbe strains capable of generating hydrogen. This method involves inoculating one or more microbes in a sample containing cell culture medium to form an inoculated culture medium. The inoculated culture medium is then incubated under hydrogen producing conditions. Once incubating causes the inoculated culture medium to produce hydrogen, microbes in the culture medium are identified as candidate microbe strains capable of generating hydrogen. Methods of producing hydrogen using one or more of the microbial strains identified as well as the hydrogen producing strains themselves are also disclosed.

  14. Strain in silicon nanowire beams

    NASA Astrophysics Data System (ADS)

    Ureña, Ferran; Olsen, Sarah H.; Šiller, Lidija; Bhaskar, Umesh; Pardoen, Thomas; Raskin, Jean-Pierre

    2012-12-01

    In this work, strain in silicon free standing beams loaded in uniaxial tension is experimentally and theoretically investigated for strain values ranging from 0 to 3.6%. The fabrication method allows multiple geometries (and thus strain values) to be processed simultaneously on the same wafer while being studied independently. An excellent agreement of strain determined by two non-destructive characterization techniques, Raman spectroscopy and mechanical displacement using scanning electron microscopy (SEM) markers, is found for all the sample lengths and widths. The measured data also show good agreement with theoretical predictions of strain based upon continuum mechanical considerations, giving validity to both measurement techniques for the entire range of strain values. The dependence of Young's modulus and fracture strain on size has also been analyzed. The Young's modulus is determined using SEM and compared with that obtained by resonance-based methods. Both methods produced a Young's modulus value close to that of bulk silicon with values obtained by resonance-based methods being slightly lower. Fracture strain is analyzed in 40 sets of samples with different beam geometries, yielding values up to 3.6%. The increase in fracture strain with decreasing beam width is compared with previous reports. Finally, the role of the surface on the mechanical properties is analyzed using UV and visible lasers having different penetration depths in silicon. The observed dependence of Raman shift on laser wavelength is used to assess the thermal conductivity of deformed silicon.

  15. Strain variation in corrugated graphene

    NASA Astrophysics Data System (ADS)

    Wang, Xuanye; Tantiwanichapan, Khwanchai; Christopher, Jason; Paiella, Roberto; Swan, Anna

    2015-03-01

    Raman spectroscopy is a powerful non-destructive technique for analyzing strain in graphene. Recently there has been interest in making corrugated graphene devices with varying spatial wavelengths Λ for plasmonic and THz applications. Transferring graphene onto corrugated substrates introduces strain, which if there was perfect clamping (high fraction) would cause a periodic strain variation. However, the strain variation for pattern size smaller than the diffraction limit λ makes it hard to precisely model the strain distribution. Here we present a detailed study on how strain varies in corrugated graphene with sub-diffraction limit periodicity Λ < λ. Mechanically exfoliated graphene was deposited onto sinusoidal shape silicon dioxide gratings with Λ=400 nm period using the pick and place transfer technique. We observed that the graphene is not rigidly clamped, but partially slides to relieve the strain. We model the linewidth variation to extract the local strain variation as well as the sliding in the presence of charge puddling in graphene. The method gives us a better understanding on graphene slippage and strain distribution in graphene on a corrugated substrate with sub-diffraction limit spatial period.

  16. Hypothetical strain-free oligoradicals

    PubMed Central

    Hoffmann, Roald; Eisenstein, Odile; Balaban, Alexandru T.

    1980-01-01

    Several new classes of oligoradicals free of angle strain are suggested and examined by means of molecular orbital calculations. The collapse products of these hypothetical radicals are highly strained molecules. Various electronic strategies for the stabilization of these oligoradicals have been explored. PMID:16592882

  17. Emerging Enteropathogenic Escherichia coli Strains?

    PubMed Central

    Irino, Kinue; Girão, Dennys M.; Girão, Valéria B.C.; Guth, Beatriz E.C.; Vaz, Tânia M.I.; Moreira, Fabiana C.; Chinarelli, Silvia H.; Vieira, Mônica A.M.

    2004-01-01

    Escherichia coli strains of nonenteropathogenic serogroups carrying eae but lacking the enteropathogenic E. coli adherence factor plasmid and Shiga toxin DNA probe sequences were isolated from patients (children, adults, and AIDS patients) with and without diarrhea in Brazil. Although diverse in phenotype and genotype, some strains are potentially diarrheagenic. PMID:15504277

  18. Difference Between Strain and Sprain.

    ERIC Educational Resources Information Center

    Connors, G. Patrick

    Provided in this description of the differences between a strain (damage to the muscle or tendon) and a sprain (damage to the ligament) are definitions of mild, moderate, and severe (first, second, and third degree) strains and sprains. A final caution is given that these are two separate and distinct problems and should be treated as such. (DC)

  19. [Repetition Strain Injury

    PubMed

    Ribeiro

    1997-01-01

    Muscular-skeletal disorders of the upper limbs resulting from work involving repetition strain (RSI) are now the most frequent work-related diseases in early or late industrialized countries. The author maintains that in addition to being work-related diseases, RSIs are symbolic illnesses revealing the contradictions and social pathogenesis of the new cycle of development and crisis in capitalist production. Discussing the social and historical dimensions of this process, the author insists that the low efficacy of technical interventions by labor engineering, ergonomics, and clinical medicine in the prevention, early and adequate diagnosis, and treatment of such post-modern illnesses and the difficulty in rehabilitating and reincorporating such workers reflect precisely a broader determination of health and illness, since the appropriation, incorporation, and use of technological innovations and the new forms of work management are defined according to the exclusive interests of capital. Thus, a growing contingent of young workers (mainly females) from different labor categories are losing or under threat of losing their health and work capacity, two essential and closely linked public values. The solution to the SRI issue must be political and collective. PMID:10886940

  20. High temperature strain measurement with a resistance strain gage

    NASA Technical Reports Server (NTRS)

    Lei, Jih-Fen; Fichtel, ED; Mcdaniel, Amos

    1993-01-01

    A PdCr based electrical resistance strain gage was demonstrated in the laboratory to be a viable sensor candidate for static strain measurement at high temperatures. However, difficulties were encountered while transferring the sensor to field applications. This paper is therefore prepared for recognition and resolution of the problems likely to be encountered with PdCr strain gages in field applications. Errors caused by the measurement system, installation technique and lead wire attachment are discussed. The limitations and some considerations related to the temperature compensation technique used for this gage are also addressed.

  1. Recent advances in echocardiography: strain and strain rate imaging

    PubMed Central

    Mirea, Oana; Duchenne, Jurgen; Voigt, Jens-Uwe

    2016-01-01

    Deformation imaging by echocardiography is a well-established research tool which has been gaining interest from clinical cardiologists since the introduction of speckle tracking. Post-processing of echo images to analyze deformation has become readily available at the fingertips of the user. New parameters such as global longitudinal strain have been shown to provide added diagnostic value, and ongoing efforts of the imaging societies and industry aimed at harmonizing methods will improve the technique further. This review focuses on recent advances in the field of echocardiographic strain and strain rate imaging, and provides an overview on its current and potential future clinical applications. PMID:27158476

  2. Ferroelastic dynamics and strain compatibility

    NASA Astrophysics Data System (ADS)

    Lookman, T.; Shenoy, S. R.; Rasmussen, K. Ø.; Saxena, A.; Bishop, A. R.

    2003-01-01

    We derive underdamped evolution equations for the order-parameter (OP) strains of a proper ferroelastic material undergoing a structural transition, using Lagrangian variations with Rayleigh dissipation, and a free energy as a polynomial expansion in the N=n+Nop symmetry-adapted strains. The Nop strain equations are structurally similar in form to the Lagrange-Rayleigh one-dimensional strain dynamics of Bales and Gooding (BG), with “strain accelerations” proportional to a Laplacian acting on a sum of the free-energy strain derivative and frictional strain force assuming geometric linearity. The tensorial St. Venant’s elastic compatibility constraints that forbid defects, are used to determine the n non-order-parameter strains in terms of the OP strains, generating anisotropic and long-range OP contributions to the free energy, friction, and noise. The same OP equations are obtained by either varying the displacement vector components, or by varying the N strains subject to the Nc compatibility constraints. A Fokker-Planck equation, based on the BG dynamics in more than one dimension with noise terms, is set up. The BG dynamics corresponds to a set of nonidentical nonlinear (strain) oscillators labeled by wave vector k→, with competing short- and long-range couplings. The oscillators have different “strain-mass” densities ρ(k)˜1/k2 and dampings ˜1/ρ(k)˜k2, so the lighter large-k oscillators equilibrate first, corresponding to earlier formation of smaller-scale oriented textures. This produces a sequential-scale scenario for post-quench nucleation, elastic patterning, and hierarchical growth. Neglecting inertial effects yields a late-time dynamics for identifying extremal free-energy states, that is, of the time-dependent Ginzburg-Landau form, with nonlocal, anisotropic Onsager coefficients that become constants for special parameter values. We consider in detail the two-dimensional (2D) unit-cell transitions from a triangular to a centered

  3. Low TCR nanocomposite strain gages

    NASA Technical Reports Server (NTRS)

    Gregory, Otto J. (Inventor); Chen, Ximing (Inventor)

    2012-01-01

    A high temperature thin film strain gage sensor capable of functioning at temperatures above 1400.degree. C. The sensor contains a substrate, a nanocomposite film comprised of an indium tin oxide alloy, zinc oxide doped with alumina or other oxide semiconductor and a refractory metal selected from the group consisting of Pt, Pd, Rh, Ni, W, Ir, NiCrAlY and NiCoCrAlY deposited onto the substrate to form an active strain element. The strain element being responsive to an applied force.

  4. High-temperature capacitive strain measurement system

    NASA Technical Reports Server (NTRS)

    Wilson, E. J.; Egger, R. L.

    1975-01-01

    Capacitive strain gage and signal conditioning system measures stress-induced strain and cancels thermal expansion strain at temperatures to 1,500 F (815 C). Gage does not significantly restrain or reinforce specimen.

  5. Anelastic Strain Recovery Analysis Code

    Energy Science and Technology Software Center (ESTSC)

    1995-04-05

    ASR4 is a nonlinear least-squares regression of Anelastic Strain Recovery (ASR) data for the purpose of determining in situ stress orientations and magnitudes. ASR4 fits the viscoelastic model of Warpinski and Teufel to measure ASR data, calculates the stress orientations directly, and stress magnitudes if sufficient input data are available. The code also calculates the stress orientation using strain-rosette equations, and it calculates stress magnitudes using Blanton''s approach, assuming sufficient input data are available.

  6. Bacterial Strain Diversity Within Wounds

    PubMed Central

    Kirkup, Benjamin C.

    2015-01-01

    Significance: Rare bacterial taxa (taxa of low relative frequency) are numerous and ubiquitous in virtually any sample—including wound samples. In addition, even the high-frequency genera and species contain multiple strains. These strains, individually, are each only a small fraction of the total bacterial population. Against the view that wounds contain relatively few kinds of bacteria, this newly recognized diversity implies a relatively high rate of migration into the wound and the potential for diversification during infection. Understanding the biological and medical importance of these numerous taxa is an important new element of wound microbiology. Recent Advances: Only recently have these numerous strains been discovered; the technology to detect, identify, and characterize them is still in its infancy. Multiple strains of both gram-negative and gram-positive bacteria have been found in a single wound. In the few cases studied, the distribution of the bacteria suggests microhabitats and biological interactions. Critical Issues: The distribution of the strains, their phenotypic diversity, and their interactions are still largely uncharacterized. The technologies to investigate this level of genomic detail are still developing and have not been largely deployed to investigate wounds. Future Directions: As advanced metagenomics, single-cell genomics, and advanced microscopy develop, the study of wound microbiology will better address the complex interplay of numerous individually rare strains with both the host and each other. PMID:25566411

  7. Optical Strain Measurement System Development

    NASA Technical Reports Server (NTRS)

    Lant, C. T.

    1985-01-01

    Investigations of physical phenomena affecting the durability of SSME components require measurement systems operational in hostile environments. The need for such instrumentation caused the definition and operation of an optical strain measurement system. This optical strain measurement system based on the speckle shift method is being developed. This is a noncontact, automatic method of measuring surface strain in one dimension that corrects for error due to rigid body motion. It provides a gauge length of 1 to 2 mm and allows the region of interest on the test specimen to be mapped point by point. The output is a graphics map of the points inspected on the specimen; data points is stored in quasi-real time. This is the first phase of a multiphase effort in optical strain measurement. The speckle pattern created by the test specimen is interpreted as high order interference fringes resulting from a random diffraction grating, being the natural surface roughness of the specimen. Strain induced on the specimen causes a change in spacing of the surface roughness, which in turn shifts the position of the interference pattern (speckles).

  8. Genome Sequence of Pseudomonas chlororaphis Strain 189

    PubMed Central

    Town, Jennifer; Audy, Patrice; Boyetchko, Susan M.

    2016-01-01

    Pseudomonas chlororaphis strain 189 is a potent inhibitor of the growth of the potato pathogen Phytophthora infestans. We determined the complete, finished sequence of the 6.8-Mbp genome of this strain, consisting of a single contiguous molecule. Strain 189 is closely related to previously sequenced strains of P. chlororaphis. PMID:27340063

  9. Measuring mine roof bolt strains

    DOEpatents

    Steblay, Bernard J.

    1986-01-01

    A mine roof bolt and a method of measuring the strain in mine roof bolts of this type are disclosed. According to the method, a flat portion on the head of the mine roof bolt is first machined. Next, a hole is drilled radially through the bolt at a predetermined distance from the bolt head. After installation of the mine roof bolt and loading, the strain of the mine roof bolt is measured by generating an ultrasonic pulse at the flat portion. The time of travel of the ultrasonic pulse reflected from the hole is measured. This time of travel is a function of the distance from the flat portion to the hole and increases as the bolt is loaded. Consequently, the time measurement is correlated to the strain in the bolt. Compensation for various factors affecting the travel time are also provided.

  10. Spin transport in graphene superlattice under strain

    NASA Astrophysics Data System (ADS)

    Sattari, Farhad

    2016-09-01

    In this paper, the spin-dependent transport and the spin polarization properties for graphene superlattice with Rashba spin-orbit interaction (RSOI) in the presence of zigzag and armchair direction strain are studied. It is found that for the zigzag direction strain the angular range of the spin-inversion can be efficiently controlled by the strain strength. In addition, the efficiency of spin-inversion and spin-dependent conductivity decreases by increasing the strain strength. When the armchair direction strain is applied to a monolayer graphene superlattice the spin polarization can be observed and increases by increasing the strain strength, whereas for the zigzag direction strain it is zero.

  11. Taxonomy of oxalotrophic Methylobacterium strains

    NASA Astrophysics Data System (ADS)

    Sahin, Nurettin; Kato, Yuko; Yilmaz, Ferah

    2008-10-01

    Most of the oxalotrophic bacteria are facultative methylotrophs and play important ecological roles in soil fertility and cycling of elements. This study gives a detailed picture of the taxonomy and diversity of these bacteria and provides new information about the taxonomical variability within the genus Methylobacterium. Twelve mesophilic, pink-pigmented, and facultatively methylotrophic oxalate-oxidizing strains were included in this work that had been previously isolated from the soil and some plant tissues by the potassium oxalate enrichment method. The isolates were characterized using biochemical tests, cellular lipid profiles, spectral characteristics of carotenoid pigments, G+C content of the DNA, and 16S rDNA sequencing. The taxonomic similarities among the strains were analyzed using the simple matching ( S SM) and Jaccard ( S J) coefficients, and the UPGMA clustering algorithm. The phylogenetic position of the strains was inferred by the neighbor-joining method on the basis of the 16S rDNA sequences. All isolates were Gram-negative, facultatively methylotrophic, oxidase and catalase positive, and required no growth factors. Based on the results of numerical taxonomy, the strains formed four closely related clusters sharing ≥85% similarity. Analysis of the 16S rDNA sequences demonstrated that oxalotrophic, pink-pigmented, and facultatively methylotrophic strains could be identified as members of the genus Methylobacterium. Except for M. variabile and M. aquaticum, all of the Methylobacterium type strains tested had the ability of oxalate utilization. Our results indicate that the capability of oxalate utilization seems to be an uncommon trait and could be used as a valuable taxonomic criterion for differentiation of Methylobacterium species.

  12. Photoacoustic spectroscopy of Entamoeba histolytica strains

    NASA Astrophysics Data System (ADS)

    Acosta-Avalos, D.; Alvarado-Gil, J. J.; Silva, E. F.; Orozco, E.; de Menezes, L. F.; Vargas, H.

    2005-06-01

    Pathogenic and non-pathogenic strains of E. histolytica are studied using photoacoustic spectroscopy. It is shown that the pathogenic strain presents a spectrum similar to that of iron sulfur proteins. The non-pathogenic strain does not show any relevant absorption at the studied wavelength range. The differences observed between the optical absorption spectra of both strains opens the possibility of using photoacoustic spectroscopy as a reliable and simple technique to identify different types of E. histolytica strains.

  13. Trials with a Strain Gauge.

    ERIC Educational Resources Information Center

    Auty, Geoff

    1996-01-01

    Describes an attempt to match the goals of the practical demonstration of the use of a strain gauge and the technical applications of science and responding to student questions in early trials, while keeping within the level of electronics in advanced physics. (Author/JRH)

  14. Virulence of 32 Salmonella Strains in Mice

    PubMed Central

    Swearingen, Matthew C.; Porwollik, Steffen; Desai, Prerak T.; McClelland, Michael; Ahmer, Brian M. M.

    2012-01-01

    Virulence and persistence in the BALB/c mouse gut was tested for 32 strains of Salmonella enterica for which genome sequencing is complete or underway, including 17 serovars within subspecies I (enterica), and two representatives of each of the other five subspecies. Only serovar Paratyphi C strain BAA1715 and serovar Typhimurium strain 14028 were fully virulent in mice. Three divergent atypical Enteritidis strains were not virulent in BALB/c, but two efficiently persisted. Most of the other strains in all six subspecies persisted in the mouse intestinal tract for several weeks in multiple repeat experiments although the frequency and level of persistence varied considerably. Strains with heavily degraded genomes persisted very poorly, if at all. None of the strains tested provided immunity to Typhimurium infection. These data greatly expand on the known significant strain-to-strain variation in mouse virulence and highlight the need for comparative genomic and phenotypic studies. PMID:22558320

  15. Extremophiles and their application to veterinary medicine.

    PubMed

    Irwin, Jane Ann

    2010-01-01

    Extremophiles can be defined as organisms that can survive in extreme environments that cannot support mammalian life. They include microorganisms that can tolerate temperature extremes, extremes of pH, salinity, hydrostatic pressure and ionizing radiation, as well as low oxygen tension, desiccation and the presence of heavy metals. Psychrophilic organisms also include fish in polar waters and animals that withstand freezing. Rare examples of thermophilic pathogens exist, and the main category of extremophilic animal pathogens comprises psychrophilic and psychrotrophic microorganisms that cause fish diseases, e.g. Flavobacterium psychrophilum, Moritella viscosa, Aliivibrio wodanis and Aliivibrio salmonicida. The most widely known application of an extremophile product in veterinary medicine is DNA polymerase from thermophiles, which is a mainstay of PCR-based diagnostics for an extensive range of animal pathogens. DNA polymerases and other extremophile enzymes are also used in many molecular biology applications and animal genomics. Other extremophile products may find application in veterinary medicine in the future. These include enzymes in biosensors, compatible solutes in skin care products, drug excipients, treatments for respiratory disease, radioprotectants, peptide antibiotics, archaeal lipids for drug delivery and anti-cancer therapeutics. PMID:20662377

  16. Mapping microscale strain heterogeneity during creep deformation

    NASA Astrophysics Data System (ADS)

    Quintanilla Terminel, A.; Evans, J.

    2013-12-01

    We use a new technique combining microfabrication technology and compression tests to map the strain field at a micrometric scale in polycrystalline materials. This technique allows us to map local strain while measuring macroscopic strain and rheological properties, and provides insight into the relative contribution of various plasticity mechanisms under varying creep conditions. The micro-strain mapping technique was applied to Carrara Marble under different deformation regimes, at 300 MPa and temperatures ranging from 200 to 700 °C. At 600 °C, strain of 10%, and strain rate of 3e-5s-1, the local strain at twin and grain boundaries is up to 5 times greater than the average sample strain. At these conditions, strains averaged across a particular grain may vary by as much as 100%, but the strain field becomes more homogeneous with increasing strain. For example, for the analyzed experiments, the average wavelength of the strain heterogeneity is 70 micrometers at 10% strain, but increases to 110 micrometers at 20%. For a strain of 10%, heterogeneity is increased at slower strain rate (at 1e-5s-1). This increase seems to be associated with a more important role of twin boundary and grain boundary migration. As expected, twin densities are markedly greater at the lower temperature, though it is still unclear whether the relative twin volume is greater. However, twin strains are still important at 600 °C and accommodate an average of 14 % of the total strain at 10% deformation and a strain rate of 3e-5s-1.

  17. Material mechanical characterization method for multiple strains and strain rates

    DOEpatents

    Erdmand, III, Donald L.; Kunc, Vlastimil; Simunovic, Srdjan; Wang, Yanli

    2016-01-19

    A specimen for measuring a material under multiple strains and strain rates. The specimen including a body having first and second ends and a gage region disposed between the first and second ends, wherein the body has a central, longitudinal axis passing through the first and second ends. The gage region includes a first gage section and a second gage section, wherein the first gage section defines a first cross-sectional area that is defined by a first plane that extends through the first gage section and is perpendicular to the central, longitudinal axis. The second gage section defines a second cross-sectional area that is defined by a second plane that extends through the second gage section and is perpendicular to the central, longitudinal axis and wherein the first cross-sectional area is different in size than the second cross-sectional area.

  18. Modelling to very high strains

    NASA Astrophysics Data System (ADS)

    Bons, P. D.; Jessell, M. W.; Griera, A.; Evans, L. A.; Wilson, C. J. L.

    2009-04-01

    Ductile strains in shear zones often reach extreme values, resulting in typical structures, such as winged porphyroclasts and several types of shear bands. The numerical simulation of the development of such structures has so far been inhibited by the low maximum strains that numerical models can normally achieve. Typical numerical models collapse at shear strains in the order of one to three. We have implemented a number of new functionalities in the numerical platform "Elle" (Jessell et al. 2001), which significantly increases the amount of strain that can be achieved and simultaneously reduces boundary effects that become increasingly disturbing at higher strain. Constant remeshing, while maintaining the polygonal phase regions, is the first step to avoid collapse of the finite-element grid required by finite-element solvers, such as Basil (Houseman et al. 2008). The second step is to apply a grain-growth routine to the boundaries of polygons that represent phase regions. This way, the development of sharp angles is avoided. A second advantage is that phase regions may merge or become separated (boudinage). Such topological changes are normally not possible in finite element deformation codes. The third step is the use of wrapping vertical model boundaries, with which optimal and unchanging model boundaries are maintained for the application of stress or velocity boundary conditions. The fourth step is to shift the model by a random amount in the vertical direction every time step. This way, the fixed horizontal boundary conditions are applied to different material points within the model every time step. Disturbing boundary effects are thus averaged out over the whole model and not localised to e.g. top and bottom of the model. Reduction of boundary effects has the additional advantage that model can be smaller and, therefore, numerically more efficient. Owing to the combination of these existing and new functionalities it is now possible to simulate the

  19. Strains

    MedlinePlus

    Pulled muscle ... can include: Pain and difficulty moving the injured muscle Discolored and bruised skin Swelling ... if you still have pain. Rest the pulled muscle for at least a day. If possible, keep ...

  20. Strain tolerant microfilamentary superconducting wire

    DOEpatents

    Finnemore, D.K.; Miller, T.A.; Ostenson, J.E.; Schwartzkopf, L.A.; Sanders, S.C.

    1993-02-23

    A strain tolerant microfilamentary wire capable of carrying superconducting currents is provided comprising a plurality of discontinuous filaments formed from a high temperature superconducting material. The discontinuous filaments have a length at least several orders of magnitude greater than the filament diameter and are sufficiently strong while in an amorphous state to withstand compaction. A normal metal is interposed between and binds the discontinuous filaments to form a normal metal matrix capable of withstanding heat treatment for converting the filaments to a superconducting state. The geometry of the filaments within the normal metal matrix provides substantial filament-to-filament overlap, and the normal metal is sufficiently thin to allow supercurrent transfer between the overlapped discontinuous filaments but is also sufficiently thick to provide strain relief to the filaments.

  1. Computational strain gradient crystal plasticity

    NASA Astrophysics Data System (ADS)

    Niordson, Christian F.; Kysar, Jeffrey W.

    2014-01-01

    A numerical method for viscous strain gradient crystal plasticity theory is presented, which incorporates both energetic and dissipative gradient effects. The underlying minimum principles are discussed as well as convergence properties of the proposed finite element procedure. Three problems of plane crystal plasticity are studied: pure shear of a single crystal between rigid platens as well as plastic deformation around cylindrical voids in hexagonal close packed and face centered cubic crystals. Effective in-plane constitutive slip parameters for plane strain deformation of specifically oriented face centered cubic crystals are developed in terms of the crystallographic slip parameters. The effect on geometrically necessary dislocation structures introduced by plastic deformation is investigated as a function of the ratio of void radius to plasticity length scale.

  2. High Temperature Capacitive Strain Gage

    NASA Technical Reports Server (NTRS)

    Wnuk, Stephen P., Jr.; Wnuk, Stephen P., III; Wnuk, V. P.

    1990-01-01

    Capacitive strain gages designed for measurements in wind tunnels to 2000 F were built and evaluated. Two design approaches were followed. One approach was based on fixed capacitor plates with a movable ground plane inserted between the plates to effect differential capacitive output with strain. The second approach was based on movable capacitor plates suspended between sapphire bearings, housed in a rugged body, and arranged to operate as a differential capacitor. A sapphire bearing gage (1/4 in. diameter x 1 in. in size) was built with a range of 50,000 and a resolution of 200 microstrain. Apparent strain on Rene' 41 was less than + or - 1000 microstrain from room temperature to 2000 F. Three gage models were built from the Ground Plane Differential concept. The first was 1/4 in. square by 1/32 in. high and useable to 700 F. The second was 1/2 in. square by 1/16 in. high and useable to 1440 F. The third, also 1/2 in. square by 1/16 in. high was expected to operate in the 1600 to 2000 F range, but was not tested because time and funding ended.

  3. Design of a strain-gage probe

    NASA Technical Reports Server (NTRS)

    Kolba, V. M.; Vetter, D. L.

    1969-01-01

    Strain-gage spacer probe uses the deflection of a leaf spring to measure strain in a long, slender beam nondestructively. The selected gage is of the smallest practical size, as thin as possible and yet of a standard type.

  4. Strain stiffening in collagen I networks.

    PubMed

    Motte, Stéphanie; Kaufman, Laura J

    2013-01-01

    Biopolymer gels exhibit strain stiffening that is generally not seen in synthetic gels. Here, we investigate the strain-stiffening behavior in collagen I gels that demonstrate elasticity derived from a variety of sources including crosslinking through telopeptides, bundling through low-temperature gelation, and exogenous crosslinking with genipin. In all cases, it is found that these gels exhibit strain stiffening; in general, onset of strain stiffening occurs earlier, yield strain is lower, and degree of strain stiffening is smaller in higher concentration gels and in those displaying thick fibril bundles. Recovery after exposure to high strains is substantial and similar in all gels, suggesting that much of the stiffening comes from reversible network deformations. A key finding of this study is that collagen I gels of identical storage and loss moduli may display different nonlinear responses and different capacities to recover from high strain. PMID:23097228

  5. Turbulent Plane Wakes Subjected to Successive Strains

    NASA Technical Reports Server (NTRS)

    Rogers, Michael M.

    2003-01-01

    Six direct numerical simulations of turbulent time-evolving strained plane wakes have been examined to investigate the response of a wake to successive irrotational plane strains of opposite sign. The orientation of the applied strain field has been selected so that the flow is the time-developing analogue of a spatially developing wake evolving in the presence of either a favourable or an adverse streamwise pressure gradient. The magnitude of the applied strain rate a is constant in time t until the total strain e(sup at) reaches about four. At this point, a new simulation is begun with the sign of the applied strain being reversed (the original simulation is continued as well). When the total strain is reduced back to its original value of one, yet another simulation is begun with the sign of the strain being reversed again back to its original sign. This process is done for both initially "favourable" and initially "adverse" strains, providing simulations for each of these strain types from three different initial conditions. The evolution of the wake mean velocity deficit and width is found to be very similar for all the adversely strained cases, with both measures rapidly achieving exponential growth at the rate associated with the cross-stream expansive strain e(sup at). In the "favourably" strained cases, the wake widths approach a constant and the velocity deficits ultimately decay rapidly as e(sup -2at). Although all three of these cases do exhibit the same asymptotic exponential behaviour, the time required to achieve this is longer for the cases that have been previously adversely strained (by at approx. equals 1). These simulations confirm the generality of the conclusions drawn in Rogers (2002) regarding the response of plane wakes to strain. The evolution of strained wakes is not consistent with the predictions of classical self-similar analysis; a more general equilibrium similarity solution is required to describe the results. At least for the cases

  6. Installing strain gauges on composite material

    NASA Astrophysics Data System (ADS)

    Shull, Larry

    The evolution of the strain gage is traced and problems associated with their use on composite materials are discussed. It is believed that the use of the computer in strain gage data systems has caused some of the attitude problems in measuring strains in composite materials. The performance of strain gages on filament-wound Kevlar pressure vessels is discussed as well as graphite composites during 1984-1986, surface preparation, gage location alignment.

  7. Temperature-Compensating Inactive Strain Gauge

    NASA Technical Reports Server (NTRS)

    Moore, Thomas C., Sr.

    1993-01-01

    Thermal contribution to output of active gauge canceled. High-temperature strain gauges include both active gauge wires sensing strains and inactive gauge wires providing compensation for thermal contributions to gauge readings. Inactive-gauge approach to temperature compensation applicable to commercially available resistance-type strain gauges operating at temperatures up to 700 degrees F and to developmental strain gauges operating at temperatures up to 2,000 degrees F.

  8. Piezoelectric field in strained GaAs.

    SciTech Connect

    Chow, Weng Wah; Wieczorek, Sebastian Maciej

    2005-11-01

    This report describes an investigation of the piezoelectric field in strained bulk GaAs. The bound charge distribution is calculated and suitable electrode configurations are proposed for (1) uniaxial and (2) biaxial strain. The screening of the piezoelectric field is studied for different impurity concentrations and sample lengths. Electric current due to the piezoelectric field is calculated for the cases of (1) fixed strain and (2) strain varying in time at a constant rate.

  9. Strain Monitoring of Flexible Structures

    NASA Technical Reports Server (NTRS)

    Litteken, Douglas A.

    2017-01-01

    , such as tensile testing, fatigue testing, and shear testing, but common measurement techniques cannot be used on fabric. Measuring strain in a material and during a test is a critical parameter for an engineer to monitor the structure during the test and correlate to an analytical model. The ability to measure strain in fabric structures is a challenge for NASA. Foil strain gauges, for example, are commonplace on metallic structures testing, but are extremely difficult to interface with a fabric substrate. New strain measuring techniques need to be developed for use with fabric structures. This paper investigates options for measuring strain in fabric structures for both ground testing and in-space structural health monitoring. It evaluates current commercially available options and outlines development work underway to build custom measurement solutions for NASA's fabric structures.

  10. Haemophilus ducreyi Cutaneous Ulcer Strains Are Nearly Identical to Class I Genital Ulcer Strains

    PubMed Central

    Gangaiah, Dharanesh; Webb, Kristen M.; Humphreys, Tricia L.; Fortney, Kate R.; Toh, Evelyn; Tai, Albert; Katz, Samantha S.; Pillay, Allan; Chen, Cheng-Yen; Roberts, Sally A.; Munson, Robert S.; Spinola, Stanley M.

    2015-01-01

    Background Although cutaneous ulcers (CU) in the tropics is frequently attributed to Treponema pallidum subspecies pertenue, the causative agent of yaws, Haemophilus ducreyi has emerged as a major cause of CU in yaws-endemic regions of the South Pacific islands and Africa. H. ducreyi is generally susceptible to macrolides, but CU strains persist after mass drug administration of azithromycin for yaws or trachoma. H. ducreyi also causes genital ulcers (GU) and was thought to be exclusively transmitted by microabrasions that occur during sex. In human volunteers, the GU strain 35000HP does not infect intact skin; wounds are required to initiate infection. These data led to several questions: Are CU strains a new variant of H. ducreyi or did they evolve from GU strains? Do CU strains contain additional genes that could allow them to infect intact skin? Are CU strains susceptible to azithromycin? Methodology/Principal Findings To address these questions, we performed whole-genome sequencing and antibiotic susceptibility testing of 5 CU strains obtained from Samoa and Vanuatu and 9 archived class I and class II GU strains. Except for single nucleotide polymorphisms, the CU strains were genetically almost identical to the class I strain 35000HP and had no additional genetic content. Phylogenetic analysis showed that class I and class II strains formed two separate clusters and CU strains evolved from class I strains. Class I strains diverged from class II strains ~1.95 million years ago (mya) and CU strains diverged from the class I strain 35000HP ~0.18 mya. CU and GU strains evolved under similar selection pressures. Like 35000HP, the CU strains were highly susceptible to antibiotics, including azithromycin. Conclusions/Significance These data suggest that CU strains are derivatives of class I strains that were not recognized until recently. These findings require confirmation by analysis of CU strains from other regions. PMID:26147869

  11. Modal strain energies in COSMIC NASTRAN

    NASA Technical Reports Server (NTRS)

    Snyder, B. D.; Venkayya, V. B.

    1989-01-01

    A computer program was developed to take a NASTRAN output file from a normal modes analysis and calculate the modal strain energies of selected elements. The FORTRAN program can determine the modal strain energies for CROD, CBAR, CELAS, CTRMEM, CQDMEM2, and CSHEAR elements. Modal strain energies are useful in estimating damping in structures.

  12. Strains and Sprains Are a Pain

    MedlinePlus

    ... move the injured part, and you may even think you have broken a bone . How Does a Strain or Sprain Happen? Strains often happen when you put a lot of pressure on a muscle or you push it too far, such as when lifting a heavy object. Strains can be more likely to happen if ...

  13. Strainrange partitioning: A total strain range version

    NASA Technical Reports Server (NTRS)

    Halford, G. R.; Saltsman, J. F.

    1983-01-01

    Procedures are presented for expressing the Strainrange Partitioning (SRP) method for creep fatigue life prediction in terms of total strain range. Inelastic and elastic strain-range - life relations are summed to give total strain-range - life relations. The life components due to inelastic strains are dealt with using conventional SRP procedures while the life components due to elastic strains are expressed as families of time-dependent terms for each type of SRP cycle. Cyclic constitutive material behavior plays an important role in establishing the elastic strain-range - life relations as well as the partitioning of the inelastic strains. To apply the approach, however, it is not necessary to have to determine the magnitude of the inelastic strain range. The total strain SRP approach is evaluated and verified using two nickel base superalloys, AF2-1DA and Rene 95. Excellent agreement is demonstrated between observed and predicted cyclic lifetimes with 70 to 80 percent of the predicted lives falling within factors of two of the observed lives. The total strain-range SRP approach should be of considerable practical value to designers who are faced with creep-fatigue problems for which the inelastic strains cannot be calculated with sufficient accuracy to make reliable life predictions by the conventional inelastic strain range SRP approach.

  14. Siderotyping of Antarctic fluorescent Pseudomonas strains.

    PubMed

    Geoffroy, V A; Meyer, J M

    2004-07-01

    Five fluorescent Pseudomonas strains isolated from Antarctica have been previously recognized as producing three structurally different pyoverdines. In the present work, siderotyping procedures have been used to classify these strains, together with 1282 isolates of different origins, into siderovars. The strain biodiversity encountered within each siderovar, as well as the potential taxonomic value of the siderovars, are described and discussed. It is concluded that a majority of antarctic strains are commonly distributed worldwide. One strain, however, presenting a particular pyoverdine structure found in a unique other isolate, was apparently much more specific to cold environment. PMID:15559975

  15. Progress in optical strain measurement system development

    NASA Technical Reports Server (NTRS)

    Lant, Christian T.; Qaqish, Walid

    1987-01-01

    A laser speckle strain measurement system has been built and tested for the NASA Lewis Research Center. The system is based on a speckle shift technique, which automatically corrects for error due to rigid body motion, and provides a near real time measure of strain. The first stage of a multiphase effort to develop an optical strain gauge capable of mapping in two dimensions the strain on the surface of a hot specimen is discussed. The objectives of this first phase have been to provide a noncontact, one-dimensional, differential strain gauge for experimental purposes, and to determine the maximum open air temperature limit of the system.

  16. Strain Engineering of Transition Metal Dichalcogenides

    NASA Astrophysics Data System (ADS)

    Dadgar, Ali; Pasupathy, Abhay; Herman, Irving; Wang, Dennis; Kang, Kyungnam; Yang, Eui-Hyeok

    The application of strain to materials can cause changes to bandwidth, effective masses, degeneracies and even structural phases. In the case of the transition metal dichalcogenide (TMD) semiconductors, small strain (around 1 percent) is expected to change band gaps and mobilities, while larger strains are expected to cause phase changes from the triangular 2H phase to orthorhombic 1T' phases. We will describe experimental techniques to apply small and large (around 10 percent) strains to one or few layer samples of the TMD semiconductors, and describe the effect of the strain using optical (Raman, photoluminescence) and cryogenic transport techniques.

  17. Demonstration test of burner liner strain measurements using resistance strain gages

    NASA Technical Reports Server (NTRS)

    Grant, H. P.; Anderson, W. L.

    1984-01-01

    A demonstration test of burner liner strain measurements using resistance strain gages as well as a feasibility test of an optical speckle technique for strain measurement are presented. The strain gage results are reported. Ten Kanthal A-1 wire strain gages were used for low cycle fatigue strain measurements to 950 K and .002 apparent strain on a JT12D burner can in a high pressure (10 atmospheres) burner test. The procedure for use of the strain gages involved extensive precalibration and postcalibration to correct for cooling rate dependence, drift, and temperature effects. Results were repeatable within + or - .0002 to .0006 strain, with best results during fast decels from 950 K. The results agreed with analytical prediction based on an axisymmetric burner model, and results indicated a non-uniform circumferential distribution of axial strain, suggesting temperature streaking.

  18. Strain flexibility identification of bridges from long-gauge strain measurements

    NASA Astrophysics Data System (ADS)

    Zhang, Jian; Xia, Qi; Cheng, YuYao; Wu, ZhiShen

    2015-10-01

    Strain flexibility, defined as the strain response of a structure's element to a unit input force, is import for structural safety evaluation, but its identification is seldom investigated. A novel long-gauge fiber optic sensor has been developed to measure the averaged strain within a long gauge length. Its advantage of measuring both local and global information of the structure offers an excellent opportunity of developing the strain flexibility identification theory. In this article, the method to identify structural strain flexibility from long-gauge dynamic strain measurements is proposed. It includes the following main steps: (a) macro strain frequency response function (FRF) estimation from macro strain measurements and its feature characterization; (b) general strain modal parameter identification; (c) scaling factor calculation, and (d) strain flexibility identification. Numerical and experimental examples successfully verify the effectiveness of the proposed method.

  19. Job Strain in Physical Therapists

    PubMed Central

    Campo, Marc A.; Weiser, Sherri; Koenig, Karen L.

    2009-01-01

    Background: Job stress has been associated with poor outcomes. In focus groups and small-sample surveys, physical therapists have reported high levels of job stress. Studies of job stress in physical therapy with larger samples are needed. Objective: The purposes of this study were: (1) to determine the levels of psychological job demands and job control reported by physical therapists in a national sample, (2) to compare those levels with national norms, and (3) to determine whether high demands, low control, or a combination of both (job strain) increases the risk for turnover or work-related pain. Design: This was a prospective cohort study with a 1-year follow-up period. Methods: Participants were randomly selected members of the American Physical Therapy Association (n=882). Exposure assessments included the Job Content Questionnaire (JCQ), a commonly used instrument for evaluation of the psychosocial work environment. Outcomes included job turnover and work-related musculoskeletal disorders. Results: Compared with national averages, the physical therapists reported moderate job demands and high levels of job control. About 16% of the therapists reported changing jobs during follow-up. Risk factors for turnover included high job demands, low job control, job strain, female sex, and younger age. More than one half of the therapists reported work-related pain. Risk factors for work-related pain included low job control and job strain. Limitations: The JCQ measures only limited dimensions of the psychosocial work environment. All data were self-reported and subject to associated bias. Conclusions: Physical therapists’ views of their work environments were positive, including moderate levels of demands and high levels of control. Those therapists with high levels of demands and low levels of control, however, were at increased risk for both turnover and work-related pain. Physical therapists should consider the psychosocial work environment, along with other

  20. Straining graphene using thin film shrinkage methods.

    PubMed

    Shioya, Hiroki; Craciun, Monica F; Russo, Saverio; Yamamoto, Michihisa; Tarucha, Seigo

    2014-03-12

    Theoretical works suggest the possibility and usefulness of strain engineering of graphene by predicting remarkable properties, such as Dirac cone merging, bandgap opening and pseudo magnetic field generation. However, most of these predictions have not yet been confirmed because it is experimentally difficult to control the magnitude and type (e.g., uniaxial, biaxial, and so forth) of strain in graphene devices. Here we report two novel methods to apply strain without bending the substrate. We employ thin films of evaporated metal and organic insulator deposited on graphene, which shrink after electron beam irradiation or heat application. These methods make it possible to apply both biaxial strain and in-plane isotropic compressive strain in a well-controlled manner. Raman spectroscopy measurements show a clear splitting of the degenerate states of the G-band in the case of biaxial strain, and G-band blue shift without splitting in the case of in-plane isotropic compressive strain. In the case of biaxial strain application, we find out the ratio of the strain component perpendicular to the stretching direction is at least three times larger than what was previously observed, indicating that shrinkage of the metal or organic insulator deposited on graphene induces both tensile and compressive strain in this atomically thin material. Our studies present for the first time a viable way to apply strain to graphene without the need to bend the substrate. PMID:24490629

  1. Straining Graphene Using Thin Film Shrinkage Methods

    PubMed Central

    2014-01-01

    Theoretical works suggest the possibility and usefulness of strain engineering of graphene by predicting remarkable properties, such as Dirac cone merging, bandgap opening and pseudo magnetic field generation. However, most of these predictions have not yet been confirmed because it is experimentally difficult to control the magnitude and type (e.g., uniaxial, biaxial, and so forth) of strain in graphene devices. Here we report two novel methods to apply strain without bending the substrate. We employ thin films of evaporated metal and organic insulator deposited on graphene, which shrink after electron beam irradiation or heat application. These methods make it possible to apply both biaxial strain and in-plane isotropic compressive strain in a well-controlled manner. Raman spectroscopy measurements show a clear splitting of the degenerate states of the G-band in the case of biaxial strain, and G-band blue shift without splitting in the case of in-plane isotropic compressive strain. In the case of biaxial strain application, we find out the ratio of the strain component perpendicular to the stretching direction is at least three times larger than what was previously observed, indicating that shrinkage of the metal or organic insulator deposited on graphene induces both tensile and compressive strain in this atomically thin material. Our studies present for the first time a viable way to apply strain to graphene without the need to bend the substrate. PMID:24490629

  2. Numerical demonstration of MEMS strain sensor

    NASA Astrophysics Data System (ADS)

    Saboonchi, Hossain; Ozevin, Didem

    2012-04-01

    Silicon has piezoresistive property that allows designing strain sensor with higher gauge factor compared to conventional metal foil gauges. The sensing element can be micro-scale using MEMS, which minimizes the effect of strain gradient on measurement at stress concentration regions such as crack tips. The challenge of MEMS based strain sensor design is to decouple the sensing element from substrate for true strain measurement and to compensate the temperature effect on the piezoresistive coefficients of silicon. In this paper, a family of MEMS strain sensors with different geometric designs is introduced. Each strain sensor is made of single crystal silicon and manufactured using deposition/ etching/oxidation steps on a n- doped silicon wafer in (100) plane. The geometries include sensing element connected to the free heads of U shape substrate, a set of two or more sensing elements in an array in order to capture strain gradients and two directional sensors. The response function and the gauge factor of the strain sensors are identified using multi-physics models that combine structural and electrical behaviors of sensors mounted on a strained structure. The relationship between surface strain and strain at microstructure is identified numerically in order to include the relationship in the response function calculation.

  3. Thick film wireless and powerless strain sensor

    NASA Astrophysics Data System (ADS)

    Jia, Yi; Sun, Ke

    2006-03-01

    The development of an innovative wireless strain sensing technology has a great potential to extend its applications in manufacturing, civil engineering and aerospace industry. This paper presents a novel wireless and powerless strain sensor with a multi-layer thick film structure. The sensor employs a planar inductor (L) and capacitive transducer (C) resonant tank sensing circuit, and a strain sensitive material of a polarized polyvinylidene fluoride (PVDF) piezoelectric thick film to realize the wireless strain sensing by strain to frequency conversion and to receive radio frequency electromagnetic energy for powering the sensor. The prototype sensor was designed and fabricated. The results of calibration on a strain constant cantilever beam show a great linearity and sensitivity about 0.0013 in a strain range of 0-0.018.

  4. Strain engineering of graphene: a review

    NASA Astrophysics Data System (ADS)

    Si, Chen; Sun, Zhimei; Liu, Feng

    2016-02-01

    Graphene has intrigued the science community by many unique properties not found in conventional materials. In particular, it is the strongest two-dimensional material ever measured, being able to sustain reversible tensile elastic strain larger than 20%, which yields an interesting possibility to tune the properties of graphene by strain and thus opens a new field called ``straintronics''. In this article, the current progress in the strain engineering of graphene is reviewed. We first summarize the strain effects on the electronic structure and Raman spectra of graphene. We then highlight the electron-phonon coupling greatly enhanced by the biaxial strain and the strong pseudomagnetic field induced by the non-uniform strain with specific distribution. Finally, the potential application of strain-engineering in the self-assembly of foreign atoms on the graphene surface is also discussed. Given the short history of graphene straintronics research, the current progress has been notable, and many further advances in this field are expected.

  5. Differential receptor usage by measles virus strains.

    PubMed

    Bartz, R; Firsching, R; Rima, B; ter Meulen, V; Schneider-Schaulies, J

    1998-05-01

    Recently, we demonstrated that infection of cells with all measles virus (MV) strains tested was inhibited by antibodies against CD46, although not all strains caused downregulation of the MV receptor CD46 from the surface of human cells. We now show that infection of cells with MV strain WTFb, a variant of wild-type isolate WTF which has been isolated and propagated on human BJAB cells, is not inhibited by antibodies against CD46. In contrast, infection of cells with the closely related strain WTFv, a Vero cell-adapted variant of WTF, is inhibited by antibodies against CD46. This observation led us to investigate the interaction of these viruses and the vaccine strain Edmonston (Edm) with CD46 and target cells. Cellular receptors with high affinity binding for WTFb are present on BJAB cells, but not on transfected CD46-expressing CHO cells. In contrast to the Edm strain, virus particles and solubilized envelope glycoproteins of WTFb have a very limited binding capacity to CD46. Furthermore, we show that recombinant soluble CD46 either does not bind, or binds very weakly, to WTFb glycoproteins expressed on the cell surface. Our findings indicate that wild-type MV strain WTFb and vaccine strain Edm use different binding sites on human cells. In addition, the results suggest that MV strains may alternatively use CD46 and an unknown molecule as receptors, and that the degree of usage of both receptors may be MV strain-specific. PMID:9603316

  6. Comparison of Strain Rosettes and Digital Image Correlation for Measuring Vertebral Body Strain.

    PubMed

    Gustafson, Hannah; Siegmund, Gunter; Cripton, Peter

    2016-05-01

    Strain gages are commonly used to measure bone strain, but only provide strain at a single location. Digital image correlation (DIC) is an optical technique that provides the displacement, and therefore strain, over an entire region of interest on the bone surface. This study compares vertebral body strains measured using strain gages and DIC. The anterior surfaces of 15 cadaveric porcine vertebrae were prepared with a strain rosette and a speckled paint pattern for DIC. The vertebrae were loaded in compression with a materials testing machine, and two high-resolution cameras were used to image the anterior surface of the bones. The mean noise levels for the strain rosette and DIC were 1 με and 24 με, respectively. Bland-Altman analysis was used to compare strain from the DIC and rosette (excluding 44% of trials with some evidence of strain rosette failure or debonding); the mean difference ± 2 standard deviations (SDs) was -108 με ± 702 με for the minimum (compressive) principal strain and -53 με ± 332 με for the maximum (tensile) principal strain. Although the DIC has higher noise, it avoids the relatively high risk we observed of strain gage debonding. These results can be used to develop guidelines for selecting a method to measure strain on bone. PMID:26902321

  7. Determining Micromechanical Strain in Nitinol

    SciTech Connect

    Strasberg, Matthew; /SLAC

    2006-09-27

    Nitinol is a superelastic alloy made of equal parts nickel and titanium. Due to its unique shape memory properties, nitinol is used to make medical stents, lifesaving devices used to allow blood flow in occluded arteries. Micromechanical models and even nitinol-specific finite element analysis (FEA) software are insufficient for unerringly predicting fatigue and resultant failure. Due to the sensitive nature of its application, a better understanding of nitinol on a granular scale is being pursued through X-ray diffraction techniques at the Stanford Synchrotron Radiation Laboratory (SSRL) at the Stanford Linear Accelerator Center (SLAC). Through analysis of powder diffraction patterns of nitinol under increasing tensile loads, localized strain can be calculated. We compare these results with micromechanical predictions in order to advance nitinol-relevant FEA tools. From this we hope to gain a greater understanding of how nitinol fatigues under multi-axial loads.

  8. Modeling competition between yeast strains

    NASA Astrophysics Data System (ADS)

    de Gee, Maarten; van Mourik, Hilda; de Visser, Arjan; Molenaar, Jaap

    2016-04-01

    We investigate toxin interference competition between S. cerevisiae colonies grown on a solid medium. In vivo experiments show that the outcome of this competition depends strongly on nutrient availability and cell densities. Here we present a new model for S. cerevisiae colonies, calculating the local height and composition of the colonies. The model simulates yeast colonies that show a good fit to experimental data. Simulations of colonies that start out with a homogeneous mixture of toxin producing and toxin sensitive cells can display remarkable pattern formation, depending on the initial ratio of the strains. Simulations in which the toxin producing and toxin sensitive species start at nearby positions clearly show that toxin production is advantageous.

  9. Fiber-optic polarimetric strain gauge

    NASA Astrophysics Data System (ADS)

    Bock, Wojtek J.; Wolinski, Tomasz R.

    A prototype fiber-optic polarimetric strain gauge based on the polarization mode coupling that occurs in highly birefringent optical fibers under the influence of axial strain is presented. Measurement set-up for a bonded strain gauge and its metrological characteristics are discussed together with the interpretation of observed physical effects in terms of changes in beat-length parameter under axial strain. The device is far more sensitive than conventional strain gauges, and can also be readily adjusted to a specified range of strain through an appropriate choice of fiber length and optical signal wavelength. The temperature drift of the device can be compensated in a straightforward procedure. The device is immune to electromagnetic interference, and is intrinsically safe in electrically dangerous, hazardous or explosive environments. Another attraction of this technology is its direct compatibility with fiber-optic telemetry, optical data transmission systems and multiplexing / demultiplexing technology.

  10. Sensor for Measuring Strain in Textile

    PubMed Central

    Mattmann, Corinne; Clemens, Frank; Tröster, Gerhard

    2008-01-01

    In this paper a stain sensor to measure large strain (80%) in textiles is presented. It consists of a mixture of 50wt-% thermoplastic elastomer (TPE) and 50wt-% carbon black particles and is fiber-shaped with a diameter of 0.315mm. The attachment of the sensor to the textile is realized using a silicone film. This sensor configuration was characterized using a strain tester and measuring the resistance (extension-retraction cycles): It showed a linear resistance response to strain, a small hysteresis, no ageing effects and a small dependance on the strain velocity. The total mean error caused by all these effects was ±5.5% in strain. Washing several times in a conventional washing machine did not influence the sensor properties. The paper finishes by showing an example application where 21 strain sensors were integrated into a catsuit. With this garment, 27 upper body postures could be recognized with an accuracy of 97%.

  11. An experimental evaluation of apparent strain from foil strain gauges attached to carbon composite substrates

    NASA Technical Reports Server (NTRS)

    Scott, B. R.; Lanius, S. J.; Auer, C. W.

    1987-01-01

    An experimental evaluation of apparent thermal strains is conducted using various combinations of substrate/gauge/attachment structure and redundant high temperature extensometry. It is found that the extensometry could either confirm independent measurements of the substrate's thermal expansion, or quantify nonzero mechanical strains resulting from uncertain material behavior and boundary conditions. Apparent strain and thermal expansion behavior data can then be used to modify the raw strain measurements in order to determine either stress producing or total strains. Limitation of the correction procedure for the three selected strain gauges is noted which is due to relatively large gauge/attachment variability.

  12. Mechanical strain and degradation of laser heterostructures

    NASA Astrophysics Data System (ADS)

    Ptashchenko, Alexander A.; Ptashchenko, Fedor A.; Maslejeva, Natalia V.; Sadova, Galina V.

    2001-02-01

    The effect of mechanical strain on degradation processes in GaAs-AlGaAs laser heterostructures (LHS) with stripe geometry and in light emitting diodes (LED) was experimentally studied. The strain was produced either by axial pressure or by indentation with a Wickers pyramid. We show that degradation affects the degree of polarization and the far-field distribution of laser emission. The effect of strain on the degradation intensity is estimated.

  13. Polyphasic characterization of xanthomonas strains from onion.

    PubMed

    Gent, David H; Schwartz, Howard F; Ishimaru, Carol A; Louws, Frank J; Cramer, Robert A; Lawrence, Christopher B

    2004-02-01

    ABSTRACT Xanthomonas leaf blight has become an increasingly important disease of onion, but the diversity among Xanthomonas strains isolated from onion is unknown, as is their relationship to other species and pathovars of Xanthomonas. Forty-nine Xanthomonas strains isolated from onion over 27 years from 10 diverse geographic regions were characterized by pathogenicity to onion and dry bean, fatty acid profiles, substrate utilization patterns (Biolog), bactericide resistance, repetitive sequence-based polymerase chain reaction fingerprinting, rDNA internally transcribed spacer (ITS) region, and hrp b6 gene sequencing. Multiplication of onion Xanthomonas strain R-O177 was not different from X. axonopodis pv. phaseoli in dry bean, but typical common bacterial blight disease symptoms were absent in dry bean. Populations from each geographical region were uniformly sensitive to 100 mug of CuSO(4), 100 mug of ZnSO(4), and 100 mug of streptomycin sulfate per ml. Biolog substrate utilization and fatty acid profiles revealed close phenoltypic relatedness between onion strains of Xanthomonas and X. axonopodis pv. dieffenbachiae (57% of strains) and X. arboricola pv. poinsettiicola (37% of strains), respectively. A logistic regression model based on fatty acid composition and substrate utilization classified 69% of strains into their geographical region of origin. Sequencing of a portion of the hrp B6 gene from 24 strains and ITS region from 25 strains revealed greater than 97% sequence similarity among strains. DNA fingerprinting revealed five genotype groups within onion strains of Xanthomonas and a high degree of genetic diversity among geographical regions of origin. Based on pathogenicity to onion, carbon substrate utilization, fatty acid profiles, rDNA genetic diversity, and genomic fingerprints, we conclude that the strains examined in this study are pathovar X. axonopodis pv. allii. Implications of genetic and phenotypic diversity within X. axonopodis pv. allii are

  14. AN ORGANOTYPIC UNIAXIAL STRAIN MODEL USING MICROFLUIDICS

    PubMed Central

    Dollé, Jean-Pierre; Morrison, Barclay; Schloss, Rene R.; Yarmush, Martin L.

    2012-01-01

    Traumatic brain injuries are the leading cause of disability each year in the US. The most common and devastating consequence is the stretching of axons caused by shear deformation that occurs during rotational acceleration of the brain during injury. The injury effects on axonal molecular and functional events are not fully characterized. We have developed a strain injury model that maintains the three dimensional cell architecture and neuronal networks found in vivo with the ability to visualize individual axons and their response to a mechanical injury. The advantage of this model is that it can apply uniaxial strains to axons that make functional connections between two organotypic slices and injury responses can be observed in real-time and over long term. This uniaxial strain model was designed to be capable of applying an array of mechanical strains at various rates of strain, thus replicating a range of modes of axonal injury. Long term culture, preservation of slice and cell orientation, and slice-slice connection on the device was demonstrated. The device has the ability to strain either individual axons or bundles of axons through the control of microchannel dimensions. The fidelity of the model was verified by observing characteristic responses to various strain injuries which included axonal beading, delayed elastic effects and breakdown in microtubules. Microtubule breakdown was shown to be dependent on the degree of the applied strain field, where maximal breakdown was observed at peak strain and minimal breakdown is observed at low strain. This strain injury model could be a powerful tool in assessing strain injury effects on functional axonal connections. PMID:23233120

  15. High strain rate damage of Carrara marble

    NASA Astrophysics Data System (ADS)

    Doan, Mai-Linh; Billi, Andrea

    2011-10-01

    Several cases of rock pulverization have been observed along major active faults in granite and other crystalline rocks. They have been interpreted as due to coseismic pervasive microfracturing. In contrast, little is known about pulverization in carbonates. With the aim of understanding carbonate pulverization, we investigate the high strain rate (c. 100 s-1) behavior of unconfined Carrara marble through a set of experiments with a Split Hopkinson Pressure Bar. Three final states were observed: (1) at low strain, the sample is kept intact, without apparent macrofractures; (2) failure is localized along a few fractures once stress is larger than 100 MPa, corresponding to a strain of 0.65%; (3) above 1.3% strain, the sample is pulverized. Contrary to granite, the transition to pulverization is controlled by strain rather than strain rate. Yet, at low strain rate, a sample from the same marble displayed only a few fractures. This suggests that the experiments were done above the strain rate transition to pulverization. Marble seems easier to pulverize than granite. This creates a paradox: finely pulverized rocks should be prevalent along any high strain zone near faults through carbonates, but this is not what is observed. A few alternatives are proposed to solve this paradox.

  16. Optical fiber sensor technique for strain measurement

    DOEpatents

    Butler, Michael A.; Ginley, David S.

    1989-01-01

    Laser light from a common source is split and conveyed through two similar optical fibers and emitted at their respective ends to form an interference pattern, one of the optical fibers having a portion thereof subjected to a strain. Changes in the strain cause changes in the optical path length of the strain fiber, and generate corresponding changes in the interference pattern. The interference pattern is received and transduced into signals representative of fringe shifts corresponding to changes in the strain experienced by the strained one of the optical fibers. These signals are then processed to evaluate strain as a function of time, typical examples of the application of the apparatus including electrodeposition of a metallic film on a conductive surface provided on the outside of the optical fiber being strained, so that strains generated in the optical fiber during the course of the electrodeposition are measurable as a function of time. In one aspect of the invention, signals relating to the fringe shift are stored for subsequent processing and analysis, whereas in another aspect of the invention the signals are processed for real-time display of the strain changes under study.

  17. Diversity among Streptomyces Strains Causing Potato Scab

    PubMed Central

    Doering-Saad, Christiane; Kämpfer, Peter; Manulis, Shulamit; Kritzman, Giora; Schneider, Jörg; Zakrzewska-Czerwinska, Jolanta; Schrempf, Hildgund; Barash, Isaac

    1992-01-01

    Eighty Streptomyces isolates, including 35 potato scab-inducing strains and 12 reference strains of Streptomyces scabies, were physiologically characterized by a total of 329 miniaturized tests. Overall similarities of all strains were determined by numerical taxonomy, with the unweighted average linkage (UPGMA) algorithm and simple matching (Ssm) and Jaccard (Sj) coefficients used as measures for similarity. Three cluster groups (A to C) were defined at a similarity level of 80.1% (Ssm); these groups contained 14 clusters and 24 unclustered strains defined at a similarity level of 86.5% (Ssm). Cluster group A contained strains phenotypically related to S. griseus or S. exfoliatus, whereas cluster group B contained strains which were phenotypically related to S. violaceus or S. rochei. The majority of the pathogenic isolates and reference strains were assigned to S. violaceus (57%) and S. griseus (22%). A DNA probe derived from the rRNA operon of S. coelicolor IMET 40271 was used to detect restriction fragment length polymorphisms (RELPs) among 40 pathogenic and nonpathogenic Streptomyces isolates. Southern blots revealed a high degree of diversity among the pathogenic strains tested. No significant correlation between numerical classification and RFLP grouping of Streptomyces strains could be revealed. The results obtained suggest that RFLP data are of minor importance in classification of Streptomyces species and that genes for pathogenicity determinants are spread among different Streptomyces species by mobilizable elements. Images PMID:16348823

  18. Distributed strain monitoring for bridges: temperature effects

    NASA Astrophysics Data System (ADS)

    Regier, Ryan; Hoult, Neil A.

    2014-03-01

    To better manage infrastructure assets as they reach the end of their service lives, quantitative data is required to better assess structural behavior and allow for more informed decision making. Distributed fiber optic strain sensors are one sensing technology that could provide comprehensive data for use in structural assessments as these systems potentially allow for strain to be measured with the same accuracy and gage lengths as conventional strain sensors. However, as with many sensor technologies, temperature can play an important role in terms of both the structure's and sensor's performance. To investigate this issue a fiber optic distributed strain sensor system was installed on a section of a two span reinforced concrete bridge on the TransCanada Highway. Strain data was acquired several times a day as well as over the course of several months to explore the effects of changing temperature on the data. The results show that the strain measurements are affected by the bridge behavior as a whole. The strain measurements due to temperature are compared to strain measurements that were taken during a load test on the bridge. The results show that even a small change in temperature can produce crack width and strain changes similar to those due to a fully loaded transport truck. Future directions for research in this area are outlined.

  19. Strain induced fragility transition in metallic glass

    PubMed Central

    Yu, Hai-Bin; Richert, Ranko; Maaß, Robert; Samwer, Konrad

    2015-01-01

    Relaxation dynamics are the central topic in glassy physics. Recently, there is an emerging view that mechanical strain plays a similar role as temperature in altering the relaxation dynamics. Here, we report that mechanical strain in a model metallic glass modulates the relaxation dynamics in unexpected ways. We find that a large strain amplitude makes a fragile liquid become stronger, reduces dynamical heterogeneity at the glass transition and broadens the loss spectra asymmetrically, in addition to speeding up the relaxation dynamics. These findings demonstrate the distinctive roles of strain compared with temperature on the relaxation dynamics and indicate that dynamical heterogeneity inherently relates to the fragility of glass-forming materials. PMID:25981888

  20. Measurement of Sorption-Induced Strain

    SciTech Connect

    Eric P. Robertson; Richard L. Christiansen

    2005-05-01

    Strain caused by the adsorption of gases was measured in samples of subbituminous coal from the Powder River basin of Wyoming, U.S.A. and high-volatile bituminous coal from east-central Utah, U.S.A. using an apparatus developed jointly at the Idaho National Laboratory (Idaho Falls, Idaho, U.S.A.) and Colorado School of Mines (Golden, Colorado, U.S.A.). The apparatus can be used to measure strain on multiple small coal samples based on the optical detection of the longitudinal strain instead of the more common usage of strain gauges, which require larger samples and longer equilibration times. With this apparatus, we showed that the swelling and shrinkage processes were reversible and that accurate strain data could be obtained in a shortened amount of time. A suite of strain curves was generated for these coals using gases that included carbon dioxide, nitrogen, methane, helium, and various mixtures of these gases. A Langmuir-type equation was applied to satisfactorily model the strain data obtained for pure gases. The sorption-induced strain measured in the subbituminous coal was larger than the high-volatile bituminous coal for all gases tested over the range of pressures used in the experimentation, with the CO2-induced strain for the subbituminous coal over twice as great at the bituminous coal.

  1. Lattice Strain Due to an Atomic Vacancy

    PubMed Central

    Li, Shidong; Sellers, Michael S.; Basaran, Cemal; Schultz, Andrew J.; Kofke, David A.

    2009-01-01

    Volumetric strain can be divided into two parts: strain due to bond distance change and strain due to vacancy sources and sinks. In this paper, efforts are focused on studying the atomic lattice strain due to a vacancy in an FCC metal lattice with molecular dynamics simulation (MDS). The result has been compared with that from a continuum mechanics method. It is shown that using a continuum mechanics approach yields constitutive results similar to the ones obtained based purely on molecular dynamics considerations. PMID:19582230

  2. Inflatable device for installing strain gage bridges

    NASA Technical Reports Server (NTRS)

    Cook, C. E.; Smith, G. E.; Monaghan, R. C. (Inventor)

    1983-01-01

    Methods and devices for installing in a tubular shaft multiple strain gages are disclosed with focus on a method and a device for pneumatically forcing strain gages into seated engagement with the internal surfaces of a tubular shaft in an installation of multiple strain gages in a tubular shaft. The strain gages or other electron devices are seated in a template-like component which is wrapped about a pneumatically expansible body. The component is inserted into a shaft and the body is pneumatically expanded after a suitable adhesive was applied to the surfaces.

  3. Acceleration and Velocity Sensing from Measured Strain

    NASA Technical Reports Server (NTRS)

    Pak, Chan-Gi; Truax, Roger

    2016-01-01

    A simple approach for computing acceleration and velocity of a structure from the strain is proposed in this study. First, deflection and slope of the structure are computed from the strain using a two-step theory. Frequencies of the structure are computed from the time histories of strain using a parameter estimation technique together with an Autoregressive Moving Average model. From deflection, slope, and frequencies of the structure, acceleration and velocity of the structure can be obtained using the proposed approach. shape sensing, fiber optic strain sensor, system equivalent reduction and expansion process.

  4. Predictions Of Fatigue Damage From Strain Histories

    NASA Technical Reports Server (NTRS)

    Sire, Robert A.; Besuner, Philip M.; Toomey, Tim

    1989-01-01

    Semiempirical mathematical model of fatigue damage in stressed objects uses experimental histories of strains in those objects to predict fatigue lives. Accounts for initiation and propagation of fatigue cracks on cycle-by-cycle basis. Measured strain history first digitized, then converted to history of turning-point strains for purposes of analysis. Data between turning points not used. When model calibrated against proper test data for each type of object characterized, its predictions of fatigue lives superior to statistical models as one based on root-mean-square strain.

  5. Strain accommodation in inelastic deformation of glasses

    NASA Astrophysics Data System (ADS)

    Murali, P.; Ramamurty, U.; Shenoy, Vijay B.

    2007-01-01

    Motivated by recent experiments on metallic glasses, we examine the micromechanisms of strain accommodation including crystallization and void formation during inelastic deformation of glasses by employing molecular statics simulations. Our atomistic simulations with Lennard-Jones-like potentials suggests that a softer short range interaction between atoms favors crystallization. Compressive hydrostatic strain in the presence of a shear strain promotes crystallization whereas a tensile hydrostatic strain is found to induce voids. The deformation subsequent to the onset of crystallization includes partial reamorphization and recrystallization, suggesting important atomistic mechanisms of plastic dissipation in glasses.

  6. Investigation of a noncontact strain measurement technique

    SciTech Connect

    Damiano, B.; Talarico, L.J.

    1996-05-01

    The goal of this project was to investigate the feasibility of a new noncontact technique for directly and continuously monitoring peak strain in rotating components. The technique utilizes the unique strain-sensitive magnetic material properties of transformation Induced Plasticity (TRIP) steel alloys to measure strain. These alloys are weakly magnetic when unstrained but become strongly ferromagnetic after mechanical deformation. A computer study was performed to determine whether the strain-induced change in the magnetic material properties of a TRIP steel gage bonded to a rotating component would cause significant perturbations in the magnetic flux of a stationary electromagnet. The effects of strain level, distance between the rotating component and the stationary electromagnet, and motion-induced eddy currents on flux perturbation magnitude were investigated. The calculated results indicate that a TRIP steel strain sensing element can cause a significant perturbation in the magnetic flux of a stationary electromagnet. The magnetic flux perturbation magnitude was found to be inversely proportional to the distance between the magnet face and the TRIP steel element and directly proportional to the TRIP steel strain level. The effect of motion-induced eddy currents on the magnetic flux was found to be negligible. It appears that the technique can be successfully applied to measure peak strain in rotating components; however, the sensitivity of the magnetic flux perturbation magnitude to the distance between the strain sensing element and the electromagnet may require making an independent proximity measurement.

  7. True stress-strain curves of cold worked stainless steel over a large range of strains

    NASA Astrophysics Data System (ADS)

    Kamaya, Masayuki; Kawakubo, Masahiro

    2014-08-01

    True stress-strain curves for cold worked stainless steel were obtained over a range of strains that included a large strain exceeding the strain for the tensile strength (post-necking strain). A specified testing method was used to obtain the stress-strain curves in air at room temperature. The testing method employed the digital image correlation (DIC) technique and iterative finite element analyses (FEA) and was referred to as IFD (Iteration FEA procedure based on DIC measurement) method. Although hourglass type specimens have been previously used for the IFD method, in this study, plate specimens with a parallel gage section were used to obtain accurate yield and tensile strengths together with the stress-strain curves. The stress-strain curves including the post-necking strain were successfully obtained by the IFD method, and it was shown that the stress-strain curves for different degrees of cold work collapsed onto a single curve when the offset strain was considered. It was also shown that the Swift type constitutive equation gave good regression for the true stress-strain curves including the post-necking strain regardless of the degree of cold work, although the Ramberg-Osgood type constitutive equation showed poor fit. In the regression for the Swift type constitutive equation, the constant for power law could be assumed to be nS = 0.5.

  8. Strain Rate Dependency of Coarse Crystal Marble Under Uniaxial Compression: Strength, Deformation and Strain Energy

    NASA Astrophysics Data System (ADS)

    Li, Yanrong; Huang, Da; Li, Xi'an

    2014-07-01

    Strain rate during testing, uniaxial or triaxial, has important influence on the measured mechanical properties of rocks. Uniaxial compression tests were performed at nine pre-specified static-to-quasistatic strain rates (ranging from 1 × 10-5 to 1 × 10-1 s-1) on coarse crystal marble. The aim is to gain deep insight into the influence of strain rate on characteristic stresses, deformation properties and conversion of strain energy of such rock. It is found that the strain rate of 5 × 10-3 s-1 is the threshold to delineate the failure modes the tested coarse marble behaves in. At a strain rate less than this threshold, single-plane shear and conjugate X-shaped shear are the main failure modes, while beyond this threshold, extensile and splitting failures are dominant. The stress for crack initiation, the critical stress for dilation, the peak stress, and Young's modulus are all found to increase with strain rate, with an exception that the above stresses and modulus appear relatively low compared to the strain rate in the range of between 1 × 10-4 and 5 × 10-3 s-1. The pre-peak absorbed strain energy, damage strain energy and elastic strain energy are found to increase with strain rate. In addition, the elastic strain energy stored before peak point favors brittle failure of the specimen, as the more stored elastic energy in the specimen, the stronger the fragmenting.

  9. Conduction band structure and electron mobility in uniaxially strained Si via externally applied strain in nanomembranes

    NASA Astrophysics Data System (ADS)

    Chen, Feng; Euaruksakul, Chanan; Liu, Zheng; Himpsel, F. J.; Liu, Feng; Lagally, Max G.

    2011-08-01

    Strain changes the band structure of semiconductors. We use x-ray absorption spectroscopy to study the change in the density of conduction band (CB) states when silicon is uniaxially strained along the [1 0 0] and [1 1 0] directions. High stress can be applied to silicon nanomembranes, because their thinness allows high levels of strain without fracture. Strain-induced changes in both the sixfold degenerate Δ valleys and the eightfold degenerate L valleys are determined quantitatively. The uniaxial deformation potentials of both Δ and L valleys are directly extracted using a strain tensor appropriate to the boundary conditions, i.e., confinement in the plane in the direction orthogonal to the straining direction, which correspond to those of strained CMOS in commercial applications. The experimentally determined deformation potentials match the theoretical predictions well. We predict electron mobility enhancement created by strain-induced CB modifications.

  10. A comparison of eastern North American seismic strain-rates to glacial rebound strain-rates

    NASA Technical Reports Server (NTRS)

    James, Thomas S.; Bent, Allison L.

    1994-01-01

    Glacial rebound strain-rates computed using a simple Laurentide glacial loading model are of the order of 10(exp -9) per year within the region of glaciation and extending several hundred kilometers beyond. The horizontal strain-rates receive approximately equal contributions from horizontal and vertical velocities, a consequence of the spherical geometry adopted for the Earth model. In the eastern United States and southeastern Canada the computed strain-rates are 1-3 orders of magnitude greater than an estimate of the average seismic strain-rate (Anderson, 1986) and approximately 1 order of magnitude greater than predicted erosional strain-rates. The predicted glacial rebound strain-rates are not, in general, oriented in such a way as to augment the observed state of deviatoric stress, possibly explaining why the seismic strain-rates are much smaller than the glacial rebound strain-rates. An exception to this may be seismically active regions in the St. Lawrence valley.

  11. The Stress-Strain Condition Estimation of Detail in Crack Tip by Integral Strain Gauges

    NASA Astrophysics Data System (ADS)

    Syzrantsev, V.; Syzrantseva, K.

    2016-04-01

    The paper considers the task of stress-strain condition calculation of experimental sample in fatigue crack tip on weld boundary at its cyclic deforming. For this task decision authors use the information obtained by original means of cyclic strains measurement: Integral Strain Gauges. The results of carried experimental researches are compared with data of stress-strain condition estimation of detail in crack tip calculated by Finish Element Method.

  12. General Strain Theory and Delinquency: Focusing on the Influences of Key Strain Characteristics on Delinquency

    ERIC Educational Resources Information Center

    Moon, Byongook; Blurton, David; McCluskey, John D.

    2008-01-01

    The study examines the effects of recent, older, and chronic strains and of perceived injustice of strain on delinquency, sampling 777 Korean youth. Seven key strains most likely leading to delinquency, some of which were often overlooked in previous research, were included, and these are family conflict, parental punishment, teachers' punishment,…

  13. Silicon stress/strain activities at JPL

    NASA Technical Reports Server (NTRS)

    Chen, C. P.

    1986-01-01

    In-house Jet Propulsion Laboratory (JPL) work is described for silicon stress/strain, including the study of fracture mechanics, and on the high-temperature test program in which the low-strain response of silicon sheet materials above 1000 C is being measured and high temperature material property data are being determined.

  14. Nanocomposite Strain Gauges Having Small TCRs

    NASA Technical Reports Server (NTRS)

    Gregory, Otto; Chen, Ximing

    2009-01-01

    Ceramic strain gauges in which the strain-sensitive electrically conductive strips made from nanocomposites of noble metal and indium tin oxide (ITO) are being developed for use in gas turbine engines and other power-generation systems in which gas temperatures can exceed 1,500 F (about 816 C). In general, strain gauges exhibit spurious thermally induced components of response denoted apparent strain. When temperature varies, a strain-gauge material that has a nonzero temperature coefficient of resistance (TCR) exhibits an undesired change in electrical resistance that can be mistaken for the change in resistance caused by a change in strain. It would be desirable to formulate straingauge materials having TCRs as small as possible so as to minimize apparent strain. Most metals exhibit positive TCRs, while most semiconductors, including ITO, exhibit negative TCRs. The present development is based on the idea of using the negative TCR of ITO to counter the positive TCRs of noble metals and of obtaining the benefit of the ability of both ITO and noble metals to endure high temperatures. The noble metal used in this development thus far has been platinum. Combinatorial libraries of many ceramic strain gauges containing nanocomposites of various proportions of ITO and platinum were fabricated by reactive co-sputtering from ITO and platinum targets onto alumina- and zirconia-based substrates mounted at various positions between the targets.

  15. Fiscal Strain in an Era of Retrenchment.

    ERIC Educational Resources Information Center

    Hentschke, Guilbert; Yagielski, John

    Preliminary results of a three-year study of fifteen school districts indicate that fiscal strain results from both "intended" and "unintended" factors. The authors construct a model of fiscal strain that combines budget constraints with school district decision-makers' preference functions and indifference curves. Using this model and 1976 and…

  16. High-Temperature Resistance Strain Gauges

    NASA Technical Reports Server (NTRS)

    Lei, Jih-Fen

    1994-01-01

    Resistance strain gauges developed for use at high temperatures in demanding applications like testing aircraft engines and structures. Measures static strains at temperatures up to 800 degrees C. Small and highly reproducible. Readings corrected for temperature within small tolerances, provided temperatures measured simultaneously by thermocouples or other suitable devices. Connected in wheatstone bridge.

  17. Marital Role Strain and Sexual Satisfaction.

    ERIC Educational Resources Information Center

    Frank, Ellen; And Others

    1979-01-01

    Responses to a questionnaire pertaining to discrepancies between an individual's ideal and actual marital role behaviors and level of sexual satisfaction indicated lower levels of role strain in nonpatient couples. A higher level of role strain correlated with increased sexual dissatisfaction. (Author)

  18. Genome Annotation of Five Mycoplasma canis Strains

    PubMed Central

    May, M.; Michaels, D. L.; Barbet, A. F.

    2012-01-01

    To understand its potential to cause invasive disease, the genome of Mycoplasma canis strain PG14T from a dog's throat was compared to those of isolates from the genital tract or brain of dogs. The average nucleotide identity between strain pairs is 98%, and their genome annotations are similar. PMID:22815452

  19. Surfactin production by strains of Bacillus mojavensis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Bacillus mojavensis, RRC101 is an endophytic bacterium patented for control of fungal diseases in maize and other plants. DNA fingerprint analysis of the rep-PCR fragments of 35 B. mojavensis and 4 B. subtilis strains using the Diversilab genotyping system revealed genotypic distinctive strains alon...

  20. Medically Complex Home Care and Caregiver Strain

    ERIC Educational Resources Information Center

    Moorman, Sara M.; Macdonald, Cameron

    2013-01-01

    Purpose of the study: To examine (a) whether the content of caregiving tasks (i.e., nursing vs. personal care) contributes to variation in caregivers' strain and (b) whether the level of complexity of nursing tasks contributes to variation in strain among caregivers providing help with such tasks. Design and methods: The data came from the Cash…

  1. High strain rate behavior of polyurea compositions

    NASA Astrophysics Data System (ADS)

    Joshi, Vasant S.; Milby, Christopher

    2012-03-01

    High-strain-rate response of three polyurea compositions with varying molecular weights has been investigated using a Split Hopkinson Pressure Bar arrangement equipped with aluminum bars. Three polyurea compositions were synthesized from polyamines (Versalink, Air Products) with a multi-functional isocyanate (Isonate 143L, Dow Chemical). Amines with molecular weights of 1000, 650, and a blend of 250/1000 have been used in the current investigation. These materials have been tested to strain rates of over 6000/s. High strain rate results from these tests have shown varying trends as a function of increasing strain. While higher molecular weight composition show lower yield, they do not show dominant hardening behavior at lower strain. On the other hand, the blend of 250/1000 show higher load bearing capability but lower strain hardening effects than the 600 and 1000 molecular weight amine based materials. Results indicate that the initial increase in the modulus of the blend of 250/1000 may lead to the loss of strain hardening characteristics as the material is compressed to 50% strain, compared to 1000 molecular weight amine based material.

  2. Whole genome sequences of four Brucella strains.

    PubMed

    Ding, Jiabo; Pan, Yuanlong; Jiang, Hai; Cheng, Junsheng; Liu, Taotao; Qin, Nan; Yang, Yi; Cui, Buyun; Chen, Chen; Liu, Cuihua; Mao, Kairong; Zhu, Baoli

    2011-07-01

    Brucella melitensis and Brucella suis are intracellular pathogens of livestock and humans. Here we report four genome sequences, those of the virulent strain B. melitensis M28-12 and vaccine strains B. melitensis M5 and M111 and B. suis S2, which show different virulences and pathogenicities, which will help to design a more effective brucellosis vaccine. PMID:21602346

  3. Strain engineering in graphene by laser irradiation

    SciTech Connect

    Papasimakis, N.; Mailis, S.; Huang, C. C.; Al-Saab, F.; Hewak, D. W.; Luo, Z.; Shen, Z. X.

    2015-02-09

    We demonstrate that the Raman spectrum of graphene on lithium niobate can be controlled locally by continuous exposure to laser irradiation. We interpret our results in terms of changes to doping and mechanical strain and show that our observations are consistent with light-induced gradual strain relaxation in the graphene layer.

  4. Differentiation of Lactobacillus strains by ribotyping.

    PubMed Central

    Rodtong, S; Tannock, G W

    1993-01-01

    Fifty-four lactobacillus strains were differentiated by ribotyping. The stability of ribotypes characteristic of four strains of lactobacilli inhabiting the digestive tract of mice was investigated. One of four isolates of Lactobacillus delbrueckii GT21, which had been associated with mice for 22 months, had an altered ribotype. Images PMID:7504432

  5. Bicrystals with strain gradient effects

    SciTech Connect

    Shu, J.Y.

    1997-01-09

    Boundary between two perfectly bonded single crystals plays an important role in determining the deformation of the bicrystals. This work addresses the role of the grain boundary by considering the elevated hardening of a slip system due to a slip gradient. The slip gradients are associated with geometrically necessary dislocations and their effects become pronounced when a representative length scale of the deformation field is comparable to the dominant microstructural length scale of a material. A new rate-dependent crystal plasticity theory is presented and has been implemented within the finite element method framework. A planar bicrystal under uniform in-plane loading is studied using the new crystal theory. The strain is found to be continuous but nonuniform within a boundary layer around the interface. The lattice rotation is also nonuniform within the boundary layer. The width of the layer is determined by the misorientation of the grains, the hardening of slip systems, and most importantly by the characteristic material length scales. The overall yield strength of the bicrystal is also obtained. A significant grain-size dependence of the yield strength, the Hall- Petch effect is predicted.

  6. New naphthalene-degrading marine Pseudomonas strains.

    PubMed Central

    García-Valdés, E; Cozar, E; Rotger, R; Lalucat, J; Ursing, J

    1988-01-01

    Over 100 strains that utilized naphthalene as the only carbon and energy source were isolated from samples of marine sediments taken from a heavily polluted area. The isolates were characterized taxonomically and physiologically. Most of these strains belonged to the genus Pseudomonas, and seven of them did not fit any previous taxonomic description. They differed from type strains in a few biochemical characteristics and in the utilization of aromatic compounds. None had catechol 1,2-dioxygenase activity, and catechol 2,3-dioxygenase was responsible for the aromatic ring cleavage. DNA hybridization demonstrated a close relationship between two isolates and the Pseudomonas stutzeri type strain, and between five isolates and the Pseudomonas testosteroni type strain. On the basis of nutritional and enzymatic characteristics, it was assumed that the seven isolates represent new biovars belonging to the species P. testosteroni and P. stutzeri that are able to degrade aromatic hydrocarbons. Images PMID:3202629

  7. New naphthalene-degrading marine Pseudomonas strains

    SciTech Connect

    Garcia-Valdes, E.; Cozar, E.; Rotger, R. Lalucat, J. ); Ursing, J. )

    1988-10-01

    Over 100 strains that utilized naphthalene as the only carbon and energy source were isolated from samples of marine sediments taken from a heavily polluted area. The isolates were characterized taxonomically and physiologically. Most of these strains belonged to the genus Pseudomonas, and seven of them did not fit any previous taxonomic description. They differed from type strains in a few biochemical characteristics and in the utilization of aromatic compounds. None had catechol 1,2-dioxygenase activity, and catechol 2,3-dioxygenase was responsible for the aromatic ring cleavage. DNA hybridizations demonstrated a close relationship between two isolates and the Pseudomonas stutzeri type strain, and between five isolates and the Pseudomonas testosteroni type strain. On the basis of nutritional and enzymatic characteristics, it was assumed that the seven isolates represent new biovars belonging to the species P. testosteroni and P. stutzeri that are able to degrade aromatic hydrocarbons.

  8. Nanoscale strain mapping in battery nanostructures

    SciTech Connect

    Ulvestad, A. Kim, J. W.; Dietze, S. H.; Shpyrko, O. G.; Cho, H. M.; Meng, Y. S.; Harder, R.; Fohtung, E.

    2014-02-17

    Coherent x-ray diffraction imaging is used to map the local three dimensional strain inhomogeneity and electron density distribution of two individual LiNi{sub 0.5}Mn{sub 1.5}O{sub 4−δ} cathode nanoparticles in both ex-situ and in-situ environments. Our reconstructed images revealed a maximum strain of 0.4%. We observed different variations in strain inhomogeneity due to multiple competing effects. The compressive/tensile component of the strain is connected to the local lithium content and, on the surface, interpreted in terms of a local Jahn-Teller distortion of Mn{sup 3+}. Finally, the measured strain distributions are discussed in terms of their impact on competing theoretical models of the lithiation process.

  9. Mechanical strain effects on black phosphorus nanoresonators.

    PubMed

    Wang, Cui-Xia; Zhang, Chao; Jiang, Jin-Wu; Park, Harold S; Rabczuk, Timon

    2016-01-14

    We perform classical molecular dynamics simulations to investigate the effects of mechanical strain on single-layer black phosphorus nanoresonators at different temperatures. We find that the resonant frequency is highly anisotropic in black phosphorus due to its intrinsic puckered configuration, and that the quality factor in the armchair direction is higher than in the zigzag direction at room temperature. The quality factors are also found to be intrinsically larger than those in graphene and MoS2 nanoresonators. The quality factors can be increased by more than a factor of two by applying tensile strain, with uniaxial strain in the armchair direction being the most effective. However, there is an upper bound for the quality factor increase due to nonlinear effects at large strains, after which the quality factor decreases. The tension induced nonlinear effect is stronger along the zigzag direction, resulting in a smaller maximum strain for quality factor enhancement. PMID:26649476

  10. Human prion strain selection in transgenic mice

    PubMed Central

    Giles, Kurt; Glidden, David V.; Patel, Smita; Korth, Carsten; Groth, Darlene; Lemus, Azucena; DeArmond, Stephen J.; Prusiner, Stanley B.

    2010-01-01

    Transgenic (Tg) mice expressing chimeras of mouse and human prion proteins (PrP) have shorter incubation periods for Creutzfeldt-Jakob disease (CJD) prions than mice expressing full-length human PrP. Increasing the sequence similarity of the chimeric PrP to mouse PrP, by reverting human residues to mouse, resulted in a Tg line, denoted Tg22372, which was susceptible to sporadic (s) CJD prions in ~110 days 1. Reversion of one additional residue (M111V) resulted in a new Tg line, termed Tg1014, susceptible to sCJD prions in ~75 days. Tg1014 mice also has shorter incubation periods for variant (v) CJD prions, providing a more tractable model for studying this prion strain. Transmission of vCJD prions to Tg1014 mice resulted in two different strains, determined by neuropathology and biochemical analysis, which correlated with the length of the incubation time. One strain had the biochemical, neuropathological, and transmission characteristics including longer incubation times of the inoculated vCJD strain; the second strain produced a phenotype resembling that of sCJD prions including relatively shorter incubation periods. Mice with intermediate incubation periods for vCJD prions had a mixture of the two strains. Both strains were serially transmitted in Tg1014 mice, which led to further reduction in incubation periods. Conversion of vCJD-like to sCJD-like strains was favored in Tg1014 mice more than in the Tg22372 line. The single amino acid difference therefore appears to offer selective pressure for propagation of the sCJD-like strain. These two Tg mouse lines provide relatively rapid models to study human prion diseases as well as the evolution of human prion strains. PMID:20695008

  11. Micro-scale strain mapping technique: a tool to quantify strain partitioning during creep deformation

    NASA Astrophysics Data System (ADS)

    Quintanilla-Terminel, Alejandra; Zimmerman, Mark; Evans, Brian; Kohlstedt, David

    2016-04-01

    Several deformation mechanisms interact to accommodate plastic deformation. Quantifying the contribution of each to the total strain is necessary for establishing a better link between observed microstructures and mechanical data, as well as to allow more confident extrapolation from laboratory to natural conditions. In this contribution, we present the experimental and computational technique involved in micro-scale strain mapping (MSSM). The MSSM technique relies on analyzing the relative displacement of initially regularly spaced markers after deformation. We present several microfabrication techniques that permit us to pattern various rocks with micrometric and nanometric metal markers, as well as the challenges faced in working at high temperatures and pressures. A Hough transform algorithm was used to detect the markers and automate as much as possible the strain analysis. The von Mises strain is calculated for a set of n-points and their relative displacements, which allow us to map the strain at different length scales. We applied the MSSM technique to study strain partitioning during deformation creep of Carrara marble and San Carlos olivine at a confining pressure, Pc, of 300 MPa and homologous temperatures of 0.3 to 0.6. We measured the local strain and strain heterogeneity produced during creep deformation of split cylinders of Carrara marble under conventional triaxial loading to inelastic strains of 11 to 36% at a strain rate of 3x10‑5s‑1, Pc = 300 MPa and 400o < T <700oC. We conclude that the evolution of deformation structures in marble takes place over a substantial interval in strain and that the duration of this interval depends on strain rate, temperature, and pressure. Our first results on strain mapping of olivine deformed at T = 1150oC and Pc = 300 MPa demonstrate promise for characterizing intragranular strain and better defining the contribution of grain boundary sliding to the total strain.

  12. Nonlinear stress-strain behavior of carbon nanotube fibers subject to slow sustained strain rate

    NASA Astrophysics Data System (ADS)

    Sun, Gengzhi; Wang, Dong; Pang, John H. L.; Liu, Jun; Zheng, Lianxi

    2013-09-01

    Nonlinear stress-strain behavior of carbon nanotube (CNT) fibers is studied based on the test data where fiber strength can be modeled by the Weibull distribution. CNT fibers spun from vertically aligned arrays are tensioned at slow sustained strain rate (0.00001 1/s) to study the tensile strength resulting from sliding-to-failure effects. A model is developed to estimate the Weibull modulus which characterizes the dispersion of fiber strengths in terms of the maximum sustained stress and failure strain of the fibers. The results show that the sliding indeed has great influence on the stress-strain relation of CNT fibers at low strain rate.

  13. Strain relaxation in buried strained layers by mixture of single and dipolar dislocation arrays

    NASA Astrophysics Data System (ADS)

    Jin, Z.; Yang, S.; Ma, C.; Liu, S.

    1999-06-01

    The strain relaxation in buried strained layers is investigated using an elastic continuum model. The mixture of single dislocations residing at the substrate/strained layer interface (lower interface) and dipolar dislocations in which one is at the lower interface and the other at the strained layer/capping layer interface (upper interface), is proposed. In the mixture, the dislocation distributions are denoted by a parameter which is the ratio of the density of misfit dislocations at the upper interface to that at the lower interface. In a buried strained layer, relaxation of mean strain occurs by introduction of two orthogonal arrays of mixture of single and dipolar dislocations. Considering both the free surface and interactions between dislocations, the total elastic energy per unit area of buried strained layer containing two orthogonal arrays of mixture of single and dipolar dislocations is calculated. The energy is dependent on the misfit dislocation distributions. On energy minimization considerations, the expression of the misfit dislocation distributions in a buried strained layer with arbitrary strain relaxation and capping layer thickness is derived. It is demonstrated that the strain is initially relaxed by the single misfit dislocations and relaxed by the mixture of single and dipolar misfit dislocations in the final stage of strain relaxation in many buried layers of practical interest.

  14. In vitro strain measurement in the porcine antrum using ultrasound doppler strain rate imaging.

    PubMed

    Ahmed, Aymen Bushra; Gilja, Odd Helge; Gregersen, Hans; Ødegaard, Svein; Matre, Knut

    2006-04-01

    Strain rate imaging (SRI) enables study of deformation in soft tissues. The aim of this study was to evaluate the accuracy of SRI in measuring strain in the porcine antral wall in vitro. An experimental set-up enabled controlled distension of a porcine stomach in a saline reservoir. Radial strain obtained by SRI was compared with radial strain calculated from B-mode ultrasonography. Circumferential strain obtained by SRI was compared with circumferential strain calculated from sonomicrometry. The agreement between radial strain values measured by SRI and B-mode, along and across several ultrasound (US) beams, using US frequency 6.7 MHz and strain length (SL) = 1.9 mm was = -1.0 +/- 12.1% and 0.5 +/- 13.4%, respectively (mean difference +/- 2SD%) and it was better than with SL 1.2 mm. Compared with sonomicrometry, SRI-determined circumferential strain using 6.7 MHz and SL = 1.9 mm was less accurate, whether averaging along or across several US beams (-9.2 +/- 46.7% and 13.8 +/- 51.2%, respectively). In conclusion, SRI gave accurate measurement of radial strain of the antral wall, but seemed to be less accurate for measurement of circumferential strain for this in vitro set-up. PMID:16616598

  15. Amerindian Helicobacter pylori Strains Go Extinct, as European Strains Expand Their Host Range

    PubMed Central

    Domínguez-Bello, Maria G.; Pérez, Maria E.; Bortolini, Maria C.; Salzano, Francisco M.; Pericchi, Luis R.; Zambrano-Guzmán, Orlisbeth; Linz, Bodo

    2008-01-01

    We studied the diversity of bacteria and host in the H. pylori-human model. The human indigenous bacterium H. pylori diverged along with humans, into African, European, Asian and Amerindian groups. Of these, Amerindians have the least genetic diversity. Since niche diversity widens the sets of resources for colonizing species, we predicted that the Amerindian H. pylori strains would be the least diverse. We analyzed the multilocus sequence (7 housekeeping genes) of 131 strains: 19 cultured from Africans, 36 from Spanish, 11 from Koreans, 43 from Amerindians and 22 from South American Mestizos. We found that all strains that had been cultured from Africans were African strains (hpAfrica1), all from Spanish were European (hpEurope) and all from Koreans were hspEAsia but that Amerindians and Mestizos carried mixed strains: hspAmerind and hpEurope strains had been cultured from Amerindians and hpEurope and hpAfrica1 were cultured from Mestizos. The least genetically diverse H. pylori strains were hspAmerind. Strains hpEurope were the most diverse and showed remarkable multilocus sequence mosaicism (indicating recombination). The lower genetic structure in hpEurope strains is consistent with colonization of a diversity of hosts. If diversity is important for the success of H. pylori, then the low diversity of Amerindian strains might be linked to their apparent tendency to disappear. This suggests that Amerindian strains may lack the needed diversity to survive the diversity brought by non-Amerindian hosts. PMID:18830403

  16. Fabrication and device characteristics of strained-Si-on-insulator (strained-SOI) CMOS

    NASA Astrophysics Data System (ADS)

    Takagi, Shin-ichi; Mizuno, Tomohisa; Tezuka, Tsutomu; Sugiyama, Naoharu; Numata, Toshinori; Usuda, Koji; Moriyama, Yoshihiko; Nakaharai, Shu; Koga, Junji; Tanabe, Akihito; Maeda, Tatsuro

    2004-03-01

    Strained-Si-on-insulator (strained-SOI) CMOS is a promising device structure for satisfying requirements of both high current drive and low supply voltage under sub-100 nm nodes, because of the combination of advantages of SOI MOSFETs and high mobility strained-Si channels. In this paper, we present the concept, the device structures and the fabrication techniques of strained-SOI CMOS. We introduce our original fabrication method of strained-SOI substrates, called the Ge condensation technique. It is experimentally shown that strained-SOI CMOS has higher electron and hole mobility and that strained-SOI CMOS ring oscillators successfully operate with the performance enhancement of 30-70% against conventional SOI CMOS ones.

  17. Highly Invasive Listeria monocytogenes Strains Have Growth and Invasion Advantages in Strain Competition

    PubMed Central

    Manthou, Evanthia; Ciolacu, Luminita; Wagner, Martin; Skandamis, Panagiotis N.

    2015-01-01

    Multiple Listeria monocytogenes strains can be present in the same food sample; moreover, infection with more than one L. monocytogenes strain can also occur. In this study we investigated the impact of strain competition on the growth and in vitro virulence potential of L. monocytogenes. We identified two strong competitor strains, whose growth was not (or only slightly) influenced by the presence of other strains and two weak competitor strains, which were outcompeted by other strains. Cell contact was essential for growth inhibition. In vitro virulence assays using human intestinal epithelial Caco2 cells showed a correlation between the invasion efficiency and growth inhibition: the strong growth competitor strains showed high invasiveness. Moreover, invasion efficiency of the highly invasive strain was further increased in certain combinations by the presence of a low invasive strain. In all tested combinations, the less invasive strain was outcompeted by the higher invasive strain. Studying the effect of cell contact on in vitro virulence competition revealed a complex pattern in which the observed effects depended only partially on cell-contact suggesting that competition occurs at two different levels: i) during co-cultivation prior to infection, which might influence the expression of virulence factors, and ii) during infection, when bacterial cells compete for the host cell. In conclusion, we show that growth of L. monocytogenes can be inhibited by strains of the same species leading potentially to biased recovery during enrichment procedures. Furthermore, the presence of more than one L. monocytogenes strain in food can lead to increased infection rates due to synergistic effects on the virulence potential. PMID:26529510

  18. Volume strain within The Geysers geothermal field

    NASA Astrophysics Data System (ADS)

    Mossop, Antony; Segall, Paul

    1999-12-01

    During the 1970s and 1980s, The Geysers geothermal region was rapidly developed as a site of geothermal power production. The likelihood that this could cause significant strain within the reservoir, with corresponding surface displacements, led to a series of deformation monitoring surveys. In 1973, 1975, 1977, and 1980, The Geysers region was surveyed using first-order, class I, spirit leveling. In 1994, 1995, and 1996, many of the leveling control monuments were resurveyed using high-precision Global Positioning System receivers. The two survey methods are reconciled using the GEOID96 geoid model. The displacements are inverted to determine volume strain within the reservoir. For the period 1980-1994, peak volume strains in excess of 5×10-4 are imaged. There is an excellent correlation between the observed changes in reservoir steam pressures and the imaged volume strain. If reservoir pressure changes are inducing volume strain, then the reservoir quasi-static bulk modulus K must be <4.6×109 Pa. However, seismic velocities indicate a much suffer reservoir with K = 3.4 × 1010 Pa. This apparent discrepancy is shown to be consistent with predicted frequency dependence in K for fractured and water-saturated rock. Inversion of surface deformation data therefore appears to be a powerful method for imaging pressure change within the body of the reservoir. Correlation between induced seismicity at The Geysers and volume strain is observed. However, earthquake distribution does not appear to have a simple relationship with volume strain rate.

  19. Strain engineering of graphene: a review.

    PubMed

    Si, Chen; Sun, Zhimei; Liu, Feng

    2016-02-14

    Graphene has intrigued the science community by many unique properties not found in conventional materials. In particular, it is the strongest two-dimensional material ever measured, being able to sustain reversible tensile elastic strain larger than 20%, which yields an interesting possibility to tune the properties of graphene by strain and thus opens a new field called "straintronics". In this article, the current progress in the strain engineering of graphene is reviewed. We first summarize the strain effects on the electronic structure and Raman spectra of graphene. We then highlight the electron-phonon coupling greatly enhanced by the biaxial strain and the strong pseudomagnetic field induced by the non-uniform strain with specific distribution. Finally, the potential application of strain-engineering in the self-assembly of foreign atoms on the graphene surface is also discussed. Given the short history of graphene straintronics research, the current progress has been notable, and many further advances in this field are expected. PMID:26796960

  20. Strain mapping analysis of textile composites

    NASA Astrophysics Data System (ADS)

    Ivanov, Dmitry; Ivanov, Sergey; Lomov, Stepan; Verpoest, Ignaas

    2009-03-01

    The focus of the work is meso-scale analysis (scale level of the fabric unit cell) of textile composite deformation and failure. The surface strain measurement is used for: (1) experimental investigation, which includes study of strain distribution at various stages of deformation, plasticity detection, damage initiation; (2) numerical validation of the correspondent finite element (FE) models. Two examples are considered: carbon-epoxy triaxial-braided and glass polypropylene-woven composite. The surface strain measurement (by digital image correlation technique) accompanies the tensile tests, aiming at: (1) elastic anisotropic constants characterisation, (2) study of non-linear material behaviour (for the thermoplastic composite), (3) control of homogeneity of the macro-strain distribution, and (4) analysis of damage initiation in brittle composites. Validation of meso-FE models by strain measurements encounters difficulties arising from (1) resolution of the strain measurements, (2) irregularities of the initial structure such as random layer nesting, ply interaction, and deviation of yarns from their theoretical position, which affects the measured strain fields. The paper discusses these difficulties and demonstrates a qualitative agreement with the FE analysis of idealised composite configurations.

  1. Biological characterization of Trypanosoma cruzi strains.

    PubMed

    Martínez-Díaz, R A; Escario, J A; Nogal-Ruiz, J J; Gómez-Barrio, A

    2001-01-01

    Biological parameters of five Trypanosoma cruzi strains from different sources were determined in order to know the laboratory behaviour of natural populations. The parameters evaluated were growth kinetics of epimastigotes, differentiation into metacyclic forms, infectivity in mammalian cells grown in vitro and parasite susceptibility to nifurtimox, benznidazole and gentian violet. Differences in transformation to metacyclic, in the percentage of infected cells as well as in the number of amastigotes per cell were observed among the strains. Regarding to pharmacological assays, Y strain was the most sensitive to the three assayed compounds. These data demonstrate the heterogeneity of natural populations of T. cruzi, the only responsible of infection in humans. PMID:11285475

  2. Electrical measurements as stress-strain monitors

    USGS Publications Warehouse

    Madden, T. R.

    1979-01-01

    Many of the measurements of phyiscal properties being made in earthquake prediction studies are based on the premise that these properties are influenced by stresses and strains, especially so near the failure point. Electrical properties of rocks are controlled by the fluid in the pores and cracks in the rocks. Because these regions are most influenced by stresses, one should expect electrical measurements to be sensitive measures of changing stresses and strains. Nevertheless, the strain changes we are dealing with are very small, and, consequently, we need very sensitive instruments to detect them.  

  3. Dark field electron holography for strain measurement.

    PubMed

    Béché, A; Rouvière, J L; Barnes, J P; Cooper, D

    2011-02-01

    Dark field electron holography is a new TEM-based technique for measuring strain with nanometer scale resolution. Here we present the procedure to align a transmission electron microscope and obtain dark field holograms as well as the theoretical background necessary to reconstruct strain maps from holograms. A series of experimental parameters such as biprism voltage, sample thickness, exposure time, tilt angle and choice of diffracted beam are then investigated on a silicon-germanium layer epitaxially embedded in a silicon matrix in order to obtain optimal dark field holograms over a large field of view with good spatial resolution and strain sensitivity. PMID:21333860

  4. Strain Determination Using Electron Backscatter Diffraction

    SciTech Connect

    Krause, M.; Graff, A.; Altmann, F.

    2010-11-24

    In the present paper we demonstrate the use of electron backscatter diffraction (EBSD) for high resolution elastic strain determination. Here, we focus on analysis methods based on determination of small shifts in EBSD pattern with respect to a reference pattern using cross-correlation algorithms. Additionally we highlight the excellent spatial and depth resolution of EBSD and introduce the use of simulated diffraction patterns based on dynamical diffraction theory for sensitivity estimation. Moreover the potential of EBSD for strain analysis of strained thin films with particular emphasis on appropriate target preparation which respect to occurring lattice defects is demonstrated.

  5. Transport in Strained Graphene at Low Temperatures

    NASA Astrophysics Data System (ADS)

    Aguilera-Servin, Juan; Nosek, Adrian; Pan, Cheng; Bockrath, Marc

    2015-03-01

    Strain in graphene layers produces synthetic gauge fields that may be used to modify the properties of its electron system. We study single layers of graphene transferred over Ti/Au electrical contacts on oxidized Si wafers with etched triangular holes in the oxide. The layers are strained by applying pressure electrostatically using a gate voltage and hydrostatically using an external inert gas. We investigate electronic transport in this suspended variable-strain graphene system at low temperatures. We will discuss our latest results.

  6. Strain gage balances and buffet gages

    NASA Technical Reports Server (NTRS)

    Ferris, A. T.

    1983-01-01

    One-piece strain gage force balances were developed for use in the National Transonic Facility (NTF). This was accomplished by studying the effects of the cryogenic environment on materials, strain gages, cements, solders, and moisture proofing agents, and selecting those that minimized strain gage output changes due to temperature. In addition, because of the higher loads that may be imposed by the NTF, these balances are designed to carry a larger load for a given diameter than conventional balances. Full cryogenic calibrations were accomplished, and wind tunnel results that were obtained from the Langley 0-3-Meter Transonic Cryogenic Tunnel were used to verify laboratory test results.

  7. Microstructural Analysis of Welding: Deformation and Strain

    NASA Astrophysics Data System (ADS)

    Quane, S. L.; Russell, K.

    2003-12-01

    Welding in pyroclastic deposits involves the sintering, compaction and flattening of hot glassy particles and is attended by systematic changes in physical properties. Welded materials contain implicit information regarding the total accumulated strain as well as the mechanisms of deformation. Here, we use detailed microstructural analysis of synthetic and natural welded materials to make quantitative estimates of strain and constrain the rheology of these materials during the welding process. Part one of our study comprises microstructural analysis of end products from unconfined high temperature deformation experiments on sintered cores of soda-lime silica glass spheres. This analogue material has relatively simple and well-characterized starting properties. Furthermore, the initially spherical shapes of particles provide excellent strain markers. Experiments were run at a variety of temperatures, strain rates and stresses resulting in end products with varying degrees of total strain. The nature of strain partitioning and accumulation are evaluated using image analysis techniques on scanned images and photomicrographs of thin sections cut perpendicular to the loading direction of each experimental product. Shapes of the individual deformed particles (e.g., oblate spheroids) were determined and the Scion image analysis program was used to create a best-fit ellipse for each particle. Statistics collected on each particle include: axial dimension (a), vertical dimension (c) and angle from the horizontal. The data are used to calculate the oblateness of each particle (1-c/a) and the angle of deformation induced foliation. Furthermore, the relative proportions of visible blue epoxy in the sample scans determine bulk porosity. The average oblateness of the particles is a direct, independent measure of the accumulated strain in each sample. Results indicate that these measured values are equal to calculated theoretical values of oblateness for spheroids undergoing the

  8. Freeze-drying Various Strains of Shigella

    PubMed Central

    Berman, Sanford; Altieri, Patricia L.; Groffinger, Albert; Lowenthal, Joseph P.; Formal, Samuel B.

    1968-01-01

    Of six candidate strains of Shigella prepared in Brain Heart Infusion broth as freeze-dried vaccine, low survival rates were obtained with two of the most promising strains. Survival rates with these two strains were increased to acceptable levels when the organisms were suspended in a medium consisting of 8.2% sucrose, 0.01 M phosphate, 0.07% monosodium glutamate, and 2.5% human serum albumin. Alteration of the freezing temperature did not improve the recovery rates significantly. PMID:5726151

  9. A study of the effect of apparent strain on thermal stress measurement for two types of elevated temperature strain gages

    NASA Technical Reports Server (NTRS)

    Jenkins, J. M.

    1983-01-01

    A weldable type strain gage was used to measure low level thermal stress in an elevated temperature environment. Foil strain gages used in a comparative manner reveal that the apparent strain of weldable strain gages is not sufficiently known to acquire accurate low level thermal stress data. Apparent strain data acquired from coupon tests reveals a large scatter in apparent strain characteristics among the weldable strain gages. It is concluded that apparent strain data for individual weldable strain gages must be required prior to installation if valid thermal stress data is to be obtained through the temperature range of room temperature to 755 K (900 F).

  10. 40 CFR 180.1209 - Bacillus subtilis strain QST 713 and strain QST 713 variant soil; exemption from the requirement...

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... strain QST 713 variant soil; exemption from the requirement of a tolerance. 180.1209 Section 180.1209... strain QST 713 and strain QST 713 variant soil; exemption from the requirement of a tolerance. An... Bacillus subtilis strain QST 713 and strain QST 713 variant soil when used in or on all food commodities....

  11. 40 CFR 180.1209 - Bacillus subtilis strain QST 713 and strain QST 713 variant soil; exemption from the requirement...

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... strain QST 713 variant soil; exemption from the requirement of a tolerance. 180.1209 Section 180.1209... strain QST 713 and strain QST 713 variant soil; exemption from the requirement of a tolerance. An... Bacillus subtilis strain QST 713 and strain QST 713 variant soil when used in or on all food commodities....

  12. A new radial strain and strain rate estimation method using autocorrelation for carotid artery

    NASA Astrophysics Data System (ADS)

    Ye, Jihui; Kim, Hoonmin; Park, Jongho; Yeo, Sunmi; Shim, Hwan; Lim, Hyungjoon; Yoo, Yangmo

    2014-03-01

    Atherosclerosis is a leading cause of cardiovascular disease. The early diagnosis of atherosclerosis is of clinical interest since it can prevent any adverse effects of atherosclerotic vascular diseases. In this paper, a new carotid artery radial strain estimation method based on autocorrelation is presented. In the proposed method, the strain is first estimated by the autocorrelation of two complex signals from the consecutive frames. Then, the angular phase from autocorrelation is converted to strain and strain rate and they are analyzed over time. In addition, a 2D strain image over region of interest in a carotid artery can be displayed. To evaluate the feasibility of the proposed radial strain estimation method, radiofrequency (RF) data of 408 frames in the carotid artery of a volunteer were acquired by a commercial ultrasound system equipped with a research package (V10, Samsung Medison, Korea) by using a L5-13IS linear array transducer. From in vivo carotid artery data, the mean strain estimate was -0.1372 while its minimum and maximum values were -2.961 and 0.909, respectively. Moreover, the overall strain estimates are highly correlated with the reconstructed M-mode trace. Similar results were obtained from the estimation of the strain rate change over time. These results indicate that the proposed carotid artery radial strain estimation method is useful for assessing the arterial wall's stiffness noninvasively without increasing the computational complexity.

  13. Tropical Strains of Ralstonia solanacearum Outcompete Race 3 Biovar 2 Strains at Lowland Tropical Temperatures

    PubMed Central

    Huerta, Alejandra I.; Milling, Annett

    2015-01-01

    Bacterial wilt, caused by members of the heterogenous Ralstonia solanacearum species complex, is an economically important vascular disease affecting many crops. Human activity has widely disseminated R. solanacearum strains, increasing their global agricultural impact. However, tropical highland race 3 biovar 2 (R3bv2) strains do not cause disease in tropical lowlands, even though they are virulent at warm temperatures. We tested the hypothesis that differences in temperature adaptation and competitive fitness explain the uneven geographic distribution of R. solanacearum strains. Using three phylogenetically and ecologically distinct strains, we measured competitive fitness at two temperatures following paired-strain inoculations of their shared host, tomato. Lowland tropical strain GMI1000 was only weakly virulent on tomato under temperate conditions (24°C for day and 19°C for night [24/19°C]), but highland tropical R3bv2 strain UW551 and U.S. warm temperate strain K60 were highly virulent at both 24/19°C and 28°C. Strain K60 was significantly more competitive than both GMI1000 and UW551 in tomato rhizospheres and stems at 28°C, and GMI1000 also outcompeted UW551 at 28°C. The results were reversed at cooler temperatures, at which highland strain UW551 generally outcompeted GMI1000 and K60 in planta. The superior competitive index of UW551 at 24/19°C suggests that adaptation to cool temperatures could explain why only R3bv2 strains threaten highland agriculture. Strains K60 and GMI1000 each produced different bacteriocins that inhibited growth of UW551 in culture. Such interstrain inhibition could explain why R3bv2 strains do not cause disease in tropical lowlands. PMID:25769835

  14. Clostridium thermosaccharolyticum strain deficient in acetate production

    SciTech Connect

    Rothstein, D.M.

    1986-01-01

    A mutant of Clostridium thermosaccharolyticum that is blocked in acetate production was isolated after treatment with nitrosoguanidine and selection for fluoroacetate resistance. The mutant produced more ethanol than the parent strain did.

  15. High Strain Rate Rheology of Polymer Melts

    NASA Astrophysics Data System (ADS)

    Kelly, Adrian; Gough, Tim; Whiteside, Ben; Coates, Phil D.

    2009-07-01

    A modified servo electric injection moulding machine has been used in air-shot mode with capillary dies fitted at the nozzle to examine the rheology of a number of commercial polymers at wall shear strain rates of up to 107 s-1. Shear and extensional flow properties were obtained through the use of long and orifice (close to zero land length) dies of the same diameter. A range of polyethylene, polypropylene and polystyrene melts have been characterized; good agreement was found between the three techniques used in the ranges where strain rates overlapped. Shear viscosity of the polymers studied was found to exhibit a plateau above approximately 1×106 s-1. A relationship between the measured high strain rate rheological behaviour and molecular structure was noted, with polymers containing larger side groups reaching the rate independent plateau at lower strain rates than those with simpler structures.

  16. Strained Hydrocarbons as Potential Hypergolic Fuels

    NASA Technical Reports Server (NTRS)

    2005-01-01

    A storable combination of high-energy hypergolic fuel and oxidizer is advantageous to the future of reusable launch vehicles (RLVs). The combination will allow an increase in energy per unit volume of fuel and eliminate the need for an external ignition system. Strained systems have been studied as potential high-density fuels. Adding hypergolic functional groups, such as amino groups, to these hydrocarbons will potentially allow auto ignition of strained systems with hydrogen peroxide. Several straight chain amines and their strained counterparts containing an equivalent number of carbon atoms have been purchased and synthesized. These amines provide initial studies to determine the effects of fuel vapor pressure, strain energy, fuel miscibility, and amine substitution upon fuel ignition time and hypergolicity with hydrogen peroxide as an oxidizer.

  17. Strain accumulation along the Cascadia Subduction Zone

    NASA Astrophysics Data System (ADS)

    Murray, Mark H.; Lisowski, Michael

    2000-11-01

    We combine triangulation, trilateration, and GPS observations to determine horizontal strain rates along the Cascadia subduction zone from Cape Mendocino to the Strait of Juan de Fuca. Shear-strain rates are significantly greater than zero (95% confidence) in all forearc regions (26-167 nanoradians/yr), and are not significant in the arc and backarc regions. The deformation is primarily uniaxial contraction nearly parallel to Juan de Fuca-North America plate convergence (N55°-80°E). The strain rates are consistent with an elastic dislocation model for interseismic slip with a shallow 100-km wide locked zone and a deeper 75-km transition zone along the entire megathrust, except along the central Oregon coast where relatively lower strain rates are consistent with 30-40 km wide locked and transition zones.

  18. Tuning strain in flexible graphene nanoelectromechanical resonators

    NASA Astrophysics Data System (ADS)

    Guan, Fen; Kumaravadivel, Piranavan; Averin, Dmitri V.; Du, Xu

    2015-11-01

    The structural flexibility of low dimensional nanomaterials offers unique opportunities for studying the impact of strain on their physical properties and for developing innovative devices utilizing strain engineering. A key towards such goals is a device platform which allows the independent tuning and reliable calibration of the strain. Here, we report the fabrication and characterization of graphene nanoelectromechanical resonators (GNEMRs) on flexible substrates. Combining substrate bending and electrostatic gating, we achieve the independent tuning of the strain and sagging in graphene and explore the nonlinear dynamics over a wide parameter space. Analytical and numerical studies of a continuum mechanics model, including the competing higher order nonlinear terms, reveal a comprehensive nonlinear dynamics phase diagram, which quantitatively explains the complex behaviors of GNEMRs.

  19. Measuring strain distributions in amorphous materials

    NASA Astrophysics Data System (ADS)

    Poulsen, Henning F.; Wert, John A.; Neuefeind, Jörg; Honkimäki, Veijo; Daymond, Mark

    2005-01-01

    A number of properties of amorphous materials including fatigue, fracture and component performance are governed by the magnitude of strain fields around inhomogeneities such as inclusions, voids and cracks. At present, localized strain information is only available from surface probes such as optical or electron microscopy. This is unfortunate because surface and bulk characteristics in general differ. Hence, to a large extent, the assessment of strain distributions relies on untested models. Here we present a universal diffraction method for characterizing bulk stress and strain fields in amorphous materials and demonstrate its efficacy by work on a material of current interest in materials engineering: a bulk metallic glass. The macroscopic response is shown to be less stiff than the atomic next-neighbour bonds because of structural rearrangements at the scale of 4-10 Å. The method is also applicable to composites comprising an amorphous matrix and crystalline inclusions.

  20. Survival of Bacillus megaterium strains in water.

    PubMed

    Palmada, F M; Sanchez-Rivas, C

    1996-01-01

    Cultures of Bacillus megaterium strains, producers or not of poly-beta-hydroxy-butyrate (PHB+ and PHB-) were submitted to several shift-downs: nutritional (one hundred fold dilution in saline water S or artificial fresh water ADA) or nutritional and osmotic (one hundred fold dilution in water or W). In all conditions tested, the wild type strain survived, duplicated five times and sporulated. However, the PHB- mutant strain showed a drastic loss of viability in water (< 0.1%) not observed when the shift was only nutritional (S or ADA). Discussion was focused on the advantages of the potential use of Bacillus megaterium as host for delivering bio-insecticides in waters instead of natural hosts such as B. thuringiensis strains. PMID:9017852

  1. Method of transferring strained semiconductor structure

    DOEpatents

    Nastasi, Michael A.; Shao, Lin

    2009-12-29

    The transfer of strained semiconductor layers from one substrate to another substrate involves depositing a multilayer structure on a substrate having surface contaminants. An interface that includes the contaminants is formed in between the deposited layer and the substrate. Hydrogen atoms are introduced into the structure and allowed to diffuse to the interface. Afterward, the deposited multilayer structure is bonded to a second substrate and is separated away at the interface, which results in transferring a multilayer structure from one substrate to the other substrate. The multilayer structure includes at least one strained semiconductor layer and at least one strain-induced seed layer. The strain-induced seed layer can be optionally etched away after the layer transfer.

  2. Strain Gauges Mounted To Retain Calibration

    NASA Technical Reports Server (NTRS)

    Butler, Barry L.

    1993-01-01

    Silicon-based semiconductor strain gauges mounted in such way they retain original calibration for several years instead of few months. Improvement effected by bonding gauges to ceramic substrates with glasses instead of epoxies as adhesives.

  3. Thin film strain gage development program

    NASA Technical Reports Server (NTRS)

    Grant, H. P.; Przybyszewski, J. S.; Anderson, W. L.; Claing, R. G.

    1983-01-01

    Sputtered thin-film dynamic strain gages of 2 millimeter (0.08 in) gage length and 10 micrometer (0.0004 in) thickness were fabricated on turbojet engine blades and tested in a simulated compressor environment. Four designs were developed, two for service to 600 K (600 F) and two for service to 900 K (1200 F). The program included a detailed study of guidelines for formulating strain-gage alloys to achieve superior dynamic and static gage performance. The tests included gage factor, fatigue, temperature cycling, spin to 100,000 G, and erosion. Since the installations are 30 times thinner than conventional wire strain gage installations, and any alteration of the aerodynamic, thermal, or structural performance of the blade is correspondingly reduced, dynamic strain measurement accuracy higher than that attained with conventional gages is expected. The low profile and good adherence of the thin film elements is expected to result in improved durability over conventional gage elements in engine tests.

  4. Strain field of a buried oxide aperture

    NASA Astrophysics Data System (ADS)

    Kießling, F.; Niermann, T.; Lehmann, M.; Schulze, J.-H.; Strittmatter, A.; Schliwa, A.; Pohl, U. W.

    2015-02-01

    The strain field of an AlOx current aperture, fabricated by selective oxidation of an AlAs/GaAs layer buried in a circular GaAs mesa, is studied. Components of the strain tensor for a thin cross-section lamella cut out of such a structure are evaluated from dark-field electron holography, proving the validity of simulations based on linear elasticity. Simulation of the entire structure is utilized to prepare mesa surfaces with tailored strain fields for controlling the nucleation site of InGaAs quantum dots. The experimental proof of strain simulations allows estimating the magnitude of piezoelectricity, yielding for the studied mesa structures a piezoelectric potential up to 50 mV.

  5. Can a strain yield a qubit?

    NASA Astrophysics Data System (ADS)

    Benjamin, Colin

    2015-03-01

    A Josepshon qubit is designed via the application of a tensile strain to a topological insulator surface, sandwiched between two s-wave superconductors. The strain applied leads to a shift in Dirac point without changing the conducting states existing on the surface of a topological insulator. This strain applied can be tuned to form a π-junction in such a structure. Combining two such junctions in a ring architecture leads to the ground state of the ring being in a doubly degenerate state- ``0'' and ``1'' states of the qubit. A qubit designed this way is easily controlled via the tunable strain. We report on the conditions necessary to design such a qubit. Finally the operating time of a single qubit phase gate is derived. This work was supported by funds from Dept. of Science and Technology (Nanomission), Govt. of India, Grant No. SR/NM/NS-1101/2011.

  6. Design parameters for borehole strain instrumentation

    NASA Astrophysics Data System (ADS)

    Gladwin, Michael T.; Hart, Rhodes

    1985-01-01

    The response of a borehole strain meter to hydrostatic and shear deformations in an isotropic medium is calculated to facilitate optimum instrument design and produce instrument response factors for parameters typically encountered in installed instruments. Results for an empty borehole are first compared with results for an instrument in intimate contact with the surrounding rock. The effects of the grout used to install the instrument are then examined. Where possible, analytic forms for the response factors are given. Results for typical installations are then presented in graphical form for optimizing instrument design in an environment of known elastic parameters. Alternatively, the results may be applied in the measurement of unknown strain signals, to correct for instrument response or to provide in-situ estimates of the elastic properties of the environment by examination of observed strain response to known strain signals.

  7. Broken Bones, Sprains, and Strains (For Parents)

    MedlinePlus

    ... 5 Things to Know About Zika & Pregnancy Broken Bones, Sprains, and Strains KidsHealth > For Parents > Broken Bones, ... home. What to Do: For a Suspected Broken Bone: Do not move a child whose injury involves ...

  8. Dynamic Force Measurement with Strain Gauges

    ERIC Educational Resources Information Center

    Lee, Bruce E.

    1974-01-01

    Discusses the use of four strain gauges, a Wheatstone bridge, and an oscilloscope to measure forces dynamically. Included is an example of determining the centripetal force of a pendulum in a general physics laboratory. (CC)

  9. Silicon ribbon stress-strain activities

    NASA Technical Reports Server (NTRS)

    Wada, B. K.; Shih, C. F.; Kuo, C. P.; Phillips, W. M.

    1984-01-01

    The finite element method is used to investigate stress/strain in silicon ribbon. Failure considerations such as residual stress, buckling material non-linearity and creep are discussed. Temperature profiles are presented.

  10. [Improvement of Trichoderma strains for biocontrol].

    PubMed

    Benítez, T; Rey, M; Delgado-Jarana, J; Rincón, A M; Limón, M C

    2000-03-01

    The use of the fungal genus Trichoderma to control fungal plant diseases is a promising alternative to the use of chemical compounds. The aim of this work has been to obtain Trichoderma strains with improved capacity as biological control agents. To do so, the hydrolytic capacity on fungal cell walls of strains of the fungus Trichoderma harzianum has been increased. On one hand, transformation experiments with genes which coded for chitinases and glucanases have been carried out in T. harzianumstra ins. On the other hand, the medium composition has also been modified in order to eliminate proteolytic degradation of some of the overproduced enzymes. Finally, hybrid chitinolytic enzymes with substrate-binding domains have been produced as an alternative to obtain improved biocontrol strains. The transformant strains, when compared with the wild type, showed improved antifungal capacity against the phytopathogenic fungus Rhizoctonia solani, in in vitro experiments. PMID:15762779

  11. Heat strain during explosive ordnance disposal.

    PubMed

    Stewart, Ian B; Rojek, Amanda M; Hunt, Andrew P

    2011-08-01

    Bomb technicians perform their work while encapsulated in explosive ordnance disposal suits. Designed primarily for safety, these suits have an unintended consequence of impairing the body's natural mechanisms for heat dissipation. Consequently, bomb technicians are known to experience symptoms of heat illness while performing their work. This research provides the first field based analysis of heat strain in bomb technicians. Six participants undertook simulated operational tasks across 2 days of variable climate. All subjects demonstrated high levels of heat strain as evidenced by elevated heart rate, core body temperature, and physiological strain index. Participants also reported signs and symptoms associated with heat illness. These results were exacerbated by more intense physical activity despite being undertaken in a cooler environment. The universal experience of heat strain in this sample has significant implications for the health of bomb technicians and additional research examining methods to improve temperature regulation and performance is warranted. PMID:21882791

  12. The Development of Electrical Strain Gages

    NASA Technical Reports Server (NTRS)

    De Forest, A V; Leaderman, H

    1940-01-01

    The design, construction, and properties of an electrical-resistance strain gage consisting of fine wires molded in a laminated plastic are described. The properties of such gages are discussed and also the problems of molding of wires in plastic materials, temperature compensation, and cementing and removal of the gages. Further work to be carried out on the strain gage, together with instrument problems, is discussed.

  13. Geometric reconstruction using tracked ultrasound strain imaging

    NASA Astrophysics Data System (ADS)

    Pheiffer, Thomas S.; Simpson, Amber L.; Ondrake, Janet E.; Miga, Michael I.

    2013-03-01

    The accurate identification of tumor margins during neurosurgery is a primary concern for the surgeon in order to maximize resection of malignant tissue while preserving normal function. The use of preoperative imaging for guidance is standard of care, but tumor margins are not always clear even when contrast agents are used, and so margins are often determined intraoperatively by visual and tactile feedback. Ultrasound strain imaging creates a quantitative representation of tissue stiffness which can be used in real-time. The information offered by strain imaging can be placed within a conventional image-guidance workflow by tracking the ultrasound probe and calibrating the image plane, which facilitates interpretation of the data by placing it within a common coordinate space with preoperative imaging. Tumor geometry in strain imaging is then directly comparable to the geometry in preoperative imaging. This paper presents a tracked ultrasound strain imaging system capable of co-registering with preoperative tomograms and also of reconstructing a 3D surface using the border of the strain lesion. In a preliminary study using four phantoms with subsurface tumors, tracked strain imaging was registered to preoperative image volumes and then tumor surfaces were reconstructed using contours extracted from strain image slices. The volumes of the phantom tumors reconstructed from tracked strain imaging were approximately between 1.5 to 2.4 cm3, which was similar to the CT volumes of 1.0 to 2.3 cm3. Future work will be done to robustly characterize the reconstruction accuracy of the system.

  14. High Temperature Strain Gage Calibration Fixture

    NASA Technical Reports Server (NTRS)

    Vranas, T. (Inventor)

    1976-01-01

    An apparatus and method are described for calibrating high temperature strain gases which serve for both dead weight and constant deflection measurements. A cantilever support arm allows the test unit to slide into a furnace while one end is subjected to bending strain either by hanging weights upon it or by deflecting it with a push rod. The dual nature of the fixture permits both tests to be run without change of the test specimen or removal from the furnace.

  15. High-Temperature Adhesive Strain Gage Developed

    NASA Technical Reports Server (NTRS)

    Pereira, J. Michael; Roberts, Gary D.

    1997-01-01

    Researchers at the NASA Lewis Research Center have developed a unique strain gage and adhesive system for measuring the mechanical properties of polymers and polymer composites at elevated temperatures. This system overcomes some of the problems encountered in using commercial strain gages and adhesives. For example, typical commercial strain gage adhesives require a postcure at temperatures substantially higher than the maximum test temperature. The exposure of the specimen to this temperature may affect subsequent results, and in some cases may be higher than the glass-transition temperature of the polymer. In addition, although typical commercial strain gages can be used for short times at temperatures up to 370 C, their long-term use is limited to 230 C. This precludes their use for testing some high-temperature polyimides near their maximum temperature capability. Lewis' strain gage and adhesive system consists of a nonencapsulated, unbacked gage grid that is bonded directly to the polymer after the specimen has been cured but prior to the normal postcure cycle. The gage is applied with an adhesive specially formulated to cure under the specimen postcure conditions. Special handling, mounting, and electrical connection procedures were developed, and a fixture was designed to calibrate each strain gage after it was applied to a specimen. A variety of tests was conducted to determine the performance characteristics of the gages at elevated temperatures on PMR-15 neat resin and titanium specimens. For these tests, which included static tension, thermal exposure, and creep tests, the gage and adhesive system performed within normal strain gage specifications at 315 C. An example of the performance characteristics of the gage can be seen in the figure, which compares the strain gage measurement on a polyimide specimen at 315 C with an extensometer measurement.

  16. [Consumption of hydrocarbons by psychrotolerant degrader strains].

    PubMed

    Andeeva, I S; Emel'ianova, E K; Ol'kin, S E; Reznikova, I K; Zagrebel'nyĭ, S N; Repin, V E

    2007-01-01

    Oil-oxidizing microorganisms have been sampled in various regions of Siberia and used in strain associations, which degrade n-alkanes of oil from various fields by 64-92% after 6 days of growth in a wide temperature range. These strains are salt-tolerant and psychrotolerant. They are compatible with aboriginal soil microflora. Promising results have been obtained in experiments on growing plants on oil-polluted soil purified with a biodegrader of this series. PMID:17476811

  17. Strain limit criteria to predict failure

    SciTech Connect

    Flanders, H.E.

    1995-12-31

    In recent years extensive effort has been expended to qualify existing structures for conditions that are beyond the original design basis. Determination of the component failure load is useful for this type of evaluation. This paper presents criteria based upon strain limits to predict the load at failure. The failure modes addressed are excessive plastic deformations, localized plastic strains, and structural instability. The effects of analytical method sophistication, as built configurations, material properties degradation, and stress state are addressed by the criteria.

  18. Hydraulic Calibrator for Strain-Gauge Balances

    NASA Technical Reports Server (NTRS)

    Skelly, Kenneth; Ballard, John

    1987-01-01

    Instrument for calibrating strain-gauge balances uses hydraulic actuators and load cells. Eliminates effects of nonparallelism, nonperpendicularity, and changes of cable directions upon vector sums of applied forces. Errors due to cable stretching, pulley friction, and weight inaccuracy also eliminated. New instrument rugged and transportable. Set up quickly. Developed to apply known loads to wind-tunnel models with encapsulated strain-gauge balances, also adapted for use in calibrating dynamometers, load sensors on machinery and laboratory instruments.

  19. Load cell having strain gauges of arbitrary location

    DOEpatents

    Spletzer, Barry

    2007-03-13

    A load cell utilizes a plurality of strain gauges mounted upon the load cell body such that there are six independent load-strain relations. Load is determined by applying the inverse of a load-strain sensitivity matrix to a measured strain vector. The sensitivity matrix is determined by performing a multivariate regression technique on a set of known loads correlated to the resulting strains. Temperature compensation is achieved by configuring the strain gauges as co-located orthogonal pairs.

  20. Strain-tunable Josephson current in graphene-superconductor junction

    NASA Astrophysics Data System (ADS)

    Wang, Y.; Liu, Y.; Wang, B.

    2013-10-01

    Strain effects on Josephson current in a graphene-superconductor junction are explored theoretically. It is demonstrated that the supercurrent is an oscillatory function of zigzag direction strain with a strain-dependent oscillating frequency. Interestingly, it is found that the Josephson current under armchair direction strain can be turned on/off with a cutoff strain. In view of the on/off properties of the Josephson current, we propose the strained graphene Josephson junction to be utilized as a supercurrent switch.

  1. A high-strain-rate superplastic ceramic.

    PubMed

    Kim, B N; Hiraga, K; Morita, K; Sakka, Y

    2001-09-20

    High-strain-rate superplasticity describes the ability of a material to sustain large plastic deformation in tension at high strain rates of the order of 10-2 to 10-1 s-1 and is of great technological interest for the shape-forming of engineering materials. High-strain-rate superplasticity has been observed in aluminium-based and magnesium-based alloys. But for ceramic materials, superplastic deformation has been restricted to low strain rates of the order of 10-5 to 10-4 s-1 for most oxides and nitrides with the presence of intergranular cavities leading to premature failure. Here we show that a composite ceramic material consisting of tetragonal zirconium oxide, magnesium aluminate spinel and alpha-alumina phases exhibits superplasticity at strain rates up to 1 s-1. The composite also exhibits a large tensile elongation, exceeding 1,050 per cent for a strain rate of 0.4 s-1. The tensile flow behaviour and deformed microstructure of the material indicate that superplasticity is due to a combination of limited grain growth in the constitutive phases and the intervention of dislocation-induced plasticity in the zirconium oxide phase. We suggest that the present results hold promise for the application of shape-forming technologies to ceramic materials. PMID:11565026

  2. Fermentation studies using Saccharomyces diastaticus yeast strains

    SciTech Connect

    Erratt, J.A.; Stewart, G.G.

    1981-01-01

    The yeast species, Saccharomyces diastaticus, has the ability to ferment starch and dextrin, because of the extracellular enzyme, glucoamylase, which hydrolyzes the starch/dextrin to glucose. A number of nonallelic genes--DEX 1, DEX 2, and dextrinase B which is allelic to STA 3--have been isolated, which impart to the yeast the ability to ferment dextrin. Various diploid yeast strains were constructed, each being either heterozygous or homozygous for the individual dextrinase genes. Using 12 (sup 0) plato hopped wort (30% corn adjunct) under agitated conditions, the fermentation rates of the various diploid yeast strains were monitored. A gene-dosage effect was exhibited by yeast strains containing DEX 1 or DEX 2, however, not with yeast strains containing dextrinase B (STA 3). The fermentation and growth rates and extents were determined under static conditions at 14.4 C and 21 C. With all yeast strains containing the dextrinase genes, both fermentation and growth were increased at the higher incubation temperature. Using 30-liter fermentors, beer was produced with the various yeast strains containing the dextrinase genes and the physical and organoleptic characteristics of the products were determined. The concentration of glucose in the beer was found to increase during a 3-mo storage period at 21 C, indicating that the glucoamylase from Saccharomyces diastaticus is not inactivated by pasteurization. (Refs. 36).

  3. Strain Tuning of Ferroelectric Thin Films *

    NASA Astrophysics Data System (ADS)

    Schlom, Darrell G.; Chen, Long-Qing; Eom, Chang-Beom; Rabe, Karin M.; Streiffer, Stephen K.; Triscone, Jean-Marc

    2007-08-01

    Predictions and measurements of the effect of biaxial strain on the properties of epitaxial ferroelectric thin films and superlattices are reviewed. Results for single-layer ferroelectric films of biaxially strained SrTiO3, BaTiO3, and PbTiO3 as well as PbTiO3/SrTiO3 and BaTiO3/SrTiO3 superlattices are described. Theoretical approaches, including first principles, thermodynamic analysis, and phase-field models, are applied to these biaxially strained materials, the assumptions and limitations of each technique are explained, and the predictions are compared. Measurements of the effect of biaxial strain on the paraelectric-to-ferroelectric transition temperature (TC) are shown, demonstrating the ability of percent-level strains to shift TC by hundreds of degrees in agreement with the predictions that predated such experiments. Along the way, important experimental techniques for characterizing the properties of strained ferroelectric thin films and superlattices, as well as appropriate substrates on which to grow them, are mentioned.

  4. Fiber optic strain monitoring for pipelines

    SciTech Connect

    Berthold, J.W.

    1998-04-08

    The objective of this project was to demonstrate the feasibility of using fiber optic Bragg grating sensors (BGS) to measure axial and bending strain in pipes. Work was performed by McDermott Technology Inc. (MTI) and included BGS design and procurement. In addition to the pipe strain testing, a number of BGS evaluations were performed. Several methods were evaluated to protect and encapsulate the BGS, which are embedded inside an optical fiber, and strain transfer tests were performed on two of the encapsulation approaches. A high strain bending test to failure was performed on one BGS. A special test section was used to characterize the performance of the BGS and compare to standard electrical resistance foil strain gages. Two sets of pipe strain tests were performed. In the first test series, optical fiber was positioned along the pipe test section and embedded BGS were attached directly to the outside of the pipe wall. In the second tests series, the BGS were encapsulated inside a stainless steel tube which was attached to the outside of the pipe wall. All the tests were successfully completed, the data analyzed, and the results summarized in this report.

  5. [Screening of strain producing extracellular penicillin acylase].

    PubMed

    Wang, Z; Han, W; Men, D; Wang, Q

    1992-04-01

    Ninety-eight strains having extracellular penicillin acylase activity were derived from soil samples by colour-developing method. 10 strains of them possess higher activity of penicillin acylase. All of those are found to be Bacillus megaterium. The optimum condition of enzyme production was investigated with the strain No. 46 which is from No. 247 by single colony isolation. The productivity of penicillin acylase in the optimum condition have been enhanced 2.5 times more than that in the screening condition. The mutant strain, Bacillus megaterium UL-81, which penicillin acylase activity reached the level of 723u/100ml of broth was obtained from No. 46 by treatment with physical and chemical factors. The penicillin acylase activity of UL-81 can reach 820u/100 ml in 500L fermentor. The mutant strain differed from parent strain in the morphology of colony, the size of cells, the effect of concentration and the addition time of phenylacetic acid on the production of penicillin acylase. PMID:1598760

  6. A closer look at prion strains

    PubMed Central

    Solforosi, Laura; Milani, Michela; Mancini, Nicasio; Clementi, Massimo; Burioni, Roberto

    2013-01-01

    Prions are infectious proteins that are responsible for transmissible spongiform encephalopathies (TSEs) and consist primarily of scrapie prion protein (PrPSc), a pathogenic isoform of the host-encoded cellular prion protein (PrPC). The absence of nucleic acids as essential components of the infectious prions is the most striking feature associated to these diseases. Additionally, different prion strains have been isolated from animal diseases despite the lack of DNA or RNA molecules. Mounting evidence suggests that prion-strain-specific features segregate with different PrPSc conformational and aggregation states. Strains are of practical relevance in prion diseases as they can drastically differ in many aspects, such as incubation period, PrPSc biochemical profile (e.g., electrophoretic mobility and glycoform ratio) and distribution of brain lesions. Importantly, such different features are maintained after inoculation of a prion strain into genetically identical hosts and are relatively stable across serial passages. This review focuses on the characterization of prion strains and on the wide range of important implications that the study of prion strains involves. PMID:23357828

  7. Strain-displacement relations for strain engineering in single-layer 2d materials

    NASA Astrophysics Data System (ADS)

    Midtvedt, Daniel; Lewenkopf, Caio H.; Croy, Alexander

    2016-03-01

    We investigate the electromechanical coupling in single-layer 2d materials. For non-Bravais lattices, we find important corrections to the standard macroscopic strain-microscopic atomic-displacement theory. We put forward a general and systematic approach to calculate strain-displacement relations for several classes of 2d materials. We apply our findings to graphene as a study case, by combining a tight binding and a valence force-field model to calculate electronic and mechanical properties of graphene nanoribbons under strain. The results show good agreement with the predictions of the Dirac equation coupled to continuum mechanics. For this long wave-limit effective theory, we find that the strain-displacement relations lead to a renormalization correction to the strain-induced pseudo-magnetic fields. A similar renormalization is found for the strain-induced band-gap of black phosphorous. Implications for nanomechanical properties and electromechanical coupling in 2d materials are discussed.

  8. Internal elastic strains in an IF steel following changes in strain path

    SciTech Connect

    Wilson, D.V.; Bate, P.S.

    1996-08-01

    Residual elastic strains present in an IF steel following rolling and subsequent tensile deformation have been evaluated using X-ray diffraction. It was possible to decompose diffraction profiles into two symmetrical components notionally corresponding to dislocation walls and cell interiors and so estimate the volume fractions and mean elastic strains associated with these components of the microstructure following different deformation modes. The residual long range elastic strains were very small following rolling, but they were much greater following subsequent tensile elongation to macroscopic yield. The mean strains could only account for about one-third of the strain induced anisotropy of flow stress. It is concluded that insufficient dislocations accumulate at cell walls at macroscopic yield following a path change to give homogeneous loading of the dislocation walls, and that this effect can account for the difference between the macroscopic mechanical behavior and predictions from the X-ray strain measurements.

  9. Strain rate change tests with the Split Hopkinson Bar method

    NASA Astrophysics Data System (ADS)

    Isakov, M.; Kokkonen, J.; Östman, K.; Kuokkala, V.-T.

    2016-05-01

    In this paper, methods to produce rapid strain rate changes for strain rate sensitivity measurements in Split Hopkinson Bar arrangements are presented and discussed. Two different cases are considered: a strain rate change test within the high strain rate region in compression, and a tension test incorporating a large strain rate jump directly from the low strain rate region to high strain rates. The former method is based on the loading wave amplitude manipulation, while the latter method is based on the incorporation of a low strain rate loading device into a Tensile Split Hopkinson Bar apparatus.

  10. COMPARISON OF A REFERENCE STRAIN AND FOUR GEOGRAPHICAL STRAINS OF 'ARTEMIA' AS FOOD FOR WINTER FLOUNDER (PSEUDOPLEURONECTES AMERICANUS) LARVAE

    EPA Science Inventory

    A reference strain and four commercially available geographical strains of Artemia nauplii were each tested as a diet for winter flounder (Pseudopleuronectes americanus) larvae. The Reference strain was provided by the Artemia Reference Center, Ghent, Belgium. The geographical st...

  11. Complete Genome Sequence of Rat Cytomegalovirus Strain ALL-03 (Malaysian Strain).

    PubMed

    Balakrishnan, Krishnan Nair; Abdullah, Ashwaq Ahmed; Camalxaman, Siti Nazrina; Quah, Yi Wan; Abba, Yusuf; Hani, Homayoun; Loh, Hwei San; Kamal, Farina Mustaffa; Zeenathul, Nazariah Allaudin; Aini, Ideris; Omar, A R; Noordin, Mohamed Mustapha; Mohd Azmi, Mohd Lila

    2015-01-01

    The complete genome sequence of the ALL-03 strain of rat cytomegalovirus (RCMV) has been determined. The RCMV genome has a length of 197,958 bp and is arranged as a single unique sequence flanked by 504-bp terminal direct repeats. This strain is closely related to the English strain of RCMV in terms of genetic arrangement but differs slightly in size. PMID:26044413

  12. The influence of strain rate and hydrogen on the plane-strain ductility of Zircaloy cladding

    SciTech Connect

    Link, T.M.; Motta, A.T.; Koss, D.A.

    1998-03-01

    The authors studied the ductility of unirradiated Zircaloy-4 cladding under loading conditions prototypical of those found in reactivity-initiated accidents (RIA), i.e.: near plane-strain deformation in the hoop direction (transverse to the cladding axis) at room temperature and 300 C and high strain rates. To conduct these studies, they developed a specimen configuration in which near plane-strain deformation is achieved in the gage section, and a testing methodology that allows one to determine both the limit strain at the onset of localized necking and the fracture strain. The experiments indicate that there is little effect of strain rate (10{sup {minus}3} to 10{sup 2} s{sup {minus}1}) on the ductility of unhydrided Zircaloy tubing deformed under near plane-strain conditions at either room temperature or 300 C. Preliminary experiments on cladding containing 190 ppm hydrogen show only a small loss of fracture strain but no clear effect on limit strain. The experiments also indicate that there is a significant loss of Zircaloy ductility when surface flaws are present in the form of thickness imperfections.

  13. Bone strain magnitude is correlated with bone strain rate in tetrapods: implications for models of mechanotransduction

    PubMed Central

    Aiello, B. R.; Iriarte-Diaz, J.; Blob, R. W.; Butcher, M. T.; Carrano, M. T.; Espinoza, N. R.; Main, R. P.; Ross, C. F.

    2015-01-01

    Hypotheses suggest that structural integrity of vertebrate bones is maintained by controlling bone strain magnitude via adaptive modelling in response to mechanical stimuli. Increased tissue-level strain magnitude and rate have both been identified as potent stimuli leading to increased bone formation. Mechanotransduction models hypothesize that osteocytes sense bone deformation by detecting fluid flow-induced drag in the bone's lacunar–canalicular porosity. This model suggests that the osteocyte's intracellular response depends on fluid-flow rate, a product of bone strain rate and gradient, but does not provide a mechanism for detection of strain magnitude. Such a mechanism is necessary for bone modelling to adapt to loads, because strain magnitude is an important determinant of skeletal fracture. Using strain gauge data from the limb bones of amphibians, reptiles, birds and mammals, we identified strong correlations between strain rate and magnitude across clades employing diverse locomotor styles and degrees of rhythmicity. The breadth of our sample suggests that this pattern is likely to be a common feature of tetrapod bone loading. Moreover, finding that bone strain magnitude is encoded in strain rate at the tissue level is consistent with the hypothesis that it might be encoded in fluid-flow rate at the cellular level, facilitating bone adaptation via mechanotransduction. PMID:26063842

  14. Strain analysis and strain path modelling in the Loch Tollie gneisses, Gairloch, NW Scotland

    NASA Astrophysics Data System (ADS)

    Odling, N. E.

    A quantitative structural analysis is presented for the Loch Tullie gneisses of the Lewisian complex outcropping at Gairloch. The gneisses and the dykes they contain are folded into a large antiformal structure known as the Tollic Antiform. Quartz aggregates in quartzo-feldspathic gneisses have been used as finite strain markers in eleven specimens across the antiform. Two models, using rotational strain (simple shear) and irrotational strain (pure shear), are used to reconstruct the strain path. Results show that only the rotational strain model satisfies the strain data and the field evidence, and indicates a steeply northeast (75°) dipping shear plane and moderately northwest (55°) plunging shear direction, with a southwest-side-down sense of shear. A strain profile is constructed for the Tollie gneisses using the model and the attitude of gneissose layering. This shows increasing shear strain to the southwest to a maximum gamma value of approximately 8. The strain profile indicates a horizontal dextral displacement of 4.7 km and a vertical displacement of 6.8 km for the Tollie gneisses. The Tollie Antiform thus lies on the northeast margin of a large-scale shear zone, the main zone of deformation of which can be traced southwestwards some 4 km. Such a shear zone presents a major tectonic boundary within the Lewisian of northwest Scotland.

  15. Genome-Wide Transcription Study of Cryptococcus neoformans H99 Clinical Strain versus Environmental Strains

    PubMed Central

    Movahed, Elaheh; Munusamy, Komathy; Tan, Grace Min Yi; Looi, Chung Yeng; Tay, Sun Tee; Wong, Won Fen

    2015-01-01

    The infection of Cryptococcus neoformans is acquired through the inhalation of desiccated yeast cells and basidiospores originated from the environment, particularly from bird’s droppings and decaying wood. Three environmental strains of C. neoformans originated from bird droppings (H4, S48B and S68B) and C. neoformans reference clinical strain (H99) were used for intranasal infection in C57BL/6 mice. We showed that the H99 strain demonstrated higher virulence compared to H4, S48B and S68B strains. To examine if gene expression contributed to the different degree of virulence among these strains, a genome-wide microarray study was performed to inspect the transcriptomic profiles of all four strains. Our results revealed that out of 7,419 genes (22,257 probes) examined, 65 genes were significantly up-or down-regulated in H99 versus H4, S48B and S68B strains. The up-regulated genes in H99 strain include Hydroxymethylglutaryl-CoA synthase (MVA1), Mitochondrial matrix factor 1 (MMF1), Bud-site-selection protein 8 (BUD8), High affinity glucose transporter 3 (SNF3) and Rho GTPase-activating protein 2 (RGA2). Pathway annotation using DAVID bioinformatics resource showed that metal ion binding and sugar transmembrane transporter activity pathways were highly expressed in the H99 strain. We suggest that the genes and pathways identified may possibly play crucial roles in the fungal pathogenesis. PMID:26360021

  16. Imploding Liner Material Strength Measurements at High-Strain and High Strain Rate

    SciTech Connect

    Bartsch, R.R.; Lee, H.; Holtkamp, D.; Wright, B.; Stokes, J.; Morgan, D.; Anderson, W.; Broste, W.

    1998-10-18

    Imploding, cylindrical liners provide a unique, shockless means of simultaneously accessing high strain and high-strain-rate for measurement of strength of materials in plastic flow. The radial convergence in the liner geometry results in the liner thickening as the circumference becomes smaller. Strains of up to {approximately}1.25 and strain rates of up to {approximately}10{sup 6} sec{sup -1} can be readily achieved in a material sample placed inside of an aluminum driver liner, using the Pegasus II capacitor bank. This provides yield strength data at conditions where none presently exists. The heating from work done against the yield strength is measured with multichannel pyrometry from infrared radiation emitted by the material sample. The temperature data as a function of liner position are unfolded to give the yield strength along the strain, strain-rate trajectory. Proper design of the liner and sample configuration ensures that the current diffused into the sample adds negligible heating. An important issue, in this type of temperature measurement, is shielding of the pickup optics from other sources of radiation. At strains greater than those achievable on Pegasus, e.g. the LANL Atlas facility, some materials may be heated all the way to melt by this process. Recent data on 6061-T6 Aluminum will be compared with an existing model for strain and strain-rate heating. The liner configuration and pyrometry diagnostic will also be discussed.

  17. A numerical method for determining the strain rate intensity factor under plane strain conditions

    NASA Astrophysics Data System (ADS)

    Alexandrov, S.; Kuo, C.-Y.; Jeng, Y.-R.

    2016-07-01

    Using the classical model of rigid perfectly plastic solids, the strain rate intensity factor has been previously introduced as the coefficient of the leading singular term in a series expansion of the equivalent strain rate in the vicinity of maximum friction surfaces. Since then, many strain rate intensity factors have been determined by means of analytical and semi-analytical solutions. However, no attempt has been made to develop a numerical method for calculating the strain rate intensity factor. This paper presents such a method for planar flow. The method is based on the theory of characteristics. First, the strain rate intensity factor is derived in characteristic coordinates. Then, a standard numerical slip-line technique is supplemented with a procedure to calculate the strain rate intensity factor. The distribution of the strain rate intensity factor along the friction surface in compression of a layer between two parallel plates is determined. A high accuracy of this numerical solution for the strain rate intensity factor is confirmed by comparison with an analytic solution. It is shown that the distribution of the strain rate intensity factor is in general discontinuous.

  18. Heterogeneity within Corynebacterium minutissimum strains is explained by misidentified Corynebacterium amycolatum strains.

    PubMed

    Zinkernagel, A S; von Graevenitz, A; Funke, G

    1996-09-01

    Forty-eight clinical strains that were tentatively identified as Corynebacterium minutissimum on the basis of standard biochemical reactions (Hollis-Weaver tables) as well as by the use of the API (RAPID) Coryne system were examined further. Two different groups of strains were observed. The first group (including the type strain of C minutissimum) contained 27 strains showing creamy colonies. These strains grew homogeneously in 6.5% NaCl broth, exhibited DNase activity, were susceptible to the vibriocidal compound O/129, produced succinic acid, and contained mycolic acids. The second group comprised 21 strains with dry colonies. They grew in clumps at the surface of 6.5% NaCl broth, DNase activity was not detected, they were resistant against O/129, produced large amounts of propionic acid, and mycolic acids were not detected. In combination with quantitative DNA-DNA hybridizations, it was demonstrated that strains of the second cluster belonged, in fact, to C amycolatum. Furthermore, it was observed that a few C minutissimum strains may also ferment mannitol. These data indicate that the clinical microbiologist must be careful not to misidentify C amycolatum strains as C minutissimum. PMID:8816598

  19. True stress-strain curve acquisition for irradiated stainless steel including the range exceeding necking strain

    NASA Astrophysics Data System (ADS)

    Kamaya, Masayuki; Kitsunai, Yuji; Koshiishi, Masato

    2015-10-01

    True stress-strain curves were obtained for irradiated 316L stainless steel by a tensile test and by a curve estimation procedure. In the tensile test, the digital image correlation technique together with iterative finite element analysis was applied in order to identify curves for strain larger than the necking strain. The true stress-strain curves were successfully obtained for the strain of more than 0.4 whereas the necking strain was about 0.2 in the minimum case. The obtained true stress-strain curves were approximated well with the Swift-type equation including the post-necking strain even if the exponential constant n was fixed to 0.5. Then, the true stress-strain curves were estimated by a curve estimation procedure, which was referred to as the K-fit method. Material properties required for the K-fit method were the yield and ultimate strengths or only the yield strength. Some modifications were made for the K-fit method in order to improve estimation accuracy for irradiated stainless steels.

  20. Stress-Strain Relation and strain-Induced Crystallization in Rubber

    SciTech Connect

    Toki,S.

    2006-01-01

    Rubber is composed of flexible chains and network points. Theory of rubber elasticity succeeds to elucidate stress-strain relation of rubber using the inverse Langevin equation of entropy modulus. However, actual rubber is much different from ideal networks composed of ideal rubber chains. Network points may not distribute homogeneously and the molecular weight between two network points may show wide distribution. Flexible chains show strain-induced crystallization. Recent synchrotron X-ray and simultaneous stress-strain measurements reveal that strain-induced crystallization reduces the stress by increasing the length of molecules along the stretching direction. Also, strain-induced crystals are created not at the middle of the network points, but at the close location to the network points. The hybrid structure of strain-induced crystallites and network points may be stronger than network points alone. Therefore, strain induced crystallization may increase the tensile strength of rubber by two mechanisms, they are, increase of elongation at break and reinforcement of network points. Natural rubber has biotic network points in nature. After vulcanization, the biotic network may contribute the superior toughness of NR, comparing to IR. Carbon filled NR also shows strain induced crystallization. In order to acquire high tensile strength, molecules should have higher flexibility to perform strain induced crystallization by selecting a kind of carbon blacks, an accelerator and a curing condition.

  1. Elastocaloric cooling processes: The influence of material strain and strain rate on efficiency and temperature span

    NASA Astrophysics Data System (ADS)

    Schmidt, Marvin; Schütze, Andreas; Seelecke, Stefan

    2016-06-01

    This paper discusses the influence of material strain and strain rate on efficiency and temperature span of elastocaloric cooling processes. The elastocaloric material, a newly developed quaternary Ni-Ti-Cu-V alloy, is characterized at different maximum strains and strain rates. The experiments are performed with a specially designed test setup, which enables the measurement of mechanical and thermal process parameters. The material efficiency is compared to the efficiency of the Carnot process at equivalent thermal operation conditions. This method allows for a direct comparison of the investigated material with other caloric materials.

  2. Inexpensive Implementation of Many Strain Gauges

    NASA Technical Reports Server (NTRS)

    Berkun, Andrew C.

    2010-01-01

    It has been proposed to develop arrays of strain gauges as arrays of ordinary metal film resistors and associated electronic readout circuitry on printed circuit boards or other suitable substrates. This proposal is a by-product of a development of instrumentation utilizing metal film resistors on printed-circuit boards to measure temperatures at multiple locations. In the course of that development, it was observed that in addition to being sensitive to temperature, the metal film resistors were also sensitive to strains in the printed-circuit boards to which they were attached. Because of the low cost of ordinary metal film resistors (typically <$0.01 apiece at 2007 prices), the proposal could enable inexpensive implementation of arrays of many (e.g., 100 or more) strain gauges, possibly concentrated in small areas. For example, such an array could be designed for use as a computer keyboard with no moving parts, as a device for sensing the shape of an object resting on a surface, or as a device for measuring strains at many points on a mirror, a fuel tank, an airplane wing, or other large object. Ordinarily, the effect of strain on resistance would be regarded as a nuisance in a temperature-measuring application, and the effect of temperature on resistance would be regarded as a nuisance in a strain-measuring application. The strain-induced changes in resistance of the metal film resistors in question are less than those of films in traditional strain gauges. The main novel aspect of present proposal lies in the use of circuitry affording sufficient sensitivity to measure strain plus means for compensating for the effect of temperature. For an array of metal film resistors used as proposed, the readout circuits would include a high-accuracy analog-to-digital converter fed by a low noise current source, amplifier chain, and an analog multiplexer chain. Corrections would be provided by use of high-accuracy calibration resistors and a temperature sensor. By use of

  3. Volume strain within the Geysers geothermal field

    SciTech Connect

    Mossop, Antony; Segall, Paul

    1999-12-10

    During the 1970s and 1980s. The Geysers geothermal region was rapidly developed as a site of geothermal power production. The likelihood that this could cause significant strain within the reservoir, with corresponding surface displacements, led to a series of deformation monitoring surveys. In 1973, 1975, 1977, and 1980, The Geysers region was surveyed using first-order, class I, spirit leveling. In 1994, 1995, and 1996, many of the leveling control monuments were resurveyed using high-precision Global Positioning System receivers. The two survey methods are reconciled using the GEOID96 geoid model. The displacements are inverted to determine volume strain within the reservoir. For the period 1980-1994, peak volume strains in excess of 5x10{sup -4} are imaged. There is an excellent correlation between the observed changes in reservoir steam pressures and the imaged volume strain. If reservoir pressure changes are inducing volume strain, then the reservoir quasi-static bulk modulus K must be <4.6x10{sup 9} Pa. However, seismic velocities indicate a much stiffer reservoir with K=3.4x10{sup 10} Pa. This apparent discrepancy is shown to be consistent with predicted frequency dependence in K for fractured and water-saturated rock. Inversion of surface deformation data therefore appears to be a powerful method for imaging pressure change within the body of the reservoir. Correlation between induced seismicity at The Geysers and volume strain is observed. However, earthquake distribution does not appear to have a simple relationship with volume strain rate. (c) 1999 American Geophysical Union.

  4. Psychological strains found in the suicides of 72 celebrities.

    PubMed

    Zhang, Jie; Tan, Jiandan; Lester, David

    2013-07-01

    The interpretation of suicide involves theories from many disciplines, and the strain theory of suicide is a social-psychological model that attempts to account for this complicated behavior. We have earlier explored the presence of psychological strains in a number of diverse samples of suicides and in the present study, we identified the strains experienced throughout the lives as documented in the biographies of 72 celebrities. The biographies were systematically identified through a number of requirements and composed by one of the authors of this study years before the strain theory of suicide was proposed. A graduate student coder, who was unaware of the strain theory of suicide, was hired to carry out a content analysis of the biography essays and categorize the life events and the responses of the suicide in terms of the four types of strains. Of the 72 suicides, one had no strains, one had all the four strains, four had only one, 30 had two, and 36 had three strains. The most common strain was aspiration strain (97%), followed by deprivation strain (89%), value strain (54%) and coping deficiency strain (4%). It is also noted that religious celebrities were more likely to experience value strain, while those celebrities who had experienced a downhill path in their careers were more likely to experience deprivation and coping strains. This analysis of the 72 celebrity suicides supported the strain theory of suicide. PMID:23462347

  5. The Effect of Ivermectin in Seven Strains of Aedes aegypti (Diptera: Culicidae) Including a Genetically Diverse Laboratory Strain and Three Permethrin Resistant Strains

    PubMed Central

    Deus, K. M.; Saavedra-rodriguez, K.; Butters, M. P.; Black, W. C.; Foy, B. D.

    2014-01-01

    Seven different strains of Aedes aegypti (L.), including a genetically diverse laboratory strain, three laboratory-selected permethrin-resistant strains, a standard reference strain, and two recently colonized strains were fed on human blood containing various concentrations of ivermectin. Ivermectin reduced adult survival, fecundity, and hatch rate of eggs laid by ivermectin-treated adults in all seven strains. The LC50 of ivermectin for adults and the concentration that prevented 50% of eggs from hatching was calculated for all strains. Considerable variation in adult survival after an ivermectin-bloodmeal occurred among strains, and all three permethrin-resistant strains were significantly less susceptible to ivermectin than the standard reference strain. The hatch rate after an ivermectin bloodmeal was less variable among strains, and only one of the permethrin-resistant strains differed significantly from the standard reference strain. Our studies suggest that ivermectin induces adult mortality and decreases the hatch rate of eggs through different mechanisms. A correlation analysis of log-transformed LC50 among strains suggests that permethrin and ivermectin cross-resistance may occur. PMID:22493855

  6. Anisotropic nature of radially strained metal tubes

    NASA Astrophysics Data System (ADS)

    Strickland, Julie N.

    Metal pipes are sometimes swaged by a metal cone to enlarge them, which increases the strain in the material. The amount of strain is important because it affects the burst and collapse strength. Burst strength is the amount of internal pressure that a pipe can withstand before failure, while collapse strength is the amount of external pressure that a pipe can withstand before failure. If the burst or collapse strengths are exceeded, the pipe may fracture, causing critical failure. Such an event could cost the owners and their customers millions of dollars in clean up, repair, and lost time, in addition to the potential environmental damage. Therefore, a reliable way of estimating the burst and collapse strength of strained pipe is desired and valuable. The sponsor currently rates strained pipes using the properties of raw steel, because those properties are easily measured (for example, yield strength). In the past, the engineers assumed that the metal would be work-hardened when swaged, so that yield strength would increase. However, swaging introduces anisotropic strain, which may decrease the yield strength. This study measured the yield strength of strained material in the transverse and axial direction and compared them to raw material, to determine the amount of anisotropy. This information will be used to more accurately determine burst and collapse ratings for strained pipes. More accurate ratings mean safer products, which will minimize risk for the sponsor's customers. Since the strained metal has a higher yield strength than the raw material, using the raw yield strength to calculate burst and collapse ratings is a conservative method. The metal has even higher yield strength after strain aging, which indicates that the stresses are relieved. Even with the 12% anisotropy in the strained and 9% anisotropy in the strain aged specimens, the raw yield strengths are lower and therefore more conservative. I recommend that the sponsor continue using the raw

  7. [Acetobutylic fermentation: strains and regional raw materials].

    PubMed

    Benassi, F O; Bloos, R K; de Rambaldo, L A

    1983-01-01

    The purpose of the present work was to show, as a first stage, that it is possible to characterize autochtohnous strains of Clostridium acetobutilicum of a good solvent producing capacity, specially N-butanol, through the utilization of suitable techniques for isolating anaerobic microorganisms. Cassava roots were employed as raw material using suitable culture media and an anaerobic jar of cold catalyst. The fermentative capacity of the strains thus isolated was evaluated against a control strain of Clostridium acetobutilicum. Even though some of the strains showed a greater solvent producing power, most of them showed lower fermentation capacity than the control strain, which could be increased, by applying successive thermic treatments. As a second stage, and due to the low cost production of cassava in the Province of Misiones, we studied its utilization as an acetone-butanol fermentation substrate. Mashes composed of binary mixtures of cassava flour and variable amounts of integral flour maize or soy were treated with selected "starters" of Clostridium acetobutilicum, being further processed according to standardized techniques in order to obtain the already mentioned solvents. Mashes concentration influence was also studied using culture media the composition of which proved to be excellent in all experiments carried out under "static system" conditions. The highest fermentative yields (maximum value recorded: 26,20 g of total solvents, with respect to dry solids), were recorded for mashes obtained from mixtures containing integral maize flour; these showed a higher degree of nutrients utilization than those prepared with integral soy flour. PMID:6400763

  8. Secretome analysis of Clostridium difficile strains.

    PubMed

    Boetzkes, Alexander; Felkel, Katharina Wiebke; Zeiser, Johannes; Jochim, Nelli; Just, Ingo; Pich, Andreas

    2012-08-01

    Clostridium difficile causes infections ranging from mild C. difficile-associated diarrhea to severe pseudomembranous colitis. Since 2003 new hypervirulent C. difficile strains (PCR ribotype 027) emerged characterized by a dramatically increased mortality. The secretomes of the three C. difficile strains CDR20291, CD196, and CD630 were analyzed and compared. Proteins were separated and analyzed by means of SDS--PAGE and LC-MS. MS data were analyzed using Mascot and proteins were checked for export signals with SecretomeP and SignalP. LC-MS analysis revealed 158 different proteins in the supernatant of C. difficile. Most of the identified proteins originate from the cytoplasm. Thirty-two proteins in CDR20291, 36 in CD196 and 26 in CD630 were identified to be secreted by C. difficile strains. Those were mainly S-layer proteins, substrate-binding proteins of ABC-transporters, cell wall hydrolases, pilin and unknown hypothetical proteins. Toxin A and toxin B were identified after growth in brain heart infusion medium using immunological techniques. The ADP-ribosyltransferase-binding component protein, which is a part of the binary toxin CDT, was only identified in the hypervirulent ribotype 027 strains. Further proteins that are secreted specifically by hypervirulent strains were identified. PMID:22398929

  9. Crack initiation under generalized plane strain conditions

    SciTech Connect

    Shum, D.K.M.; Merkle, J.G.

    1991-01-01

    A method for estimating the decrease in crack-initiation toughness, from a reference plane strain value, due to positive straining along the crack front of a circumferential flaw in a reactor pressure vessel is presented in this study. This method relates crack initiation under generalized plane strain conditions with material failure at points within a distance of a few crack-tip-opening displacements ahead of a crack front, and involves the formulation of a micromechanical crack-initiation model. While this study is intended to address concerns regarding the effects of positive out-of- plane straining on ductile crack initiation, the approach adopted in this work can be extended in a straightforward fashion to examine conditions of macroscopic cleavage crack initiation. Provided single- parameter dominance of near-tip fields exists in the flawed structure, results from this study could be used to examine the appropriateness of applying plane strain fracture toughness to the evaluation of circumferential flaws, in particular to those in ring-forged vessels which have no longitudinal welds. In addition, results from this study could also be applied toward the analysis of the effects of thermal streaming on the fracture resistance of circumferentially oriented flaws in a pressure vessel. 37 refs., 8 figs., 1 tab.

  10. Extraordinary strain hardening by gradient structure

    PubMed Central

    Wu, XiaoLei; Jiang, Ping; Chen, Liu; Yuan, Fuping; Zhu, Yuntian T.

    2014-01-01

    Gradient structures have evolved over millions of years through natural selection and optimization in many biological systems such as bones and plant stems, where the structures change gradually from the surface to interior. The advantage of gradient structures is their maximization of physical and mechanical performance while minimizing material cost. Here we report that the gradient structure in engineering materials such as metals renders a unique extra strain hardening, which leads to high ductility. The grain-size gradient under uniaxial tension induces a macroscopic strain gradient and converts the applied uniaxial stress to multiaxial stresses due to the evolution of incompatible deformation along the gradient depth. Thereby the accumulation and interaction of dislocations are promoted, resulting in an extra strain hardening and an obvious strain hardening rate up-turn. Such extraordinary strain hardening, which is inherent to gradient structures and does not exist in homogeneous materials, provides a hitherto unknown strategy to develop strong and ductile materials by architecting heterogeneous nanostructures. PMID:24799688

  11. Closure of fatigue cracks at high strains

    NASA Technical Reports Server (NTRS)

    Iyyer, N. S.; Dowling, N. E.

    1985-01-01

    Experiments were conducted on smooth specimens to study the closure behavior of short cracks at high cyclic strains under completely reversed cycling. Testing procedures and methodology, and closure measurement techniques, are described in detail. The strain levels chosen for the study cover from predominantly elastic to grossly plastic strains. Crack closure measurements are made at different crack lengths. The study reveals that, at high strains, cracks close only as the lowest stress level in the cycle is approached. The crack opening is observed to occur in the compressive part of the loading cycle. The applied stress needed to open a short crack under high strain is found to be less than for cracks under small scale yielding. For increased plastic deformations, the value of sigma sub op/sigma sub max is observed to decrease and approaches the value of R. Comparison of the experimental results with existing analysis is made and indicates the limitations of the small scale yielding approach where gross plastic deformation behavior occurs.

  12. Strains and tilts on crustal blocks

    NASA Technical Reports Server (NTRS)

    Bilham, R. G.; Beavan, R. J.

    1979-01-01

    Geodetic work done over the past century is examined to investigate block motion in areas of intense tectonic deformation, with special attention to geodetic releveling data obtained for Japan. Problems in interpreting strainmeter and tiltmeter to study the behavior of crustal blocks and block boundaries are discussed. Block dimensions of 5 to 50 km seem to occur frequently in regions of intense tectonic activity. Block boundaries are often considerably weaker than contiguous crustal blocks, resulting in a concentration of strains at boundaries and decrease of strains within blocks. Block to block variations in tilt phase and magnitude are observed. There is some evidence that block boundaries may exhibit strain-dependent elastic properties or respond viscoelastically, possibly accounting for the slow transmission of tectonic deformation reported in Japan. If nonlinear behavior is characteristic of regions fragmented by crustal blocks, it will generally not be possible to apply a site correction factor based on the observed distortion of tidal or seismic strains in interpreting secular strains.

  13. Production of cyclosporins by Tolypocladium niveum strains.

    PubMed Central

    Isaac, C E; Jones, A; Pickard, M A

    1990-01-01

    Nine strains of Tolypocladium niveum (= inflatum) were compared for their production of cyclosporins. Two of the strains, which were originally from the parental NRRL 8044 strain, were among the lower producers, while seventeen Tolypocladium strains belonging to seven other species produced no detectable cyclosporins. Variable cyclosporin production was observed initially. Once extraction and quantitation methods had been established, spore inoculum density and cultural morphology and carbon and nitrogen sources were found to be among the variables affecting cyclosporin production. Cyclosporin A was identified by cochromatography by using high-performance liquid chromatography, and cyclosporins A, B, and C were identified by gas chromatography-mass spectroscopy; all three compounds exhibited biological activity. They were routinely produced as a mixture in the ratio 7:1:2 in T. niveum UAMH 2472, which was selected on the basis of single-spore isolate total cyclosporin production and was used for most studies. This strain routinely produced total cyclosporin levels of 150 to 200 mg.liter-1 after 12 days of growth on a 2% sorbose-1% vitamin assay Casamino Acids medium. PMID:2327746

  14. Glucosyltransferase gene polymorphism among Streptococcus mutans strains.

    PubMed Central

    Chia, J S; Hsu, T Y; Teng, L J; Chen, J Y; Hahn, L J; Yang, C S

    1991-01-01

    Genetic polymorphisms in genes coding for the glucosyltransferases were detected among Streptococcus mutans serotype c strains by Southern blot analysis with DNA probes located within the gtfB gene (H. Aoki, T. Shiroza, M. Hayakawa, S. Sato, and H. K. Kuramitsu, Infect. Immun. 53:587-594, 1986). Restriction endonucleases were used to examine genomic DNAs isolated from serotype a to h strains. The variations were readily detected among 33 strains of serotype c by EcoRI and PstI restriction enzyme digestions. Serotypes e and f, which are genetically similar to serotype c, also had comparable polymorphism; however, serotypes a, b, d, g, and h did not hybridize to the same DNA probes in parallel experiments. Further analysis of enzymatic activities for glucan synthesis and sucrose-dependent adherence revealed no significant differences among the serotype c strains. Our results suggested that genetic polymorphisms existing in S. mutans serotype c strains may reflect a complexity in genes coding for the glucosyltransferases, which are produced ubiquitously in members of the S. mutans group. Images PMID:1826894

  15. Fast flexible electronics with strained silicon nanomembranes

    PubMed Central

    Zhou, Han; Seo, Jung-Hun; Paskiewicz, Deborah M.; Zhu, Ye; Celler, George K.; Voyles, Paul M.; Zhou, Weidong; Lagally, Max G.; Ma, Zhenqiang

    2013-01-01

    Fast flexible electronics operating at radio frequencies (>1 GHz) are more attractive than traditional flexible electronics because of their versatile capabilities, dramatic power savings when operating at reduced speed and broader spectrum of applications. Transferrable single-crystalline Si nanomembranes (SiNMs) are preferred to other materials for flexible electronics owing to their unique advantages. Further improvement of Si-based device speed implies significant technical and economic advantages. While the mobility of bulk Si can be enhanced using strain techniques, implementing these techniques into transferrable single-crystalline SiNMs has been challenging and not demonstrated. The past approach presents severe challenges to achieve effective doping and desired material topology. Here we demonstrate the combination of strained- NM-compatible doping techniques with self-sustained-strain sharing by applying a strain-sharing scheme between Si and SiGe multiple epitaxial layers, to create strained print-transferrable SiNMs. We demonstrate a new speed record of Si-based flexible electronics without using aggressively scaled critical device dimensions. PMID:23416347

  16. Multiwalled carbon nanotube film for strain sensing

    NASA Astrophysics Data System (ADS)

    Li, X.; Levy, C.; Elaadil, L.

    2008-01-01

    We have studied the possibility of using multiwalled carbon nanotube (MWCNT) films as strain sensors. The MWCNT films were prepared by a solution/filtration method and were bonded directly onto specimens by a nonconductive adhesive. For comparison, conventional foil strain gages were also bonded to the structure on the opposite side. The specimens then underwent a uniaxial tensile load-unload cycle to evaluate them as strain sensors. To ensure good electrical contact between carbon nanotube film and the wires, a thin layer of copper was thermally deposited on both ends of the film as electrodes, and the wires were connected to the electrodes by silver ink. Wheatstone bridges were used to convert the resistance changes of the MWCNTs to voltage output. Results indicated that the output voltages were proportional to the strain readings from the stain indicator. The effect of temperature on the resistance was measured and the MWCNT film resistance was found to be independent of temperature over the range 273-363 K. The optimal film dimension for strain sensing was evaluated as well. Dynamic tests suggest that the MWCNTs were able to extract the structural signature. Our results indicate that MWCNT film is potentially useful for structural health monitoring and vibration control applications.

  17. Strain typing of U.S. scrapie strains using a panel of inbred mice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Prion strains may vary in their ability to transmit to humans and animals. Few experimental studies have been done to provide evidence of differences between U.S. strains of scrapie, which can be distinguished by incubation times in inbred mice, microscopic lesions, immunoreactivity to various anti...

  18. Measurement of high temperature strain by the laser-speckle strain gauge

    NASA Technical Reports Server (NTRS)

    Yamaguchi, I.

    1984-01-01

    By using the laser-speckle strain gauge, the strain of metal at the temperature lower than 250 C is measured. The principle of the gauge is to measure the expansion or contraction of the fine structures of surface by detecting the resultant speckle displacement in an optoelectronic way, whereby the effect of rigid-body motion is automatically cancelled out with the aid of a differential detection system. A transportable apparatus was built and a comparison experiment performed with a resistance strain gauge at room temperature. It has a strain sensitivity of .00002, a gauge length smaller than 1 mm, and no upper limit in a range of strain measurement. In the measurement of high-temperature strain it is free from the need for a dummy gauge and insensitive to an electric drift effect. As examples of strain measurement at high-temperature, thermal expansion and contraction of a top of a soldering iron are measured. The interval of the measurement can be made at shortest 1.6 sec. and the change in the strain is clearly followed until the ultimate stationary temperature is reached.

  19. Effect of strain isolator pad modulus on inplane strain in Shuttle Orbiter thermal protection system tiles

    NASA Technical Reports Server (NTRS)

    Sawyer, J. W.

    1983-01-01

    The thermal protection system used on the Space Shuttle orbiter to determine strains in the reusable surface insulation tiles under simulated flight loads was investigated. The effects of changes in the strain isolator pad (SIP) moduli on the strains in the tile were evaluated. To analyze the SIP/tile system, it was necessary to conduct tests to determine inplane tension and compression modulus and inplane failure strain for the densified layer of the tiles. It is shown that densification of the LI-900 tile material increases the modulus by a factor of 6 to 10 and reduces the failure strain by about 50%. It is indicated that the inplane strain levels in the Shuttle tiles in the highly loaded regions are approximately 2 orders of magnitude lower than the failure strain of the material. It is concluded that most of the LI-900 tiles on the Shuttle could be mounted on a SIP with tensile and shear stiffnesses 10 times those of the present SIP without inplane strain failure in the tile.

  20. Strain Rate Dependence of Compressive Stress-Strain Loops of Several Polymers

    NASA Astrophysics Data System (ADS)

    Nakai, Kenji; Yokoyama, Takashi

    The compressive stress-strain loops of several commercial polymers at strain rates of nearly 700/s are determined in the standard split Hopkinson pressure bar. Four different polymers or typical thermoplastics: ABS, PA-6, PA-66 and PC are tested at room temperature. Cylindrical specimens with a slenderness ratio (= height l /diameter d) of 0.5 are used in the Hopkinson bar tests, and those with l/d = 1.5 as specified in the ASTM Designation E9-89a are used in the static tests. The stress-strain loops in compression at low and intermediate strain rates are measured in an Instron testing machine. The influences of strain rate on the Young's modulus, 2.5% flow stress and dissipation energy are investigated. It is demonstrated that the area within the stress-strain loop (or dissipation energy) increases with increasing strain rate as well as given strain, that is, all polymers tested exhibit intrinsic dynamic viscoelasticity and a high elastic aftereffect following complete unloading.

  1. Dynamic strain aging in magnesium oxide single crystals

    NASA Technical Reports Server (NTRS)

    Srinivasan, M.; Stoebe, T. G.

    1973-01-01

    Strain rate change transients are considered together with aspects of serrated flow, questions of flow stress and work hardening during dynamic strain aging, and time, temperature, and prestrain dependence of strain aging. On continuing the deformation process after aging for certain periods of time for a particular strain, a subsidiary load drop is sometimes observed in addition to the main yield drops.

  2. Complete Genome Sequence of the Oncolytic Sendai virus Strain Moscow.

    PubMed

    Zainutdinov, Sergei S; Tikunov, Artem Y; Matveeva, Olga V; Netesov, Sergei V; Kochneva, Galina V

    2016-01-01

    We report here the complete genome sequence of Sendai virus Moscow strain. Anecdotal evidence for the efficacy of oncolytic virotherapy exists for this strain. The RNA genome of the Moscow strain is 15,384 nucleotides in length and differs from the nearest strain, BB1, by 18 nucleotides and 11 amino acids. PMID:27516510

  3. Complete Genome Sequence of the Oncolytic Sendai virus Strain Moscow

    PubMed Central

    Zainutdinov, Sergei S.; Tikunov, Artem Y.; Matveeva, Olga V.

    2016-01-01

    We report here the complete genome sequence of Sendai virus Moscow strain. Anecdotal evidence for the efficacy of oncolytic virotherapy exists for this strain. The RNA genome of the Moscow strain is 15,384 nucleotides in length and differs from the nearest strain, BB1, by 18 nucleotides and 11 amino acids. PMID:27516510

  4. Pheromonal divergence between two strains of Spodoptera frugiperda

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Abstract- Spodoptera frugiperda consists of two genetically and behaviorally different strains, the corn- and the rice-strain, which seem to be in the process of sympatric speciation. We investigated the role of strain-specific sexual communication as a prezygotic mating barrier between both strains...

  5. Competitiveness of a Genetically Engineered Strain of Trichoderma virens

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The intraspecific competitiveness of a genetically engineered strain of Trichoderma virens was assessed relative to the non-transformed, progenitor strain and an isogenic, auxotrophic strain using a replacement series design. The transformed strain was less fit, but appeared more competitive than t...

  6. Measurement of local values of strains of the briquette by means of special resistance strain gauges

    NASA Astrophysics Data System (ADS)

    Rysz, Jozef

    1997-02-01

    Local measurement of the coal briquette strains during its destruction caused by sudden decrease of pressure of gas filling pores is difficult, because of high strain of coal (exceeds 16%), which results in bursting. A special type of an resistance-strain gauge, which is pressed into a defined position during briquette preparation was elaborated. This gauge is deformed just as the surrounding coal. The strain is measured as a difference in resistance of a mixture of coal grains (briquette material) and short, 8 micrometers dia. graphite fibers. A ca. 0.5 mm thick and ca. 1 mm long gauge was prepared. Its initial resistance constituted several hundreds ohms. The resistance vs. strain dependence is not linear but stable enough in time and does not depend on the type of gas filling briquette pores (e.g. CO2 and He).

  7. Generalizing the Fermi velocity of strained graphene from uniform to nonuniform strain

    NASA Astrophysics Data System (ADS)

    Oliva-Leyva, M.; Naumis, Gerardo G.

    2015-10-01

    The relevance of the strain-induced Dirac point shift to obtain the appropriate anisotropic Fermi velocity of strained graphene is demonstrated. Then a critical revision of the available effective Dirac Hamiltonians is made by studying in detail the limiting case of a uniform strain. An effective Dirac Hamiltonian for nonuniform strain is thus reported, which takes into account all strain-induced effects: changes in the nearest-neighbor hopping parameters, the reciprocal lattice deformation and the true shift of the Dirac point. Pseudomagnetic fields are thus explained by means of position-dependent Dirac cones, whereas complex gauge fields appear as a consequence of a position-dependent Fermi velocity. Also, position-dependent Fermi velocity effects on the spinor wavefunction are considered for interesting cases of deformations such as flexural modes.

  8. Genome sequence of Coxiella burnetii strain Namibia

    PubMed Central

    2014-01-01

    We present the whole genome sequence and annotation of the Coxiella burnetii strain Namibia. This strain was isolated from an aborting goat in 1991 in Windhoek, Namibia. The plasmid type QpRS was confirmed in our work. Further genomic typing placed the strain into a unique genomic group. The genome sequence is 2,101,438 bp long and contains 1,979 protein-coding and 51 RNA genes, including one rRNA operon. To overcome the poor yield from cell culture systems, an additional DNA enrichment with whole genome amplification (WGA) methods was applied. We describe a bioinformatics pipeline for improved genome assembly including several filters with a special focus on WGA characteristics. PMID:25593636

  9. Numerical calculations of strained premixed laminar flames

    NASA Astrophysics Data System (ADS)

    Darabiha, N.; Candel, S.; Marble, F. E.

    The structure of a strained laminar flame in the vicinity of a stagnation point is examined numerically. The stagnation point is established by the counterflow of fresh mixture and hot products. This situation is described by standard reactive boundary layer equations. The numerical scheme used to solve the similar boundary layer equations put in F-V form (block-implicit) is an adaptation of the schemes proposed by Blottner (1979). The calculations are performed first on an uniform grid and then confirmed with an adaptive grid method due to Smooke (1982). Numerical calculations allow an exact description of the flame structure in physical and also reduced coordinates. Predictions of Libby and Williams (1982) for high and intermediate values of the strain rate based on activation energy asymptotics are confirmed. For low strain rates (ordinary unstrained laminar flame) the mass rate of reaction per unit flame area differs from that obtained by activation energy asymptotics.

  10. The breaking strain of neutron star crust

    SciTech Connect

    Kadau, Kai; Horowitz, C J

    2009-01-01

    Mountains on rapidly rotating neutron stars efficiently radiate gravitational waves. The maximum possible size of these mountains depends on the breaking strain of neutron star crust. With multimillion ion molecular dynamics simulations of Coulomb solids representing the crust, we show that the breaking strain of pure single crystals is very large and that impurities, defects, and grain boundaries only modestly reduce the breaking strain to around 0.1. Due to the collective behavior of the ions during failure found in our simulations, the neutron star crust is likely very strong and can support mountains large enough so that their gTavitational wave radiation could limit the spin periods of some stars and might be detectable in large scale interferometers. Furthermore, our microscopic modeling of neutron star crust material can help analyze mechanisms relevant in Magnetar Giant and Micro Flares.

  11. Dialysis Culture of T-Strain Mycoplasmas

    PubMed Central

    Masover, Gerald K.; Hayflick, Leonard

    1974-01-01

    Using dialyzing cultures of T-strain mycoplasmas, it was possible to make some observations relevant to the growth and metabolism of these organisms which would not be possible in nondialyzing cultures due to growth inhibition of the organisms by elevated pH and increased ammonium ion concentration in media containing urea. The rate of ammonia accumulation was found to be related to the initial urea concentration in the medium and could not be accounted for by any change in the multiplication rate of the organisms. More ammonia was generated than could be accounted for by the added urea alone, suggesting that an ammonia-producing activity other than urease may be present in T-strain mycoplasmas. Titers above 107 color change units per ml were achieved in dialysis cultures of a T-strain mycoplasma in the presence of urea, and such titers were maintained for approximately 60 h during dialysis culture in the absence of added urea. PMID:4595203

  12. A photoelastic fiber optic strain gage

    NASA Technical Reports Server (NTRS)

    Su, Wei; Gilbert, John A.; Katsunis, Constantine

    1992-01-01

    This paper reports on the development of a photoelastic fiber optic strain gage sensitive to transverse strain. The sensing element is made from an epoxy resin which is stress frozen to passively achieve the quadrature condition. Light, emitted from an LED operating at 820 nm, is transmitted to and from the sensing element via multimode fibers and the signal is detected using a dual channel operational photodiode/amplifier. This unique combination of optics and electronics produces a fiber optic sensor having a high signal to noise ratio which is lead-in/out insensitive. Results show that strains on the order of 1 microstrain can be measured over an 800 microstrain range and that dummy gages can be used for temperature compensation.

  13. 3-dimensional strain fields from tomographic measurements

    NASA Astrophysics Data System (ADS)

    Haldrup, K.; Nielsen, S. F.; Mishnaevsky, L., Jr.; Beckmann, F.; Wert, J. A.

    2006-08-01

    Understanding the distributions of strain within solid bodies undergoing plastic deformations has been of interest for many years in a wide range of disciplines, ranging from basic materials science to biology. However, the desire to investigate these strain fields has been frustrated by the inaccessibility of the interior of most samples to detailed investigation without destroying the sample in the process. To some extent, this has been remedied by the development of advanced surface measurement techniques as well as computer models based on Finite Element methods. Over the last decade, this situation has changed by the introduction of a range of tomographic methods based both on advances in computer technology and in instrumentation, advances which have opened up the interior of optically opaque samples for detailed investigations. We present a general method for assessing the strain in the interior of marker-containing specimens undergoing various types of deformation. The results are compared with Finite Element modelling.

  14. Realization of a Strained Atomic Wire Superlattice.

    PubMed

    Song, Inkyung; Goh, Jung Suk; Lee, Sung-Hoon; Jung, Sung Won; Shin, Jin Sung; Yamane, Hiroyuki; Kosugi, Nobuhiro; Yeom, Han Woong

    2015-11-24

    A superlattice of strained Au-Si atomic wires is successfully fabricated on a Si surface. Au atoms are known to incorporate into the stepped Si(111) surface to form a Au-Si atomic wire array with both one-dimensional (1D) metallic and antiferromagnetic atomic chains. At a reduced density of Au, we find a regular array of Au-Si wires in alternation with pristine Si nanoterraces. Pristine Si nanoterraces impose a strain on the neighboring Au-Si wires, which modifies both the band structure of metallic chains and the magnetic property of spin chains. This is an ultimate 1D version of a strained-layer superlattice of semiconductors, defining a direction toward the fine engineering of self-assembled atomic-scale wires. PMID:26446292

  15. Strain engineering water transport in graphene nanochannels.

    PubMed

    Xiong, Wei; Liu, Jefferson Zhe; Ma, Ming; Xu, Zhiping; Sheridan, John; Zheng, Quanshui

    2011-11-01

    Using equilibrium and nonequilibrium molecular dynamic simulations, we found that engineering the strain on the graphene planes forming a channel can drastically change the interfacial friction of water transport through it. There is a sixfold change of interfacial friction stress when the strain changes from -10% to 10%. Stretching the graphene walls increases the interfacial shear stress, while compressing the graphene walls reduces it. Detailed analysis of the molecular structure reveals the essential roles of the interfacial potential energy barrier and the structural commensurateness between the solid walls and the first water layer. Our results suggest that the strain engineering is an effective way of controlling the water transport inside nanochannels. The resulting quantitative relations between shear stress and slip velocity and the understanding of the molecular mechanisms will be invaluable in designing graphene nanochannel devices. PMID:22181520

  16. Glycerol production of various strains of saccharomyces

    SciTech Connect

    Radler, F.; Schuetz, H.

    1982-01-01

    The quantity of glycerol as principal by-product of the alcoholic fermentation depends to a large extent on the yeast strain. Different strains of Saccharomyces cerevisiae were found to form amounts of glycerol varying between 4.2 to 10.4 g/L. The formation of glycerol is regarded as a result of the competition between alcohol dehydrogenase and glycerol-3-phosphate dehydrogenase that compete for the reduced coenzyme NADH/sub 2/. High and low glycerol forming yeast strains showed large differences in the activity of glycerol-3-phosphate dehydrogenase and only small variation in the activity of alcohol dehydrogenase. The total amount of glycerol formed was also influenced by amino acids. In thiamine deficient media a decrease in glycerol formation was observed. Experiments indicate a correlation between the formation of acetaldehyde and glycerol and the production of cell mass that may be of practical interest. (Refs. 12).

  17. Divorcing Strain Classification from Species Names.

    PubMed

    Baltrus, David A

    2016-06-01

    Confusion about strain classification and nomenclature permeates modern microbiology. Although taxonomists have traditionally acted as gatekeepers of order, the numbers of, and speed at which, new strains are identified has outpaced the opportunity for professional classification for many lineages. Furthermore, the growth of bioinformatics and database-fueled investigations have placed metadata curation in the hands of researchers with little taxonomic experience. Here I describe practical challenges facing modern microbial taxonomy, provide an overview of complexities of classification for environmentally ubiquitous taxa like Pseudomonas syringae, and emphasize that classification can be independent of nomenclature. A move toward implementation of relational classification schemes based on inherent properties of whole genomes could provide sorely needed continuity in how strains are referenced across manuscripts and data sets. PMID:26947794

  18. Wing Shape Sensing from Measured Strain

    NASA Technical Reports Server (NTRS)

    Pak, Chan-Gi

    2015-01-01

    A new two step theory is investigated for predicting the deflection and slope of an entire structure using strain measurements at discrete locations. In the first step, a measured strain is fitted using a piecewise least squares curve fitting method together with the cubic spline technique. These fitted strains are integrated twice to obtain deflection data along the fibers. In the second step, computed deflection along the fibers are combined with a finite element model of the structure in order to extrapolate the deflection and slope of the entire structure through the use of System Equivalent Reduction and Expansion Process. The theory is first validated on a computational model, a cantilevered rectangular wing. It is then applied to test data from a cantilevered swept wing model.

  19. Genomic diversity of Bombyx mori nucleopolyhedrovirus strains.

    PubMed

    Xu, Yi-Peng; Cheng, Ruo-Lin; Xi, Yu; Zhang, Chuan-Xi

    2013-07-01

    Bombyx mori nucleopolyhedrovirus (BmNPV) is a baculovirus that selectively infects the domestic silkworm. In this study, six BmNPV strains were compared at the whole genome level. We found that the number of bro genes and the composition of the homologous regions (hrs) are the two primary areas of divergence within these genomes. When we compared the ORFs of these BmNPV variants, we noticed a high degree of sequence divergence in the ORFs that are not baculovirus core genes. This result is consistent with the results derived from phylogenetic trees and evolutionary pressure analyses of these ORFs, indicating that ORFs that are not core genes likely play important roles in the evolution of BmNPV strains. The evolutionary relationships of these BmNPV strains might be explained by their geographic origins or those of their hosts. In addition, the total number of hr palindromes seems to affect viral DNA replication in Bm5 cells. PMID:23639478

  20. Test load verification through strain data analysis

    NASA Technical Reports Server (NTRS)

    Verderaime, V.; Harrington, F.

    1995-01-01

    A traditional binding acceptance criterion on polycrystalline structures is the experimental verification of the ultimate factor of safety. At fracture, the induced strain is inelastic and about an order-of-magnitude greater than designed for maximum expected operational limit. At this extreme strained condition, the structure may rotate and displace at the applied verification load such as to unknowingly distort the load transfer into the static test article. Test may result in erroneously accepting a submarginal design or rejecting a reliable one. A technique was developed to identify, monitor, and assess the load transmission error through two back-to-back surface-measured strain data. The technique is programmed for expediency and convenience. Though the method was developed to support affordable aerostructures, the method is also applicable for most high-performance air and surface transportation structural systems.

  1. Variability among Rhizobium Strains Originating from Nodules of Vicia faba.

    PubMed

    van Berkum, P; Beyene, D; Vera, F T; Keyser, H H

    1995-07-01

    Rhizobium strains from nodules of Vicia faba were diverse in plasmid content and serology. Results of multilocus gel electrophoresis and restriction fragment length polymorphism indicated several deep chromosomal lineages among the strains. Linkage disequilibrium among the chromosomal types was detected and may have reflected variation of Rhizobium strains in the different geographical locations from which the strains originated. An investigation of pea strains with antibodies prepared against fava bean strains and restriction fragment length polymorphism analyses, targeting DNA regions coding for rRNA and nodulation, indicated that Rhizobium strains from V. faba nodules were distinguishable from those from Pisum sativum, V. villosa, and Trifolium spp. PMID:16535075

  2. Path dependent high strain, strain-rate deformation of polymer toroidal elements

    NASA Astrophysics Data System (ADS)

    Lee, Chien-Wei; Nesterenko, Vitali F.

    2014-08-01

    The dynamic behavior of toroidal elements (o-rings) is investigated at the range of global engineering strains up to 0.7 and strain rates about 100 s-1. It was observed that the corresponding average dynamic stiffness of rubber toroidal elements increases up to 3 times in comparison with their quasistatic compression. The viscoelastic dynamic model using linear strain-rate dependence and Hertz damped model did not satisfactory agree with experimental data in investigated range of strains and strain-rates. In order to reflect experimental results, a modified viscoelastic model with power-law strain-rate dependence was proposed. Path dependent deformation of o-rings with different levels of pre-compression was investigated under dynamic loading conditions. It was found that dynamic response of pre-compressed o-rings at the initial strain range of 0.04-0.25 is similar to the behavior of uncompressed o-rings, but further increasing pre-compression to 0.4 and 0.5 results in different force-strain curves demonstrating memory effect. This phenomenon is explained using a model incorporating dependence of dynamic force on initial pre-compression introducing critical level of dynamic strain, after which memory of initial pre-compression fades. This model predicts that force history of weakly compressed o-rings (initial strain 4%) on the stage of loading represents an envelope for all other data in agreement with experiments. In all cases, the dynamic behavior was characterized by stiffer force-displacement curves in comparison with quasistatic compression of o-rings.

  3. Ultrasound strain mapping of Achilles tendon compressive strain patterns during dorsiflexion.

    PubMed

    Chimenti, Ruth L; Flemister, A Samuel; Ketz, John; Bucklin, Mary; Buckley, Mark R; Richards, Michael S

    2016-01-01

    Heel lifts are commonly prescribed to patients with Achilles tendinopathy, yet little is known about the effect on tendon compressive strain. The purposes of the current study were to (1) develop a valid and reliable ultrasound elastography technique and algorithm to measure compressive strain of human Achilles tendon in vivo, (2) examine the effects of ankle dorsiflexion (lowering via controlled removal of a heel lift and partial squat) on compressive strain of the Achilles tendon insertion and (3) examine the relative compressive strain between the deep and superficial regions of the Achilles tendon insertion. All tasks started in a position equivalent to standing with a 30mm heel lift. An ultrasound transducer positioned over the Achilles tendon insertion was used to capture radiofrequency images. A non-rigid image registration-based algorithm was used to estimate compressive strain of the tendon, which was divided into 2 regions (superficial, deep). The bland-Altman test and intraclass correlation coefficient were used to test validity and reliability. One-way repeated measures ANOVA was used to compare compressive strain between regions and across tasks. Compressive strain was accurately and reliably (ICC>0.75) quantified. There was greater compressive strain during the combined task of lowering and partial squat compared to the lowering (P=.001) and partial squat (P<.001) tasks separately. There was greater compressive strain in the deep region of the tendon compared to the superficial for all tasks (P=.001). While these findings need to be examined in a pathological population, heel lifts may reduce tendon compressive strain during daily activities. PMID:26655590

  4. Cyclomodulins in Urosepsis Strains of Escherichia coli▿

    PubMed Central

    Dubois, Damien; Delmas, Julien; Cady, Anne; Robin, Frédéric; Sivignon, Adeline; Oswald, Eric; Bonnet, Richard

    2010-01-01

    Determinants of urosepsis in Escherichia coli remain incompletely defined. Cyclomodulins (CMs) are a growing functional family of toxins that hijack the eukaryotic cell cycle. Four cyclomodulin types are actually known in E. coli: cytotoxic necrotizing factors (CNFs), cycle-inhibiting factor (Cif), cytolethal distending toxins (CDTs), and the pks-encoded toxin. In the present study, the distribution of CM-encoding genes and the functionality of these toxins were investigated in 197 E. coli strains isolated from patients with community-acquired urosepsis (n = 146) and from uninfected subjects (n = 51). This distribution was analyzed in relation to the phylogenetic background, clinical origin, and antibiotic resistance of the strains. It emerged from this study that strains harboring the pks island and the cnf1 gene (i) were strongly associated with the B2 phylogroup (P, <0.001), (ii) frequently harbored both toxin-encoded genes in phylogroup B2 (33%), and (iii) were predictive of a urosepsis origin (P, <0.001 to 0.005). However, the prevalences of the pks island among phylogroup B2 strains, in contrast to those of the cnf1 gene, were not significantly different between fecal and urosepsis groups, suggesting that the pks island is more important for the colonization process and the cnf1 gene for virulence. pks- or cnf1-harboring strains were significantly associated with susceptibility to antibiotics (amoxicillin, cotrimoxazole, and quinolones [P, <0.001 to 0.043]). Otherwise, only 6% and 1% of all strains harbored the cdtB and cif genes, respectively, with no particular distribution by phylogenetic background, antimicrobial susceptibility, or clinical origin. PMID:20375237

  5. Strain energy harvesting for wireless sensor networks

    NASA Astrophysics Data System (ADS)

    Churchill, David L.; Hamel, Michael J.; Townsend, Christopher P.; Arms, Steven W.

    2003-07-01

    Our goal was to demonstrate a robust strain energy harvesting system for powering an embedded wireless sensor network without batteries. A composite material specimen was laminated with unidirectional aligned piezoelectric fibers (PZT5A, 250 um, overall 13x10x.38 mm). The fibers were embedded within a resin matrix for damage tolerance (Advanced Cerametrics, Lambertville, NJ). A foil strain gauge (Micro-Measurements, Raleigh, NC) was bonded to the piezoelectric fiber and shunt calibrated. The specimen was loaded in three point cyclic bending (75 to 300 μɛ peak) using an electrodynamic actuator operating at 60,120, and 180 Hz. Strain energy was stored by rectifying piezoelectric fiber output into a capacitor bank. When the capacitor voltage reached a preset threshold, charge was transferred to an integrated, embeddable wireless sensor node (StrainLink, MicroStrain, Inc., Williston, VT). Nodes include: 16 bit A/D converter w/programmable gain and filter, 5 single ended or 3 differential sensor inputs, microcontroller w/16 bit address, on-board EEPROM, and 418 MHz FSK RF transmitter. Transmission range was 1/3 mile (LOS, 1/4 wavelength antennas, 12 milliamps at +3 VDC). The RF receiver included EEPROM, XML output, and Ethernet connectivity. Received data from network nodes are parsed according to their individual addresses. The times required to accumulate sufficient charge to accomplish data transmission was evaluated. For peak strains of 150 μɛ, the time to transmit was 30 to 160 seconds (for 180 to 60 Hz tests).

  6. Modeling Strains Associated with Fluid Extraction

    NASA Astrophysics Data System (ADS)

    Barbour, A. J.; Agnew, D. C.; Wyatt, F. K.

    2013-12-01

    A class of strain signals found in data from a number of borehole strainmeters in the Plate Boundary Observatory network is believed to be associated with pumping of nearby water wells. In order to test the connection between fluid extraction and deformation, we have collected a multi- year record of the pump activity at two actively-pumped wells near the pair of strainmeters at the Pathfinder Ranch, a summer camp located in the Garner Valley in southern California. The data we have collected indicate strong correlations between (1) times of fluid extraction and the onset of significant strain and pore-fluid pressure changes, and (2) cumulative extraction volumes and the sizes of the pressure and strain perturbations. In order to model these observations, we use a sum of K autoregressive models to create a statistical description of the effect, and a poroelastic model to create a physical description. We show that for K = 2 the mixture model adequately preserves both long- and short-term effects, and can be used to construct a ';correction series' from the binary pumping series in a numerically efficient manner. Spatiotemporal strain and pore- fluid pressure fields associated with episodes of fluid extraction are simulated in a layered, radially extensive poroelastic medium. Based on the interpretations of our parameter exploration, the simplest model which fits the observed strains and pressures is a two layer model where rigid bedrock having relatively high diffusivity is overlain by roughly 100 meters of alluvium having slightly higher diffusivity and behaving as an unconfined aquifer system. The lack of a strong contrast in diffusivity between lithologic units suggests that the bedrock material has a relatively high density of hydraulically conductive fractures; borehole logging data and drillers' logs corroborate this. Further, the requirement that both layers have high conductivity helps explain the relatively low sensitivity of the aquifer system to dynamic

  7. Episodic strain accumulation in southern california.

    PubMed

    Thatcher, W

    1976-11-12

    Reexamination of horizontal geodetic data in the region of recently discovered aseismic uplift has demonstrated that equally unusual horizontal crustal deformation accompanied the development of the uplift. During this time interval compressive strains were oriented roughly normal to the San Andreas fault, suggesting that the uplift produced little shear strain accumulation across this fault. On the other hand, the orientation of the anomalous shear straining is consistent with strain accumulation across northdipping range-front thrusts like the San Fernando fault. Accordingly, the horizontal and vertical crustal deformation disclosed by geodetic observation is interpreted as a short epoch of rapid strain accumulation on these frontal faults. If this interpretation is correct, thrust-type earthquakes will eventually release the accumulated strains, but the geodetic data examined here cannot be used to estimate when these events might occur. However, observation of an unusual sequence of tilts prior to 1971 on a level line lying to the north of the magnitude 6.4 San Fernando earthquake offers some promise for precursor monitoring. The data are adequately explained by a simple model of up-dip aseismic slip propagation toward the 1971 epicentral region. These observations and the simple model that accounts for them suggest a conceptually straightforward monitoring scheme to search for similar uplift and tilt precursors within the uplifted region. Such premonitory effects could be detected by a combination of frequenlty repeated short (30 to 70 km in length) level line measurements, precise gravity traverses, and continuously recording gravimeters sited to the north of the active frontal thrust faults. Once identified, such precursors could be closely followed in space and time, and might then provide effective warnings of impending potentially destructive earth-quakes. PMID:17832524

  8. Comparison of barley stripe mosaic virus strains.

    PubMed

    Hafez, Elsayed E; Abdel Aleem, Engy E; Fattouh, Faiza A

    2008-01-01

    BSMV (barley stripe mosaic virus) particles were obtained in a pure state from infected host plant tissues of Hordeum vulgare. The three genomic parities (alpha, beta and gamma) were amplified by PCR using specific primers for each particle; each was cloned. Partial sequence of the alpha, beta and gamma segments was determined for the Egyptian isolate of barley stripe mosaic virus (BSMV AE1). Alignment of nucleotide sequences with that of other known strains of the virus, BSMV type strains (CV17, ND18 and China), and the generation of phylogenetic trees was performed. A low level of homology was detected comparing 467 bp of the a and 643 bp of the segments to that of the other strains, and thus BSMV alpha and beta segments were in separate clusters. However, 1154 bp of the gamma segments of BSMV AE1 showed a high level of homology especially to strain BSMV ND18, as they both formed a distinct cluster. Northern blotting of pure BSMV AE1 virus and H. vulgare-infected tissue were compared using an alpha ND18 specific probe. Western blotting using antibodies specific for the coat protein (CP) and the triple gene block 1 (TGB1) protein, which are both encoded by the beta ND18 segment, still indicated a high level of similarity between proteins produced by BSMV ND18 and AE1. We suggest that the BSMV AE1 isolate is a distinct strain of BSMV which reflects the genetic evolutionary divergence among BSMV strains and members of the Hordeivirus group. PMID:18533473

  9. Ecoepidemics with Two Strains: Diseased Prey.

    NASA Astrophysics Data System (ADS)

    Elena, Elisa; Grammauro, Maria; Venturino, Ezio

    2011-09-01

    In this work we present a minimal model for an ecoepidemic situation with two diseases affecting the prey population. The main assumptions are the following ones. The predators recognize and hunt only the healthy prey. An infected prey of one strain becomes immune to the other one. The major finding shows that the two strains cannot simultaneously thrive in the system, contrary to the standard assumptions in epidemiology. But this rather unexpected and remarkable result, paralleling another one when the epidemics affects the predators, is most likely due to the assumptions made.

  10. Development of inkjet printed strain sensors

    NASA Astrophysics Data System (ADS)

    Correia, V.; Caparros, C.; Casellas, C.; Francesch, L.; Rocha, J. G.; Lanceros-Mendez, S.

    2013-10-01

    Strain sensors with different architectures, such as single sensors, sensor arrays and a sensor matrix have been developed by inkjet printing technology. Sensors with gauge factors up to 2.48, dimensions of 1.5 mm × 1.8 mm and interdigitated structures with a distance of 30 μm between the finger lines have been achieved based on PeDOT (poly(3,4-ethylenedioxythiophene) and conductive ink. Strain gauges based on silver ink have also been achieved with a gauge factor of 0.35. Performance tests including 1000 mechanical cycles have been successfully carried out for the development of smart prosthesis applications.

  11. Progress in speckle-shift strain measurement

    NASA Technical Reports Server (NTRS)

    Lant, Christian T.; Barranger, John P.; Oberle, Lawrence G.; Greer, Lawrence C., III

    1991-01-01

    The Instrumentation and Control Technology Division of the Lewis Research Center has been developing an in-house capability to make one dimensional and two dimensional optical strain measurements on high temperature test specimens. The measurements are based on a two-beam speckle-shift technique. The development of composite materials for use in high temperature applications is generating interest in using the speckle-shift technique to measure strains on small diameter fibers and wires of various compositions. The results of preliminary speckle correlation tests on wire and fiber specimens are covered, and the advanced system currently under development is described.

  12. Vortex induced strain effects in anisotropic superconductors

    SciTech Connect

    Miranovic, P.; Dobrosavljevic-Grujic, L.; Kogan, V.G.

    1996-12-31

    Strain in a superconductor, produced by the normal vortex core, can affect both static and dynamic properties of vortices. It causes an additional vortex-vortex interaction which is long-ranged ({approximately} 1/r{sup 2}) as compared with finite but much stronger London interaction in the fields far below H{sub c2}. The energy of this magneto-elastic interaction is calculated within London model. The role of strain effects in forming vortex lattice structure is demonstrated for YBa{sub 2}Cu{sub 3}O{sub 7}.

  13. Tensile strain mapping in flat germanium membranes

    SciTech Connect

    Rhead, S. D. Halpin, J. E.; Myronov, M.; Patchett, D. H.; Allred, P. S.; Wilson, N. R.; Leadley, D. R.; Shah, V. A.; Kachkanov, V.; Dolbnya, I. P.; Reparaz, J. S.; Sotomayor Torres, C. M.

    2014-04-28

    Scanning X-ray micro-diffraction has been used as a non-destructive probe of the local crystalline quality of a thin suspended germanium (Ge) membrane. A series of reciprocal space maps were obtained with ∼4 μm spatial resolution, from which detailed information on the strain distribution, thickness, and crystalline tilt of the membrane was obtained. We are able to detect a systematic strain variation across the membranes, but show that this is negligible in the context of using the membranes as platforms for further growth. In addition, we show evidence that the interface and surface quality is improved by suspending the Ge.

  14. Cells as strain-cued automata

    NASA Astrophysics Data System (ADS)

    Cox, Brian N.; Snead, Malcolm L.

    2016-02-01

    We argue in favor of representing living cells as automata and review demonstrations that autonomous cells can form patterns by responding to local variations in the strain fields that arise from their individual or collective motions. An autonomous cell's response to strain stimuli is assumed to be effected by internally-generated, internally-powered forces, which generally move the cell in directions other than those implied by external energy gradients. Evidence of cells acting as strain-cued automata have been inferred from patterns observed in nature and from experiments conducted in vitro. Simulations that mimic particular cases of pattern forming share the idealization that cells are assumed to pass information among themselves solely via mechanical boundary conditions, i.e., the tractions and displacements present at their membranes. This assumption opens three mechanisms for pattern formation in large cell populations: wavelike behavior, kinematic feedback in cell motility that can lead to sliding and rotational patterns, and directed migration during invasions. Wavelike behavior among ameloblast cells during amelogenesis (the formation of dental enamel) has been inferred from enamel microstructure, while strain waves in populations of epithelial cells have been observed in vitro. One hypothesized kinematic feedback mechanism, "enhanced shear motility", accounts successfully for the spontaneous formation of layered patterns during amelogenesis in the mouse incisor. Directed migration is exemplified by a theory of invader cells that sense and respond to the strains they themselves create in the host population as they invade it: analysis shows that the strain fields contain positional information that could aid the formation of cell network structures, stabilizing the slender geometry of branches and helping govern the frequency of branch bifurcation and branch coalescence (the formation of closed networks). In simulations of pattern formation in

  15. Development of high temperature strain gages

    NASA Technical Reports Server (NTRS)

    Lemcoe, M. M.

    1973-01-01

    High temperature electric resistance wire strain gages were developed and evaluated for use at temperatures exceeding 922 K (1200 F). A special high temperature strain gage alloy (Fe-25Cr-7.5A1), designated BCL-3, was used to fabricate the gages. Pertinent gage characteristics were determined at temperatures up to 1255 K (1800 F). The results of the evaluation were reported in graphical and tabular form. It was concluded that the gages will perform satisfactorily at temperatures to at least 1089 K (1500 F) for at least one hour.

  16. Multiple Rescue Factors Within a Wolbachia Strain

    PubMed Central

    Zabalou, Sofia; Apostolaki, Angeliki; Pattas, Savvas; Veneti, Zoe; Paraskevopoulos, Charalampos; Livadaras, Ioannis; Markakis, George; Brissac, Terry; Merçot, Hervé; Bourtzis, Kostas

    2008-01-01

    Wolbachia-induced cytoplasmic incompatibility (CI) is expressed when infected males are crossed with either uninfected females or females infected with Wolbachia of different CI specificity. In diploid insects, CI results in embryonic mortality, apparently due to the the loss of the paternal set of chromosomes, usually during the first mitotic division. The molecular basis of CI has not been determined yet; however, several lines of evidence suggest that Wolbachia exhibits two distinct sex-dependent functions: in males, Wolbachia somehow “imprints” the paternal chromosomes during spermatogenesis (mod function), whereas in females, the presence of the same Wolbachia strain(s) is able to restore embryonic viability (resc function). On the basis of the ability of Wolbachia to induce the modification and/or rescue functions in a given host, each bacterial strain can be classified as belonging in one of the four following categories: mod+ resc+, mod− resc+, mod− resc−, and mod+ resc−. A so-called “suicide” mod+ resc− strain has not been found in nature yet. Here, a combination of embryonic cytoplasmic injections and introgression experiments was used to transfer nine evolutionary, distantly related Wolbachia strains (wYak, wTei, wSan, wRi, wMel, wHa, wAu, wNo, and wMa) into the same host background, that of Drosophila simulans (STCP strain), a highly permissive host for CI expression. We initially characterized the modification and rescue properties of the Wolbachia strains wYak, wTei, and wSan, naturally present in the yakuba complex, upon their transfer into D. simulans. Confocal microscopy and multilocus sequencing typing (MLST) analysis were also employed for the evaluation of the CI properties. We also tested the compatibility relationships of wYak, wTei, and wSan with all other Wolbachia infections. So far, the cytoplasmic incompatibility properties of different Wolbachia variants are explained assuming a single pair of modification and rescue

  17. Exciton effects in strained armchair graphene nanoribbons

    NASA Astrophysics Data System (ADS)

    Jia, Yonglei; Liu, Junlin

    2016-01-01

    The exciton effects in 1-nm-wide armchair graphene nanoribbons (AGNRs) under the uniaxial strain were studied within the nonorthogonal tight-binding (TB) model, supplemented by the long-range Coulomb interactions. The obtained results show that both the excitation energy and exciton binding energy are modulated by the uniaxial strain. The variation of these energies depends on the ribbon family. In addition, the results show that the variation of the exciton binding energy is much weaker than the variation of excitation energy. Our results provide new guidance for the design of optomechanical systems based on graphene nanoribbons.

  18. Shear-strain contours from moire interferometry

    NASA Technical Reports Server (NTRS)

    Post, D.; Czarnek, R.; Joh, D.

    1985-01-01

    The development of whole-field contour maps of shear strains gamma (xy), derived from displacement fields obtained by moire interferometry with 2400 lines/mm, is described. The use of mechanical differentiation to obtain cross-derivatives of displacements and the use of graphical additive moire to sum the cross-derivatives are explained. Quantitative analysis in the small-strain domain is possible because of the high sensitivity of moire interferometry. The applicability of this technique is shown by the testing of a short epoxy beam under three-point bending.

  19. NASTRAN modifications for recovering strains and curvatures

    NASA Technical Reports Server (NTRS)

    Hennrich, C. W.

    1975-01-01

    Modifications to the NASTRAN structural analysis computer program are described. The modifications allow the recovery of strain and curvature data for the general two-dimensional elements, in addition to the usual stress data. Option features allow the transformation of the strain/curvature (or stress) data to a common coordinate system and representation at the grid points of the structural model rather than at the conventional element center locations. Usage information is provided which will allow present users of NASTRAN to easily utilize the new capability.

  20. Chitosan-Polypyrrole Fiber for Strain Sensor.

    PubMed

    Lee, Songjun; Yi, Byung-Ju; Chun, Kyoung-Yong; Lee, Jaeah; Kim, Youn Tae; Cha, Eun-Jong; Kim, Seon Jeong

    2015-03-01

    A chitosan/polypyrrole composited fiber as bio-compatible materials for artificial muscles is investigated. The chitosan/polypyrrole fiber (CPF) is fabricated by in-situ chemical polymerization of pyrrole monomer solution using FeCl3 as an oxidant. The electrical resistivity of the fiber is changed according to the strain variation applied to the both ends of the specimen. The sensor built by using the CPF has a higher gauge factor (4) compared to conventional metal strain gauges (~2) indicating a suitable material for delicate force control in sensing work. PMID:26413701

  1. Two-Dimensional Laser-Speckle Surface-Strain Gauge

    NASA Technical Reports Server (NTRS)

    Barranger, John P.; Lant, Christian

    1992-01-01

    Extension of Yamaguchi's laser-speckle surface-strain-gauge method yields data on two-dimensional surface strains in times as short as fractions of second. Laser beams probe rough spot on surface of specimen before and after processing. Changes in speckle pattern of laser light reflected from spot indicative of changes in surface strains during processing. Used to monitor strains and changes in strains induced by hot-forming and subsequent cooling of steel.

  2. Multiple Comparison Analysis of Two New Genomic Sequences of ILTV Strains from China with Other Strains from Different Geographic Regions

    PubMed Central

    Zhao, Yan; Kong, Congcong; Wang, Yunfeng

    2015-01-01

    To date, twenty complete genome sequences of ILTV strains have been published in GenBank, including one strain from China, and nineteen strains from Australian and the United States. To investigate the genomic information on ILTVs from different geographic regions, two additional individual complete genome sequences of WG and K317 strains from China were determined. The genomes of WG and K317 strains were 153,505 and 153,639 bp in length, respectively. Alignments performed on the amino acid sequences of the twelve glycoproteins showed that 13 out of 116 mutational sites were present only among the Chinese strain WG and the Australian strains SA2 and A20. The phylogenetic tree analysis suggested that the WG strain established close relationships with the Australian strain SA2. The recombination events were detected and confirmed in different subregions of the WG strain with the sequences of SA2 and K317 strains as parental. In this study, two new complete genome sequences of Chinese ILTV strains were used in comparative analysis with other complete genome sequences of ILTV strains from China, the United States, and Australia. The analysis of genome comparison, phylogenetic trees, and recombination events showed close relationships among the Chinese strain WG and the Australian strains SA2. The information of the two new complete genome sequences from China will help to facilitate the analysis of phylogenetic relationships and the molecular differences among ILTV strains from different geographic regions. PMID:26186451

  3. Multiple Comparison Analysis of Two New Genomic Sequences of ILTV Strains from China with Other Strains from Different Geographic Regions.

    PubMed

    Zhao, Yan; Kong, Congcong; Wang, Yunfeng

    2015-01-01

    To date, twenty complete genome sequences of ILTV strains have been published in GenBank, including one strain from China, and nineteen strains from Australian and the United States. To investigate the genomic information on ILTVs from different geographic regions, two additional individual complete genome sequences of WG and K317 strains from China were determined. The genomes of WG and K317 strains were 153,505 and 153,639 bp in length, respectively. Alignments performed on the amino acid sequences of the twelve glycoproteins showed that 13 out of 116 mutational sites were present only among the Chinese strain WG and the Australian strains SA2 and A20. The phylogenetic tree analysis suggested that the WG strain established close relationships with the Australian strain SA2. The recombination events were detected and confirmed in different subregions of the WG strain with the sequences of SA2 and K317 strains as parental. In this study, two new complete genome sequences of Chinese ILTV strains were used in comparative analysis with other complete genome sequences of ILTV strains from China, the United States, and Australia. The analysis of genome comparison, phylogenetic trees, and recombination events showed close relationships among the Chinese strain WG and the Australian strains SA2. The information of the two new complete genome sequences from China will help to facilitate the analysis of phylogenetic relationships and the molecular differences among ILTV strains from different geographic regions. PMID:26186451

  4. Revisiting borehole strain, typhoons, and slow earthquakes using quantitative estimates of precipitation-induced strain changes

    NASA Astrophysics Data System (ADS)

    Hsu, Ya-Ju; Chang, Yuan-Shu; Liu, Chi-Ching; Lee, Hsin-Ming; Linde, Alan T.; Sacks, Selwyn I.; Kitagawa, Genshio; Chen, Yue-Gau

    2015-06-01

    Taiwan experiences high deformation rates, particularly along its eastern margin where a shortening rate of about 30 mm/yr is experienced in the Longitudinal Valley and the Coastal Range. Four Sacks-Evertson borehole strainmeters have been installed in this area since 2003. Liu et al. (2009) proposed that a number of strain transient events, primarily coincident with low-barometric pressure during passages of typhoons, were due to deep-triggered slow slip. Here we extend that investigation with a quantitative analysis of the strain responses to precipitation as well as barometric pressure and the Earth tides in order to isolate tectonic source effects. Estimates of the strain responses to barometric pressure and groundwater level changes for the different stations vary over the ranges -1 to -3 nanostrain/millibar(hPa) and -0.3 to -1.0 nanostrain/hPa, respectively, consistent with theoretical values derived using Hooke's law. Liu et al. (2009) noted that during some typhoons, including at least one with very heavy rainfall, the observed strain changes were consistent with only barometric forcing. By considering a more extensive data set, we now find that the strain response to rainfall is about -5.1 nanostrain/hPa. A larger strain response to rainfall compared to that to air pressure and water level may be associated with an additional strain from fluid pressure changes that take place due to infiltration of precipitation. Using a state-space model, we remove the strain response to rainfall, in addition to those due to air pressure changes and the Earth tides, and investigate whether corrected strain changes are related to environmental disturbances or tectonic-original motions. The majority of strain changes attributed to slow earthquakes seem rather to be associated with environmental factors. However, some events show remaining strain changes after all corrections. These events include strain polarity changes during passages of typhoons (a characteristic that is

  5. Probiotic Potential of Lactobacillus Strains with Antimicrobial Activity against Some Human Pathogenic Strains

    PubMed Central

    Shokryazdan, Parisa; Sieo, Chin Chin; Kalavathy, Ramasamy; Liang, Juan Boo; Alitheen, Noorjahan Banu; Faseleh Jahromi, Mohammad; Ho, Yin Wan

    2014-01-01

    The objective of this study was to isolate, identify, and characterize some lactic acid bacterial strains from human milk, infant feces, and fermented grapes and dates, as potential probiotics with antimicrobial activity against some human pathogenic strains. One hundred and forty bacterial strains were isolated and, after initial identification and a preliminary screening for acid and bile tolerance, nine of the best isolates were selected and further identified using 16 S rRNA gene sequences. The nine selected isolates were then characterized in vitro for their probiotic characteristics and their antimicrobial activities against some human pathogens. Results showed that all nine isolates belonged to the genus Lactobacillus. They were able to tolerate pH 3 for 3 h, 0.3% bile salts for 4 h, and 1.9 mg/mL pancreatic enzymes for 3 h. They exhibited good ability to attach to intestinal epithelial cells and were not resistant to the tested antibiotics. They also showed good antimicrobial activities against the tested pathogenic strains of humans, and most of them exhibited stronger antimicrobial activity than the reference strain L. casei Shirota. Thus, the nine Lactobacillus strains could be considered as potential antimicrobial probiotic strains against human pathogens and should be further studied for their human health benefits. PMID:25105147

  6. Probiotic potential of Lactobacillus strains with antimicrobial activity against some human pathogenic strains.

    PubMed

    Shokryazdan, Parisa; Sieo, Chin Chin; Kalavathy, Ramasamy; Liang, Juan Boo; Alitheen, Noorjahan Banu; Faseleh Jahromi, Mohammad; Ho, Yin Wan

    2014-01-01

    The objective of this study was to isolate, identify, and characterize some lactic acid bacterial strains from human milk, infant feces, and fermented grapes and dates, as potential probiotics with antimicrobial activity against some human pathogenic strains. One hundred and forty bacterial strains were isolated and, after initial identification and a preliminary screening for acid and bile tolerance, nine of the best isolates were selected and further identified using 16 S rRNA gene sequences. The nine selected isolates were then characterized in vitro for their probiotic characteristics and their antimicrobial activities against some human pathogens. Results showed that all nine isolates belonged to the genus Lactobacillus. They were able to tolerate pH 3 for 3 h, 0.3% bile salts for 4 h, and 1.9 mg/mL pancreatic enzymes for 3 h. They exhibited good ability to attach to intestinal epithelial cells and were not resistant to the tested antibiotics. They also showed good antimicrobial activities against the tested pathogenic strains of humans, and most of them exhibited stronger antimicrobial activity than the reference strain L. casei Shirota. Thus, the nine Lactobacillus strains could be considered as potential antimicrobial probiotic strains against human pathogens and should be further studied for their human health benefits. PMID:25105147

  7. Mechanical strength model for plastic bonded granular materials at high strain rates and large strains

    SciTech Connect

    Browning, R.V.; Scammon, R.J.

    1997-07-01

    Modeling impact events on systems containing plastic bonded explosive materials requires accurate models for stress evolution at high strain rates out to large strains. For example, in the Steven test geometry reactions occur after strains of 0.5 or more are reached for PBX-950l. The morphology of this class of materials and properties of the constituents are briefly described. We then review the viscoelastic behavior observed at small strains for this class of material, and evaluate large strain models used for granular materials such as cap models. Dilatation under shearing deformations of the PBX is experimentally observed and is one of the key features modeled in cap style plasticity theories, together with bulk plastic flow at high pressures. We propose a model that combines viscoelastic behavior at small strains but adds intergranular stresses at larger strains. A procedure using numerical simulations and comparisons with results from flyer plate tests and low rate uniaxial stress tests is used to develop a rough set of constants for PBX-9501. Comparisons with the high rate flyer plate tests demonstrate the viscoelastic based model show that the observed characteristic behavior is captured by this model.

  8. Perceptual strain index for heat strain assessment in an experimental study: an application to construction workers.

    PubMed

    Yang, Y; Chan, Albert P C

    2015-02-01

    Although the physiological strain index (PhSI) is universal and comprehensive, its restrictions are recognized in terms of invasive on-site measurements and the requirement of accurate instruments. The perceptual strain index (PeSI) has been proposed as a user-friendly and practical indicator for heat strain. However, the application of this index in assessing the heat strain of construction workers has yet to be examined and documented. This study aims to ascertain the reliability and applicability of PeSI in an experimental setting that simulates a stressful working environment (i.e., environment, work uniform, and work pace) experienced by construction workers. Ten males and two females performed intermittent exercise on a treadmill while wearing a summer work uniform at 34.5 °C and 75% relative humidity in a climatic chamber. Physiological parameters (core temperature, heart rate) and perceptual variables (thermal sensation, perceived exertion) were collated synchronously at 3 min intervals. The results of two-way repeated measures analysis of variance (clothing×time) revealed that the PeSI was useful in differentiating the heat strain levels between different work uniforms. Not only did the PeSI change in the same general manner with the PhSI, but it was also powerful in reflecting different levels of physiological strain. Thus, the PeSI offers considerable promise for heat strain assessment under simulated working conditions. PMID:25660626

  9. The apparent strain stability and repeatability of a BCL3 resistance strain gage

    NASA Astrophysics Data System (ADS)

    Lei, Jih-Fen

    1991-02-01

    Experiments were conducted at NASA-Lewis to study the effect of microstructural instability on the apparent strain stability and reproducibility of a BCL3 resistance strain gage. The resistance drift of the gage at various temperatures in the phase transition temperature range (PTTR) was measured. The effects of the heating and cooling rates with which the gage passed through the PTTR on the apparent strain characteristics of the gage were also studied. BCL3 gage, like other Fe-Cr-Al based gages, exhibited apparent strain instability in the temperature range of 700 to 1100 F due to the reversible microstructural transition the gage materials experienced in this temperature range. The BCL3 gage had a maximum apparent strain drift in the neighborhood of 770 F with an average drift rate of approx. -440 microstrain/hr in 2 hrs. The use of the BCL3 gage as well as other Fe-Cl-Al based gages for static strain measurements within the PTTR should be avoided unless the time durations in the PTTR are small enough to introduce a neglible drift. The microstructure transition that the BCL3 gage underwent occurred in the temperature range of 750 to 1050 F during heating and around 1000 to 800 F during cooling. The heating rate, and, in particular, the cooling rate with which the gage passed through the PTTR affected the shape and the repeatability of the apparent strain curve of the gage.

  10. Mechanical strength model for plastic bonded granular materials at high strain rates and large strains

    SciTech Connect

    Browning, R.V.; Scammon, R.J.

    1998-07-01

    Modeling impact events on systems containing plastic bonded explosive materials requires accurate models for stress evolution at high strain rates out to large strains. For example, in the Steven test geometry reactions occur after strains of 0.5 or more are reached for PBX-9501. The morphology of this class of materials and properties of the constituents are briefly described. We then review the viscoelastic behavior observed at small strains for this class of material, and evaluate large strain models used for granular materials such as cap models. Dilatation under shearing deformations of the PBX is experimentally observed and is one of the key features modeled in cap style plasticity theories, together with bulk plastic flow at high pressures. We propose a model that combines viscoelastic behavior at small strains but adds intergranular stresses at larger strains. A procedure using numerical simulations and comparisons with results from flyer plate tests and low rate uniaxial stress tests is used to develop a rough set of constants for PBX-9501. Comparisons with the high rate flyer plate tests demonstrate that the observed characteristic behavior is captured by this viscoelastic based model. {copyright} {ital 1998 American Institute of Physics.}

  11. Strain Hardening and Strain Softening of Reversibly Cross-linked Supramolecular Polymer Networks

    PubMed Central

    Xu, Donghua; Craig, Stephen L.

    2011-01-01

    The large amplitude oscillatory shear behavior of metallo-supramolecular polymer networks formed by adding bis-Pd(II) cross-linkers to poly(4-vinylpyridine) (PVP) in dimethyl sulfoxide (DMSO) solution is reported. The influence of scanning frequency, dissociation rate of cross-linkers, concentration of cross-linkers, and concentration of PVP solution on the large amplitude oscillatory shear behavior is explored. In semidilute unentangled PVP solutions, above a critical scanning frequency, strain hardening of both storage moduli and loss moduli is observed. In the semidilute entangled regime of PVP solution, however, strain softening is observed for samples with faster cross-linkers (kd ∼ 1450 s−1), whereas strain hardening is observed for samples with slower cross-linkers (kd ∼ 17 s−1). The mechanism of strain hardening is attributed primarily to a strain-induced increase in the number of elastically active chains, with possible contributions from non-Gaussian stretching of polymer chains at strains approaching network fracture. The divergent strain softening of samples with faster cross-linkers in semidilute entangled PVP solutions, relative to the strain hardening of samples with slower cross-linkers, is consistent with observed shear thinning/shear thickening behavior reported previously and is attributed to the fact that the average time that a cross-linker remains detached is too short to permit the local relaxation of polymer chain segments that is necessary for a net conversion of elastically inactive to elastically active cross-linkers. These and other observations paint a picture in which strain softening and shear thinning arise from the same set of molecular mechanisms, conceptually uniting the two nonlinear responses for this system. PMID:22043083

  12. Network of flexible capacitive strain gauges for the reconstruction of surface strain

    NASA Astrophysics Data System (ADS)

    Wu, Jingzhe; Song, Chunhui; Saleem, Hussam S.; Downey, Austin; Laflamme, Simon

    2015-05-01

    Monitoring of surface strain on mesosurfaces is a difficult task, often impeded by the lack of scalability of conventional sensing systems. A solution is to deploy large networks of flexible strain gauges, a type of large area electronics. The authors have recently proposed a soft elastomeric capacitor (SEC) as an economical skin-type solution for large-scale deployment onto mesosurfaces. The sensing principle is based on a measurable change in the sensor’s capacitance upon strain. In this paper, we study the performance of the sensor at reconstructing surface strain map and deflection shapes. A particular feature of the sensor is that it measures surface strain additively, because it is not utilized within a Wheatstone bridge configuration. An algorithm is proposed to decompose the additive in-plane strain measurements from the SEC into principal components. The algorithm consists of assuming a polynomial shape function, and deriving the strain based on Kirchhoff plate theory. A least-squares estimator (LSE) is used to minimize the error between the assumed model and the SEC signals after the enforcement of boundary conditions. Numerical simulations are conducted on a symmetric rectangular cantilever thin plate under symmetric and asymmetric static loads to demonstrate the accuracy and real-time applicability of the algorithm. The performance of the algorithm is further examined on an asymmetric cantilever laminated thin plate constituted with orthotropic materials mimicking a wind turbine blade, and subjected to a non-stationary wind load. Results from simulations show good performance of the algorithm at reconstructing the surface strain maps for both in-plane principal strain components, and that it can be applied in real time. However, its performance can be improved by strengthening assumptions on boundary conditions. The algorithm exhibits robustness in performance with respect to load and noise in signals, except when most of the sensors’ signals are

  13. Attaching strain gages by ultrasonic plastic welding

    NASA Technical Reports Server (NTRS)

    Sheppard, A. T.; Silbert, L.

    1977-01-01

    Technique employs application of pressure and ultrasound to effect welding of encapsulated strain gates to metallic surfaces. Process requires no heat or adhesives. Technique might also be used to simplify curing of epoxy adhesives and for attachment problems like bonding cryogenic temperature sensors to structural parts.

  14. Strain rate behavior of magnetorheological materials

    NASA Astrophysics Data System (ADS)

    Seminuk, Kenneth; Joshi, Vasant; Gump, Jared; Stoltz, Chad; Forbes, Jerry

    2014-05-01

    Strain rate response of two Hydroxyl-terminated Polybutadiene/ Iron (HTPB/Fe) compositions under electromagnetic fields has been investigated using a Split Hopkinson Pressure bar arrangement equipped with aluminum bars. Two HTPB/Fe compositions were developed, the first without plasticizer and the second containing plasticizer. Samples were tested with and without the application of a 0.01 Tesla magnetic field. Strain gauge data taken from the Split Hopkinson Pressure Bar has been used to determine the extent of change in mechanical properties by inducing a mild electromagnetic field onto each sample. Raw data from strain gages was processed using commercial software (Signo) and Excel spreadsheet. It is of particular interest to determine whether the mechanical properties of binder systems can be manipulated by adding ferrous or Magnetostrictive particulates. Data collected from the Split Hopkinson Pressure bar indicate changes in the Mechanical Stress-Strain curves and suggest that the impedance of a binder system can be altered by means of a magnetic field.

  15. Strain engineering of Dirac cones in graphyne

    SciTech Connect

    Wang, Gaoxue; Kumar, Ashok; Pandey, Ravindra; Si, Mingsu

    2014-05-26

    6,6,12-graphyne, one of the two-dimensional carbon allotropes with the rectangular lattice structure, has two kinds of non-equivalent anisotropic Dirac cones in the first Brillouin zone. We show that Dirac cones can be tuned independently by the uniaxial compressive strain applied to graphyne, which induces n-type and p-type self-doping effect, by shifting the energy of the Dirac cones in the opposite directions. On the other hand, application of the tensile strain results into a transition from gapless to finite gap system for the monolayer. For the AB-stacked bilayer, the results predict tunability of Dirac-cones by in-plane strains as well as the strain applied perpendicular to the plane. The group velocities of the Dirac cones show enhancement in the resistance anisotropy for bilayer relative to the case of monolayer. Such tunable and direction-dependent electronic properties predicted for 6,6,12-graphyne make it to be competitive for the next-generation electronic devices at nanoscale.

  16. High strain rate behaviour of polypropylene microfoams

    NASA Astrophysics Data System (ADS)

    Gómez-del Río, T.; Garrido, M. A.; Rodríguez, J.; Arencón, D.; Martínez, A. B.

    2012-08-01

    Microcellular materials such as polypropylene foams are often used in protective applications and passive safety for packaging (electronic components, aeronautical structures, food, etc.) or personal safety (helmets, knee-pads, etc.). In such applications the foams which are used are often designed to absorb the maximum energy and are generally subjected to severe loadings involving high strain rates. The manufacture process to obtain polymeric microcellular foams is based on the polymer saturation with a supercritical gas, at high temperature and pressure. This method presents several advantages over the conventional injection moulding techniques which make it industrially feasible. However, the effect of processing conditions such as blowing agent, concentration and microfoaming time and/or temperature on the microstructure of the resulting microcellular polymer (density, cell size and geometry) is not yet set up. The compressive mechanical behaviour of several microcellular polypropylene foams has been investigated over a wide range of strain rates (0.001 to 3000 s-1) in order to show the effects of the processing parameters and strain rate on the mechanical properties. High strain rate tests were performed using a Split Hopkinson Pressure Bar apparatus (SHPB). Polypropylene and polyethylene-ethylene block copolymer foams of various densities were considered.

  17. Strain Analysis of the de Mattia Test

    NASA Astrophysics Data System (ADS)

    Feichter, C.; Vezer, S.; Reiter, M.; Major, Z.

    2010-06-01

    The de Mattia test is a well-known, standardized and widely used method in the rubber industry for characterizing the fatigue behaviour of rubbers. Due to the visual observation and classification of the crack initiated, high data scatter were usually observed in these tests. To improve the quality of the de Mattia test and to support the applicability of the test method in modern design procedures, two novel experimental methods were proposed. Full-field strain analysis experiments using digital image correlation technique were performed and the local strains at the notch tip determined in the first. A global displacement vs. local strain calibration curves makes the design and conduction of strain based Wöhler curves possible. The crack initiation and crack growth is detected by an image analysis system and the crack growth rate was determined in the second method. To gain more insight into the fatigue behaviour of rubbers, these two novel methods were combined and can efficiently be used for characterizing the fatigue behaviour of rubbers.

  18. High temperature static strain sensor development program

    NASA Technical Reports Server (NTRS)

    Hulse, C.; Lemkey, F.; Bailey, R.; Grant, H.

    1982-01-01

    The development of resistance strain gages which are useful for static strain measurements on nickel or cobalt superalloy parts inside a gas turbine engine on a test stand were examined. These measurements of a strain gage alloy development program which to be followed by an optional investigation of complete strain gage systems which will use the best of the alloys developed together with other system improvements is reviewed. The specific goal for the complete system is to make measurements to 2,000 micro epsilon with error of only + or - 10% over a 50 hour period. In addition to simple survival and stability, attaining a low thermal coefficient to resistivity, of order 100 ppm/K or less, is also a major goal. The first task was to select candidate alloys or alloy systems using a search of the literature and the available metallurgical theory. Alloy candidates were evaluated and compared by a grading system. Equipment and techniques were developed which are suitable for iterative studies of a variety of compositions. Many compositions were examined and significantly improved alloys were identified.

  19. [Progress on engineered strains for ethanol production].

    PubMed

    Wang, Fan-qiang; Xu, Ping

    2006-08-01

    With the 21 century's coming, the era of cheap oil is coming to the end. There has been an increasing worldwide interest in fuel ethanol. In the last two decades, lots of work has been done to develop strains for ethanol producing. Research progress on metabolic engineering of strains for fuel ethanol production is summarized, including genetically engineered Saccharomyces cerevisiae to utilize starch, pentose and cellulose, Zymomonas mobilis to ferment arabinose and xylose, Escherichia coli and Klebsiella oxytoca to introduce heterogenous ethanol production pathway. The aim of engineering these strains is to obtain an ideal microorganism which can converse the available carbon sources to ethanol rapidly and efficiently with high tolerance to ethanol and to inhibitory components in the cheap materials such as lignocellulose hydrolysate. The importance of fuel ethanol will be a stimulus to develop engineered hardy strains to utilize cheap materials for high ethanol concentration production. Since both Saccharomyces cerevisiae and Zymomonas mobilis are generally regarded as safe (GRAS), genetically engineered Saccharomyces cerevisiae which can utilize raw starch directly and recombinant Zymomonas mobilis which can ferment glucose, arabinose and xylose in the lignocellulose hydrolysate have potential application to industry in the near future. PMID:17037078

  20. Superconducting wire with improved strain characteristics

    DOEpatents

    Luhman, Thomas; Klamut, Carl J.; Suenaga, Masaki; Welch, David

    1982-01-01

    A superconducting wire comprising a superconducting filament and a beryllium strengthened bronze matrix in which the addition of beryllium to the matrix permits a low volume matrix to exhibit reduced elastic deformation after heat treating which increases the compression of the superconducting filament on cooling and thereby improves the strain characteristics of the wire.

  1. Superconducting wire with improved strain characteristics

    DOEpatents

    Luhman, T.; Klamut, C.J.; Suenaga, M.; Welch, D.

    1979-12-19

    A superconducting wire comprising a superconducting filament and a beryllium strengthened bronze matrix in which the addition of beryllium to the matrix permits a low volume matrix to exhibit reduced elastic deformation after heat treating which increases the compression of the superconducting filament on cooling and thereby improve the strain characteristics of the wire.

  2. Superconducting wire with improved strain characteristics

    DOEpatents

    Luhman, Thomas; Klamut, Carl J.; Suenaga, Masaki; Welch, David

    1982-01-01

    A superconducting wire comprising a superconducting filament and a beryllium strengthened bronze matrix in which the addition of beryllium to the matrix permits a low volume matrix to exhibit reduced elastic deformation after heat treating which increases the compression of the superconducting filament on cooling and thereby improve the strain characteristics of the wire.

  3. Comparison of Fiber Optic Strain Demodulation Implementations

    NASA Technical Reports Server (NTRS)

    Quach, Cuong C.; Vazquez, Sixto L.

    2005-01-01

    NASA Langley Research Center is developing instrumentation based upon principles of Optical Frequency-Domain Reflectometry (OFDR) for the provision of large-scale, dense distribution of strain sensors using fiber optics embedded with Bragg gratings. Fiber Optic Bragg Grating technology enables the distribution of thousands of sensors immune to moisture and electromagnetic interference with negligible weight penalty. At Langley, this technology provides a key component for research and development relevant to comprehensive aerospace vehicle structural health monitoring. A prototype system is under development that includes hardware and software necessary for the acquisition of data from an optical network and conversion of the data into strain measurements. This report documents the steps taken to verify the software that implements the algorithm for calculating the fiber strain. Brief descriptions of the strain measurement system and the test article are given. The scope of this report is the verification of software implementations as compared to a reference model. The algorithm will be detailed along with comparison results.

  4. Genome Sequence of Corynebacterium ulcerans Strain 210932

    PubMed Central

    Viana, Marcus Vinicius Canário; de Jesus Benevides, Leandro; Batista Mariano, Diego Cesar; de Souza Rocha, Flávia; Bagano Vilas Boas, Priscilla Carolinne; Folador, Edson Luiz; Pereira, Felipe Luiz; Alves Dorella, Fernanda; Gomes Leal, Carlos Augusto; Fiorini de Carvalho, Alex; Silva, Artur; de Castro Soares, Siomar; Pereira Figueiredo, Henrique Cesar; Guimarães, Luis Carlos

    2014-01-01

    In this work, we present the complete genome sequence of Corynebacterium ulcerans strain 210932, isolated from a human. The species is an emergent pathogen that infects a variety of wild and domesticated animals and humans. It is associated with a growing number of cases of a diphtheria-like disease around the world. PMID:25428977

  5. Natural antimicrobial susceptibilities of Plesiomonas shigelloides strains.

    PubMed

    Stock, I; Wiedemann, B

    2001-12-01

    The natural susceptibility of 74 Plesiomonas shigelloides strains isolated from humans (n = 50), water (n = 22) and animals (n = 2) to 71 antibiotics was examined. MICs were performed using a microdilution procedure with Mueller-Hinton broth and an inoculum of 1 x 10(6) cfu/mL. Plesiomonas strains were naturally susceptible or naturally susceptible and intermediate to tetracyclines, several aminoglycosides, aminopenicillins in combination with beta-lactamase inhibitors, all cephalosporins except cefoperazone, ceftazidime and cefepime, carbapenems, aztreonam, quinolones, trimethoprim, sulfamethoxazole, azithromycin, chloramphenicol, nitrofurantoin and fosfomycin. Uniform natural resistance was found to all penicillins tested, roxithromycin, clarithromycin, lincosamides, streptogramins, glycopeptides and fusidic acid. Plesiomonas strains were naturally resistant and intermediate to streptomycin, erythromycin and rifampicin. There were two susceptibility patterns to piperacillin/tazobactam, several cephalosporins and aztreonam. In contrast to a previous study with beta-lactam antibiotics, susceptibility testing of non-beta-lactams revealed no alterations of the MICs of most antibiotics, using different inocula and media. A database is described of the natural susceptibility of P. shigelloides strains to a wide range of antibiotics. It can be used for the validation of susceptibility test results of these bacteria. PMID:11733464

  6. Revisiting the gauge fields of strained graphene

    NASA Astrophysics Data System (ADS)

    Iorio, Alfredo; Pais, Pablo

    2015-12-01

    We show that when graphene is only subject to strain, the spin connection gauge field that arises plays no measurable role, but when intrinsic curvature is present and strain is small, spin connection dictates most of the physics. We do so by showing that the Weyl field associated with strain is a pure gauge field and no constraint on the (2 +1 )-dimensional spacetime appears. On the other hand, for constant intrinsic curvature that also gives a pure gauge Weyl field, we find a classical manifestation of a quantum Weyl anomaly, descending from a constrained spacetime. We are in the position to do this because we find the equations that the conformal factor in (2 +1 ) dimensions has to satisfy, which is a nontrivial generalization to (2 +1 ) dimensions of the classic Liouville equation of the differential geometry of surfaces. Finally, we comment on the peculiarities of the only gauge field that can describe strain, the well-known pseudogauge field A1˜u11-u22 and A2˜u12 , and conclude by offering some scenarios in fundamental physics that this peculiar field could help to realize.

  7. Photonic skin for pressure and strain sensing

    NASA Astrophysics Data System (ADS)

    Chen, Xianfeng; Zhang, C.; van Hoe, B.; Webb, D. J.; Kalli, K.; van Steenberge, G.; Peng, G.-D.

    2010-04-01

    In this paper, we report on the strain and pressure testing of highly flexible skins embedded with Bragg grating sensors recorded in either silica or polymer optical fibre. The photonic skins, with a size of 10cm x 10cm and thickness of 1mm, were fabricated by embedding the polymer fibre or silica fibre containing Bragg gratings in Sylgard 184 from Dow Corning. Pressure sensing was studied using a cylindrical metal post placed on an array of points across the skin. The polymer fibre grating exhibits approximately 10 times the pressure sensitivity of the silica fibre and responds to the post even when it is placed a few centimetres away from the sensing fibre. Although the intrinsic strain sensitivities of gratings in the two fibre types are very similar, when embedded in the skin the polymer grating displayed a strain sensitivity approximately 45 times greater than the silica device, which also suffered from considerable hysteresis. The polymer grating displayed a near linear response over wavelength shifts of 9nm for 1% strain. The difference in behaviour we attribute to the much greater Young's modulus of the silica fibre (70 GPa) compared to the polymer fibre (3 GPa).

  8. Manipulating fluorescence intensity with mechanical strains

    NASA Astrophysics Data System (ADS)

    Zhao, Weiwei; Bi, Kedong; Zhang, Hongze; Guo, Xitao; Ni, Zhenhua; Chen, Yunfei

    2015-01-01

    In this paper we show that the fluorescence of rhodamine 6G (R6G) can be manipulated by applying mechanical strains to gold nanoparticles (GNs) sandwiched in graphene/GNs/polydimethylsiloxane (graphene/GNs/PDMS) structure. The fluorescence intensity of R6G on the graphene/GNs/PDMS sample shows a gradual increase with the mechanical strain. However, the fluorescence intensity of R6G on the graphene/PDMS structure without the GNs buried in between is almost unchanged under the action of the external mechanical strain. Experiment results indicate that the gap distance change between the GNs is the main cause of the fluorescence intensity increase and graphene, as a passivation layer, does not block the energy transfer from R6G to GNs. Compared with that tuning the gap distance between GNs by preparing various GNs samples, applying macroscopic mechanical strain on GNs is a simple way to manipulate the fluorescence intensity of a specific material and brings a new perspective for optoelectronic applications.

  9. On Boreholes and PBO Borehole Strain

    NASA Astrophysics Data System (ADS)

    Gladwin, M. T.; Mee, M. W.

    2003-12-01

    Borehole tensor strainmeters (GTSM) installed in Australia and California have established a baseline of data spanning more than twenty years. The current baseline of data allows characterisation of a moderate number of instruments in a range of very different environments in a way which defines reasonable performance expectations for the upcoming PBO deployments. A generic understanding of effects which result from the process of installation of the instrument in a stressed rock mass emerges. This indicates that, provided due allowance is made for experimentally determined borehole recovery effects, the contribution of borehole strain meters more than adequately fills the observational gap between high stability/long term geodetic measurements of strain and strain rates and high resolution/high frequency seismic observations of earth deformation processes. The various strain relief processes associated with the installation procedures and borehole recovery effects associated with pre-existing stress fields will be documented. Procedures for calibration of the total borehole inclusion and for progressive removal of effects due to rock anisotropy and visco-elastic creep of the grout and rock close to the borehole from far field tectonic effects will be defined and illustrated with examples. Observed deviations from these processes will be shown to be small and consistent with otherwise observed or implied fault motions. Full details of these borehole induced processes are, however, difficult to determine in the early years following installation, particularly if there is significant tectonic activity at the time. Once quantified for each site, the effects can be robustly removed from data streams.

  10. Simple Numerical Simulation of Strain Measurement

    NASA Technical Reports Server (NTRS)

    Tai, H.

    2002-01-01

    By adopting the basic principle of the reflection (and transmission) of a plane polarized electromagnetic wave incident normal to a stack of films of alternating refractive index, a simple numerical code was written to simulate the maximum reflectivity (transmittivity) of a fiber optic Bragg grating corresponding to various non-uniform strain conditions including photo-elastic effect in certain cases.

  11. Role Strain in University Research Centers

    ERIC Educational Resources Information Center

    Boardman, Craig; Bozeman, Barry

    2007-01-01

    One way in which university faculty members' professional lives have become more complex with the advent of contemporary university research centers is that many faculty have taken on additional roles. The authors' concern in this article is to determine the extent to which role strain is experienced by university faculty members who are…

  12. Prediction of swelling rocks strain in tunneling

    NASA Astrophysics Data System (ADS)

    Parsapour, D.; Fahimifar, A.

    2016-05-01

    Swelling deformations leading to convergence of tunnels may result in significant difficulties during the construction, in particular for long term use of tunnels. By extracting an experimental based explicit analytical solution for formulating swelling strains as a function of time and stress, swelling strains are predicted from the beginning of excavation and during the service life of tunnel. Results obtained from the analytical model show a proper agreement with experimental results. This closed-form solution has been implemented within a numerical program using the finite element method for predicting time-dependent swelling strain around tunnels. Evaluating effects of swelling parameters on time-dependent strains and tunnel shape on swelling behavior around the tunnel according to this analytical solution is considered. The ground-support interaction and consequent swelling effect on the induced forces in tunnel lining is considered too. Effect of delay in lining installation on swelling pressure which acting on the lining and its structural integrity, is also evaluated. A MATLAB code of " SRAP" is prepared and applied to calculate all swelling analysis around tunnels based on analytical solution.

  13. Neutron apparatus for measuring strain in composites

    DOEpatents

    Kupperman, David S.; Majumdar, Saurindranath; Faber, Jr., John F.; Singh, J. P.

    1990-01-01

    A method and apparatus for orienting a pulsed neutron source and a multi-angle diffractometer toward a sample of a ceramic-matrix or metal-matrix composite so that the measurement of internal strain (from which stress is calculated) is reduced to uncomplicated time-of-flight measurements.

  14. Characterizing large strain crush response of redwood

    SciTech Connect

    Cramer, S.M.; Hermanson, J.C.; McMurtry, W.M.

    1996-12-01

    Containers for the transportation of hazardous and radioactive materials incorporate redwood in impact limiters. Redwood is an excellent energy absorber, but only the most rudimentary information exists on its crush properties. The objectives of the study were to fill the information gap by collecting triaxial load-deformation data for redwood; to use these data to characterize redwood crush, assess current wood failure theories, provide developments toward a complete stress-strain theory for redwood; and to review the literature on strain-rate effects on redwood crush performance. The load-deformation responses of redwood at temperature conditions corresponding to ambient (70{degrees}F), 150{degrees}F, and {minus}20{degrees}F conditions were measured in approximately 100 confined compression tests for crush levels leading to material densification. Data analysis provided a more complete description of redwood crush performance and a basis for assessing proposed general orthotropic stress-strain relationships for redwood. A review of existing literature indicated that strain-rate effects cause at most a 20 percent increase in crush stress parallel to grain.

  15. Charge and Strain Control of Interface Magnetism

    NASA Astrophysics Data System (ADS)

    Fitzsimmons, M. R.; Dumesnil, K.; Jaouen, N.; Maroutian, T.; Agnus, G.; Tonnerre, J.-M.; Kirby, B.; Fohtung, E.; Holladay, B.; Fullerton, E. E.; Shpyrko, O.; Sinha, S. K.; Wang, Q.; Chen, A.; Jia, Q. X.

    2015-03-01

    We studied the influence of an electric field applied to an La0.67Sr0.33MnO3 (LSMO) layer in a LSMO/Pb(Zr0.2Ti0.8) O3 (PZT)/Nb-doped SrTiO3 (STO) heterostructure by measuring its magnetization depth profile using resonant x-ray magnetic reflectivity. The saturation magnetization of the ferromagnetically-ordered LSMO was not affected by the direction of the polarization of the PZT. However, the ferromagnetic thickness and magnetization of the LSMO film at remanence were reduced for hole-charge accumulation at the LSMO/PZT interface. To understand the independent roles of strain and hole-doping, we performed neutron scattering experiments of La0.8Sr0.2MnO3 films grown on Nb-doped STO in which bending strain (via 4-point bending jig) or electric field (via parallel plate capacitor) was applied to the films. We observed that bending strain affects the saturation magnetization of the LSMO film, whereas electric field affects the remanent magnetization of the film. These observations suggest strain may be a more effective means to control magnetism than charge. This work has benefited from use of CINT(LANL), NIST Center for Neutron Research and the Synchrotron SOLEIL and funding from LANL/LDRD program, DOE-BES (UCSD) and DOD (NMSU).

  16. High strain-rate magnetoelasticity in Galfenol

    NASA Astrophysics Data System (ADS)

    Domann, J. P.; Loeffler, C. M.; Martin, B. E.; Carman, G. P.

    2015-09-01

    This paper presents the experimental measurements of a highly magnetoelastic material (Galfenol) under impact loading. A Split-Hopkinson Pressure Bar was used to generate compressive stress up to 275 MPa at strain rates of either 20/s or 33/s while measuring the stress-strain response and change in magnetic flux density due to magnetoelastic coupling. The average Young's modulus (44.85 GPa) was invariant to strain rate, with instantaneous stiffness ranging from 25 to 55 GPa. A lumped parameters model simulated the measured pickup coil voltages in response to an applied stress pulse. Fitting the model to the experimental data provided the average piezomagnetic coefficient and relative permeability as functions of field strength. The model suggests magnetoelastic coupling is primarily insensitive to strain rates as high as 33/s. Additionally, the lumped parameters model was used to investigate magnetoelastic transducers as potential pulsed power sources. Results show that Galfenol can generate large quantities of instantaneous power (80 MW/m3 ), comparable to explosively driven ferromagnetic pulse generators (500 MW/m3 ). However, this process is much more efficient and can be cyclically carried out in the linear elastic range of the material, in stark contrast with explosively driven pulsed power generators.

  17. Quality Control On Strained Semiconductor Devices

    SciTech Connect

    Dommann, Alex; Neels, Antonia

    2010-11-24

    New semiconductor devices are based very often on strained silicon which promises to squeeze more device performance out of current devices. With strained silicon it is possible to get the same device performance using less power. The technique is using strain as a 'design element' for silicon to improve the device performance and has become a hot topic in semiconductor research in the past years. However in the same time topics like 'System in Package'(SiP) on thin wafers are getting more and more important. The chips of thin wafers in advanced packaging are extremely sensitive to induced stresses due to packaging issues. If we are using now strain as a design element for improving device performance we increase the sensitivity again and therefore also the risk of aging of such SiP's. High Resolution X-ray diffraction (HRXRD) techniques such as Rocking Curves (RC's) and Reciprocal Space Mapping (RSM) are therefore very powerful tools to study the stresses in packaged devices.

  18. Strain intermittency in shape-memory alloys

    NASA Astrophysics Data System (ADS)

    Balandraud, Xavier; Barrera, Noemi; Biscari, Paolo; Grédiac, Michel; Zanzotto, Giovanni

    2015-05-01

    We study experimentally the intermittent progress of the mechanically induced martensitic transformation in a Cu-Al-Be single crystal through a full-field measurement technique: the grid method. We utilize an in-house, specially designed gravity-based device, wherein a system controlled by water pumps applies a perfectly monotonic uniaxial load through very small force increments. The sample exhibits hysteretic superelastic behavior during the forward and reverse cubic-monoclinic transformation, produced by the evolution of the strain field of the phase microstructures. The in-plane linear strain components are measured on the sample surface during the loading cycle, and we characterize the strain intermittency in a number of ways, showing the emergence of power-law behavior for the strain avalanching over almost six decades of magnitude. We also describe the nonstationarity and the asymmetry observed in the forward versus reverse transformation. The present experimental approach, which allows for the monitoring of the reversible martensitic transformation both locally and globally in the crystal, proves useful and enhances our capabilities in the analysis and possible control of transition-related phenomena in shape-memory alloys.

  19. Attaching strain transducers to fragile materials

    NASA Technical Reports Server (NTRS)

    Duggan, M. F.

    1979-01-01

    A-shaped clamp prevents damage to thin, brittle specimens and supports displacement transducer away from heated zone. Also it defines reference points for strain measurement on specimen surface thus preventing specimen cracking due to unequal thermal expansion between clamp and holder.

  20. Stress calculator speedily converts strain data

    NASA Technical Reports Server (NTRS)

    Cornett, D. W.

    1967-01-01

    Stress calculator permits speedy conversion of strain data directly into maximum and minimum stresses and also determines stress direction. The calculator has a movable slide with logarithmic and linear scales, and an information and grid board. Its size is flexible for easy manipulation.

  1. Asymmetric quadrilateral shell elements for finite strains

    NASA Astrophysics Data System (ADS)

    Areias, P.; Dias-da-Costa, D.; Pires, E. B.; Van Goethem, N.

    2013-07-01

    Very good results in infinitesimal and finite strain analysis of shells are achieved by combining either the enhanced-metric technique or the selective-reduced integration for the in-plane shear energy and an assumed natural strain technique (ANS) in a non-symmetric Petrov-Galerkin arrangement which complies with the patch-test. A recovery of the original Wilson incompatible mode element is shown for the trial functions in the in-plane components. As a beneficial side-effect, Newton-Raphson convergence behavior for non-linear problems is improved with respect to symmetric formulations. Transverse-shear and in-plane patch tests are satisfied while distorted-mesh accuracy is higher than with symmetric formulations. Classical test functions with assumed-metric components are required for compatibility reasons. Verification tests are performed with advantageous comparisons being observed in all of them. Applications to large displacement elasticity and finite strain plasticity are shown with both low sensitivity to mesh distortion and (relatively) high accuracy. A equilibrium-consistent (and consistently linearized) updated-Lagrangian algorithm is proposed and tested. Concerning the time-step dependency, it was found that the consistent updated-Lagrangian algorithm is nearly time-step independent and can replace the multiplicative plasticity approach if only moderate elastic strains are present, as is the case of most metals.

  2. Strain concentrations in pipelines with concrete coating

    SciTech Connect

    Ness, O.B.; Verley, R.

    1996-08-01

    This paper concerns the strain distribution, and in particular strain concentration in field joints, for concrete-covered pipelines during laying. A semi-analytical model, full-scale tests to verify the model, and results of a parameter study are described. The model is used to establish nonlinear moment-curvature curves at a number of cross sections on the concrete-coated pipe and in the field joint (FJ). These are used to establish a strain concentration factor (SCF) for the FJ, or characteristics for a varying stiffness model of a pipe for direct use in lay analyses. Constant moment, four-point bending tests have been conducted on 16-in and 20-in dia, concrete-coated pipes as well as material tests on the pipe steel, corrosion coating and concrete. The behavior of the pipe, and in particular the SCF at the field joints, is investigated and compared to predictions using the semi-analytical model. The model is found to give a good prediction of the SCF and strain distribution along the pipe joint, for both the steel and the concrete, and is suitable for use in lay analyses for the overbend of S-mode lay vessels.

  3. Aligned carbon nanotube sheet piezoresistive strain sensors

    NASA Astrophysics Data System (ADS)

    Li, Ang; Bogdanovich, Alexander E.; Bradford, Philip D.

    2015-09-01

    Carbon nanotubes (CNTs) have a unique set of properties that may be useful in the production of next generation structural health monitoring composites. This research introduces a novel CNT based material system for strain and damage sensing applications. An aligned sheet of interconnected CNTs was drawn from a chemical vapor deposition grown CNT array and then bonded to the surface of glass fiber/epoxy composite coupons. Various types of mechanical tests were conducted, accompanied by real-time electrical data acquisition, in order to evaluate the electro-mechanical behavior of the developed sensing material. Specimens were loaded in the longitudinal and transverse CNT sheet orientations to investigate the anisotropy of the piezoresistive effect. The CNT sheets exhibited good sensing stability, linearity, sensitivity and repeatability within a practical strain range; which are crucial sensor features for health monitoring. It was also demonstrated that the CNT orientation in the sheet had a dramatic effect on the sensitivity, thus validating the usefulness of this sensing material for directional strain/damage monitoring. Finally, pre-straining of the CNT sheet sensors was conducted to further enhance the linearity of electro-mechanical response and long-term stability of the sensors during cyclic loading.

  4. On strain and stress in living cells

    NASA Astrophysics Data System (ADS)

    Cox, Brian N.; Smith, David W.

    2014-11-01

    Recent theoretical simulations of amelogenesis and network formation and new, simple analyses of the basic multicellular unit (BMU) allow estimation of the order of magnitude of the strain energy density in populations of living cells in their natural environment. A similar simple calculation translates recent measurements of the force-displacement relation for contacting cells (cell-cell adhesion energy) into equivalent volume energy densities, which are formed by averaging the changes in contact energy caused by a cell's migration over the cell's volume. The rates of change of these mechanical energy densities (energy density rates) are then compared to the order of magnitude of the metabolic activity of a cell, expressed as a rate of production of metabolic energy per unit volume. The mechanical energy density rates are 4-5 orders of magnitude smaller than the metabolic energy density rate in amelogenesis or bone remodeling in the BMU, which involve modest cell migration velocities, and 2-3 orders of magnitude smaller for innervation of the gut or angiogenesis, where migration rates are among the highest for all cell types. For representative cell-cell adhesion gradients, the mechanical energy density rate is 6 orders of magnitude smaller than the metabolic energy density rate. The results call into question the validity of using simple constitutive laws to represent living cells. They also imply that cells need not migrate as inanimate objects of gradients in an energy field, but are better regarded as self-powered automata that may elect to be guided by such gradients or move otherwise. Thus Ġel=d/dt 1/2 >[(C11+C12)ɛ02+2μγ02]=(C11+C12)ɛ0ɛ˙0+2μγ0γ˙0 or Ġel=ηEɛ0ɛ˙0+η‧Eγ0γ˙0 with 1.4≤η≤3.4 and 0.7≤η‧≤0.8 for Poisson's ratio in the range 0.2≤ν≤0.4 and η=1.95 and η‧=0.75 for ν=0.3. The spatial distribution of shear strains arising within an individual cell as cells slide past one another during amelogenesis is not known

  5. Microstructural changes, steady-state deformation and strain localisation during large strain deformation of rocks

    NASA Astrophysics Data System (ADS)

    Barnhoorn, A.

    2012-04-01

    Ductile deformation in the Earth's crust and mantle is often concentrated in narrow shear zones. These shear zones play a fundamental role in the deformation dynamics of the earth's lithosphere during mountain building, subduction and continental break-up. Shear zones exhibit large amounts of strain with an increase in strain from the edge to the center of the shear zone. Those large strains are often accompanied with large changes in microstructure due to processes such as dynamic recrystallization, grain size refinement, development of strong foliations, development of crystallographic preferred orientations, weakening of the rock as well as progressive localisation of the deformation into more and more concentrated zones. The interplay between all those different processes produce the various microstructures that are often studied in natural shear zones to assess the deformation conditions and history of plate tectonic processes. Experimental deformation studies under controlled conditions are used to produce relationships between the different processes active in shear zones (rheology, microstructural changes, and CPO development) in order to make those quantitative inferences on natural shear zones, Here I will present the outcomes from large strain torsion experiments at elevated temperatures and pressures on monophase calcitic rocks showing that very large strains are needed before true steady-state conditions in rocks are attained. Continuous changes in crystallographic preferred orientations and continuous dynamic recrystallization by grain boundary migration and subgrain rotation recrystallization occur up to the largest shear strains achieved in the study (shear strain of 50). Dynamic recrystallization from an undeformed coarse-grained calcite rock types towards a fine-grained ultramylonite is accompanied by a modest (~20%) weakening of the rock. However, this modest weakening never caused strain localisation in the samples. In contrast to the

  6. Ultrasonic actuators: Remote strain measurements, high strain horns and ultrasonic chromatography

    NASA Astrophysics Data System (ADS)

    Lee, Chung Hoon

    In this thesis, optical diffraction strain measurement, silicon-based ultrasonic horn actuators for thin film testing, and mufluidic assay systems are presented. Optical ultrasonic strain measurement: Using optical diffraction gratings integrated on a PZT/silicon laminate actuator, the strain on the actuator was optically and remotely measured. The methodology, limitations, analytical and numerical (ANSYS) analysis are presented. This technology of diffraction grating for ultrasonic strain measurements could lead to an instrument useful for remote monitoring of strain on MEMS sensors. Design of high efficiency silicon-based ultrasonic horn, and their fabrication for thin film testing under cyclic load: A detailed ultrasonic horn design and its analysis are resented. For this application a Gaussian horn is utilized. Most ultrasonic horns have a single point maximum strain point along the horn resulting in strain gradient at all points. For the purpose of straining thin films it is desirable to have areas of spatially constant strain fields. Remarkably, the Gaussian horn has a constant strain area suitable for thin film testing. High strain values can lead to testing not only fatigue, but also fracture of thin films. We feel that the ability to generate constant ultrasonic strain areas on silicon is a technique suitable for industrial and academic material characterization. A portable high-intensity ultrasonic actuator for mufluidic separation (ultrasonic chromatography): Micro-particle manipulation in a liquid using ultrasonic fields in a micro-channel, principle of operation, and analysis are presented. Beads of different sizes could be separated within an optically viewable aperture (˜100 mum). It is found that the separation occurs due to ultrasonic radiation force and a new inertial force, acting on the beads. The key mechanism of focusing beads at the nodes of ultrasonic standing waves, and the origin of the inertial force for the separation are described. The

  7. Strained silicon: A dielectric-response calculation

    SciTech Connect

    Levine, Z.H.; Zhong, H.; Wei, S. ); Allan, D.C. Department of Physics, The Ohio State University, Columbus, Ohio 43210-1106 ); Wilkins, J.W. )

    1992-02-15

    Strain-induced birefringence is calculated with crystalline silicon for pressure applied along the (001) and (111) directions of the crystal. Results for the dielectric function and its change under hydrostatic strain are also given. The results are calculated for photon energies in the range 0--3.25 eV, i.e., below the direct band gap. We have made a fully-self-consistent Kohn-Sham local-density-approximation calculation, in the pseudopotential, plane-wave scheme, with a self-energy correction in the form of a rigid shift of the conduction bands of magnitude {Delta}=0.9 eV. Agreement with experiment is very good in the static limit, considering disagreements among the experimental values. Values of the photoelastic tensor for (001) strain are {ital p}{sub 11}{minus}{ital p}{sub 12}={minus}0.118 (theory) and {minus}0.111{plus minus}0.005, {minus}0.127{plus minus}0.005 (expt.). For (111) strain, we obtain {ital p}{sub 44}={minus}0.050 (theory) and {minus}0.051{plus minus}0.002, {minus}0.051{plus minus}0.002 (sic) (expt.); for hydrostatic distortions, {ital p}{sub 11}+2{ital p}{sub 12}={minus}0.067 (theory) and {minus}0.055{plus minus}0.006, {minus}0.070{plus minus}0.008 (expt.). For the static dielectric constant, we obtain 10.9, compared to 11.7 and 11.4 (0 K) (expt.). All experiments quoted are at room temperature, except as noted. Above 2 eV, the calculation predicts less dispersion than seen by the experiments. Thermal effects and electron-hole interactions are estimated to resolve some of the discrepancies with experiment. The experimental data for (001) strains is not consistent with a single-oscillator model, and is therefore suspect.

  8. Searching for Strain Transients in PBO data

    NASA Astrophysics Data System (ADS)

    Wei, M.; McGuire, J. J.; Richardson, E.; Kraft, R. L.; Hardwig, M. D.

    2011-12-01

    We applied a recently developed strain anomaly detector, the Network Stain Filter [Ohtani et al., 2010], to the continuous GPS datasets from the PBO in Alaska and Salton Trough. The strategy of the filter is to find spatially and temporally coherent signals by processing data from the entire network simultaneously. Compared to previous Network Inversion Filter [Segall and Matthews, 1997], the new detector does not require the knowledge of potential sources, which can be either unknown and/or very numerous in a large tectonically active area. At Alaska, we find a strain anomaly between Kodiak Island and Kenai Peninsula that began in early 2010. There are earthquakes that are likely related to the strain anomaly. The physical interpretation of the strain anomaly is still in progress. The secular motion since 2006 that PBO recorded is consistent with a model that consist of two locked patches on Kodiak Island and Kenai Peninsula and a creeping patch near Cook Inlet as determined earlier by Zweck et al. [2002]. Seasonal signals dominate in the data and are highly correlated between stations in the horizontal components. The reason for this correlation in seasonal term azimuths between stations is not clear. At Salton Trough, the post-seismic deformation of the 2010 Mw 7.2 El Mayor Earthquake dominates the transient signals. The maximum post-seismic slip recorded by the GPS is 23 mm during 1.5 years after the earthquake (Site ID P494). Additionally, we are exploring using InSAR data as a complimentary method for detecting strain anomaly in areas with shallow sources, such as in the Salton Trough. A creep event on the Superstition Hills Fault in October 2006 has been observed by InSAR but missed by nearby GPS stations due to low amplitude at the location [Wei et al., 2009].

  9. Unexpected strain-stiffening in crystalline solids.

    PubMed

    Jiang, Chao; Srinivasan, Srivilliputhur G

    2013-04-18

    Strain-stiffening--an increase in material stiffness at large strains--is a vital mechanism by which many soft biological materials thwart excessive deformation to protect tissue integrity. Understanding the fundamental science of strain-stiffening and incorporating this concept into the design of metals and ceramics for advanced applications is an attractive prospect. Using cementite (Fe3C) and aluminium borocarbide (Al3BC3) as prototypes, here we show via quantum-mechanical calculations that strain-stiffening also occurs, surprisingly, in simple inorganic crystalline solids and confers exceptionally high strengths to these two solids, which have anomalously low resistance to deformation near equilibrium. For Fe3C and Al3BC3, their ideal shear strength to shear modulus ratios attain remarkably high values of 1.14 and 1.34 along the (010)[001] and slip systems, respectively. These values are more than seven times larger than the original Frenkel value of 1/2π (refs 4, 5) and are the highest yet reported for crystalline solids. The extraordinary stiffening of Fe3C arises from the strain-induced reversible 'cross-linking' between weakly coupled edge- and corner-sharing Fe6C slabs. This new bond formation creates a strong, three-dimensional covalent bond network that resists large shear deformation. Unlike Fe3C, no new bond forms in Al3BC3 but stiffening still occurs because strong repulsion between Al and B in a compressed Al-B bond unsettles the existing covalent bond network. These discoveries challenge the conventional wisdom that large shear modulus is a reliable predictor of hardness and strength of materials, and provide new lessons for materials selection and design. PMID:23575634

  10. Strain rate effects for spallation of concrete

    NASA Astrophysics Data System (ADS)

    Häussler-Combe, Ulrich; Panteki, Evmorfia; Kühn, Tino

    2015-09-01

    Appropriate triaxial constitutive laws are the key for a realistic simulation of high speed dynamics of concrete. The strain rate effect is still an open issue within this context. In particular the question whether it is a material property - which can be covered by rate dependent stress strain relations - or mainly an effect of inertia is still under discussion. Experimental and theoretical investigations of spallation of concrete specimen in a Hopkinson Bar setup may bring some evidence into this question. For this purpose the paper describes the VERD model, a newly developed constitutive law for concrete based on a damage approach with included strain rate effects [1]. In contrast to other approaches the dynamic strength increase is not directly coupled to strain rate values but related to physical mechanisms like the retarded movement of water in capillary systems and delayed microcracking. The constitutive law is fully triaxial and implemented into explicit finite element codes for the investigation of a wide range of concrete structures exposed to impact and explosions. The current setup models spallation experiments with concrete specimen [2]. The results of such experiments are mainly related to the dynamic tensile strength and the crack energy of concrete which may be derived from, e.g., the velocity of spalled concrete fragments. The experimental results are compared to the VERD model and two further constitutive laws implemented in LS-Dyna. The results indicate that both viscosity and retarded damage are required for a realistic description of the material behaviour of concrete exposed to high strain effects [3].

  11. First strains of the genus Kluyvera in Czechoslovakia.

    PubMed

    Aldová, E; Hausner, O; Svihálková, A; Láznicková, K; Sobotková, J; Smolka, J; Horácková, O

    1985-08-01

    Fourteen of 21 strains isolated from stools, urine specimens and the hospital environment were identified as Kluyvera. All of these 14 strains corresponded with the literary description of the genus Kluyvera and were identical with two reference strains except that one of them failed to utilize sodium acetate within 7 days. One strain (No. 23441) produced massive growth on Jordan's tartrate, which some Kluyvera do. Important in differentiating indole- and Simmons' citrate-negative Kluyvera strains from Escherichia vulneris (two other of our 21 strains) is negative ornithin decarboxylase and negative Christensen citrate in the latter. Three strains were identified as Citrobacter, where especially indole-positive and urease-negative strains may be reminiscent of Kluyvera. An aberrant strain, No. 25115, which alone failed to grow at 42 degrees C and by some characters differed from Kluyvera, E. vulneris and Enteric Group 10, was identified as E. coli. PMID:4060923

  12. Delimination of brewing yeast strains using different molecular techniques.

    PubMed

    Tornai-Lehoczki, J; Dlauchy, D

    2000-12-01

    In general, the genetic characteristics, the phenotype and the microbial purity of the production brewing yeast strains are among the most important factors in maintaining a consistently good quality of products. Analysis of restriction fragment length polymorphism (RFLP) patterns of 18S rRNA-coding DNA was investigated to group ale and lager strains. All production brewing yeast strains showed the same RFLP pattern as the type strain and synonym type strains of S. cerevisiae, and were quite different from the type and synonym type strains of S. pastorianus. Based on these data, all production brewing yeast strains investigated in this study appeared to belong to S. cerevisiae. Electrophoretic karyotyping and random amplified polymorphic DNA (RAPD) analysis appeared to be suitable methods for distinguishing not only the type and synonym type strain of S. cerevisiae and S. pastorianus, but also the ale and the lager strains. PMID:11139020

  13. The influence of acute unloading on left ventricular strain and strain rate by speckle tracking echocardiography in a porcine model.

    PubMed

    Dahle, Geir Olav; Stangeland, Lodve; Moen, Christian Arvei; Salminen, Pirjo-Riitta; Haaverstad, Rune; Matre, Knut; Grong, Ketil

    2016-05-15

    Noninvasive measurements of myocardial strain and strain rate by speckle tracking echocardiography correlate to cardiac contractile state but also to load, which may weaken their value as indices of inotropy. In a porcine model, we investigated the influence of acute dynamic preload reductions on left ventricular strain and strain rate and their relation to the pressure-conductance catheter-derived preload recruitable stroke work (PRSW) and peak positive first derivative of left ventricular pressure (LV-dP/dtmax). Speckle tracking strain and strain rate in the longitudinal, circumferential, and radial directions were measured during acute dynamic reductions of end-diastolic volume during three different myocardial inotropic states. Both strain and strain rate were sensitive to unloading of the left ventricle (P < 0.001), but the load dependency for strain rate was modest compared with strain. Changes in longitudinal and circumferential strain correlated more strongly to changes in end-diastolic volume (r = -0.86 and r = -0.72) than did radial strain (r = 0.35). Longitudinal, circumferential, and radial strain significantly correlated with LV-dP/dtmax (r = -0.53, r = -0.46, and r = 0.86), whereas only radial strain correlated with PRSW (r = 0.55). Strain rate in the longitudinal, circumferential and radial direction significantly correlated with both PRSW (r = -0.64, r = -0.58, and r = 0.74) and LV-dP/dtmax (r = -0.95, r = -0.70, and r = 0.85). In conclusion, the speckle tracking echocardiography-derived strain rate is more robust to dynamic ventricular unloading than strain. Longitudinal and circumferential strain could not predict load-independent contractility. Strain rates, and especially in the radial direction, are good predictors of preload-independent inotropic markers derived from conductance catheter. PMID:26968547

  14. Genomic characterization of pseudorabies virus strains isolated in Italy.

    PubMed

    Sozzi, E; Moreno, A; Lelli, D; Cinotti, S; Alborali, G L; Nigrelli, A; Luppi, A; Bresaola, M; Catella, A; Cordioli, P

    2014-08-01

    In this study, we undertook the genomic characterization of 54 pseudorabies virus (PRV) strains isolated in Italy during 1984-2010. The characterization was based on partial sequencing of the UL44 (gC) and US8 (gE) genes; 44 strains (38 for gene gE and 36 for gC) were isolated on pig farms; 9 originated from dogs and 1 from cattle. These porcine PRV strains, which were closely related to those isolated in Europe and America in the last 20 years, and the bovine strain bovine/It/2441/1992 belong to cluster B in both phylogenetic trees. Six porcine strains that do not belong to cluster B are related in both gE and gC phylogenetic trees to the 'old' porcine PRV strains isolated in the 1970s and 1980s. In the last two decades, the presence of these strains in domestic pig populations has been reduced drastically, whereas they are prevalent in wild boar. The two remaining strains have an interesting genomic profile, characterized by the gC gene being closely related to the old porcine PRV strains, and the gE gene being similar to that of recently isolated strains. Three strains originating from working dogs on pig farms are located in cluster B in both phylogenetic trees. Five strains isolated from hunting dogs have a high degree of correlation with PRV strains circulating in wild boar. The last isolate has a gC gene similar to that in the two porcine strains mentioned previously, and the gE gene is correlated with the strains isolated from hunting dogs. These results provide interesting insight into the genomic characterization of PRV strains and reveal a clear differentiation between the strains isolated from hunting dogs that are related to the wild boar strains and those originating from domestic pigs. PMID:23331342

  15. Gendered Responses to Serious Strain: The Argument for a General Strain Theory of Deviance

    PubMed Central

    Kaufman, Joanne M.

    2010-01-01

    This paper expands and builds on newer avenues in research on gender and general strain theory (GST). I accomplish this by focusing on serious strains that are relevant for males and females, including externalizing and internalizing forms of negative emotions, and including multiple gendered deviant outcomes. Using the Add Health dataset, I find strong support for the impact of serious strains on both types of negative emotions and different forms of deviance for males and females. However, the experience of serious strain, emotionally and behaviorally, is gendered. Depressive symptoms are particularly important for all types of deviance by females. Including multiple types of deviant outcomes offers a fuller understanding of both similarities and differences by gender. These results support the utility of GST as a theory of deviance in general and support greater connections between GST, feminist theorizing, and the sociology of mental health. PMID:20625472

  16. Longitudinal residual strain and stress-strain relationship in rat small intestine

    PubMed Central

    Dou, Yanling; Fan, Yanhua; Zhao, Jingbo; Gregersen, Hans

    2006-01-01

    Background To obtain a more detailed description of the stress-free state of the intestinal wall, longitudinal residual strain measurements are needed. Furthermore, data on longitudinal stress-strain relations in visceral organs are scarce. The present study aims to investigate the longitudinal residual strain and the longitudinal stress-strain relationship in the rat small intestine. Methods The longitudinal zero-stress state was obtained by cutting tissue strips parallel to the longitudinal axis of the intestine. The longitudinal residual stress was characterized by a bending angle (unit: degrees per unit length and positive when bending outwards). Residual strain was computed from the change in dimensions between the zero-stress state and the no-load state. Longitudinal stresses and strains were computed from stretch experiments in the distal ileum at luminal pressures ranging from 0–4 cmH2O. Results Large morphometric variations were found between the duodenum and ileum with the largest wall thickness and wall area in the duodenum and the largest inner circumference and luminal area in the distal ileum (p < 0.001). The bending angle did not differ between the duodenum and ileum (p > 0.5). The longitudinal residual strain was tensile at the serosal surface and compressive at the mucosal surface. Hence, the neutral axis was approximately in the mid-wall. The longitudinal residual strain and the bending angle was not uniform around the intestinal circumference and had the highest values on the mesenteric sides (p < 0.001). The stress-strain curves fitted well to the mono-exponential function with determination coefficients above 0.96. The α constant increased with the pressure, indicating the intestinal wall became stiffer in longitudinal direction when pressurized. Conclusion Large longitudinal residual strains reside in the small intestine and showed circumferential variation. This indicates that the tissue is not uniform and cannot be treated as a homogenous

  17. Generating strain signals under consideration of road surface profiles

    NASA Astrophysics Data System (ADS)

    Putra, T. E.; Abdullah, S.; Schramm, D.; Nuawi, M. Z.; Bruckmann, T.

    2015-08-01

    The current study aimed to develop the mechanism for generating strain signal utilising computer-based simulation. The strain data, caused by the acceleration, were undertaken from a fatigue data acquisition involving car movements. Using a mathematical model, the measured strain signals yielded to acceleration data used to describe the bumpiness of road surfaces. The acceleration signals were considered as an external disturbance on generating strain signals. Based on this comparison, both the actual and simulated strain data have similar pattern. The results are expected to provide new knowledge to generate a strain signal via a simulation.

  18. Complete genome sequence of Treponema pallidum strain DAL-1

    PubMed Central

    Zobaníková, Marie; Mikolka, Pavol; Čejková, Darina; Pospíšilová, Petra; Chen, Lei; Strouhal, Michal; Qin, Xiang; Weinstock, George M.; Šmajs, David

    2012-01-01

    Treponema pallidum strain DAL-1 is a human uncultivable pathogen causing the sexually transmitted disease syphilis. Strain DAL-1 was isolated from the amniotic fluid of a pregnant woman in the secondary stage of syphilis. Here we describe the 1,139,971 bp long genome of T. pallidum strain DAL-1 which was sequenced using two independent sequencing methods (454 pyrosequencing and Illumina). In rabbits, strain DAL-1 replicated better than the T. pallidum strain Nichols. The comparison of the complete DAL-1 genome sequence with the Nichols sequence revealed a list of genetic differences that are potentially responsible for the increased rabbit virulence of the DAL-1 strain. PMID:23449808

  19. Susceptibility to antibiotics and biochemical properties of Desulfovibrio desulfuricans strains.

    PubMed

    Dzierzewicz, Z; Cwalina, B; Jaworska-Kik, M; Weglarz, L; Wilczok, T

    2001-01-01

    Susceptibility to several antibiotics and biochemical properties of intestinal and soil strains of Desulfovibrio desulfuricans bacteria were investigated using the tests: ATB ANA, Sceptor Anaerobic MIC/ID and API ZYM. It was demonstrated that the D. desulfuricans strains were resistant to penicillin, cefoxitin, clindamycin, metronidazole, erythromycin, rifampicin and teicoplanin. The strains initially susceptible to imipenem became resistant to this drug following 72 h incubation with it. Of 25 analyzed antibiotics there was none that after 72 h action on the bacteria was effective in relation to all of the investigated strains. The differences in susceptibility of D. desulfuricans strains to antibiotics were not associated with the strains' biochemical properties. PMID:12197616

  20. A Wide Extent of Inter-Strain Diversity in Virulent and Vaccine Strains of Alphaherpesviruses

    PubMed Central

    Szpara, Moriah L.; Tafuri, Yolanda R.; Parsons, Lance; Shamim, S. Rafi; Verstrepen, Kevin J.; Legendre, Matthieu; Enquist, L. W.

    2011-01-01

    Alphaherpesviruses are widespread in the human population, and include herpes simplex virus 1 (HSV-1) and 2, and varicella zoster virus (VZV). These viral pathogens cause epithelial lesions, and then infect the nervous system to cause lifelong latency, reactivation, and spread. A related veterinary herpesvirus, pseudorabies (PRV), causes similar disease in livestock that result in significant economic losses. Vaccines developed for VZV and PRV serve as useful models for the development of an HSV-1 vaccine. We present full genome sequence comparisons of the PRV vaccine strain Bartha, and two virulent PRV isolates, Kaplan and Becker. These genome sequences were determined by high-throughput sequencing and assembly, and present new insights into the attenuation of a mammalian alphaherpesvirus vaccine strain. We find many previously unknown coding differences between PRV Bartha and the virulent strains, including changes to the fusion proteins gH and gB, and over forty other viral proteins. Inter-strain variation in PRV protein sequences is much closer to levels previously observed for HSV-1 than for the highly stable VZV proteome. Almost 20% of the PRV genome contains tandem short sequence repeats (SSRs), a class of nucleic acids motifs whose length-variation has been associated with changes in DNA binding site efficiency, transcriptional regulation, and protein interactions. We find SSRs throughout the herpesvirus family, and provide the first global characterization of SSRs in viruses, both within and between strains. We find SSR length variation between different isolates of PRV and HSV-1, which may provide a new mechanism for phenotypic variation between strains. Finally, we detected a small number of polymorphic bases within each plaque-purified PRV strain, and we characterize the effect of passage and plaque-purification on these polymorphisms. These data add to growing evidence that even plaque-purified stocks of stable DNA viruses exhibit limited sequence

  1. Bioconjugation with strained alkenes and alkynes.

    PubMed

    Debets, Marjoke F; van Berkel, Sander S; Dommerholt, Jan; Dirks, A Ton J; Rutjes, Floris P J T; van Delft, Floris L

    2011-09-20

    The structural complexity of molecules isolated from biological sources has always served as an inspiration for organic chemists. Since the first synthesis of a natural product, urea, chemists have been challenged to prepare exact copies of natural structures in the laboratory. As a result, a broad repertoire of synthetic transformations has been developed over the years. It is now feasible to synthesize organic molecules of enormous complexity, and also molecules with less structural complexity but prodigious societal impact, such as nylon, TNT, polystyrene, statins, estradiol, XTC, and many more. Unfortunately, only a few chemical transformations are so mild and precise that they can be used to selectively modify biochemical structures, such as proteins or nucleic acids; these are the so-called bioconjugation strategies. Even more challenging is to apply a chemical reaction on or in living cells or whole organisms; these are the so-called bioorthogonal reactions. These fields of research are of particular importance because they not only pose a worthy challenge for chemists but also offer unprecedented possibilities for studying biological systems, especially in areas in which traditional biochemistry and molecular biology tools fall short. Recent years have seen tremendous growth in the chemical biology toolbox. In particular, a rapidly increasing number of bioorthogonal reactions has been developed based on chemistry involving strained alkenes or strained alkynes. Such strained unsaturated systems have the unique ability to undergo (3 + 2) and (4 + 2) cycloadditions with a diverse set of complementary reaction partners. Accordingly, chemistry centered around strain-promoted cycloadditions has been exploited to precisely modify biopolymers, ranging from nucleic acids to proteins to glycans. In this Account, we describe progress in bioconjugation centered around cycloadditions of these strained unsaturated systems. Being among the first to recognize the utility

  2. Creep Strain and Strain Rate Response of 2219 Al Alloy at High Stress Levels

    NASA Technical Reports Server (NTRS)

    Taminger, Karen M. B.; Wagner, John A.; Lisagor, W. Barry

    1998-01-01

    As a result of high localized plastic deformation experienced during proof testing in an International Space Station connecting module, a study was undertaken to determine the deformation response of a 2219-T851 roll forging. After prestraining 2219-T851 Al specimens to simulate strains observed during the proof testing, creep tests were conducted in the temperature range from ambient temperature to 107 C (225 F) at stress levels approaching the ultimate tensile strength of 2219-T851 Al. Strain-time histories and strain rate responses were examined. The strain rate response was extremely high initially, but decayed rapidly, spanning as much as five orders of magnitude during primary creep. Select specimens were subjected to incremental step loading and exhibited initial creep rates of similar magnitude for each load step. Although the creep rates decreased quickly at all loads, the creep rates dropped faster and reached lower strain rate levels for lower applied loads. The initial creep rate and creep rate decay associated with primary creep were similar for specimens with and without prestrain; however, prestraining (strain hardening) the specimens, as in the aforementioned proof test, resulted in significantly longer creep life.

  3. Strain rate dependency of oceanic intraplate earthquake b-values at extremely low strain rates

    NASA Astrophysics Data System (ADS)

    Sasajima, Ryohei; Ito, Takeo

    2016-06-01

    We discovered a clear positive dependence of oceanic intraplate earthquake (OCEQ) b-values on the age of the oceanic lithosphere. OCEQ b-values in the youngest (<10 Ma) oceanic lithosphere are around 1.0, while those in middle to old (>20 Ma) oceanic lithosphere exceed 1.5, which is significantly higher than the average worldwide earthquake b-value (around 1.0). On the other hand, the b-value of intraplate earthquakes in the Ninety East-Sumatra orogen, where oceanic lithosphere has an anomalously higher strain rate compared with normal oceanic lithosphere, is 0.93, which is significantly lower than the OCEQ b-value (about 1.9) with the same age (50-110 Ma). Thus, the variation in b-values relates to the strain rate of the oceanic lithosphere and is not caused by a difference in thermal structure. We revealed a negative strain rate dependency of the b-value at extremely low strain rates (<2 × 10-10/year), which can clearly explain the above b-values. We propose that the OCEQ b-value depends strongly on strain rate (either directly or indirectly) at extremely low strain rates. The high OCEQ b-values (>1.5) in oceanic lithosphere >20 Ma old imply that future improvement in seismic observation will capture many smaller magnitude OCEQs, which will provide valuable information on the evolution of the oceanic lithosphere and the driving mechanism of plate tectonics.

  4. EDITORIAL: Excelling under strain: band engineering in nanomaterials Excelling under strain: band engineering in nanomaterials

    NASA Astrophysics Data System (ADS)

    Demming, Anna

    2013-08-01

    A little stress or strain has been known to improve the performance of athletes, actors and of course nanomaterials alike. In fact strain in silicon is now a major engineering tool for improving the performance of devices, and is ubiquitously used in device design and fabrication. Strain engineering alters a material's band structure, a model of electron behaviour that describes how as atoms come together in a solid, their discrete electron orbitals overlap to ultimately give rise to bands of allowed energy levels. In a strained crystal lattice of silicon or silicon germanium the distance between atoms in the lattice is greater than usual and the bands of allowed energy levels change. This July marks 100 years since Bohr submitted his paper 'On the constitution of atoms and molecules' [1] where he describes the structure of the atom in terms of discrete allowed energy levels. The paper was a seminal contribution to the development of quantum mechanics and laid the initial theoretical precepts for band gap engineering in devices. In this issue Nrauda and a collaboration of researchers in Europe and Australia study the growth of defect-free SiGe islands on pre-patterned silicon [2]. They analyse the strain in the islands and determine at what point lattice dislocations set in with a view to informing implementation of strain engineering in devices. The effects of strain on band structure in silicon and germanium were already studied and reported in the 1950s [3, 4]. Since then the increasing focus on nanoscale materials and the hunger for control of electronic properties has prompted further study of strain effects. The increased surface area to volume ratio in nanostructures changes the strain behaviour with respect to bulk materials, and this can also be exploited for handling and fine tuning strain to manipulate material properties. It is perhaps no surprise that graphene, one of the most high-profile materials in current nanotechnology research, has attracted

  5. Fiber Bragg grating sensors for strain monitoring of steelwork

    NASA Astrophysics Data System (ADS)

    Wang, Tao; He, Dawei; Yang, Fan; Wang, Yongsheng

    2009-11-01

    Over the last few years, fiber Bragg grating (FBG) sensors have attracted a lot of interest and they are being used in various applications. This paper describes the FBG sensors used for strain monitoring of bogie and other steelworks. FBG sensors and resistance strain gauges are set on different position of steel girder, and weight is loaded on the steel girder. Strain value of the steel girder can be caught by two kinds of sensors when weight loaded is changed. Result of experiment shows that strain value obtained by resistance strain gauges and FBG sensor is coinciding. There is a linear correlation between value of strain and the weight loaded on the steel girder. FBG sensors with different encapsulations are set on bogie by acrylic plastic materials in order to monitor its dynamic strains. When sinusoidal load with its frequency from 0.15Hz to 2Hz was set on the bogie, FBG sensor system with data sampling rate of 20Hz were used to monitoring the dynamic strains. Strain data caught by FBG sensor system can offer accurate description of dynamic strain, and value of strain provided by FBG sensor suits theoretical values well. The experimental observations show that FBG sensors can be set on steelworks easily, and can monitor both static strain and dynamic strains well.

  6. Genomic Diversity of Enterotoxigenic Strains of Bacteroides fragilis

    PubMed Central

    Pierce, Jessica V.; Bernstein, Harris D.

    2016-01-01

    Enterotoxigenic (ETBF) strains of Bacteroides fragilis are the subset of strains that secrete a toxin called fragilysin (Bft). Although ETBF strains are known to cause diarrheal disease and have recently been associated with colorectal cancer, they have not been well characterized. By sequencing the complete genome of four ETBF strains, we found that these strains exhibit considerable variation at the genomic level. Only a small number of genes that are located primarily in the Bft pathogenicity island (BFT PAI) and the flanking CTn86 conjugative transposon are conserved in all four strains and a fifth strain whose genome was previously sequenced. Interestingly, phylogenetic analysis strongly suggests that the BFT PAI was acquired by non-toxigenic (NTBF) strains multiple times during the course of evolution. At the phenotypic level, we found that the ETBF strains were less fit than the NTBF strain NCTC 9343 and were susceptible to a growth-inhibitory protein that it produces. The ETBF strains also showed a greater tendency to form biofilms, which may promote tumor formation, than NTBF strains. Although the genomic diversity of ETBF strains raises the possibility that they vary in their pathogenicity, our experimental results also suggest that they share common properties that are conferred by different combinations of non-universal genetic elements. PMID:27348220

  7. Typing of Histoplasma capsulatum strains by fatty acid profile analysis

    PubMed Central

    Zarnowski, Robert; Miyazaki, Makoto; Dobrzyn, Agnieszka; Ntambi, James M.; Woods, Jon P.

    2009-01-01

    The performance of fatty acid profiling for strain differentiation of Histoplasma capsulatum was assessed. Total fatty acids were isolated from the yeast-phase cells of seven stock and two previously unreported clinical strains of H. capsulatum var. capsulatum, as well as from one unreported clinical strain and one stock strain of H. capsulatum var. duboisii, and one strain of each of three other dimorphic zoopathogenic fungal species, Blastomyces dermatitidis, Paracoccidioides brasiliensis and Sporothrix schenckii. Different colony morphology and pigmentation types of the H. capsulatum strains were also included. The most frequently occurring fatty acids were oleic, palmitic, stearic and linoleic acids. There were variations in the relative percentage fatty acid contents of H. capsulatum strains that could be used for strain identification and discrimination. Differentiation between H. capsulatum strains was achieved by the comparison of detected fatty acids accompanied by principal component analysis using calculated Varimax-rotated principal component loadings. Statistical analysis yielded three major principal components that explained over 94% of total variance in the data. All the strains of H. capsulatum var. capsulatum RFLP classes II and III were grouped into two distinct clusters: the heterogenic RFLP class I formed a large, but also well-defined group, whereas the outgroup strains of H. capsulatum var. duboisii, B. dermatitidis, P. brasiliensis and S. schenckii were shifted away. These data suggest that fatty acid profiling can be used in H. capsulatum strain classification and epidemiological studies that require strain differentiation at the intraspecies level. PMID:17510264

  8. Genomic Diversity of Enterotoxigenic Strains of Bacteroides fragilis.

    PubMed

    Pierce, Jessica V; Bernstein, Harris D

    2016-01-01

    Enterotoxigenic (ETBF) strains of Bacteroides fragilis are the subset of strains that secrete a toxin called fragilysin (Bft). Although ETBF strains are known to cause diarrheal disease and have recently been associated with colorectal cancer, they have not been well characterized. By sequencing the complete genome of four ETBF strains, we found that these strains exhibit considerable variation at the genomic level. Only a small number of genes that are located primarily in the Bft pathogenicity island (BFT PAI) and the flanking CTn86 conjugative transposon are conserved in all four strains and a fifth strain whose genome was previously sequenced. Interestingly, phylogenetic analysis strongly suggests that the BFT PAI was acquired by non-toxigenic (NTBF) strains multiple times during the course of evolution. At the phenotypic level, we found that the ETBF strains were less fit than the NTBF strain NCTC 9343 and were susceptible to a growth-inhibitory protein that it produces. The ETBF strains also showed a greater tendency to form biofilms, which may promote tumor formation, than NTBF strains. Although the genomic diversity of ETBF strains raises the possibility that they vary in their pathogenicity, our experimental results also suggest that they share common properties that are conferred by different combinations of non-universal genetic elements. PMID:27348220

  9. A tale of two mechanisms. Strain-softening versus strain-hardening in single crystals under small stressed volumes

    DOE PAGESBeta

    Bei, Hongbin; Xia, Yuzhi; Barabash, Rozaliya; Gao, Y. F.

    2015-08-10

    Pre-straining defect-free single crystals will introduce heterogeneous dislocation nucleation sources that reduce the measured strength from the theoretical value, while pre-straining bulk samples will lead to strain hardening. Their competition is investigated by nanoindentation pop-in tests on variously pre-strained Mo single crystals with several indenter radii (~micrometer). Pre-straining primarily shifts deformation mechanism from homogeneous dislocation nucleation to a stochastic behavior, while strain hardening plays a secondary role, as summarized in a master plot of pop-in strength versus normalized indenter radius.

  10. Thymineless Death in Escherichia coli: Strain Specificity

    PubMed Central

    Cummings, Donald J.; Mondale, Lee

    1967-01-01

    Thymineless death of various ultraviolet (UV)-sensitive strains of Escherichia coli B and K-12 was investigated. It was found that E. coli B, Bs−12, K-12 rec-21, and possibly K-12 Lon−, all sensitive to UV, were also sensitive to thymine starvation. However, other UV-sensitive strains of E. coli were found to display the typical resistant-type kinetics of thymineless death. The correlation of these results with various other cellular processes suggested that the filament-forming ability of the bacteria might be involved in the mechanism of thymineless death. It was apparent from the present results that capacity for host-cell reactivation, recombination ability, thymine dimer excision, and probably induction of a defective prophage had little to do with determining sensitivity to thymine deprivation. Images PMID:5337772

  11. Motion Driven by Strain Gradient Fields

    NASA Astrophysics Data System (ADS)

    Wang, Chao; Chen, Shaohua

    2015-09-01

    A new driving mechanism for direction-controlled motion of nano-scale objects is proposed, based on a model of stretching a graphene strip linked to a rigid base with linear springs of identical stiffness. We find that the potential energy difference induced by the strain gradient field in the graphene strip substrate can generate sufficient force to overcome the static and kinetic friction forces between the nano-flake and the strip substrate, resulting in the nanoscale flake motion in the direction of gradient reduction. The dynamics of the nano-flake can be manipulated by tuning the stiffness of linear springs, stretching velocity and the flake size. This fundamental law of directional motion induced by strain gradient could be very useful for promising designs of nanoscale manipulation, transportation and smart surfaces.

  12. Techniques for increasing boron fiber fracture strain

    NASA Technical Reports Server (NTRS)

    Dicarlo, J. A.

    1977-01-01

    Improvement in the strain-to-failure of CVD boron fibers is shown possible by contracting the tungsten boride core region and its inherent flaws. The results of three methods are presented in which etching and thermal processing techniques were employed to achieve core flaw contraction by internal stresses available in the boron sheath. After commercially and treatment induced surface flaws were removed from 203 micrometers (8 mil) fibers, the core flaw was observed to be essentially the only source of fiber fracture. Thus, fiber strain-to-failure was found to improve by an amount equal to the treatment induced contraction on the core flaw. Commercial feasibility considerations suggest as the most cost effective technique that method in which as-produced fibers are given a rapid heat treatment above 700 C. Preliminary results concerning the contraction kinetics and fracture behavior observed are presented and discussed both for high vacuum and argon gas heat treatment environments.

  13. OTDR strain gauge for smart skins

    SciTech Connect

    Kercel, S.W.

    1993-09-01

    Optical time-domain reflectometry (OTDR) is a simple and rugged technique for measuring quantities such as strain that affect the propagation of light in an optical fiber. For engineering applications of OTDR, it is important to know the repeatable limits of its performance. The author constructed an OTDR-based, submillimeter resolution strain measurement system from off-the-shelf components. The systems repeatably resolves changes in time of flight to within {plus_minus}2 ps. Using a 1-m, single-mode fiber as a gauge and observing the time of flight between Fresnel reflections, a repeatable sensitivity of 400 microstrains was observed. Using the same fiber to connect the legs of a 3-dB directional coupler to form a loop, a repeatable sensitivity of 200 microstrains was observed. Realizable changes to the system that should improve the repeatable sensitivity to 20 microstrains or less are discussed.

  14. Strain gradient plasticity theory applied to machining

    SciTech Connect

    Royer, Raphael; Laheurte, Raynald; Darnis, Philippe; Gerard, Alain; Cahuc, Olivier

    2011-05-04

    Machining is the most common manufacturing process. A good behaviour law is necessary in the simulation of machining processes (analytical and finite element modeling). Usually, commonly used behaviour laws such as Jonhson-Cook can bring unsatisfactory results especially for high strain and large deformation processes. Significant differences can appear between experimental and simulation results. The aim of this paper is to present the choices made regarding the behaviour law in this context. This study develops a large deformation strain-gradient theoretical framework with hypothesis linked to metal cutting processes. The theoretical framework has the potential of expressing moments at the tool tip as they were observed in experiments. It will be shown that the theory has the capability of interpreting the complex phenomena found in machining and more particularly in high speed machining.

  15. Strain gradient plasticity theory applied to machining

    NASA Astrophysics Data System (ADS)

    Royer, Raphaël; Laheurte, Raynald; Darnis, Philippe; Gérard, Alain; Cahuc, Olivier

    2011-05-01

    Machining is the most common manufacturing process. A good behaviour law is necessary in the simulation of machining processes (analytical and finite element modeling). Usually, commonly used behaviour laws such as Jonhson-Cook can bring unsatisfactory results especially for high strain and large deformation processes. Significant differences can appear between experimental and simulation results. The aim of this paper is to present the choices made regarding the behaviour law in this context. This study develops a large deformation strain-gradient theoretical framework with hypothesis linked to metal cutting processes. The theoretical framework has the potential of expressing moments at the tool tip as they were observed in experiments. It will be shown that the theory has the capability of interpreting the complex phenomena found in machining and more particularly in high speed machining.

  16. Organic chemistry. Strain-release amination.

    PubMed

    Gianatassio, Ryan; Lopchuk, Justin M; Wang, Jie; Pan, Chung-Mao; Malins, Lara R; Prieto, Liher; Brandt, Thomas A; Collins, Michael R; Gallego, Gary M; Sach, Neal W; Spangler, Jillian E; Zhu, Huichin; Zhu, Jinjiang; Baran, Phil S

    2016-01-15

    To optimize drug candidates, modern medicinal chemists are increasingly turning to an unconventional structural motif: small, strained ring systems. However, the difficulty of introducing substituents such as bicyclo[1.1.1]pentanes, azetidines, or cyclobutanes often outweighs the challenge of synthesizing the parent scaffold itself. Thus, there is an urgent need for general methods to rapidly and directly append such groups onto core scaffolds. Here we report a general strategy to harness the embedded potential energy of effectively spring-loaded C-C and C-N bonds with the most oft-encountered nucleophiles in pharmaceutical chemistry, amines. Strain-release amination can diversify a range of substrates with a multitude of desirable bioisosteres at both the early and late stages of a synthesis. The technique has also been applied to peptide labeling and bioconjugation. PMID:26816372

  17. A tunable strain sensor using nanogranular metals.

    PubMed

    Schwalb, Christian H; Grimm, Christina; Baranowski, Markus; Sachser, Roland; Porrati, Fabrizio; Reith, Heiko; Das, Pintu; Müller, Jens; Völklein, Friedemann; Kaya, Alexander; Huth, Michael

    2010-01-01

    This paper introduces a new methodology for the fabrication of strain-sensor elements for MEMS and NEMS applications based on the tunneling effect in nano-granular metals. The strain-sensor elements are prepared by the maskless lithography technique of focused electron-beam-induced deposition (FEBID) employing the precursor trimethylmethylcyclopentadienyl platinum [MeCpPt(Me)(3)]. We use a cantilever-based deflection technique to determine the sensitivity (gauge factor) of the sensor element. We find that its sensitivity depends on the electrical conductivity and can be continuously tuned, either by the thickness of the deposit or by electron-beam irradiation leading to a distinct maximum in the sensitivity. This maximum finds a theoretical rationale in recent advances in the understanding of electronic charge transport in nano-granular metals. PMID:22163443

  18. Strain rate effects in porous materials

    SciTech Connect

    Lankford, J. Jr.; Dannemann, K.A.

    1998-12-31

    The behavior of metal foams under rapid loading conditions is assessed. Dynamic loading experiments were conducted in their laboratory using a split Hopkinson pressure bar apparatus and a drop weight tester; Strain rates ranged from 45 s{sup {minus}1} to 1200 s{sup {minus}1}. The implications of these experiments on open-cell, porous metals, and closed- and open-cell polymer foams are described. It is shown that there are two possible strain-rate dependent contributors to the impact resistance of cellular metals: (i) elastic-plastic resistance of the cellular metal skeleton, and (ii) the gas pressure generated by gas flow within distorted open cells. A theoretical basis for these implications is presented.

  19. Band diagram of strained graphene nanoribbons

    NASA Astrophysics Data System (ADS)

    Prabhakar, Sanjay; Melnik, Roderick; Bonilla, Luis

    2016-04-01

    The influence of ripple waves on the band diagram of zigzag strained graphene nanoribbons (GNRs) is analyzed by utilizing the finite element method. Such waves have their origin in electromechanical effects. With a novel model, we demonstrate that electron-hole band diagrams of GNRs are highly influenced (i.e. level crossing of the bands are possible) by two combined effects: pseudo-magnetic fields originating from electroelasticity theory and external magnetic fields. In particular, we show that the level crossing point can be observed at large external magnetic fields (B ≈ 100T ) in strained GNRs, when the externally applied tensile edge stress is on the order of -100 eV/nm and the amplitude of the out-of-plane ripple waves is on the order of 1nm.

  20. Strain-dependent permeability of volcanic rocks.

    NASA Astrophysics Data System (ADS)

    Farquharson, Jamie; Heap, Michael; Baud, Patrick

    2016-04-01

    We explore permeability evolution during deformation of volcanic materials using a suite of rocks with varying compositions and physical properties (such as porosity ϕ). 40 mm × 20 mm cylindrical samples were made from a range of extrusive rocks, including andesites from Colima, Mexico (ϕ˜0.08; 0.18; 0.21), Kumamoto, Japan (ϕ˜0.13), and Ruapehu, New Zealand (ϕ˜0.15), and basalt from Mt Etna, Italy (ϕ˜0.04). Gas permeability of each sample was measured before and after triaxial deformation using a steady-state benchtop permeameter. To study the strain-dependence of permeability in volcanic rocks, we deformed samples to 2, 3, 4, 6, and 12 % axial strain at a constant strain rate of 10‑5 s‑1. Further, the influence of failure mode - dilatant or compactant - on permeability was assessed by repeating experiments at different confining pressures. During triaxial deformation, porosity change of the samples was monitored by a servo-controlled pore fluid pump. Below an initial porosity of ˜0.18, and at low confining pressures (≤ 20 MPa), we observe a dilatant failure mode (shear fracture formation). With increasing axial strain, stress is accommodated by fault sliding and the generation of ash-sized gouge between the fracture planes. In higher-porosity samples, or at relatively higher confining pressures (≥ 60 MPa), we observe compactant deformation characterised by a monotonous decrease in porosity with increasing axial strain. The relative permeability k' is given by the change in permeability divided by the initial reference state. When behaviour is dilatant, k' tends to be positive: permeability increases with progressive deformation. However, results suggest that after a threshold amount of strain, k' can decrease. k' always is negative (permeability decreases during deformation) when compaction is the dominant behaviour. Our results show that - in the absence of a sealing or healing process - the efficiency of a fault to transmit fluids is

  1. Motion Driven by Strain Gradient Fields

    PubMed Central

    Wang, Chao; Chen, Shaohua

    2015-01-01

    A new driving mechanism for direction-controlled motion of nano-scale objects is proposed, based on a model of stretching a graphene strip linked to a rigid base with linear springs of identical stiffness. We find that the potential energy difference induced by the strain gradient field in the graphene strip substrate can generate sufficient force to overcome the static and kinetic friction forces between the nano-flake and the strip substrate, resulting in the nanoscale flake motion in the direction of gradient reduction. The dynamics of the nano-flake can be manipulated by tuning the stiffness of linear springs, stretching velocity and the flake size. This fundamental law of directional motion induced by strain gradient could be very useful for promising designs of nanoscale manipulation, transportation and smart surfaces. PMID:26323603

  2. Benchmark cyclic plastic notch strain measurements

    NASA Technical Reports Server (NTRS)

    Sharpe, W. N., Jr.; Ward, M.

    1983-01-01

    Plastic strains at the roots of notched specimens of Inconel 718 subjected to tension-compression cycling at 650 C are reported. These strains were measured with a laser-based technique over a gage length of 0.1 mm and are intended to serve as 'benchmark' data for further development of experimental, analytical, and computational approaches. The specimens were 250 mm by 2.5 mm in the test section with double notches of 4.9 mm radius subjected to axial loading sufficient to cause yielding at the notch root on the tensile portion of the first cycle. The tests were run for 1000 cycles at 10 cpm or until cracks initiated at the notch root. The experimental techniques are described, and then representative data for the various load spectra are presented. All the data for each cycle of every test are available on floppy disks from NASA.

  3. Uniform strain may cause eastern quakes

    NASA Astrophysics Data System (ADS)

    Katzoff, Judith A.

    Recent measurements made with very long baseline interferometry (VLBI) have revealed a compression of the eastern part of the United States that could provide more than a sufficient amount of strain energy to account for all of the earthquakes that occur there. Steven A. Musman of the National Geodetic Survey in Rockville, Md., and Tom Schmitt of the Georgia Geologic Survey in Atlanta will discuss these findings on Tuesday, May 20, at the 1986 AGU Spring Meeting in Baltimore, Md.Recent measurements made with very long baseline interferometry (VLBI) have revealed a compression of the eastern part of the United States that could provide more than a sufficient amount of strain energy to account for all of the earthquakes that occur there. Steven A. Musman of the National Geodetic Survey in Rockville, Md., and Tom Schmitt of the Georgia Geologic Survey in Atlanta will discuss these findings on Tuesday, May 20, at the 1986 AGU Spring Meeting in Baltimore, Md.

  4. Designing recombinant Pseudomonas strains to enhance biodesulfurization.

    PubMed Central

    Gallardo, M E; Ferrández, A; De Lorenzo, V; García, J L; Díaz, E

    1997-01-01

    The dsz biodesulfurization cluster from Rhodococcus erythropolis IGTS8 has been engineered under the control of heterologous broad-host-range regulatory signals to alleviate the mechanism of sulfur repression, and it was stably inserted into the chromosomes of different Pseudomonas strains. The recombinant bacteria were able to desulfurize dibenzothiophene more efficiently than the native host. Furthermore, these new biocatalysts combine relevant industrial and environmental traits, such as production of biosurfactants, with the enhanced biodesulfurization phenotype. PMID:9371464

  5. Strain monitoring averts line failure in Rockies

    SciTech Connect

    Miller, B.; Bukovansky, M.

    1987-08-10

    The case history of a landslide in the U.S. Rocky Mountains shows that the potential for pipeline monitoring in geologically sensitive areas, those subject to landslides and subsidence, for example. A properly installed monitoring system monitored by the pipeline operator, Western Gas Supply Co. (West Gas), Denver, provided an early warning of increasing line strains. The problem was complicated by rugged topography which is described here. Stability analysis was the key technique utilized in the process.

  6. Gurson's Model: ALE Formulation and Strain Localization

    SciTech Connect

    Cunda, Luiz A. B. da; Creus, Guillermo J.

    2007-05-17

    This paper presents a brief review of Gurson's damage model, employed to describes the strength degradation in ductile metals submitted to large plastic deformations. The damage model is applied using finite elements and an Arbitrary Lagrangian-Eulerian formulation (ALE), to ensure a better quality to the finite elements mesh. The study of the combined application of ALE and Gurson approach to damage modeling and strain localization is the object of this paper.

  7. Quasi-bound states in strained graphene

    NASA Astrophysics Data System (ADS)

    Bahamon, Dario; Qi, Zenan; Park, Harold; Pareira, Vitor; Campbell, David

    In this work, we explore the possibility of manipulating electronic states in graphene nanostructures by mechanical means. Specifically, we use molecular dynamics and tight-binding models to access the electronic and transport properties of strained graphene nanobubbles and graphene kirigami. We establish that low energy electrons can be confined in the arms of the kirigami and within the nanobubbles; under different load conditions the coupling between confined states and continuous states is modified creating different conductance line-shapes.

  8. Bioprocessing of Stichococcus bacillaris strain siva2011

    PubMed Central

    2014-01-01

    Background Globally, the development of a cost-effective long-term renewable energy infrastructure is one of the most challenging problems faced by society today. Microalgae are rich in potential biofuel substrates such as lipids, including triacylglycerols (TAGs). Some of these algae also biosynthesize small molecule hydrocarbons. These hydrocarbons can often be used as liquid fuels, often with more versatility and by a more direct approach than some TAGs. However, the appropriate TAGs, accumulated from microalgae biomass, can be used as substrates for different kinds of renewable liquid fuels such as biodiesel and jet fuel. Results This article describes the isolation and identification of a lipid-rich, hydrocarbon-producing alga, Stichococcus bacillaris strain siva2011, together with its bioprocessing, hydrocarbon and fatty acid methyl ester (FAME) profiles. The S. bacillaris strain siva2011 was scaled-up in an 8 L bioreactor with 0.2% CO2. The C16:0, C16:3, C18:1, C18:2 and C18:3 were 112.2, 9.4, 51.3, 74.1 and 69.2 mg/g dry weight (DW), respectively. This new strain produced a significant amount of biomass of 3.79 g/L DW on day 6 in the 8 L bioreactor and also produced three hydrocarbons. Conclusions A new oil-rich microalga S. bacillaris strain siva2011 was discovered and its biomass has been scaled-up in a newly designed balloon-type bioreactor. The TAGs and hydrocarbons produced by this organism could be used as substrates for jet fuel or biodiesel. PMID:24731690

  9. Small Fixture Strains Composites for Environmental Tests

    NASA Technical Reports Server (NTRS)

    Tervet, F. W.

    1982-01-01

    Fixture for long-term strain tests of composites is based on inexpensive tool for repairing motorcycle chains. (In normal use tool forces rivet out of chain element.) As modified for composite testing, tool has precision screw and shim. Qualification tests for graphite/epoxy composites are made less expensive by simple test fixture. Used in quantity, fixtures apply precisely similar loads to many samples.

  10. Electrochemical strain microscopy of silica glasses

    NASA Astrophysics Data System (ADS)

    Proksch, R.

    2014-08-01

    Piezoresponse Force Microscopy and Electrochemical Strain Microscopy (ESM) are two related techniques that have had considerable success in nano-scale probing of functional material properties. Both measure the strain of the sample in response to a localized electric field beneath a sharp conductive tip. In this work, a collection of commercially available glass samples were measured with a variety of Si cantilevers coated with different conductive metals. In some cases, these glasses showed significant hysteresis loops, similar in appearance to those measured on ferroelectric materials with spontaneous permanent electric dipoles. The magnitude of the electrochemical strain and hysteresis correlated well with the molar percentage of sodium in the glass material, with high sodium (soda-lime) glass showing large hysteresis and fused silica (pure SiO2) showing essentially no hysteresis. The "elephant-ear" shape of the hysteresis loops correlated well with it originating from relaxation behavior—an interpretation verified by observing the temperature dependent relaxation of the ESM response. Cation mobility in a disordered glass should have a low diffusion constant. To evaluate this diffusion constant, the temperature of the glass was varied between room temperature to ˜200 °C. Vanishing hysteresis as the temperature increased was associated with a decrease in the relaxation time of the electrochemical response. The hysteretic behavior changed drastically in this temperature range, consistent with bound surface water playing a large role in the relaxation. This demonstrates the ability of ESM to differentiate cationic concentrations in a range of silica glasses. In addition, since glass is a common sample substrate for, this provides some clear guidance for avoiding unwanted substrate crosstalk effects in piezoresponse and electrochemical strain response measurements.

  11. Canthaxanthin production with modified Mucor circinelloides strains.

    PubMed

    Papp, Tamás; Csernetics, Arpád; Nagy, Gábor; Bencsik, Ottó; Iturriaga, Enrique A; Eslava, Arturo P; Vágvölgyi, Csaba

    2013-06-01

    Canthaxanthin is a natural diketo derivative of β-carotene primarily used by the food and feed industries. Mucor circinelloides is a β-carotene-accumulating zygomycete fungus and one of the model organisms to study the carotenoid biosynthesis in fungi. In this study, the β-carotene ketolase gene (crtW) of the marine bacterium Paracoccus sp. N81106 fused with fungal promoter and terminator regions was integrated into the M. circinelloides genome to construct stable canthaxanthin-producing strains. Different transformation methods including polyethylene glycol-mediated transformation with linear DNA fragments, restriction enzyme-mediated integration and Agrobacterium tumefaciens-mediated transformation were tested to integrate the crtW gene into the Mucor genome. Mitotic stability, site of integration and copy number of the transferred genes were analysed in the transformants, and several stable strains containing the crtW gene in high copy number were isolated. Carotenoid composition of selected transformants and effect of culturing conditions, such as temperature, carbon sources and application of certain additives in the culturing media, on their carotenoid content were analysed. Canthaxanthin-producing transformants were able to survive at higher growth temperature than the untransformed strain, maybe due to the effect of canthaxanthin on the membrane fluidity and integrity. With the application of glucose, trehalose, dihydroxyacetone and L-aspartic acid as sole carbon sources in minimal medium, the crtW-expressing M. circinelloides strain, MS12+pCA8lf/1, produced more than 200 μg/g (dry mass) of canthaxanthin. PMID:23224586

  12. Rectus abdominis muscle strains in tennis players.

    PubMed

    Maquirriain, Javier; Ghisi, Juan P; Kokalj, Antonio M

    2007-11-01

    Rectus abdominis muscle strains are common and debilitating injuries among competitive tennis players. Eccentric overload, followed by forced contraction of the non-dominant rectus abdominis during the cocking phase of the service motion is the accepted injury mechanism. A tennis-specific rehabilitation program emphasising eccentrics and plyometric strengthening of the abdominal wall muscles, contributes to the complete functional recovery in tennis players, and could help reduce recurrences. PMID:17957025

  13. Rectus abdominis muscle strains in tennis players

    PubMed Central

    Maquirriain, Javier; Ghisi, Juan P; Kokalj, Antonio M

    2007-01-01

    Rectus abdominis muscle strains are common and debilitating injuries among competitive tennis players. Eccentric overload, followed by forced contraction of the non‐dominant rectus abdominis during the cocking phase of the service motion is the accepted injury mechanism. A tennis‐specific rehabilitation program emphasising eccentrics and plyometric strengthening of the abdominal wall muscles, contributes to the complete functional recovery in tennis players, and could help reduce recurrences. PMID:17957025

  14. Wing Shape Sensing from Measured Strain

    NASA Technical Reports Server (NTRS)

    Pak, Chan-Gi

    2015-01-01

    A new two-step theory is investigated for predicting the deflection and slope of an entire structure using strain measurements at discrete locations. In the first step, a measured strain is fitted using a piecewise least-squares curve fitting method together with the cubic spline technique. These fitted strains are integrated twice to obtain deflection data along the fibers. In the second step, computed deflection along the fibers are combined with a finite element model of the structure in order to interpolate and extrapolate the deflection and slope of the entire structure through the use of the System Equivalent Reduction and Expansion Process. The theory is first validated on a computational model, a cantilevered rectangular plate wing. The theory is then applied to test data from a cantilevered swept-plate wing model. Computed results are compared with finite element results, results using another strain-based method, and photogrammetry data. For the computational model under an aeroelastic load, maximum deflection errors in the fore and aft, lateral, and vertical directions are -3.2 percent, 0.28 percent, and 0.09 percent, respectively; and maximum slope errors in roll and pitch directions are 0.28 percent and -3.2 percent, respectively. For the experimental model, deflection results at the tip are shown to be accurate to within 3.8 percent of the photogrammetry data and are accurate to within 2.2 percent in most cases. In general, excellent matching between target and computed values are accomplished in this study. Future refinement of this theory will allow it to monitor the deflection and health of an entire aircraft in real time, allowing for aerodynamic load computation, active flexible motion control, and active induced drag reduction..

  15. Himalayan Strain Accumulation 100 ka Timescales

    NASA Astrophysics Data System (ADS)

    Cannon, J. M.; Murphy, M. A.; Liu, Y.

    2015-12-01

    Crustal scale fault systems and tectonostratigraphic units in the Himalaya can be traced for 2500 km along strike. However regional studies have shown that there is variability in the location and rate of strain accumulation which appears to be driven by Main Himalayan Thrust (MHT) geometry and convergence obliquity. GPS illuminates the modern interseismic strain rate and the historical record of great earthquakes elucidates variations in strain accumulation over 103 years. To connect these patterns with the 106 year structural and thermochronometric geologic record we examine normalized river channel steepness (ksn), a proxy for rock uplift rate, which develops over 104 - 105 years. Here we present a ksn map of the Himalaya and compare it with bedrock geology, precipitation, the historic earthquake record, GPS, seismicity, and seismotectonic models. Our map shows significant along strike changes in the magnitude of channel steepness, the areal extent of swaths of high ksn channels, and their location with respect to the range front. Differences include the juxtaposition of two narrow (30 - 40 km) range parallel belts of high ksn in west Nepal and Bhutan coincident with MHT duplexes and belts of microseismcity, with a single broad (70 km) swath of high ksn and microseismicity in central and eastern Nepal. Separating west and central Nepal a band of low ksn crosses the range coincident with the West Nepal Fault (WNF) and the lowest rate of microseismicity in Nepal. To the west the orogen is obliquely convergent and has less high ksn channels, while the orthogonally convergent region to the east contains the highest concentration of oversteepened channels in the Himalaya supporting the idea that the WNF is a strain partitioning boundary. The syntaxes are characterized by locally high channel steepness surrounded by low to moderate ksn channels consistent with the hypothesis that rapid exhumation within the syntaxes is sustained by an influx of lower crust.

  16. Quantum oscillations in strained-layer superlattices

    SciTech Connect

    Schirber, J.E.; Fritz, I.J.; Dawson, L.R.; Osbourn, G.C.

    1983-08-15

    Large-amplitude quantum oscillations are observed in the magnetotransport in GaAs-Ga/sub 0.8/In/sub 0.2/As strained-layer superlattices. These measurements demonstrate that single-crystal perfection and high mobilities at low temperatures can be achieved in a new class of semiconductor structures. The properties of these structures can be tailored easily over a wide range inaccessible to naturally occurring lattice-matched heterostructures.

  17. Strain-tolerant ceramic coated seal

    DOEpatents

    Schienle, James L.; Strangman, Thomas E.

    1994-01-01

    A metallic regenerator seal is provided having multi-layer coating comprising a NiCrAlY bond layer, a yttria stabilized zirconia (YSZ) intermediate layer, and a ceramic high temperature solid lubricant surface layer comprising zinc oxide, calcium fluoride, and tin oxide. An array of discontinuous grooves is laser machined into the outer surface of the solid lubricant surface layer making the coating strain tolerant.

  18. Deformation twinning: Influence of strain rate

    SciTech Connect

    Gray, G.T. III

    1993-11-01

    Twins in most crystal structures, including advanced materials such as intermetallics, form more readily as the temperature of deformation is decreased or the rate of deformation is increased. Both parameters lead to the suppression of thermally-activated dislocation processes which can result in stresses high enough to nucleate and grow deformation twins. Under high-strain rate or shock-loading/impact conditions deformation twinning is observed to be promoted even in high stacking fault energy FCC metals and alloys, composites, and ordered intermetallics which normally do not readily deform via twinning. Under such conditions and in particular under the extreme loading rates typical of shock wave deformation the competition between slip and deformation twinning can be examined in detail. In this paper, examples of deformation twinning in the intermetallics TiAl, Ti-48Al-lV and Ni{sub 3}A as well in the cermet Al-B{sub 4}C as a function of strain rate will be presented. Discussion includes: (1) the microstructural and experimental variables influencing twin formation in these systems and twinning topics related to high-strain-rate loading, (2) the high velocity of twin formation, and (3) the influence of deformation twinning on the constitutive response of advanced materials.

  19. Spherical nanoindentation stress–strain curves

    DOE PAGESBeta

    Pathak, Siddhartha; Kalidindi, Surya R.

    2015-03-24

    Although indentation experiments have long been used to measure the hardness and Young's modulus, the utility of this technique in analyzing the complete elastic–plastic response of materials under contact loading has only been realized in the past few years – mostly due to recent advances in testing equipment and analysis protocols. This paper provides a timely review of the recent progress made in this respect in extracting meaningful indentation stress–strain curves from the raw datasets measured in instrumented spherical nanoindentation experiments. These indentation stress–strain curves have produced highly reliable estimates of the indentation modulus and the indentation yield strength inmore » the sample, as well as certain aspects of their post-yield behavior, and have been critically validated through numerical simulations using finite element models as well as direct in situ scanning electron microscopy (SEM) measurements on micro-pillars. Much of this recent progress was made possible through the introduction of a new measure of indentation strain and the development of new protocols to locate the effective zero-point of initial contact between the indenter and the sample in the measured datasets. As a result, this has led to an important key advance in this field where it is now possible to reliably identify and analyze the initial loading segment in the indentation experiments.« less

  20. Models for elastic shells with incompatible strains

    PubMed Central

    Lewicka, Marta; Mahadevan, L.; Pakzad, Mohammad Reza

    2014-01-01

    The three-dimensional shapes of thin lamina, such as leaves, flowers, feathers, wings, etc., are driven by the differential strain induced by the relative growth. The growth takes place through variations in the Riemannian metric given on the thin sheet as a function of location in the central plane and also across its thickness. The shape is then a consequence of elastic energy minimization on the frustrated geometrical object. Here, we provide a rigorous derivation of the asymptotic theories for shapes of residually strained thin lamina with non-trivial curvatures, i.e. growing elastic shells in both the weakly and strongly curved regimes, generalizing earlier results for the growth of nominally flat plates. The different theories are distinguished by the scaling of the mid-surface curvature relative to the inverse thickness and growth strain, and also allow us to generalize the classical Föppl–von Kármán energy to theories of prestrained shallow shells. PMID:24808750

  1. Revealing Invisible Photonic Inscriptions: Images from Strain.

    PubMed

    Ding, Tao; Cao, Guoshuai; Schäfer, Christian G; Zhao, Qibin; Gallei, Markus; Smoukov, Stoyan K; Baumberg, Jeremy J

    2015-06-24

    Photonic structural materials have received intensive interest and have been strongly developed over the past few years for image displays, sensing, and anticounterfeit materials. Their "smartness" arises from their color responsivity to changes of environment, strain, or external fields. Here, we introduce a novel invisible photonic system that reveals encrypted images or characters by simply stretching, or immersing in solvents. This type of intriguing photonic material is composed of regularly arranged core-shell particles that are selectively cross-linked by UV irradiation, giving different strain response compared to un-cross-linked regions. The images reversibly appear and disappear when cycling the strain and releasing it. The unique advantages of this soft polymer opal system compared with other types of photonic gels are that it can be produced in roll to roll quantities, can be vigorously deformed to achieve strong color changes, and has no solvent evaporation issues because it is a photonic rubber system. We demonstrate potential applications together with a fabrication procedure which is straightforward and scalable, vital for user take-up. Our work deepens understanding of this rubbery photonic system based on core-shell nanospheres. PMID:26039279

  2. Spherical nanoindentation stress–strain curves

    SciTech Connect

    Pathak, Siddhartha; Kalidindi, Surya R.

    2015-03-24

    Although indentation experiments have long been used to measure the hardness and Young's modulus, the utility of this technique in analyzing the complete elastic–plastic response of materials under contact loading has only been realized in the past few years – mostly due to recent advances in testing equipment and analysis protocols. This paper provides a timely review of the recent progress made in this respect in extracting meaningful indentation stress–strain curves from the raw datasets measured in instrumented spherical nanoindentation experiments. These indentation stress–strain curves have produced highly reliable estimates of the indentation modulus and the indentation yield strength in the sample, as well as certain aspects of their post-yield behavior, and have been critically validated through numerical simulations using finite element models as well as direct in situ scanning electron microscopy (SEM) measurements on micro-pillars. Much of this recent progress was made possible through the introduction of a new measure of indentation strain and the development of new protocols to locate the effective zero-point of initial contact between the indenter and the sample in the measured datasets. As a result, this has led to an important key advance in this field where it is now possible to reliably identify and analyze the initial loading segment in the indentation experiments.

  3. Strain Variation in Mycobacterium marinum Fish Isolates

    PubMed Central

    Ucko, M.; Colorni, A.; Kvitt, H.; Diamant, A.; Zlotkin, A.; Knibb, W. R.

    2002-01-01

    A molecular characterization of two Mycobacterium marinum genes, 16S rRNA and hsp65, was carried out with a total of 21 isolates from various species of fish from both marine and freshwater environments of Israel, Europe, and the Far East. The nucleotide sequences of both genes revealed that all M. marinum isolates from fish in Israel belonged to two different strains, one infecting marine (cultured and wild) fish and the other infecting freshwater (cultured) fish. A restriction enzyme map based on the nucleotide sequences of both genes confirmed the divergence of the Israeli marine isolates from the freshwater isolates and differentiated the Israeli isolates from the foreign isolates, with the exception of one of three Greek isolates from marine fish which was identical to the Israeli marine isolates. The second isolate from Greece exhibited a single base alteration in the 16S rRNA sequence, whereas the third isolate was most likely a new Mycobacterium species. Isolates from Denmark and Thailand shared high sequence homology to complete identity with reference strain ATCC 927. Combined analysis of the two gene sequences increased the detection of intraspecific variations and was thus of importance in studying the taxonomy and epidemiology of this aquatic pathogen. Whether the Israeli M. marinum strain infecting marine fish is endemic to the Red Sea and found extremely susceptible hosts in the exotic species imported for aquaculture or rather was accidentally introduced with occasional imports of fingerlings from the Mediterranean Sea could not be determined. PMID:12406715

  4. Proteome variation among Filifactor alocis strains

    PubMed Central

    Aruni, A. Wilson; Roy, Francis; Sandberg, Lawrence; Fletcher, Hansel M.

    2015-01-01

    Filifactor alocis, a Gram-positive anaerobic rod, is now considered one of the marker organisms associated with periodontal disease. Although there was heterogeneity in its virulence potential, this bacterium was shown to have virulence properties that may enhance its ability to survive and persist in the periodontal pocket. To gain further insight into a possible mechanism(s) of pathogenesis, the proteome of F. alocis strains was evaluated. Proteins including several proteases, neutrophil-activating protein A and calcium-binding acid repeat protein, were identified in F. alocis. During the invasion of HeLa cells, there was increased expression of several of the genes encoding these proteins in the potentially more virulent F. alocis D-62D compared to F. alocis ATCC 35896, the type strain. A comparative protein in silico analysis of the proteome revealed more cell wall anchoring proteins in the F. alocis D-62D compared to F. alocis ATCC 35896. Their expression was enhanced by coinfection with Porphyromonas gingivalis. Taken together, the variation in the pathogenic potential of the F. alocis strains may be related to the differential expression of several putative virulence factors. PMID:23008013

  5. Strain Functionals for Characterizing Atomistic Geometries

    NASA Astrophysics Data System (ADS)

    Kober, Edward; Rudin, Sven

    The development of a set of strain tensor functionals that are capable of characterizing arbitrarily ordered atomistic structures is described. This approach defines a Gaussian-weighted neighborhood around each atom and characterizes that local geometry in terms of n-th order strain tensors, which are equivalent to the moments of the neighborhood. Fourth order expansions can distinguish the cubic structures (and deformations thereof), but sixth order expansions are required to fully characterize hexagonal structures. Other methods used to characterize atomic structures, such as the Steinhardt parameters or the centrosymmetry metric, can be derived from this more general approach. These functions are continuous and smooth and much less sensitive to thermal fluctuations than other descriptors based on discrete neighborhoods. They allow material phases, deformations, and a large number of defect structures to be readily identified and classified. Applications to the analysis of shock-loaded samples of Cu, Ta and Ti will be presented. This strain functional basis can also then be used for developing interatomic potential functions, and an initial application to Cu will be presented.

  6. Dislocation Multi-junctions and Strain Hardening

    SciTech Connect

    Bulatov, V; Hsiung, L; Tang, M; Arsenlis, A; Bartelt, M; Cai, W; Florando, J; Hiratani, M; Rhee, M; Hommes, G; Pierce, T; Diaz de la Rubia, T

    2006-06-20

    At the microscopic scale, the strength of a crystal derives from the motion, multiplication and interaction of distinctive line defects--dislocations. First theorized in 1934 to explain low magnitudes of crystal strength observed experimentally, the existence of dislocations was confirmed only two decades later. Much of the research in dislocation physics has since focused on dislocation interactions and their role in strain hardening: a common phenomenon in which continued deformation increases a crystal's strength. The existing theory relates strain hardening to pair-wise dislocation reactions in which two intersecting dislocations form junctions tying dislocations together. Here we report that interactions among three dislocations result in the formation of unusual elements of dislocation network topology, termed hereafter multi-junctions. The existence of multi-junctions is first predicted by Dislocation Dynamics (DD) and atomistic simulations and then confirmed by the transmission electron microscopy (TEM) experiments in single crystal molybdenum. In large-scale Dislocation Dynamics simulations, multi-junctions present very strong, nearly indestructible, obstacles to dislocation motion and furnish new sources for dislocation multiplication thereby playing an essential role in the evolution of dislocation microstructure and strength of deforming crystals. Simulation analyses conclude that multi-junctions are responsible for the strong orientation dependence of strain hardening in BCC crystals.

  7. Advanced high temperature static strain sensor development

    NASA Technical Reports Server (NTRS)

    Hulse, C. O.; Stetson, K. A.; Grant, H. P.; Jameikis, S. M.; Morey, W. W.; Raymondo, P.; Grudkowski, T. W.; Bailey, R. S.

    1986-01-01

    An examination was made into various techniques to be used to measure static strain in gas turbine liners at temperatures up to 1150 K (1600 F). The methods evaluated included thin film and wire resistive devices, optical fibers, surface acoustic waves, the laser speckle technique with a heterodyne readout, optical surface image and reflective approaches and capacitive devices. A preliminary experimental program to develop a thin film capacitive device was dropped because calculations showed that it would be too sensitive to thermal gradients. In a final evaluation program, the laser speckle technique appeared to work well up to 1150 K when it was used through a relatively stagnant air path. The surface guided acoustic wave approach appeared to be interesting but to require too much development effort for the funds available. Efforts to develop a FeCrAl resistive strain gage system were only partially successful and this part of the effort was finally reduced to a characterization study of the properties of the 25 micron diameter FeCrAl (Kanthal A-1) wire. It was concluded that this particular alloy was not suitable for use as the resistive element in a strain gage above about 1000 K.

  8. Dialysis culture of T-strain mycoplasmas.

    PubMed

    Masover, G K; Hayflick, L

    1974-04-01

    Using dialyzing cultures of T-strain mycoplasmas, it was possible to make some observations relevant to the growth and metabolism of these organisms which would not be possible in nondialyzing cultures due to growth inhibition of the organisms by elevated pH and increased ammonium ion concentration in media containing urea. The rate of ammonia accumulation was found to be related to the initial urea concentration in the medium and could not be accounted for by any change in the multiplication rate of the organisms. More ammonia was generated than could be accounted for by the added urea alone, suggesting that an ammonia-producing activity other than urease may be present in T-strain mycoplasmas. Titers above 10(7) color change units per ml were achieved in dialysis cultures of a T-strain mycoplasma in the presence of urea, and such titers were maintained for approximately 60 h during dialysis culture in the absence of added urea. PMID:4595203

  9. High Strain Rate Behavior of Polyurea Compositions

    NASA Astrophysics Data System (ADS)

    Joshi, Vasant; Milby, Christopher

    2011-06-01

    Polyurea has been gaining importance in recent years due to its impact resistance properties. The actual compositions of this viscoelastic material must be tailored for specific use. It is therefore imperative to study the effect of variations in composition on the properties of the material. High-strain-rate response of three polyurea compositions with varying molecular weights has been investigated using a Split Hopkinson Pressure Bar arrangement equipped with titanium bars. The polyurea compositions were synthesized from polyamines (Versalink, Air Products) with a multi-functional isocyanate (Isonate 143L, Dow Chemical). Amines with molecular weights of 1000, 650, and a blend of 250/1000 have been used in the current investigation. The materials have been tested up to strain rates of 6000/s. Results from these tests have shown interesting trends on the high rate behavior. While higher molecular weight composition show lower yield, they do not show dominant hardening behavior. On the other hand, the blend of 250/1000 show higher load bearing capability but lower strain hardening effects than the 600 and 1000 molecular weight amine based materials. Refinement in experimental methods and comparison of results using aluminum Split Hopkinson Bar is presented.

  10. Acceleration and Velocity Sensing from Measured Strain

    NASA Technical Reports Server (NTRS)

    Pak, Chan-Gi; Truax, Roger

    2015-01-01

    A simple approach for computing acceleration and velocity of a structure from the strain is proposed in this study. First, deflection and slope of the structure are computed from the strain using a two-step theory. Frequencies of the structure are computed from the time histories of strain using a parameter estimation technique together with an autoregressive moving average model. From deflection, slope, and frequencies of the structure, acceleration and velocity of the structure can be obtained using the proposed approach. Simple harmonic motion is assumed for the acceleration computations, and the central difference equation with a linear autoregressive model is used for the computations of velocity. A cantilevered rectangular wing model is used to validate the simple approach. Quality of the computed deflection, acceleration, and velocity values are independent of the number of fibers. The central difference equation with a linear autoregressive model proposed in this study follows the target response with reasonable accuracy. Therefore, the handicap of the backward difference equation, phase shift, is successfully overcome.

  11. Strain sensors for high field pulse magnets

    SciTech Connect

    Martinez, Christian; Zheng, Yan; Easton, Daniel; Farinholt, Kevin M; Park, Gyuhae

    2009-01-01

    In this paper we present an investigation into several strain sensing technologies that are being considered to monitor mechanical deformation within the steel reinforcement shells used in high field pulsed magnets. Such systems generally operate at cryogenic temperatures to mitigate heating issues that are inherent in the coils of nondestructive, high field pulsed magnets. The objective of this preliminary study is to characterize the performance of various strain sensing technologies at liquid nitrogen temperatures (-196 C). Four sensor types are considered in this investigation: fiber Bragg gratings (FBG), resistive foil strain gauges (RFSG), piezoelectric polymers (PVDF), and piezoceramics (PZT). Three operational conditions are considered for each sensor: bond integrity, sensitivity as a function of temperature, and thermal cycling effects. Several experiments were conducted as part of this study, investigating adhesion with various substrate materials (stainless steel, aluminum, and carbon fiber), sensitivity to static (FBG and RFSG) and dynamic (RFSG, PVDF and PZT) load conditions, and sensor diagnostics using PZT sensors. This work has been conducted in collaboration with the National High Magnetic Field Laboratory (NHMFL), and the results of this study will be used to identify the set of sensing technologies that would be best suited for integration within high field pulsed magnets at the NHMFL facility.

  12. Revealing Invisible Photonic Inscriptions: Images from Strain

    PubMed Central

    2015-01-01

    Photonic structural materials have received intensive interest and have been strongly developed over the past few years for image displays, sensing, and anticounterfeit materials. Their “smartness” arises from their color responsivity to changes of environment, strain, or external fields. Here, we introduce a novel invisible photonic system that reveals encrypted images or characters by simply stretching, or immersing in solvents. This type of intriguing photonic material is composed of regularly arranged core–shell particles that are selectively cross-linked by UV irradiation, giving different strain response compared to un-cross-linked regions. The images reversibly appear and disappear when cycling the strain and releasing it. The unique advantages of this soft polymer opal system compared with other types of photonic gels are that it can be produced in roll to roll quantities, can be vigorously deformed to achieve strong color changes, and has no solvent evaporation issues because it is a photonic rubber system. We demonstrate potential applications together with a fabrication procedure which is straightforward and scalable, vital for user take-up. Our work deepens understanding of this rubbery photonic system based on core–shell nanospheres. PMID:26039279

  13. Electronic structure and optic absorption of phosphorene under strain

    NASA Astrophysics Data System (ADS)

    Duan, Houjian; Yang, Mou; Wang, Ruiqiang

    2016-07-01

    We studied the electronic structure and optic absorption of phosphorene (monolayer of black phosphorus) under strain. Strain was found to be a powerful tool for the band structure engineering. The in-plane strain in armchair or zigzag direction changes the effective mass components along both directions, while the vertical strain only has significant effect on the effective mass in the armchair direction. The band gap is narrowed by compressive in-plane strain and tensile vertical strain. Under certain strain configurations, the gap is closed and the energy band evolves to the semi-Dirac type: the dispersion is linear in the armchair direction and is gapless quadratic in the zigzag direction. The band-edge optic absorption is completely polarized along the armchair direction, and the polarization rate is reduced when the photon energy increases. Strain not only changes the absorption edge (the smallest photon energy for electron transition), but also the absorption polarization.

  14. Strain gage network distinguishes between thermal and mechanical deformations

    NASA Technical Reports Server (NTRS)

    Cepollina, F. J.

    1966-01-01

    Strain gage network measures the thermal coefficient of linear expansion of composite metal structures. The network consists of a test gage and two dummy gages arranged to distinguish thermally induced deformation from mechanical strain.

  15. Genome Sequence of the Immunomodulatory Strain Bifidobacterium bifidum LMG 13195

    PubMed Central

    Gueimonde, Miguel; Ventura, Marco; Margolles, Abelardo

    2012-01-01

    In this work, we report the genome sequences of Bifidobacterium bifidum strain LMG13195. Results from our research group show that this strain is able to interact with human immune cells, generating functional regulatory T cells. PMID:23209243

  16. Strain gauge sensitivity improved by using a composite beam

    NASA Technical Reports Server (NTRS)

    Silver, R. H.; Kalfayan, S. H.

    1975-01-01

    Composite beam connected to strain gauge and mounted on test specimen is capable of amplifying small strains by factor of 10. Tests indicate that resulting output can be 10 times greater than standard method.

  17. Introducing lattice strain to graphene encapsulated in hBN

    NASA Astrophysics Data System (ADS)

    Tomori, Hikari; Hiraide, Rineka; Ootuka, Youiti; Watanabe, Kenji; Taniguchi, Takashi; Kanda, Akinobu

    Due to the characteristic lattice structure, lattice strain in graphene produces an effective gauge field. Theories tell that by controlling spatial variation of lattice strain, one can tailor the electronic state and transport properties of graphene. For example, under uniaxial local strain, graphene exhibits a transport gap at low energies, which is attractive for a graphene application to field effect devices. Here, we develop a method for encapsulating a strained graphene film in hexagonal boron-nitride (hBN). It is known that the graphene carrier mobility is significantly improved by the encapsulation of graphene in hBN, which has never been applied to strained graphene. We encapsulate graphene in hBN using the van der Waals assembly method. Strain is induced by sandwiching a graphene film between patterned hBN sheets. Spatial variation of strain is confirmed with micro Raman spectroscopy. Transport measurement of encapsulated strained graphene is in progress.

  18. Whole Genome Analysis of a Wine Yeast Strain

    PubMed Central

    Hauser, Nicole C.; Fellenberg, Kurt; Gil, Rosario; Bastuck, Sonja; Hoheisel, Jörg D.

    2001-01-01

    Saccharomyces cerevisiae strains frequently exhibit rather specific phenotypic features needed for adaptation to a special environment. Wine yeast strains are able to ferment musts, for example, while other industrial or laboratory strains fail to do so. The genetic differences that characterize wine yeast strains are poorly understood, however. As a first search of genetic differences between wine and laboratory strains, we performed DNA-array analyses on the typical wine yeast strain T73 and the standard laboratory background in S288c. Our analysis shows that even under normal conditions, logarithmic growth in YPD medium, the two strains have expression patterns that differ significantly in more than 40 genes. Subsequent studies indicated that these differences correlate with small changes in promoter regions or variations in gene copy number. Blotting copy numbers vs. transcript levels produced patterns, which were specific for the individual strains and could be used for a characterization of unknown samples. PMID:18628902

  19. Strain limit dependence on stress triaxiality for pressure vessel steel

    NASA Astrophysics Data System (ADS)

    Deng, Y.-C.; Chen, G.; Yang, X.-F.; Xu, T.

    2009-08-01

    In this paper, the failure characteristics of pressure vessel materials were investigated, and measurement and analysis approaches for ductile fracture strains were studied. Based on uniaxial tensile tests of notched round bar specimens, combined with finite element analyses and microscopic observations of fracture surface, the relationships between the stress triaxiality factor and the ductile fracture strain are proposed for three typical Chinese pressure vessel steels, 16MnR, Q235 and 0Cr18Ni9. The comparison of experimental fracture strains with the multiaxial strain limit specified in ASME VIII-2 2007 shows that the strain limit criterion of ASME is suitable for carbon steels but not suitable for austenitic stainless steels for Chinese pressure vessel steels. To improve the calculation accuracy for fracture strain of materials and to develop the strain limit criterion for Chinese pressure vessel materials, more experimental studies and numerical analyses on fracture strain are necessary.

  20. Rhodococcus sp. strain TM1 plays a synergistic role in the degradation of piperidine by Mycobacterium sp. strain THO100.

    PubMed

    Kim, Yong-Hak; Kang, Un-Beom; Konishi, Kyoko; Lee, Cheolju

    2006-09-01

    Mycobacterium sp. strain THO100 and Rhodococcus sp. strain TM1 were isolated from a morpholine-containing enrichment culture of activated sewage sludge. Strain THO100, but not strain TM1, was able to degrade alicyclic amines such as morpholine, piperidine, and pyrrolidine. The mixed strains THO100 and TM1 showed a better growth on piperidine as the substrate than the pure strain THO100 because strain TM1 was able to reduce the level of glutaraldehyde (GA) produced during piperidine degradation. GA was toxic to strain THO100 (IC(50) = 28.3 microM) but less toxic to strain TM1 (IC(50) = 215 microM). Strain THO100 possessed constitutive semialdehyde dehydrogenases, namely Sad1 and Sad2, whose activities toward succinic semialdehyde (SSA) were strongly inhibited by GA. The two isozymes were identified as catalase-peroxidase (KatG = Sad1) and semialdehyde dehydrogenase (Sad2) based on mass spectrometric analyses of tryptic peptides and database searches of the partial DNA sequences of their genes. In contrast, strain TM1 containing another constitutive enzyme Gad1 could oxidize both SSA and GA. This study suggested that strain TM1 possessing Gad1 played a synergistic role in reducing the toxic and inhibitory effects of GA produced in the degradation of piperidine by strain THO100. PMID:16832627