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Sample records for alpha line profile

  1. The solar Ly-alpha line profile

    NASA Technical Reports Server (NTRS)

    Woods, Thomas N.; Rottman, Gary J.; White, O. R.; Fontenla, Juan; Avrett, E. H.

    1995-01-01

    Solar Ly-alpha irradiance measurements from the SOLar STellar Irradiance Comparison Experiment (SOLSTICE) on the Upper Atmosphere Research Satellite (UARS) have been made since 1991 October with a spectral resolution of 0.1 nm. The uniqueness of the small molecular oxygen cross section near Ly-alpha permits the Ly-alpha radiation to penetrate much deeper into the atmosphere than the other emissions near Ly-alpha. We have taken advantage of this phenomenon by performing solar occultation experiments near the Ly-alpha to evaluate precisely the instrument scattered light contribution. After correcting for scattered light, the broad wings of the solar Ly-alpha line can be extracted out to 5 nm from line center with a typical accuracy of +/-20%. The variability in the Ly-alpha wings near 2 nm from line center is about one-half that of the Ly-alpha core emission, defined within 0.1 nm from line center. These Ly-alpha profile measurements are found to be consistent with the Skylab radiance measurements and theoretical models of the Ly-alpha line profiles computed using partial redistribution of photons in the source function.

  2. Lyman Alpha Line Profile Observations from SORCE SOLSTICE

    NASA Astrophysics Data System (ADS)

    Snow, M. A.; Machol, J. L.; Woods, T. N.; Quemerais, E.; Gruyer, J.

    2015-12-01

    The SOLar-STellar Irradiance Comparison Experiment (SOLSTICE) on the SOlar Radiation and Climate Experiment (SORCE) makes daily measurements of the solar Lyman alpha profile with 0.1 nm spectral resolution. We will present analysis on how the shape of the line evolves over the solar cycle. For comparison, we have convolved observations from SUMER/SOHO with the SOLSTICE profile.

  3. Lyman alpha solar spectral irradiance line profile observations and models

    NASA Astrophysics Data System (ADS)

    Snow, Martin; Machol, Janet; Quemerais, Eric; Curdt, Werner; Kretschmar, Matthieu; Haberreiter, Margit

    2016-04-01

    Solar lyman alpha solar spectral irradiance measurements are available on a daily basis, but only the 1-nm integrated flux is typically published. The International Space Science Institute (ISSI) in Bern, Switzerland has sponsored a team to make higher spectral resolution data available to the community. Using a combination of SORCE/SOLSTICE and SOHO/SUMER observations plus empirical and semi-empirical modeling, we will produce a dataset of the line profile. Our poster will describe progress towards this goal.

  4. Alpha Virginis: line-profile variations and orbital elements

    NASA Astrophysics Data System (ADS)

    Harrington, David; Koenigsberger, Gloria; Olguín, Enrique; Ilyin, Ilya; Berdyugina, Svetlana V.; Lara, Bruno; Moreno, Edmundo

    2016-05-01

    Context. Alpha Virginis (Spica) is a B-type binary system whose proximity and brightness allow detailed investigations of the internal structure and evolution of stars undergoing time-variable tidal interactions. Previous studies have led to the conclusion that the internal structure of Spica's primary star may be more centrally condensed than predicted by theoretical models of single stars, raising the possibility that the interactions could lead to effects that are currently neglected in structure and evolution calculations. The key parameters in confirming this result are the values of the orbital eccentricity e, the apsidal period U, and the primary star's radius, R1. Aims: The aim of this paper is to analyze the impact that Spica's line profile variability has on the derivation of its orbital elements and to explore the use of the variability for constraining R1. Methods: We use high signal-to-noise and high spectral resolution observations obtained in 2000, 2008, and 2013 to derive the orbital elements from fits to the radial velocity curves. We produce synthetic line profiles using an ab initio tidal interaction model. Results: The general variations in the line profiles can be understood in terms of the tidal flows, whose large-scale structure is relatively fixed in the rotating binary system reference frame. Fits to the radial velocity curves yield e = 0.108 ± 0.014. However, the analogous RV curves from theoretical line profiles indicate that the distortion in the lines causes the fitted value of e to depend on the argument of periastron; i.e., on the epoch of observation. As a result, the actual value of e may be as high as 0.125. We find that U = 117.9 ± 1.8, which is in agreement with previous determinations. Using the value R1 = 6.8 R⊙ derived by Palate et al. (2013) the value of the observational internal structure constant k2,obs is consistent with theory. We confirm the presence of variability in the line profiles of the secondary star. RV

  5. The Ly(alpha) Line Profiles of Ultraluminous Infrared Galaxies: Fast Winds and Lyman Continuum Leakage

    NASA Technical Reports Server (NTRS)

    Martin, Crystal L.; Dijkstra, Mark; Henry, Alaina L.; Soto, Kurt T.; Danforth, Charles W.; Wong, Joseph

    2015-01-01

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect Ly(alpha) emission from eight ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the Ly(alpha) profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding -1000 km/s in three H II-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the Ly(alpha) line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The Ly(alpha) attenuation (as measured in the COS aperture) ranges from that of the far-UV continuum to over 100 times more. A simple radiative transfer model suggests the Ly(alpha) photons escape through cavities which have low column densities of neutral hydrogen and become optically thin to the Lyman continuum in the most advanced mergers. We show that the properties of the highly blueshifted line wings on the Ly(alpha) and optical emission-line profiles are consistent with emission from clumps of gas condensing out of a fast, hot wind. The luminosity of the Ly(alpha) emission increases nonlinearly with the ULIRG bolometric luminosity and represents about 0.1-1% of the radiative cooling from the hot winds in the H II-dominated ULIRGs.

  6. PROFILES OF Ly{alpha} EMISSION LINES OF THE EMITTERS AT z = 3.1

    SciTech Connect

    Yamada, T.; Morimoto, N.; Matsuda, Y.; Kousai, K.; Hayashino, T.; Umemura, M.

    2012-05-20

    We present the results of the observations of the Ly{alpha} line profiles of 91 emission-line galaxies at z = 3.1 with a spectral resolution of {lambda}/{delta}{lambda}(FWHM) Almost-Equal-To 1700 or 180 km s{sup -1}. A significant fraction of {approx}50% of the observed objects show the characteristic double peaks in their Ly{alpha} profile. The red peak is much stronger than the blue one for most of the cases. The red peaks themselves also show weak but significant asymmetry and their widths are correlated with the velocity separation of the red and the blue peaks. This implies that the peaks are not isolated multiple components with different velocities but parts of a single line that are modified by the absorption and/or scattering by the associated neutral hydrogen gas. The characteristic profile can be naturally explained by scattering in the expanding shell of the neutral hydrogen surrounding the Ly{alpha} emitting region while the attenuation by the intergalactic medium should also be considered. Our results suggest that the star formation in these Ly{alpha} emitters are dominated by young burst-like events that produce the intrinsic Ly{alpha} emission as well as the gas outflow.

  7. The intrinsic H I Lyman-alpha line profiles of late-type stars

    NASA Technical Reports Server (NTRS)

    Neff, J. E.; Landsman, W. B.; Bookbinder, J. A.; Linsky, J. L.

    1990-01-01

    The Lyman-alpha line of neutral hydrogen is probably the most important cooling channel for chromospheric plasma in late-type stars, yet it is also the least studied major line in the far ultraviolet. The scattering of much of the stellar Lyman-alpha flux by interstellar hydrogen, coupled with the geocoronal emission foreground, seriously complicates the analysis of the Lyman-alpha spectra. The influence of the local interstellar medium on the observed profiles was circumvented by observing stars with radial velocities sufficiently high to Doppler shift the center of the stellar emission line out of the interstellar absorption core. There are several stars that have high radial velocities by virtue of their presence in close binary systems. High resolution IUE (International Ultraviolet Explorer) spectra of Ly alpha line of two such eclipsing binary stars, AR Lac and TY Pyx, are obtained, at each orbital quadrature phase, when the projected orbital velocity is a maximum. By combining the spectra from opposite quadratures it is possible to piece together the entire stellar emission profiles. The third star in this study, delta Lep, is a single star with a high space velocity.

  8. Hydrogen Balmer alpha intensity distributions and line profiles from multiple scattering theory using realistic geocoronal models

    NASA Technical Reports Server (NTRS)

    Anderson, D. E., Jr.; Meier, R. R.; Hodges, R. R., Jr.; Tinsley, B. A.

    1987-01-01

    The H Balmer alpha nightglow is investigated by using Monte Carlo models of asymmetric geocoronal atomic hydrogen distributions as input to a radiative transfer model of solar Lyman-beta radiation in the thermosphere and atmosphere. It is shown that it is essential to include multiple scattering of Lyman-beta radiation in the interpretation of Balmer alpha airglow data. Observations of diurnal variation in the Balmer alpha airglow showing slightly greater intensities in the morning relative to evening are consistent with theory. No evidence is found for anything other than a single sinusoidal diurnal variation of exobase density. Dramatic changes in effective temperature derived from the observed Balmer alpha line profiles are expected on the basis of changing illumination conditions in the thermosphere and exosphere as different regions of the sky are scanned.

  9. LINE-PROFILE VARIABILITY FROM TIDAL FLOWS IN ALPHA VIRGINIS (SPICA)

    SciTech Connect

    Harrington, David; Kuhn, Jeffrey; Koenigsberger, Gloria; Moreno, Edmundo E-mail: kuhn@ifa.hawaii.ed

    2009-10-10

    We present the results of high precision, high-resolution (R approx 68,000) optical observations of the short-period (4 days) eccentric binary system Alpha Virginis (Spica) showing the photospheric line-profile variability that in this system can be attributed to non-radial pulsations driven by tidal effects. Although scant in orbital-phase coverage, the data provide signal-to-noise ratio > 2000 line profiles at full spectral resolution in the wavelength range DELTAlambda4000-8500 A, allowing a detailed study of the night-to-night variability as well as changes that occur on approx2 hr timescale. Using an ab initio theoretical calculation, we show that the line-profile variability can arise as a natural consequence of surface flows that are induced by the tidal interaction.

  10. A synoptic of H-alpha line profile in the T Tauri star SU Aurigae

    NASA Technical Reports Server (NTRS)

    Giampapa, Mark S.; Basri, Gibor S.; Johns, Christopher M.; Imhoff, Catherine

    1993-01-01

    We present a catalog of 106 high spectral resolution observations of the H-alpha line profile in the T Tauri star SU Aurigae, obtained during the period from 1986 October through 1990 November. The spectra were acquired during joint synoptic programs to observe selected T Tauri stars using the Hamilton Echelle Spectrometer of the Lick Observatory and the solar-stellar spectrograph at the McMath telescope of the National Solar Observatory on Kitt Peak. A restricted set of Mg II h and k line profiles was also obtained in a coordinated program involving the International Ultraviolet Explorer (IUE) satellite observatory and the McMath solar-stellar facility. Striking variability is evident on a nightly basis. A key result is that the relative intensity in the blue wing of H-alpha spanning a range of velocities bear -150 km/s is modulated at a period of 2.98 +/- 0.4 days. We identify the 2.98 day period with the rotation period of the star. We also find that the occurrence of the periodic modulation of the mass outflow is episodic and most evident during a 2 week sequence of nightly observations. We find two other intervals where the periodic spectroscopic variability is likely present, although at a lower level of significance at a lower level of significance. The variability is otherwise stochastic in nature. The Mg II resonance lines exhibit clear variability that is most pronounced in the blue wing of the k line. A comparison of the Mg II k line profile with H-alpha profiles obtained nearly simultaneous yields no apparent correlation between the variable features in each line. The profile shapes of the Mg II h and k lines are generally indicative of formation in a wind. An analysis of the principal features that appear in the H-alpha profile set suggests that the line is composed of contributions from an enhanced chromosphere; a relatively slow moving, dense, optically thick component of a stellar wind formed relatively close to the star; and an optically thin, high

  11. The asymmetric profile of the H76 alpha line emission from MWC349

    NASA Technical Reports Server (NTRS)

    Rodriquez, L. F.; Canto, J.; Escalante, V.; Moran, J. M.

    1986-01-01

    MWC349 is an emission-line star found by Merrill, Humason and Burwell (1932). Braes, Habing and Schoenmaker (1972) discovered that it is a strong radio source. The radio emission originates in a massive ionized wind that is expanding with a velocity of about 50 km s(-1). Its continuum spectrum fits well a nu(0.6) power law from the cm wavelengths to the far-IR. Radio recombination line emission from the envelope of MWC349 was first detected by Altenhoff, Strittmatter and Wendker (1981). We have obtained good signal-to-noise ratio, Very Large Array observations of the H76 alpha radio recombination line from the ionized wind of MWC349. Our data reveal that the profile is markedly asymmetric, with a steep rise on the blue side. This asymmetry could be due to non-LTE effects in the formation and transfer of the line or to intrinsic asymmetries in the envelope. Our analysis suggests that most probably the peculiar profile is caused by a non-LTE enhancement of the line emission from the side of the envelope nearer to the observer. This asymmetry has the opposite sense than that observed in optical and IR recombination lines, where a different effect (absorption of the stellar continuum by the gas in the wind between the star and the observer) is known to be dominant, leading to the classic P Cygni profile. We propose that the profiles of the radio recombination lines from ionized stellar winds will have this characteristic shape, while optical and IR recombination lines are characterized by P Cygni-like profiles. Unfortunately, at present the detection of radio recombination lines from ionized stellar winds is only feasible for MWC349 and a few other objects.

  12. Kinetic-Energy Distribution of D(2p) Atoms from Analysis of the D Lyman-Alpha Line Profile

    NASA Technical Reports Server (NTRS)

    Ciocca, M.; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The kinetic-energy distribution of D(2p) atoms resulting from electron-impact dissociation of D2 has been measured. A high-resolution vacuum ultraviolet spectrometer was employed for the first measurement of the D Lyman-alpha (D L(alpha)) emission line profiles at 20- and 100-eV excitation energies. Analysis of the deconvoluted line profile of D L(alpha) at 100 eV reveals the existence of a narrow line central peak of 29+/-2 mA full width at half maximum and a broad pedestal wing structure about 190 mA wide. The wings of the line can be used to determine the fast atom distribution. The wings of D L(alpha) arise from dissociative excitation of a series of doubly excited states that cross the Franck-Condon region between 23 and 40 eV. The fast atom distribution at 100-eV electron impact energy spans the energy range from 1 to 10 eV with a peak value near 6 eV. Slow D(2p) atoms characterized by a distribution function with peak energy near 100 meV produce the central peak profile, which is nearly independent of the impact energy. The deconvoluted line profiles of the central peak at 20 eV for dissociative excitation of D2 and H2 are fitted with an analytical function for use in calibration of space flight instrumentation equipped with a D/H absorption cell. The kinetic-energy and line profile results are compared to similar measurements for H2. The absolute cross sections for the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coefficients are given for the energy dependence of the measured slow atom cross section.

  13. Ultraviolet observations of cool stars. VI - L alpha and Mg II emission line profiles /and a search for flux variability/ in Arcturus

    NASA Technical Reports Server (NTRS)

    Mcclintock, W.; Moos, H. W.; Henry, R. C.; Linsky, J. L.; Barker, E. S.

    1978-01-01

    High-precision, high-resolution profiles of the L alpha and Mg II k chromospheric emission lines from Arcturus (alpha Boo) obtained with the Princeton Experimental Package aboard the Copernicus satellite are presented. Asymmetries seen in the profiles of these lines are probably intrinsic to the star, rather than the result of interstellar absorption. In contrast to previous observations of the Ca II K emission line, no evidence is found during a three-year period for variability in the profiles or in the total fluxes from these lines on time scales ranging from hours to months. Also presented is a flux profile of the O I 1302 line and flux upper limits for L beta, O VI 1032, Si III 1206, and O V 1218.

  14. Spatially and temporally resolved electron number density measurements in a decaying laser-induced plasma using hydrogen-alpha line profiles

    NASA Astrophysics Data System (ADS)

    Parigger, Christian; Plemmons, D. H.; Lewis, J. W. L.

    1995-06-01

    A Nd:YAG laser was operated at 1064 nm and with 6-ns pulse duration to achieve optical breakdown in gaseous hydrogen at pressures of 150 and 810 Torr. Spatially and temporally resolved laser-induced emission spectra were measured early in the plasma decay. With hydrogen-alpha line profiles, electron number density values were determined along the laser beam plasma in the range 1019 to 1016 cc -1.

  15. Genomic Profiling of a Human Leukemic Monocytic Cell-Line (THP-1) Exposed to Alpha Particle Radiation

    PubMed Central

    Chauhan, Vinita; Howland, Matthew

    2012-01-01

    This study examined alpha (α-) particle radiation effects on global changes in gene expression in human leukemic monocytic cells (THP-1) for the purposes of mining for candidate biomarkers that could be used for the development of a biological assessment tool. THP-1 cells were exposed to α-particle radiation at a dose range of 0 to 1.5 Gy. Twenty-four hours and three days after exposure gene expression was monitored using microarray technology. A total of 16 genes were dose responsive and classified as early onset due to their expression 24 h after exposure. Forty-eight transcripts were dose responsive and classified as late-onset as they were expressed 72 h after exposure. Among these genes, 6 genes were time and dose responsive and validated further using alternate technology. These transcripts were upregulated and associated with biological processes related to immune function, organelle stability and cell signalling/communication. This panel of genes merits further validation to determine if they are strong candidate biomarkers indicative of α-particle exposure. PMID:23097634

  16. Characteristics of the local interstellar hydrogen determined from PROGNOZ 5 and 6 interplanetary Lyman-alpha line profile measurements with a hydrogen absorption cell

    NASA Astrophysics Data System (ADS)

    Bertaux, J. L.; Lallement, R.; Kurt, V. G.; Mironova, E. N.

    1985-09-01

    The flow of interstellar H atoms in the solar system was observed through resonance scattering of solar Lyman-alpha protons with two Lyman-alpha photometers on the Prognoz 5 and 6 satellites. Data collected at five different locations in the solar system were compared with a model of the interstellar H flow, modified by solar interaction. Five parameters describing atomic hydrogen of the local interstellar medium and two parameters describing the solar interaction were derived simultaneously to give a good fit of the upwind hemisphere. The solar Lyman-alpha flux at line center was determined along with the ionization rate of H atoms.

  17. relline: Relativistic line profiles calculation

    NASA Astrophysics Data System (ADS)

    Dauser, Thomas

    2015-05-01

    relline calculates relativistic line profiles; it is compatible with the common X-ray data analysis software XSPEC (ascl:9910.005) and ISIS (ascl:1302.002). The two basic forms are an additive line model (RELLINE) and a convolution model to calculate relativistic smearing (RELCONV).

  18. COMPLEX VARIABILITY OF THE H{alpha} EMISSION LINE PROFILE OF THE T TAURI BINARY SYSTEM KH 15D: THE INFLUENCE OF ORBITAL PHASE, OCCULTATION BY THE CIRCUMBINARY DISK, AND ACCRETION PHENOMENA

    SciTech Connect

    Hamilton, Catrina M.; Johns-Krull, Christopher M.; Mundt, Reinhard; Herbst, William; Winn, Joshua N. E-mail: cmj@rice.edu E-mail: wherbst@wesleyan.edu

    2012-06-01

    We have obtained 48 high-resolution echelle spectra of the pre-main-sequence eclipsing binary system KH 15D (V582 Mon, P = 48.37 days, e {approx} 0.6, M{sub A} = 0.6 M{sub Sun }, M{sub B} = 0.7 M{sub Sun }). The eclipses are caused by a circumbinary disk (CBD) seen nearly edge on, which at the epoch of these observations completely obscured the orbit of star B and a large portion of the orbit of star A. The spectra were obtained over five contiguous observing seasons from 2001/2002 to 2005/2006 while star A was fully visible, fully occulted, and during several ingress and egress events. The H{alpha} line profile shows dramatic changes in these time series data over timescales ranging from days to years. A fraction of the variations are due to 'edge effects' and depend only on the height of star A above or below the razor sharp edge of the occulting disk. Other observed variations depend on the orbital phase: the H{alpha} emission line profile changes from an inverse P-Cygni-type profile during ingress to an enhanced double-peaked profile, with both a blue and a red emission component, during egress. Each of these interpreted variations are complicated by the fact that there is also a chaotic, irregular component present in these profiles. We find that the complex data set can be largely understood in the context of accretion onto the stars from a CBD with gas flows as predicted by the models of eccentric T Tauri binaries put forward by Artymowicz and Lubow, Guenther and Kley, and de Val-Borro et al. In particular, our data provide strong support for the pulsed accretion phenomenon, in which enhanced accretion occurs during and after perihelion passage.

  19. H. cap alpha. line in the spectrum of HDE 245770

    SciTech Connect

    Voikhanskaya, N.F.

    1980-09-01

    Constant and variable components are discriminated in the profile of the H..cap alpha.. emission line in the spectrum of the star HDE 245770. The variable component is formed near the degenerate component of the binary system. The constant part of the line has a steady radial velocity of +10 km/sec, while the variable part exhibits a radial-velocity curve having the same period, 104 sec, as the pulsations of the corresponding variable x-ray source A0535+26.

  20. The line profile variable B stars

    NASA Technical Reports Server (NTRS)

    Smith, M. A.

    1980-01-01

    The observational status of the line profile variable B stars is summarized. The following areas are discussed: recent history; evolutionary status; line profile variations; line strength variations; and photometric variations.

  1. THE LINE POLARIZATION WITHIN A GIANT Ly{alpha} NEBULA

    SciTech Connect

    Prescott, Moire K. M.; Smith, Paul S.; Schmidt, Gary D.; Dey, Arjun

    2011-04-01

    Recent theoretical work has suggested that Ly{alpha} nebulae could be substantially polarized in the Ly{alpha} emission line, depending on the geometry, kinematics, and powering mechanism at work. Polarization observations can therefore provide a useful constraint on the source of ionization in these systems. In this Letter, we present the first Ly{alpha} polarization measurements for a giant Ly{alpha} nebula at z{approx} 2.656. We do not detect any significant linear polarization of the Ly{alpha} emission: P{sub Ly{alpha}} = 2.6% {+-} 2.8% (corrected for statistical bias) within a single large aperture. The current data also do not show evidence for the radial polarization gradient predicted by some theoretical models. These results rule out singly scattered Ly{alpha} (e.g., from the nearby active galactic nucleus, AGN) and may be inconsistent with some models of backscattering in a spherical outflow. However, the effects of seeing, diminished signal-to-noise ratio, and angle averaging within radial bins make it difficult to put strong constraints on the radial polarization profile. The current constraints may be consistent with higher density outflow models, spherically symmetric infall models, photoionization by star formation within the nebula or the nearby AGN, resonant scattering, or non-spherically symmetric cold accretion (i.e., along filaments). Higher signal-to-noise ratio data probing to higher spatial resolution will allow us to harness the full diagnostic power of polarization observations in distinguishing between theoretical models of giant Ly{alpha} nebulae.

  2. Rocket borne solar eclipse experiment to measure the temperature structure of the solar corona via lyman-. cap alpha. line profile observations

    SciTech Connect

    Argo, H.V.

    1981-01-01

    A rocket borne experiment to measure the temperature structure of the inner solar corona via the doppler broadening of the resonance hydrogen Lyman-..cap alpha.. (lambda1216A) radiation scattered by ambient neutral hydrogen atoms was attempted during the 16 Feb 1980 solar eclipse. Two Nike-Black Brant V sounding rockets carrying instrumented payloads were launched into the path of the advancing eclipse umbra from the San Marco satellite launch platform 3 miles off the east coast of Kenya.

  3. THE FORMATION OF THE H{alpha} LINE IN THE SOLAR CHROMOSPHERE

    SciTech Connect

    Leenaarts, J.; Carlsson, M.; Rouppe van der Voort, L. E-mail: mats.carlsson@astro.uio.no

    2012-04-20

    We use state-of-the-art radiation-MHD simulations and three-dimensional (3D) non-LTE radiative transfer computations to investigate H{alpha} line formation in the solar chromosphere and apply the results of this investigation to develop the potential of H{alpha} as a diagnostic of the chromosphere. We show that one can accurately model H{alpha} line formation assuming statistical equilibrium and complete frequency redistribution provided the computation of the model atmosphere included non-equilibrium ionization of hydrogen and the Ly{alpha} and Ly{beta} line profiles are described by Doppler profiles. We find that 3D radiative transfer is essential in modeling hydrogen lines due to the low photon destruction probability in H{alpha}. The H{alpha} opacity in the upper chromosphere is mainly sensitive to the mass density and only weakly sensitive to the temperature. We find that the H{alpha} line-core intensity is correlated with the average formation height: The larger the average formation height is, the lower the intensity will be. The line-core width is a measure of the gas temperature in the line-forming region. The fibril-like dark structures seen in H{alpha} line-core images computed from our model atmosphere are tracing magnetic field lines. These structures are caused by field-aligned ridges of enhanced chromospheric mass density that raise their average formation height, and therefore make them appear dark against their deeper-formed surroundings. We compare with observations, and find that the simulated line-core widths are very similar to the observed ones, without the need for additional microturbulence.

  4. Variable Iron K(alpha) Lines in Seyfert 1 Galaxies

    NASA Technical Reports Server (NTRS)

    Weaver, K. A.; Gelbord, J.; Yaqoob, T.; White, Nicholas E. (Technical Monitor)

    2001-01-01

    We find that variability of the iron K alpha line is common in Seyfert 1 galaxies. Using data from the ASCA archive for objects that have been observed more than once during the mission, we study the time-averaged spectra from individual observations, thereby probing variability on timescales that range from days to years. Since the statistics of the data do not warrant searches for line variability in terms of a complex physical model, we use a simple Gaussian to model the gross shape of the line and then use the centroid energy, intensity, and equivalent width as robust indicators of changes in the line profile. We find that approximately 70% of Seyfert 1 galaxies (10 out of 15) show variability in at least one of these parameters: the centroid energy, intensity, and equivalent width vary in six, four, and eight sources, respectively. Because of the low signal-to-noise ratio, limited sampling, and time averaging, we consider these results to represent lower limits to the rate of incidence of variability. In most cases changes in the line do not appear to track changes in the continuum. In particular, we find no evidence for variability of the line intensity in NGC 4151, suggesting an origin in a region larger than the putative accretion disk, where most of the iron line has been thought to originate. Mrk 279 is investigated on short timescales. The time-averaged effective line energy (as measured by the Gaussian center energy, which is weighted by emission in the entire line profile) is 6.5 keV in the galaxy rest frame. As the continuum flux increases by 20% in a few hours, the Fe K line responds within approximately 10,000 seconds with the effective line energy increasing by 0.22 keV (approximately 10,500 kilometers per second). We also examine the ROSAT PSPC spectrum of Mrk 279 but find inconsistencies with ASCA. Problems with the ASCA and ROSAT calibration that affect simultaneous spectral fits at low energies are discussed in an appendix.

  5. The XMM-Newton Iron Line Profile of NGC 3783

    NASA Technical Reports Server (NTRS)

    Reeves, J. N.; Nandra, K.; George, I. M.; Pounds, K. A.; Turner, T. J.; Yaqoob, T.

    2003-01-01

    We report on observations of the iron K line in the nearby Seyfert 1 galaxy, NGC 3783, obtained in a long, 2 orbit (approx. 240 ks) XMM-Newton observation. The line profile obtained exhibits two strong narrow peaks at 6.4 keV and at 7.0 keV, with measured line equivalent widths of 120 and 35 eV respectively. The 6.4 keV emission is the K(alpha) line from near neutral Fe, whilst the 7.0 keV feature probably originates from a blend of the neutral Fe K(beta) line and the Hydrogen-like line of Fe at 6.97 keV. The relatively narrow velocity width of the K(alpha) line (approx. less than 5000 km/s), its lack of response to the continuum emission on short timescales and the detection of a neutral Compton reflection component are all consistent with a distant origin in Compton-thick matter such as the putative molecular torus. A strong absorption line from highly ionized iron (at 6.67 keV) is detected in the time-averaged iron line profile, whilst the depth of the feature appears to vary with time, being strongest when the continuum flux is higher. The iron absorption line probably arises from the highest ionization component of the known warm absorber in NGC 3783, with an ionization of log xi approx 3 and column density of N(sub H) approx. 5 x 10(exp 22)/sq cm and may originate from within 0.1 pc of the nucleus. A weak red-wing to the iron K line profile is also detected below 6.4 keV. However when the effect of the highly ionized warm absorber on the underlying continuum is taken into account, the requirement for a relativistic iron line component from the inner disk is reduced.

  6. Non-Voigt Lyalpha Absorption Line Profiles.

    PubMed

    Outram; Carswell; Theuns

    2000-02-01

    Recent numerical simulations have lead to a paradigm shift in our understanding of the intergalactic medium and the loss of a physical justification for Voigt profile fitting of the Lyalpha forest. Many individual lines seen in simulated spectra have significant departures from the Voigt profile, yet could be well fitted by a blend of two or more such lines. We discuss the expected effect on the line profiles due to ongoing gravitational structure formation and Hubble expansion. We develop a method to detect departures from Voigt profiles of the absorption lines in a statistical way and apply this method to simulated Lyalpha forest spectra, confirming that the profiles seen do statistically differ from Voigt profiles. PMID:10622758

  7. Anisotropic. cap alpha. -emission of on-line separated isotopes

    SciTech Connect

    Wouters, J.; Vandeplassche, D.; van Walle, E.; Severijns, N.; Van Haverbeke, J.; Vanneste, L.

    1987-12-10

    The technical realization of particle detection at very low temperatures (4K) has made it possible to study for the first time the anisotropic ..cap alpha..-decay of oriented nuclei which have been produced, separated and implanted on line. The measured ..cap alpha..-angular distributions reveal surprising new results on nuclear aspects as well as in solid state physics. The nuclear structure information from these data questions the older ..cap alpha..-decay theoretical interpretation and urges for a reaxamination of the earliest work on anisotropic ..cap alpha..-decay.

  8. Asymmetry in Fraunhofer-line profiles

    SciTech Connect

    Kokhan, E.K.; Krat, V.A.

    1981-07-01

    Profiles of some unblended Fraunhofer lines have been analyzed. Two faint satellite features can be discerned, in the red and the violet wings of each line. These satellites may be evidence of regular upward and downward motion of the plasma above granules and the dark intergranular network: streaming of granular convective overshoot and ''chromospheric rain.''

  9. Anisotropic alpha emission from on-line separated isotopes

    SciTech Connect

    Wouters, J.; Vandeplassche, D.; van Walle, E.; Severijns, N.; Vanneste, L.

    1986-05-05

    A systematic on-line nuclear-orientation study of heavy isotopes using anisotropic ..cap alpha.. emission is reported for the first time. The anisotrophies recorded for /sup 199/At, /sup 201/At, and /sup 203/At are remarkably pronounced and strongly varying. At lower neutron number the ..cap alpha.. particles are more preferentially emitted perpendicularly to the nuclear-spin direction. This may be interpreted in terms of the high sensitivity of the ..cap alpha..-emission probability to changes in the nuclear shape.

  10. ASYMMETRIC ABSORPTION PROFILES OF Ly{alpha} AND Ly{beta} IN DAMPED Ly{alpha} SYSTEMS

    SciTech Connect

    Lee, Hee-Won

    2013-08-01

    Damped Ly{alpha} systems observed in the quasar spectra are characterized by a high neutral hydrogen column density, N{sub HI} > 2 x 10{sup 20} cm{sup -2}. The absorption wing profiles are often fitted using the Voigt function due to the fact that the scattering cross section near the resonant line center is approximately described by the Lorentzian function. Since a hydrogen atom has infinitely many p states that participate in the electric dipole interaction, the cross section starts to deviate from the Lorentzian in an asymmetric way in the line wing regions. We investigate this asymmetry in the absorption line profiles around Ly{alpha} and Ly{beta} as a function of the neutral hydrogen column density N{sub HI}. In terms of {Delta}{lambda} {identical_to} {lambda} - {lambda}{sub {alpha}}, we expand the Kramers-Heisenberg formula around Ly{alpha} to find {sigma}({lambda}) {approx_equal} (0.5f{sub 12}){sup 2}{sigma}{sub T}({Delta}{lambda}/{lambda}{sub {alpha}}){sup -2}[1 + 3.792({Delta}{lambda}/{lambda}{sub {alpha}})], where f{sub 12} and {sigma}{sub T} are the oscillator strength of Ly{alpha} and the Thomson scattering cross section, respectively. In terms of {Delta}{lambda}{sub 2} {identical_to} {lambda} - {lambda}{sub {beta}} in the vicinity of Ly{beta}, the total scattering cross section, given as the sum of cross sections for Rayleigh and Raman scattering, is shown to be {sigma}({lambda}) {approx_equal} {sigma}{sub T}(0.5f{sub 13}){sup 2}(1 + R{sub 0})({Delta}{lambda}{sub 2}/{lambda}{sub {beta}}){sup -2}[1 - 24.68({Delta}{lambda}{sub 2}/{lambda}{sub {beta}})] with f{sub 13} and the factor R{sub 0} = 0.1342 being the oscillator strength for Ly{beta} and the ratio of the Raman cross section to Rayleigh cross section, respectively. A redward asymmetry develops around Ly{alpha}, whereas a blue asymmetry is obtained for Ly{beta}. The absorption center shifts are found to be almost proportional to the neutral hydrogen column density.

  11. K alpha line emission during solar X-ray bursts

    NASA Technical Reports Server (NTRS)

    Phillips, K. J. H.; Neupert, W. M.

    1973-01-01

    Calculations of K alpha line emission from S, Ar, Ca and Fe are presented. It is reported that on the basis of data for hard X-ray bursts, the flux during most impulsive, non-thermal events is likely to be weak, though for a few strong bursts, a flux of approximately 100 photons/cm/s may be expected. The amount of S K alpha emission particularly is sensitively dependent on the value of the lower energy bound of the non-thermal electron distribution, offering a possible means of determining this. Thermal K alpha emission is only significant for Fe ions. The calculated thermal K alpha radiation is much less than that observed during an intense soft X-ray burst. It is concluded that a detailed temperature structure for the emission source is required in order to explain the discrepancy.

  12. PROFIT: Emission-line PROfile FITting routine

    NASA Astrophysics Data System (ADS)

    Riffel, Rogemar A.

    2012-04-01

    The PROFIT is an IDL routine to do automated fitting of emission-line profiles by Gaussian curves or Gauss-Hermite series otimized for use in Integral Field and Fabry-Perot data cubes. As output PROFIT gives two-dimensional FITS files for the emission-line flux distribution, centroid velocity, velocity dispersion and higher order Gauss-Hermite moments (h3 and h4).

  13. THE PHOTOMETRIC AND KINEMATIC STRUCTURE OF FACE-ON DISK GALAXIES. II. INTEGRATED LINE PROFILE CHARACTERIZATION AND THE ORIGIN OF LINE PROFILE ASYMMETRY

    SciTech Connect

    Andersen, David R.; Bershady, Matthew A. E-mail: mab@astro.wisc.edu

    2009-08-01

    We perform a moments analysis of H I and H II global line profiles for 33 nearly face-on disk galaxies for the threefold purpose of rationalizing and interpreting line profile indices in the literature, presenting robust moment definitions with analytic error functions calibrated against Monte Carlo simulation, and probing the physical origin of line profile asymmetries. The first four profile moments serve as viable surrogates for the recession velocity, line width, asymmetry, and profile shape, respectively. The first three moments are superior, by a factor of {approx}2 in precision, to related quantities defined in the literature. First and third profile moments are related; skew can be used to calculate more accurate recession velocities from global profiles. Second and fourth profile moments are linked, corresponding to the known trend that narrow (but well resolved) line widths tend to be more Gaussian. H{alpha} kurtosis also appears correlated with the spatially resolved line width of the ionized gas. No systematics appear between various measures of line width and true rotation speed other than the wide range of normalizations, which we calibrate. This conclusion and calibration, however, is highly sample dependent. The ratio of H II to H I widths is consistent with unity, even at low projected line width. There may be a trend toward a decrease in the ratio of H II to H I widths consistent with previous studies, but we also observe greater scatter. While there is good agreement between H I and H II first, second, and fourth moments, we find no positive correlation between skew measured from H I and H II profiles. Detailed analysis of the spatially resolved H{alpha} distribution demonstrates that H II global profile asymmetries are dominated by differences in the gas distribution, not kinematic asymmetries.

  14. K alpha line emission during solar X-ray bursts

    NASA Technical Reports Server (NTRS)

    Phillips, K. J. H.; Neupert, W. M.

    1973-01-01

    The expected flux of K alpha line emission from sulfur, argon, calcium, and iron is calculated during both thermal and nonthermal solar X-ray events. Such emission is shown to be weak during the course of most of the nonthermal hard X-ray bursts that Kane and Anderson (1970) have observed. If Compton backscattering is significant at high energies, the flux is reduced still further for disk flares, but it is noted that the strong, near-limb burst of June 26 would have produced about 100 photons /sq cm/sec of sulfur and iron K alpha emission. The impulsive hard X-ray bursts may in general be too short-lived for much K alpha emission. It may be noted that sulfur K alpha emission in particular depends sensitively on the lower-energy limit of the nonthermal electron spectrum, assuming such a sharply defined boundary exists. During soft X-ray bursts, when temperatures of a few 10 to the 7th power K are obtained, K alpha emission from certain iron ions, specifically Fe XVIII-XXIII, may be important.

  15. Latitudinal properties of the Lyman alpha and O VI profiles in the extended solar corona

    NASA Astrophysics Data System (ADS)

    Zangrilli, L.; Nicolosi, P.; Poletto, G.; Noci, G.; Romoli, M.; Kohl, J. L.

    1999-02-01

    We have analysed the latitudinal properties of the profiles of the H I Lyman alpha line at 1215.6 protect Angstroms and of the O VI doublet at 1031.9 protect Angstroms and 1037.6 protect Angstroms in the extended solar corona, between 1.5 R_sun and 2.0 R_sun. Observations have been performed with the UltraViolet Coronagraph Spectrometer (UVCS) on board the ESA-NASA solar satellite SOHO (SOlar and Heliospheric Observatory). The results show that these lines have quite a different behaviour with latitude: the Ly alpha line has larger full width at half maximum (FWHM) values in the streamer region and narrower ones towards polar latitudes, while the O VI lines have a minimum FWHM at the center of the streamer, which almost steadily increases towards polar regions. The observations have been analysed looking also for an interpretation in terms of selective heating mechanisms. The implications of our results for coronal heating theories are also examined. In particular we discuss the possibility for the presence of the ion-cyclotron coronal heating mechanism. Moreover, we point out an interesting correlation between the intensity of the coronal lines and their widths, which may be relevant to the open question of the different morphological features visible in the Ly alpha and O VI lines.

  16. High resolution observations of magnesium II 2800 A in Alpha Centauri A - The density of interstellar magnesium II and the stellar chromospheric profiles

    NASA Technical Reports Server (NTRS)

    Oegerle, W. R.; Kondo, Y.; Stencel, R. E.; Weiler, E. J.

    1982-01-01

    The profiles are virtually identical with the solar profiles except for the presence of an absorption feature near line center in the h and k lines of Alpha Centauri A. It is found that this absorption feature can be explained by interstellar absorption of Mg II along the line of sight. The average density of Mg II is found to be 2.75 plus or minus 0.7 x 10 to the -7th/cu cm, in good agreement with the previously determined values in the solar vicinity in the direction of Alpha CMa and Alpha Lyr.

  17. A comparison of lyman alpha and He lambda 10830 line structures and variations in early-type star atmospheres

    NASA Technical Reports Server (NTRS)

    Meisel, D. D.

    1974-01-01

    Line profiles were first obtained at maximum velocity separation of the spectroscopic binary Spica (alpha Vir), and then high resolution spectrophotometric images of selected features in the 1.1 micron spectrum of Comet Kohoutek were obtained in order to gain insight into the structures and variations in early-type star atmospheres.

  18. Effects of excitation laser wavelength on Ly-{alpha} and He-{alpha} line emission from nitrogen plasmas

    SciTech Connect

    Harilal, S. S.; Miloshevsky, G. V.; Sizyuk, T.; Hassanein, A.

    2013-01-15

    Laser-produced nitrogen plasmas emitting radiation at 2.48 nm (Ly-{alpha}) and 2.88 nm (He-{alpha}) are considered potential efficient sources for water-window (WW) microscopy. The atomic and optical properties of nitrogen plasma and influence of the laser wavelength on the line emission in the WW range are investigated. It is found that the optimal temperatures for maximum emission from Ly-{alpha} and He-{alpha} spectral lines are 40-60 eV and 80-100 eV, respectively. The WW line emission and the conversion efficiency (CE) are estimated for three distinct Nd:YAG laser wavelengths (1064 nm, 532 nm, and 266 nm). The calculated CEs are compared with experimentally observed CE values. It is found that 1064 nm wavelength provides the highest CE from laser to Ly-{alpha} and He-{alpha} radiation.

  19. The sensitivity of H alpha profiles to rapid electron beam fluctuations

    NASA Technical Reports Server (NTRS)

    Canfield, Richard C.; Gayley, Kenneth G.

    1986-01-01

    In order to understand the temporal relationship between H alpha and hard X-ray emission predicted by the nonthermal electron thick target model of impulsive-phase energy transport the time-dependent theoretical H alpha profiles were computed for the dynamic model atmospheres of Fisher, Canfield, and McClymont, which simulate the effects of an impulsively initiated power-law beam of electrons. On the basis of the physical analysis it was expected that a very rapid H alpha response to an instantaneous increase in the flux of a nonthermal deka-keV electron beam, as compared to the timescale associated with the propagation of these electrons over characteristic flare coronal loop spatial scales. It was concluded that observational efforts to test the thick target nonthermal electron model through detection of impulsive H alpha brightenings associated with impulsive hard X-ray or microwave bursts should initially focus attention on the H alpha line center. Additional simultaneous blue-wing measurements will have substantial diagnostic potential.

  20. A long-term study of H(alpha) line variations in FK Comae Berenices

    NASA Technical Reports Server (NTRS)

    Welty, Alan D.; Ramsey, Lawrence W.; Iyengar, Mrinal; Nations, Harold L.; Buzasi, Derek L.

    1993-01-01

    We present observations of H(alpha) V/R ratio variations in FK Comae Berencies obtained during several observing seasons from 1981 to 1992. The raw H(alpha) emission profile is always observed to be double peaked due to the stellar-absorption component. During the most years the V/R ratio varies regularly with the period of the photometric light curve. The V/R periodicity is most obvious when time spans no longer than several stellar rotations are considered. We propose that the bulk of the emission component of the H(alpha) line arises in corotating circumstellar material that may be similar to that of a quiescent solar prominence. The lifetime of these structures appears to be on the order of weeks. A weak contribution from a circumstellar disk is evident and chromospheric emission may also be present. The appearance or disappearance of circumstellar structures over periods longer than a few weeks, or the total absence of such structures, blurs the more regular variations in H(alpha) seen over short time scales. Other more stochastic activity, such as flares, also clearly occurs. Phase shifts of the V/R ratio from year to year rule out the hypothesis that mass tranfer in a close binary system is responsible for the V/R variations.

  1. Magnetic Turbulence and Line Broadening in Simulations of Lyman-Alpha Absorption

    NASA Astrophysics Data System (ADS)

    Gurvich, Alex; Burkhart, Blakesley K.; Bird, Simeon

    2016-01-01

    We use the Illustris cosmological AREPO simulations to study the effects of gas turbulence and magnetic fields on measurements from the Lyman-Alpha forest. We generate simulated Lyman-Alpha spectra and plot the distributions of Column Density (CDD) and Doppler Width (b) both by adhering to the canonical method of fitting Voigt profiles to absorption lines and by directly measuring the column density and equivalent widths from snapshot data .We investigate the effects of additional unresolved gas turbulence in Illustris by adding an additional broadening term to the line profiles to mimic turbulent broadening. When we do this, we find a measurable effect in the CDD and an offset in the mean of the b distribution corresponding to the additional turbulence. We also compare different MHD runs in AREPO we find that the CDD can measurably differentiate between magnetic seed field at redshifts as low as z=0.1, but we do not find that the b distribution is affected at a detectable level. Our work suggests that the effects of turbulence and magnetic fields from z=2-0.1 can potentially be measured with these diagnostics. This work was supported in part by the NSF REU and DoD ASSURE programs under NSF grant no. 1262851 and by the Smithsonian Institution.

  2. Dayglow Emission Line Profiles from the Outer Planets Cycle 4-MED Part 2 OF 5414

    NASA Astrophysics Data System (ADS)

    Clarke, John

    1994-01-01

    Recent IUE observations of the H Ly alpha emission line profilefrom Jupiter's dayglow and aurora reveal a substantial line broadening,implying that the observed high brightness is due to resonantscattering of solar emission with a broad line rather than chargedparticle excitation. This may reflect highly energetic processesproducing a 5-10 km/sec suprathermal population of H atoms in Jupiter'supper atmosphere, which in turn may be related to the unresolved questionof the high exospheric temperatures of 400-1200 K detected on all 4 giantplanets during the Voyager encounters. It is clear that if the bright HLy alpha emissions from the outer planets are due mainly to resonantscattering of solar and interplanetary emissions, as observedon Jupiter and Saturn from long term correlations with the solarLy alpha flux, then the lines from all 4 planets must be broad toexplain the observed high albedos. The H Ly alpha lineshapes providea discriminant between the processes of resonant scattering andcharged particle excitation. We propose to obtain high signal to noiseH Ly alpha line profile measurements from Saturn, Uranus, and Neptuneto resolve the questions about the excitation processes for the brightairglow emissions.SATURN PART ONLY - NEPTUNE AND URANUS IN ORIGIAL PROP (5414).

  3. Relativistic formulation for the Doppler-broadened line profile

    SciTech Connect

    Huang, Young-Sea; Chiue, Juang-Han; Huang, Yi-Chi; Hsiung, Te-Chih

    2010-07-15

    Profiles of spectral lines due to the thermal motion of light-emitting particles are formulated based on the classical and the relativistic Doppler effects, respectively. For the classical case, the well-known Doppler-broadened line profile is reproduced. For the relativistic case, the line profile obtained is asymmetrically broadened with increasing temperature. However, the peak frequency remains unshifted, in contrast to blueshifted, as has been predicted in the current literature. Reasoning is given as to why the relativistic Doppler-broadened line profile currently accepted is probably invalid.

  4. On systematic errors in spectral line parameters retrieved with the Voigt line profile

    NASA Astrophysics Data System (ADS)

    Kochanov, V. P.

    2012-08-01

    Systematic errors inherent in the Voigt line profile are analyzed. Molecular spectrum processing with the Voigt profile is shown to underestimate line intensities by 1-4%, with the errors in line positions being 0.0005 cm-1 and the decrease in pressure broadening coefficients varying from 5% to 55%.

  5. Speed-dependent spectral line profile including line narrowing and mixing

    NASA Astrophysics Data System (ADS)

    Kochanov, Victor P.

    2016-07-01

    A line profile model was developed that accounts for all essential underlying physical mechanisms. The model is based on the quantum-mechanical collision integral kernel calculated for intermolecular interaction potentials ∝r-n with n=3…6 where r is the distance between colliding molecules. It was shown that collisions of molecules with scattering on classical small angles flatten the line profile. The relative flattening reaches 10% for n=3 and has a smaller value, ~2%, for n=6 in conditions of inhomogeneous line broadening. An algebraic expression for the line profile was obtained, which allows processing recorded spectra with preliminary estimation and constraint of some of the profile's parameters.

  6. Profiles of emission lines in Be stars.

    NASA Technical Reports Server (NTRS)

    Huang, S. S.

    1972-01-01

    Study of the broadening functions resulting from a gaseous ring in circular motion around a star according to Kepler's law. When the distribution in the gaseous ring has a circular symmetry in the equatorial plane, the broadening profile is related to the surface density distribution along the radius by an integral equation which can be transformed into the Abel integral equation and solved analytically. Profiles corresponding to gaseous rings with a uniform density distribution but different widths are used to illustrate the general properties of the profile broadened by the gaseous ring in circular motion. The emission profile has also been studied for cases in which the circular motion does not follow Kepler's law.

  7. Profiled spectral lines generated in the field of Kerr superspinars

    SciTech Connect

    Schee, Jan; Stuchlík, Zdenek E-mail: zdenek.stuchlik@fpf.slu.cz

    2013-04-01

    String Theory suggests existence of primordial Kerr superspinars, extremely compact objects with external spacetime described by the Kerr naked singularity geometry. The primordial Kerr superspinars have to be converted to a near-extreme black hole due to accretion, but they could survive to the era of highly redshifted quasars. We study the shape of the profiled spectral lines generated by radiating rings or the innermost parts of Keplerian discs orbiting the Kerr superspinars. Influence of the superspinar surface location on the profiled lines is also considered. We demonstrate strong difference of the character of the profiled lines generated by radiating rings for all values of the superspinar spin and all values of the inclination angles of the observer when compared to those generated in the field of Kerr black holes. For small and mediate inclination angles there are large quantitative differences in the extension and position of the lines. For large inclination angles even strong qualitative difference appears as the profiled lines have a clear doubled character. The smaller, redshifted region of the profiled line is related to the photons reaching the regions near the superspinar surface. Strong differences are obtained also for profiled lines generated by the innermost parts of Keplerian discs especially in the shape of the line. The influence of the superspinar surface location is reflected in the intermediate parts of the the profiled lines. The line profiles can give a clear signature of the presence of a Kerr superspinar and in principle enable estimates of its surface location since the signatures of the superspinar surface location are of different character as those corresponding to the presence of the black hole horizon.

  8. SIMULTANEOUS ULTRAVIOLET AND OPTICAL EMISSION-LINE PROFILES OF QUASARS: IMPLICATIONS FOR BLACK HOLE MASS DETERMINATION

    SciTech Connect

    Ho, Luis C.; Dong Xiaobo; Goldoni, Paolo; Ponti, Gabriele; Greene, Jenny E.

    2012-07-20

    The X-shooter instrument on the Very Large Telescope was used to obtain spectra of seven moderate-redshift quasars simultaneously covering the spectral range {approx}3000 A to 2.5 {mu}m. At z Almost-Equal-To 1.5, most of the prominent broad emission lines in the ultraviolet to optical region are captured in their rest frame. We use this unique data set, which mitigates complications from source variability, to intercompare the line profiles of C IV {lambda}1549, C III] {lambda}1909, Mg II {lambda}2800, and H{alpha} and evaluate their implications for black hole (BH) mass estimation. We confirm that Mg II and the Balmer lines share similar kinematics and that they deliver mutually consistent BH mass estimates with minimal internal scatter ({approx}<0.1 dex) using the latest virial mass estimators. Although no virial mass formalism has yet been calibrated for C III], this line does not appear promising for such an application because of the large spread of its velocity width compared to lines of both higher and lower ionization; part of the discrepancy may be due to the difficulty of deblending C III] from its neighboring lines. The situation for C IV is complex and, because of the limited statistics of our small sample, inconclusive. On the one hand, slightly more than half of our sample (4/7) have C IV line widths that correlate reasonably well with H{alpha} line widths, and their respective BH mass estimates agree to within {approx}0.15 dex. The rest, on the other hand, exhibit exceptionally broad C IV profiles that overestimate virial masses by factors of 2-5 compared to H{alpha}. As C IV is widely used to study BH demographics at high redshifts, we urgently need to revisit our analysis with a larger sample.

  9. ANALYSIS OF CORONAL GREEN LINE PROFILES: EVIDENCE OF EXCESS BLUESHIFTS

    SciTech Connect

    Raju, K. P.; Chandrasekhar, T.; Ashok, N. M. E-mail: chandra@prl.res.in

    2011-08-01

    Coronal green line (Fe XIV 5303 A) profiles were obtained from Fabry-Perot interferometric observations of the solar corona during the total solar eclipse of 2001 June 21 from Lusaka, Zambia. The instrumental width is about 0.2 A and the spectral resolution is about 26,000. About 300 line profiles were obtained within a radial range of 1.0-1.5 R{sub sun} and a position angle coverage of about 240{sup 0}. The line profiles were fitted with single Gaussians, and their intensities, Doppler velocities, and line widths were obtained. Also obtained were the centroids of the line profiles, which give a measure of line asymmetry. The histograms of Doppler velocity show excess blueshifts, while the centroids reveal a predominant blue wing in the line profiles. It was found that the centroids and the Doppler velocities are highly correlated. This points to the presence of multiple components in the line profiles, with an excess of blueshifted components. We then obtained the (Blue-Red) wing intensities, which clearly reveal the secondary components, the majority of which are blueshifted. This confirms that the coronal green line profiles often contain multicomponents with excess blueshifts, which also depend on the solar activity. The magnitude of the Doppler velocity of the secondary components is in the range of 20-40 km s{sup -1} and shows an increase toward the poles. Possible explanations of the multicomponents are the type II spicules that were recently found to be important to coronal heating or the nascent solar wind flow, but the cause of the blue asymmetry in the coronal lines above the limb remains unclear.

  10. The Mg II line profile in the Seyfert galaxy NGC 4151: A new outflowing component

    NASA Technical Reports Server (NTRS)

    Leech, Kieron J.; Penston, M. V.; Snijders, M. A. J.; Gull, T.

    1986-01-01

    The Mg II 2795, 2802A doublet in the Seyfert galaxy NGC 4151 was examined to search for velocity systems in absorption and emission. Evidence for a narrow, outflowing absorption system in Mg II having a velocity of +825 km/sec relative to the Sun, -165 km/sec relative to the systemic velocity of NGC 4151 is presented. This feature is not present in Ly alpha or C IV and possible explanations for this are considered. For the Mg II and C IV lines a model decomposition of the line profile is shown.

  11. The Mg II line profile in the Seyfert galaxy NGC 4151 - A new outflowing component

    NASA Technical Reports Server (NTRS)

    Leech, Kieron J.; Penston, M. V.; Snijders, M. A. J.; Gull, T. R.

    1987-01-01

    This paper examines the Mg II 2795-2802 A doublet in the Seyfert galaxy NGC 4151 at a higher resolution than has previously been used, searching for velocity systems in absorption and emission. Evidence is presented for a new, narrow, outflowing absorption system in Mg II having a velocity of 825 km/s relative to the sun, and -165 km/s relative to the systemic velocity of NGC 4151. This feature is not present in Ly-alpha or C IV and possible explanations for this are considered. For the Mg II and C IV lines, a model decomposition of the line profile is presented.

  12. Line drawing illustrating Skylab crew rescue mission profile

    NASA Technical Reports Server (NTRS)

    1971-01-01

    A line drawing by North American Rockwell Space Division artist illustrating Skylab crew rescue mission profile. The standard Command Module converts from a three-seater to accommodate five astronauts for the return trip.

  13. Toxicities of trichosanthin and alpha-momorcharin, abortifacient proteins from Chinese medicinal plants, on cultured tumor cell lines.

    PubMed

    Tsao, S W; Ng, T B; Yeung, H W

    1990-01-01

    Trichosanthin and alpha-momorcharin are abortifacient proteins extracted from Chinese medicinal herbs. Study of their in vitro cytotoxicities showed that the two proteins selectively injured choriocarcinoma and melanoma cells. Hepatoma cells represented the most resistant cell line among the various cell lines investigated. Cytotoxicity profiles of trichosanthin and alpha-momorcharin differed from those of anti-cancer drugs which interfere with DNA metabolism such as cisplatin, methotrexate and 5-fluorouracil. Radioactive precursor incorporation studies suggested that the two abortifacient proteins inhibited cellular protein synthesis. The marked decrease in secretion of human chorionic gonadotrophin and progesterone by choriocarcinoma cells after treatment with the proteins could be attributed mainly to loss of cells. PMID:2175958

  14. Technology information profile: Long-Range Alpha Detector (LRAD)

    SciTech Connect

    Bounds, J.A.

    1995-02-01

    The idea to develop some sort of radiation detection using this knowledge was passed down and after extensive and ground-breaking development, practical and sensitive devices were invented that are particularly sensitive to alpha radiation. Well over twenty different LRAD detectors have been successfully built and plans exist for many more. No parallel work is known to exist, and the ability to detect alpha radiation at such distances is unequaled.

  15. Fe XXV line profiles in colliding wind binaries

    NASA Astrophysics Data System (ADS)

    Rauw, Gregor; Mossoux, Enmanuelle; Nazé, Yaël

    2016-02-01

    Strong wind-wind collisions in massive binaries generate a very hot plasma that frequently produces a moderately strong iron line. The morphology of this line depends upon the properties of the wind interaction zone and its orientation with respect to the line of sight. As the binary components revolve around their common centre of mass, the line profiles are thus expected to vary. With the advent of the next generation of X-ray observatories (Astro-H, Athena) that will offer high-resolution spectroscopy above 6 keV, it will become possible to exploit these changes as the most sensitive probe of the inner parts of the colliding wind interaction. Using a simple prescription of the wind-wind interaction in an early-type binary, we have generated synthetic line profiles for a number of configurations and orbital phases. These profiles can help constrain the properties of the stellar winds in such binary systems.

  16. Spectral Lines Profiles of Be Star: Beta Lyrae

    NASA Astrophysics Data System (ADS)

    Ahmad, N.; Zainuddin, Mohd. Z. Yahya, Mohd. S.

    2009-08-01

    The variation of spectral lines profiles has been studies on Beta Lyrae based on the data from Jun to Sept. 1999 taken from Ritter Observatory. The V/R between the violet and red intensity peaks of Halpha ratio radial velocity show the violet-shifting and the comparison on spectral profile with data taken in 2007 at Langkawi National Observatory shows some changes.

  17. The Line Profile Variations of eta Carinae Through the 2009.0 Spectroscopic Event

    NASA Astrophysics Data System (ADS)

    Richardson, Noel; Gies, D.; Henry, T.; Fernandez-Lajus, E.; Okazaki, A.

    2010-01-01

    We report on high resolution echelle spectroscopy of the 2009.0 spectroscopic event of eta Carinae that we collected via SMARTS observations using the CTIO 1.5 m telescope and echelle spectrograph. Our observations were made almost every night over a two month interval around the predicted minimum of eta Car. We observed a dramatic fading of the H-alpha line emission that reached a minimum six days after the X-ray minimum. About 15 days prior to the H-alpha flux minimum, the H-alpha profile exhibited the emergence of a broad, P Cygni type, absorption component (near a Doppler shift of -500 km/s and a narrow absorption component (near -144 km/s and probably associated with intervening gas from the Little Homunculus Nebula). We also observed the He I 5876, 6678, and 7065 lines. The line profile variations are similar to those observed during previous events, and the temporal variations are consistent with qualitative expectations about changes in the primary star's stellar wind that result from the wind - wind collision with a massive binary companion. This work was supported by the National Science Foundation under grant AST-0606861.

  18. Discovery of the Red-Skewed K-alpha Iron Line in Cyg X-2 with Suzaku

    NASA Technical Reports Server (NTRS)

    Shaposhnikov, Nikolai; Titarchuk, Lev; Laurent, Philippe

    2008-01-01

    We report on the Suzaku observation of neutron star low-mass X-ray binary Cygnus X-2 which reveals strong iron K-alpha emission line. The line profile shows a prominent red wing extending down to 4 keV. This discovery increases the number of neutron star sources where red-skewed iron lines were observed and strongly suggests that this phenomenon is common not only in black holes but also in other types of compact objects. We examine the line profile by fitting it with the model which attributes its production to the relativistic effects due to disk reflection of X-ray radiation. We also apply an alternative model where the red wing is a result of down-scattering effect of the first order with respect to electron velocity in the wind outflow. Both models describe adequately the observed line profile. However, the X-ray variability in a state similar to that in the Suzaku observation which we establish by analysing RXTE observation favors the wind origin of the line formation.

  19. Synthesis and antioxidant profile of all-rac-alpha-selenotocopherol.

    PubMed

    Shanks, David; Amorati, Riccardo; Fumo, Maria Grazia; Pedulli, Gian Franco; Valgimigli, Luca; Engman, Lars

    2006-02-01

    all-rac-alpha-Selenotocopherol (6c) has been synthesized in 11 steps in 6.6% total yield. Key steps include chloromethylation to approach the persubstituted aromatic 9b and cyclization of alcohol precursor 10 by radical homolytic substitution at selenium to form the selenotocopherol heterocycle. Determination of the OH bond dissociation enthalpy (BDE) of 6c by electron paramagnetic resonance (EPR) equilibration techniques gave a value of 78.1 +/- 0.3 kcal mol(-1), approximately 1 kcal mol(-1) higher than that of alpha-tocopherol. Kinetic studies performed by measuring oxygen uptake of the induced oxidation of styrene in the presence of an antioxidant showed that selenotocopherol (6c) was a slightly poorer inhibitor than alpha-tocopherol, in agreement with the BDE values. In contrast to simpler selenotocopherol analogues, 6c was not regenerable in the presence of a stoichiometric coreductant in a two-phase lipid peroxidation model. PMID:16438517

  20. Lens proteome map and alpha-crystallin profile of the catfish Rita rita.

    PubMed

    Mohanty, Bimal Prasanna; Bhattacharjee, Soma; Das, Manas Kumar

    2011-02-01

    Crystallins are a diverse group of proteins that constitute nearly 90% of the total soluble proteins of the vertebrate eye lens and these tightly packed crystallins are responsible for transparency of the lens. These proteins have been studied in different model and non-model species for understanding the modifications they undergo with ageing that lead to cataract, a disease of protein aggregation. In the present investigation, we studied the lens crystallin profile of the tropical freshwater catfish Rita rita. Profiles of lens crystallins were analyzed and crystallin proteome maps of Rita rita were generated for the first time. alphaA-crystallins, member of the alpha-crystallin family, which are molecular chaperons and play crucial role in maintaining lens transparency were identified by 1- and 2-D immunoblot analysis with anti-alphaA-crystallin antibody. Two protein bands of 19-20 kDa were identified as alphaA-crystallins on 1-D immunoblots and these bands separated into 10 discrete spots on 2-D immunoblot. However, anti-alphaB-crystallin and antiphospho-alphaB-crystallin antibodies were not able to detect any immunoreactive bands on 1- and 2-D immunoblots, indicating alphaB-crystallin was either absent or present in extremely low concentration in Rita rita lens. Thus, Rita rita alpha-crystallins are more like that of the catfish Clarias batrachus and the mammal kangaroo in its alphaA- and alphaB-crystallin content (contain low amount from 5-9% of alphaB-crystallin) and unlike the dogfish, zebrafish, human, bovine and mouse alpha-crystallins (contain higher amount of alphaB-crystallin from 25% in mouse and bovine to 85% in dogfish). Results of the present study can be the baseline information for stimulating further investigation on Rita rita lens crystallins for comparative lens proteomics. Comparing and contrasting the alpha-crystallins of the dogfish and Rita rita may provide valuable information on the functional attributes of alphaA- and alphaB-isoforms, as

  1. Archival Search for METAL LINES in QUASAR LYMAN-ALPHA SYSTEMS

    NASA Astrophysics Data System (ADS)

    Tytler, David

    1995-07-01

    QSO Lyman-alpha forest absorption systems have traditionally been considered intergalactic primordial gas clouds, but new data suggest that many of them at high redshift contain metals with abundances of C/H eq -3, which means 10^-3 solar. We propose to search for metals in HST spectra of LyAlpha forest systems at low redshift. The search has two parts: first we look for 2 Sigma metal lines at the expected positions of known LyAlpha lines, and we estimate the number of chance identifications. Second, we align and coadd spectra at the expected positions of the metal lines in each LyAlpha systems. We will look for the strong metal lines {C IV, O VI, N V, C III, Mg X and Ne VIII} in this composite. There are five reasons why we expect to find metals. {1} We are finding C IV in LyAlpha clouds at high z. {2} The number of C IV systems increases with decreasing redshift. {3} In general, abundances should be higher at low z. {4} We are now identifying many low redshift LyAlpha lines with the outer regions of galaxies. {5} O VI should be stronger than C IV. O VI is not easily seen at high z because of confusion in the LyAlpha forest, but it will be accessible in HST data. With 100 LyAlpha systems from the HST spectra of 167 QSOs we should reach a limit of C/H <= -2.3 for C IV, and worse for other ions. If we find metals, we begin to determine if they are more common in LyAlpha clouds which are associated with galaxies, and especially whether they occur in clouds which are intergalactic.

  2. Theoretical quasar emission-line profiles. I - Curve-of-growth effects on observed profiles

    NASA Technical Reports Server (NTRS)

    Hubbard, E. N.; Puetter, R. C.

    1983-01-01

    Radiative transfer effects are examined in an investigation of the kinematics of quasar and Seyfert emission-line regions with pancake cloud geometries. Consideration is given only to the effects of limb brightening with the aspect angle of pancake clouds, assuming that all lines lie on a single portion of the curve of growth. This effect is coupled with several simple but plausible ensemble geometries and dynamics, and a number of theoretical emission-line profiles have been generated. It is shown that these profiles differ substantially depending on both the ensemble geometry and the portion of the curve of growth considered; for a given ensemble geometry, optically thick line profiles are different from optically thick profiles. It is shown that, for radiatively driven clouds, ensembles of clouds which have maximum velocities approaching the terminal velocity of the acceleration mechanism never produce acceptable profiles unless the cloud luminosity is a strongly decreasing function of radius.

  3. Characterization of homogeneous recombinant rat ovarian 20alpha-hydroxysteroid dehydrogenase: fluorescent properties and inhibition profile.

    PubMed Central

    Ma, H; Penning, T M

    1999-01-01

    In rat ovary, 20alpha-hydroxysteroid dehydrogenase (20alpha-HSD), a member of the aldo-keto reductase (AKR) superfamily, converts progesterone into the inactive progestin 20alpha-hydroxyprogesterone and has been implicated in the termination of pregnancy. Here we report a convenient overexpression system that permits the purification of milligram quantities of homogeneous recombinant 20alpha-HSD with wild-type enzyme activity. The availability of this enzyme has permitted detailed kinetic, inhibition and fluorescence analyses. The enzyme exhibited narrow steroid specificity, catalysing reactions only at C-20; it reduced progesterone and 17alpha-hydroxyprogesterone and oxidized 20alpha-hydroxypregnanes. It also turned over common AKR substrates, such as 9, 10-phenanthrenequinone and 4-nitrobenzaldehyde. The intrinsic fluorescence spectrum of 20alpha-HSD was characterized and was quenched on the binding of NADP(H), yielding a KNADPd of 0.36 microM and a KNADPHd of 0.64 microM. NADP(H) binding generated an energy transfer band that could not be quenched by steroids. Inhibition studies conducted with non-steroidal and steroidal anti-inflammatory drugs and synthetic oestrogens indicated that even though rat ovarian 20alpha-HSD and rat liver 3alpha-hydroxysteroid dehydrogenase (3alpha-HSD) share more than 67% amino acid identity, their inhibition profiles are markedly different. Unlike 3alpha-HSD, most of these compounds did not inhibit 20alpha-HSD. Only meclofenamic acid and hexoestrol were potent competitive inhibitors for 20alpha-HSD, yielding K(i) values of 18.9 and 14.3 microM respectively. These studies suggest that selective non-steroidal AKR inhibitors could be developed for 20alpha-HSD that might be useful in maintaining pregnancy and that specific inhibitors might be developed from either N-phenylanthranilates or biphenols. PMID:10417353

  4. Characterization of homogeneous recombinant rat ovarian 20alpha-hydroxysteroid dehydrogenase: fluorescent properties and inhibition profile.

    PubMed

    Ma, H; Penning, T M

    1999-08-01

    In rat ovary, 20alpha-hydroxysteroid dehydrogenase (20alpha-HSD), a member of the aldo-keto reductase (AKR) superfamily, converts progesterone into the inactive progestin 20alpha-hydroxyprogesterone and has been implicated in the termination of pregnancy. Here we report a convenient overexpression system that permits the purification of milligram quantities of homogeneous recombinant 20alpha-HSD with wild-type enzyme activity. The availability of this enzyme has permitted detailed kinetic, inhibition and fluorescence analyses. The enzyme exhibited narrow steroid specificity, catalysing reactions only at C-20; it reduced progesterone and 17alpha-hydroxyprogesterone and oxidized 20alpha-hydroxypregnanes. It also turned over common AKR substrates, such as 9, 10-phenanthrenequinone and 4-nitrobenzaldehyde. The intrinsic fluorescence spectrum of 20alpha-HSD was characterized and was quenched on the binding of NADP(H), yielding a KNADPd of 0.36 microM and a KNADPHd of 0.64 microM. NADP(H) binding generated an energy transfer band that could not be quenched by steroids. Inhibition studies conducted with non-steroidal and steroidal anti-inflammatory drugs and synthetic oestrogens indicated that even though rat ovarian 20alpha-HSD and rat liver 3alpha-hydroxysteroid dehydrogenase (3alpha-HSD) share more than 67% amino acid identity, their inhibition profiles are markedly different. Unlike 3alpha-HSD, most of these compounds did not inhibit 20alpha-HSD. Only meclofenamic acid and hexoestrol were potent competitive inhibitors for 20alpha-HSD, yielding K(i) values of 18.9 and 14.3 microM respectively. These studies suggest that selective non-steroidal AKR inhibitors could be developed for 20alpha-HSD that might be useful in maintaining pregnancy and that specific inhibitors might be developed from either N-phenylanthranilates or biphenols. PMID:10417353

  5. H I Lyman-alpha in the sun - The effects of partial redistribution in the line wings

    NASA Technical Reports Server (NTRS)

    Roussel-Dupre, D.

    1983-01-01

    A form for the Lyman-alpha redistribution function that is modified to include the effects of collisional coupling between different energy states is presented. It is noted that this extends the work of Yelnik et al. (1981) and Roussel-Dupre(1982). By separating the source function into its primary components at all heights, the formation of Lyman-alpha radiation is investigated in detail. Frequencies in the line wing can be mapped back in such a way that the heights of formation for a change in lambda of plus or minus 0.5-6 A span the entire solar chromosphere. The usefulness of the Lyman-alpha wing as an atmospheric probe, however, is limited by long thermalization lengths, which result from almost coherent scattering outside of the Doppler core. When the line profiles calculated from the chromospheric models of Vernazza et al. (1981) are compared with the quiet-sun observations of Roussel-Dupre, agreement is found in integrated core intensities and in the line wing shape and normalized center-to-limb behavior. The calculated wing intensities, however, are a factor of four too small.

  6. Stark broadening of high-principal-quantum-number n-alpha lines of hydrogen.

    NASA Technical Reports Server (NTRS)

    Lasalle, T. R.; Nee, T.-J.; Griem, H. R.

    1973-01-01

    High n-alpha lines (transitions n + 1 to n) with quantum numbers n between 50 and 250 have been observed emanating from galactic H II regions where the electron density and temperature are about 1000/cu cm and 1 eV, respectively. High n-alpha lines have not previously been seen in the laboratory where fairly homogeneous plasmas may be produced and relatively precise measurements of electron densities and temperatures can be made. The present work describes experiments where the first members of the hydrogen line series with lower states n = 10, 11, 12, and 13 have been detected in a laboratory plasma. The width of the 12-alpha line at 88.7 microns could be measured and was consistent with calculated broadening from elastic electron collisions and quasi-static ion effects.

  7. Speed-dependent spectral line profile including line narrowing and mixing

    NASA Astrophysics Data System (ADS)

    Kochanov, Victor P.

    2016-07-01

    A line profile model was developed that accounts for all essential underlying physical mechanisms. The model is based on the quantum-mechanical collision integral kernel calculated for intermolecular interaction potentials ∝r-n with n=3…6 where r is the distance between colliding molecules. It was shown that collisions of molecules with scattering on classical small angles flatten the line profile. The relative flattening reaches 10% for n=3 and has a smaller value, ~2%, for n=6 in conditions of inhomogeneous line broadening. An algebraic expression for the line profile was obtained, which allows processing recorded spectra with preliminary estimation and constraint of some of the profile's parameters.

  8. Neuronal-type alpha-bungarotoxin receptors and the alpha 5-nicotinic receptor subunit gene are expressed in neuronal and nonneuronal human cell lines.

    PubMed Central

    Chini, B; Clementi, F; Hukovic, N; Sher, E

    1992-01-01

    alpha-Bungarotoxin (alpha Bgtx) is a toxin known to interact with muscle nicotinic receptors and with some neuronal nicotinic receptors. We show that alpha Bgtx binding sites are also expressed in nonmuscle and nonneuronal human cells, including small cell lung carcinoma and several epithelial cell lines. These receptors are immunologically related to the alpha Bgtx receptors of unknown function described in the nervous system and in the IMR32 neuroblastoma cell line and are distinct from muscle nicotinic receptors. We have also cloned from IMR32 cells the human alpha 5-nicotinic receptor subunit, which is supposed to participate in the formation of alpha Bgtx receptors. Transcripts corresponding to the alpha 5-subunit gene were found not only in neuroblastoma cells but also in all the cell lines expressing alpha Bgtx receptors, with the exception of the TE671 cell line, whose nicotinic receptor subunits are of the muscle type. We conclude that both alpha Bgtx receptors and the alpha 5-nicotinic subunit gene are not neuron-specific, as previously thought, but are expressed in a number of human cell lines of various origin. Images PMID:1542648

  9. Calculation of quasi-static helium triplet diffuse line profiles

    NASA Technical Reports Server (NTRS)

    Scott, C. D.

    1972-01-01

    Calculated spectral line profiles (intensity distributions) of the helium triplet diffuse series were obtained using the quasi-static approximation for ions and electrons. In these calculations, Doppler broadening, although negligible in most of the cases, was included as a device to avoid singularities. Plots and tabulations of the calculated profiles are presented, in addition to a discussion of the computational procedure and the validity of the calculations.

  10. Absorption Line Profiles for 39 Rapidly Rotating Stars

    NASA Astrophysics Data System (ADS)

    Stoeckley, T. R.; Carroll, R. W.; Miller, R. D.

    1984-05-01

    Absorption lines of He II, HeI, MgII and other ions have been measured in 169 photographic coude spectra for 39 rapidly rotating B-type stars on the main sequence. All 1500 separate line profiles have been analysed with a procedure of differential corrections by least-squares to yield the following parameters and their error estimates: half-width, central depth, equivalent width and shape parameter. The shape parameter includes Voigt profiles and also `super-Gaussian' and `super-damping' profiles. Up to 15 separately measured line profiles in each star have been superimposed to yield better composite profiles with point scatter as small as 0.5 per cent. In addition, a preliminary value of V sin i is derived for each line of each star, and a mean value (including error bars) is derived for each star. Results are compared and discussed, with reference to forthcoming work incorporating stellar distortion, gravity darkening, and other second-order effects, which will allow determinations of axial inclination and differential rotation of individual stars, using the data sets presented here and elsewhere.

  11. Velocity profiles of high-excitation molecular hydrogen lines

    NASA Technical Reports Server (NTRS)

    Moorhouse, A.; Brand, P. W. J. L.; Geballe, T. R.; Burton, M. G.

    1990-01-01

    Profiles of three lines of molecular hydrogen near 2.2 microns, originating from widely spaced energy levels, have been measured at a resolution of 32 km/s at Peak 1 in the Orion molecular outflow. The three lines, 1 - 0 S(1), 2 - 1 S(1), and 3 - 2 S(3), are found to have identical profiles. This result rules out any significant contribution to the population of the higher energy levels of molecular hydrogen at Peak 1 by fluorescence, and is generally consistent with emission from multiple J-type shocks.

  12. DNA profiling and characterization of animal cell lines.

    PubMed

    Stacey, Glyn N; Byrne, Ed; Hawkins, J Ross

    2014-01-01

    The history of the culture of animal cell lines is littered with published and much unpublished experience with cell lines that have become switched, mislabelled, or cross-contaminated during laboratory handling. To deliver valid and good quality research and to avoid waste of time and resources on such rogue lines, it is vital to perform some kind of qualification for the provenance of cell lines used in research and particularly in the development of biomedical products. DNA profiling provides a valuable tool to compare different sources of the same cells and, where original material or tissue is available, to confirm the correct identity of a cell line. This chapter provides a review of some of the most useful techniques to test the identity of cells in the cell culture laboratory and gives methods which have been used in the authentication of cell lines. PMID:24297409

  13. Polarized Line Profiles as Diagnostics of Circumstellar Geometry in Type IIn Supernovae

    NASA Astrophysics Data System (ADS)

    Hoffman, J. L.; Nugent, P.; Leonard, D. C.; Filippenko, A. V.

    2005-12-01

    Supernovae of type IIn possess spectral signatures that indicate an intense interaction between the supernova ejecta and surrounding dense circumstellar material, presumably cast off by the star in pre-explosion mass-loss episodes. Studying this interaction can yield clues to the nature of Type IIn progenitors and their mass loss history. In particular, polarization spectra of Type IIn's show complex line polarization and position angle features that arise from a combination of geometrical and optical effects. We investigate ways in which polarized H alpha line profiles can be produced at early times in the evolution of a Type IIn supernova by modeling the transfer of the photospheric H alpha line through circumstellar shells with various geometrical configurations and optical characteristics. Electron scattering combined with hydrogen absorption, thermal emission, and resonance line effects produces a variety of polarized line shapes. We compare our results with high-quality spectropolarimetric observations of Type IIn supernovae, and show how they can be used to constrain the characteristics of the circumstellar material in these objects. J.L. Hoffman is supported by an NSF Astronomy & Astrophysics Postdoctoral Fellowship under award AST-0302123. This research uses the resources of the National Energy Research Scientific Computing Center, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC03-76SF00098.

  14. Molecular profiling reveals primary mesothelioma cell lines recapitulate human disease.

    PubMed

    Chernova, T; Sun, X M; Powley, I R; Galavotti, S; Grosso, S; Murphy, F A; Miles, G J; Cresswell, L; Antonov, A V; Bennett, J; Nakas, A; Dinsdale, D; Cain, K; Bushell, M; Willis, A E; MacFarlane, M

    2016-07-01

    Malignant mesothelioma (MM) is an aggressive, fatal tumor strongly associated with asbestos exposure. There is an urgent need to improve MM patient outcomes and this requires functionally validated pre-clinical models. Mesothelioma-derived cell lines provide an essential and relatively robust tool and remain among the most widely used systems for candidate drug evaluation. Although a number of cell lines are commercially available, a detailed comparison of these commercial lines with freshly derived primary tumor cells to validate their suitability as pre-clinical models is lacking. To address this, patient-derived primary mesothelioma cell lines were established and characterized using complementary multidisciplinary approaches and bioinformatic analysis. Clinical markers of mesothelioma, transcriptional and metabolic profiles, as well as the status of p53 and the tumor suppressor genes CDKN2A and NF2, were examined in primary cell lines and in two widely used commercial lines. Expression of MM-associated markers, as well as the status of CDKN2A, NF2, the 'gatekeeper' in MM development, and their products demonstrated that primary cell lines are more representative of the tumor close to its native state and show a degree of molecular diversity, thus capturing the disease heterogeneity in a patient cohort. Molecular profiling revealed a significantly different transcriptome and marked metabolic shift towards a greater glycolytic phenotype in commercial compared with primary cell lines. Our results highlight that multiple, appropriately characterised, patient-derived tumor cell lines are required to enable concurrent evaluation of molecular profiles versus drug response. Furthermore, application of this approach to other difficult-to-treat tumors would generate improved cellular models for pre-clinical evaluation of novel targeted therapies. PMID:26891694

  15. Molecular profiling reveals primary mesothelioma cell lines recapitulate human disease

    PubMed Central

    Chernova, T; Sun, X M; Powley, I R; Galavotti, S; Grosso, S; Murphy, F A; Miles, G J; Cresswell, L; Antonov, A V; Bennett, J; Nakas, A; Dinsdale, D; Cain, K; Bushell, M; Willis, A E; MacFarlane, M

    2016-01-01

    Malignant mesothelioma (MM) is an aggressive, fatal tumor strongly associated with asbestos exposure. There is an urgent need to improve MM patient outcomes and this requires functionally validated pre-clinical models. Mesothelioma-derived cell lines provide an essential and relatively robust tool and remain among the most widely used systems for candidate drug evaluation. Although a number of cell lines are commercially available, a detailed comparison of these commercial lines with freshly derived primary tumor cells to validate their suitability as pre-clinical models is lacking. To address this, patient-derived primary mesothelioma cell lines were established and characterized using complementary multidisciplinary approaches and bioinformatic analysis. Clinical markers of mesothelioma, transcriptional and metabolic profiles, as well as the status of p53 and the tumor suppressor genes CDKN2A and NF2, were examined in primary cell lines and in two widely used commercial lines. Expression of MM-associated markers, as well as the status of CDKN2A, NF2, the ‘gatekeeper' in MM development, and their products demonstrated that primary cell lines are more representative of the tumor close to its native state and show a degree of molecular diversity, thus capturing the disease heterogeneity in a patient cohort. Molecular profiling revealed a significantly different transcriptome and marked metabolic shift towards a greater glycolytic phenotype in commercial compared with primary cell lines. Our results highlight that multiple, appropriately characterised, patient-derived tumor cell lines are required to enable concurrent evaluation of molecular profiles versus drug response. Furthermore, application of this approach to other difficult-to-treat tumors would generate improved cellular models for pre-clinical evaluation of novel targeted therapies. PMID:26891694

  16. Retinoic acid modulates RAR alpha and RAR beta receptors in human glioma cell lines.

    PubMed

    Carpentier, A F; Leonard, N; Lacombe, J; Zassadowski, F; Padua, R A; Degos, L; Daumas-Duport, C; Chomienne, C

    1999-01-01

    To identify retinoic acid (RA) signalling pathways involved in growth and differentiation in cells of the glial lineage, two human glioma ceh lines were studied. The three RA receptors (RARs) mRNAs were constitutively expressed, and of the three RXRs, RXR beta appeared predominant. Western blotting analysis confirmed the constitutive expression of RAR alpha and RAR beta. Treatment with all-trans-RA induced morphological changes in the two cell lines, which progressed from their normal pattern of randomly oriented spindle-shaped cells to fibroblast-like glial cells. RA up-regulated RAR alpha and RAR beta mRNAs in both cell lines. Interestingly, RA treatment up-regulated RAR beta proteins but not RAR alpha proteins, suggesting post-transcriptional regulations of RAR transcripts in glioma cells. PMID:10652610

  17. Emission Line Profiles of Warped Disks in a Kerr Spacetime

    NASA Astrophysics Data System (ADS)

    Yang, X. L.; Wang, J. C.

    2013-11-01

    The computations of emission line profiles of a warped disk around a Kerr black hole are discussed in this paper, which can be divided into two parts. In the first part, the geodesic motion in a Kerr spacetime and its equations with integral forms are presented. The equations are solved with the Weierstrass' elliptic functions and integrals. Making use of the elliptic functions, the Boyer-Lindquist (B-L) coordinates and the affine parameter σ are expressed semi-analytically as the functions of the parameter p. Then a code named ynogk (Yunnan Observatory Geodesic Kerr) is introduced based on the above discussions to calculate the null geodesics fast in a Kerr spacetime. In the second part of the paper, as an application of ynogk, the emission line profiles of a warped disk are investigated in detail. Here the structure model of the disk is specified according to the results of Bardeen and Petterson in 1975, and the line profiles are computed with the ray-tracing method. Finally, the discussions and conclusions of the computing results are presented, which indicate that the line profiles are dependent mainly on the inclination and azimuthal angles of the observer and the index of emissivity, and have the three-horn even multiple-horn structures comparing to those of a standard thin accretion disk.

  18. 20. GEOLOGY, PLAN AND PROFILE, SHOWING LINED AND UNLINED SECTIONS, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    20. GEOLOGY, PLAN AND PROFILE, SHOWING LINED AND UNLINED SECTIONS, AND DETAILED TYPICAL CROSS SECTIONS. Leeds, Hill, Barnard & Jewett drawing, no number, revised 3-20-42. - Salinas River Project, Cuesta Tunnel, Southeast of U.S. 101, San Luis Obispo, San Luis Obispo County, CA

  19. The relativistic Doppler broadening of the line absorption profile

    NASA Astrophysics Data System (ADS)

    Kichenassamy, S.; Krikorian, R.; Nikogosian, A.

    1982-06-01

    The classical results of Doppler broadening of the line absorption profile are generalized to a relativistic gas in thermal equilibrium by taking into account the relativistic variance of the volume absorption coefficients of the gas, as derived by L. H. Thomas. This variance produces a small correction, even in the non-relativistic approximation.

  20. Modeling the detailed Lyman-α line profile

    NASA Astrophysics Data System (ADS)

    Schoell, Micha; Haberreiter, Margit; Schmutz, Werner; Shapiro, Alexander

    2013-04-01

    The variability of the solar spectral irradiance is an important driver in global circulation models. The Lyman-α spectral line is of particular interest as it exhibits a high variability and has strong impact on the ozone concentration and temperature in the Earth's atmosphere. For a complete understanding of the variation of the Lyman-α line it is important to be able to model its detailed line profile. We present recent work on the improvement of the modeling efforts of this important spectral line. We employ an updated version of the COde for Solar Irradiance (COSI) along with existing model atmospheres with an improved implementation of the temperature and turbulent velocity in the chromosphere and transition region. With the latest modifications we are able to reproduce high resolution observations taken with the SUMER instrument onboard of SOHO. This is an important step towards the reliable reconstruction of the irradiance in the Lyman-α spectral line.

  1. P CYGNI PROFILES OF MOLECULAR LINES TOWARD ARP 220 NUCLEI

    SciTech Connect

    Sakamoto, Kazushi; Aalto, Susanne; Black, John H.; Conway, John E.; Costagliola, Francesco; Wilner, David J.; Peck, Alison B.; Spaans, Marco; Wang, Junzhi; Wiedner, Martina C.

    2009-08-01

    We report {approx}100 pc (0.''3) resolution observations of (sub)millimeter HCO{sup +} and CO lines in the ultraluminous infrared galaxy Arp 220. The lines peak at two merger nuclei, with HCO{sup +} being more spatially concentrated than CO. Asymmetric line profiles with blueshifted absorption and redshifted emission are discovered in HCO{sup +}(3-2) and (4-3) toward the two nuclei and in CO(3-2) toward one nucleus. We suggest that these P Cygni profiles are due to {approx}100 km s{sup -1} outward motion of molecular gas from the nuclei. This gas is most likely outflowing from the inner regions of the two nuclear disks rotating around individual nuclei, clearing the shroud around the luminosity sources there.

  2. Low redshift Lyman alpha absorption lines and the dark matter halos of disk galaxies

    NASA Technical Reports Server (NTRS)

    Maloney, Philip

    1993-01-01

    Recent observations using the Hubble Space Telescope of the z = 0.156 QSO 3C 273 have discovered a surprisingly large number of Ly-alpha absorption lines. In particular, Morris et al. found 9 certain and 7 possible Ly-alpha lines with equivalent widths above 25 mA. This is much larger (by a factor of 5-10) than the number expected from extrapolation of the high-redshift behavior of the Ly-alpha forest. Within the context of pressure-confined models for the Ly-alpha clouds, this behavior can be understood if the ionizing background declines sharply between z is approximately 2 and z is approximately 0. However, this requires that the ionizing photon flux drop as rapidly as the QSO volume emissivity; moreover, the absorbers must have a space density n(sub O) is approximately 2.6(N/10)h/((D/100 kpc)(sup 2)) Mpc(sup -3) where D is the present-day diameter of the absorbers. It is somewhat surprising that such necessarily fragile objects could have survived in such numbers to the present day. It is shown that it is plausible that the atomic hydrogen extents of spiral and irregular galaxies are large enough to produce the observed number of Ly-alpha absorption lines toward 3C 273, and that the neutral column densities and doppler b-values expected under these conditions fall in the range found by Morris et al. (1991).

  3. Line profile variability and tidal flows in eccentric binaries

    NASA Astrophysics Data System (ADS)

    Koenigsberger, Gloria; Moreno, Edmundo; Harrington, David M.

    2011-07-01

    A number of binary systems display enhanced activity around periastron passage which may be caused by the tidal interactions. We have developed a time-marching numerical calculation from first principles that computes the surface deformations, the perturbed velocity field, the energy dissipation rates and the photospheric line-profiles in a rotating star with a binary companion in an eccentric orbit. The method consists of solving the equations of motion for a grid of elements covering the surface of star m1, subjected to gravitational, centrifugal, Coriolis, gas pressure and viscous shear forces (Moreno et al. 1999, Toledano et al. 2007, Moreno et al. 2011). At selected times during the orbital cycle, the velocities of surface elements on the visible hemisphere of the star are projected along the observer's line of sight and the photospheric line-profile calculation is performed (Moreno et al. 2005). Direct comparison with observational photospheric line profile variability is then possible, showing that the general features are reproduced (Harrington et al. 2009). In this poster we show the example of a highly eccentric system (e = 0.8, P = 15 d). The surface deformation changes rapidly from that of an ``equilibrium tide'' at periastron to one with smaller-scale structure shortly thereafter. The computed line profiles display the presence of large blue-to-red migrating ``bumps'' around periastron, with smaller scale structure appearing later in the orbital cycle. Because the growth rate of the surface perturbations increases very abruptly at periastron, instabilities are expected to arise which may cause the observed activity and mass-ejection events around this orbital phase.

  4. EVOLUTION OF [O III] {lambda}5007 EMISSION-LINE PROFILES IN NARROW EMISSION-LINE GALAXIES

    SciTech Connect

    Wang, J.; Mao, Y. F.; Wei, J. Y.

    2011-11-01

    The active galactic nucleus (AGN)-host co-evolution issue is investigated here by focusing on the evolution of the [O III] {lambda}5007 emission-line profile. A large sample of narrow emission-line galaxies is selected from the Max-Planck Institute for Astrophysics/Johns Hopkins University Sloan Digital Sky Survey DR7 catalog to simultaneously measure both the [O III] line profile and circumnuclear stellar population in an individual spectrum. By requiring that (1) the [O III] line signal-to-noise ratio is larger than 30 and (2) the [O III] line width is larger than the instrumental resolution by a factor of two, our sample is narrowed down to 2333 Seyfert galaxies/LINERs (AGNs), 793 transition galaxies, and 190 star-forming galaxies. In addition to the commonly used profile parameters (i.e., line centroid, relative velocity shift, and velocity dispersion), two dimensionless shape parameters, skewness and kurtosis, are used to quantify the line shape deviation from a pure Gaussian function. We show that the transition galaxies are systematically associated with narrower line widths and weaker [O III] broad wings than the AGNs, which implies that the kinematics of emission-line gas are different in the two kinds of objects. By combining the measured host properties and line shape parameters, we find that the AGNs with stronger blue asymmetries tend to be associated with younger stellar populations. However, a similar trend is not identified in the transition galaxies. The failure likely results from a selection effect in which the transition galaxies are systematically associated with younger stellar populations than the AGNs. The evolutionary significance revealed here suggests that both narrow-line region kinematics and outflow feedback in AGNs co-evolve with their host galaxies.

  5. Evolution of [O III] λ5007 Emission-line Profiles in Narrow Emission-line Galaxies

    NASA Astrophysics Data System (ADS)

    Wang, J.; Mao, Y. F.; Wei, J. Y.

    2011-11-01

    The active galactic nucleus (AGN)-host co-evolution issue is investigated here by focusing on the evolution of the [O III] λ5007 emission-line profile. A large sample of narrow emission-line galaxies is selected from the Max-Planck Institute for Astrophysics/Johns Hopkins University Sloan Digital Sky Survey DR7 catalog to simultaneously measure both the [O III] line profile and circumnuclear stellar population in an individual spectrum. By requiring that (1) the [O III] line signal-to-noise ratio is larger than 30 and (2) the [O III] line width is larger than the instrumental resolution by a factor of two, our sample is narrowed down to 2333 Seyfert galaxies/LINERs (AGNs), 793 transition galaxies, and 190 star-forming galaxies. In addition to the commonly used profile parameters (i.e., line centroid, relative velocity shift, and velocity dispersion), two dimensionless shape parameters, skewness and kurtosis, are used to quantify the line shape deviation from a pure Gaussian function. We show that the transition galaxies are systematically associated with narrower line widths and weaker [O III] broad wings than the AGNs, which implies that the kinematics of emission-line gas are different in the two kinds of objects. By combining the measured host properties and line shape parameters, we find that the AGNs with stronger blue asymmetries tend to be associated with younger stellar populations. However, a similar trend is not identified in the transition galaxies. The failure likely results from a selection effect in which the transition galaxies are systematically associated with younger stellar populations than the AGNs. The evolutionary significance revealed here suggests that both narrow-line region kinematics and outflow feedback in AGNs co-evolve with their host galaxies.

  6. Profile, Current, and Halo Monitors of the PROSCAN Beam Lines

    SciTech Connect

    Doelling, Rudolf

    2004-11-10

    PROSCAN, an extended medical facility using proton beams for the treatment of deep-seated tumors and eye melanoma, is under construction at PSI. Ionization chambers and secondary emission monitors will be used as current monitors and in a multi-strip configuration as profile monitors at the PROSCAN beam lines. A thin and a thick version of these detectors are in preparation as well as a 4-segment ionization chamber to detect the beam halo. Electromagnetic and microphonic noise from the signal and high-voltage cables, saturation due to recombination, and the evaluation of the profiles are discussed, as well as measures to detect failures of the detectors during operation.

  7. The Deepest Spectrum in the Universe? Line Emission from Lyman-alpha Clouds at z 3

    NASA Astrophysics Data System (ADS)

    Bunker, Andrew J.; Rauch, M.; Haehnelt, M.; Becker, G.; Marleau, F.; Graham, J.; Research, European; Inter-Galactic Medium, Training Network on the

    2007-12-01

    We present the results of an extremely deep long-slit optical spectroscopic search for low-luminosity Lyman-alpha emitters. Over several years we have accumulated 150-hours integration on a single field with 8-10m telescopes (VLT/FORS2, Gemini/GMOS and Keck/LRIS) at a spectral resolution of 300km/s. This is the deepest spectrum ever obtained - our 1 sigma sensitivity to line emission in a 1 arcsec2 aperture is 1019erg/cm2/s. We have significant detections of 30 emission line objects, which are most likely Lyman-alpha emitters at 2.7line emission may be powered by star formation in conditions of low metallicity and low dust, or alternatively may arise from cooling radiation or perhaps external photoionzation by the metagalactic Lyman continuum background. Many of the line emitters are significantly spatially extended (with median size 4arcsec, 30kpc) and could plausibly be the host population of the high column density Lyman-alpha absorption clouds seen in QSO spectra (the Damped Lyman-alpha Systems and the Lyman-Limit Systems).

  8. Observation and Analysis of High Resolution Optical Line Profiles in Comet Hyakutake (C/1996 B2)

    NASA Astrophysics Data System (ADS)

    Combi, M. R.; Cochran, A. L.

    1997-07-01

    Very high resolution (R=200,000) and high signal-to-noise echelle spectra were obtained of comet C/Hyakutake 1996 B2 using the 2DCoude spectrograph on the 2.7 m telescope at McDonald Observatory during late March and early April 1996. Doppler resolved profiles are presented for individual lines of most of the major optical neutral species: CN, C_2, O((1) D) at 6300{ Angstroms}, O((1) S) at 5577{ Angstroms} , NH_2, and H Balmer-alpha at 6563{ Angstroms}. These may be the first ever to be published for CN, C_2, and O((1) S). In all cases the instrument spectral function is smaller than the intrinsic line widths of the individual cometary lines, so the observations provide clear signatures of lines which are Doppler broadened by different combinations of the coma expansion, exothermic photochemical ejection speeds, and collisional thermalization. For modeling analysis of these data we have used a hybrid fluid/kinetic Monte Carlo approach which can realistically include all of the relevant physical/chemical processes important for shaping the spectral lines. Because of the very short lifetime of the NH_2 parent (NH_3), the NH_2 is collisionally thermalized and provides an excellent probe of the outflow of the expanding coma. Because O((1) D) atoms in the region sampled are produced mainly by the photodissociation of water and the resulting photon is a prompt emission, the line retains signatures of both the basic coma expansion velocity and the 1.6 km s(-1) ejection speed of the O({(1}) D) atoms. The O((1) S) profile is consistent with that for the O((1) D). The profiles of CN and C_2 are somewhat broadened (CN more so than C_2), compared with NH_2, and seem to require a combination of coma expansion and the exothermic ejection speed they receive upon their production. Although the H Balmer-alpha line is complicated by a chance coincidence of an H_2O(+) line and optical depth effects in the solar Lyman-beta which pumps the Balmer-alpha emission, the spread of the wings

  9. FIR line profiles as probes of warm gas dynamics

    NASA Astrophysics Data System (ADS)

    Betz, A. L.; Boreiko, R. T.

    Measurements of the shapes, velocities, and intensities of FIR lines all help to probe the dynamics, physical associations, and excitation conditions of warm gas in molecular clouds. With this in mind, we have observed the J=9-8, 12-11,14-13, and 16-15 lines of (12)CO and the 158 micron line of C II in a number of positions in 4 selected clouds. The data were obtained with a laser heterodyne spectrometer aboard NASA's Kuiper Airborne Observatory. Line measurements at 0.6 km/s resolution allow us to resolve the profiles completely, and thereby to distinguish between UV-and shock-heating mechanisms for the high-excitation gas. For CO, the high-J linewidths lie in the range of 4-20 km/s (FWHM), similar to those observed for low-J (J less than 4) transitions in these sources. This correspondence suggests that the hotter gas (T = 200-600 K) is dynamically linked to the quiescent gas component, perhaps by association with the UV-heated peripheries of the numerous cloud clumps. Much of the C II emission is thought to emanate from these cloud peripheries, but the line profiles generally do not match those seen in CO. None of the observed sources show any evidence in high-J (12)CO emission for shock-excitation (i.e., linewidths greater than 30 km/s).

  10. Synthetic line profiles of rotationally distorted hot-star winds

    NASA Astrophysics Data System (ADS)

    Harries, Tim J.

    2000-07-01

    A new Monte Carlo stellar wind radiative-transfer code is presented. The code employs a three-dimensional opacity grid, and fully treats polarization and multiple scattering. Either Mie or Rayleigh scattering phase matrices may be used, and the line-transfer is treated by means of the Solobolev approximation. Variance reduction techniques are employed to increase computational efficiency. The results of several tests of the code are reported. It is confirmed that no continuum polarization is produced in the spherically symmetric wind case, and that the line profiles computed match those computed using established radiative-transfer codes. The continuum polarization produced by a latitudinally structured low-density wind is found to be in good agreement with that predicted by the single-scattering analytical treatment of Fox, while in the higher density regime the polarizations are consistent with the multiple-scattering code given by Hillier. Two illustrative applications of the code are described, using the wind parameters of ζ Puppis [O4I(n)f] as the base model. In the first the effect on the line profile of a corotating spiral density enhancement is examined. It is found that the spiral gives line profile variations on the order of 5 per cent, and that it produces an S-wave-like pattern as a function of rotational phase. It is noted that the accelerations described by the spiral wave may mimic those produced by tangentially accelerating wind clumps. The variable polarization produced by the spiral is found to have an amplitude of 0.1 per cent, with two maxima per rotational period in phase with the line emission modulation. The second application investigates the profiles and polarization produced in a clumped wind. Although the parameters of the discrete wind clumps are necessarily arbitrary, it is found that a clumped-wind model reproduces the level of spectroscopic variability found by Eversberg et al. It is shown that the wind emission `bumps' produced in

  11. Sodium D-line emission from Io - Comparison of observed and theoretical line profiles

    NASA Technical Reports Server (NTRS)

    Carlson, R. W.; Matson, D. L.; Johnson, T. V.; Bergstralh, J. T.

    1978-01-01

    High-resolution spectra of the D-line profiles have been obtained for Io's sodium emission cloud. These lines, which are produced through resonance scattering of sunlight, are broad and asymmetric and can be used to infer source and dynamical properties of the sodium cloud. In this paper we compare line profile data with theoretical line shapes computed for several assumed initial velocity distributions corresponding to various source mechanisms. We also examine the consequences of source distributions which are nonuniform over the surface of Io. It is found that the experimental data are compatible with escape of sodium atoms from the leading hemisphere of Io and with velocity distributions characteristic of sputtering processes. Thermal escape and simple models of plasma sweeping are found to be incompatible with the observations.

  12. Prediction of the fusion alpha density profile in ITER from local marginal stability to Alfvén eigenmodes

    NASA Astrophysics Data System (ADS)

    Waltz, R. E.; Bass, E. M.

    2014-10-01

    A simple radial transport code for predicting the fusion alpha density profiles in an ITER burning plasma unstable to Alfvén eigenmodes (AEs) is illustrated. This extends earlier work by Angioni et al (2009 Nucl. Fusion 49 055013) treating the fusion alpha transport from high-n micro-turbulence to include marginal stability (or ‘stiff’) transport from alpha-driven low-n AEs. The local alpha density gradient AE thresholds are provided by physically realistic linear gyrokinetic code simulations. The transported alpha density profiles are compared to the alpha classical slowing-down profiles dependent on the birth rate source profiles. The base case thermal plasma (and hence source) profiles are taken from a theory-based core transport and H-mode pedestal prediction of ITER performance by Kinsey et al (2011 Nucl. Fusion 51 083001). The distinction between the alpha particle and the much smaller alpha energy transport loss is emphasized. The AE transport is localized to the mid-core radii with the high-n micro-turbulence controlling the transport loss of low energy alphas at the edge. Edge energy loss is about 100-fold smaller than particle loss. Even with the worst case boundary condition, only about 0.1% of net heating is lost and escaping alphas can be characterized as very hot helium.

  13. Hydrogen transport diagnostics by atomic and molecular emission line profiles simultaneously measured for large helical device

    SciTech Connect

    Fujii, K.; Shikama, T.; Hasuo, M.; Goto, M.; Morita, S.

    2013-01-15

    We observe the Balmer-{alpha}, -{beta}, and -{gamma} lines of hydrogen atoms and Q branches of the Fulcher-{alpha} band of hydrogen molecules simultaneously with their polarization resolved for large helical device. From the fit including the line splits and the polarization dependences by the Zeeman effect, the emission locations, intensities, and the temperatures of the atoms and molecules are determined. The emission locations of the hydrogen atoms are determined outside but close to the last closed flux surface (LCFS). The results are consistent with a previous work (Phys. Plasmas 12, 042501 (2005)). On the other hand, the emission locations of the molecules are determined to be in the divertor legs, which is farer from those of the atoms. The kinetic energy of the atoms is 1 {approx} 20 eV, while the rotational temperature of molecules is {approx}0.04 eV. Additionally, substantial wings, which originate from high velocity atoms and are not reproduced by the conventional spectral analysis, are observed in the Balmer line profiles. We develop a one-dimensional model to simulate the transport of the atoms and molecules. The model reproduces the differences of the emission locations of the atoms and molecules when their initial temperatures are assumed to be 3 eV and 0.04 eV, respectively. From the model, the wings of the Balmer-{alpha} line is attributed to the high velocity atoms exist deep inside the LCFS, which are generated by the charge exchange collisions with hot protons there.

  14. Testing convection theories using Balmer line profiles of A, F, and G stars

    NASA Astrophysics Data System (ADS)

    Gardiner, R. B.; Kupka, F.; Smalley, B.

    1999-07-01

    We consider the effects of convection on the Balmer line profiles ({H_α} and {H_β}) of A, F, and G stars. The standard mixing-length theory (MLT) atlas9 models of Kurucz (1993), with and without overshooting, are compared to atlas9 models based on the turbulent convection theory proposed by Canuto & Mazzitelli (1991, 1992) and implemented by Kupka (1996), and the improved version of this model proposed by Canuto et al. (1996) also implemented by Kupka. The Balmer line profiles are a useful tool in investigating convection because they are very sensitive to the parameters of convection used in the stellar atmosphere codes. The {H_α} and {H_β} lines are formed at different depths in the atmosphere. The {H_α} line is formed just above the convection zone. The {H_β} line, however, is partially formed inside the convection zone. We have calculated the {T_eff} of observed stars by fitting Balmer line profiles to synthetic spectra and compared this to: (i) the {T_eff} of the fundamental stars; (ii) the {T_eff} of stars determined by the Infra-Red Flux Method and (iii) the {T_eff} determined by Geneva photometry for the stars in the Hyades cluster. We find that the results from the {H_α} and {H_β} lines are different, as expected, due to the differing levels of formation. The tests are inconclusive between three of the four models; MLT with no overshooting, CM and CGM models, which all give results in reasonable agreement with fundamental values. The results indicate that for the MLT theory with no overshooting it is necessary to set the mixing length parameter alpha equal to 0.5 for stars with {T_eff <= 6000} K or {T_eff >= 7000} K. However for stars with {6000} K{<= T_eff <= 7000} K the required value for the parameter is {alpha >= 1.25}. Models with overshooting are found to be clearly discrepant, consistent with the results with uvby photometry by Smalley & Kupka (1997). Based on observations made at the Observatorio del Roque de los Muchachos using the

  15. A Calibrated H-alpha Index to Monitor Emission Line Objects

    NASA Astrophysics Data System (ADS)

    Hintz, Eric G.; Joner, M. D.

    2013-06-01

    Over an 8 year period we have developed a calibrated H-alpha index, similar to the more traditional H-beta index, based on spectrophotometric observations (Joner & Hintz, 2013) from the DAO 1.2-m Telescope. While developing the calibration for this filter set we also obtained spectra of a number of emission line systems such as high mass x-ray binaries (HMXB), Be stars, and young stellar objects. From this work we find that the main sequence stars fill a very tight relation in the H-alpha/H-beta plane and that the emission line objects are easily detected. We will present the overall location of these emission line objects. We will also present the changes experiences by these objects over the course of the years of the project.

  16. The Atlantic Salmon MHC class II alpha and beta promoters are active in mammalian cell lines.

    PubMed

    Vestrheim, O; Lundin, M; Syed, M

    2007-01-01

    The major histocompatibility complex class II (MHCII) genes are only constitutively expressed in certain immune response cells such as B cells, macrophages, dendritic cells and other antigen presenting cells. This cell specific expression pattern and the presence of conserved regions such as the X-, X2-, Y-, and W-boxes make the MHCII promoters especially interesting as vector constructs. We tested whether the Atlantic salmon (Salmo salar L.) MHCII promoters can function in cell lines from other organisms. We found that the salmon MHCII alpha and MHCII beta promoters could drive expression of a LacZ reporter gene in adherent lymphoblast cell lines from dog (DH82) and rabbit (HybL-L). This paper shows that the promoters of Atlantic salmon MHCII alpha and beta genes can function in mammalian cell lines. PMID:17934904

  17. Predicting the Redshift 2 H-Alpha Luminosity Function Using [OIII] Emission Line Galaxies

    NASA Technical Reports Server (NTRS)

    Mehta, Vihang; Scarlata, Claudia; Colbert, James W.; Dai, Y. S.; Dressler, Alan; Henry, Alaina; Malkan, Matt; Rafelski, Marc; Siana, Brian; Teplitz, Harry I.; Bagley, Micaela; Beck, Melanie; Ross, Nathaniel R.; Rutkowski, Michael; Wang, Yun

    2015-01-01

    Upcoming space-based surveys such as Euclid and WFIRST-AFTA plan to measure Baryonic Acoustic Oscillations (BAOs) in order to study dark energy. These surveys will use IR slitless grism spectroscopy to measure redshifts of a large number of galaxies over a significant redshift range. In this paper, we use the WFC3 Infrared Spectroscopic Parallel Survey (WISP) to estimate the expected number of H-alpha emitters observable by these future surveys. WISP is an ongoing Hubble Space Telescope slitless spectroscopic survey, covering the 0.8 - 1.65 micrometers wavelength range and allowing the detection of H-alpha emitters up to z approximately equal to 1.5 and [OIII] emitters to z approximately equal to 2.3. We derive the H-alpha-[OIII] bivariate line luminosity function for WISP galaxies at z approximately equal to 1 using a maximum likelihood estimator that properly accounts for uncertainties in line luminosity measurement, and demonstrate how it can be used to derive the H-alpha luminosity function from exclusively fitting [OIII] data. Using the z approximately equal to 2 [OIII] line luminosity function, and assuming that the relation between H-alpha and [OIII] luminosity does not change significantly over the redshift range, we predict the H-alpha number counts at z approximately equal to 2 - the upper end of the redshift range of interest for the future surveys. For the redshift range 0.7 less than z less than 2, we expect approximately 3000 galaxies per sq deg for a flux limit of 3 x 10(exp -16) ergs per sec per sq cm (the proposed depth of Euclid galaxy redshift survey) and approximately 20,000 galaxies per sq deg for a flux limit of approximately 10(exp -16) ergs per sec per sq cm (the baseline depth of WFIRST galaxy redshift survey).

  18. Mg II line profiles of the Mira S Carinae

    NASA Technical Reports Server (NTRS)

    Brugel, Edward W.; Bookbinder, Jay A.; Brown, Alexander

    1988-01-01

    High-dispersion IUE observations obtained to investigate the evolution of the shock structure of the Mira S Carinae (S Car) produced, despite very limited phase coverage, a set of five spectra of the Mg II h and k lines. There is significant emission from both the h and k lines at velocities of -150 km/sec relative to the stellar photosphere. The h-to-k ratio of the Mg II doublet remains below the theoretically predicated values of 2:1 to 1:1, and shows a smooth dependence on the optical phase. Archival studies of other Miras (e.g., R Car) indicate that S Car is not unique in possessing unusual and highly variable Mg II h and k line profiles.

  19. Effects of prescattering attenuation of spectropolarimetric line profiles

    NASA Technical Reports Server (NTRS)

    Wood, Kenneth; Bjorkman, J. E.

    1995-01-01

    We present the wavelength dependent linear polarization and position angle variations arising from single Thomson scattering of continuum stellar radiation in an axisymmetric, hot, planar disk, which is in bulk motion. The wavelength dependence arises through the combination of Doppler shifted line attenuation, prior to scattering, and the Doppler redistribution of the scattered radiation due to the bulk and thermal motions of the disk electrons. We find that when the scattering electrons are cold, there are large polarization and position angle variations across the resulting spectrapolarimetric absorption line profile-agreeing with previous investigations. However, when the thermal Doppler velocities of the scattering electrons are comparable to or greater than the electron bulk velocity (as is of ten the case), then the scattered line profile is broadened and the amplitude of the polarimetric variations are considerably reduced. The properties of the electron thermal smearing function are such that the equivalent width of any scattered spectrapolarimetric feature is independent on the electron temperature-a consequence of the conservation of areas under convolution. An important result of this is that for an axisymmetric circumstellar envelope the position angle variations will average to zero across any line formed through the above process. We expect that the effect of multiple line blending will yield a depolarization equivalent width is given by thesum of the individual equivalent widths and the position angle variations will average to zero. The implications of this are that the large depolarizations observed in the UV spectra of pi Aquarii, zeta Tauri and PP Carinae by the Wisconsin Ultraviolet Photo Polarimeter Experiment (WUPPE) can only be explained with prescattering attenuation of stellar flux if there are a sufficient number of multiple overlapping lines in that part of the spectrum.

  20. On the detection of heliospheric interface properties from interstellar/interplanetary Lyman-alpha profiles - Example of Baranov's two-shock model

    NASA Astrophysics Data System (ADS)

    Quemerais, E.; Malama, Iu. G.; Lallement, R.; Bertaux, J. L.

    Interstellar/interplanetary neutral H atoms which are observed towards the upwind (UW) and downwind (DW) directions do not originate from the same region of the heliospheric interface. If the neutral/plasma coupling is not negligible, the variations of the plasma properties with the distance to the stagnation line are imprinted in the neutral atoms and in the relationship between the UW and DW Lyman-alpha spectral profiles, whatever the distance to the heliospheric shock and to the heliopause. This effect is checked both on the Prognoz 5/6 backscattered Lyman-alpha data and in the case of the Baranov type interface. Hydrogen absorption cell data interpretation is much improved when inhomogeneities of the interstellar wind are taken into account. Lyman-alpha profiles derived from the Monte Carlo neutral flow model of Malama (1990) show the predicted macroscopic effects. These results tend to show that information on the type of the interface at the heliopause can be derived from precise Lyman-alpha line shape measurements and from comparison with line shapes computed from a homogeneous interstellar flow model.

  1. High-resolution measurements, line identification, and spectral modeling of K-alpha transitions in Fe XVIII-Fe XXV

    NASA Technical Reports Server (NTRS)

    Beiersdorfer, P.; Phillips, T.; Jacobs, V. L.; Hill, K. W.; Bitter, M.; Von Goeler, S.; Kahn, S. M.

    1993-01-01

    A detailed analysis of the iron K-alpha emission spectrum covering the wavelength region from 1.840 to 1.940 A is presented. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified, consisting of either single or multiple lines from eight charge states in iron, Fe XVIII - Fe XXV, and their wavelengths are determined with an accuracy of 0.1-0.4 mA. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with nonspectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2sr2ps configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K-alpha emission from the Sun.

  2. Measurement of the Relative Intensity of the Ly-(alpha) Lines in Fe 25+

    SciTech Connect

    Wong, K L; Beiersdorfer, P; Reed, K J; Osterheld, A L

    2002-06-18

    The intensity of the polarized Ly-{alpha}{sub 1} (2p{sub 3/2} {yields} 1s{sub 1/2}) transition has been measured relative to that of the unpolarized Ly-{alpha}{sub 2} (2p{sub 1/2} {yields} 1s{sub 1/2}) transition in Fe{sup 25+}. The measurements were made with the Livermore electron beam ion trap EBIT-II for beam energies from threshold to 2.5 times threshold. The results are compared to the corresponding intensity ratio predicted using excitation cross sections from distorted-wave calculations, which includes polarization, the M1(2s{sub 1/2} {yields} 1s{sub 1/2}) transition, and cascade contributions. Discrepancies are found that tend to confirm a recent report of a measurement of the Ly-{alpha} lines in Ti{sup 21+} performed on the Tokyo electron beam ion trap.

  3. The RNA polymerase II of an alpha-amanitin-resistant Chinese hamster ovary cell line.

    PubMed

    Lobban, P E; Siminovitch, L; Ingles, C J

    1976-05-01

    Amal, an alpha-amanitin-resistant mutant of the Chinese hamster ovary cell line, contains an RNA polymerase activity which elutes from DEAE-Sephadex at a salt concentration characteristic of an RNA polymerase II, but which is not sensitive to alpha-amanitin at levels where the polymerase II of wild-type cells is strongly inhibited. This result suggests that Amal owes its amanitin-resistant phenotype to a mutation affecting one of its genes for RNA polymerase II. To test this hypothesis, we purified the enzyme from Amal and then compared its properties with those of the wild-type enzyme. The mutant enzyme is indeed a polymerase II, and is over 600 times less sensitive to alpha-amanitin and more thermolabile than the wild-type enzyme. PMID:954093

  4. Line profile and continuum variability in the very broad-line Seyfert galaxy Mrk 926

    NASA Astrophysics Data System (ADS)

    Kollatschny, W.; Zetzl, M.

    2010-11-01

    Aims: We present results of an intensive spectroscopic variability campaign of the very broad-line Seyfert 1 galaxy Mrk 926. Our aim is to investigate the broad-line region (BLR) by studying the intensity and line profile variations of this galaxy on short timescales. Methods: High signal-to-noise ratio (S/N) spectra were taken with the 9.2 m Hobby-Eberly Telescope (HET) in identical conditions during two observing campaigns in 2004 and 2005. After the spectral reduction and internal calibration we achieved a relative flux accuracy of better than 1%. Results: The rms profiles of the very broad Balmer lines have shapes that differ from their mean line profiles, consisting of two inner (v ≲ ± 6000 km s-1) and two outer (v ≳ ± 6000 km s-1) line components in addition to a central component (v ≲ ± 600 km s-1). These outer and inner line segments varied with different amplitudes during our campaign. The radius of the BLR is very small with an upper limit of 2 light-days for the Hβ BLR size. We derived an upper limit to the central black hole mass of M = 11.2 × 107 M⊙. The 2-D cross-correlation functions CCF(τ, v) of Hβ and Hα are flat within the error limits. The response of the Balmer line segments with respect to continuum variations is different in the outer and inner wings of Hα and Hβ. This double structure in the response curves - of two separate inner and outer components - has also been seen in the rms line profiles. We conclude that the outer and inner line segments originate in different regions and/or under different physical conditions. Based on observations obtained with the Hobby-Eberly Telescope, which is a joint project of the University of Texas at Austin, the Pennsylvania State University, Stanford University, Ludwig-Maximilians-Universität München, and Georg-August-Universität Göttingen.

  5. Pressure effects on water vapour lines: beyond the Voigt profile.

    PubMed

    Ngo, N H; Tran, H; Gamache, R R; Hartmann, J M

    2012-06-13

    A short overview of recent results on the effects of pressure (collisions) regarding the shape of isolated infrared lines of water vapour is presented. The first part of this study considers the basic collisional quantities, which are the pressure-broadening and -shifting coefficients, central parameters of the Lorentzian (and Voigt) profile and thus of any sophisticated line-shape model. Through comparisons of measured values with semi-classical calculations, the influences of the molecular states (both rotational and vibrational) involved and of the temperature are analysed. This shows the relatively unusual behaviour of H(2)O broadening, with evidence of a significant vibrational dependence and the fact that the broadening coefficient (in cm(-1) atm(-1)) of some lines increases with temperature. In the second part of this study, line shapes beyond the Voigt model are considered, thus now taking 'velocity effects' into account. These include both the influence of collisionally induced velocity changes that lead to the so-called Dicke narrowing and the influence of the dependence of collisional parameters on the speed of the radiating molecule. Experimental evidence of deviations from the Voigt shape is presented and analysed. The interest of classical molecular dynamics simulations, to model velocity changes, together with semi-classical calculations of the speed-dependent collisional parameters for line-shape predictions from 'first principles', are discussed. PMID:22547229

  6. Comparative proteomic profiling of Hodgkin lymphoma cell lines.

    PubMed

    Vergara, D; Simeone, P; De Matteis, S; Carloni, S; Lanuti, P; Marchisio, M; Miscia, S; Rizzello, A; Napolitano, R; Agostinelli, C; Maffia, M

    2016-01-01

    Classical Hodgkin lymphoma (cHL) is a malignancy with complex pathogenesis. The hallmark of the disease is the presence of large mononucleated Hodgkin and bi- or multinucleated Reed/Sternberg (H/RS) cells. The origin of HRS cells in cHL is controversial as these cells show the coexpression of markers of several lineages. Using a proteomic approach, we compared the protein expression profile of cHL models of T- and B-cell derivation to find proteins differentially expressed in these cell lines. A total of 67 proteins were found differentially expressed between the two cell lines including metabolic proteins and proteins involved in the regulation of the cytoskeleton and/or cell migration, which were further validated by western blotting. Additionally, the expression of selected B- and T-cell antigens was also assessed by flow cytometry to reveal significant differences in the expression of different surface markers. Bioinformatics analysis was then applied to our dataset to find enriched pathways and networks, and to identify possible key regulators. In the present study, a proteomic approach was used to compare the protein expression profiles of two cHL cell lines. The identified proteins and/or networks, many of which not previously related to cHL, may be important to better define the pathogenesis of the disease, to identify novel diagnostic markers, and to design new therapeutic strategies. PMID:26588820

  7. DEVELOPMENT OF AN ON-LINE, REAL-TIME ALPHA RADIATION MEASURING INSTRUMENT FOR LIQUID STREAMS

    SciTech Connect

    Unknown

    1999-06-16

    Thermo Power Corporation has proven the technical viability of an on-line, real-time alpha radionuclide instrument for aqueous sample analysis through laboratory and initial field tests of the instrument. The instrument has been shown to be isotonically sensitive to extremely low (ten parts per trillion, or femto Curies per liter) levels of a broad range of radioisotopes. Performance enhancement and other scaling data obtained during the course of this investigation have shown that on-line, real-time operation is possible, with a sub 30-minute response time analyzing 20 ppb (30 pCi/1) natural uranium. Now that these initial field tests in Oak Ridge, Tennessee have been successfully completed, Thermo Power plans to conduct comprehensive field tests of the instrument. The purpose of these endurance tests will be to determine the endurance characteristics of the Thermo Alpha Monitor for Water when it is used by non-Thermo Power personnel in a series of one or more extended field tests. Such endurance testing is the vital next step towards the commercialization of the Alpha Monitor. Subsequently, it will be possible to provide the DOE with an instrument that has the capability of obtaining rapid feedback about the concentrations of alpha-emitting isotope contamination in effluent water streams (Subsurface Contaminants Focus Area). It will also be useful for process control of remediation and D and D operations such as monitoring scrubber/rinse water radioactivity levels (Mixed Waste, Plutonium and D and D Focus Areas).

  8. DEVELOPMENT OF AN ON-LINE, REAL-TIME ALPHA RADIATION MEASURING INSTRUMENT FOR LIQUID STREAMS

    SciTech Connect

    1996-11-22

    The Department of Energy (DOE) has expressed a need for an on-line, real-time instrument for assaying alpha-emitting radionuclides (uranium and the transuranics) in effluent waters leaving DOE sites to ensure compliance with regulatory limits. Due to the short range of alpha particles in water ({approximately}40 Tm), it is necessary now to intermittently collect samples of water and send them to a central laboratory for analysis. A lengthy and costly procedure is used to separate and measure the radionuclides from each sample. Large variations in radionuclide concentrations in the water may go undetected due to the sporadic sampling. Even when detected, the reading may not be representative of the actual stream concentration. To address these issues, Tecogen, a division of Thermo Power Corporation, a Thermo Electron company, is developing a real-time, field-deployable, alpha monitor based on a solid-state silicon wafer semiconductor (patent pending, to be assigned to the Department of Energy). The Thermo Alpha Monitor (TAM) will serve to monitor effluent water streams (Subsurface Contaminants Focus Area) and will be suitable for process control of remediation as well as decontamination and decommissioning operations, such as monitoring scrubber or rinse water radioactivity levels (Mixed Waste Focus Area and D&D Focus Area). It would be applicable for assaying other liquids, such as oil, or solids after proper preconditioning. Rapid isotopic alpha air monitoring is also possible using this technology. This instrument for direct counting of alpha-emitters in aqueous streams is presently being developed by Thermo Power under a development program funded by the DOE Environmental Management program (DOE-EM), administered by the Morgantown Energy Technology Center (METC). Under this contract, Thermo Power has demonstrated a solid-state, silicon-based semiconductor instrument, which uses a proprietary film-based collection system to quantitatively extract the

  9. Low-redshift Lyman-alpha absorption lines and the dark matter halos of disk galaxies

    NASA Technical Reports Server (NTRS)

    Maloney, Philip

    1992-01-01

    Ultraviolet observations of the low-redshift quasar 3C 273 using the Hubble Space Telescope have revealed many more Lyman-alpha absorption lines than would be expected from extrapolation of the absorption systems seen toward QSOs at z about 2. It is shown here that these absorption lines can plausibly be produced by gas at large radii in the disks of spiral and irregular galaxies; the gas is confined by the dark matter halos and ionized and heated by the extragalactic radiation field. This scenario does not require the extragalactic ionizing radiation field to decline as rapidly with decreasing z as the QSO emissivity. Observations of Ly-alpha absorption through the halos of known galaxies at low redshift will constrain both the extragalactic background and the properties of galactic halos.

  10. Intensifier silicon vidicon spectrophotometer for line profile studies in astronomy.

    PubMed

    Jeffers, S; Weller, W G

    1981-02-15

    The design and performance characteristics of a moderate dispersion spectrophotometer (Deltalambda ~ 0.1 nm) for astronomical observations are described. The spectrophotometer employs an intensifier silicon vidicon as detector. The operating characteristics of the detector have been evaluated and optimized. In astronomical use, the spectrupsilonophotometer is capable of recording line profiles of stars of m(upsilon) = 3.74 with a spectral resolution of 0.15 nm and SNR = 50 in an integration time of 10 sec when used with a 60-cm telescope. PMID:20309175

  11. Evaluation of the pharmacological selectivity profile of alpha 1 adrenoceptor antagonists at prostatic alpha 1 adrenoceptors: binding, functional and in vivo studies.

    PubMed Central

    Kenny, B. A.; Miller, A. M.; Williamson, I. J.; O'Connell, J.; Chalmers, D. H.; Naylor, A. M.

    1996-01-01

    1. The profile of a range of alpha 1 adrenoceptor antagonists was determined in vitro against cloned human alpha 1A, alpha 1B and alpha 1D adrenoceptors and against noradrenaline-mediated contractions of rat aorta and human prostate. The in vivo profile of compounds was determined in an anaesthetized dog model which allowed the simultaneous assessment of antagonist potency against phenylephrine-mediated increases in blood pressure and prostatic pressure. 2. The quinazoline antagonists, prazosin, doxazosin and alfuzosin displayed high affinity but were non selective for the three cloned human alpha 1 adrenoceptors. Indoramin and SNAP 1069 showed selectivity for alpha 1A and alpha 1B adrenoceptors relative to the alpha 1D subtype. Rec 15/2739, WB 4101, SL 89,0591, (+)- and (-)- tamsulosin showed selectivity for alpha 1A and alpha 1D adrenoceptors relative to the alpha 1B subtype. RS 17053 showed high affinity and selectivity for alpha 1A adrenoceptors (pKi 8.6) relative to alpha 1B (pKi = 7.3) and alpha 1D (pKi = 7.1) subtypes. 3. (+)-Tamsulosin, (-)-tamsulosin, SL 89,0591, Rec 15/2739, SNAP 1069 and RS 17053 appeared to act as competitive antagonists of noradrenaline-mediated contractions of rat aorta yielding pA2 affinity estimates which were similar to binding affinities at cloned human alpha 1D adrenoceptors. The following rank order was obtained: prazosin = (-)-tamsulosin > doxazosin > SL 89,0591 = (+)-tamsulosin > Rec 15/2739 > RS 17053 = SNAP 1069. 4. (-)-Tamsulosin was a very potent, insurmountable antagonist of noradrenaline-mediated contractions of human prostate, yielding an approximate pA2 estimate of 9.8 at 1 nM. The corresponding (+)-enantiomer was 30 fold weaker. SL 89,0591, SNAP 1069 and Rec 15/2739 yielded pA2 estimates which compared well with their alpha 1A binding affinities. The affinity estimate for prazosin on human prostate was lower than the corresponding binding affinity determined at alpha 1A adrenoceptors and RS 17053 was a very weak

  12. Detection and Characterisation of H-{alpha} Emission Lines from Gaia BP/RP Spectra

    SciTech Connect

    Jaenes, Juergen; Laur, Sven; Kolka, Indrek

    2008-12-05

    The Gaia probe, set to launch in 2011, will measure an estimated billion astronomical objects, producing an enormous amount of data. One of the data analysis tasks will be the identification and classification of measured objects. A vast majority of them will be 'ordinary' stars from our Galaxy but a certain percentage will belong to 'peculiar' objects. We are interested in detecting emission line stars (ELS). The characteristic feature of most ELS is the presence of a H-{alpha} emission line in their spectra. In the case of Gaia measurements, the influence of this line could be detected in low resolution prismatic spectra which will be recorded both in blue (BP) and red (RP) spectral region. In this work, we compare different algorithms for detecting and characterising H-{alpha} lines in Gaia spectra. These include a simple, integrated flux ratio-based algorithm and several machine learning algorithms, such as neural networks, support vector machines and support vector regression. We study line detection both from single-transit and over-sampled end-of-mission data.

  13. Gene expression profile of human lymphocytes exposed to (211)At alpha particles.

    PubMed

    Turtoi, A; Brown, I; Schläger, M; Schneeweiss, F H A

    2010-08-01

    In this study, the Whole Human Genome 44K DNA microarray assay was used for the first time to obtain gene expression profiles in human peripheral blood lymphocytes 2 h after exposure (in suspension) to 6.78 MeV mean energy alpha particles from extracellular (211)At. Lymphocytes were exposed to fluences of 0.3-9.6 x 10(6) alpha particles/cm(2) [corresponding to mean absorbed alpha-particle doses (D(alpha)) of 0.05-1.60 Gy] over 30 min. Significantly modulated expression was identified in 338 early-response genes. Up-regulated expression was evident in 183 early-response genes, while the remaining 155 were down-regulated. Over half of the up-regulated genes and 40% of the down-regulated genes had a known biological process related primarily to cell growth and maintenance and cell communication. Genes associated with cell death were found only in the up-regulated genes and those with development only in the down-regulated genes. Eight selected early-response genes that displayed a sustained up- or down-regulation (CD36, HSPA2, MS4A6A, NFIL3, IL1F9, IRX5, RASL11B and SULT1B1) were further validated in alpha-particle-irradiated lymphocytes of two human individuals using the TaqMan(R) RT-qPCR technique. The results confirmed the observed microarray gene expression patterns. The expression modulation profiles of IL1F9, IRX5, RASL11B and SULT1B1 genes demonstrated similar trends in the two individuals studied. However, no significant linear correlation between increasing relative gene expression and the alpha-particle dose was evident. The results suggest the possibility that a panel of genes that react to alpha-particle radiation does exist and that they merit further study in a greater number of individuals to determine their possible value regarding alpha-particle biodosimetry. PMID:20681779

  14. Metal line blanketing and opacity in the ultraviolet of alpha 2 Canum Venaticorum

    NASA Technical Reports Server (NTRS)

    Molnar, M. R.

    1972-01-01

    Ultraviolet photometry by OAO-2 was made of alpha 2 CVn covering the entire 5.5d period of this magnetic Ap variable. The light curves ranging from 1330 A to 3320 A indicate the dominant role of rare-earth line-blanketing in redistributing flux. In a broad depression of the continuum covering 2300-2600 A, scanner observations possibly identify strong lines of Eu III as major contributors to this feature. At maximum intensity of the rare-earth lines, the ultraviolet continuum shortward of 2900 A is greatly diminished while the longer wavelength regions into the visual become brighter. In addition, there is evidence that the hydrogen line opacity is variable and the photoionization edge of Si I at 1680 A is identified.

  15. Line profiles and the kinematics of the narrow-line region in Seyfert galaxies

    NASA Technical Reports Server (NTRS)

    De Robertis, M. M.; Shaw, Richard A.

    1990-01-01

    High signal-to-noise ratio and long-slit CCD spectra at about 100 km/sec resolution have been obtained for six high-ionization Seyfert galaxies. By subtracting the stellar absorption features with the aid of continuum templates, and using deblending techniques, the asymmetry indices of a number of optical emission-line profiles were measured, spanning a wide range in both ionization potential and critical density in each galaxy. The fundamental problem of the cloud-motion direction in the narrow-line region (NLR) has been studied, using these measurements and on the assumption that the preponderance of blueward profile asymmetries requires radial motion as well as a source of extinction. Simple and spherically symmetric NLR simulations are performed to demonstrate that infall and outflow models can be distinguished by comparing asymmetry indices as a function of ionization potential and critical density.

  16. Hepatic drug metabolizing profile of Flinders Sensitive Line rat model of depression.

    PubMed

    Kotsovolou, Olga; Ingelman-Sundberg, Magnus; Lang, Matti A; Marselos, Marios; Overstreet, David H; Papadopoulou-Daifoti, Zoi; Johanson, Inger; Fotopoulos, Andrew; Konstandi, Maria

    2010-08-16

    The Flinders Sensitive Line (FSL) rat model of depression exhibits some behavioral, neurochemical, and pharmacological features that have been reported in depressed patients and has been very effective in screening antidepressants. Major factor that determines the effectiveness and toxicity of a drug is the drug metabolizing capacity of the liver. Therefore, in order to discriminate possible differentiation in the hepatic drug metabolism between FSL rats and Sprague-Dawley (SD) controls, their hepatic metabolic profile was investigated in this study. The data showed decreased glutathione (GSH) content and glutathione S-transferase (GST) activity and lower expression of certain major CYP enzymes, including the CYP2B1, CYP2C11 and CYP2D1 in FSL rats compared to SD controls. In contrast, p-nitrophenol hydroxylase (PNP), 7-ethoxyresorufin-O-dealkylase (EROD) and 16alpha-testosterone hydroxylase activities were higher in FSL rats. Interestingly, the wide spread environmental pollutant benzo(alpha)pyrene (B(alpha)P) induced CYP1A1, CYP1A2, CYP2B1/2 and ALDH3c at a lesser extend in FSL than in SD rats, whereas the antidepressant mirtazapine (MIRT) up-regulated CYP1A1/2, CYP2C11, CYP2D1, CYP2E1 and CYP3A1/2, mainly, in FSL rats. The drug also further increased ALDH3c whereas suppressed GSH content in B(alpha)P-exposed FSL rats. In conclusion, several key enzymes of the hepatic biotransformation machinery are differentially expressed in FSL than in SD rats, a condition that may influence the outcome of drug therapy. The MIRT-induced up-regulation of several drug-metabolizing enzymes indicates the critical role of antidepressant treatment that should be always taken into account in the designing of treatment and interpretation of insufficient pharmacotherapy or drug toxicity. PMID:20595028

  17. Selective production of interferon-alpha subtypes by cultured peripheral blood mononuclear cells and lymphoblastoid cell lines.

    PubMed Central

    Greenway, A L; Overall, M L; Sattayasai, N; Rowley, M J; Hertzog, P J; McMullen, G L; Cheetham, B F; Marzuki, S

    1992-01-01

    The biological significance of the existence of multiple interferon-alpha (IFN-alpha) subtypes is unknown but may represent a finely tuned mechanism whereby different subtypes are produced in response to different stimuli. To investigate the expression of individual IFN-alpha subtypes, polyclonal antipeptide antisera designed to react with all IFN-alpha subtypes, or with a particular subtype, IFN-alpha 2 or IFN-alpha 4, have been produced. In this study we demonstrate the utility of these antisera for the detection, using indirect immunofluorescence staining, of intracellular IFN-alpha produced by human peripheral blood mononuclear cells (PBMC) and lymphoblastoid cells. Secreted IFN-alpha was also investigated by bioassay and a sandwich radioimmunoassay (RIA), using two monoclonal antibodies (mAb) and specific for IFN-alpha 4. The PBMC were shown to produce IFN reactive with all three polyclonal antisera, after stimulation with Sendai virus. The lymphoblastoid cells also produced IFN, including IFN-alpha 2, but IFN-alpha 4 was not detected either intracellularly, by immunofluorescence, or in the medium, by sandwich RIA. The immunofluorescence studies also demonstrate that in the absence of viral stimulation IFN-alpha is found in the cytoplasm of PBMC and lymphoblastoid cells but not secreted in detectable levels. The finding that two lymphoblastoid cell lines do not produce the subtype IFN-alpha 4 raises important questions as to whether other cell lines and cell types produce IFN-alpha subtypes selectively, and whether individual IFN-alpha subtypes have different roles in human physiology and pathology. Images Figure 1 Figure 2 Figure 3 PMID:1537595

  18. Dual Fano and Lorentzian line profile properties of autoionizing states

    NASA Astrophysics Data System (ADS)

    Tu, B.; Xiao, J.; Yao, K.; Shen, Y.; Yang, Y.; Lu, D.; Li, W. X.; Qiu, M. L.; Wang, X.; Chen, C. Y.; Fu, Y.; Wei, B.; Zheng, C.; Huang, L. Y.; Zhang, B. H.; Tang, Y. J.; Hutton, R.; Zou, Y.

    2015-06-01

    Photon absorption spectroscopy is a powerful tool for uncovering the structure of atoms, molecules, and solids. Symmetric Lorentzian and asymmetric Fano line shapes are fundamental spectroscopic signatures related to the structural and dynamical properties. Recently, Ott et al. [Science 340, 716 (2013), 10.1126/science.1234407] successfully transferred Fano profile into Lorentzian line shape using an intense infrared laser, after excitation of autoionizing states in helium by attosecond XUV pulse. This is a very important step forward in quantum phase control. However, here we show experimentally that an autoionizing state can have both Fano and Lorentzian behavior naturally, depending on the process involved. This study utilized the inverse process of photon absorption ionization, i.e., electron ion recombination with photon emission, making sure the resonant autoionizing state is not modified or decorated by the laser fields. Our result implies that excitation of the state through different paths—for example, one photon versus multiphoton excitation, or even one step versus multistep excitation—can lead to different Fano profiles for the same resonant state. We also report an experimental determination of the energy shifts in the recombination photon-intensity peaks due to the interference between the resonant and nonresonant processes.

  19. HST/COS SPECTRA OF DF Tau AND V4046 Sgr: FIRST DETECTION OF MOLECULAR HYDROGEN ABSORPTION AGAINST THE Ly{alpha} EMISSION LINE

    SciTech Connect

    Yang Hao; Linsky, Jeffrey L.; France, Kevin E-mail: jlinsky@jilau1.colorado.edu

    2011-03-20

    We report the first detection of molecular hydrogen (H{sub 2}) absorption in the Ly{alpha} emission line profiles of two classical T Tauri stars (CTTSs), DF Tau and V4046 Sgr, observed by the Hubble Space Telescope/Cosmic Origins Spectrograph. This absorption is the energy source for many of the Lyman-band H{sub 2} fluorescent lines commonly seen in the far-ultraviolet spectra of CTTSs. We find that the absorbed energy in the H{sub 2} pumping transitions from a portion of the Ly{alpha} line significantly differ from the amount of energy in the resulting fluorescent emission. By assuming additional absorption in the H I Ly{alpha} profile along our light of sight, we can correct the H{sub 2} absorption/emission ratios so that they are close to unity. The required H I absorption for DF Tau is at a velocity close to the radial velocity of the star, consistent with H I absorption in the edge-on disk and interstellar medium. For V4046 Sgr, a nearly face-on system, the required absorption is between +100 km s{sup -1} and +290 km s{sup -1}, most likely resulting from H I gas in the accretion columns falling onto the star.

  20. Conversion efficiency and spectral broadening of the K-{alpha} line emitted from planar titanium targets irradiated with ultra-short laser pulses of high intensity

    SciTech Connect

    Arora, V.; Singhal, H.; Naik, P. A.; Gupta, P. D.

    2011-10-15

    A study of the conversion efficiency and line shape of the K-{alpha} x-ray line radiation from a planar titanium target irradiated by an ultra-short laser pulse is performed. The conversion efficiency and spectral broadening are studied as a function of laser intensity (5 x 10{sup 16}-10{sup 18} W cm{sup -2}), laser pulse duration (45 fs-800 fs), and laser fluence (2 x 10{sup 3}-4.2 x 10{sup 4} J cm{sup -2}). The K-{alpha}{sub 1} line (4510 eV) is observed to be broadened (up to {approx}9 eV), predominantly towards the higher energy side and strongly depends on the laser fluence rather than on laser intensity. The reason for the spectral broadening is attributed to K-{alpha} emission in warm dense plasma. The role of hot electrons and direct laser heating on spectral broadening is outlined. In addition to this, our observations indicates that the presence of pre-plasma strongly contribute to the observed broadening through the inner-shell transitions in multiply charged titanium ions in the pre-plasma. The appropriate laser irradiation parameters to achieve high conversion efficiency and minimum spectral width of the K-{alpha} radiation are identified. The study is important, since the control of the spectral profile is of general interest for diffraction or scattering experiments in view of its potential in increasing temporal resolution.

  1. SHORT TIMESCALE VARIATIONS OF THE H{alpha} DOUBLE-PEAKED PROFILE OF THE NUCLEUS OF NGC 1097

    SciTech Connect

    Schimoia, Jaderson S.; Storchi-Bergmann, Thaisa; Nemmen, Rodrigo S.; Winge, Claudia

    2012-04-01

    The broad (FWHM {approx} 10,000 km s{sup -1}) double-peaked H{alpha} profile from the LINER/Seyfert 1 nucleus of NGC 1097 was discovered in 1991 and monitored for the following 11 years. The profile showed variations attributed to the rotation of gas in a non-axisymmetric Keplerian accretion disk, ionized by a varying radiatively inefficient accretion flow (RIAF) located in the inner parts of the disk. We present and model 11 new spectroscopic observations of the double-peaked profile taken between 2010 March and 2011 March. This series of observations was motivated by the finding that in 2010 March the flux in the double-peaked line was again strong, indeed, in 2010 December, even stronger than in the observations of a decade ago. We also discovered shorter timescale variations than in the previous observations: (1) the first, of {approx}7 days, is interpreted as due to 'reverberation' of the variation of the ionizing source luminosity, and the timescale of 7 days as the light crossing time between the source and the accretion disk; this new timescale and its interpretation provides a distance between the emitting gas and the supermassive black hole and as such introduces a new constraint on its mass; (2) the second, of Almost-Equal-To 5 months, was attributed to the rotation of a spiral arm in the disk, which was found to occur on the dynamical timescale. We use two accretion disk models to fit theoretical profiles to the new data, both having non-axisymmetric emissivities produced by the presence of an one-armed spiral. Our modeling constrains the rotation period for the spiral to be Almost-Equal-To 18 months. This work supports our previous conclusion that the broad double-peaked Balmer emission lines in NGC 1097-and probably also in other low-luminosity active nuclei-originate from an accretion disk ionized by a central RIAF.

  2. Mg II line profiles of the Mira S Carinae

    SciTech Connect

    Bookbinder, J.A.; Brown, A.; Brugel, E.W.; Colorado Univ., Boulder )

    1989-07-01

    A series of high-dispersion IUE observations obtained to investigate the evolution of the shock structure of the Mira variable S Carinae have produced (despite limited phase coverage) a set of five exceptionally interesting spectra of the Mg II h and k lines. The two primary findings of these observations are (1) there is significant emission from both the h and k lines at positions corresponding to velocities of -150 km/s relative to the stellar photosphere and (2) the k/h flux ratio of the Mg II doublet remains below the theoretically predicted values which lie in the range 2:1 to 1:1 and shows a smooth dependence on the optical phase. Archival studies of other Miras (e.g., R Car) indicate that S Car is not unique in possessing unusual and highly variable Mg II h and k line profiles. Several possible physical processes that may explain these results, including radiative transfer effects in a shocked atmosphere, circumstellar scattering, and circumstellar absorption, are discussed. 10 refs.

  3. Mg II line profiles of the Mira S Carinae

    NASA Technical Reports Server (NTRS)

    Bookbinder, Jay A.; Brown, Alexander; Brugel, Edward W.

    1989-01-01

    A series of high-dispersion IUE observations obtained to investigate the evolution of the shock structure of the Mira variable S Carinae have produced (despite limited phase coverage) a set of five exceptionally interesting spectra of the Mg II h and k lines. The two primary findings of these observations are (1) there is significant emission from both the h and k lines at positions corresponding to velocities of -150 km/s relative to the stellar photosphere and (2) the k/h flux ratio of the Mg II doublet remains below the theoretically predicted values which lie in the range 2:1 to 1:1 and shows a smooth dependence on the optical phase. Archival studies of other Miras (e.g., R Car) indicate that S Car is not unique in possessing unusual and highly variable Mg II h and k line profiles. Several possible physical processes that may explain these results, including radiative transfer effects in a shocked atmosphere, circumstellar scattering, and circumstellar absorption, are discussed.

  4. Fast variations in the ultraviolet resonance lines of Alpha Camelopardalis (O9.5 Ia) - Evidence for blobs in the wind

    NASA Technical Reports Server (NTRS)

    Lamers, Henry J. G. L. M.; Snow, Theodore P.; De Jager, Cornelis; Langerwerf, A.

    1988-01-01

    The 72 IUE spectra of Alpha Cam and 19 IUE spectra of Kappa Cas, obtained during 72 hours of continuous IUE time in September 1978 were searched for variations in the profiles of the resonance lines of Si IV, C IV, and N V, and the results are discussed. The UV resonance lines in the spectra of Alpha Cam showed variations at the 2 percent level near -1800, -700, and +700 km/s. The first two variations can be explained by absorption components of outward-accelerated blobs or shells with an average acceleration of 1.5 cm/sq s. The characteristics of the blobs and shells are discussed, including the column densities and masses. No variations were found in the spectra of Kappa Cas.

  5. DEVELOPMENT OF AN ON-LINE, REAL-TIME ALPHA RADIATION MEASURING INSTRUMENT FOR LIQUID STREAMS

    SciTech Connect

    Unknown

    1999-03-14

    The US Department of Energy (DOE) has expressed a need for an on-line, real-time instrument for assaying alpha-emitting radionuclides (uranium and the transuranics) in effluent waters leaving DOE sites to ensure compliance with regulatory limits. Due to the short range of alpha particles in water ({approximately}40 Im), it is necessary now to intermittently collect samples of water and send them to a central laboratory for analysis. A lengthy and costly procedure is used to separate and measure the radionuclides from each sample. Large variations in radionuclide concentrations in the water may go undetected due to the sporadic sampling. Even when detected, the reading may not be representative of the actual stream concentration. To address these issues, the Advanced Technologies Group of Thermo Power Corporation (a Thermo Electron company) is developing a real-time, field-deployable alpha monitor based on a solid-state silicon wafer semiconductor (US Patent 5,652,013 and pending, assigned to the US Department of Energy). The Thermo Water Alpha Monitor will serve to monitor effluent water streams (Subsurface Contaminants Focus Area) and will be suitable for process control of remediation as well as decontamination and decommissioning (D and D) operations, such as monitoring scrubber or rinse water radioactivity levels (Mixed Waste, Plutonium, and D and D Focus Area). It would be applicable for assaying other liquids, such as oil, or solids after proper preconditioning. Rapid isotopic alpha air monitoring is also possible using this technology. This report details the program's accomplishments to date. Most significantly, the Alpha Monitoring Instrument was successfully field demonstrated on water 100X below the Environmental Protection Agency's proposed safe drinking water limit--down to under 1 pCi/1. During the Field Test, the Alpha Monitoring Instrument successfully analyzed isotopic uranium levels on a total of five different surface water, process water, and

  6. Lipids and lipoprotein profile in doxorubicin treated rats: influence of alpha-tocopherol administration.

    PubMed

    Geetha, A; Catherine, J; Sankar, R; Devi, C S

    1990-11-01

    The effect of doxorubicin (DXR) on the levels of heart, liver and plasma lipids and plasma lipoproteins were studied in rats. Rats were treated with DXR (2.5 mg/kg body weight weekly for 8 weeks, iv) with or without alpha-tocopherol (alpha-TPL) (400 mg/kg body wt daily for 60 days) co-administration. DXR treated rats showed increase in plasma total cholesterol, triglycerides and phospholipids. The activities of lecithin cholesterol-acyl transferase and hepatic and extrahepatic lipoprotein lipase were lowered significantly with concomitant increase in liver and heart lipid peroxide levels in DXR treatment. HDL cholesterol level was found to be decreased significantly in DXR treated rats as a result of which there was an increase of LDLc/HDLc ratio. alpha-TPL coadministration brought back the enzyme activity to near normal and reduced the level of lipid peroxides. The lipid changes were minimum in rats treated with both alpha-TPL and DXR. This study suggests that the toxicity of DXR is reflected in lipids and lipoprotein profile. PMID:2283173

  7. Line Profile Measurements of the Lunar Exospheric Sodium

    NASA Technical Reports Server (NTRS)

    Oliversen, Ronald J.; Mierkiewicz, Edwin J.; Line, Michael R.; Roesler, Fred L.; Lupie, Olivia L.

    2012-01-01

    We report ongoing results of a program to measure the lunar sodium exospheric line profile from near the lunar limb out to two lunar radii (approx 3500 km). These observations are conducted from the National Solar Observatory McMath-Pierce telescope using a dual-etalon Fabry-Perot spectrometer with a resolving power of 180,600 (1.7 km/s) to measure line widths and velocity shifts of the Na D2 (5889 950 A) emission line in equatorial and polar regions at different lunar phases. The typical field of view (FOV) is 3 arcmin (approx 360 km) with an occasional smaller 1 arcmin FOV used right at the limb edge. The first data were obtained from full Moon to 3 days following full Moon (waning phase) in March 2009 as part of a demonstration run aimed at establishing techniques for a thorough study of temperatures and velocity variations in the lunar sodium exosphere. These data indicate velocity displacements from different locations off the lunar limb range between 150 and 600 m/s from the lunar rest velocity with a precision of +/- 20 to +/- 50 m/s depending on brightness. The measured Doppler line widths for observations within 10.5 arcmin of the east and south lunar limbs for observations between 5 deg and 40 deg lunar phase imply temperatures ranging decreasing from 3250 +/- 260K to 1175 +/- 150K. Additional data is now being collected on a quarterly basis since March 2011 and preliminary results will be reported.

  8. Transcription profiles of non-immortalized breast cancer cell lines

    PubMed Central

    Fernandez-Cobo, Mariana; Holland, James F; Pogo, Beatriz GT

    2006-01-01

    Background Searches for differentially expressed genes in tumours have made extensive use of array technology. Most samples have been obtained from tumour biopsies or from established tumour-derived cell lines. Here we compare cultures of non-immortalized breast cancer cells, normal non-immortalized breast cells and immortalized normal and breast cancer cells to identify which elements of a defined set of well-known cancer-related genes are differentially expressed. Methods Cultures of cells from pleural effusions or ascitic fluids from breast cancer patients (MSSMs) were used in addition to commercially-available normal breast epithelial cells (HMECs), established breast cancer cell lines (T-est) and established normal breast cells (N-est). The Atlas Human Cancer 1.2 cDNA expression array was employed. The data obtained were analysed using widely-available statistical and clustering software and further validated through real-time PCR. Results According to Significance Analysis of Microarray (SAM) and AtlasImage software, 48 genes differed at least 2-fold in adjusted intensities between HMECs and MSSMs (p < 0.01). Some of these genes have already been directly linked with breast cancer, metastasis and malignant progression, whilst others encode receptors linked to signal transduction pathways or are otherwise related to cell proliferation. Fifty genes showed at least a 2.5-fold difference between MSSMs and T-est cells according to AtlasImage, 2-fold according to SAM. Most of these classified as genes related to metabolism and cell communication. Conclusion The expression profiles of 1176 genes were determined in finite life-span cultures of metastatic breast cancer cells and of normal breast cells. Significant differences were detected between the finite life-span breast cancer cell cultures and the established breast cancer cell lines. These data suggest caution in extrapolating information from established lines for application to clinical cancer research. PMID

  9. Ultraviolet and Optical Line Profile Variations in the Spectrum of {epsilon} Persei

    SciTech Connect

    Gies, D. R.; Kambe, E.; Josephs, T. S.; Bagnuolo, W. G. Jr.; Choi, Y. J.; Gudehus, D.; Guyton, K. M.; Hartkopf, W. I.; Hildebrand, J. L.; Kaye, A. B.

    1999-11-01

    The rapid variable star, {epsilon} Per (B0.5 IV-III), displays the largest amplitude profile fluctuations known among the growing number of massive, spectrum-variable stars. Here we present an analysis of a continuous 5 day run of IUE UV spectroscopy, and we show for the first time that the systematic, blue-to-red moving patterns observed in high-quality optical spectra are also present in the UV photospheric lines. We present cross-correlation functions of the individual spectra with that of a narrow-lined standard that produce a high signal-to-noise ratio representation of the blue-to-red moving bump patterns found in individual lines. We then use time series analysis methods to determine the periodic components of the profile variations (after reregistering the spectra to correct for binary motion). There are at least six periods present (ranging from 8.46 to 2.27 hr), and most of these signals are also found in optical line variations observed in 1986 (although the relative amplitudes have changed significantly). Furthermore, analysis of a shorter time series of IUE spectra from 1984 shows that similar periods were present then. We also present H{alpha} and He i {lambda}6678 profiles obtained with the Georgia State University Multi-Telescope Telescope, which were made simultaneously with IUE, and we show that the profile variations are essentially identical in the UV and optical ranges. We rule out rotational modulation and circumstellar gas obscuration as possible causes, and we suggest instead that the variations are the result of photospheric nonradial pulsations of relatively low degree (l=3-5). There were significant changes ({approx}10%) in the equivalent widths of the UV stellar wind lines during the IUE run, and we suggest that wind strengthening events are related to episodes of large-amplitude, constructive interference between the NRP modes. Thus, intermode beating may play an important role in promoting wind loss from massive stars. (c) (c) 1999

  10. Line profile variability in the massive binary HD 152219

    NASA Astrophysics Data System (ADS)

    Sana, H.; Gosset, E.

    2009-07-01

    HD 152219 is a massive binary system with O9.5 III and B1-2 III/V components and a short orbital period of 4.2 d. In a previous work, we showed that the primary star (M_{prim}˜21 M_⊙) was presenting clear line profile variabilities (LPVs) that might be caused by nonradial pulsations (NRPs). In the present work, we report on an intensive spectroscopic monitoring, that aimed at unveiling the nature of the detected LPVs. Based on this new data set, we discard the NRPs and point out the Rossiter-McLaughlin effect as % being the cause of the observed LPVs. The upper limit derived on the amplitude of undetected NRPs, if any, is set at a couple of part per thousands of the continuum level.

  11. On the atomic line profiles in high pressure plasmas

    SciTech Connect

    Janssen, J. F. J.; Gnybida, M.; Rijke, A. J.; Dijk, J. van; Suijker, J. L. G.

    2013-11-14

    In a previous contribution to this journal [H. P. Stormberg, J. Appl. Phys. 51(4), 1963 (1980)], Stormberg presented an analytical expression for the convolution of Lorentz and Levy line profiles, which models atomic radiative transitions in high pressure plasmas. Unfortunately, the derivations are flawed with errors and the final expression, while correct, is accompanied by misguiding comments about the meaning of the symbols used therein, in particular the “complex error function.” In this paper, we discuss the broadening mechanisms that give rise to Stormberg's model and present a correct derivation of his final result. We will also provide an alternative expression, based on the Faddeeva function, which has decisive computational advantages and emphasizes the real-valuedness of the result. The MATLAB/Octave scripts of our implementation have been made available on the publisher's website for future reference.

  12. On the atomic line profiles in high pressure plasmas

    NASA Astrophysics Data System (ADS)

    Janssen, J. F. J.; Gnybida, M.; Suijker, J. L. G.; Rijke, A. J.; van Dijk, J.

    2013-11-01

    In a previous contribution to this journal [H. P. Stormberg, J. Appl. Phys. 51(4), 1963 (1980)], Stormberg presented an analytical expression for the convolution of Lorentz and Levy line profiles, which models atomic radiative transitions in high pressure plasmas. Unfortunately, the derivations are flawed with errors and the final expression, while correct, is accompanied by misguiding comments about the meaning of the symbols used therein, in particular the "complex error function." In this paper, we discuss the broadening mechanisms that give rise to Stormberg's model and present a correct derivation of his final result. We will also provide an alternative expression, based on the Faddeeva function, which has decisive computational advantages and emphasizes the real-valuedness of the result. The MATLAB/Octave scripts of our implementation have been made available on the publisher's website for future reference.

  13. MicroRNA profiles in various hepatocellular carcinoma cell lines

    PubMed Central

    Morishita, Asahiro; Iwama, Hisakazu; Fujihara, Shintaro; Sakamoto, Teppei; Fujita, Koji; Tani, Joji; Miyoshi, Hisaaki; Yoneyama, Hirohito; Himoto, Takashi; Masaki, Tsutomu

    2016-01-01

    Hepatocellular carcinoma (HCC) is one of the most common causes of cancer-associated mortality worldwide. Although surgery is considered the most effective treatment for patients with HCC, its indication is restricted by limited criteria and a high relapse rate following surgery; therefore, systemic chemotherapy is required for patients with advanced-stage HCC to prolong their survival. MicroRNAs (miRNAs) are endogenous non-coding RNAs of 18–22 nucleotides in length. It has been reported that aberrant expression of miRNAs is a feature shared by various types of human cancer. Previous studies have indicated that the modulation of non-coding RNAs, particularly miRNAs, may be a valuable therapeutic target for HCC. The aim of the present study was to elucidate the miRNA profiles associated with differentiation and hepatitis B virus (HBV) infection observed in HCC cell lines. The human Alex, Hep3B, HepG2, HuH1, HuH7, JHH1, JHH2, JHH5, JHH6, HLE, HLF and Li-7 HCC cell lines were used for an miRNA array. Replicate data were analyzed following their classification into: i) Poorly- and well-differentiated human HCC cells and ii) HBV-positive and -negative human HCC cells. Out of the 1,719 miRNAs, 4 were found to be significantly upregulated and 52 significantly downregulated in the poorly-differentiated cells, as compared with the well-differentiated cells. Conversely, in the HBV-positive cells 125 miRNAs were found to be upregulated and 2 downregulated, as compared with the HBV-negative cells. Unsupervised hierarchical clustering analysis with Pearson's correlation revealed that the miRNA expression levels were clustered both together and separately in each group. In conclusion, miRNA profile characterization based on various parameters may be a novel approach to determine the etiology of HCC.

  14. THE DIFFERENCE IN NARROW Fe K{alpha} LINE EMISSION BETWEEN SEYFERT 1 AND SEYFERT 2 GALAXIES

    SciTech Connect

    Liu Teng; Wang Junxian E-mail: jxw@ustc.edu.c

    2010-12-20

    We compile a sample of 89 Seyfert galaxies with both [O IV] 25.89 {mu}m line luminosities observed by Spitzer IRS and X-ray spectra observed by XMM-Newton EPIC. Using [O IV] emission as a proxy for active galactic nucleus (AGN) intrinsic luminosity, we find that although type 2 AGNs have higher line equivalent widths, the narrow Fe K{alpha} lines in Compton-thin and Compton-thick Seyfert 2 galaxies are 2.9{sup +0.8}{sub -0.6} and 5.6{sup +1.9}{sub -1.4} times weaker in terms of luminosity than Seyfert 1 galaxies, respectively. This indicates that different correction factors need to be applied for various types of AGNs before the narrow Fe K{alpha} line luminosity could serve as an intrinsic AGN luminosity indicator. We also find that Seyfert 1 galaxies in our sample have on average marginally larger line widths and higher line centroid energies, suggesting contamination from highly ionized Fe line or broader line emission from much smaller radius, but this effect is too weak to explain the large difference in narrow Fe K{alpha} line luminosity between type 1 and type 2 AGNs. This is the first observational evidence showing that the narrow Fe K{alpha} line emission in AGNs is anisotropic. The observed difference is consistent with theoretical calculations assuming a smoothly distributed obscuring torus and could provide independent constraints on the clumpiness of the torus.

  15. High-resolution measurements, line identification, and spectral modeling of K{alpha} transitions in Fe XVIII-XXV

    SciTech Connect

    Beiersdorfer, P.; Phillips, T.; Jacobs, V.L.; Hill, K.W.; Bitter, M.; von Goeler, S.; Kahn, S.M.

    1992-11-01

    The iron K{alpha} emission spectrum covering the wavelength region from 1.840 to 1.940 {Angstrom} is analyzed. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified consisting of either single or multiple lines from eight charge states in iron, Fe XVIII through Fe XXV, and their wavelengths are determined with an accuracy of 0.1--0.4 m{Angstrom}. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with non-spectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2s{sup r}2p{sup s} configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K{alpha} emission from the Sun. While many similarities are found, a few differences arise from the somewhat higher electron density in tokamak plasmas (10{sup 13} cm{sup {minus}3}), which affects the fine-structure level populations of the ground states of the initial ion undergoing electron-impact excitation or dielectronic recombination. We also find that several spectral features are comprised of different transitions from those reported in earlier analyses of solar data.

  16. High-resolution measurements, line identification, and spectral modeling of K[alpha] transitions in Fe XVIII-XXV

    SciTech Connect

    Beiersdorfer, P.; Phillips, T. ); Jacobs, V.L. . Condensed Matter and Radiation Sciences Div.); Hill, K.W.; Bitter, M.; von Goeler, S. . Plasma Physics Lab.); Kahn, S.M. )

    1992-11-01

    The iron K[alpha] emission spectrum covering the wavelength region from 1.840 to 1.940 [Angstrom] is analyzed. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified consisting of either single or multiple lines from eight charge states in iron, Fe XVIII through Fe XXV, and their wavelengths are determined with an accuracy of 0.1--0.4 m[Angstrom]. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with non-spectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2s[sup r]2p[sup s] configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K[alpha] emission from the Sun. While many similarities are found, a few differences arise from the somewhat higher electron density in tokamak plasmas (10[sup 13] cm[sup [minus]3]), which affects the fine-structure level populations of the ground states of the initial ion undergoing electron-impact excitation or dielectronic recombination. We also find that several spectral features are comprised of different transitions from those reported in earlier analyses of solar data.

  17. Isolation and characterisation of Kasumi-1 human myeloid leukaemia cell line resistant to tumour necrosis factor alpha-induced apoptosis.

    PubMed Central

    Ido, M.; Hayashi, K.; Kato, S.; Ogawa, H.; Komada, Y.; Zhau, Y. W.; Zhang, X. L.; Sakurai, M.; Suzuki, K.

    1996-01-01

    Tumour necrosis factor (TNF)-alpha induces apoptosis in a human acute myeloid leukaemia cell line, Kasumi-1. To examine the role of protein phosphorylation in signal transduction of TNF-alpha-induced apoptosis, a variant cell line resistant to TNF-alpha was established by an intermittent challenge of Kasumi-1 cells with increasing concentrations of TNF-alpha for 6 months. The mechanism of resistance to TNF-alpha appears to be in the post-receptor pathway because expression of p55 TNF receptor in the variant cells is increased compared with that of the parental Kasumi-1 cells. In renaturation assays, TNF-alpha induced a rapid activation of different protein kinases of different molecular weights, including the 50 kDa protein kinase (PK50) followed by the 35 kDa protein kinase (PK35), in the parental Kasumi-1 cells. The dose-response of TNF-alpha required to activate PK50 and PK35 was closely related to concentrations of TNF-alpha that induced apoptosis. Treatment of Kasumi-1 cells with ceramide also activated PK35. In TNF-resistant variant cells, activation of PK35 in response to TNF-alpha or ceramide was practically nil. These findings suggest that activation of PK35 through the ceramide pathway may play an important role in signal transduction of TNF-alpha in the Kasumi-1 cell line, while the decreased activation of PK35 may explain the insensitivity of the variant cells towards TNF-alpha. Images Figure 3 Figure 4 Figure 5 Figure 6 PMID:8562342

  18. LINE-BY-LINE CALCULATION OF SPECTRA FROM DIATOMIC MOLECULES AND ATOMS ASSUMING A VOIGT LINE PROFILE

    NASA Technical Reports Server (NTRS)

    Whiting, E. E.

    1994-01-01

    This program predicts the spectra resulting from electronic transitions of diatomic molecules and atoms in local thermodynamic equilibrium. The program produces a spectrum by accounting for the contribution of each rotational and atomic line considered. The integrated intensity of each line is distributed in the spectrum by an approximate Voigt profile. The program can produce spectra for optically thin gases or for cases where simultaneous emission and absorption occurs. In addition, the program can compute the spectrum resulting from the absorption of incident radiation by a column of cold gas or the high-temperature, self-absorbed emission spectrum from a nonisothermal gas. The computed spectrum can be output directly or combined with a slit function and sensitivity calibration to predict the output of a grating spectrograph or a fixed wavelength radiometer. Specifically, the program has the capability to include the following features in any computations: (1) Parallel transitions, in which spin splitting and lambda doubling are ignored (ignoring spin splitting and/or lambda doubling means that the total multiple strength is assumed to reside in a single "effective" line), (2) Perpendicular transitions, in which spin splitting and lambda doubling are ignored, (3) Sigma Pi transitions, in which lambda doubling is ignored, (4) Atomic lines, (5) Option to terminate rotational line calculations when the molecule dissociates due to rotation, (6) Option to include the alternation of line intensities for homonuclear molecules, (7) Use of an approximate Voigt profile for the line shape, and (8) Radiative energy transport in a nonisothermal gas. The output options available in the program are: (1) Tabulation of the spontaneous emission spectrum (i.e., optically thin spectrum) for a 1.0 cm path length, (2) Tabulation of the "true" spectrum, which incorporates spontaneous emission, induced emission, absorption, and externally incident radiation through the equation of

  19. Calibration of H-alpha/H-beta Indexes for Emission Line Objects

    NASA Astrophysics Data System (ADS)

    Hintz, Eric G.; Joner, Michael D.

    2016-01-01

    In Joner and Hintz (2015) they report on a standard star system for calibration of H-alpha and H-beta observations. This work was based on data obtained with the Dominion Astrophysical Observatory 1.2-m telescope. As part of the data acquisition for that project, a large number of emission line objects were also observed. We will report on the preliminary results for the emission line data set. This will include a comparison of equivalent width measurements of each line with the matching index. We will also examine the relation between the absorption line objects previously published and the emission line objects, along with a discussion of the transition point. Object types included are Be stars, high mass x-ray binaries, one low mass x-ray binary, Herbig Ae/Be stars, pre-main sequence stars, T Tauri stars, young stellar objects, and one BY Draconis star. Some of these objects come from Cygnus OB-2, NGC 659, NGC 663, NGC 869 and NGC 884.

  20. Alpha/sub 2/-adrenergic receptors on a platelet precursor cell line, HEL

    SciTech Connect

    McKernan, R.M.; Motulsky, H.J.; Rozansky, D.; Insel, P.A.

    1986-03-01

    The authors have identified ..cap alpha../sub 2/-adrenergic receptors on human erythroleukemia HEL cells, a suspension-growing, bone-marrow-derived cell line related to human platelets. Intact HEL cells were studied using radioligand binding and cAMP accumulation assays. The authors identified saturable specific binding of the ..cap alpha../sub 2/-antagonist (/sup 3/H)yohimbine (yoh) in cells incubated at 37/sup 0/C for 1 hr (B/sub max/ 5900 +/- 2100 sites/cell, K/sub d/ 3.6 +/- 0.9 nM, n = 7). Competition for (/sup 3/H)yoh binding sites with antagonists confirmed that these sites were similar to human ..cap alpha../sub 2/-adrenoceptors from platelets and other resources, as typified by their high affinity for WY-26392, yohimbine and idazoxan, and very low affinity for prazosin. Studies at 37/sup 0/C revealed a low affinity of these sites for catecholamines (K/sub i/ for (-)-epinephrine, 21 ..mu..M; (-)-norepinephrine, 45 ..mu..M, (+)-epinephrine, 80 ..mu..M). When experiments were conducted at 4 /sup 0/C, (-)-epinephrine was able to compete for only 50-60% of the sites specifically labelled by (/sup 3/H)yoh at 37/sup 0/, but (-)-epinephrine had an approximately 10-fold greater affinity for these sites (K/sub i/ at 4 /sup 0/C = 2.4 ..mu..M). In addition, epinephrine inhibited cAMP accumulation stimulated by forskolin and PGE/sub 1/ in HEL cells; this response was inhibited by pertussis toxin. The authors conclude that HEL cells possess ..cap alpha../sub 2/-adrenergic receptors linked to G/sub i/ and thus should serve as a useful model to explore metabolism and regulation of these receptors in human cells.

  1. GAS MOTION STUDY OF Ly{alpha} EMITTERS AT z {approx} 2 USING FUV AND OPTICAL SPECTRAL LINES {sup ,}

    SciTech Connect

    Hashimoto, Takuya; Shimasaku, Kazuhiro; Nakajima, Kimihiko; Ouchi, Masami; Ono, Yoshiaki; Rauch, Michael; Janice Lee; Okamura, Sadanori

    2013-03-01

    We present the results of Magellan/MMIRS and Keck/NIRSPEC spectroscopy for five Ly{alpha} emitters (LAEs) at z {approx_equal} 2.2 for which high-resolution FUV spectra from Magellan/MagE are available. We detect nebular emission lines including H{alpha} on the individual basis and low-ionization interstellar (LIS) absorption lines in a stacked FUV spectrum, and measure average offset velocities of the Ly{alpha} line, {Delta}v {sub Ly{alpha}}, and LIS absorption lines, {Delta}v {sub abs}, with respect to the systemic velocity defined by the nebular lines. For a sample of eight z {approx} 2-3 LAEs without active galactic nucleus from our study and the literature, we obtain {Delta}v {sub Ly{alpha}} = 175 {+-} 35 km s{sup -1}, which is significantly smaller than that of Lyman-break Galaxies (LBGs), {Delta}v {sub Ly{alpha}} {approx_equal} 400 km s{sup -1}. The stacked FUV spectrum gives {Delta}v {sub abs} = -179 {+-} 73 km s{sup -1}, comparable to that of LBGs. These positive {Delta}v {sub Ly{alpha}} and negative {Delta}v {sub abs} suggest that LAEs also have outflows. In contrast to LBGs, however, the LAEs' {Delta}v {sub Ly{alpha}} is as small as |{Delta}v {sub abs}|, suggesting low neutral hydrogen column densities. Such a low column density with a small number of resonant scattering may cause the observed strong Ly{alpha} emission of LAEs. We find an anti-correlation between Ly{alpha} equivalent width (EW) and {Delta}v {sub Ly{alpha}} in a compilation of LAE and LBG samples. Although its physical origin is not clear, this anti-correlation result appears to challenge the hypothesis that a strong outflow, by means of a reduced number of resonant scattering, produces a large EW. If LAEs at z > 6 have similarly small {Delta}v {sub Ly{alpha}} values, constraints on the reionization history derived from the Ly{alpha} transmissivity may need to be revised.

  2. Apoptosis induced by tumor necrosis factor-alpha in rat hepatocyte cell lines expressing hepatitis B virus.

    PubMed Central

    Guilhot, S.; Miller, T.; Cornman, G.; Isom, H. C.

    1996-01-01

    Three well differentiated SV40-immortalized rat hepatocyte cell lines, CWSV1, CWSV2, and CWSV14, and Hepatitis B Virus (HBV)-producing cell lines derived from them were examined for sensitivity to tumor necrosis factor (TNF)-alpha. CWSV1, CWSV2, and CWSV14 cells were co-transfected with a DNA construct containing a dimer of the HBV genome and the neo gene and selected in G418 to generate stable cell lines. Characterization of these cell lines indicated that they contain integrated HBV DNA, contain low molecular weight HBV DNA compatible with the presence of HBV replication intermediates, express HBV transcripts, and produce HBV proteins. The viability of CWSV1, CWSV2, and CWSV2 cells was not significantly altered when they were treated with TNF-alpha at concentrations as high as 20,000 U/ml. The HBV-expressing CWSV1 cell line, SV1di36, and the HBV-expressing CWSV14 cell line, SV14di208, were also not killed when treated with TNF-alpha. However, the HBV-expressing CWSV2 cell line, SV2di366, was extensively killed when treated with TNF-alpha at concentrations ranging from 200 to 20,000 U/ml. Analysis of several different HBV-producing CWSV2 cell lines indicated that TNF-alpha killing depended upon the level of HBV expression. The TNF-alpha-induced cell killing in high HBV-producing CWSV2 cell lines was accompanied by the presence of an oligonucleosomal DNA ladder characteristic of apoptosis. Images Figure 2 Figure 3 Figure 4 Figure 6 Figure 9 Figure 10 Figure 11 PMID:8774135

  3. A new method for the identification of non-Gaussian line profiles in elliptical galaxies

    NASA Technical Reports Server (NTRS)

    Van Der Marel, Roeland P.; Franx, Marijn

    1993-01-01

    A new parameterization for the line profiles of elliptical galaxies, the Gauss-Hermite series, is proposed. This approach expands the line profile as a sum of orthogonal functions which minimizes the correlations between the errors in the parameters of the fit. This method also make use of the fact that Gaussians provide good low-order fits to observed line profiles. The method yields measurements of the line strength, mean radial velocity, and the velocity dispersion as well as two extra parameters, h3 and h4, that measure asymmetric and symmetric deviations of the line profiles from a Gaussian, respectively. The new method was used to derive profiles for three elliptical galaxies which all have asymmetric line profiles on the major axis with symmetric deviations from a Gaussian. Results confirm that elliptical galaxies have complex structures due to their complex formation history.

  4. Spontaneous expression of a low affinity Fc receptor for IgA (Fc alpha R) on human B cell lines.

    PubMed Central

    Millet, I; Briere, F; Vincent, C; Rousset, F; Andreoni, C; De Vries, J E; Revillard, J P

    1989-01-01

    Expression of receptors for IgA (Fc alpha Rs) was investigated on a panel of 35 human B cell lines by labelling with human secretory IgA (0.5 mg/ml) and flow cytometry analysis after staining with fluoresceinated goat anti-human secretory component and/or anti-alpha chain F(ab')2 fragments. Receptors for IgA could be demonstrated on one out of nine Burkitt's lymphoma cell lines, three out of five myeloma cell lines and five out of 21 lymphoblastoid cell lines. The percentage of Fc alpha R-positive cells within the same B cell line varied upon repeated examination. Human dimeric IgA1 lambda myeloma protein revealed the same number of IgA receptor positive cells as did secretory IgA, whereas monomeric IgA did not bind to Fc alpha R. Detection of Fc alpha R was not inhibited when the tests were carried out in the presence of human dimeric IgG, IgM, asialo-orosomucoid, and secretory component but it was abrogated by pre-treatment of the cells with trypsin. The binding characteristics of Fc alpha Rs were studied on the myeloma cell line Esteve, using 125I-labelled human dimeric IgA and secretory IgA. The binding was dose-dependent with rapid kinetics and specific inhibition by unlabelled secretory IgA. Scatchard plot analysis resulted in an equilibrium constant K ranging from 3.2 to 4.7 x 10(6) M/l. No correlation was observed between Fc alpha R expression and differentiation stage, monoclonality, polyclonality of the cell lines, or Ig class produced by the B cells. PMID:2788048

  5. Alpha-2 adrenergic and serotonin-1B receptors in the OK cell, an opossum kidney cell line

    SciTech Connect

    Murphy, T.J.

    1988-01-01

    Alpha-2 adrenergic and serotonin-1B (5HT{sub 1B}) receptors, both negatively-coupled to adenylyl cyclase, were characterized in the OK cell line, a renal proximal tubule epithelial cell line derived from the kidney of a North American opossum. In membrane saturation radioligand binding experiments, ({sup 3}H)yohimbine and ({sup 3}H)rauwolscine labeled an equivalent number of binding sites. Detailed pharmacological analysis of OK cell alpha-2 adrenergic receptors in competition binding assays indicate this receptor is neither an alpha-2A nor an alpha-2B adrenergic receptor subtype, although the alpha-2B receptor subtype-selective drugs prazosin, ARC-239 and chlorpromazine have affinities for OK cell alpha-2 adrenergic receptors similar to those at the alpha-2B receptor subtype. Determinations of agonist potency for inhibition of PTH-stimulated cyclic AMP production and radioligand binding analysis using ({sup 125}I)({minus})-cyanopindolol indicate that a 5HT{sub 1B} receptor is expressed in the OK cell line. A biochemical effector system coupled to this receptor subtype has not been previously described. Several compounds appear to be potent agonists at the 5TH{sub 1B} receptor including the beta adrenergic antagonists cyanopindolol, pindolol, propranolol and alprenolol.

  6. TRIM32 promotes retinoic acid receptor {alpha}-mediated differentiation in human promyelogenous leukemic cell line HL60

    SciTech Connect

    Sato, Tomonobu; Okumura, Fumihiko; Iguchi, Akihiro; Ariga, Tadashi; Hatakeyama, Shigetsugu

    2012-01-06

    Highlights: Black-Right-Pointing-Pointer TRIM32 enhanced RAR{alpha}-mediated transcriptional activity even in the absence of RA. Black-Right-Pointing-Pointer TRIM32 stabilized RAR{alpha} in the human promyelogenous leukemic cell line HL60. Black-Right-Pointing-Pointer Overexpression of TRIM32 in HL60 cells induced granulocytic differentiation. Black-Right-Pointing-Pointer TRIM32 may function as a coactivator for RAR{alpha}-mediated transcription in APL cells. -- Abstract: Ubiquitination, one of the posttranslational modifications, appears to be involved in the transcriptional activity of nuclear receptors including retinoic acid receptor {alpha} (RAR{alpha}). We previously reported that an E3 ubiquitin ligase, TRIM32, interacts with several important proteins including RAR{alpha} and enhances transcriptional activity of RAR{alpha} in mouse neuroblastoma cells and embryonal carcinoma cells. Retinoic acid (RA), which acts as a ligand to nuclear receptors including RAR{alpha}, plays crucial roles in development, differentiation, cell cycles and apoptosis. In this study, we found that TRIM32 enhances RAR{alpha}-mediated transcriptional activity even in the absence of RA and stabilizes RAR{alpha} in the human promyelogenous leukemic cell line HL60. Moreover, we found that overexpression of TRIM32 in HL60 cells suppresses cellular proliferation and induces granulocytic differentiation even in the absence of RA. These findings suggest that TRIM32 functions as one of the coactivators for RAR{alpha}-mediated transcription in acute promyelogenous leukemia (APL) cells, and thus TRIM32 may become a potentially therapeutic target for APL.

  7. Non-LTE profiles of the Al I autoionization lines. [for solar model atmospheres

    NASA Technical Reports Server (NTRS)

    Finn, G. D.; Jefferies, J. T.

    1974-01-01

    A non-LTE formulation is given for the transfer of radiation in the autoionizing lines of neutral aluminum at 1932 and 1936 A through both the Bilderberg and Harvard-Smithsonian model atmospheres. Numerical solutions for the common source function of these lines and their theoretical line profiles are calculated and compared with the corresponding LTE profiles. The results show that the non-LTE profiles provide a better match with the observations. They also indicate that the continuous opacity of the standard solar models should be increased in this wavelength region if the center-limb variations of observed and theoretical profiles of these lines are to be in reasonable agreement.

  8. Line profile reconstruction: validation and comparison of reconstruction methods

    NASA Astrophysics Data System (ADS)

    Tsai, Ming-Yi; Yost, Michael G.; Wu, Chang-Fu; Hashmonay, Ram A.; Larson, Timothy V.

    Currently, open path Fourier transform infrared (OP-FTIR) spectrometers have been applied in some fenceline monitoring, but their use has been limited because path-integrated concentration measurements typically only provide an estimate of the average concentration. We present a series of experiments that further explore the use of path-integrated measurements to reconstruct various pollutant distributions along a linear path. Our experiments were conducted in a ventilation chamber using an OP-FTIR instrument to monitor a tracer-gas release over a fenceline configuration. These experiments validate a line profile method (1-D reconstruction). Additionally, we expand current reconstruction techniques by applying the Bootstrap to our measurements. We compared our reconstruction results to our point samplers using the concordance correlation factor (CCF). Of the four different release types, three were successfully reconstructed with CCFs greater than 0.9. The difficult reconstruction involved a narrow release where the pollutant was limited to one segment of the segmented beampath. In general, of the three reconstruction methods employed, the average of the bootstrapped reconstructions was found to have the highest CCFs when compared to the point samplers. Furthermore, the bootstrap method was the most flexible and allowed a determination of the uncertainty surrounding our reconstructions.

  9. Brain blood vessel segmentation using line-shaped profiles

    NASA Astrophysics Data System (ADS)

    Babin, Danilo; Pižurica, Aleksandra; De Vylder, Jonas; Vansteenkiste, Ewout; Philips, Wilfried

    2013-11-01

    Segmentation of cerebral blood vessels is of great importance in diagnostic and clinical applications, especially for embolization of cerebral aneurysms and arteriovenous malformations (AVMs). In order to perform embolization of the AVM, the structural and geometric information of blood vessels from 3D images is of utmost importance. For this reason, the in-depth segmentation of cerebral blood vessels is usually done as a fusion of different segmentation techniques, often requiring extensive user interaction. In this paper we introduce the idea of line-shaped profiling with an application to brain blood vessel and AVM segmentation, efficient both in terms of resolving details and in terms of computation time. Our method takes into account both local proximate and wider neighbourhood of the processed pixel, which makes it efficient for segmenting large blood vessel tree structures, as well as fine structures of the AVMs. Another advantage of our method is that it requires selection of only one parameter to perform segmentation, yielding very little user interaction.

  10. Observations of Ha Line Profiles in Be Stars Using 45 cm Cassegrain Telescope at Arthur C Clarke Institute

    NASA Astrophysics Data System (ADS)

    Gunasekera, S.; Adassuriya, J.; Medagangoda, N. I.

    2008-12-01

    H-alpha line profiles of 13 Be starts (mv d6.9) were observed using 45 cm Cassegrain telescope at the Arthur C Clarke Institute, Sri Lanka during the period of August 2005 to March 2006. High resolution spectra of these Be stars were obtained using 1200 lines/mm reflective grating in first order with resolution R=λ/Δλ=76800 and linear spectral dispersion 0.31 Å per pixel at 6563 Å in order to find out line parameters such as equivalent width, full width at half-maxima, V/R ratios etc. A study of the correlations between different pairs of parameters was obtained and compared with previous analysis to see the behavior of circumstellar disk. We found a good correlation (0.8) between FWHM and v sin i and strong correlation (0.96) between the Ip/Ic and the equivalent width. The drastic changes of the V/R ratio in profiles HR5941 and HR6712 imply the circumstellar disk is more likely an elliptical shape and undergoes slow apsidal motion. The inclination angles (i) were estimated for each star using the theoretical vsin i values and assuming star rotates in 0.8Vc and are matched with the structure of the line profiles.

  11. Estimation of the solar Lyman alpha flux from ground based measurements of the Ca II K line

    NASA Technical Reports Server (NTRS)

    Rottman, G. J.; Livingston, W. C.; White, O. R.

    1990-01-01

    Measurements of the solar Lyman alpha and Ca II K from October 1981 to April 1989 show a strong correlation (r = 0.95) that allows estimation of the Lyman alpha flux at 1 AU from 1975 to December 1989. The estimated Lyman alpha strength of 3.9 x 10 to the 11th + or - 0.15 x 10 to the 11th photons/s sq cm on December 7, 1989 is at the same maximum levels seen in Cycle 21. Relative to other UV surrogates (sunspot number, 10.7 cm radio flux, and He I 10830 line strength), Lyman alpha estimates computed from the K line track the SME measurements well from solar maximum, through solar minimum, and into Cycle 22.

  12. Identification of cDNA encoding an additional. alpha. subunit of a human GTP-binding protein: Expression of three. alpha. sub i subtypes in human tissues and cell lines

    SciTech Connect

    Kim, S.; Ang, S.L.; Bloch, D.B.; Bloch, K.D.; Kawahara, Y.; Tolman, C.; Lee, R.; Seidman, J.G.; Neer, E.J. )

    1988-06-01

    The guanine nucleotide-binding proteins (G proteins), which mediate hormonal regulation of many membrane functions, are composed of {alpha}, {beta}, and {gamma} subunits. The authors have cloned and characterized cDNA from a human T-cell library encoding a form of {alpha}{sub i} that is different from the human {alpha}{sub i} subtypes previously reported. {alpha}{sub i} is the {alpha} subunit of a class of G proteins that inhibits adenylate cyclase and regulates other enzymes and ion channels. This cDNA encodes a polypeptide of 354 amino acids and is assigned to encode the {alpha}{sub i-3} subtype of G proteins on the basis of its similarity to other {alpha}{sub i}-like cDNAs and the presence of a predicted site for ADP ribosylation by pertussis toxin. They have determined the expression of mRNA for this and two other subtypes of human {alpha}{sub i} ({alpha}{sub i-1} and {alpha}{sub i-2}) in a variety of human fetal tissues and in human cell lines. All three {alpha}{sub i} subtypes were present in the tissues tested. However, analysis of individual cell types reveals specificity of {alpha}{sub i-1} expression. mRNA for {alpha}{i-1} is absent in T cells, B cells, and monocytes but is present in other cell lines. The finding of differential expression of {alpha}{sub i-1} genes may permit characterization of distinct physiological roles for this {alpha}{sub i} subunit. mRNA for {alpha}{sub i-2} and {alpha}{sub i-3} was found in all the primary and transformed cell lines tested. Thus, some cells contain all three {alpha}{sub i} subtypes. This observation raises the question of how cells prevent cross talk among receptors that are coupled to effectors through such similar {alpha} proteins.

  13. Interindividual concordance of methylation profiles in human genes for tumor necrosis factors alpha and beta.

    PubMed Central

    Kochanek, S; Toth, M; Dehmel, A; Renz, D; Doerfler, W

    1990-01-01

    The DNA in mammalian genomes is characterized by complex patterns of DNA methylation that reflect the states of all genetic activities of that genome. The modified nucleotide 5-methyldeoxycytidine (5mdC) can affect the interactions of specific proteins with DNA sequence motifs. The most extensively studied effect of sequence-specific methylations is that of the long-term silencing of eukaryotic (mammalian) promoters. We have initiated studies on the methylation status of parts of the human genome to view patterns of DNA methylation as indicators for genetic activities. In this report, analyses using both restriction enzyme--Southern blotting and the very precise genomic sequencing technique have been done. The genes for tumor necrosis factors (TNF) alpha and beta--in particular, their 5'-upstream and promoter regions--have been investigated in DNA isolated from human lymphocytes, granulocytes, and sperm. The results are characterized by a remarkable interindividual concordance of DNA methylation in specific human cell types. The patterns are identical in the DNA from one cell type for different individuals even of different genetic origins but different in the DNA from different cell types. As an example, in the DNA from human granulocytes of 15 different individuals (ages 20-48 yr, both sexes), 5mdC residues have been localized by the genomic sequencing technique in three identical sequence positions in the 5'-upstream region and in one downstream position of the gene encoding TNF-alpha. The promoter of this gene is free of 5mdC, and TNF-alpha is expressed in human granulocytes. The TNF-beta promoter is methylated in granulocytes from 9 different individuals, and TNF-beta is not expressed. In human lymphocytes, the main source of TNF-beta, the TNF-beta promoter is free of 5mdC residues. All 5'-CG-3' sites studied in the TNF-alpha and -beta genes are methylated in DNA from human sperm. In human cell lines HL-60, Jurkat, and RPMI 1788, the extent of DNA methylation

  14. A catalog of early-type emission-line stars and Hα line profiles from LAMOST DR2

    NASA Astrophysics Data System (ADS)

    Hou, Wen; Luo, A.-Li; Hu, Jing-Yao; Yang, Hai-Feng; Du, Chang-De; Liu, Chao; Lee, Chien-De; Lin, Chien-Cheng; Wang, Yue-Fei; Zhang, Yong; Cao, Zi-Huang; Hou, Yong-Hui

    2016-09-01

    We present a catalog including 11 204 spectra of 10 436 early-type emission-line stars from LAMOST DR2, among which 9752 early-type emission-line spectra are newly discovered. For these early-type emission-line stars, we discuss the morphological and physical properties of their low-resolution spectra. In this spectral sample, the Hα emission profiles display a wide variety of shapes. Based on the Hα line profiles, these spectra are categorized into five distinct classes: single-peak emission, single-peak emission in absorption, double-peak emission, double-peak emission in absorption, and P-Cygni profiles. To better understand what causes the Hα line profiles, we divide these objects into four types from the perspective of physical classification, which include classical Be stars, Herbig Ae/Be stars, close binaries and spectra contaminated by HΠ regions. The majority of Herbig Ae/Be stars and classical Be stars are identified and separated using a (H-K, K-W1) color-color diagram. We also discuss 31 binary systems that are listed in the SIMBAD on-line catalog and identify 3600 spectra contaminated by HΠ regions after cross-matching with positions in the Dubout-Crillon catalog. A statistical analysis of line profiles versus classifications is then conducted in order to understand the distribution of Hα profiles for each type in our sample. Finally, we also provide a table of 172 spectra with Fe Π emission lines and roughly calculate stellar wind velocities for seven spectra with P-Cygni profiles.

  15. Iron K-Alpha Lines from Ionized Discs in Z-Type X-Ray

    NASA Astrophysics Data System (ADS)

    Brandt, W. M.; Matt, G.

    1994-06-01

    The properties of the iron Kα line emitted by a photoionized accretion disc in a Z-type X-ray binary system are determined for different values of the mass accretion rate and disc inclination angle. We consider a geometry where the accretion disc is illuminated by X-rays emitted from a spherical, optically thick Comptonized cloud, representing the magnetosphere on the horizontal branch, and the magnetosphere plus puffed accretion disc on the normal and flaring branches. We find that line profiles can be complex due to Doppler, relativistic, shadowing, line-blending, resonant trapping and other effects. The iron Kα line equivalent width, intrinsic width and centroid energy vary in a tortuous manner as a function of the accretion rate, cloud radius and inclination angle. We examine the reasons for this behaviour and discuss how it will affect inferences about the physical states of Z-sources based on their iron line properties. We compare our results with available data, in particular on Cygnus X-2, and indicate how tests of Z-source models could be made using high-energy-resolution measurements like those expected from AS CA.

  16. Effect of a progressive sound wave on the profiles of spectral lines. 2: Asymmetry of faint Fraunhofer lines. [absorption spectra

    NASA Technical Reports Server (NTRS)

    Kostyk, R. I.

    1974-01-01

    The absorption coefficient profile was calculated for lines of different chemical elements in a medium with progressive sound waves. Calculations show that (1) the degree and direction of asymmetry depend on the atomic ionization potential and the potential of lower level excitation of the individual line; (2) the degree of asymmetry of a line decreases from the center toward the limb of the solar disc; and (3) turbulent motions 'suppress' the asymmetry.

  17. Establishment of type II 5alpha-reductase over-expressing cell line as an inhibitor screening model.

    PubMed

    Jang, Sunhyae; Lee, Young; Hwang, Seong-Lok; Lee, Min-Ho; Park, Su Jin; Lee, In Ho; Kang, Sangjin; Roh, Seok-Seon; Seo, Young-Joon; Park, Jang-Kyu; Lee, Jeung-Hoon; Kim, Chang Deok

    2007-01-01

    Dihydrotestosterone (DHT) is the most potent male hormone that causes androgenetic alopecia. The type II 5alpha-reductase is an enzyme that catalyzes the conversion of testosterone (T) to DHT, therefore it can be expected that specific inhibitors for type II 5alpha-reductase may improve the pathophysiologic status of androgenetic alopecia. In this study, we attempted to establish the reliable and convenient screening model for type II 5alpha-reductase inhibitors. After transfection of human cDNA for type II 5alpha-reductase into HEK293 cells, the type II 5alpha-reductase over-expressing stable cells were selected by G418 treatment. RT-PCR and Western blot analyses confirmed that type II 5alpha-reductase gene was expressed in the stable cells. In in vitro enzymatic assay, 10 microg of stable cell extract completely converted 1 microCi (approximately 0.015 nmol) of T into DHT. The type II 5alpha-reductase activity was inhibited by finasteride in a dose-dependent manner, confirming the reliability of screening system. In cell culture condition, 2 x 10(5) of stable cells completely converted all the input T (approximately 0.03 nmol) into DHT by 4h incubation, demonstrating that the stable cell line can be used as a cell-based assay system. Using this system, we selected the extracts of Curcumae longae rhizoma and Mori ramulus as the potential inhibitors for type II 5alpha-reductase. These results demonstrate that the type II 5alpha-reductase over-expressing stable cell line is a convenient and reliable model for screening and evaluation of inhibitors. PMID:17646096

  18. VEGF Secretion is Inhibited by Interferon-Alpha in Several Melanoma Cell Lines

    PubMed Central

    Raig, Ene T.; Jones, Natalie B.; Varker, Kimberly A.; Benniger, Kristen; Go, Michael R.; Biber, Jennifer L.; Lesinski, Gregory B.

    2008-01-01

    Interferon-alpha (IFN-α) is employed in the treatment of malignant melanoma; however, it mediates regression of disease in only 10–15% of patients. Currently, its mechanism of action is uncharacterized. Low-dose IFN-α exerts anti-angiogenic effects when used in the treatment of life-threatening hemangiomas of infancy, suggesting anti-angiogenesis as a mechanism of action. IFN-α may exert its anti-tumor effect in the setting of advanced malignancy by inhibiting the secretion of vascular endothelial growth factor (VEGF), a pro-angiogenic substance. We hypothesized that IFN-α would decrease the release of VEGF by melanoma tumors. We studied the effect of IFN-α on VEGF production in nine human melanoma cell lines. We also examined VEGF levels in 49 patients with advanced malignancies who received low-dose IFN-α and interleukin-12 (IL-12) on an NCI-sponsored phase I trial. Human melanoma cell lines produced varying amounts of VEGF in vitro (60–1500 pg/mL at 48 h). Certain melanoma cell lines such as 18105 MEL secreted low levels of VEGF (152 pg/mL) after 48 h of culture, whereas other lines secreted very high levels (FO-1 3,802 pg/mL). Treatment of melanoma cells with IFN-α (2000 U/mL) decreased VEGF secretion by 40–60% in VEGF-high cell lines; however, this effect was not demonstrated in VEGF-low cell lines. In cancer patients, pretreatment VEGF plasma levels varied from 471 to 4200 pg/mL. A decrease in VEGF plasma levels after treatment directly correlated with the number of treatment cycles administered (Pearson correlation, p = 0.04). In summary, IFN-α inhibits VEGF secretion by melanoma cell lines in vitro and may have similar actions in malignancies that respond to IFN-α treatment. PMID:18771339

  19. Comparative gene expression profiles induced by PPAR{gamma} and PPAR{alpha}/{gamma} agonists in rat hepatocytes

    SciTech Connect

    Rogue, Alexandra; Renaud, Marie Pierre; Claude, Nancy; Guillouzo, Andre; Spire, Catherine

    2011-07-01

    Species-differential toxic effects have been described with PPAR{alpha} and PPAR{gamma} agonists between rodent and human liver. PPAR{alpha} agonists (fibrates) are potent hypocholesterolemic agents in humans while they induce peroxisome proliferation and tumors in rodent liver. By contrast, PPAR{gamma} agonists (glitazones) and even dual PPAR{alpha}/{gamma} agonists (glitazars) have caused idiosyncratic hepatic and nonhepatic toxicities in human without evidence of any damage in rodent during preclinical studies. The mechanisms involved in such differences remain largely unknown. Several studies have identified the major target genes of PPAR{alpha} agonists in rodent liver while no comprehensive analysis has been performed on gene expression changes induced by PPAR{gamma} and dual PPAR{alpha}/{gamma} agonists. Here, we investigated transcriptomes of rat hepatocytes after 24 h treatment with two PPAR{gamma} (troglitazone and rosiglitazone) and two PPAR{alpha}/{gamma} (muraglitazar and tesaglitazar) agonists. Although, hierarchical clustering revealed a gene expression profile characteristic of each PPAR agonist class, only a limited number of genes was specifically deregulated by glitazars. Functional analyses showed that many genes known as PPAR{alpha} targets were also modulated by both PPAR{gamma} and PPAR{alpha}/{gamma} agonists and quantitative differences in gene expression profiles were observed between these two classes. Moreover, most major genes modulated in rat hepatocytes were also found to be deregulated in rat liver after tesaglitazar treatment. Taken altogether, these results support the conclusion that differential toxic effects of PPAR{alpha} and PPAR{gamma} agonists in rodent liver do not result from transcriptional deregulation of major PPAR target genes but rather from qualitative and/or quantitative differential responses of a small subset of genes.

  20. alpha 2-adrenoreceptors profile modulation. 2. Biphenyline analogues as tools for selective activation of the alpha 2C-subtype.

    PubMed

    Gentili, Francesco; Ghelfi, Francesca; Giannella, Mario; Piergentili, Alessandro; Pigini, Maria; Quaglia, Wilma; Vesprini, Cristian; Crassous, Pierre-Antoine; Paris, Hervé; Carrieri, Antonio

    2004-12-01

    A series of derivatives structurally related to biphenyline (3) was designed with the aim to modulate selectivity toward the alpha(2)-AR subtypes. The results obtained demonstrated that the presence of a correctly oriented function with positive electronic effect (+sigma) in portion X of the ligands is an important factor for significant alpha(2C)-subtype selectivity (imidazolines 5, 13, 16, and 19). Homology modeling and docking studies support experimental data and highlight the crucial role for the hydrogen bond between the pyridine nitrogen in position 3 of 5 and the NH-indole ring of Trp6.48, which is favorably oriented in the alpha(2C)-subtype, only. PMID:15566287

  1. The Effect of Area Averaging on the Approximated Profile of the H α Spectral Line

    NASA Astrophysics Data System (ADS)

    Bodnárová, M.; Utz, D.; Rybák, J.

    2016-04-01

    The Hα line is massively used as a diagnostics of the chromosphere. Often one needs to average the line profile over some area to increase the signal to noise ratio. Thus it is important to understand how derived parameters vary with changing approximations. In this study we investigate the effect of spatial averaging of a selected area on the temporal variations of the width, the intensity and the Dopplershift of the Hα spectral line profile. The approximated profile was deduced from co-temporal observations in five points throughout the Hα line profile obtained by the tunable Lyot filter installed on the Dutch Open Telescope. We found variations of the intensity and the Doppler velocities, which were independent of the size of the area used for the computation of the area averaged Hα spectral line profile.

  2. The blueshifted Pa alpha broad line component and the origin of strong iron emission in the ultraluminous infrared galaxy IRAS 07598+6508

    NASA Technical Reports Server (NTRS)

    Taniguchi, Yoshiaki; Kawara, Kimiaki; Murayama, Takashi; Sato, Yasunori

    1994-01-01

    We present the Pa alpha emission profile of the ultraluminous infrared galaxy (ULFIRG) IRAS 07598+6508 which is an unusually strong Fe II emitter in the optical. The Pa alpha emission line profile shows a blueshifted broad component (FWHM approximately equal to 3900 km/sec) together with a narrow core (FWHM less than or equal to 530 km/sec). The presence of the broad line component strongly suggests that IRAS 07598+6508 has an active galactic nucleus, supporting a scenario of merger-induced quasar formation proposed by Sanders et al. (1988), although we cannot rule out the possibility of a supernova-driven high speed wind. Possible detection of (Fe II) 1.893 micrometer emission is also reported. It is shown that strong Fe II emitters such as IRAS 07598+6508 have intermediate IRAS color properties between normal quasars and cold ultraluminous infrared galaxies. We thus suggest an evolutionary link from cold ULFIRG through warm ULFIRG and Fe II ULFIRG to quasars.

  3. Reliable and efficient program for fitting Galatry and Voigt profiles to spectral data on multiple lines.

    PubMed

    Ouyang, X; Varghese, P L

    1989-04-15

    Experimental data with multiple overlapping spectral lines must often be fitted to theoretical line shape models. This paper describes an efficient program for performing least-squares fits of such data to Galatry and Voigt profiles. The algorithm and program design considerations are presented in detail, and some examples are given to demonstrate its use. The procedure described in this paper may also be used for more complex line shape profiles. PMID:20548696

  4. Personalized chemotherapy profiling using cancer cell lines from selectable mice

    PubMed Central

    Kamiyama, Hirohiko; Rauenzahn, Sherri; Shim, Joong Sup; Karikari, Collins A.; Feldmann, Georg; Hua, Li; Kamiyama, Mihoko; Schuler, F. William; Lin, Ming-Tseh; Beaty, Robert M.; Karanam, Balasubramanyam; Liang, Hong; Mullendore, Michael E.; Mo, Guanglan; Hidalgo, Manuel; Jaffee, Elizabeth; Hruban, Ralph H.; Jinnah, H. A.; Roden, Richard B. S.; Jimeno, Antonio; Liu, Jun O.; Maitra, Anirban; Eshleman, James R.

    2013-01-01

    Purpose High-throughput chemosensitivity testing of low-passage cancer cell lines can be used to prioritize agents for personalized chemotherapy. However, generating cell lines from primary cancers is difficult, because contaminating stromal cells overgrow the malignant cells. Experimental Design We produced a series of hypoxanthine phosphoribosyl transferase (hprt)-null immunodeficient mice. During growth of human cancers in these mice, hprt-null murine stromal cells replace their human counterparts. Results Pancreatic and ovarian cancers explanted from these mice were grown in selection media to produce pure human cancer cell lines. We screened one cell line with a 3,131-drug panel and identified seventy-seven FDA approved drugs with activity, including two novel drugs to which the cell line was uniquely sensitive. Xenografts of this carcinoma were selectively responsive to both drugs. Conclusion Chemotherapy can be personalized using patient-specific cell lines derived in biochemically selectable mice. PMID:23340293

  5. Measurements of neutral density profiles using a deuterium Balmer-alpha diagnostic in the C-2 FRC plasma

    SciTech Connect

    Gupta, Deepak K.; Deng, B. H.; Knapp, K.; Sun, X.; Thompson, M. C.

    2012-10-15

    In C-2 field-reversed configuration (FRC) device, low neutral density outside the FRC separatrix is required to minimize the charge exchange loss of fast particles. Titanium gettering is used in C-2 to reduce the wall recycling and keep the neutral density low in plasma edge. The measurements of neutral density radial profile are desirable to understand the plasma recycling and the effects of titanium gettering. These measurements are also needed to study the interaction of neutral beams with FRC plasma and confinement of fast ions. Diagnostic based on absolute deuterium Balmer-alpha (D-alpha) radiation measurements is developed and deployed on C-2 device to measure the radial profile of neutral density. Simultaneous measurements of electron density and temperature are done using CO{sub 2} interferometer, Thomson scattering, and triple probes diagnostics along with absolute D-alpha radiation. Abel inversion was performed to get the time dependent radial profile of the local D-alpha emission density. Neutral density profiles are obtained under different machine conditions of titanium deposition.

  6. Analysis of magnesium XI line profiles from solar active regions

    NASA Technical Reports Server (NTRS)

    Blake, R. L.; Cowan, R. D.; Felthauser, H.; Fenimore, E. E.; Hockaday, M. P.; Bely-Dubau, F.; Faucher, P.; Steenman-Clark, L.

    1984-01-01

    High-resolution solar spectra of the Mg XI 1s2 1S0-1s2p 1P1 resonance line at 9.169 A and the associated nearby satellite lines obtained from two rocket-borne crystal spectrometer measurements are presented. Comparisons with two independent sets of theoretical calculations for the 1s2nl-1s2pnl dielectronic satellite lines with n = 3-7 indicate electron temperatures of 4-4.5 million K. Measured line widths indicate either that the ion temperature exceeds the electron temperature by about a million K or that about 28 km/s of turbulence is present.

  7. Efficient computation of some speed-dependent isolated line profiles

    NASA Astrophysics Data System (ADS)

    Tran, H.; Ngo, N. H.; Hartmann, J.-M.

    2013-11-01

    This paper provides FORTRAN subroutines for the calculation of the partially-Correlated quadratic-Speed-Dependent Hard-Collision (pCqSDHC) profile and of its two limits: the quadratic-Speed-Dependent Voigt (qSDV) and the quadratic-Speed-Dependent Hard-Collision (qSDHC) profiles. Numerical tests successfully confirm the analytically derived fact that all these profiles can be expressed as combinations of complex Voigt probability functions. Based on a slightly improved version of the CPF subroutine [Humlicek. J Quant Spectrosc Radiat Transfer 1979;21:309] for the calculation of the complex probability function, we show that the pCqSDHC, qSDHC and qSDV profiles can be quickly calculated with an accuracy better than 10-4.

  8. Use of molecular markers aids in the development of diverse inbred backcross lines in beit alpha cucumber (Cucumis sativus L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beit Alpha cucumber (Cucumis sativus L.) is a Mediterranean fresh-market type with a relatively narrow genetic base. To broaden its base for plant improvement, 42 diverse accessions were compared employing a previously defined standard marker array to choose wide-based parental lines for use in bac...

  9. Use of molecular markers aids in the development of diverse inbred backcross lines in Beit Alpha cucumber (Cucumis sativus L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beit Alpha cucumber (Cucumis sativus L.) is a Mediterranean fresh-market type with a relatively narrow genetic base. To broaden its base for plant improvement, 42 diverse accessions were compared employing a previously defined standard marker array to choose wide-based parental lines for use in bac...

  10. Estimation of Mass-Loss Rates from Emission Line Profiles in the UV Spectra of Cool Stars

    NASA Technical Reports Server (NTRS)

    Carpenter, K. G.; Robinson, R. D.; Harper, G. M.

    1999-01-01

    The photon-scattering winds of cool, low-gravity stars (K-M giants and supergiants) produce absorption features in the strong chromospheric emission lines. This provides us with an opportunity to assess important parameters of the wind, including flow and turbulent velocities, the optical depth of the wind above the region of photon creation, and the star's mass-loss rate. We have used the Lamers et al. Sobolev with Exact Integration (SEI) radiative transfer code along with simple models of the outer atmospheric structure to compute synthetic line profiles for comparison with the observed line profiles. The SEI code has the advantage of being computationally fast and allows a great number of possible wind models to be examined. We therefore use it here to obtain initial first-order estimates of the wind parameters. More sophisticated, but more time-consuming and resource intensive calculations will be performed at a later date, using the SEI-deduced wind parameters as a starting point. A comparison of the profiles over a range of wind velocity laws, turbulence values, and line opacities allows us to constrain the wind parameters, and to estimate the mass-loss rates. We have applied this analysis technique (using lines of Mg II, 0 I, and Fe II) so far to four stars: the normal K5-giant alpha Tau, the hybrid K-giant gamma Dra, the K5 supergiant lambda Vel, and the M-giant gamma Cru. We present in this paper a description of the technique, including the assumptions which go into its use, an assessment of its robustness, and the results of our analysis.

  11. Interplanetary Lyman-alpha spectral profiles and intensities for both repulsive and attractive solar force fields Predicted absorption pattern by a hydrogen cell

    NASA Astrophysics Data System (ADS)

    Lallement, R.; Bertaux, J. L.; Dalaudier, F.

    1985-09-01

    The velocity of H atoms in the vicinity of the sun can be modified through ionization by solar-wind charge exchange and solar EUV photoionization, and through solar gravity. A computer-code model was developed to study these effects in detail; the model includes line profile computation in the repulsive case when the solar Lyman-alpha radiation pressure exceeds solar gravity. The model also predicts the distributions of the intensity I(phi) and reduction factor R(phi) of the intensity when the H cell is activated to observation planes perpendicular to the sun-earth line as a function of angle phi. This particular geometry applies to the space experiment flown on the Prognoz 5 and 6 spacecraft. The basic findings of the parametric study are presented.

  12. The alpha 2-adrenoceptors of the human retinoblastoma cell line (Y79) may represent an additional example of the alpha 2C-adrenoceptor.

    PubMed Central

    Gleason, M. M.; Hieble, J. P.

    1992-01-01

    1. In agreement with the literature, correlation of the ability of a series of agonists and antagonists to displace [3H]-rauwolscine binding shows the alpha 2-adrenoceptors of HT29 cells, NG108-15 cells, OK cells and homogenates of rat sublingual gland to represent four distinct subtypes. 2. [3H]-rauwolscine also bound with high affinity (KD = 0.30 +/- 0.10 mM) to a human retinoblastoma cell line (Y79). Specific binding represents 73% of total binding, and a Bmax of 38 +/- 1 fmol mg-1 protein was determined. 3. Correlation of antagonist affinities against [3H]-rauwolscine with corresponding values in the other four tissue sources showed the Y79 cells to resemble most closely the OK cells, the prototype example of an alpha 2C-adrenoceptor, with a correlation coefficient of 0.90 and a regression slope of 1.01 being obtained for 10 antagonists in these two systems. 4. Comparison of KD values for [3H]-rauwolscine also showed a similarity between the OK cells (0.19 +/- 0.07 nM) and Y79 cells. 5. These data suggest that the human retinoblastoma cell line may represent an additional example of the alpha 2C-adrenoceptor subtype. PMID:1358385

  13. Accretion disk wind in the AGN broad-line region: Spectroscopically resolved line profile variations in Mrk 110

    NASA Astrophysics Data System (ADS)

    Kollatschny, W.

    2003-08-01

    Detailed line profile variability studies of the narrow line Seyfert 1 galaxy Mrk 110 are presented. We obtained the spectra in a variability campaign carried out with the 9.2 m Hobby-Eberly Telescope at McDonald Observatory. The integrated Balmer and helium (He I, II) emission lines are delayed by 3 to 33 light days to the optical continuum variations respectively. The outer wings of the line profiles respond much faster to continuum variations than the central regions. The comparison of the observed profile variations with model calculations of different velocity fields indicates an accretion disk structure of the broad line emitting region in Mrk 110. Comparing the velocity-delay maps of the different emission lines among each other a clear radial stratification in the BLR can be recognized. Furthermore, delays of the red line wings are slightly shorter than those of the blue wings. This indicates an accretion disk wind in the BLR of Mrk 110. We determine a central black hole mass of M = 1.8x 107 Msun. Because of the poorly known inclination angle of the accretion disk this is a lower limit only. Based on observations obtained with the Hobby-Eberly Telescope, which is a joint project of the University of Texas at Austin, the Pennsylvania State University, Stanford University, Ludwig-Maximilians-Universität München, and Georg-August-Universität Göttingen.

  14. Theoretical description of spectral line profiles of parent molecules in cometary comae

    NASA Technical Reports Server (NTRS)

    Hu, Hong-Yao; Larson, Harold P.; Hsieh, K. C.

    1991-01-01

    The present overview of cometary spectral-line profiles obtainable through advancements in high-resolution spectroscopic studies, which allow the retrieval of coma kinematic properties from velocity-resolved spectral-line profiles, incorporates the most important gas dynamic processes into an outflow model which is tailored to the interpretation of spectroscopic observations of parent molecules. The model is then used to study the influence on parent-molecule spectral line profile formation of the field-of-view, the expansion velocity, the kinetic temperature, and the anisotropic outflow distributions.

  15. Smoothed Temporal Variance Spectrum: weak line profile variations and NRP diagnostics

    NASA Astrophysics Data System (ADS)

    Kholtygin, A. F.; Sudnik, N. P.

    2016-05-01

    We describe the version of the Temporal Variance Spectrum (TVS, Fullerton, Gies & Bolton) method with pre-smoothed line profile (smoothed Temporal Variance Spectrum, smTVS). This method introduced by Kholtygin et al. can be used to detect the ultra weak variations of the line profile even for very noisy stellar spectra. We also describe how to estimate the mode of the non-radial pulsations (NRP) using the TVS and smTVS with different time spans. The influence of the rotational modulation of the line profile on the TVS is considered. The analysis of the contribution of NRP and rotational modulation in the global TVS is studied.

  16. Shotgun Lipidomic Profiling of the NCI60 Cell Line Panel Using Rapid Evaporative Ionization Mass Spectrometry.

    PubMed

    Strittmatter, Nicole; Lovrics, Anna; Sessler, Judit; McKenzie, James S; Bodai, Zsolt; Doria, M Luisa; Kucsma, Nora; Szakacs, Gergely; Takats, Zoltan

    2016-08-01

    Rapid evaporative ionization mass spectrometry (REIMS) was used for the rapid mass spectrometric profiling of cancer cell lines. Spectral reproducibility was assessed for three different cell lines, and the extent of interclass differences and intraclass variance was found to allow the identification of these cell lines based on the REIMS data. Subsequently, the NCI60 cell line panel was subjected to REIMS analysis, and the resulting data set was investigated for its distinction of individual cell lines and different tissue types of origin. Information content of REIMS spectral profiles of cell lines were found to be similar to those obtained from mammalian tissues although pronounced differences in relative lipid intensity were observed. Ultimately, REIMS was shown to detect changes in lipid content of cell lines due to mycoplasma infection. The data show that REIMS is an attractive means to study cell lines involving minimal sample preparation and analysis times in the range of seconds. PMID:27377867

  17. The alpha Centauri Line of Sight: D/H Ratio, Physical Properties of Local Interstellar Gas, and Measurement of Heated Hydrogen (The 'Hydrogen Wall') Near the Heliopause

    NASA Technical Reports Server (NTRS)

    Linsky, Jeffrey L.; Wood, Brian E.

    1996-01-01

    We analyze high-resolution spectra of the nearby (1.34 pc) stars alpha Cen A (G2 V) and alpha Cen B (K1 V), which were obtained with the Goddard High Resolution Spectrograph on the Hubble Space Telescope. The observations consist of echelle spectra of the Mg II 2800 A and Fe II 2599 A resonance lines and the Lyman-alpha lines of hydrogen and deuterium. The interstellar gas has a velocity (v = - 18.0 +/- 0.2 km/s) consistent with the local flow vector proposed for this line of sight by Lailement & Berlin (1992). The temperature and nonthermal velocity inferred from the Fe II, Mg II, and D I line profiles are T = 5400 +/- 500 K and xi = 1.20 +/- 0.25 km/s, respectively. However, single-component fits to the H I Lyman-alpha lines yield a Doppler parameter (b(sub HI) = 11.80 km/s) that implies a significantly warmer temperature of 8350 K, and the velocity of the H I absorption (v = - 15.8 +/- 0.2 km/s) is redshifted by about 2.2 km/s with respect to the Fe II, Mg II, and D I lines. The one-component model of the interstellar gas suggests natural logarithm N base HI = 18.03 +/- 0.01 and D/H = (5.7 +/- 0.2) x 10(exp -6) . These parameters lead to a good fit to the observed spectra, but this model does not explain the higher temperature and redshift of H I relative to the other interstellar lines. The most sensible way to resolve the discrepancy between H(I) and the other lines is to add a second absorption component to the H(I) lines. This second component is hotter (T approx. equals 30,000 K), is redshifted relative to the primary component by 2-4 km/s, and has a column density too low to be detected in the Fe(II), Mg(II), and D(I) lines. We propose that the gas responsible for this component is located near the heliopause, consisting of the heated H I gas from the interstellar medium that is compressed by the solar wind. This so-called 'hydrogen wall' is predicted by recent multifluid gasdynamical models of the interstellar gas and solar wind interaction. Our data

  18. DNA methylation profiles in the human genes for tumor necrosis factors alpha and beta in subpopulations of leukocytes and in leukemias.

    PubMed Central

    Kochanek, S; Radbruch, A; Tesch, H; Renz, D; Doerfler, W

    1991-01-01

    The genomic sequencing technique has been applied to assess the state of methylation in the DNA from human leukocyte subpopulations from healthy individuals and in the DNA from several individuals with myeloid or lymphatic leukemias or non-Hodgkin lymphomas. Leukocyte populations were purified by the high-gradient magnetic cell sorting technique. In the human tumor necrosis factor alpha (TNF-alpha) gene segment between nucleotides 300 and 1150, the specific methylation profile in the DNA from human granulocytes and monocytes is maintained in three cases of myeloid leukemia. In one such case, all 5-methyl-2'-deoxycytidine residues have been replaced by cytidine. In a chronic lymphatic T-cell leukemia, all 5-methyl-2'-deoxycytidine residues have been substituted by cytidine. In normal B lymphocytes, in two cases of chronic lymphatic B-cell leukemias and two cases of non-Hodgkin lymphomas, all 5'-CG-3' sequences in this gene segment are devoid of methylation. In the TNF-beta gene, DNA methylation is decreased in several examples of acute or chronic myeloid leukemias in comparison to normal human granulocytes or monocytes, whose DNA is almost completely methylated between nucleotides 700 and 900. In human T and B lymphocytes, the main producers of TNF-beta, in three instances of chronic lymphatic leukemias and two cases of non-Hodgkin lymphomas, all 5'-CG-3' sequences are unmethylated in this region. The DNA from the human HeLa cell line is highly methylated at all 5'-CG-3' sequences in the TNF-alpha and -beta genes. The TNF-alpha gene is transcribed in the cells of one case of acute myeloid leukemia in which the analyzed region of the TNF-alpha gene is completely unmethylated. The TNF-beta gene is not transcribed in any of the malignant cells tested. Images PMID:2062856

  19. The solar O III spectrum. II - Longer wavelengths, line widths, and the He II Lyman alpha radiation field

    NASA Technical Reports Server (NTRS)

    Kastner, S. O.; Behring, W. E.; Bhatia, A. K.

    1983-01-01

    The solar O III spectrum above 900 A is analyzed, including several visible and infrared lines which are important in nebular studies. The dependence of the line intensities on the rate of photoexcitation by He Ly-alpha is determined, and the observability of these lines in the solar spectrum is studied. The impact approximation is employed to calculate the expected line widths of the stronger solar O III lines. The photoexciting field at 304 A calculated from the observed intensities of the O III lines below 900 A (Bhatia et al., 1982) is compared with the field predicted by a recent model (Avrett et al., 1976). It is shown that additional radiation trapping must be present beyond that given by this model.

  20. Recommended Isolated-Line Profile for Representing High-Resolution Spectroscoscopic Transitions

    NASA Astrophysics Data System (ADS)

    Tennyson, J.; Bernath, P. F.; Campargue, A.; Császár, A. G.; Daumont, L.; Gamache, R. R.; Hodges, J. T.; Lisak, D.; Naumenko, O. V.; Rothman, L. S.; Tran, H.; Hartmann, J.-M.; Zobov, N. F.; Buldyreva, J.; Boone, C. D.; De Vizia, M. Domenica; Gianfrani, L.; McPheat, R.; Weidmann, D.; Murray, J.; Ngo, N. H.; Polyansky, O. L.

    2014-06-01

    Recommendations of an IUPAC Task Group, formed in 2011 on "Intensities and line shapes in high-resolution spectra of water isotopologues from experiment and theory" (Project No. 2011-022-2-100), on line profiles of isolated high-resolution rotational-vibrational transitions perturbed by neutral gas-phase molecules are presented. The well-documented inadequacies of the Voigt profile, used almost universally by databases and radiative-transfer codes to represent pressure effects and Doppler broadening in isolated vibrational-rotational and pure rotational transitions of the water molecule, have resulted in the development of a variety of alternative line profile models. These models capture more of the physics of the influence of pressure on line shapes but, in general, at the price of greater complexity. The Task Group recommends that the partially-Correlated quadratic-Speed-Dependent Hard-Collision profile should be adopted as the appropriate model for high-resolution spectroscopy. For simplicity this should be called the Hartmann-Tran profile (HTP). This profile is sophisticated enough to capture the various collisional contributions to the isolated line shape, can be computed in a straightforward and rapid manner, and reduces to simpler profiles, including the Voigt profile, under certain simplifying assumptions. For further details see: J. Tennyson et al, Pure Appl. Chem., 2014, in press.

  1. [Alpha-1 Antitrypsin Affects U0126-Induced Cytotoxicity in Colon Cancer Cell Line (HCT116)].

    PubMed

    Ljujic, M; Mijatovic, S; Bulatovic, M Z; Mojic, M; Maksimovic-Ivanic, D; Radojkovic, D; Topic, A

    2016-01-01

    Alpha-1-antitrypsin (AAT), an acute phase protein, is the principal circulatory anti-protease. This multifunctional protein is encoded by the SERPINA1 gene. Although AAT was recognised as a potential tumour marker, its role in cancer biology remains unknown. Given that it has been demonstrated that AAT has an anti-apoptotic property against non-malignant cells, we aimed to investigate whether AAT affects apoptosis in a colon cancer cell line (HCT116). The presence of AAT in the HCT116 cell culture antagonized cytotoxicity of blockers of MEK1/2, PI3K/Akt pathways as well as NF-κB. The dominantly recovered cell viability was observed in the co-treatment with MEK1/2 inhibitor U0126. In addition, it was revealed that AAT almost completely abolished U0126-induced apoptosis through maintenance of the autophagy process. Our study revealed for the first time that the observed cyto-protection triggered by AAT was accompanied by sustained autophagy which opposed apoptosis. These results may contribute to understanding of the role of AAT in cancer development and evaluation of efficacy of cancer therapy. PMID:27028823

  2. Ultraviolet observations of cool stars. IV - Intensities of Lyman-alpha and Mg II in epsilon Pegasi and epsilon Eridani, and line width-luminosity correlations

    NASA Technical Reports Server (NTRS)

    Mcclintock, W.; Linsky, J. L.; Henry, R. C.; Moos, H. W.

    1975-01-01

    A spectrometer on the Copernicus satellite has been used to confirm the existence of a line width-luminosity relation for the Ly-alpha and Mg II 2800-A chromospheric emission lines in K-type stars by observation of a K2 dwarf (epsilon Eri) and a K2 supergiant (epsilon Peg). Combined with previously reported observations of lines in three K giants (alpha Boo, alpha Tau, and beta Gem), the data are consistent with an identical dependence of line width on absolute visual magnitude for the Ca II K, Ly-alpha, and Mg II 2795-A lines. Surface fluxes of Ly-alpha, Mg II 2800-A, and O V 1218-A (upper limit) for epsilon Eri, and of Mg II 2800-A for epsilon Peg are also compared with values reported previously for the three giant stars.

  3. Reconstruction of back surface profiles from scanned thermal line source data using neural networks

    NASA Astrophysics Data System (ADS)

    Winfree, William P.; Cramer, K. Elliott

    2000-05-01

    A scanned thermal line source is a rapid and efficient technique for detection of corrosion in aircraft components. Reconstruction of the back surface profile from the data obtained with this technique requires a nonlinear mapping. Neural networks are an effective method for performing nonlinear mappings of one parameter space to another. This paper discusses the application of neural networks to the reconstruction of back surface profiles from the data obtained from a thermal line scan. The neural network is found to be a very effective method of reconstructing arbitrary surface profiles. The network is trained on simulations of the thermal line scan technique. The trained network is then applied to both simulated and experimentally obtained data. The reconstructed profiles are in good agreement with independent characterizations of the profiles. Limitations of the reconstruction technique are illustrated by presenting results for several different configurations.

  4. An Analysis of Water Line Profiles in Star Formation Regions Observed by SWAS

    NASA Technical Reports Server (NTRS)

    Ashby, Matthew L. N.; Bergin, Edwin A.; Plume, Rene; Carpenter, John M.; Neufeld, David A.; Chin, Gordon; Erickson, Neal R.; Goldsmith, Paul F.; Harwit, Martin; Howe, J. E.

    2000-01-01

    We present spectral line profiles for the 557 GHz 1(sub 1,0) yields 1(sub 0,1) ground-state rotational transition of ortho-H2(16)O for 18 galactic star formation regions observed by SWAS. 2 Water is unambiguously detected in every source. The line profiles exhibit a wide variety of shapes, including single-peaked spectra and self-reversed profiles. We interpret these profiles using a Monte Carlo code to model the radiative transport. The observed variations in the line profiles can be explained by variations in the relative strengths of the bulk flow and small-scale turbulent motions within the clouds. Bulk flow (infall, outflow) must be present in some cloud cores, and in certain cases this bulk flow dominates the turbulent motions.

  5. The generalization of upper atmospheric wind and temperature based on the Voigt line shape profile.

    PubMed

    Zhang, Chunmin; He, Jian

    2006-12-25

    The principle of probing the upper atmospheric wind field, which is the Voigt profile spectral line shape, is presented for the first time. By the Fourier Transform of Voigt profile, with the Imaging Spectroscope and the Doppler effect of electromagnetic wave, the distribution and calculation formulae of the velocity field, temperature field, and pressure field of the upper atmosphere wind field are given. The probed source is the two major aurora emission lines originated from the metastable O(1S) and O(1D) at 557.7nm and 630.0nm. From computer simulation and error analysis, the Voigt profile, which is the correlation of the Gaussian profile and Lorentzian profile, is closest to the actual airglow emission lines. PMID:19532147

  6. Comparison of electron width models for fast line profile calculations

    NASA Astrophysics Data System (ADS)

    Iglesias, Carlos A.

    2016-03-01

    The first non-vanishing term in the perturbation expansion of the electron contribution to the line width, commonly used in spectral line broadening by plasmas, was previously expressed in terms of the thermally averaged bremsstrahlung Gaunt factor. The approximations in the derivation, however, suggest that the result is uncertain. The electron width formula is tested with the hydrogen Balmer series and found suspect. Calculations for the He II Lyman series also display similar difficulties. The limitation of this electron width formulation is traced to the absence of an explicit strong collision cutoff beyond which the second-order theory is invalid.

  7. The Case for General Relativistic Effects in the Fe K(alpha) Profile of an Active Galaxy

    NASA Technical Reports Server (NTRS)

    Turner, T. J.; Mushotzky, R.; Yaqoob, T.; George, I. M.; Snowden, S. L.; Netzer, H.; Kraemer, S. B.; Nandra, K.; Chelouche, D.; White, Nicholas E. (Technical Monitor)

    2002-01-01

    We present results from a simultaneous Chandra HETG (High Energy Transmission Grating) and XMM (X-ray Multi-mirror Mission)-Newton observation of NGC 3516. We find evidence for several narrow components of Fe K(alpha) along with a broad line. We consider the possibility that the lines arise in a blob of material ejected from the nucleus with velocity of approximately 0.25c. We also consider an origin in a neutral accretion disk, suffering enhanced illumination at 35 and 175 R(sub g), perhaps due to magnetic reconnection. The presence of these narrow features indicates there is no Comptonizing region along the line-of-sight to the nucleus. This in turn is compelling support for the hypothesis that broad Fe K(alpha) components are, in general, produced by strong gravity.

  8. Magnetospheric accretion models for T Tauri stars. 1: Balmer line profiles without rotation

    NASA Technical Reports Server (NTRS)

    Hartmann, Lee; Hewett, Robert; Calvet, Nuria

    1994-01-01

    We argue that the strong emission lines of T Tauri stars are generally produced in infalling envelopes. Simple models of infall constrained to a dipolar magnetic field geometry explain many peculiarities of observed line profiles that are difficult, if not impossible, to reproduce with wind models. Radiative transfer effects explain why certain lines can appear quite symmetric while other lines simultaneously exhibit inverse P Cygni profiles, without recourse to complicated velocity fields. The success of the infall models in accounting for qualitative features of observed line profiles supports the proposal that stellar magnetospheres disrupt disk accretion in T Tauri stars, that true boundary layers are not usually present in T Tauri stars, and that the observed 'blue veiling' emission arises from the base of the magnetospheric accretion column.

  9. Evaluating Possible Heating Mechanisms Using the Transition Region Line Profiles of Late-Type Stars

    NASA Technical Reports Server (NTRS)

    Wood, Brian E.; Linsky, Jeffrey L.; Ayres, Thomas R.

    1997-01-01

    Our analysis of high-resolution Goddard High-Resolution Spectrograph (GHRS) spectra of late-type stars shows that the Si IV and C IV lines formed near 10(exp 5) K can be decomposed into the sum of two Gaussians, a broad component and a narrow component. We find that the flux contribution of the broad components is correlated with both the C IV and X-ray surface fluxes. For main-sequence stars, the widths of the narrow components suggest subsonic nonthermal velocities, and there appears to be a tight correlation between these nonthermal velocities and stellar surface gravity [xi(sub nc) varies as g(sup (-.68 +/-.07))]. For evolved stars with lower surface gravities, the nonthermal velocities suggested by the narrow components are at or just above the sound speed. Nonthermal velocities computed from the widths of the broad components are always highly supersonic. We propose that the broad components are diagnostics for microflare heating. Turbulent dissipation and Alfven waves are both viable candidates for the narrow component heating mechanism. A solar analog for the broad components might be the 'explosive events' detected by the High-Resolution Telescope and Spectrograph (HRTS) experiment. The broad component we observe for the Si IV lambda 1394 line of alpha Cen A, a star that is nearly identical to the Sun, has a FWHM of 109 +/- 10 km/s and is blueshifted by 9 +/- 3 km/s relative to the narrow component. Both of these properties are consistent with the properties of the solar explosive events. However, the alpha Cen A broad component accounts for 25% +/- 4% of the total Si IV line flux, while solar explosive events are currently thought to account for no more than 5% of the Sun's total transition region emission. This discrepancy must be resolved before the connection between broad components and explosive events can be positively established. In addition to our analysis of the Si IV and C IV lines of many stars, we also provide a more thorough analysis of all

  10. WHAT DO SPECTRAL LINE PROFILE ASYMMETRIES TELL US ABOUT THE SOLAR ATMOSPHERE?

    SciTech Connect

    MartInez-Sykora, Juan; De Pontieu, Bart; Hansteen, Viggo; McIntosh, Scott W.

    2011-05-10

    Recently, analysis of solar spectra obtained with the EUV Imaging Spectrograph (EIS) onboard the Hinode satellite has revealed the ubiquitous presence of asymmetries in transition region (TR) and coronal spectral line profiles. These asymmetries have been observed especially at the footpoints of coronal loops and have been associated with strong upflows that may play a significant role in providing the corona with hot plasma. Here, we perform a detailed study of the various processes that can lead to spectral line asymmetries, using both simple forward models and state-of-the-art three-dimensional radiative MHD simulations of the solar atmosphere using the Bifrost code. We describe a novel technique to determine the presence and properties of faint secondary components in the wings of spectral line profiles. This method is based on least-squares fitting of observed so-called R(ed)B(lue) asymmetry profiles with pre-calculated RB asymmetry profiles for a wide variety of secondary component properties. We illustrate how this method could be used to perform reliable double Gaussian fits that are not over- or under-constrained. We also find that spectral line asymmetries appear in TR and coronal lines that are synthesized from our three-dimensional MHD simulations. Our models show that the spectral asymmetries are a sensitive measure of the velocity gradient with height in the TR of coronal loops. The modeled TR shows a large gradient of velocity that increases with height: this occurs as a consequence of ubiquitous, episodic heating at low heights in the model atmosphere. We show that the contribution function of spectral lines as a function of temperature is critical for sensitivity to velocity gradients and thus line asymmetries: lines that are formed over a temperature range that includes most of the TR are the most sensitive. As a result, lines from lithium-like ions (e.g., O VI) are found to be the most sensitive to line asymmetries. We compare the simulated line

  11. What do Spectral Line Profile Asymmetries Tell us About the Solar Atmosphere?

    NASA Astrophysics Data System (ADS)

    Martínez-Sykora, Juan; De Pontieu, Bart; Hansteen, Viggo; McIntosh, Scott W.

    2011-05-01

    Recently, analysis of solar spectra obtained with the EUV Imaging Spectrograph (EIS) onboard the Hinode satellite has revealed the ubiquitous presence of asymmetries in transition region (TR) and coronal spectral line profiles. These asymmetries have been observed especially at the footpoints of coronal loops and have been associated with strong upflows that may play a significant role in providing the corona with hot plasma. Here, we perform a detailed study of the various processes that can lead to spectral line asymmetries, using both simple forward models and state-of-the-art three-dimensional radiative MHD simulations of the solar atmosphere using the Bifrost code. We describe a novel technique to determine the presence and properties of faint secondary components in the wings of spectral line profiles. This method is based on least-squares fitting of observed so-called R(ed)B(lue) asymmetry profiles with pre-calculated RB asymmetry profiles for a wide variety of secondary component properties. We illustrate how this method could be used to perform reliable double Gaussian fits that are not over- or under-constrained. We also find that spectral line asymmetries appear in TR and coronal lines that are synthesized from our three-dimensional MHD simulations. Our models show that the spectral asymmetries are a sensitive measure of the velocity gradient with height in the TR of coronal loops. The modeled TR shows a large gradient of velocity that increases with height: this occurs as a consequence of ubiquitous, episodic heating at low heights in the model atmosphere. We show that the contribution function of spectral lines as a function of temperature is critical for sensitivity to velocity gradients and thus line asymmetries: lines that are formed over a temperature range that includes most of the TR are the most sensitive. As a result, lines from lithium-like ions (e.g., O VI) are found to be the most sensitive to line asymmetries. We compare the simulated line

  12. RESOLVING THE OPTICAL EMISSION LINES OF Ly{alpha} BLOB ''B1'' AT z = 2.38: ANOTHER HIDDEN QUASAR

    SciTech Connect

    Overzier, R. A.; Nesvadba, N. P. H.; Dijkstra, M.; Hatch, N. A.; Lehnert, M. D.; Villar-Martin, M.; Wilman, R. J.; Zirm, A. W.

    2013-07-10

    We have used the SINFONI near-infrared integral field unit on the Very Large Telescope to resolve the optical emission line structure of one of the brightest (L{sub Ly{alpha}} Almost-Equal-To 10{sup 44} erg s{sup -1}) and nearest (z Almost-Equal-To 2.38) of all Ly{alpha} blobs (LABs). The target, known in the literature as object {sup B}1{sup ,} lies at a redshift where the main optical emission lines are accessible in the observed near-infrared. We detect luminous [O III] {lambda}{lambda}4959, 5007 and H{alpha} emission with a spatial extent of at least 32 Multiplication-Sign 40 kpc (4'' Multiplication-Sign 5''). The dominant optical emission line component shows relatively broad lines (600-800 km s{sup -1}, FWHM) and line ratios consistent with active galactic nucleus (AGN) photoionization. The new evidence for AGN photoionization, combined with previously detected C IV and luminous, warm infrared emission, suggest that B1 is the site of a hidden quasar. This is confirmed by the fact that [O II] is relatively weak compared with [O III] (extinction-corrected [O III]/[O II] of about 3.8), which is indicative of a high, Seyfert-like ionization parameter. From the extinction-corrected [O III] luminosity we infer a bolometric AGN luminosity of {approx}3 Multiplication-Sign 10{sup 46} erg s{sup -1}, and further conclude that the obscured AGN may be Compton-thick given existing X-ray limits. The large line widths observed are consistent with clouds moving within the narrow-line region of a luminous QSO. The AGN scenario is capable of producing sufficient ionizing photons to power the Ly{alpha}, even in the presence of dust. By performing a census of similar objects in the literature, we find that virtually all luminous LABs harbor obscured quasars. Based on simple duty-cycle arguments, we conclude that AGNs are the main drivers of the Ly{alpha} in LABs rather than the gravitational heating and subsequent cooling suggested by cold stream models. We also conclude that the

  13. Measurement of Plasma Ion Temperature and Flow Velocity from Chord-Averaged Emission Line Profile

    NASA Astrophysics Data System (ADS)

    Wei, Xu

    2011-06-01

    The distinction between Doppler broadening and Doppler shift has been analysed, the differences between Gaussian fitting and the distribution of chord-integral line shape have also been discussed. Local ion temperature and flow velocity have been derived from the chord-averaged emission line profile by a chosen-point Gaussian fitting technique.

  14. The comparison of two speed-dependent Voigt line profile models

    NASA Astrophysics Data System (ADS)

    Protasevich, A. E.

    2013-07-01

    Numerical calculations of the ratio of line width and maximum value of two speed-dependent Voigt line profiles to the respective values of their speed-independent analogs are performed in the high-pressure limit. The intercomparison demonstrates considerable disagreement between different speed-dependent models.

  15. Microbial Community Profile of a Lead Service Line Removed from a Drinking Water Distribution System▿

    PubMed Central

    White, Colin; Tancos, Matthew; Lytle, Darren A.

    2011-01-01

    A corroded lead service line was removed from a drinking water distribution system, and the microbial community was profiled using 16S rRNA gene techniques. This is the first report of the characterization of a biofilm on the surface of a corroded lead drinking water service line. The majority of phylotypes have been linked to heavy-metal-contaminated environments. PMID:21652741

  16. Impact of dislocation cell elastic strain variations on line profiles from deformed copper.

    SciTech Connect

    Levine, L. E.; Larson, B. C.; Tischler, J. Z.; Geantil, P.; Kassner, M. E.; Liu, W.; Stoudt, M. R.; NIST; ORNL; Univ. of Southern California

    2008-01-01

    Energy scanned, sub-micrometer X-ray beams were used to obtain diffraction line profiles from individual dislocation cells in copper single crystals deformed in compression. Sub-micrometer depth resolution was provided by translating a wire through the diffracted beams and using triangulation to determine the depths of the diffracting volumes. Connection to classic volume-averaged results was made by adding the line profiles from 52 spatially resolved dislocation cell measurements. The resulting sub profile is smooth and symmetric, in agreement with early assumptions; the mean strain and full width half maximum are consistent with the average of the parameters extracted from the more exact individual dislocation cell measurements.

  17. Line Profiles of Cores within Clusters. I. The Anatomy of a Filament

    NASA Astrophysics Data System (ADS)

    Smith, Rowan J.; Shetty, Rahul; Stutz, Amelia M.; Klessen, Ralf S.

    2012-05-01

    Observations are revealing the ubiquity of filamentary structures in molecular clouds. As cores are often embedded in filaments, it is important to understand how line profiles from such systems differ from those of isolated cores. We perform radiative transfer calculations on a hydrodynamic simulation of a molecular cloud in order to model line emission from collapsing cores embedded in filaments. We model two optically thick lines, CS(2-1) and HCN(1-0), and one optically thin line, N2H+(1-0), from three embedded cores. In the hydrodynamic simulation, gas self-gravity, turbulence, and bulk flows create filamentary regions within which cores form. Though the filaments have large dispersions, the N2H+(1-0) lines indicate subsonic velocities within the cores. We find that the observed optically thick line profiles of CS(2-1) and HCN(1-0) vary drastically with viewing angle. In over 50% of viewing angles, there is no sign of a blue asymmetry, an idealized signature of infall motions in an isolated spherical collapsing core. Profiles that primarily trace the cores, with little contribution from the surrounding filament, are characterized by a systematically higher HCN(1-0) peak intensity. The N2H+(1-0) lines do not follow this trend. We demonstrate that red asymmetric profiles are also feasible in the optically thick lines, due to emission from the filament or one-sided accretion flows onto the core. We conclude that embedded cores may frequently undergo collapse without showing a blue asymmetric profile, and that observational surveys including filamentary regions may underestimate the number of collapsing cores if based solely on profile shapes of optically thick lines.

  18. LINE PROFILES OF CORES WITHIN CLUSTERS. I. THE ANATOMY OF A FILAMENT

    SciTech Connect

    Smith, Rowan J.; Shetty, Rahul; Klessen, Ralf S.; Stutz, Amelia M.

    2012-05-01

    Observations are revealing the ubiquity of filamentary structures in molecular clouds. As cores are often embedded in filaments, it is important to understand how line profiles from such systems differ from those of isolated cores. We perform radiative transfer calculations on a hydrodynamic simulation of a molecular cloud in order to model line emission from collapsing cores embedded in filaments. We model two optically thick lines, CS(2-1) and HCN(1-0), and one optically thin line, N{sub 2}H{sup +}(1-0), from three embedded cores. In the hydrodynamic simulation, gas self-gravity, turbulence, and bulk flows create filamentary regions within which cores form. Though the filaments have large dispersions, the N{sub 2}H{sup +}(1-0) lines indicate subsonic velocities within the cores. We find that the observed optically thick line profiles of CS(2-1) and HCN(1-0) vary drastically with viewing angle. In over 50% of viewing angles, there is no sign of a blue asymmetry, an idealized signature of infall motions in an isolated spherical collapsing core. Profiles that primarily trace the cores, with little contribution from the surrounding filament, are characterized by a systematically higher HCN(1-0) peak intensity. The N{sub 2}H{sup +}(1-0) lines do not follow this trend. We demonstrate that red asymmetric profiles are also feasible in the optically thick lines, due to emission from the filament or one-sided accretion flows onto the core. We conclude that embedded cores may frequently undergo collapse without showing a blue asymmetric profile, and that observational surveys including filamentary regions may underestimate the number of collapsing cores if based solely on profile shapes of optically thick lines.

  19. Cell line profiling to improve monoclonal antibody production.

    PubMed

    Kang, Sohye; Ren, Da; Xiao, Gang; Daris, Kristi; Buck, Lynette; Enyenihi, Atim A; Zubarev, Roman; Bondarenko, Pavel V; Deshpande, Rohini

    2014-04-01

    Mammalian cell culture performance is influenced by both intrinsic (genetic) and extrinsic (media and process) factors. In this study, intrinsic capacity of various monoclonal antibody-producing Chinese Hamster Ovary (CHO) cell lines was compared by exposing them to the same culture condition. Microarray-based transcriptomics and LC-MS/MS shotgun proteomics technologies were utilized to obtain expression landscape of different cell lines. Specific transcripts and proteins correlating with productivity, growth rate and cell size have been identified. The proteomics analysis results showed a strong correlation between the intracellular protein expression levels of the recombinant DHFR and productivity. In contrast, neither the light chain nor the heavy chain of the recombinant monoclonal antibody showed correlation to productivity. Other top ranked proteins which demonstrated positive correlation to productivity included the adaptor protein complex subunits AP3D1and AP2B2, DNA repair protein DDB1 and the ER translocation complex component, SRPR. The subunits of molecular chaperone T-complex protein 1 and the regulator of mitochondrial one-carbon metabolism MTHFD2 showed negative correlation to productivity. The transcriptomics analysis has identified the regulators of calcium signaling, Tmem20 and Rcan1, as the top ranked genes displaying positive and negative correlation to productivity, respectively. For the second part of the study, the principal component analysis (PCA) was generated to view the underlying global structure of the expression data. A clear division and expression polarity was observed between the two distinct clusters of cell lines, independent of link to productivity or any other traits examined. The primary component of the PCA generated from either transcriptomics or proteomics data displayed a strong correlation to cell size and doubling time, while none of the main principal components showed correlation to productivity. Our findings suggest

  20. miRNA expression profiling of Epstein-Barr virus-associated NKTL cell lines by Illumina deep sequencing.

    PubMed

    Alles, Julia; Menegatti, Jennifer; Motsch, Natalie; Hart, Martin; Eichner, Norbert; Reinhardt, Richard; Meister, Gunter; Grässer, Friedrich A

    2016-04-01

    The aim of this work was to establish the microRNA profile of SNK6 and SNT16, two Epstein-Barr virus (EBV)-infected cell lines derived from nasal NK/T-cell lymphoma (NKTL). The oncogenic EBV is strongly associated with the pathogenesis of nasal and extranodal NK/T-cell lymphoma and expresses 44 mature microRNAs and two noncoding EBV-encoded RNAs (EBERs). miRNAs are 19-25nt noncoding RNAs that affect host and viral gene expression post-transcriptionally. Deregulated miRNA patterns are frequently linked to a variety of human cancers including lymphomas. miRNA profiling of the two NK/T cell lines vs. primary cells revealed 10 and 4 up-regulated and 10 and 12 down-regulated miRNAs in SNK6 and SNT16 cells respectively. The results were validated by qRT-PCR for selected miRNAs. Target gene analyses confirmed cullin 5 (CUL5) and sphingosin-1-phosphate receptor 1 (S1PR1) as targets for the down-regulated hsa-miR-148a and viral ebv-miR-BART16 respectively. As recently demonstrated for the regulation of IL1-alpha by miR-142-3p, coexpression of the EBERs selectively exerted corepression of S1PR1 by BART16 but not of CUL5 by miR-148a, indicating selective corepression by the EBERs. PMID:27239439

  1. Line Profile Measurements of Atomic Oxygen at 1300 A with a VUV Raman Shifter

    NASA Technical Reports Server (NTRS)

    Sharma, Surendra P.; Exberger, Richard J.; Meyer, Scott A.; Gilmore, John O.

    1994-01-01

    We are currently developing an atomic oxygen diagnostic to study the degree of oxygen dissociation in ground-based facilities. The absorption of the (sub 3)P - (sup 3)S(sup 0) resonance triplet in the vacuum ultraviolet is a direct measure of the ground state number density of atomic oxygen. Although the integrated line strength is well known for these transitions, the line profile is not. We report the results of a series of experiments in which the line profile is measured in shock-heated oxygen. An ArF excimer laser and a hydrogen Raman shifter generate tunable VUV radiation at the resonance wavelength. The test gas is dissociated oxygen, generated in the Electric Arc Shock Tube (EAST) Facility at NASA-Ames Research Center. By measuring the absorption of known concentrations of atomic oxygen, we are able to study the absorption line profile. The results will serve as a calibration to apply this diagnostic in other flowfields.

  2. Fiber Optic Picosecond Laser Pulse Transmission Line for Hydrogen Ion Beam Profile Measurement

    SciTech Connect

    Liu, Yun; Huang, Chunning; Aleksandrov, Alexander V

    2013-01-01

    We present a fiber optic laser pulse transmission line for non-intrusive longitudinal profile measurement of the hydrogen ion (H-) beam at the front-end of the Spallation Neutron Source (SNS) accelerator. The 80.5 MHz, 2.5 ps, multi-killowatt optical pulses are delivered to the accelerator beam line through a large mode area polarization maintaining optical fiber to ensure a high measurement stability. The transmission efficiency, output laser beam quality, pulse jitter and pulse width broadening over a 100-ft fiber line are experimentally investigated. A successful measurement of the H- beam microbunch (~130 ps) profile is obtained. Our experiment is the first demonstration of particle beam profile diagnostics using fiber optic laser pulse transmission line.

  3. Variability of Hell and hydrogen line profiles in the spectrum of HD 93521

    NASA Astrophysics Data System (ADS)

    Rzaev, A. Kh.; Panchuk, V. E.

    2008-03-01

    We have studied the variability of the Hell λλ 4686 and 5411 Å H β, and H α lines in the spectrum of the pulsating star HD 93521. All these line profiles display the same variability pattern relative to the average profiles: a sinusoidal wave that moves systematically from the short-to the long-wavelength wing of the profile. This variability is due to non-radial pulsations. To study the pulsation movements and stratification of the radial velocity in the atmosphere of HD 93521, we analyzed the variability of the radial velocities measured individually for the blue and red halves of the absorption profile at the half-level of the line intensity. The periods and amplitudes of this radial-velocity variability are different for different lines and are well correlated with their central depths. In the transition from weak to strong lines (i.e., from lower to upper layers of the atmosphere), the period of the radial-velocity variations measured using both halves of the absorption profile increases, while its amplitude decreases. When the morphology and variability of photospheric and wind-driven lines are compared, it is clear that the variability of their absorption components is due to the same process—non-radial pulsations. In this way, the non-radial pulsations partly affect the variability of the stellar wind. The effect of the stellar wind on the profiles of strong lines is observed as a variable absorption feature that moves along the profiles synchronous with the axial rotation of the star.

  4. Alpha2-adrenoreceptors profile modulation. 4. From antagonist to agonist behavior.

    PubMed

    Gentili, Francesco; Cardinaletti, Claudia; Vesprini, Cristian; Carrieri, Antonio; Ghelfi, Francesca; Farande, Aniket; Giannella, Mario; Piergentili, Alessandro; Quaglia, Wilma; Laurila, Jonne M; Huhtinen, Anna; Scheinin, Mika; Pigini, Maria

    2008-07-24

    The goal of the present study was to modulate the receptor interaction properties of known alpha 2-adrenoreceptor (AR) antagonists to obtain novel alpha 2-AR agonists with desirable subtype selectivity. Therefore, a phenyl group or one of its bioisosteres or aliphatic moieties with similar steric hindrance were introduced into the aromatic ring of the antagonist lead basic structure. The functional properties of the novel compounds allowed our previous observations to be confirmed. The high efficacy of 7, 12, and 13 as alpha 2-AR agonists and the significant alpha 2C-AR subtype selective activation displayed by 11 and 15 demonstrated that favorable interactions to induce alpha 2-AR activation were formed between the pendant groups of the ligands and the aromatic cluster present in transmembrane domain 6 of the binding site cavity of the receptors. PMID:18578476

  5. Gene expression profiling analysis of osteosarcoma cell lines

    PubMed Central

    SUN, LU; LI, JIE; YAN, BING

    2015-01-01

    Osteosarcoma (OS) is the most common type of primary bone malignancy and has a poor prognosis. To investigate the mechanisms of osteosarcoma, the present analyzed the GSE28424 microarray. GSE28424 was downloaded from the Gene Expression Omnibus, and included a collective of 19 OS cell lines and four normal bone cell lines, which were used as controls. Subsequently, the differentially expressed genes (DEGs) were screened using the Limma package in Bioconductor. Gene Ontology (GO) and pathway enrichment analysis of the DEGs was performed using the Database for Annotation, Visualization and Integrated Discovery, interactions between the proteins encoded by the DEGs were identified using STRING, and the protein-protein interaction (PPI) network was visualized using Cytoscape. In addition, modular analysis of the PPI network was performed using the Clique Percolation Method (CPM) in CFinder. A total of 1,170 DEGs were screened, including 530 upreguated and 640 downregulated genes. The enriched functions included organelle fission, immune response and response to wounding. In addition, RPL8 was observed to be involved with the ribosomal pathway in module A of the PPI network of the DEGs. PLCG1, SYK and PLCG2 were also involved in the B-cell receptor signaling pathway in module B and the Fc-epsilon RI signaling pathway in module C. In addition, AURKA (degree=39), MAD2L1 (degree=38), CDCA8 (degree=38), BUB1 (degree=37) and MELK (degree=37) exhibited higher degrees of connectivity in module F. The results of the present study suggested that the RPL8, PLCG1, PLCG2, SYK, MAD2L1, AURKA, CDCA8, BUB1 and MELK genes may be involved in OS. PMID:26096802

  6. Gene expression profiling analysis of osteosarcoma cell lines.

    PubMed

    Sun, Lu; Li, Jie; Yan, Bing

    2015-09-01

    Osteosarcoma (OS) is the most common type of primary bone malignancy and has a poor prognosis. To investigate the mechanisms of osteosarcoma, the present analyzed the GSE28424 microarray. GSE28424 was downloaded from the Gene Expression Omnibus, and included a collective of 19 OS cell lines and four normal bone cell lines, which were used as controls. Subsequently, the differentially expressed genes (DEGs) were screened using the Limma package in Bioconductor. Gene Ontology (GO) and pathway enrichment analysis of the DEGs was performed using the Database for Annotation, Visualization and Integrated Discovery, interactions between the proteins encoded by the DEGs were identified using STRING, and the protein‑protein interaction (PPI) network was visualized using Cytoscape. In addition, modular analysis of the PPI network was performed using the Clique Percolation Method (CPM) in CFinder. A total of 1,170 DEGs were screened, including 530 upreguated and 640 downregulated genes. The enriched functions included organelle fission, immune response and response to wounding. In addition, RPL8 was observed to be involved with the ribosomal pathway in module A of the PPI network of the DEGs. PLCG1, SYK and PLCG2 were also involved in the B‑cell receptor signaling pathway in module B and the Fc‑epsilon RI signaling pathway in module C. In addition, AURKA (degree=39), MAD2L1 (degree=38), CDCA8 (degree=38), BUB1 (degree=37) and MELK (degree=37) exhibited higher degrees of connectivity in module F. The results of the present study suggested that the RPL8, PLCG1, PLCG2, SYK, MAD2L1, AURKA, CDCA8, BUB1 and MELK genes may be involved in OS. PMID:26096802

  7. Experimental phase determination of the structure factor from Kossel line profile

    PubMed Central

    Faigel, G.; Bortel, G.; Tegze, M.

    2016-01-01

    Kossel lines are formed when radiation from point x-ray sources inside a single crystal are diffracted by the crystal itself. In principle, Kossel line patterns contain full information on the crystalline structure: phase and magnitude of the structure factors. The phase is coded into the profile of the lines. Although this was known for a long time, experimental realization has not been presented. In this work we demonstrate experimentally that phases can be directly determined from the profile of the Kossel lines. These measurements are interesting not only theoretically, but they would facilitate structure solution of samples within extreme conditions, such as high pressure, high and low temperatures, high magnetic fields and extremely short times. The parallel measurement of many diffraction lines on a stationary sample will allow a more efficient use of the new generation of x-ray sources the X-ray free electron lasers (XFELs). PMID:26965321

  8. Experimental phase determination of the structure factor from Kossel line profile.

    PubMed

    Faigel, G; Bortel, G; Tegze, M

    2016-01-01

    Kossel lines are formed when radiation from point x-ray sources inside a single crystal are diffracted by the crystal itself. In principle, Kossel line patterns contain full information on the crystalline structure: phase and magnitude of the structure factors. The phase is coded into the profile of the lines. Although this was known for a long time, experimental realization has not been presented. In this work we demonstrate experimentally that phases can be directly determined from the profile of the Kossel lines. These measurements are interesting not only theoretically, but they would facilitate structure solution of samples within extreme conditions, such as high pressure, high and low temperatures, high magnetic fields and extremely short times. The parallel measurement of many diffraction lines on a stationary sample will allow a more efficient use of the new generation of x-ray sources the X-ray free electron lasers (XFELs). PMID:26965321

  9. An alpha-fetoprotein-producing human gallbladder carcinoma cell line (KMG-C) shows more aggressive biologic behavior than an alpha-fetoprotein-non-producing cell line.

    PubMed

    Maruiwa, M; Yano, H; Fukuda, K; Ogasawara, S; Hisaka, T; Yamaguchi, R; Kojiro, M

    1996-06-01

    We have established a new human alphafetoprotein (AFP)-producing gallbladder carcinoma (GBC) cell line, termed KMG-C, from a 67-year-old Japanese male. KMG-C and its reconstituted tumors in nude mice showed the morphological features of an adenocarcinoma. Functionally, KMG-C secreted AFP, carcinoembryonic antigen, and carbohydrate antigen 19-9, as well as 7 serum proteins, including albumin and C-reactive protein. KMG-C showed more malignant biological behavior than an AFP-nonproducing GBC cell line, KMG-A, established originally from the tumor of the same patient; KMG-C had a shorter doubling time, higher tumorigenicity, and an aneuploid DNA index. Our results suggest that AFP-producing GBC cells may have more malignant biological characteristics than AFP-non-producing GBC cells in GBCs having both of these components. PMID:21544480

  10. Line profile studies of hydrodynamical models of cometary compact H II regions

    NASA Astrophysics Data System (ADS)

    Zhu, Feng-Yao; Zhu, Qing-Feng

    2015-06-01

    We simulate the evolution of cometary H II regions based on several champagne flow models and bow shock models, and calculate the profiles of the [Ne II] fine-structure line at 12.81 μm, the H30α recombination line and the [Ne III] fine-structure line at 15.55 μm for these models at different inclinations of 0°, 30° and 60°. We find that the profiles in the bow shock models are generally different from those in the champagne flow models, but the profiles in the bow shock models with lower stellar velocity (≤ 5 km s-1) are similar to those in the champagne flow models. In champagne flow models, both the velocity of peak flux and the flux weighted central velocities of all three lines point outward from molecular clouds. In bow shock models, the directions of these velocities depend on the speed of stars. The central velocities of these lines are consistent with the stellar motion in the high stellar speed cases, but they are opposite directions from the stellar motion in the low speed cases. We notice that the line profiles from the slit along the symmetrical axis of the projected 2D image of these models are useful for distinguishing bow shock models from champagne flow models. It is also confirmed by the calculation that the flux weighted central velocity and the line luminosity of the [Ne III] line can be estimated from the [Ne II] line and the H30α line.

  11. THE SCATTERING POLARIZATION OF THE Ly{alpha} LINES OF H I AND He II TAKING INTO ACCOUNT PARTIAL FREQUENCY REDISTRIBUTION AND J-STATE INTERFERENCE EFFECTS

    SciTech Connect

    Belluzzi, Luca; Trujillo Bueno, Javier; Stepan, Jiri

    2012-08-10

    Recent theoretical investigations have pointed out that the cores of the Ly{alpha} lines of H I and He II should show measurable scattering polarization signals when observing the solar disk, and that the magnetic sensitivity, through the Hanle effect, of such linear polarization signals is suitable for exploring the magnetism of the solar transition region. Such investigations were carried out in the limit of complete frequency redistribution (CRD) and neglecting quantum interference between the two upper J-levels of each line. Here we relax both approximations and show that the joint action of partial frequency redistribution and J-state interference produces much more complex fractional linear polarization (Q/I) profiles, with large amplitudes in their wings. Such wing polarization signals turn out to be very sensitive to the temperature structure of the atmospheric model, so that they can be exploited for constraining the thermal properties of the solar chromosphere. Finally, we show that the approximation of CRD without J-state interference is however suitable for estimating the amplitude of the linear polarization signals in the core of the lines, where the Hanle effect operates.

  12. Automated decomposition algorithm for Raman spectra based on a Voigt line profile model.

    PubMed

    Chen, Yunliang; Dai, Liankui

    2016-05-20

    Raman spectra measured by spectrometers usually suffer from band overlap and random noise. In this paper, an automated decomposition algorithm based on a Voigt line profile model for Raman spectra is proposed to solve this problem. To decompose a measured Raman spectrum, a Voigt line profile model is introduced to parameterize the measured spectrum, and a Gaussian function is used as the instrumental broadening function. Hence, the issue of spectral decomposition is transformed into a multiparameter optimization problem of the Voigt line profile model parameters. The algorithm can eliminate instrumental broadening, obtain a recovered Raman spectrum, resolve overlapping bands, and suppress random noise simultaneously. Moreover, the recovered spectrum can be decomposed to a group of Lorentzian functions. Experimental results on simulated Raman spectra show that the performance of this algorithm is much better than a commonly used blind deconvolution method. The algorithm has also been tested on the industrial Raman spectra of ortho-xylene and proved to be effective. PMID:27411136

  13. New observations with the HST Goddard High Resolution Spectrograph of the low-redshift Lyman-Alpha clouds in the 3C 273 line of sight

    NASA Technical Reports Server (NTRS)

    Weymann, Ray; Rauch, Michael; Williams, Robert; Morris, Simon; Heap, Sally

    1995-01-01

    We presenty spectra of 3C 273 between 1216 and 1250 A obtained in the (pre-COSTAR (Corrective Optics Space Telescope Axial Replacement instrument)) configuration of the Goddard High Resolution Spectrograph (GHRS) taken with the G160M grating with a resolution approximately = 20 km/s. The two strong Ly alpha lines at velocities of approximately 1000 and approximately 1600 km/s are well fitted with Voigt profiles and yield column densities, Doppler parameters and redshifts of log N(H I)=14.19 +/- 0.04 V(sub Dop)=40.7 +/- 3.0 km/s, V = 1012.4 +/- 2.0 km/s, and log N(H I)=14.22 +/- 0.07, V(sub Dop)=34.2 +/- 3.3 km/s and V = 1582.0 +/- 2.0 km/s, respectively. Motivated by the initial announcement by Williams and Schommer of detectable H alpha emission associated with the approximately 1600 km/s cloud, we discuss the difficulty of finding models which can account for emission of that magnitude given the observed neutral hydrogen column density, though a recent reobservation by these authors has shown the initial detection to be spurious. The C/H abundance ratio is probably less than about one-fourth of the solar abundance in these clouds, although this result is very uncertain and model dependent.

  14. Does the Iron K and Alpha: Line of Active Galactic Nuclei Arise from the Cerenkov Line-like Radiation?

    NASA Technical Reports Server (NTRS)

    You, J. H.; Liu, D. B.; Chen, W. P.; Chen, L.; Zhang, S. N.

    2003-01-01

    When thermal relativistic electrons with isotropic distribution of velocities move in a gas region or impinge upon the surface of a cloud that consists of a dense gas or doped dusts, the Cerenkov effect produces peculiar atomic or ionic emission lines, which is known as the Cerenkov line - like radiation. This newly recognized emission mechanism may find wide applications in high-energy astrophysics. In this paper we tentatively adopt this new line emission mechanism to discuss the origin of the iron Kα feature of active galactic nuclei (AGNs). The motivation of this research is to attempt a solution to a problem encountered by the "disk fluorescence line" model, i.e. , the lack of temporal response of the observed iron Kα line flux to the changes of the X-ray continuum flux. If the Cerenkov line emission is indeed responsible significant ly for the iron Kα feature, the conventional scenario around the central supermassive black holes of AGNs would need to be modified to accomodate more energetic, more violent, and much denser environments than previously thought.

  15. X-RAY EMISSION LINE PROFILES FROM WIND CLUMP BOW SHOCKS IN MASSIVE STARS

    SciTech Connect

    Ignace, R.; Waldron, W. L.; Cassinelli, J. P.; Burke, A. E. E-mail: wwaldron@satx.rr.com E-mail: burke.alexander@gmail.com

    2012-05-01

    The consequences of structured flows continue to be a pressing topic in relating spectral data to physical processes occurring in massive star winds. In a preceding paper, our group reported on hydrodynamic simulations of hypersonic flow past a rigid spherical clump to explore the structure of bow shocks that can form around wind clumps. Here we report on profiles of emission lines that arise from such bow shock morphologies. To compute emission line profiles, we adopt a two-component flow structure of wind and clumps using two 'beta' velocity laws. While individual bow shocks tend to generate double-horned emission line profiles, a group of bow shocks can lead to line profiles with a range of shapes with blueshifted peak emission that depends on the degree of X-ray photoabsorption by the interclump wind medium, the number of clump structures in the flow, and the radial distribution of the clumps. Using the two beta law prescription, the theoretical emission measure and temperature distribution throughout the wind can be derived. The emission measure tends to be power law, and the temperature distribution is broad in terms of wind velocity. Although restricted to the case of adiabatic cooling, our models highlight the influence of bow shock effects for hot plasma temperature and emission measure distributions in stellar winds and their impact on X-ray line profile shapes. Previous models have focused on geometrical considerations of the clumps and their distribution in the wind. Our results represent the first time that the temperature distribution of wind clump structures are explicitly and self-consistently accounted for in modeling X-ray line profile shapes for massive stars.

  16. Line profile variation in delta-Orionis A, l-Orionis A, and 15 Monocerotis

    NASA Technical Reports Server (NTRS)

    Grady, C. A.; Snow, T. P.; Cash, W. C.

    1984-01-01

    The results of a monitoring program with IUE and Einstein are presented for three stars, delta-Ori A, l-Ori A, and 15 Mon. Line profile variability is observed in the UV profiles accessible to IUE and the relation between the variation in the different ions suggests that the ionization level is varying in the winds of these stars. This is consistent with Einstein observations of soft X-ray variability for two of the stars.

  17. Lyman-alpha line as a solar activity index for calculations of solar spectrum in the EUV region

    NASA Astrophysics Data System (ADS)

    Nusinov, Anatoliy; Kazachevskaya, Tamara; Katyushina, Valeria; Woods, Thomas

    It is investigated a possibility of retrieval of solar spectrum data using intensity observational data of the only solar spectral line L (Hydrogen Lyman-alpha, 121.6 nm).Using as an example spectra obtained by SEE instruments on TIMED satellite, it was shown, that both for lines and for continuum in the spectral range 27-105 nm, which is essential for ionization processes in the ionosphere, a correlation between their intensities and L was high. Therefore it becomes possible to use L measurements data as a natural solar activity index for calculations of EUV solar emission spectrum for solving aeronomical problems. It is noticed, that EUV model, obtained with using SEE data, does not allow to calculate correctly critical frequencies of ionospheric E-layer owing to low intensities of lines 97.7 and 102.6 nm, which produce the main part of ionization in ionospheric E-region.

  18. ON POSSIBLE VARIATIONS OF BASAL Ca II K CHROMOSPHERIC LINE PROFILES WITH THE SOLAR CYCLE

    SciTech Connect

    Pevtsov, Alexei A.; Uitenbroek, Han; Bertello, Luca E-mail: huitenbroek@nso.edu

    2013-04-10

    We use daily observations of the Ca II K line profiles of the Sun-as-a-star taken with the Integrated Sunlight Spectrometer from 2006 December through 2011 July to deconvolve the contributions from the quiet (basal) chromosphere and with magnetic network/plage areas. The 0.5 A emission index computed from basal profiles shows a significantly reduced modulation (as compared with one derived from the observed profiles) corresponding to the Sun's rotation. For basal contribution of the Ca II K line, the peak in power spectrum corresponding to solar rotation is broad and not well defined. Power spectra for the plage contribution show two narrow well-defined peaks corresponding to solar rotation at two distinct latitudes, in agreement with the latitudinal distribution of activity on the Sun at the end of Cycle 23 and beginning of Cycle 24. We use the lack of a signature of solar rotation in the basal (quiet Sun) component as an indication of a successful removal of the active Sun (plage) component. Even though the contribution from solar activity is removed from the basal line profiles, we find a weak dependency of intensity in the line core (K3) of basal profiles with the phase of the solar cycle. Such dependency could be the result of changes in thermal properties of basal chromosphere with the solar cycle. As an alternative explanation, we also discuss a possibility that the basal component does not change with the phase of the solar cycle.

  19. Experimental measurements of selenium x-ray laser spectral line profiles

    SciTech Connect

    Koch, J.A.; MacGowan, B.J.; Da Silva, L.B.; Matthews, D.L.; London, R.A.; Lee, R.W.; Mrowka, S.; Underwood, J.H.; Batson, P.J.

    1993-03-01

    The authors discuss their recent measurements of the spectral width of the 206.38 {Angstrom} x-ray laser transition in Ne-like Se. These measurements used a high-resolution grating spectrometer and were performed over a wide range of laser amplifier lengths. The data have enabled them to extrapolate the intrinsic line width and to observe the effects of gain-narrowing and saturation on the line profile. They find an intrinsic width which is 1.4 times the Doppler width, they observe gain-narrowing in intermediate length amplifiers, and they observe no re-broadening in long, saturated amplifiers. These results suggest that collisional line-broadening has a significant effect on the line profile and saturation behavior of this laser.

  20. Non-LTE modelling of prominence fine structures using hydrogen Lyman-line profiles

    NASA Astrophysics Data System (ADS)

    Schwartz, P.; Gunár, S.; Curdt, W.

    2015-05-01

    Aims: We perform a detailed statistical analysis of the spectral Lyman-line observations of the quiescent prominence observed on May 18, 2005. Methods: We used a profile-to-profile comparison of the synthetic Lyman spectra obtained by 2D single-thread prominence fine-structure model as a starting point for a full statistical analysis of the observed Lyman spectra. We employed 2D multi-thread fine-structure models with random positions and line-of-sight velocities of each thread to obtain a statistically significant set of synthetic Lyman-line profiles. We used for the first time multi-thread models composed of non-identical threads and viewed at line-of-sight angles different from perpendicular to the magnetic field. Results: We investigated the plasma properties of the prominence observed with the SoHO/SUMER spectrograph on May 18, 2005 by comparing the histograms of three statistical parameters characterizing the properties of the synthetic and observed line profiles. In this way, the integrated intensity, Lyman decrement ratio, and the ratio of intensity at the central reversal to the average intensity of peaks provided insight into the column mass and the central temperature of the prominence fine structures.

  1. Energetic ion, atom, and molecule reactions and excitation in low-current H2 discharges: H(alpha) Doppler profiles.

    PubMed

    Petrović, Z Lj; Phelps, A V

    2009-12-01

    Absolute spectral emissivities for Doppler broadened H(alpha) profiles are measured and compared with predictions of energetic hydrogen ion, atom, and molecule behavior in low-current electrical discharges in H2 at very high electric field E to gas density N ratios E/N and low values of Nd , where d is the parallel-plate electrode separation. These observations reflect the energy and angular distributions for the excited atoms and quantitatively test features of multiple-scattering kinetic models in weakly ionized hydrogen in the presence of an electric field that are not tested by the spatial distributions of H(alpha) emission. Absolute spectral intensities agree well with predictions. Asymmetries in Doppler profiles observed parallel to the electric field at 4profiles are consistent with models of reactions among H+, H2+, H3 , H, and H2 leading to fast H atoms and then fast excited H(n=3) atoms. PMID:20365280

  2. HIF-1alpha Expression Profile in Intratumoral and Peritumoral Inflammatory Cells as a Prognostic Marker for Squamous Cell Carcinoma of the Oral Cavity

    PubMed Central

    Mendes, Suzanny Oliveira; dos Santos, Marcelo; Peterle, Gabriela Tonini; Maia, Lucas de Lima; Stur, Elaine; Agostini, Lidiane Pignaton; de Carvalho, Marcos Brasilino; Tajara, Eloiza Helena; Louro, Iúri Drumond; Trivilin, Leonardo Oliveira; da Silva-Conforti, Adriana Madeira Álvares

    2014-01-01

    The HIF-1 transcriptional complex is responsible for controlling transcription of over 100 genes involved in cell hypoxia response. HIF-1alpha subunit is stabilized in hypoxia conditions, creating the HIF-1 nuclear transcription factor. In inflammatory cells, high HIF-1alpha expression induces lymphocytic immunosuppression, decreasing tumoral antigen recognition, which promotes tumor growth. The present work investigated the relationship between HIF-1alpha expression in lymphocytes populating the intratumoral and peritumoral region of 56 patients with oral cancer. Our data indicates a prognostic value for this expression. High HIF-1alpha expression in peritumoral inflammatory cells is significantly related to worse patient outcome, whereas high expression in the intratumoral lymphoid cells correlates with a better prognosis. A risk profile indicating the chance of disease relapse and death was designed based on HIF-1alpha expression in tumoral inflammatory cells, defining low, intermediate and high risks. This risk profile was able to determine that high HIF-1alpha expression in peritumoral cells correlates with worse prognosis, independently of intratumoral expression. Low HIF-1alpha in tumor margins and high expression in the tumor was considered a low risk profile, showing no cases of disease relapse and disease related death. Intermediate risk was associated with low expression in tumor and tumor margins. Our results suggest that HIF-1alpha expression in tumor and peritumoral inflammatory cells may play an important role as prognostic tumor marker. PMID:24416312

  3. Strong Field Effects on Emission Line Profiles: Kerr Black Holes and Warped Accretion Disks

    NASA Astrophysics Data System (ADS)

    Wang, Yan; Li, Xiang-Dong

    2012-01-01

    If an accretion disk around a black hole is illuminated by hard X-rays from non-thermal coronae, fluorescent iron lines will be emitted from the inner region of the accretion disk. The emission line profiles will show a variety of strong field effects, which may be used as a probe of the spin parameter of the black hole and the structure of the accretion disk. In this paper, we generalize the previous relativistic line profile models by including both the black hole spinning effects and the non-axisymmetries of warped accretion disks. Our results show different features from the conventional calculations for either a flat disk around a Kerr black hole or a warped disk around a Schwarzschild black hole by presenting, at the same time, multiple peaks, rather long red tails, and time variations of line profiles with the precession of the disk. We show disk images as seen by a distant observer, which are distorted by the strong gravity. Although we are primarily concerned with the iron K-shell lines in this paper, the calculation is general and is valid for any emission lines produced from a warped accretion disk around a black hole.

  4. Strong Field Effects On Emission Line Profiles: Kerr Black Holes And Warped Accretion Disks

    NASA Astrophysics Data System (ADS)

    Wang, Yan; Li, X.

    2012-01-01

    If an accretion disk around a black hole is illuminated by hard X-rays from non-thermal coronae, fluorescent iron lines will be emitted from the inner region of the accretion disk. The emission line profiles will show a variety of strong field effects, which may be used as a probe of the spin parameter of the black hole and the structure of the accretion disk. In this paper we generalize the previous relativistic line profile models by including both the black hole spinning effects and the non-axisymmetry of warped accretion disks. Our results show different features from the conventional calculations for either a flat disk around a Kerr black hole or a warped disk around a Schwarzschild black hole by presenting, at the same time, multiple peaks, rather long red tails and time variations of line profiles with the precession of the disk. We show disk images as seen by a distant observer, which are distorted by the strong gravity. Although we are primarily concerned with the iron K-shell lines in this paper, the calculation is general and is valid for any emission lines produced from a warped accretion disk around a black hole. This work was supported by the Natural Science Foundation of China (under grant number 10873008), and the National Basic Research Program of China (973 Program 2009CB824800).

  5. STRONG FIELD EFFECTS ON EMISSION LINE PROFILES: KERR BLACK HOLES AND WARPED ACCRETION DISKS

    SciTech Connect

    Wang Yan; Li Xiangdong

    2012-01-10

    If an accretion disk around a black hole is illuminated by hard X-rays from non-thermal coronae, fluorescent iron lines will be emitted from the inner region of the accretion disk. The emission line profiles will show a variety of strong field effects, which may be used as a probe of the spin parameter of the black hole and the structure of the accretion disk. In this paper, we generalize the previous relativistic line profile models by including both the black hole spinning effects and the non-axisymmetries of warped accretion disks. Our results show different features from the conventional calculations for either a flat disk around a Kerr black hole or a warped disk around a Schwarzschild black hole by presenting, at the same time, multiple peaks, rather long red tails, and time variations of line profiles with the precession of the disk. We show disk images as seen by a distant observer, which are distorted by the strong gravity. Although we are primarily concerned with the iron K-shell lines in this paper, the calculation is general and is valid for any emission lines produced from a warped accretion disk around a black hole.

  6. Gene expression profiling and differentiation assessment in primary human hepatocyte cultures, established hepatoma cell lines, and human liver tissues

    SciTech Connect

    Olsavsky, Katy M.; Page, Jeanine L.; Johnson, Mary C.; Zarbl, Helmut; Strom, Stephen C.; Omiecinski, Curtis J. . E-mail: cjo10@psu.edu

    2007-07-01

    Frequently, primary hepatocytes are used as an in vitro model for the liver in vivo. However, the culture conditions reported vary considerably, with associated variability in performance. In this study, we characterized the differentiation character of primary human hepatocytes cultured using a highly defined, serum-free two-dimensional sandwich system, one that configures hepatocytes with collagen I as the substratum together with a dilute extracellular matrix (Matrigel{sup TM}) overlay combined with a defined serum-free medium containing nanomolar levels of dexamethasone. Gap junctional communication, indicated by immunochemical detection of connexin 32 protein, was markedly enhanced in hepatocytes cultured in the Matrigel sandwich configuration. Whole genome expression profiling enabled direct comparison of liver tissues to hepatocytes and to the hepatoma-derived cell lines, HepG2 and Huh7. PANTHER database analyses were used to identify biological processes that were comparatively over-represented among probe sets expressed in the in vitro systems. The robustness of the primary hepatocyte cultures was reflected by the extent of unchanged expression character when compared directly to liver, with more than 77% of the probe sets unchanged in each of the over-represented categories, representing such genes as C/EBP{alpha}, HNF4{alpha}, CYP2D6, and ABCB1. In contrast, HepG2 and Huh7 cells were unchanged from the liver tissues for fewer than 48% and 55% of these probe sets, respectively. Further, hierarchical clustering of the hepatocytes, but not the cell lines, shifted from donor-specific to treatment-specific when the probe sets were filtered to focus on phenobarbital-inducible genes, indicative of the highly differentiated nature of the hepatocytes when cultured in a highly defined two-dimensional sandwich system.

  7. X-ray bumps, iron K-alpha lines, and X-ray suppression by obscuring tori in Seyfert galaxies

    NASA Technical Reports Server (NTRS)

    Krolik, Julian H.; Madau, Piero; Zycki, Piotr T.

    1994-01-01

    We investigate the X-ray spectral properties of unobscured type 1 and obscured type 2 Seyferts as predicted by the unified Seyfert scheme. We consider the reprocessing of X-ray photons by photoelectric absorption, iron fluorescence, and Compton downscattering in the obscuring tori surrounding these active nuclei, and compute by Monte Carlo methods the reprocessed spectra as a function of the viewing angle. Depending on the optical depth and shape of the torus, and on the viewing angle, the X-ray flux can be suppressed by substantial factors when our line of sight is obscured. We show that an immediate consequence of the existence of an obscuring thick torus is the production in the spectra of type 1 Seyfert galaxies of a bump in the continuum above 10-20 keV and an Fe K-alpha line with significant equivalent width. In those type 2 Seyferts for which the hard X-ray spectrum has been substantially suppressed, the equivalent width of the Fe K-alpha line in the transmitted spectrum can be very large.

  8. Variability of Solar UV Irradiance Related to Bright Magnetic Features Observed in Call K-Line: Relationship between Lyman alpha and K-line Report for UARS funding agency

    NASA Technical Reports Server (NTRS)

    Zirin, Harold; Cameron, Robert

    1999-01-01

    In this report we comment on the relationship between the Lyman alpha and Calcium K-line emission from the Sun. We firstly examine resolved Lyman alpha images (from TRACE) and resolved K-line images. We find that the Lyman alpha emission is consistent with a linear dependence on the K-line emission. As this is in conflict with the analysis of Johannesson et al.(1995, 1998) we proceed by comparing the disk integrated Lyman alpha flux as a function of ratio between the disk integrated Mg II core and wing fluxes (Johannesson et al (1998) having previously found a linear dependence between this index and the BBSO K-line index). We find that a reasonably good fit can be obtained, however note the discrepancies which lead Johannesson et al to consider the square root relationship. We suggest an alternative interpretation of the discrepancy.

  9. SUPERNOVA RESONANCE-SCATTERING LINE PROFILES IN THE ABSENCE OF A PHOTOSPHERE

    SciTech Connect

    Friesen, Brian; Baron, E.; Branch, David; Chen Bin; Parrent, Jerod T.; Thomas, R. C.

    2012-11-15

    In supernova (SN) spectroscopy relatively little attention has been given to the properties of optically thick spectral lines in epochs following the photosphere's recession. Most treatments and analyses of post-photospheric optical spectra of SNe assume that forbidden-line emission comprises most if not all spectral features. However, evidence exists that suggests that some spectra exhibit line profiles formed via optically thick resonance-scattering even months or years after the SN explosion. To explore this possibility, we present a geometrical approach to SN spectrum formation based on the 'Elementary Supernova' model, wherein we investigate the characteristics of resonance-scattering in optically thick lines while replacing the photosphere with a transparent central core emitting non-blackbody continuum radiation, akin to the optical continuum provided by decaying {sup 56}Co formed during the explosion. We develop the mathematical framework necessary for solving the radiative transfer equation under these conditions and calculate spectra for both isolated and blended lines. Our comparisons with analogous results from the Elementary Supernova code SYNOW reveal several marked differences in line formation. Most notably, resonance lines in these conditions form P Cygni-like profiles, but the emission peaks and absorption troughs shift redward and blueward, respectively, from the line's rest wavelength by a significant amount, despite the spherically symmetric distribution of the line optical depth in the ejecta. These properties and others that we find in this work could lead to misidentification of lines or misattribution of properties of line-forming material at post-photospheric times in SN optical spectra.

  10. Modeling X-ray emission line profiles from massive star winds - A review

    NASA Astrophysics Data System (ADS)

    Ignace, Richard

    2016-09-01

    The Chandra and XMM-Newton X-ray telescopes have led to numerous advances in the study and understanding of astrophysical X-ray sources. Particularly important has been the much increased spectral resolution of modern X-ray instrumentation. Wind-broadened emission lines have been spectroscopically resolved for many massive stars. This contribution reviews approaches to the modeling of X-ray emission line profile shapes from single stars, including smooth winds, winds with clumping, optically thin versus thick lines, and the effect of a radius-dependent photoabsorption coefficient.

  11. Molecular profiling indicates orthotopic xenograft of glioma cell lines simulate a subclass of human glioblastoma

    PubMed Central

    Shankavaram, Uma T; Bredel, Markus; Burgan, William E; Carter, Donna; Tofilon, Philip; Camphausen, Kevin

    2012-01-01

    Abstract Cell line models have been widely used to investigate glioblastoma multiforme (GBM) pathobiology and in the development of targeted therapies. However, GBM tumours are molecularly heterogeneous and how cell lines can best model that diversity is unknown. In this report, we investigated gene expression profiles of three preclinical growth models of glioma cell lines, in vitro and in vivo as subcutaneous and intracerebral xenografts to examine which cell line model most resembles the clinical samples. Whole genome DNA microarrays were used to profile gene expression in a collection of 25 high-grade glioblastomas, and comparisons were made to profiles of cell lines under three different growth models. Hierarchical clustering revealed three molecular subtypes of the glioblastoma patient samples. Supervised learning algorithm, trained on glioma subtypes predicted the intracerebral cell line model with one glioma subtype (r = 0.68; 95% bootstrap CI –0.41, 0.46). Survival analysis of enriched gene sets (P < 0.05) revealed 19 biological categories (146 genes) belonging to neuronal, signal transduction, apoptosis- and glutamate-mediated neurotransmitter activation signals that are associated with poor prognosis in this glioma subclass. We validated the expression profiles of these gene categories in an independent cohort of patients from ‘The Cancer Genome Atlas’ project (r = 0.62, 95% bootstrap CI: –0.42, 0.43). We then used these data to select and inhibit a novel target (glutamate receptor) and showed that LY341595, a glutamate receptor specific antagonist, could prolong survival in intracerebral tumour-implanted mice in combination with irradiation, providing an in vivo cell line system of preclinical studies. PMID:21595825

  12. Observations and analysis of O(1D) and NH2 line profiles for the coma of comet P/Halley

    NASA Technical Reports Server (NTRS)

    Smyth, William H.; Combi, Michael R.; Roesler, Fred L.; Scherb, Frank

    1995-01-01

    A set of high-resolution Fabry-Perot measurements of the coma of comet P/Halley was acquired in the (O I) 6300 A and NH2 6298.62 A emission lines. These high-resolution measurements provide the first optical observations capable of studying directly the photochemical kinetics and dynamic outflow of the coma. The observations were analyzed by a Monte Carlo Particle Trajectory Model. The agreement of the model and observed line profiles was excellent and verified the underlying dynamics, exothermic photodissociative chemistry, and collisional thermalization in the coma. The somewhat wider intrinsic line profile width for the O(1D) emission in 1986 January compared to 1986 May, is, for example, produced by the larger outflow speeds and gas temperatures nearer perihelion in January. The January O(1D) profile, which is wider than the January NH2 profile, is indicative of the photochemical kinetics in the dissociation of the parent molecules H2O and OH in the coma. The absolute calibration of the observations in 1986 January allowed the production rates for H2O and the NH2-parent molecules to be determined. The average daily water production rates derived from the O(1D) emission data for January 16 and 17 are presented. These very large water production rates are consistent with the extrapolated (and 7.6 day time variable) water production rates determined from the analysis of lower spectral resolution observations for O(1D) and H-alpha emissions that covered the time period up to January 13. The large production rates on January 16 and 17 establish that the maximum water production rate for comet Halley accurred pre-perihelion in January. Implications drawn from comparison with 18 cm radio emission data in January suggest that the peak water production rate was even larger. The average production rate for NH3 determined from the NH2 emission data for January 17 was (1.48 +/- 0.10) x 10(exp 28) molecules/s, yielding an NH3/H2O production rate ratio of 0.55%.

  13. Analysis of H-alpha flare spectra

    NASA Technical Reports Server (NTRS)

    Kulander, J. L.

    1977-01-01

    Spectrographs of the H-alpha line taken at 15 second intervals from the event of 5 Sept. 1973 were interpreted by comparison with synthetic profiles. A sequence of 27 high resolution H alpha profiles was obtained from the second brightest flare kernel. The profiles were generally self reversed with a maximum peak intensity of 1.16 x continuum and a maximum central intensity of .91 x continuum. The line characteristics such as red and violet peak intensities and positions, center shifts and wing intensities were tabulated. Synthetic H-alpha profiles were generated from a finite layer assuming simple parameteric forms for the source function and velocity field. The velocity chosen always decreased with optical depth and had the same sign. For absorption profiles, bisector shifts were calculated for a variety of velocities. The velocity field and source function were derived as a function of optical depth and time.

  14. Errors associated with fitting Gaussian profiles to noisy emission-line spectra

    NASA Technical Reports Server (NTRS)

    Lenz, Dawn D.; Ayres, Thomas R.

    1992-01-01

    Landman et al. (1982) developed prescriptions to predict profile fitting errors for Gaussian emission lines perturbed by white noise. We show that their scaling laws can be generalized to more complicated signal-dependent 'noise models' of common astronomical detector systems.

  15. Pulsational mode-typing in line profile variables. I - Four Beta Cephei stars

    NASA Astrophysics Data System (ADS)

    Campos, A. J.; Smith, M. A.

    1980-05-01

    The detailed variations of line profiles in the Beta Cephei-type variable stars Gamma Pegasi, Beta Cephei, Delta Ceti and Sigma Scorpii are modeled throughout their pulsation cycles in order to classify the dominant pulsation mode as radial or nonradial. High-dispersion Reticon observations of the variables were obtained for the Si III line at 4567 A, and line profiles broadened by radial or nonradial pulsations, rotation and radial-tangential macroturbulence were calculated based on a model atmosphere. It is found that only a radial pulsation mode can reproduce the radial velocity amplitude, changes in line asymmetry and uniform line width observed in all four stars. Results are in agreement with the color-to-light arguments of Stamford and Watson (1978), and suggest that radial pulsation plays the dominant role in the observed variations in most Beta Cephei stars. Evidence for shocks or moving shells is also found in visual line data for Sigma Scorpii and an ultraviolet line of Beta Cephei, together with evidence of smooth, secular period changes in Beta Cephei and Delta Ceti.

  16. Observations of gamma-ray line profiles from SN 1987A

    NASA Technical Reports Server (NTRS)

    Tueller, J.; Barthelmy, S.; Gehrels, N.; Teegarden, B. J.; Leventhal, M.

    1990-01-01

    Fully resolved gamma-ray line observations from the decay of Co-56 in SN 1987A are presented. Data are from the first two balloon flights of the Gamma-Ray Imaging Spectrometer. On day 433 (after the initial optical sighting) the 847 and 1238 keV lines from Co-56 were observed at 2.3 and 4.3 sigma significance. On day 613, the lines at 847, 1238, and 2599 keV were observed at 4.6, 3.4, and 1.9 sigma, respectively. The combined significance for the three-line complex in both flights is 7.8 sigma. Gaussian profiles yield acceptable least-squares fits to the lines. The line profiles are centered on the red side of the rest energy with typical velocity dispersions of about 3500 km/s FWHM, consistent with an optically thin source, but the line intensities are less than about 30 percent of those produced by the 0.075 solar mass of Co-56 determined from the bolometric light curve.

  17. Pulsational mode-typing in line profile variables. I - Four Beta Cephei stars

    NASA Technical Reports Server (NTRS)

    Campos, A. J.; Smith, M. A.

    1980-01-01

    The detailed variations of line profiles in the Beta Cephei-type variable stars Gamma Pegasi, Beta Cephei, Delta Ceti and Sigma Scorpii are modeled throughout their pulsation cycles in order to classify the dominant pulsation mode as radial or nonradial. High-dispersion Reticon observations of the variables were obtained for the Si III line at 4567 A, and line profiles broadened by radial or nonradial pulsations, rotation and radial-tangential macroturbulence were calculated based on a model atmosphere. It is found that only a radial pulsation mode can reproduce the radial velocity amplitude, changes in line asymmetry and uniform line width observed in all four stars. Results are in agreement with the color-to-light arguments of Stamford and Watson (1978), and suggest that radial pulsation plays the dominant role in the observed variations in most Beta Cephei stars. Evidence for shocks or moving shells is also found in visual line data for Sigma Scorpii and an ultraviolet line of Beta Cephei, together with evidence of smooth, secular period changes in Beta Cephei and Delta Ceti.

  18. The Analysis of the H Lyman α Emission Line Profile from Jupiter's Aurora

    NASA Astrophysics Data System (ADS)

    Rego, Daniel; Clarke, John T.; Jaffel, Lotfi Ben; Ballester, Gilda E.; Prangé, Renée; McConnell, Jack

    2001-04-01

    function. This model shows that Lyman α profiles are not dependent upon the identity of the particles for a given penetration depth. These profiles only constrain the atmospheric H column density above the emitting layer, H col. Best agreement with the data is found with the complete frequency redistribution (CR). We derive an auroral H col of 1.3×10 16 cm -2 for all spectra with an upper limit of 5×10 16 cm -2. Precipitating protons also produce fast H atoms by charge exchange which can also be excited, but the resulting Doppler-shifted profile was not detected. Present data thus rule out protons as being the only precipitating particles. In the auroral zones, theoretical models predict that chemical reactions induced by particle precipitations often result in the production of atomic hydrogen, and thus an enhancement of the H density is expected. However, the value of H col we derive, between ˜8 and 23 times less than the equatorial values of L. Ben Jaffel, J. T. Clarke, R. Prangé, R. Gladstone, and A. Vidal-Madjar (1993, The Lyman alpha bulge of Jupiter: Effects of a non-thermal velocity field. J. Geophys. Res. Lett.20(8), 747-750), is in good agreement with the auroral values of R. Prangé, D. Rego, L. Pallier, L. Ben Jaffel, C. Emerich, J. T. Clarke, G. E. Ballester, and J. Ajello (1997, Detection of self-reversed Lyman α lines from the jovian aurorae with the Hubble space Telescope, Astrophys. J.484, L169-L173). This suggests that the H abundance predicted with standard atmospheric model is unrealistically large in the auroral region.

  19. Microvariability of line profiles in the spectra of OB stars: III. The supergiant ρ LEO

    NASA Astrophysics Data System (ADS)

    Kholtygin, A. F.; Fabrika, S. N.; Burlakova, T. E.; Valyavin, G. G.; Chuntonov, G. A.; Kudryavtsev, D. O.; Kang, D.; Yushkin, M. V.; Galazutdinov, G. A.

    2007-11-01

    We observed the bright supergiant ρ Leo (B1 lab) in January-February 2004 using the 6-m telescope of the Special Astrophysical Observatory (Russia) and the 1.8-m telescope of the Bohyunsan Optical Astronomy Observatory (South Korea). 47 spectra with high time resolution (4-10 min), signal-to-noise ratios 300-1000, and spectral resolutions 45 000-60 000 were obtained. We detected variability in the HeI, SiII, SiIII, and NII line profiles, which may be due to rotational modulation of the profiles and photospheric pulsations of ρ Leo. The possible influence of the stellar magnetic field on the line-profile variations is discussed.

  20. Line printing solution-processable small molecules with uniform surface profile via ink-jet printer.

    PubMed

    Liu, Huimin; Xu, Wei; Tan, Wanyi; Zhu, Xuhui; Wang, Jian; Peng, Junbiao; Cao, Yong

    2016-03-01

    Line printing offers a feasible approach to remove the pixel well structure which is widely used to confine the ink-jet printed solution. In the study, a uniform line is printed by an ink-jet printer. To achieve a uniform surface profile of the printed line, 10vol% low-volatile solvent DMA (3,4-Dimethylanisole) is mixed with high-volatile solvent Pxy (p-xylene) as the solvent. After a solution-processable small molecule is dissolved, the surface tension of DMA solution becomes lower than that of Pxy solution, which creates an inward Marangoni flow during the solvent evaporation. The inward Marangoni flow balances out the outward capillary flow, thereby forming a flat film surface. The line width of the printed line depends on the contact angle of the solution on the hole injection layer. PMID:26669496

  1. Dispersion corrections to the Gaussian profile describing the Doppler broadening of spectral lines

    NASA Astrophysics Data System (ADS)

    Wójtewicz, S.; Wcisło, P.; Lisak, D.; Ciuryło, R.

    2016-04-01

    A dispersionally corrected Gaussian profile describing Doppler-broadened spectral line shapes is presented. Proposed corrections include the frequency dependence of the Doppler shifting caused by dispersion as well as by light frequency variation over the whole spectral line shape. It is shown that the frequency dependence of the Doppler shifting can have a non-negligible influence on the line-shape model and can affect the line shape even at the relative level of 10-5. Moreover, this effect also influences the determination of the line position at the level of kilohertz. Finally, the impact of the presented results on the Doppler width thermometry and precise molecular spectroscopy for fundamental studies is emphasized.

  2. THE Ly{alpha} LINES OF H I AND He II: A DIFFERENTIAL HANLE EFFECT FOR EXPLORING THE MAGNETISM OF THE SOLAR TRANSITION REGION

    SciTech Connect

    Trujillo Bueno, Javier; Stepan, Jiri; Belluzzi, Luca E-mail: stepan@iac.es

    2012-02-10

    The Ly{alpha} line of He II at 304 Angstrom-Sign is one of the spectral lines of choice for EUV channels of narrowband imagers on board space telescopes, which provide spectacular intensity images of the outer solar atmosphere. Since the magnetic field information is encoded in the polarization of the spectral line radiation, it is important to investigate whether the He II line radiation from the solar disk can be polarized, along with its magnetic sensitivity. Here we report some theoretical predictions concerning the linear polarization signals produced by scattering processes in this strong emission line of the solar transition region, taking into account radiative transfer and the Hanle effect caused by the presence of organized and random magnetic fields. We find that the fractional polarization amplitudes are significant ({approx}1%), even when considering the wavelength-integrated signals. Interestingly, the scattering polarization of the Ly{alpha} line of He II starts to be sensitive to the Hanle effect for magnetic strengths B {approx}> 100 G (i.e., for magnetic strengths of the order of and larger than the Hanle saturation field of the hydrogen Ly{alpha} line at 1216 Angstrom-Sign ). We therefore propose simultaneous observations of the scattering polarization in both Ly{alpha} lines to facilitate magnetic field measurements in the upper solar chromosphere. Even the development of a narrowband imaging polarimeter for the He II 304 Angstrom-Sign line alone would be already of great diagnostic value for probing the solar transition region.

  3. Spectral Line-Shape Model to Replace the Voigt Profile in Spectroscopic Databases

    NASA Astrophysics Data System (ADS)

    Lisak, Daniel; Ngo, Ngoc Hoa; Tran, Ha; Hartmann, Jean-Michel

    2014-06-01

    The standard description of molecular line shapes in spectral databases and radiative transfer codes is based on the Voigt profile. It is well known that its simplified assumptions of absorber free motion and independence of collisional parameters from absorber velocity lead to systematic errors in analysis of experimental spectra, and retrieval of gas concentration. We demonstrate1,2 that the partially correlated quadratic speed-dependent hardcollision profile3. (pCqSDHCP) is a good candidate to replace the Voigt profile in the next generations of spectroscopic databases. This profile takes into account the following physical effects: the Doppler broadening, the pressure broadening and shifting of the line, the velocity-changing collisions, the speed-dependence of pressure broadening and shifting, and correlations between velocity- and phase/state-changing collisions. The speed-dependence of pressure broadening and shifting is incorporated into the pCqSDNGP in the so-called quadratic approximation. The velocity-changing collisions lead to the Dicke narrowing effect; however in many cases correlations between velocityand phase/state-changing collisions may lead to effective reduction of observed Dicke narrowing. The hard-collision model of velocity-changing collisions is also known as the Nelkin-Ghatak model or Rautian model. Applicability of the pCqSDHCP for different molecular systems was tested on calculated and experimental spectra of such molecules as H2, O2, CO2, H2O in a wide span of pressures. For all considered systems, pCqSDHCP is able to describe molecular spectra at least an order of magnitude better than the Voigt profile with all fitted parameters being linear with pressure. In the most cases pCqSDHCP can reproduce the reference spectra down to 0.2% or better, which fulfills the requirements of the most demanding remote-sensing applications. An important advantage of pCqSDHCP is that a fast algorithm for its computation was developedab4,5 and allows

  4. Biological activity profiles of 1alpha,25-dihydroxyvitamin D2, D3, D4, D7, and 24-epi-1alpha,25-dihydroxyvitamin D2.

    PubMed

    Tsugawa, N; Nakagawa, K; Kawamoto, Y; Tachibana, Y; Hayashi, T; Ozono, K; Okano, T

    1999-04-01

    We have synthesized several 1alpha,25-dihydroxyvitamin D [1alpha,25(OH)2D] derivatives and evaluated their biological activity in terms of their binding affinity for the vitamin D receptor (VDR) and vitamin D-binding protein (DBP), antiproliferative or differentiation-inducing effects on human promyelocytic leukemic HL-60 cells, and transcriptional activity on a rat 25-hydroxyvitamin D3-24-hydroxylase gene promoter, including two vitamin D-responsive elements (VDREs), and human osteocalcin gene promoter, including a VDRE in transfected human osteosarcoma MG-63 cells. Furthermore, human VDR- or retinoic acid X receptor alpha (RXR alpha)-mediated luciferase activities of the derivatives were also measured by a one-hybrid system in human epitheloid carcinoma, cervix HeLa cells and African green monkey kidney CV-1 cells. Binding affinity for VDR, bone-resorbing activity, antiproliferative and cell-differentiating effects, transactivation potencies on target genes and VDR- or RXR alpha-mediated gene regulations of 1alpha,25(OH)2D2 and 1alpha,25(OH)2D4 were almost comparable to the effects of 1alpha,25(OH)2D3 while 24-epi-1alpha,25(OH)2D2 and 1alpha,25(OH)2D7 were much less active than 1alpha,25(OH)2D3 in these respects. This is the first report concerning biological assessment of 1alpha,25(OH)2D2, 1alpha,25(OH)2D3, 1alpha,25(OH)2D4, 24-epi-1alpha,25(OH)2D2 and 1alpha,25(OH)2D7 at the molecular level, especially with regards to the structural differences at the 24R- or 24S-methyl group and a double bond between carbons 22 and 23 in the side chain of 1alpha,25(OH)2D derivatives. PMID:10328556

  5. Absorption-line profiles in a companion spectrum of a mass-losing cool supergiant

    NASA Technical Reports Server (NTRS)

    Rodrigues, Liliya L.; Boehm-Vitense, Erika

    1992-01-01

    Cool star winds can best be observed in resonance absorption lines seen in the spectrum of a hot companion, due to the wind passing in front of the blue star. We calculated absorption line profiles that would be seen in the ultraviolet part of the blue companion spectrum. Line profiles are derived for different radial dependences of the cool star wind and for different orbital phases of the binary. Bowen and Wilson find theoretically that stellar pulsations drive mass loss. We therefore apply our calculations to the Cepheid binary S Muscae which has a B5V companion. We find an upper limit for the Cepheid mass loss of M less than or equal to 7 x 10 (exp -10) solar mass per year provided that the stellar wind of the companion does not influence the Cepheid wind at large distances.

  6. Absorption line profiles in a companion spectrum of a mass losing cool supergiant

    NASA Technical Reports Server (NTRS)

    Rodrigues, Liliya L.; Boehm-Vitense, Erika

    1990-01-01

    Cool star winds can best be observed in resonance absorption lines seen in the spectrum of a hot companion, due to the wind passing in front of the blue star. We calculated absorption line profiles that would be seen in the ultraviolet part of the blue companion spectrum. Line profiles are derived for different radial dependences of the cool star wind and for different orbital phases of the binary. Bowen and Wilson find theoretically that stellar pulsations drive mass loss. We therefore apply our calculations to the Cepheid binary S Muscae which has a B5V companion. We find an upper limit for the Cepheid mass loss of M less than or equal to 7 x 10(exp -10) solar mass per year provided that the stellar wind of the companion does not influence the Cepheid wind at large distances.

  7. Morphology and variability of helium line profiles in the P Cygni spectrum

    NASA Astrophysics Data System (ADS)

    Markova, N.

    1993-03-01

    Results are presented on a three-year study of the morphology and variability of 13 helium lines in the P Cygni optical spectrum. It was found that most lines in the P Cygni spectrum show profiles with a complicated structure: discrete components (with the most probable values for the velocity ranging from -140 to -180 km/s and from -200 to -220 km/s), which are superposed on a broader 'underlying' P Cygni profile. The central velocity of the helium discrete components is nearly the same for all lines in a given spectrum (sigma(v) = +/- 4 km/s). However, this velocity varies with time; the variations are qualitatively similar to those observed in other ions in the spectrum, e.g., HI (Markova, 1986, 1990), O II, Si III, and N II (Markova and Kolka, 1988), and Fe III (Lamers et al., 1985).

  8. Long Term Profile Variability of Double-Peaked Emission Lines in AGNs

    NASA Astrophysics Data System (ADS)

    Lewis, K.; Eracleous, M.; Halpern, J.; Storchi-Bergmann, T.

    2004-06-01

    An increasing number of AGNs exhibit broad, double-peaked Balmer emission lines, which are thought to arise from the outer regions of the accretion disk which fuels the AGN. The line profiles are observed to vary on a characteristic timescales of 5-10 years. The variability is not a reverberation effect; it is a manifestation of physical changes in the disk. Our group has monitored a set of 20 double-peaked emitters for the past 8 years (longer for some objects). Here, we characterize the variability of the double-peaked Hα line profiles in five objects from our sample. By experimenting with simple models, we find that disks with a single precessing spiral arm are able to reproduce many of the variability trends that are seen in the data.

  9. Hit rates and radiation doses to nuclei of bone lining cells from alpha-particle-emitting radionuclides

    NASA Technical Reports Server (NTRS)

    Polig, E.; Jee, W. S.; Kruglikov, I. L.

    1992-01-01

    Factors relating the local concentration of a bone-seeking alpha-particle emitter to the mean hit rate have been determined for nuclei of bone lining cells using a Monte Carlo procedure. Cell nuclei were approximated by oblate spheroids with dimensions and location taken from a previous histomorphometric study. The Monte Carlo simulation is applicable for planar and diffuse labels at plane or cylindrical bone surfaces. Additionally, the mean nuclear dose per hit, the dose mean per hit, the mean track segment length and its second moment, the percentage of stoppers, and the frequency distribution of the dose have been determined. Some basic features of the hit statistics for bone lining cells have been outlined, and the consequences of existing standards of radiation protection with regard to the hit frequency to cell nuclei are discussed.

  10. New pterocarpanquinones: synthesis, antineoplasic activity on cultured human malignant cell lines and TNF-alpha modulation in human PBMC cells.

    PubMed

    Netto, Chaquip D; da Silva, Alcides J M; Salustiano, Eduardo J S; Bacelar, Thiago S; Riça, Ingred G; Cavalcante, Moises C M; Rumjanek, Vivian M; Costa, Paulo R R

    2010-02-15

    A new pterocarpanquinone (5a) was synthesized through a palladium catalyzed oxyarylation reaction and was transformed, through electrophilic substitution reaction, into derivatives 5b-d. These compounds showed to be active against human leukemic cell lines and human lung cancer cell lines. Even multidrug resistant cells were sensitive to 5a, which presented low toxicity toward peripheral blood mononuclear cells (PBMC) cells and decreased the production of TNF-alpha by these cells. In the laboratory these pterocarpanquinones were reduced by sodium dithionite in the presence of thiophenol at physiological pH, as NAD(P)H quinone oxidoredutase-1 (NQO1) catalyzed two-electron reduction, and the resulting hydroquinone undergo structural rearrangements, leading to the formation of Michael acceptors, which were intercepted as adducts of thiophenol. These results suggest that these compounds could be activated by bioreduction. PMID:20117936

  11. THE HANLE EFFECT OF THE HYDROGEN Ly{alpha} LINE FOR PROBING THE MAGNETISM OF THE SOLAR TRANSITION REGION

    SciTech Connect

    Trujillo Bueno, Javier; Stepan, JirI; Casini, Roberto E-mail: stepan@iac.es

    2011-09-01

    We present some theoretical predictions concerning the amplitude and magnetic sensitivity of the linear-polarization signals produced by scattering processes in the hydrogen Ly{alpha} line of the solar transition region. To this end, we have calculated the atomic-level polarization (population imbalances and quantum coherences) induced by anisotropic radiation pumping in semiempirical and hydrodynamical models of the solar atmosphere, taking into account radiative transfer and the Hanle effect caused by the presence of organized and random magnetic fields. The line-center amplitudes of the emergent linear-polarization signals are found to vary typically between 0.1% and 1%, depending on the scattering geometry and the strength and orientation of the magnetic field. The results shown here encourage the development of UV polarimeters for sounding rockets and space telescopes with the aim of opening up a diagnostic window for magnetic field measurements in the upper chromosphere and transition region of the Sun.

  12. Thermonuclear supernovae: probing magnetic fields by positrons and late-time IR line profiles

    SciTech Connect

    Penney, R.; Hoeflich, P. E-mail: rpenney@g.clemson.edu

    2014-11-01

    We show the importance of γ and positron transport for the formation of late-time spectra in Type Ia supernovae (SNe Ia). The goal is to study the imprint of magnetic fields (B) on late-time IR line profiles, particularly the [Fe II] feature at 1.644 μm, which becomes prominent two to three months after the explosion. As a benchmark, we use the explosion of a Chandrasekhar mass (M {sub Ch}) white dwarf (WD) and, specifically, a delayed detonation model that can reproduce the light curves and spectra for a Branch-normal SN Ia. We assume WDs with initial magnetic surface fields between 1 and 10{sup 9} G. We discuss large-scale dipole and small-scale magnetic fields. We show that positron transport effects must be taken into account for the interpretation of emission features starting at about one to two years after maximum light, depending on the size of B. The [Fe II] line profile and its evolution with time can be understood in terms of the overall energy input by radioactive decay and the transition from a γ-ray to a positron-dominated regime. We find that the [Fe II] line at 1.644 μm can be used to analyze the overall chemical and density structure of the exploding WD up to day 200 without considering B. At later times, positron transport and magnetic field effects become important. After about day 300, the line profile allows one to probe the size of the B-field. The profile becomes sensitive to the morphology of B at about day 500. In the presence of a large-scale dipole field, a broad line is produced in M {sub Ch} mass explosions that may appear flat-topped or rounded depending on the inclination at which the SN is observed. Small or no directional dependence of the spectra is found for small-scale B. We note that narrow-line profiles require central {sup 56}Ni as shown in our previous studies. Persistent broad-line, flat-topped profiles require high-density burning, which is the signature of a WD close to M {sub Ch}. Good time coverage is required to

  13. Thermonuclear Supernovae: Probing Magnetic Fields by Positrons and Late-time IR Line Profiles

    NASA Astrophysics Data System (ADS)

    Penney, R.; Hoeflich, P.

    2014-11-01

    We show the importance of γ and positron transport for the formation of late-time spectra in Type Ia supernovae (SNe Ia). The goal is to study the imprint of magnetic fields (B) on late-time IR line profiles, particularly the [Fe II] feature at 1.644 μm, which becomes prominent two to three months after the explosion. As a benchmark, we use the explosion of a Chandrasekhar mass (M Ch) white dwarf (WD) and, specifically, a delayed detonation model that can reproduce the light curves and spectra for a Branch-normal SN Ia. We assume WDs with initial magnetic surface fields between 1 and 109 G. We discuss large-scale dipole and small-scale magnetic fields. We show that positron transport effects must be taken into account for the interpretation of emission features starting at about one to two years after maximum light, depending on the size of B. The [Fe II] line profile and its evolution with time can be understood in terms of the overall energy input by radioactive decay and the transition from a γ-ray to a positron-dominated regime. We find that the [Fe II] line at 1.644 μm can be used to analyze the overall chemical and density structure of the exploding WD up to day 200 without considering B. At later times, positron transport and magnetic field effects become important. After about day 300, the line profile allows one to probe the size of the B-field. The profile becomes sensitive to the morphology of B at about day 500. In the presence of a large-scale dipole field, a broad line is produced in M Ch mass explosions that may appear flat-topped or rounded depending on the inclination at which the SN is observed. Small or no directional dependence of the spectra is found for small-scale B. We note that narrow-line profiles require central 56Ni as shown in our previous studies. Persistent broad-line, flat-topped profiles require high-density burning, which is the signature of a WD close to M Ch. Good time coverage is required to separate the effects of optical

  14. Metabolic profiling of breast cancer: Differences in central metabolism between subtypes of breast cancer cell lines.

    PubMed

    Willmann, Lucas; Schlimpert, Manuel; Halbach, Sebastian; Erbes, Thalia; Stickeler, Elmar; Kammerer, Bernd

    2015-09-01

    Although the concept of aerobic glycolysis in cancer was already reported in the 1930s by Otto Warburg, the understanding of metabolic pathways remains challenging especially due to the heterogeneity of cancer. In consideration of four different time points (1, 2, 4, and 7 days of incubation), GC-MS profiling of metabolites was performed on cell extracts and supernatants of breast cancer cell lines (MDA-MB-231, -453, BT-474) with different sub classification and the breast epithelial cell line MCF-10A. To the exclusion of trypsinization, direct methanolic extraction, cell scraping and cell disruption was executed to obtain central metabolites. Major differences in biochemical pathways have been observed in the breast cancer cell lines compared to the breast epithelial cell line, as well as between the breast cancer cell lines themselves. Characteristics of breast cancer subtypes could be correlated to their individual metabolic profiles. PLS-DA revealed the discrimination of breast cancer cell lines from MCF-10A based on elevated amino acid levels. The observed metabolic signatures have great potential as biomarker for breast cancer as well as an improved understanding of subtype specific phenomenons of breast cancer. PMID:26218769

  15. Radial dependence of line profile variability in seven O9-B0.5 stars

    NASA Astrophysics Data System (ADS)

    Martins, F.; Marcolino, W.; Hillier, D. J.; Donati, J.-F.; Bouret, J.-C.

    2015-02-01

    Context. Massive stars show a variety of spectral variabilities: discrete absorption components in UV P-Cygni profiles, optical line profile variability, X-ray variability, and radial velocity modulations. Aims: Our goal is to study the spectral variability of single OB stars to better understand the relation between photospheric and wind variability. For that, we rely on high spectral resolution and on high signal-to-noise ratio optical spectra collected with the spectrograph NARVAL on the Télescope Bernard Lyot at Pic du Midi. Methods: We investigated the variability of twelve spectral lines by means of the temporal variance spectrum. The selected lines probe the radial structure of the atmosphere from the photosphere to the outer wind. We also performed a spectroscopic analysis with atmosphere models to derive the stellar and wind properties and to constrain the formation region of the selected lines. Results: We show that variability is observed in the wind lines of all bright giants and supergiants on a daily timescale. Lines formed in the photosphere are sometimes variable, sometimes not. The dwarf stars do not show any sign of variability. If variability is observed on a daily timescale, it can also (but not always) be observed on hourly timescales, albeit with lower amplitude. There is a very clear correlation between amplitude of the variability and fraction of the line formed in the wind. Strong anti-correlations between the different parts of the temporal variance spectrum are observed. Conclusions: Our results indicate that variability is stronger in lines formed in the wind. A link between photospheric and wind variability is not obvious from our study, since wind variability is observed regardless of the level of photospheric variability. Different photospheric lines also show different degrees of variability. Appendices are available in electronic form at http://www.aanda.org

  16. Global metabolic profile identifies choline kinase alpha as a key regulator of glutathione-dependent antioxidant cell defense in ovarian carcinoma

    PubMed Central

    Granata, Anna; Nicoletti, Roberta; Perego, Paola; Iorio, Egidio; Krishnamachary, Balaji; Benigni, Fabio; Ricci, Alessandro; Podo, Franca; Bhujwalla, Zaver M.; Canevari, Silvana

    2015-01-01

    Epithelial Ovarian Cancer (EOC) “cholinic phenotype”, characterized by increased intracellular phosphocholine content sustained by over-expression/activity of choline kinase-alpha (ChoKα/CHKA), is a metabolic cellular reprogramming involved in chemoresistance with still unknown mechanisms. By stable CHKA silencing and global metabolic profiling here we demonstrate that CHKA knockdown hampers growth capability of EOC cell lines both in vitro and in xenotransplant in vivo models. It also affected antioxidant cellular defenses, decreasing glutathione and cysteine content while increasing intracellular levels of reactive oxygen species, overall sensitizing EOC cells to current chemotherapeutic regimens. Natural recovering of ChoKα expression after its transient silencing rescued the wild-type phenotype, restoring intracellular glutathione content and drug resistance. Rescue and phenocopy of siCHKA-related effects were also obtained by artificial modulation of glutathione levels. The direct relationship among CHKA expression, glutathione intracellular content and drug sensitivity was overall demonstrated in six different EOC cell lines but notably, siCHKA did not affect growth capability, glutathione metabolism and/or drug sensitivity of non-tumoral immortalized ovarian cells. The “cholinic phenotype”, by recapitulating EOC addiction to glutathione content for the maintenance of the antioxidant defense, can be therefore considered a unique feature of cancer cells and a suitable target to improve chemotherapeutics efficacy. PMID:25796169

  17. The Magnetic Sensitivity of the Stokes I Profile of the 15260 Å Line of Mn I

    NASA Astrophysics Data System (ADS)

    Asensio Ramos, A.

    2009-01-01

    The near-IR line of Mn I at 15262.7 Å has recently been proposed as a new tool for diagnosing the magnetic field strength and magnetic energy density associated with unresolved magnetic structures, due to the enhanced sensitivity of the Stokes I profile. In this paper, the behavior of the line, focusing on the properties of the Stokes I profile, is analyzed in detail with the aid of state-of-the-art magneto-hydrodynamical simulations of the solar surface convection. The line is synthesized taking into account that the splitting and the strength of the Zeeman components have to be calculated under the framework of the Paschen-Back theory via the numerical diagonalization of the total Hamiltonian, including the hyperfine and Zeeman contributions. The peak ratio and separation of the blue and red lobes of the emergent Stokes I profile are shown to be correlated with the magnetic field strength when no smearing is taken into account, while the correlation slightly degrades when diffraction and stray-light contamination is accounted for. We also analyze the dependence of the first two line moments with the magnetic field, showing that the first and second moments can be used to trace the velocity and the magnetic field strength, respectively. This correlation is still maintained for ground-based observations.

  18. Numerical evaluation of welded tube wall profiles from scanned X-ray line source data

    NASA Astrophysics Data System (ADS)

    Lunin, V.; Podobedov, D.; Ewert, U.; Redmer, B.

    2001-04-01

    This investigation presents an iterative algorithm for inversion of X-ray line scanning data of a multi-angle inspection. The main focus is the development of a robust algorithm that may successfully evaluate the influence of local surface geometry in welding regions. An idea here is to repetitively solve the forward problem with iterated profile parameters until the solution agrees with measurement. For accurate parameterization of a particular inner crack, this procedure can be combined with an analysis of the residual image obtained by subtracting the projection image caused by reconstructed surface wall profiles, from the original data.

  19. Stark broadening for diagnostics of the electron density in non-equilibrium plasma utilizing isotope hydrogen alpha lines

    SciTech Connect

    Yang, Lin; Tan, Xiaohua; Wan, Xiang; Chen, Lei; Jin, Dazhi; Qian, Muyang; Li, Gongping

    2014-04-28

    Two Stark broadening parameters including FWHM (full width at half maximum) and FWHA (full width at half area) of isotope hydrogen alpha lines are simultaneously introduced to determine the electron density of a pulsed vacuum arc jet. To estimate the gas temperature, the rotational temperature of the C{sub 2} Swan system is fit to 2500 ± 100 K. A modified Boltzmann-plot method with b{sub i}-factor is introduced to determine the modified electron temperature. The comparison between results of atomic and ionic lines indicates the jet is in partial local thermodynamic equilibrium and the electron temperature is close to 13 000 ± 400 K. Based on the computational results of Gig-Card calculation, a simple and precise interpolation algorithm for the discrete-points tables can be constructed to obtain the traditional n{sub e}-T{sub e} diagnostic maps of two Stark broadening parameters. The results from FWHA formula by the direct use of FWHM = FWHA and these from the diagnostic map are different. It can be attributed to the imprecise FWHA formula form and the deviation between FWHM and FWHA. The variation of the reduced mass pair due to the non-equilibrium effect contributes to the difference of the results derived from two hydrogen isotope alpha lines. Based on the Stark broadening analysis in this work, a corrected method is set up to determine n{sub e} of (1.10 ± 0.08) × 10{sup 21} m{sup −3}, the reference reduced mass μ{sub 0} pair of (3.30 ± 0.82 and 1.65 ± 0.41), and the ion kinetic temperature of 7900 ± 1800 K.

  20. Calculated resonance line profiles of [Mg II], [C II], and [Si IV] in the solar atmosphere

    SciTech Connect

    Avrett, E.; McKillop, S.; Landi, E.

    2013-12-20

    NASA's Interface Region Imaging Spectrograph space mission, launched 2013 June 27, is intended to study the structure of the solar chromosphere and the transition region between the chromosphere and corona. The spectral lines to be observed include the Mg II k line at 2796.5 Å, the C II 1334.5 Å line, and the Si IV line at 1393.8 Å, which are formed in the middle chromosphere, the upper chromosphere, and the lower transition region, respectively. Here we calculate the profiles of these lines from four models of the solar atmosphere, intended to represent the faint and mean internetwork, a network lane, and bright network. We show how the profiles change from the center of the solar disk toward the limb of the Sun and in response to outflows and inflows. These results are intended to cover the range of expected quiet-Sun observations and assist in their interpretation. We expect that the observations will lead to improvements in the models, which can then be used to estimate the required non-radiative heating in the different regions.

  1. Appropriate line profiles for radiation modeling in the detection of atmospheric pollutants

    NASA Technical Reports Server (NTRS)

    Tiwari, S. N.

    1973-01-01

    Absorption by Lorentz, Doppler, and Voight lines are compared for a range of atmospheric parameters. It is found that, for the intermediate path lengths, the use of the combined Lorentz-Doppler (Voight) profile is essential in calculating the atmospheric transmittance. A brief review of band models, to approximate the absorption over certain frequency interval, is presented. Expressions for total radiative energy emergent from the atmosphere are given which, with appropriate line or band models, can be used to reduce the data obtained from radiation measurement by an instrument mounted on an aircraft or a satellite. By employing the inversion procedure, the concentration of atmospheric pollutants can be obtained from the measured data.

  2. Directional pair distribution function for diffraction line profile analysis of atomistic models

    PubMed Central

    Leonardi, Alberto; Leoni, Matteo; Scardi, Paolo

    2013-01-01

    The concept of the directional pair distribution function is proposed to describe line broadening effects in powder patterns calculated from atomistic models of nano-polycrystalline microstructures. The approach provides at the same time a description of the size effect for domains of any shape and a detailed explanation of the strain effect caused by the local atomic displacement. The latter is discussed in terms of different strain types, also accounting for strain field anisotropy and grain boundary effects. The results can in addition be directly read in terms of traditional line profile analysis, such as that based on the Warren–Averbach method. PMID:23396818

  3. Interpretation of center-to-limb profiles of weak Fraunhofer lines

    SciTech Connect

    Kostyk, R.I.

    1981-05-01

    The profiles of weak Fraunhofer lines are calculated under the assumption that the broadening and asymmetry are caused by wave and convective motions. From a comparison of the calculated and observed lines it follows that the material on most of the solar surface is moving in a horizontal direction with a velocity of approx.2.7 km/sec. The velocity of rising motions averages 1.0 km/sec. The granule--intergranule temperature difference is approx.330 /sup 0/K.

  4. Scattering in the atmosphere of Venus. III - Line profiles and phase curves for Rayleigh scattering

    NASA Technical Reports Server (NTRS)

    Young, L. D. G.; Kattawar, G. W.

    1977-01-01

    Spectral line profiles, curves of growth, and curves for the equivalent width of a line as a function of Venus phase angle have been computed for a Rayleigh scattering cloud and compared with those for a cloud of isotropic scatterers. The results are very similar for the two kinds of scattering, with the exception of the curves of equivalent width as a function of Venus phase angle. These latter curves exhibit the 'inverse phase effect' and rule out a scale height of the clouds much less than half the scale height of the gas. The optical depth of the clouds is approximately 100.

  5. Scattering in the atmosphere of Venus. Line profiles and phase curves for Rayleigh scattering

    NASA Technical Reports Server (NTRS)

    Young, L. D. G.; Kattawar, G. W.

    1976-01-01

    Spectral line profiles, curves of growth, and curves for the equivalent width of a line as a function of Venus phase angle are computed for a Rayleigh scattering cloud and compared with those for a cloud of isotropic scatterers. The results are similar for the two kinds of scattering, with the exception for the curves of equivalent width as a function of Venus phase angle. These latter curves exhibit the inverse phase effect and rule out the possibility that the scale height of the clouds can be much less than half the scale height of the gas.

  6. Changes in Gene Expression Profiling of Apoptotic Genes in Neuroblastoma Cell Lines upon Retinoic Acid Treatment

    PubMed Central

    Celay, Jon; Blanco, Idoia; Lázcoz, Paula; Rotinen, Mirja; Castresana, Javier S.; Encío, Ignacio

    2013-01-01

    To determine the effect of retinoic acid (RA) in neuroblastoma we treated RA sensitive neuroblastoma cell lines with 9-cis RA or ATRA for 9 days, or for 5 days followed by absence of RA for another 4 days. Both isomers induced apoptosis and reduced cell density as a result of cell differentiation and/or apoptosis. Flow cytometry revealed that 9-cis RA induced apoptosis more effectively than ATRA. The expression profile of apoptosis and survival pathways was cell line specific and depended on the isomer used. PMID:23650528

  7. Human keratinocyte line HaCaT metabolizes 1alpha-hydroxyvitamin D3 and vitamin D3 to 1alpha,25-dihydroxyvitamin D3 (calcitriol).

    PubMed

    Lehmann, B; Pietzsch, J; Kämpf, A; Meurer, M

    1998-11-01

    Cultured human keratinocytes have the property to hydroxylate exogenous 25-hydroxyvitamin D3 (25OHD3) at the C-1alpha position thus producing 1alpha,25-dihydroxyvitamin D3 (1alpha,25(OH)2D3). In this study we investigated whether keratinocytes can also hydroxylate vitamin D3 and one of its metabolites at the C-25 position. We could demonstrate that HaCaT keratinocytes can metabolize 1alpha-hydroxyvitamin D3 (1alpha-OHD3) and vitamin D3 to 1alpha,25(OH)2D3. Identification of the generated product as 1alpha,25(OH)2D3 was based on its elution pattern in two different high performance liquid chromatography systems, on its specific binding in a calf thymus receptor assay and on its gas chromatography-mass spectrometry characteristics. The hydroxylation of vitamin D3 to 1alpha,25(OH)2D3 was dose- and time-dependent. Bovine serum albumin added up to 1.5% (w/v) to the culture medium greatly increased the hydroxylation rates. These results show that HaCaT cells have the capacity to hydroxylate vitamin D3 at the C-1/25 positions. The generation of endogenous 1alpha,25(OH)2D3 from vitamin D3 within the skin may indicate a novel pathway which is of importance for the regulation of epidermal cell growth and differentiation. PMID:9833978

  8. Transcriptional profiling and assessment of cell lines as in vitro models for mantle cell lymphoma.

    PubMed

    Ek, Sara; Ortega, Eva; Borrebaeck, Carl A K

    2005-02-01

    Mantle cell lymphoma (MCL) is an aggressive malignancy and new treatment modalities must be established to increase patient survival time. In the search for new therapeutic targets, reliable and well-characterised in vitro models are essential. In this study, we have characterised three MCL cell lines (SP53, Granta 519 and NCEB1) in comparison with primary tumours from MCL, follicular lymphomas (FL), a FL cell line (RL), a Burkitt lymphoma cell line (RAJI) and five different B cell populations from healthy individuals. Expression profiling was used to determine the relative expression of >12000 transcripts in these samples, and flow cytometry analysis was performed to establish a phenotypic signature for each of the cell lines. In addition, the cell lines were sequenced, and the frequency of somatic mutations and immunoglobulin (Ig) variable heavy chain (VH) usage were determined. We show by hierarchical clustering that the cell lines retain a genetic signature similar to primary MCL, which readily separated the MCL samples from the other lymphoma cell lines and the FL tumours. Furthermore, the MCL cell lines showed differences in the frequency of VH somatic mutations (0-2.1%). The increased number of mutations in NCEB1, compared to the other MCL cell lines, was in agreement with a decreased expression of CD31, CD44, CXCR5, CCR7 and CCR6. Taken together, our data show that the cell lines are clearly derived from MCL tumours and expressed similar genetic and phenotypic signatures compared to primary tumours, which confirmed their usefulness as in vitro models. PMID:15607370

  9. Enhanced detection of hydraulically active fractures by temperature profiling in lined heated bedrock boreholes

    NASA Astrophysics Data System (ADS)

    Pehme, P. E.; Parker, B. L.; Cherry, J. A.; Molson, J. W.; Greenhouse, J. P.

    2013-03-01

    SummaryThe effectiveness of borehole profiling using a temperature probe for identifying hydraulically active fractures in rock has improved due to the combination of two advances: improved temperature sensors, with resolution on the order of 0.001 °C, and temperature profiling within water inflated flexible impermeable liners used to temporarily seal boreholes from hydraulic cross-connection. The open-hole cross-connection effects dissipate after inflation, so that both the groundwater flow regime and the temperature distribution return to the ambient (background) condition. This paper introduces a third advancement: the use of an electrical heating cable that quickly increases the temperature of the entire static water column within the lined hole and thus places the entire borehole and its immediate vicinity into thermal disequilibrium with the broader rock mass. After heating for 4-6 h, profiling is conducted several times over a 24 h period as the temperature returns to background conditions. This procedure, referred to as the Active Line Source (ALS) method, offers two key improvements over prior methods. First, there is no depth limit for detection of fractures with flow. Second, both identification and qualitative comparison of evidence for ambient groundwater flow in fractures is improved throughout the entire test interval. The benefits of the ALS method are demonstrated by comparing results from two boreholes tested to depths of 90 and 120 m in a dolostone aquifer used for municipal water supply and in which most groundwater flow occurs in fractures. Temperature logging in the lined holes shows many fractures in the heterothermic zone both with and without heating, but only the ALS method shows many hydraulically active fractures in the deeper homothermic portion of the hole. The identification of discrete groundwater flow at many depths is supported by additional evidence concerning fracture occurrence, including continuous core visual inspection

  10. Method for measuring radial impurity emission profiles using correlations of line integrated signals

    SciTech Connect

    Kuldkepp, M.; Brunsell, P.R.; Drake, J.; Menmuir, S.; Rachlew, E.

    2006-04-15

    A method of determining radial impurity emission profiles is outlined. The method uses correlations between line integrated signals and is based on the assumption of cylindrically symmetric fluctuations. Measurements at the reversed field pinch EXTRAP T2R show that emission from impurities expected to be close to the edge is clearly different in raw as well as analyzed data to impurities expected to be more central. Best fitting of experimental data to simulated correlation coefficients yields emission profiles that are remarkably close to emission profiles determined using more conventional techniques. The radial extension of the fluctuations is small enough for the method to be used and bandpass filtered signals indicate that fluctuations below 10 kHz are cylindrically symmetric. The novel method is not sensitive to vessel window attenuation or wall reflections and can therefore complement the standard methods in the impurity emission reconstruction procedure.

  11. Sound speed profile inversion using a horizontal line array in shallow water

    NASA Astrophysics Data System (ADS)

    Li, ZhengLin; He, Li; Zhang, RenHe; Li, FengHua; Yu, YanXin; Lin, Peng

    2015-01-01

    It is better to use a simple configuration to enhance the applicability of ocean environment inversion in shallow water. A matched-field inversion method based on a horizontal line array (HLA) is used to retrieve the variation of sound speed profile. The performance of the inversion method is verified in the South China Sea in June, 2010. An HLA laid at bottom was used to receive signals from a bottom-mounted transducer. Inverted mean sound speed profiles from 9-hour long acoustic signals are in good agreement with measurements from two temperature chains at the sites of the source and receiver. The results show that an HLA can be used to monitor the variability of shallow-water sound speed profile.

  12. A Comparitive Assessement of Cytokine Expression in Human-Derived Cell Lines Exposed to Alpha Particles and X-Rays

    PubMed Central

    Chauhan, Vinita; Howland, Matthew; Wilkins, Ruth

    2012-01-01

    Alpha- (α-) particle radiation exposure has been linked to the development of lung cancer and has been identified as a radiation type likely to be employed in radiological dispersal devices. Currently, there exists a knowledge gap concerning cytokine modulations associated with exposure to α-particles. Bio-plex technology was employed to investigate changes in proinflammatory cytokines in two human-derived cell lines. Cells were irradiated at a dose of 1.5 Gy to either α-particles or X-rays at equivalent dose rates. The two cell lines exhibited a unique pattern of cytokine expression and the response varied with radiation type. Of the 27 cytokines assessed, only vascular endothelin growth factor (VEGF) was observed to be modulated in both cell lines solely after α-particle exposure, and the expression of VEGF was shown to be dose responsive. These results suggest that certain proinflammatory cytokines may be involved in the biological effects related to α- particle exposure and the responses are cell type and radiation type specific. PMID:22619631

  13. A PERVASIVE BROAD COMPONENT IN H I EMISSION LINE PROFILES: TEMPERATURE, TURBULENCE, OR A HELIUM SIGNATURE?

    SciTech Connect

    Verschuur, G. L.; Schmelz, J. T. E-mail: jschmelz@memphis.ed

    2010-06-15

    Gaussian analysis of interstellar neutral hydrogen emission profiles has revealed a pervasive broad component with a width on the order of 34 km s{sup -1}. When present, this component can most readily be identified in high galactic latitude directions where the H I profiles are either intrinsically weak or simple. Examination of published data reveals that this characteristic line width has been found in a variety of other H I features including compact high-velocity clouds, very-high-velocity clouds, and the Magellanic Stream. When its presence is accounted for in the analysis of H I profiles, other families of line widths at 14 and 6 km s{sup -1} are clearly revealed. Possible mechanisms for producing this broad background component are discussed, including temperature, turbulence, and the critical ionization velocity effect. A line width on the order of 34 km s{sup -1} would imply a kinetic temperature of 24,000 K, too high to keep the gas neutral; hence it should not be observed in H I emission spectra. Turbulent motions could explain a pervasive broad component, but not why it always has the same numerical value in various classes of H I emission line features. The critical ionization velocity effect hypothesis is intriguing because 34 km s{sup -1} is the value for helium. Clearly, this could be a coincidence but the other prominent distribution peaks correspond to two families of critical ionization velocities of abundant interstellar elements including C, N, and O (about 14 km s{sup -1}) and metals (about 6 km s{sup -1}). Unfortunately, the mechanism by which this effect operates, even in laboratory situations, is not clearly understood. It is suggested that further investigation of the distribution of H I component line widths by allowing for the existence of a pervasive broad underlying component may cast a clearer light on this intriguing phenomenon.

  14. Fast calculation of the Voight profile absorption line of gas for the atmospheric transmission function determination

    NASA Astrophysics Data System (ADS)

    Chayanova, Eleonora A.; Ivanovsky, A. I.; Borisov, Yury A.; Glazkov, V. N.; Bankova, T. V.

    2004-01-01

    A fast method is offered for calculation of Voight spectral absorption line contour. A line profile is represented by a sum of terms of an absolutely converging series, containing undimensioned parameters a and b, connected with a property of the absorbing molecule, atmospheric temperature and pressure. The value b changes in a large limit from zero at the line center to 1000 and more at far wing of the line. The value a, describing a ratio of the Lorenz and Doppler effects, changes from a value ~5 near the surface of the Earth to 10-5 in the stratosphere. Twenty terms of series ensure the high accuracy of the approximation for values b ranging from 0 to 5. The deviation from accurate Voight contour formula is less than 4*10-4 or 0.04%. However, a large b value implies increase the number of terms, and the computing time increases accordingly. Numerical integration of Voight formula by Gauss-Hermite quadrature is simple, fast and accurate calculation for a value b> 5. In this case the deviation from accurate Voight formula is less than 2*10-5 or 0.002%. Using the proposed approximation of the Voight profile line, the atmospheric transmission function was computed for the path Sun- satellite represented as a net of tangent heights relative to the Earth"s surface up to 100 km with 1 km step. The computation method involves 29 spectral channels of the water absorption region (933-959 nm) and 14 channels of the molecular oxygen absorption region (758-771 nm). The computations were performed for certain profiles of H2O, O2, temperature and pressure. The computations results were compared with experimental data.

  15. Alpha2-adrenoreceptors profile modulation. 3.1 (R)-(+)-m-nitrobiphenyline, a new efficient and alpha2C-subtype selective agonist.

    PubMed

    Crassous, Pierre-Antoine; Cardinaletti, Claudia; Carrieri, Antonio; Bruni, Bruno; Di Vaira, Massimo; Gentili, Francesco; Ghelfi, Francesca; Giannella, Mario; Paris, Hervé; Piergentili, Alessandro; Quaglia, Wilma; Schaak, Stéphane; Vesprini, Cristian; Pigini, Maria

    2007-08-01

    To assess the stereochemical requirements for efficient alpha2C-adrenoreceptor activation, the enantiomeric forms of m-nitrobiphenyline [(+/-)-5] were prepared and tested on cells expressing the human alpha2-adrenoreceptor subtypes. The importance of chirality was confirmed, since the enantiomer (R)-(+)-5 was much more efficient than (S)-(-)-5 in producing alpha2C-activation. Surprising reversal of enantioselectivity was observed with respect to structurally similar biphenyline [(+/-)-1] whose (S)-(-)-form proved the preferred alpha2C-configuration. PMID:17630725

  16. First evidence of non-Gaussian solar flare EUV spectral line profiles and accelerated non-thermal ion motion

    NASA Astrophysics Data System (ADS)

    Jeffrey, Natasha L. S.; Fletcher, Lyndsay; Labrosse, Nicolas

    2016-05-01

    Context. The properties of solar flare plasma can be determined from the observation of optically thin lines. The emitting ion distribution determines the shape of the spectral line profile, with an isothermal Maxwellian ion distribution producing a Gaussian profile. Non-Gaussian line profiles may indicate more complex ion distributions. Aims: We investigate the possibility of determining flare-accelerated non-thermal ion and/or plasma velocity distributions. Methods: We study EUV spectral lines produced during a flare SOL2013-05-15T01:45 using the Hinode EUV Imaging Spectrometer (EIS). The flare is located close to the eastern solar limb with an extended loop structure, allowing the different flare features: ribbons, hard X-ray (HXR) footpoints and the loop-top source to be clearly observed in UV, EUV and X-rays. EUV line spectroscopy is performed in seven different regions covering the flare. We study the line profiles of the isolated and unblended Fe XVI lines (λ262.9760 Å ) mainly formed at temperatures of ~2 to 4 MK. Suitable Fe XVI line profiles at one time close to the peak soft X-ray emission and free of directed mass motions are examined using: 1. a higher moments analysis, 2. Gaussian fitting, and 3. by fitting a kappa distribution line profile convolved with a Gaussian to account for the EIS instrumental profile. Results: Fe XVI line profiles in the flaring loop-top, HXR footpoint and ribbon regions can be confidently fitted with a kappa line profile with an extra variable κ, giving low, non-thermal κ values between 2 and 3.3. An independent higher moments analysis also finds that many of the spectral line kurtosis values are higher than the Gaussian value of 3, even with the presence of a broad Gaussian instrumental profile. Conclusions: A flare-accelerated non-thermal ion population could account for both the observed non-Gaussian line profiles, and for the Fe XVI "excess" broadening found from Gaussian fitting, if the emitting ions are interacting

  17. Anti-lymphoproliferative activity of alpha-2-macroglobulin in the plasma of hibernating 13-lined ground squirrels and woodchucks.

    PubMed

    Sieckmann, Donna G; Jaffe, Howard; Golech, Susanne; Cai, DeCheng; Hallenbeck, John M; McCarron, Richard M

    2014-09-15

    Plasma from hibernating (HIB) woodchucks (Marmota monax) or 13-lined ground squirrels (Ictidomys tridecemlineatus) suppressed (3)H-thymidine uptake in mouse spleen cell cultures stimulated with Concanavalin A (ConA); plasma from non-hibernating animals were only slightly inhibitory. Maximum inhibition occurred when HIB plasma was added to the cultures prior to ConA. After HPLC size exclusion chromatography of the HIB ground squirrel plasma, a single fraction (fraction-14) demonstrated inhibitory activity. Assay of fraction-14 from 8 HIB squirrels showed inhibition ranging from 13 to 95%; inhibition was correlated to the time the squirrels were exposed to cold prior to hibernation. Western blot analysis showed the factor to be a large molecular weight protein (>300 kDa), and mass spectrometry identified sequences that were 100% homologous with alpha-2-macroglobulin from humans and other species. These findings indicate a hibernation-related protein that may be responsible for immune system down regulation. PMID:25113962

  18. A comparative study of SG-HMXBS and SFXTS using iron K-alpha line as a tracer

    NASA Astrophysics Data System (ADS)

    Pradhan, Pragati; Paul, Biswajit; Bozzo, Enrico

    2016-07-01

    We present a comparative study of classical supergiant HMXB and SFXT systems by making a detailed study of the variation of the equivalent width of iron k-alpha line with the absorption column density using out-of-eclipse observations from Suzaku, XMM, and Chandra (and taking care not to mix observations in different spectral states). Analysis of the entire archival Suzaku observations of these systems show that the equivalent width of SFXTs is significantly smaller compared to those of classical supergiant HMXBs even when the hydrogen column density of both are comparable. We discuss the results of the analysis in the light of two theories on SFXTS: the clumpy wind and the magnetic gating model. The findings are also used to make a comparison between these two systems as a class.

  19. Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines.

    PubMed

    Campbell, James; Ryan, Colm J; Brough, Rachel; Bajrami, Ilirjana; Pemberton, Helen N; Chong, Irene Y; Costa-Cabral, Sara; Frankum, Jessica; Gulati, Aditi; Holme, Harriet; Miller, Rowan; Postel-Vinay, Sophie; Rafiq, Rumana; Wei, Wenbin; Williamson, Chris T; Quigley, David A; Tym, Joe; Al-Lazikani, Bissan; Fenton, Timothy; Natrajan, Rachael; Strauss, Sandra J; Ashworth, Alan; Lord, Christopher J

    2016-03-15

    One approach to identifying cancer-specific vulnerabilities and therapeutic targets is to profile genetic dependencies in cancer cell lines. Here, we describe data from a series of siRNA screens that identify the kinase genetic dependencies in 117 cancer cell lines from ten cancer types. By integrating the siRNA screen data with molecular profiling data, including exome sequencing data, we show how vulnerabilities/genetic dependencies that are associated with mutations in specific cancer driver genes can be identified. By integrating additional data sets into this analysis, including protein-protein interaction data, we also demonstrate that the genetic dependencies associated with many cancer driver genes form dense connections on functional interaction networks. We demonstrate the utility of this resource by using it to predict the drug sensitivity of genetically or histologically defined subsets of tumor cell lines, including an increased sensitivity of osteosarcoma cell lines to FGFR inhibitors and SMAD4 mutant tumor cells to mitotic inhibitors. PMID:26947069

  20. The implementation of non-Voigt line profiles in the HITRAN database: H2 case study

    NASA Astrophysics Data System (ADS)

    Wcisło, P.; Gordon, I. E.; Tran, H.; Tan, Y.; Hu, S.-M.; Campargue, A.; Kassi, S.; Romanini, D.; Hill, C.; Kochanov, R. V.; Rothman, L. S.

    2016-07-01

    Experimental capabilities of molecular spectroscopy and its applications nowadays require a sub-percent or even sub-per mille accuracy of the representation of the shapes of molecular transitions. This implies the necessity of using more advanced line-shape models which are characterized by many more parameters than a simple Voigt profile. It is a great challenge for modern molecular spectral databases to store and maintain the extended set of line-shape parameters as well as their temperature dependences. It is even more challenging to reliably retrieve these parameters from experimental spectra over a large range of pressures and temperatures. In this paper we address this problem starting from the case of the H2 molecule for which the non-Voigt line-shape effects are exceptionally pronounced. For this purpose we reanalyzed the experimental data reported in the literature. In particular, we performed detailed line-shape analysis of high-quality spectra obtained with cavity-enhanced techniques. We also report the first high-quality cavity-enhanced measurement of the H2 fundamental vibrational mode. We develop a correction to the Hartmann-Tran profile (HTP) which adjusts the HTP to the particular model of the velocity-changing collisions. This allows the measured spectra to be better represented over a wide range of pressures. The problem of storing the HTP parameters in the HITRAN database together with their temperature dependences is also discussed.

  1. P Cygni profiles in zeta Ophiuchi and zeta Puppis. [far UV absorption lines

    NASA Technical Reports Server (NTRS)

    Morton, D. C.

    1976-01-01

    Detailed P Cygni profiles are plotted using data from selected regions of the far-UV spectra of zeta OPh and zeta Pup obtained by the Copernicus satellite. Equivalent widths and velocity shifts of both emission and absorption features are also presented. For zeta Oph, it is found that only the C IV and N V resonance lines exhibit the P Cygni phenomenon; for zeta Pup, the resonance lines of C III, N III, Si IV, C IV, P V, S VI, N V, and O VI all show strong P Cygni lines, although the emission component seems to be absent in N III. For both stars, it is shown that parts of most absorption profiles exceed the escape velocity, indicating mass ejection. The short-wavelength edges of the resonance lines are found to average about -1590 km/s in zeta Oph and about -2660 km/s in zeta Pup, with no significant dependence on ionization potential. It is noted that the equivalent width of the emission component is always considerably less than that of the absorption component, suggesting that absorption occurs close to the stellar surface.

  2. Berry phases and profiles of line wings and rainbow satellites induced by optical collisions

    NASA Astrophysics Data System (ADS)

    Ciuryło, R.; Szudy, J.; Baylis, W. E.

    2015-09-01

    The concept of Berry phase is included in an analysis of the intensity distribution in far wings of pressure-broadened spectral lines emitted or absorbed by atoms placed in an external cone-rotating electric field. Particular attention is focused on frequency regions where rainbow satellite bands appear. A classical-path treatment that employs the time-dependent Schrödinger equation is used to derive an expression for the line shape, and it uses a dipole transition moment calculated with quasimolecular wave functions given by the Berry version of the adiabatic approximation. It is found that in the presence of an external rotating electric field, the intensity distribution in far wings can be expressed in terms of the universal line shape function of the unified Franck-Condon theory once energy shifts due to Stark and Berry effects are taken into account. We show that the influence of Berry phase in the profiles of the far wings can be manifested either in the form of deviations of observed profiles from the quasistatic distribution or the appearance of additional features in the vicinity of the maximum of the rainbow satellite band. As an example, the modification of the rainbow satellite at 162.3 nm in the red wing of the self-broadened Lyman-α line of hydrogen, caused by an external rotating electric field, is considered.

  3. Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines

    PubMed Central

    Campbell, James; Ryan, Colm J.; Brough, Rachel; Bajrami, Ilirjana; Pemberton, Helen N.; Chong, Irene Y.; Costa-Cabral, Sara; Frankum, Jessica; Gulati, Aditi; Holme, Harriet; Miller, Rowan; Postel-Vinay, Sophie; Rafiq, Rumana; Wei, Wenbin; Williamson, Chris T.; Quigley, David A.; Tym, Joe; Al-Lazikani, Bissan; Fenton, Timothy; Natrajan, Rachael; Strauss, Sandra J.; Ashworth, Alan; Lord, Christopher J.

    2016-01-01

    Summary One approach to identifying cancer-specific vulnerabilities and therapeutic targets is to profile genetic dependencies in cancer cell lines. Here, we describe data from a series of siRNA screens that identify the kinase genetic dependencies in 117 cancer cell lines from ten cancer types. By integrating the siRNA screen data with molecular profiling data, including exome sequencing data, we show how vulnerabilities/genetic dependencies that are associated with mutations in specific cancer driver genes can be identified. By integrating additional data sets into this analysis, including protein-protein interaction data, we also demonstrate that the genetic dependencies associated with many cancer driver genes form dense connections on functional interaction networks. We demonstrate the utility of this resource by using it to predict the drug sensitivity of genetically or histologically defined subsets of tumor cell lines, including an increased sensitivity of osteosarcoma cell lines to FGFR inhibitors and SMAD4 mutant tumor cells to mitotic inhibitors. PMID:26947069

  4. A bipolar outflow of ionized gas in K3-50A: H76 alpha radio recombination line and continuum observations of K3-50

    NASA Technical Reports Server (NTRS)

    Depree, C. G.; Goss, W. M.; Palmer, Patrick; Rubin, Robert H.

    1994-01-01

    The H II regions near K3-50 (G70.3 + 1.6) have been imaged at high angular resolution (approximately 1 sec .3) in the continuum and the recombination lines H76(sub alpha and He76(sub alpha) using the Very Large Array (VLA). The helium line is detected in only the brightest component K3-50A while the hydrogen line is detected in three components (K3-50A, B and C1). K3-50A shows a pronounced velocity gradient of approximately 150 km/sec/pc along its major axis (P.A. = 160 deg); in addition a wide range of line widths are observed, from 20 to 65 km/sec. Kinematics from the line data and the morphology of the continuum emission suggest that the ionized material associated with K3-50A is undergoing a high-velocity bipolar outflow.

  5. Generation and gene expression profiling of 48 transcription-factor-inducible mouse embryonic stem cell lines

    PubMed Central

    Yamamizu, Kohei; Sharov, Alexei A.; Piao, Yulan; Amano, Misa; Yu, Hong; Nishiyama, Akira; Dudekula, Dawood B.; Schlessinger, David; Ko, Minoru S. H.

    2016-01-01

    Mouse embryonic stem cells (ESCs) can differentiate into a wide range – and possibly all cell types in vitro, and thus provide an ideal platform to study systematically the action of transcription factors (TFs) in cell differentiation. Previously, we have generated and analyzed 137 TF-inducible mouse ESC lines. As an extension of this “NIA Mouse ESC Bank,” we generated and characterized 48 additional mouse ESC lines, in which single TFs in each line could be induced in a doxycycline-controllable manner. Together, with the previous ESC lines, the bank now comprises 185 TF-manipulable ESC lines (>10% of all mouse TFs). Global gene expression (transcriptome) profiling revealed that the induction of individual TFs in mouse ESCs for 48 hours shifts their transcriptomes toward specific differentiation fates (e.g., neural lineages by Myt1 Isl1, and St18; mesodermal lineages by Pitx1, Pitx2, Barhl2, and Lmx1a; white blood cells by Myb, Etv2, and Tbx6, and ovary by Pitx1, Pitx2, and Dmrtc2). These data also provide and lists of inferred target genes of each TF and possible functions of these TFs. The results demonstrate the utility of mouse ESC lines and their transcriptome data for understanding the mechanism of cell differentiation and the function of TFs. PMID:27150017

  6. OBSERVATIONAL EVIDENCE FOR A CORRELATION BETWEEN MACROTURBULENT BROADENING AND LINE-PROFILE VARIATIONS IN OB SUPERGIANTS

    SciTech Connect

    Simon-Diaz, S.; Herrero, A.; Castro, N.; Uytterhoeven, K.; Puls, J.

    2010-09-10

    The spectra of O and B supergiants (Sgs) are known to be affected by a significant form of extra line broadening (usually referred to as macroturbulence) in addition to that produced by stellar rotation. Recent analyses of high-resolution spectra have shown that the interpretation of this line broadening as a consequence of large-scale turbulent motions would imply highly supersonic velocity fields in photospheric regions, making this scenario quite improbable. Stellar oscillations have been proposed as a likely alternative explanation. As part of a long-term observational project, we are investigating the macroturbulent broadening in O and B Sgs and its possible connection with spectroscopic variability phenomena and stellar oscillations. In this Letter, we present the first encouraging results of our project, namely, firm observational evidence for a strong correlation between the extra broadening and photospheric line-profile variations in a sample of 13 Sgs with spectral types ranging from O9.5 to B8.

  7. On the line profiles in the spectra of the zodiacal light.

    NASA Astrophysics Data System (ADS)

    Clarke, D.; Matthews, S. A.; Mundell, C. G.; Weir, A. S.

    1996-04-01

    The model proposed by Hong (1985) describing the surface brightness variation with elongation of the Zodiacal Light has been applied to predict the spectral line profiles produced by Doppler effects associated with scattering from interplanetary dust for the simple case of prograde Keplerian orbits. Over the greater elongation range, the predictions are substantially the same as for previous models but with shallower line depths and more pronounced asymmetries. At elongations ~30deg and less, however, Hong's mixture of phase angle scattering functions predicts bifurcation of the lines so providing an alternative explanation to the two dust stream model of Beavers et al. (1980) proposed as the interpretation of their spectra of the F corona. The work also highlights a general problem of using radial velocity correlation masks for investigations of Zodiacal Light spectra.

  8. Obtaining the real profile of self-absorbed copper spectral line by regularization method

    NASA Astrophysics Data System (ADS)

    Vučeljić, M.; Brajović, S.; Šćepanović, M.; Mijović, S.

    2016-03-01

    Spectroscopic methods, as non-invasive, offer many possibilities to diagnose plasmas in the laboratory and in the space. Spectral line shapes carry information about plasma characteristics and deriving these parameters of line shapes with sufficient accuracy is the primary task in this work. The intrinsic problem in these methods is, the derivation of plasma characteristics from the measured spectrum: a characteristic of plasma plays a role of "cause", and the observed data-"effect". Therefore, to obtain the characteristic from the experimental data is an inverse and ill posed problem from the point of mathematical physics. The spectroscopic studies of the low voltage DC arc, used for excitation of free-burning cuprum-vapor plasmas at atmospheric pressure, were conducted. The true profile of Cu I 324.754 nm, self-absorbed spectral line, was obtained by deconvolution from experimental results by Tikhonov regularization method. Accuracy, reproducibility and limitation of the method were analyzed. Satisfactory results are obtained.

  9. Single Cell Profiling of Circulating Tumor Cells: Transcriptional Heterogeneity and Diversity from Breast Cancer Cell Lines

    PubMed Central

    Coram, Marc A.; Reddy, Anupama; Deng, Glenn; Telli, Melinda L.; Advani, Ranjana H.; Carlson, Robert W.; Mollick, Joseph A.; Sheth, Shruti; Kurian, Allison W.; Ford, James M.; Stockdale, Frank E.; Quake, Stephen R.; Pease, R. Fabian; Mindrinos, Michael N.; Bhanot, Gyan; Dairkee, Shanaz H.; Davis, Ronald W.; Jeffrey, Stefanie S.

    2012-01-01

    Background To improve cancer therapy, it is critical to target metastasizing cells. Circulating tumor cells (CTCs) are rare cells found in the blood of patients with solid tumors and may play a key role in cancer dissemination. Uncovering CTC phenotypes offers a potential avenue to inform treatment. However, CTC transcriptional profiling is limited by leukocyte contamination; an approach to surmount this problem is single cell analysis. Here we demonstrate feasibility of performing high dimensional single CTC profiling, providing early insight into CTC heterogeneity and allowing comparisons to breast cancer cell lines widely used for drug discovery. Methodology/Principal Findings We purified CTCs using the MagSweeper, an immunomagnetic enrichment device that isolates live tumor cells from unfractionated blood. CTCs that met stringent criteria for further analysis were obtained from 70% (14/20) of primary and 70% (21/30) of metastatic breast cancer patients; none were captured from patients with non-epithelial cancer (n = 20) or healthy subjects (n = 25). Microfluidic-based single cell transcriptional profiling of 87 cancer-associated and reference genes showed heterogeneity among individual CTCs, separating them into two major subgroups, based on 31 highly expressed genes. In contrast, single cells from seven breast cancer cell lines were tightly clustered together by sample ID and ER status. CTC profiles were distinct from those of cancer cell lines, questioning the suitability of such lines for drug discovery efforts for late stage cancer therapy. Conclusions/Significance For the first time, we directly measured high dimensional gene expression in individual CTCs without the common practice of pooling such cells. Elevated transcript levels of genes associated with metastasis NPTN, S100A4, S100A9, and with epithelial mesenchymal transition: VIM, TGFß1, ZEB2, FOXC1, CXCR4, were striking compared to cell lines. Our findings demonstrate that profiling CTCs

  10. Identification of circadian-related gene expression profiles in entrained breast cancer cell lines.

    PubMed

    Gutiérrez-Monreal, Miguel A; Treviño, Victor; Moreno-Cuevas, Jorge E; Scott, Sean-Patrick

    2016-01-01

    Cancer cells have broken circadian clocks when compared to their normal tissue counterparts. Moreover, it has been shown in breast cancer that disruption of common circadian oscillations is associated with a more negative prognosis. Numerous studies, focused on canonical circadian genes in breast cancer cell lines, have suggested that there are no mRNA circadian-like oscillations. Nevertheless, cancer cell lines have not been extensively characterized and it is unknown to what extent the circadian oscillations are disrupted. We have chosen representative non-cancerous and cancerous breast cell lines (MCF-10A, MCF-7, ZR-75-30, MDA-MB-231 and HCC-1954) in order to determine the degree to which the circadian clock is damaged. We used serum shock to synchronize the circadian clocks in culture. Our aim was to initially observe the time course of gene expression using cDNA microarrays in the non-cancerous MCF-10A and the cancerous MCF-7 cells for screening and then to characterize specific genes in other cell lines. We used a cosine function to select highly correlated profiles. Some of the identified genes were validated by quantitative polymerase chain reaction (qPCR) and further evaluated in the other breast cancer cell lines. Interestingly, we observed that breast cancer and non-cancerous cultured cells are able to generate specific circadian expression profiles in response to the serum shock. The rhythmic genes, suggested via microarray and measured in each particular subtype, suggest that each breast cancer cell type responds differently to the circadian synchronization. Future results could identify circadian-like genes that are altered in breast cancer and non-cancerous cells, which can be used to propose novel treatments. Breast cell lines are potential models for in vitro studies of circadian clocks and clock-controlled pathways. PMID:27010605

  11. Expression of HNFs and C/EBP alpha is correlated with immunocytochemical differentiation of cell lines derived from human hepatocellular carcinomas, hepatoblastomas and immortalized hepatocytes.

    PubMed

    Ishiyama, Tadashi; Kano, Junko; Minami, Yuko; Iijima, Tatsuo; Morishita, Yukio; Noguchi, Masayuki

    2003-09-01

    Objective assessment of the differentiation grade of hepatocellular carcinomas (HCCs) is important for evaluation of the pathological diagnosis, prognosis and therapeutic treatment. Differentiation of hepatocytes is reflected by their expression of hepatic functional proteins in the mouse embryo, and liver-enriched transcription factors (LETFs) have been shown to regulate hepatic functional genes strictly. Previous reports demonstrated that the level of LETF expression is altered in HCC or preneoplastic nodules compared with noncancerous tissues. Therefore, LETF expression levels might be useful as a measure of HCC maturation. In this study, to clarify the correlation between the expression of LETFs and the differentiation grade of HCCs, we performed a quantitative analysis of the mRNA expressions of HNFs and C/EBP alpha using real-time reverse-transcription PCR and immunocytochemical analysis for hepatic functional proteins in twelve cell lines. Furthermore, we examined orthotopic transplantations of the HCC cell lines in C.B-17/Icrj-scid/scid mice and characterized the histologic and cytologic differentiation of the tumors that developed. Our results showed that comprehensive expressions of HNF-3beta, HNF-4 alpha, HNF-1 alpha, and C/EBP alpha were specific to HCCs with well-differentiated function and morphology. Furthermore, among these four transcription factors, HNF-4 alpha and HNF-1 alpha expressions showed synchronism and had a close relation with HCC differentiation. These in vitro results were confirmed in tumors developed in SCID mice in vivo. These findings suggested that HNF-4 alpha and HNF-1 alpha are useful markers to assess the degree of HCC differentiation, which we suggest could be evaluated objectively by the quantitative analysis of HNFs and C/EBP alpha in HCCs. PMID:12967472

  12. Magnetic field, chemical composition and line profile variability of the peculiar eclipsing binary star AR Aur

    NASA Astrophysics Data System (ADS)

    Folsom, C. P.; Kochukhov, O.; Wade, G. A.; Silvester, J.; Bagnulo, S.

    2010-10-01

    AR Aur is the only eclipsing binary known to contain a HgMn star, making it an ideal case for a detailed study of the HgMn phenomenon. HgMn stars are a poorly understood class of chemically peculiar stars, which have traditionally been thought not to possess significant magnetic fields. However, the recent discovery of line profile variability in some HgMn stars, apparently attributable to surface abundance patches, has brought this belief into question. In this paper we investigate the chemical abundances, line profile variability, and magnetic field of the primary and secondary of the AR Aur system, using a series of high-resolution spectropolarimetric observations. We find the primary is indeed a HgMn star, and present the most precise abundances yet determined for this star. We find the secondary is a weak Am star, and is possibly still on the pre-main sequence. Line profile variability was observed in a range of lines in the primary, and is attributed to inhomogeneous surface distributions of some elements. No magnetic field was detected in any observation of either stars, with an upper limit on the longitudinal magnetic field in both stars of 100 G. Modelling of the phase-resolve longitudinal field measurements leads to a 3σ upper limit on any dipole surface magnetic field of about 400 G. Based on observations obtained at the Canada-France-Hawaii Telescope (CFHT) which is operated by the National Research Council of Canada, the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique of France and the University of Hawaii. Also based on observations obtained at the Bernard Lyot Telescope (TBL, Pic du Midi, France) of the Midi-Pyrénées Observatory, which is operated by the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique of France. E-mail: cpf@arm.ac.uk

  13. Profiles of alpha-melanocyte-stimulating hormone in the Japanese flounder as revealed by a newly developed time-resolved fluoroimmunoassay and immunohistochemistry.

    PubMed

    Amiya, Noriko; Amano, Masafumi; Takahashi, Akiyoshi; Yamanome, Takeshi; Yamamori, Kunio

    2007-03-01

    Profiles of alpha-melanocyte-stimulating hormone (alpha-MSH) in the Japanese flounder were examined by a newly developed time-resolved fluoroimmunoassay (TR-FIA) and immunohistochemistry. A TR-FIA for alpha-MSH was newly developed, and its levels in the pituitary gland and plasma of Japanese flounder reared in a white or black tank for 5 months were compared. A competitive assay using two antibodies was performed among secondary antibodies in the solid phase, alpha-MSH antibodies, samples, and europium-labeled Des-Ac-alpha-MSH. The sensitivity of the assay, defined as twice the standard deviation at a zero dose, was 0.98 ng/ml (49 pg/well). The intra- and interassay coefficients of variation of the assay were 8.8% (n=8) and 17.3% (n=5), respectively, at about 50% binding. Cross-reactivities of Des-Ac-alpha-MSH and Di-Ac-alpha-MSH were about 100%. Cross-reactivities of adrenocorticotropic hormone, salmon gonadotropin-releasing hormone (sGnRH), and chicken GnRH-II were less than 0.2%, and that of melanin-concentrating hormone was less than 2.0% at 50% binding. Displacement curves of serially twofold-diluted hypothalamus extract, pituitary gland extract, and plasma extract of Japanese flounder with the assay buffer were parallel to the alpha-MSH standard curve. Moreover, displacement curves of serially twofold-diluted hypothalamus and/or pituitary gland extract of masu salmon, goldfish, red seabream, Japanese eel, tiger puffer, and barfin flounder with the assay buffer were also parallel to the alpha-MSH standard. In Japanese flounder, total immunoreactive (ir)-alpha-MSH levels in the pituitary gland were lower in the black tank, whereas those in the plasma tended to be higher in the black tank, suggesting that the synthesis and release of alpha-MSH are higher in the black tank. alpha-MSH-ir cells were detected in the pars intermedia and a small part of the pars distalis of the pituitary gland. alpha-MSH-ir cell bodies were located in the basal hypothalamus and alpha

  14. High-resolution spectroscopy for Cepheids distance determination. IV. Time series of Hα line profiles

    NASA Astrophysics Data System (ADS)

    Nardetto, N.; Groh, J. H.; Kraus, S.; Millour, F.; Gillet, D.

    2008-10-01

    Context: In recent years, infrared interferometry has revealed the presence of faint dusty circumstellar envelopes (CSE) around Cepheids. However the size, shape, chemical nature, and the interaction of the CSE with the star itself are still under investigation. The presence of a CSE might have an effect on the angular diameter estimates used in the interferometric Baade-Wesselink and surface-brightness methods of determining the distance of Cepheids. Aims: By studying Hα profiles as a function of the period, we investigate the permanent mass loss and the CSE around Cepheids. Our high spectral- and time-resolution data, combined with a very good S/N, will be useful in constraining future hydrodynamical models of Cepheids atmosphere and their close environment. Methods: We present HARPS (High Accuracy Radial velocity Planetary Search project developed by the European Southern Observatory.) high-resolution spectroscopy (R = 120 000) of eight galactic Cepheids: R Tra, S Cru, Y Sgr, β Dor, zeta Gem, RZ Vel, ell Car, and RS Pup, providing a good period sampling (P = 3.39 d to P = 41.52 d). The Hα line profiles are described for all stars using a 2D (wavelength versus pulsation phase) representation. For each star, an average spectral line profile is derived, together with its first moment (γ-velocity) and its asymmetry (γ-asymmetry). Results: Short-period Cepheids show Hα line profiles following the pulsating envelope of the star, while long-period Cepheids show very complex line profiles and, in particular, large asymmetries. We find a new relationship between the period of Cepheids and their γ-velocities and -asymmetries. These results may be related to the dynamical structure of the atmosphere and to a permanent mass loss of Cepheids. In particular, we confirm for ell Car a dominant absorption component whose velocity is constant and nearly of zero km s-1 in the stellar rest frame. This component is attributed to the presence of circumstellar envelope

  15. Targeted Biomarker Discovery by High Throughput Glycosylation Profiling of Human Plasma Alpha1-Antitrypsin and Immunoglobulin A

    PubMed Central

    Ruhaak, L. Renee; Koeleman, Carolien A. M.; Uh, Hae-Won; Stam, Jord C.; van Heemst, Diana; Maier, Andrea B.; Houwing-Duistermaat, Jeanine J.; Hensbergen, Paul J.; Slagboom, P. Eline; Deelder, André M.; Wuhrer, Manfred

    2013-01-01

    Protein N-glycosylation patterns are known to show vast genetic as well as physiological and pathological variation and represent a large pool of potential biomarkers. Large-scale studies are needed for the identification and validation of biomarkers, and the analytical techniques required have recently been developed. Such methods have up to now mainly been applied to complex mixtures of glycoproteins in biofluids (e.g. plasma). Here, we analyzed N-glycosylation profiles of alpha1-antitrypsin (AAT) and immunoglobulin A (IgA) enriched fractions by 96-well microtitration plate based high-throughput immuno-affinity capturing and N-glycan analysis using multiplexed capillary gel electrophoresis with laser-induced fluorescence detection (CGE-LIF). Human plasma samples were from the Leiden Longevity Study comprising 2415 participants of different chronological and biological ages. Glycosylation patterns of AAT enriched fractions were found to be associated with chronological (calendar) age and they differed between females and males. Moreover, several glycans in the AAT enriched fraction were associated with physiological parameters marking cardiovascular and metabolic diseases. Pronounced differences were found between males and females in the glycosylation profiles of IgA enriched fractions. Our results demonstrate that large-scale immuno-affinity capturing of proteins from human plasma using a bead-based method combined with high-throughput N-glycan analysis is a powerful tool for the discovery of glycosylation-based biomarker candidates. PMID:24039863

  16. Low-temperature oxygen diffusion in alpha titanium characterized by Auger-sputter profiling

    SciTech Connect

    Wittberg, T.N.; Wolf, J.D.; Keil, R.G.; Wang, P.S.

    1982-01-01

    Anodic TiO/sub 2/ films were grown on titanium foils under galvanostatic conditions at 20 mA/cm/sup 2/ in an aqueous saturated solution of ammonium tetraborate. The samples were then heat treated at temperatures between 450 and 550/sup 0/C and changes in the profile of oxygen concentration as a function of depth were monitored using AES. The oxygen diffusivities were calculated from the Boltzmann-Matano method and compared with those obtained using an analytical solution to Fick's Second Law. The activation energy for oxygen diffusion in this temperature range was then calculated to be 28 kcal/mole. 5 figures, 1 table.

  17. Fermi acceleration of Lyman-alpha photons by shocks

    NASA Technical Reports Server (NTRS)

    Neufeld, David A.; Mckee, Christopher F.

    1988-01-01

    The repeated scattering of Ly-alpha radiation across a shock front results in a systematic blueshift which may greatly exceed the shock velocity vs and is proportional to cube root of (Nvs), where N is the column density of hydrogen atoms on either side of the shock front. The blueshifting process is similar to the Fermi acceleration of cosmic rays and may be responsible for the blue asymmetric line profiles that have been observed in high-redshift Ly-alpha galaxies. The Ly-alpha line profile in 3C 326.1 is accounted for by a model in which shocks, driven into a population of interstellar clouds by a radio lobe, trigger the formation of ionizing stars and Fermi accelerate the Ly-alpha radiation emitted by H II regions surrounding those stars. Galaxy mergers, particularly between galaxies with low dust content, should produce Ly-alpha lines with strong blue wings.

  18. Transcriptional profiling in an MPNST-derived cell line and normal human Schwann cells

    PubMed Central

    LEE, PHILIP R.; COHEN, JONATHAN E.; TENDI, ELISABETTA A.; FARRER, ROBERT; DE VRIES, GEORGE H.; BECKER, KEVIN G.; FIELDS, R. DOUGLAS

    2005-01-01

    cDNA microarrays were utilized to identify abnormally expressed genes in a malignant peripheral nerve sheath tumor (MPNST)-derived cell line, T265, by comparing the mRNA abundance profiles with that of normal human Schwann cells (nhSCs). The findings characterize the molecular phenotype of this important cell-line model of MPNSTs, and elucidate the contribution of Schwann cells in MPNSTs. In total, 4608 cDNA sequences were screened and hybridizations replicated on custom cDNA microarrays. In order to verify the microarray data, a large selection of differentially expressed mRNA transcripts were subjected to semi-quantitative reverse transcription PCR (LightCycler). Western blotting was performed to investigate a selection of genes and signal transduction pathways, as a further validation of the microarray data. The data generated from multiple microarray screens, semi-quantitative RT–PCR and Western blotting are in broad agreement. This study represents a comprehensive gene-expression analysis of an MPNST-derived cell line and the first comprehensive global mRNA profile of nhSCs in culture. This study has identified ~900 genes that are expressed abnormally in the T265 cell line and detected many genes not previously reported to be expressed in nhSCs. The results provide crucial information on the T265 cells that is essential for investigation using this cell line in experimental studies in neurofibromatosis type I (NF1), and important information on normal human Schwann cells that is applicable to a wide range of studies on Schwann cells in cell culture. PMID:16429615

  19. THE EVOLUTION OF MOLECULAR LINE PROFILES INDUCED BY THE PROPAGATION OF C-SHOCK WAVES

    SciTech Connect

    Jimenez-Serra, I.; Caselli, P.; Martin-Pintado, J.; RodrIguez-Franco, A.; Viti, S. E-mail: P.Caselli@leeds.ac.uk E-mail: arturo@damir.iem.csic.es

    2009-04-10

    We present the first results of the expected variations of the molecular line emission arising from material recently affected by C-shocks (shock precursors). Our parametric model of the structure of C-shocks has been coupled with a radiative transfer code to calculate the molecular excitation and line profiles of shock tracers such as SiO, and of ion and neutral molecules such as H{sup 13}CO{sup +} and HN{sup 13}C, as the shock propagates through the unperturbed medium. Our results show that the SiO emission arising from the early stage of the magnetic precursor typically has very narrow line profiles slightly shifted in velocity with respect to the ambient cloud. This narrow emission is generated in the region where the bulk of the ion fluid has already slipped to larger velocities in the precursor as observed toward the young L1448-mm outflow. This strongly suggests that the detection of narrow SiO emission, and of an ion enhancement in young shocks, is produced by the magnetic precursor of C-shocks. In addition, our model shows that the different velocity components observed toward this outflow can be explained by the coexistence of different shocks at different evolutionary stages, within the same beam of the single-dish observations.

  20. Scattering in the atmosphere of Venus. I - Line profiles and curves of growth for isotropic scattering

    NASA Technical Reports Server (NTRS)

    Young, L. D. G.; Kattawar, G. W.

    1976-01-01

    Line profiles and curves of growth were computed for both reflected and transmitted radiation for typical lines in CO2 bands (in the photographic infrared) which occur in the spectrum of Venus. In the model, the pressure variation with altitude was considered, and the base of the cloud deck was set at the 2 bar level. The temperature was held constant at 250 K, and a Voigt profile was used for the line shape. It was also assumed that the scale height of the cloud particles was equal to the scale height of the gas. The calculations were made for four values of the scattering optical thickness (0.1, 1.0, and 100) using a continuum single-scattering albedo of 0.9975 (which gives a Bond albedo of 0.896 for a scattering optical thickness of 100, the value observed for Venus at these wavelengths). Curves of growth are also presented for reflected radiation which has been averaged over the visible disk for three values of the Venus phase angle (0, 86, and 166 deg).

  1. Both SCF(Cdc4alpha) and SCF(Cdc4gamma) are required for cyclin E turnover in cell lines that do not overexpress cyclin E.

    PubMed

    Sangfelt, Olle; Cepeda, Diana; Malyukova, Alena; van Drogen, Frank; Reed, Steven I

    2008-04-15

    The ubiquitin-mediated turnover of cyclin E is regulated by phosphorylation and the activity of the ubiquitin ligase SCF(Cdc4) (also known as SCF(Fbw7)). In 293A cells, SCF complexes containing two different Cdc4 isoforms, alpha and gamma, are required for efficient cyclin E ubiquitylation. Whereas SCF(Cdc4gamma) ubiquitylates cyclin E directly, SCF(Cdc4alpha) serves as a cofactor for Pin1-mediated prolyl isomerization of the cyclin E phosphodegron, essential to potentiate ubiquitylation. In the current study, we show that the requirement for both Cdc4alpha and gamma is general, except in cell lines where cyclin E is expressed at an elevated level. Under these circumstances, Cdc4alpha is sufficient for cyclin E turnover. Furthermore, the requirement for Cdc4gamma can be bypassed by ectopic overexpression of cyclin E. PMID:18414042

  2. Transcriptome Profiling Reveals Degree of Variability in Induced Pluripotent Stem Cell Lines: Impact for Human Disease Modeling.

    PubMed

    Schuster, Jens; Halvardson, Jonatan; Pilar Lorenzo, Laureanne; Ameur, Adam; Sobol, Maria; Raykova, Doroteya; Annerén, Göran; Feuk, Lars; Dahl, Niklas

    2015-10-01

    Induced pluripotent stem cell (iPSC) technology has become an important tool for disease modeling. Insufficient data on the variability among iPSC lines derived from a single somatic parental cell line have in practice led to generation and analysis of several, usually three, iPSC sister lines from each parental cell line. We established iPSC lines from a human fibroblast line (HDF-K1) and used transcriptome sequencing to investigate the variation among three sister lines (iPSC-K1A, B, and C). For comparison, we analyzed the transcriptome of an iPSC line (iPSC-K5B) derived from a different fibroblast line (HDF-K5), a human embryonic stem cell (ESC) line (ESC-HS181), as well as the two parental fibroblast lines. All iPSC lines fulfilled stringent criteria for pluripotency. In an unbiased cluster analysis, all stem cell lines (four iPSCs and one ESC) clustered together as opposed to the parental fibroblasts. The transcriptome profiles of the three iPSC sister lines were indistinguishable from each other, and functional pathway analysis did not reveal any significant hits. In contrast, the expression profiles of the ESC line and the iPSC-K5B line were distinct from that of the sister lines iPSC-K1A, B, and C. Differentiation to embryoid bodies and subsequent analysis of germ layer markers in the five stem cell clones confirmed that the distribution of their expression profiles was retained. Taken together, our observations stress the importance of using iPSCs of different parental origin rather than several sister iPSC lines to distinguish disease-associated mechanisms from genetic background effects in disease modeling. PMID:26348590

  3. Transcriptional and Secretomic Profiling of Epidermal Cells Exposed to Alpha Particle Radiation

    PubMed Central

    Chauhan, Vinita; Howland, Matthew; Greene, Hillary Boulay; Wilkins, Ruth C

    2012-01-01

    Alpha (α)-particle emitters are probable isotopes to be used in a terrorist attack. The development of biological assessment tools to identify those who have handled these difficult to detect materials would be an asset to our current forensic capacity. In this study, for the purposes of biomarker discovery, human keratinocytes were exposed to α-particle and X-radiation (0.98 Gy/h at 0, 0.5, 1.0, 1.5 Gy) and assessed for differential gene and protein expression using microarray and Bio-Plex technology, respectively. Secretomic analysis of supernatants showed expression of two pro-inflammatory cytokines (IL-13 and PDGF-bb) to be exclusively affected in α-particle exposed cells. The highest dose of α-particle radiation modulated a total of 67 transcripts (fold change>|1.5|, (False discovery rate) FDR<0.05) in exposed cells. Several genes which responded with high expression levels (>2 fold) included KIF20A, NEFM, C7orf10, HIST1H2BD, BMP6, and HIST1H2AC. Among the high expressing genes, five (CCNB2, BUB1, NEK2, CDC20, AURKA) were also differentially expressed at the medium (1.0 Gy) dose however, these genes were unmodulated following exposure to X-irradiation. Networks of these genes clustered around tumor protein-53 and transforming growth factor-beta signaling. This study has identified some potential gene /protein responses and networks that may be validated further to confirm their specificity and potential to be signature biomarkers of α-particle exposure. PMID:23002402

  4. Profiles of Basal and stimulated receptor signaling networks predict drug response in breast cancer lines.

    PubMed

    Niepel, Mario; Hafner, Marc; Pace, Emily A; Chung, Mirra; Chai, Diana H; Zhou, Lili; Schoeberl, Birgit; Sorger, Peter K

    2013-09-24

    Identifying factors responsible for variation in drug response is essential for the effective use of targeted therapeutics. We profiled signaling pathway activity in a collection of breast cancer cell lines before and after stimulation with physiologically relevant ligands, which revealed the variability in network activity among cells of known genotype and molecular subtype. Despite the receptor-based classification of breast cancer subtypes, we found that the abundance and activity of signaling proteins in unstimulated cells (basal profile), as well as the activity of proteins in stimulated cells (signaling profile), varied within each subtype. Using a partial least-squares regression approach, we constructed models that significantly predicted sensitivity to 23 targeted therapeutics. For example, one model showed that the response to the growth factor receptor ligand heregulin effectively predicted the sensitivity of cells to drugs targeting the cell survival pathway mediated by PI3K (phosphoinositide 3-kinase) and Akt, whereas the abundance of Akt or the mutational status of the enzymes in the pathway did not. Thus, basal and signaling protein profiles may yield new biomarkers of drug sensitivity and enable the identification of appropriate therapies in cancers characterized by similar functional dysregulation of signaling networks. PMID:24065145

  5. Polarization measurements of the Lyman-(alpha)1 x-ray emission lines of hydrogenlike Ar17+ and Fe25+ at high electron impact energies

    SciTech Connect

    Robbins, D L; Beiersdorfer, P; Faenov, A Y; Pikuz, T A; Thorn, D B; Chen, H; Reed, K J; Smith, A J; Brown, G V; Kelley, R L; Kilbouren, C A; Porter, F S

    2006-01-29

    We have measured the polarization of the 2p{sub 3/2} {yields} 1s{sub 1/2} Lyman-{alpha}{sub 1} x-ray line of hydrogenlike Ar{sup 17+} and Fe{sup 25+} at electron impact energies ranging from 7 to 25 threshold units. The highly charged argon and iron ions were produced using the Lawrence Livermore National Laboratory SuperEBIT electron beam ion trap. A combination of two crystal spectrometers and a microcalorimeter were used to record the Lyman-{alpha} x-ray emission of Ar{sup 17+} and Fe{sup 25+} and to infer the polarization of the Lyman-{alpha}{sub 1} line. Our results show a systematic discrepancy with the predictions of distorted-wave calculations.

  6. On the reliability of powder diffraction Line Profile Analysis of plastically deformed nanocrystalline systems

    PubMed Central

    Rebuffi, Luca; Troian, Andrea; Ciancio, Regina; Carlino, Elvio; Amimi, Amine; Leonardi, Alberto; Scardi, Paolo

    2016-01-01

    An iron-molybdenum alloy powder was extensively deformed by high energy milling, so to refine the bcc iron domain size to nanometer scale (~10 nm) and introduce a strong inhomogeneous strain. Both features contribute to comparable degree to the diffraction peak profile broadening, so that size and strain contributions can be easily separated by exploiting their different dependence on the diffraction angle. To assess the reliability of Line Profile Analysis, results were compared with evidence from other techniques, including scanning and transmission electron microscopy and X-ray small angle scattering. Results confirm the extent of the size broadening effect, whereas molecular dynamics simulations provide insight into the origin of the local atomic, inhomogeneous strain, pointing out the role of dislocations, domain boundaries and interactions among crystalline domains. PMID:26860471

  7. On the reliability of powder diffraction Line Profile Analysis of plastically deformed nanocrystalline systems.

    PubMed

    Rebuffi, Luca; Troian, Andrea; Ciancio, Regina; Carlino, Elvio; Amimi, Amine; Leonardi, Alberto; Scardi, Paolo

    2016-01-01

    An iron-molybdenum alloy powder was extensively deformed by high energy milling, so to refine the bcc iron domain size to nanometer scale (~10 nm) and introduce a strong inhomogeneous strain. Both features contribute to comparable degree to the diffraction peak profile broadening, so that size and strain contributions can be easily separated by exploiting their different dependence on the diffraction angle. To assess the reliability of Line Profile Analysis, results were compared with evidence from other techniques, including scanning and transmission electron microscopy and X-ray small angle scattering. Results confirm the extent of the size broadening effect, whereas molecular dynamics simulations provide insight into the origin of the local atomic, inhomogeneous strain, pointing out the role of dislocations, domain boundaries and interactions among crystalline domains. PMID:26860471

  8. On the origins of C IV absorption profile diversity in broad absorption line quasars

    NASA Astrophysics Data System (ADS)

    Baskin, Alexei; Laor, Ari; Hamann, Fred

    2015-05-01

    There is a large diversity in the C IV broad absorption line (BAL) profile among BAL quasars (BALQs). We quantify this diversity by exploring the distribution of the C IV BAL properties, full width at half-maximum (FWHM), maximum depth of absorption and its velocity shift (vmd), using the Sloan Digital Sky Survey DR7 quasar catalogue. We find the following: (i) Although the median C IV BAL profile in the quasar rest-frame becomes broader and shallower as the UV continuum slope (αUV at 1700-3000 Å) gets bluer, the median individual profile in the absorber rest-frame remains identical, and is narrow (FWHM = 3500 km s-1) and deep. Only 4 per cent of BALs have FWHM > 10 000 km s-1. (ii) As the He II emission equivalent width (EW) decreases, the distributions of FWHM and vmd extend to larger values, and the median maximum depth increases. These trends are consistent with theoretical models in which softer ionizing continua reduce overionization, and allow radiative acceleration of faster BAL outflows. (iii) As αUV becomes bluer, the distribution of vmd extends to larger values. This trend may imply faster outflows at higher latitudes above the accretion disc plane. (iv) For non-BALQs, the C IV emission line decreases with decreasing He II EW, and becomes more asymmetric and blueshifted. This suggests an increasing relative contribution of emission from the BAL outflow to the C IV emission line as the ionizing spectral energy distribution (SED) gets softer, which is consistent with the increasing fraction of BALQs as the ionizing SED gets softer.

  9. Alpha-ketoglutarate dehydrogenase complex-dependent succinylation of proteins in neurons and neuronal cell lines

    PubMed Central

    Gibson, Gary E.; Xu, Hui; Chen, Huan-Lian; Chen, Wei; Denton, Travis; Zhang, Sheng

    2015-01-01

    Reversible post-translation modifications of proteins are common in all cells and appear to regulate many processes. Nevertheless, the enzyme(s) responsible for the alterations and the significance of the modification are largely unknown. Succinylation of proteins occurs and causes large changes in the structure of proteins; however, the source of the succinyl groups, the targets, and the consequences of these modifications on other proteins are unknown. These studies focused on succinylation of mitochondrial proteins. The results demonstrate that the α-ketoglutarate dehydrogenase complex (KGDHC) can serve as a trans-succinylase that mediates succinylation in an α-ketoglutarate-dependent manner. Inhibition of KGDHC reduced suc-cinylation of both cytosolic and mitochondrial proteins in cultured neurons and in a neuronal cell line. Purified KGDHC can succinylate multiple proteins including other enzymes of the tricarboxylic acid (TCA) cycle leading to modification of their activity. Inhibition of KGDHC also modifies acetylation by modifying the pyruvate dehydrogenase complex. The much greater effectiveness of KGDHC than succinyl CoA suggests that the catalysis due to the E2k suc-cinyltransferase is important. Succinylation appears to be a major signaling system and it can be mediated by KGDHC. PMID:25772995

  10. X-ray diffraction line profile analysis of KBr thin films

    NASA Astrophysics Data System (ADS)

    Rai, R.; Triloki, Triloki; Singh, B. K.

    2016-08-01

    In the present work, the microcrystalline characteristics of KBr thin films have been investigated by evaluating the breadth of diffraction peak. The Williamson-Hall, the Size-Strain plot and the single-line Voigt methods are employed to deconvolute the finite crystallite size and microstrain contribution from the broaden X-ray profile. The texture coefficient and dislocation density have been determined along each diffraction peak. Other relevant physical parameters such as stress, Young's modulus and energy density are also estimated using uniform stress deformation and uniform deformation energy density approximation of Williamson-Hall method.

  11. An efficient method for computing spectral line profiles in stellar envelopes

    NASA Astrophysics Data System (ADS)

    Bertout, C.

    1984-10-01

    A computational technique is presented for calculating line-profiles from astronomical envelopes with complex velocity regions. The velocity field is assumed to accelerate outward through an envelope with no continuous opacity source. The emergent intensity is integrated numerically from the source to its maximum radius after evaluating a set of impact parameters at all locations on the outward bound rays. Account is taken of the interactions experienced by the photons and the optical depth at which the emergent intensity is measured. A method for separating out and integrating the fast-varying part of the emergent intensity is defined. The resultant code is demonstrated with calculations of power-law velocities. The model, written in FORTRAN77, is recommended for a variety of spectral line calculations, including static chromospheres and extended envelopes.

  12. Emission-line profiles in SNe Ib/c - Probing the ejecta geometry

    SciTech Connect

    Taubenberger, S.; Valenti, S.

    2009-05-03

    To constrain the ejecta geometry of stripped-envelope core-collapse SNe, we investigate nearly 100 nebular spectra of 39 objects, several previously unpublished. We perform a Gauss-fitting of [O I]{lambda}{lambda}6300, 6364 in all spectra, and on the basis of the best-fit parameters organise the objects into morphological classes. We conclude that at least 40% of all SNe Ib/c must be aspherical. In some SNe, the [O I] line exhibits a variety of shifted secondary peaks or shoulders, interpreted as blobs of matter ejected at high velocity. The profile of Mg I]{lambda}4571 generally resembles that of [O I]{lambda}{lambda}6300, 6364, suggesting negligible contamination from other lines and confirming that O and Mg are similarly distributed within the ejecta.

  13. Inversion for Sound Speed Profile by Using a Bottom Mounted Horizontal Line Array in Shallow Water

    NASA Astrophysics Data System (ADS)

    Li, Feng-Hua; Zhang, Ren-He

    2010-08-01

    Ocean acoustic tomography is an appealing technique for remote monitoring of the ocean environment. In shallow water, matched field processing (MFP) with a vertical line array is one of the widely used methods for inverting the sound speed profile (SSP) of water column. The approach adopted is to invert the SSP with a bottom mounted horizontal line array (HLA) based on MFP. Empirical orthonormal functions are used to express the SSP, and perturbation theory is used in the forward sound field calculation. This inversion method is applied to the data measured in a shallow water acoustic experiment performed in 2003. Successful results show that the bottom mounted HLA is able to estimate the SSP. One of the most important advantages of the inversion method with bottom mounted HLA is that the bottom mounted HLA can keep a stable array shape and is safe in a relatively long period.

  14. Deep seismic profiling using off-line recorders, Miura Peninsula, Kanto, Japan.

    NASA Astrophysics Data System (ADS)

    Kawamura, T.; Hirata, N.; Sato, H.; Onishi, M.; Noda, K.

    2003-12-01

    The deep seismic profiling around Metropolitan Tokyo (Kanto area) began from 2002 under the project named . The deep seismic profiling was performed along the Tokyo Bay (Tokyo Bay 2003) from July to August in 2003, to obtain an image of the source fault of the Kanto earthquake of 1923 (M7.9), and deeper extension of inland active faults in Miura Peninsula. In the Tokyo Bay 2003, seismic reflection data were acquired along a 71-km-long seismic line from the Miura Peninsula to Tokyo Bay, using digital-telemetry cable system, including ocean bottom cables. However, this seismic line at Miura Peninsula passes through the densely populated area and due to the cultural noise the low S/N ratio was expected. Keeping away from the noise along the cable-type receiver line, 51 off-line recorders with a 4.5 Hz and 3-compornent geophone were deployed at carefully selected, quiet receiver points. During 90 days continuous recording, seismic signals produced by four vibroseis trucks at 195 locations and air-guns (1500 cu. inch) at 4280 locations were recorded including ca. 150 of earthquakes. Judging from the preliminary receiver gathers, two later phases (A and B) are recognized. The later phase A, located at TWT (Two-way travel time) 4 to 5.5 sec., is interpreted as a reflection from the top of the Philippine Sea Plate. The later phase B at TWT 7 to 8 sec. corresponds to the deeper reflection under the Philippine Sea Plate, respectively.

  15. Genetic parameters and crossbreeding effects of fat deposition and fatty acid profiles in Iberian pig lines.

    PubMed

    Ibáñez-Escriche, N; Magallón, E; Gonzalez, E; Tejeda, J F; Noguera, J L

    2016-01-01

    The aim of this study was to estimate the genetic and environmental parameters and crossbreeding effects on fatty acid and fat traits in the Iberian pig. Our final goal is to explore target selection traits and define crossbreeding strategies. The phenotypes were obtained under intensive management from 470 animals in a diallelic experiment involving Retinto, Torbiscal, and Entrepelado lines. The data set was composed of backfat thickness at the fourth rib (BFT), intramuscular fat (IMF) in the longissimus thoracis (LT), and the fatty acid profile for IMF and subcutaneous fat (SCF) traits. Data were analyzed through a Bayesian bivariate animal model by using a reparameterization of Dickerson's model. The results obtained showed an important genetic determinism for all traits analyzed with heritability ranging from 0.09 to 0.67. The common environment litter effect also had an important effect on IMF (0.34) and its fatty acid composition (0.06-0.53) at slaughter. The additive genetic correlation between BFT and IMF (additive genetic correlation [] = 0.31) suggested that it would be possible to improve lean growth independent of the IMF with an appropriate selection index. Furthermore, the high additive genetic correlation ( = 0.68) found between MUFA tissues would seem to indicate that either the LT or SCF could be used as the reference tissue for MUFA selection. The relevance of the crossbreeding parameters varied according to the traits analyzed. Backfat thickness at the fourth rib and the fatty acid profile of the IMF showed relevant differences between crosses, mostly due to line additive genetic effects associated with the Retinto line. On the contrary, those for IMF crosses were probably mainly attributable to heterosis effects. Particularly, heterosis effects were relevant for the Retinto and Entrepelado crosses (approximately 16% of the trait), which could be valuable for a crossbreeding system involving these lines. PMID:26812309

  16. Alpha-ketoglutarate dehydrogenase complex-dependent succinylation of proteins in neurons and neuronal cell lines.

    PubMed

    Gibson, Gary E; Xu, Hui; Chen, Huan-Lian; Chen, Wei; Denton, Travis T; Zhang, Sheng

    2015-07-01

    Reversible post-translation modifications of proteins are common in all cells and appear to regulate many processes. Nevertheless, the enzyme(s) responsible for the alterations and the significance of the modification are largely unknown. Succinylation of proteins occurs and causes large changes in the structure of proteins; however, the source of the succinyl groups, the targets, and the consequences of these modifications on other proteins remain unknown. These studies focused on succinylation of mitochondrial proteins. The results demonstrate that the α-ketoglutarate dehydrogenase complex (KGDHC) can serve as a trans-succinylase that mediates succinylation in an α-ketoglutarate-dependent manner. Inhibition of KGDHC reduced succinylation of both cytosolic and mitochondrial proteins in cultured neurons and in a neuronal cell line. Purified KGDHC can succinylate multiple proteins including other enzymes of the tricarboxylic acid cycle leading to modification of their activity. Inhibition of KGDHC also modifies acetylation by modifying the pyruvate dehydrogenase complex. The much greater effectiveness of KGDHC than succinyl-CoA suggests that the catalysis owing to the E2k succinyltransferase is important. Succinylation appears to be a major signaling system and it can be mediated by KGDHC. Reversible post-translation modifications of proteins are common and may regulate many processes. Succinylation of proteins occurs and causes large changes in the structure of proteins. However, the source of the succinyl groups, the targets, and the consequences of these modifications on other proteins remains unknown. The results demonstrate that the mitochondrial α-ketoglutarate dehydrogenase complex (KGDHC) can succinylate multiple mitochondrial proteins and alter their function. Succinylation appears to be a major signaling system and it can be mediated by KGDHC. PMID:25772995

  17. Complex X-ray Absorption and the Fe K(alpha) Profile in NGC 3516

    NASA Technical Reports Server (NTRS)

    Turner, T. J.; Kraemer, S. B.; George, I. M.; Reeves, J. N.; Botorff, M. C.

    2004-01-01

    We present data from simultaneous Chandra, XMM-Newton and BeppoSAX observations of the Seyfert 1 galaxy NGC 3516, taken during 2001 April and November. We have investigated the nature of the very flat observed X-ray spectrum. Chandra grating data show the presence of X-ray absorption lines, revealing two distinct components of the absorbing gas, one which is consistent with our previous model of the UV/X-ray absorber while the other, which is outflowing at a velocity of approximately 1100 kilometers per second, has a larger column density and is much more highly ionized. The broad-band spectral characteristics of the X-ray continuum observed with XMM during 2001 April, reveal the presence of a third layer of absorption consisting of a very large column (approximately 2.5 x 10(exp 23) per square centimeter) of highly ionized gas with a covering fraction approximately 50%. This low covering fraction suggests that the absorber lies within a few 1t-days of the X-ray source and/or is filamentary in structure. Interestingly, these absorbers are not in thermal equilibrium with one another. The two new components are too highly ionized to be radiatively accelerated, which we suggest is evidence for a hydromagnetic origin for the outflow. Applying our model to the November dataset, we can account for the spectral variability primarily by a drop in the ionization states of the absorbers, as expected by the change in the continuum flux. When this complex absorption is accounted for we find the underlying continuum to be typical of Seyfert 1 galaxies. The spectral curvature attributed to the high column absorber, in turn, reduces estimates of the flux and extent of any broad Fe emission line from the accretion disk.

  18. Cell surface and secreted protein profiles of human thyroid cancer cell lines reveal distinct glycoprotein patterns.

    PubMed

    Arcinas, Arthur; Yen, Ten-Yang; Kebebew, Electron; Macher, Bruce A

    2009-08-01

    Cell surface proteins have been shown to be effective therapeutic targets. In addition, shed forms of these proteins and secreted proteins can serve as biomarkers for diseases, including cancer. Thus, identification of cell surface and secreted proteins has been a prime area of interest in the proteomics field. Most cell surface and secreted proteins are known to be glycosylated, and therefore, a proteomics strategy targeting these proteins was applied to obtain proteomic profiles from various thyroid cancer cell lines that represent the range of thyroid cancers of follicular cell origin. In this study, we oxidized the carbohydrates of secreted proteins and those on the cell surface with periodate and isolated them via covalent coupling to hydrazide resin. The glycoproteins obtained were identified from tryptic peptides and N-linked glycopeptides released from the hydrazide resin using two-dimensional liquid chromatography-tandem mass spectrometry in combination with the gas phase fractionation. Thyroid cancer cell lines derived from papillary thyroid cancer (TPC-1), follicular thyroid cancer (FTC-133), Hurthle cell carcinoma (XTC-1), and anaplastic thyroid cancer (ARO and DRO-1) were evaluated. An average of 150 glycoproteins were identified per cell line, of which more than 57% are known cell surface or secreted glycoproteins. The usefulness of the approach for identifying thyroid cancer associated biomarkers was validated by the identification of glycoproteins (e.g., CD44, galectin 3 and metalloproteinase inhibitor 1) that have been found to be useful markers for thyroid cancer. In addition to glycoproteins that are commonly expressed by all of the cell lines, we identified others that are only expressed in the more well-differentiated thyroid cancer cell lines (follicular, Hurthle cell and papillary), or by cell lines derived from undifferentiated tumors that are uniformly fatal forms of thyroid cancer (i.e., anaplastic). On the basis of the results obtained, a

  19. Using Line Profiles to Test the Fraternity of Type Ia Supernovae at High and Low Redshifts

    NASA Astrophysics Data System (ADS)

    Blondin, Stéphane; Dessart, Luc; Leibundgut, Bruno; Branch, David; Höflich, Peter; Tonry, John L.; Matheson, Thomas; Foley, Ryan J.; Chornock, Ryan; Filippenko, Alexei V.; Sollerman, Jesper; Spyromilio, Jason; Kirshner, Robert P.; Wood-Vasey, W. Michael; Clocchiatti, Alejandro; Aguilera, Claudio; Barris, Brian; Becker, Andrew C.; Challis, Peter; Covarrubias, Ricardo; Davis, Tamara M.; Garnavich, Peter; Hicken, Malcolm; Jha, Saurabh; Krisciunas, Kevin; Li, Weidong; Miceli, Anthony; Miknaitis, Gajus; Pignata, Giuliano; Prieto, Jose Luis; Rest, Armin; Riess, Adam G.; Salvo, Maria Elena; Schmidt, Brian P.; Smith, R. Chris; Stubbs, Christopher W.; Suntzeff, Nicholas B.

    2006-03-01

    Using archival data of low-redshift (z<0.01 Center for Astrophysics and SUSPECT databases) Type Ia supernovae (SNe Ia) and recent observations of high-redshift (0.16line-profile morphology, focusing on measurements of the velocity location of maximum absorption (vabs) and peak emission (vpeak). Our measurement technique makes it easier to compare low and high signal-to-noise ratio observations. We also quantify the associated sources of error, assessing the effect of line blending with assistance from the parameterized code SYNOW. We find that the evolution of vabs and vpeak for our sample lines (Ca II λ3945, Si II λ6355, and S II λλ5454, 5640) is similar for both the low- and high-redshift samples. We find that vabs for the weak S II λλ5454, 5640 lines and vpeak for S II λ5454 can be used to identify fast-declining [Δm15(B)>1.7] SNe Ia, which are also subluminous. In addition, we give the first direct evidence in two high-z SN Ia spectra of a double-absorption feature in Ca II λ3945, an event also observed, although infrequently, in low-redshift SN Ia spectra (6 out of 22 SNe Ia in our local sample). Moreover, echoing the recent studies of Dessart & Hillier in the context of Type II supernovae (SNe II), we see similar P Cygni line profiles in our large sample of SN Ia spectra. First, the magnitude of the velocity location at maximum profile absorption may underestimate that at the continuum photosphere, as observed, for example, in the optically thinner line S II λ5640. Second, we report for the first time the unambiguous and systematic intrinsic blueshift of peak emission of optical P Cygni line profiles in SN Ia spectra, by as much as 8000 km s-1. All the high-z SNe Ia analyzed in this paper were discovered and followed up by the ESSENCE

  20. Changes in growth and lipid profiles of silk gland, mid-gut biochemical composition of silkworm, Bombyx mori L. on exposure to prostaglandin F2alpha.

    PubMed

    Miao, Yun-gen; Jiang, Li-jun

    2003-01-01

    The growth of the silkworm is influenced by the outside and inside environment. Among them, the category of various endocrine hormone of inside is the main factors that adjust the characters such as growth and propagate. In this experiment, we applied different dosage of prostaglandin to the fourth and fifth instar silkworm to observe the effects of prostaglandin F2alpha (PGF2alpha) on silk gland growth, mid-gut biochemical constituents and the lipid profiles of silkworm larva, Bombyx mori L. The weight of the posterior silk gland increased significantly (P < 0.001) by 20-24% after treatment with PGF2alpha. The increase in the lipid profiles except lipase activity suggests that the silk gland had more synthetic activity that might reflect in active spinning of silkworm larva. The changes of total proteins, free amino acids and alkaline phosphatase in mid-gut of control and PGF2alpha treated silkworm, B. mori L. indicate that PGF2alpha favored stimulatory effect on physiology of digestion, absorption and transportation of nutrients which might influence on the growth and development of larva. PMID:12611497

  1. EFFECTS OF AN ACCRETION DISK WIND ON THE PROFILE OF THE BALMER EMISSION LINES FROM ACTIVE GALACTIC NUCLEI

    SciTech Connect

    Flohic, Helene M. L. G.; Eracleous, Michael; Bogdanovic, Tamara E-mail: mce@astro.psu.edu

    2012-07-10

    We explore the connection between active galactic nuclei (AGNs) with single- and double-peaked broad Balmer emission lines by using models dealing with radiative transfer effects through a disk wind. Our primary goal is to assess the applicability of the Murray and Chiang model by making an extensive and systematic comparison of the model predictions with data. In the process, we also verify the original derivation and evaluate the importance of general relativistic effects. As the optical depth through the emission layer increases, the peaks of a double-peaked profile move closer and eventually merge, producing a single peak. The properties of the emission line profile depend as sensitively on the geometric parameters of the line-emitting portion of the disk as they do on the disk-wind parameters. Using a parameter range that encompasses the expected characteristics of the broad-line regions in AGNs, we construct a database of model profiles and measure a set of diagnostic properties. Comparisons of the model profiles with emission lines from a subset of Sloan digital Sky Survey quasars show that observed lines are consistent with moderately large optical depth in the disk wind and a range of disk inclinations i {approx}< 45 Degree-Sign . Including relativistic effects is necessary to produce the asymmetries of observed line profiles.

  2. Time-course gene profiling and networks in demethylated retinoblastoma cell line

    PubMed Central

    Malusa, Federico; Taranta, Monia; Zaki, Nazar; Cinti, Caterina; Capobianco, Enrico

    2015-01-01

    Retinoblastoma, a very aggressive cancer of the developing retina, initiatiates by the biallelic loss of RB1 gene, and progresses very quickly following RB1 inactivation. While its genome is stable, multiple pathways are deregulated, also epigenetically. After reviewing the main findings in relation with recently validated markers, we propose an integrative bioinformatics approach to include in the previous group new markers obtained from the analysis of a single cell line subject to epigenetic treatment. In particular, differentially expressed genes are identified from time course microarray experiments on the WERI-RB1 cell line treated with 5-Aza-2′-deoxycytidine (decitabine; DAC). By inducing demethylation of CpG island in promoter genes that are involved in biological processes, for instance apoptosis, we performed the following main integrative analysis steps: i) Gene expression profiling at 48h, 72h and 96h after DAC treatment; ii) Time differential gene co-expression networks and iii) Context-driven marker association (transcriptional factor regulated protein networks, master regulatory paths). The observed DAC-driven temporal profiles and regulatory connectivity patterns are obtained by the application of computational tools, with support from curated literature. It is worth emphasizing the capacity of networks to reconcile multi-type evidences, thus generating testable hypotheses made available by systems scale predictive inference power. Despite our small experimental setting, we propose through such integrations valuable impacts of epigenetic treatment in terms of gene expression measurements, and then validate evidenced apoptotic effects. PMID:26143641

  3. An advanced AFM sensor for high-aspect ratio pattern profile in-line measurement

    NASA Astrophysics Data System (ADS)

    Watanabe, Masahiro; Baba, Shuichi; Nakata, Toshihiko; Kurenuma, Toru; Kuroda, Hiroshi; Hiroki, Takenori

    2006-03-01

    Design rule shrinkage and the wider adoption of new device structures such as STI, copper damascene interconnects, and deep trench structures have increased the necessity of in-line process monitoring of step heights and profiles of device structures. For monitoring active device patterns, not test patterns as in OCD, AFM is the only non-destructive 3D monitoring tool. The barriers to using AFM in-line monitoring are its slow throughput and the accuracy degradation associated with probe tip wear and spike noise caused by unwanted oscillation on the steep slopes of high-aspect-ratio patterns. Our proprietary AFM scanning method, Step in mode®, is the method best suited to measuring high-aspect-ratio pattern profiles. Because the probe is not dragged on the sample surface as in conventional AFM, the profile trace fidelity across steep slopes is excellent. Because the probe does not oscillate and hit the sample at a high frequency as in AC scanning mode, this mode is free from unwanted spurious noises on steep sample slopes and incurs extremely little probe tip wear. To fully take advantage of the above properties, we have developed an AFM sensor optimized for in-line use, which produces accurate profile data at high speeds. The control scheme we have developed for the AFM sensor, which we call "Smart Step-in", elaborately analyses the contact force signal, enabling efficient probe tip scanning and a low and stable contact force. The mechanism of the AFM sensor has been optimized for the higher scanning rate and has improved the accuracy, such as the scanning planarity, position and height accuracy, and slope angle accuracy. Our prototype AFM sensor can scan high-aspect-ratio patterns while stabilizing the contact force at 3 nN. The step height measurement repeatability was 0.8 nm (3σ). A STI-like test pattern was scanned, and the steep sidewalls with angles of 84° were measured with high fidelity and without spurious noises.

  4. RNA expression profiling in depressed patients suggests retinoid-related orphan receptor alpha as a biomarker for antidepressant response.

    PubMed

    Hennings, J M; Uhr, M; Klengel, T; Weber, P; Pütz, B; Touma, C; Czamara, D; Ising, M; Holsboer, F; Lucae, S

    2015-01-01

    Response to antidepressant treatment is highly variable with some patients responding within a few weeks, whereas others have to wait for months until the onset of clinical effects. Gene expression profiling may be a tool to identify markers of antidepressant treatment response and new potential drug targets. In a first step, we selected 12 male, age- and severity-matched pairs of remitters and nonresponders, and analyzed expression profiles in peripheral blood at admission and after 2 and 5 weeks of treatment using Illumina expression arrays. We identified 127 transcripts significantly associated with treatment response with a minimal P-value of 9.41 × 10(-)(4) (false discovery rate-corrected). Analysis of selected transcripts in an independent replication sample of 142 depressed inpatients confirmed that lower expression of retinoid-related orphan receptor alpha (RORa, P=6.23 × 10(-4)), germinal center expressed transcript 2 (GCET2, P=2.08 × 10(-2)) and chitinase 3-like protein 2 (CHI3L2, P=4.45 × 10(-2)) on admission were associated with beneficial treatment response. In addition, leukocyte-specific protein 1 (LSP1) significantly decreased after 5 weeks of treatment in responders (P=2.91 × 10(-2)). Additional genetic, in vivo stress responsitivity data and murine gene expression findings corroborate our finding of RORa as a transcriptional marker of antidepressant response. In summary, using a genome-wide transcriptomics approach and subsequent validation studies, we identified several transcripts including the circadian gene transcript RORa that may serve as biomarkers indicating antidepressant treatment response. PMID:25826113

  5. Transcript profiling reveals expression differences in wild-type and glabrous soybean lines

    PubMed Central

    2011-01-01

    Background Trichome hairs affect diverse agronomic characters such as seed weight and yield, prevent insect damage and reduce loss of water but their molecular control has not been extensively studied in soybean. Several detailed models for trichome development have been proposed for Arabidopsis thaliana, but their applicability to important crops such as cotton and soybean is not fully known. Results Two high throughput transcript sequencing methods, Digital Gene Expression (DGE) Tag Profiling and RNA-Seq, were used to compare the transcriptional profiles in wild-type (cv. Clark standard, CS) and a mutant (cv. Clark glabrous, i.e., trichomeless or hairless, CG) soybean isoline that carries the dominant P1 allele. DGE data and RNA-Seq data were mapped to the cDNAs (Glyma models) predicted from the reference soybean genome, Williams 82. Extending the model length by 250 bp at both ends resulted in significantly more matches of authentic DGE tags indicating that many of the predicted gene models are prematurely truncated at the 5' and 3' UTRs. The genome-wide comparative study of the transcript profiles of the wild-type versus mutant line revealed a number of differentially expressed genes. One highly-expressed gene, Glyma04g35130, in wild-type soybean was of interest as it has high homology to the cotton gene GhRDL1 gene that has been identified as being involved in cotton fiber initiation and is a member of the BURP protein family. Sequence comparison of Glyma04g35130 among Williams 82 with our sequences derived from CS and CG isolines revealed various SNPs and indels including addition of one nucleotide C in the CG and insertion of ~60 bp in the third exon of CS that causes a frameshift mutation and premature truncation of peptides in both lines as compared to Williams 82. Conclusion Although not a candidate for the P1 locus, a BURP family member (Glyma04g35130) from soybean has been shown to be abundantly expressed in the CS line and very weakly expressed in the

  6. Line profiles variations from atmospheric eclipses: Constraints on the wind structure in Wolf-Rayet stars

    NASA Technical Reports Server (NTRS)

    Auer, L. H.; Koenigsberger, G.

    1994-01-01

    Binary systems in which one of the components has a stellar wind may present a phenomenon known as 'wind' or 'atmospheric eclipse', in which that wind occults the luminous disk of the companion. The enhanced absorption profile, relative to the spectrum at uneclipsed orbital phases, can be be modeled to yield constraints on the spatial structure of the eclipsing wind. A new, very efficient approach to the radiative transfer problem, which makes no requirements with respect to monotonicity of the velocity gradient or size of that gradient, is presented. The technique recovers both the comoving frame calculation and the Sobolev approximation in the appropiate limits. Sample computer simulations of the line profile variations induced by wind eclipses are presented. It is shown that the location of the wind absorption features in frequency is a diagnostic tool for identifying the size of the wind acceleration region. Comparison of the model profile variations with the observed variations in the Wolf-Rayet (W-R)+6 binary system V444 Cyg illustrate how the method can be used to derive information on the structure of the wind of the W-R star constrain the size of the W-R core radius.

  7. Gene expression profiling reveals novel regulation by bisphenol-A in estrogen receptor-{alpha}-positive human cells

    SciTech Connect

    Singleton, David W.; Feng, Yuxin; Yang, Jun; Puga, Alvaro; Lee, Adrian V.; Khan, Sohaib A. . E-mail: sohaib.khan@uc.edu

    2006-01-15

    Bisphenol-A (BPA) shows proliferative actions in uterus and mammary glands and may influence the development of male and female reproductive tracts in utero or during early postnatal life. Because of its ability to function as an estrogen receptor (ER) agonist, BPA has the potential to disrupt normal endocrine signaling through regulation of ER target genes. Some genes are regulated by both estradiol (E2) and BPA, but those exclusive to either agent have not been described. Using a yeast strain incorporating a vitellogenin A2 ERE-LacZ reporter gene into the genome, we found that BPA induced expression of the reporter in colonies transformed with the ER{alpha} expression plasmid, illustrating BPA-mediated regulation within a chromatin context. Additionally, a reporter gene transiently transfected into the endometrial cancer (Ishikawa) cell line also showed BPA activity, although at 100-fold less potency than E2. To compare global gene expression in response to BPA and E2, we used a variant of the MCF-7 breast cancer cell line stably expressing HA-tagged ER{alpha}. Cultures were treated for 3 h with an ethanol vehicle, E2 (10{sup -8} M), or BPA (10{sup -6} M), followed by isolation of RNA and microarray analysis with the human U95A probe array (Affymetrix, Santa Clara, CA, USA). More than 300 genes were changed 2-fold or more by either or both agents, with roughly half being up-regulated and half down-regulated. A number of growth- and development-related genes, such as HOXC1 and C6, Wnt5A, Frizzled, TGF{beta}-2, and STAT inhibitor 2, were found to be affected exclusively by BPA. We used quantitative real-time PCR to verify regulation of the HOXC6 gene, which showed decreased expression of approximately 2.5-fold by BPA. These results reveal novel effects by BPA and E2, raising interesting possibilities regarding the role of endocrine disruptors in sexual development.

  8. Development of monoclonal antibodies specifically recognizing the endogenous sterile alpha motif and HD domain 1 protein in porcine cell lines.

    PubMed

    Yang, Shen; Zhou, Yan-Jun; Zhan, Yuan; Yu, Ling-Xue; Jiang, Yi-Feng; Tong, Wu; Tong, Guang-Zhi

    2014-10-01

    The sterile alpha motif and HD domain 1 (SAMHD1) protein has been identified as a novel innate immunity restriction factor that participates in processes crucial to the viral life cycle. In the present study, we describe a procedure to generate monoclonal antibodies (MAbs) against porcine SAMHD1 and investigate its characteristics to analyze the expression of endogenous SAMHD1. The open reading frame of porcine SAMHD1 was cloned into the prokaryotic expression vector pCold-TF DNA to construct a recombinant plasmid pcold-pSAMHD1 and induce expression of recombinant porcine SAMHD1 protein by IPTG in Escherichia coli Rosetta. The purified recombinant porcine SAMHD1 protein was used to prepare MAbs of SAMHD1. After subcloning five times hybridoma cell clones expressing SAMHD1, MAbs were generated. Western blot analysis and indirect immunofluorescence assay showed that the overexpressed porcine SAMHD1 in 293T cells and endogenous SAMHD1 protein in porcine cell lines could be specifically recognized by the MAbs produced in this study. In conclusion, specific MAbs of porcine SAMHD1 are reported, and these MAbs provide a valuable tool for further studies of SAMHD1-mediated signaling in virus-infected cells to elucidate the underlying antiviral mechanism. PMID:25358004

  9. Development of Monoclonal Antibodies Specifically Recognizing the Endogenous Sterile Alpha Motif and HD Domain 1 Protein in Porcine Cell Lines

    PubMed Central

    Yang, Shen; Zhou, Yan-jun; Zhan, Yuan; Yu, Ling-xue; Jiang, Yi-feng; Tong, Wu

    2014-01-01

    The sterile alpha motif and HD domain 1 (SAMHD1) protein has been identified as a novel innate immunity restriction factor that participates in processes crucial to the viral life cycle. In the present study, we describe a procedure to generate monoclonal antibodies (MAbs) against porcine SAMHD1 and investigate its characteristics to analyze the expression of endogenous SAMHD1. The open reading frame of porcine SAMHD1 was cloned into the prokaryotic expression vector pCold-TF DNA to construct a recombinant plasmid pcold-pSAMHD1 and induce expression of recombinant porcine SAMHD1 protein by IPTG in Escherichia coli Rosetta. The purified recombinant porcine SAMHD1 protein was used to prepare MAbs of SAMHD1. After subcloning five times hybridoma cell clones expressing SAMHD1, MAbs were generated. Western blot analysis and indirect immunofluorescence assay showed that the overexpressed porcine SAMHD1 in 293T cells and endogenous SAMHD1 protein in porcine cell lines could be specifically recognized by the MAbs produced in this study. In conclusion, specific MAbs of porcine SAMHD1 are reported, and these MAbs provide a valuable tool for further studies of SAMHD1-mediated signaling in virus-infected cells to elucidate the underlying antiviral mechanism. PMID:25358004

  10. Asymmetric profiles and prewetting lines in the filling of planar slits with Ne.

    PubMed

    Sartarelli, Salvador A; Szybisz, Leszek

    2013-05-23

    The filling of slits with identical planar walls is investigated in the frame of the density functional theory. For this kind of slit, the confining potential is symmetric with respect to its central plane. Closed and open systems are studied by applying, respectively, the canonical and grand canonical ensembles (CE and GCE). Results obtained for the confinement of fluid Ne by alkaline surfaces are reported. The behavior of these systems is analyzed by varying the strength of the Ne-substrate attraction, the temperature T, and the coverage Γ(l). It is assumed that the one-body density of the fluid, ρ(r), is uniform along the (x, y) planes parallel to the walls, becoming a function of the coordinate z perpendicular to those planes. Two sorts of solutions are found for the density profile: (i) symmetric ones that follow the left-right symmetry of the potential exerted by the walls and (ii) asymmetric ones that break the symmetry of the slit. The pores are wide enough for determining prewetting (PW) lines and wetting and critical PW temperatures, i.e., T(w) and T(cpw), from the analysis of symmetric solutions provided by both the CE and GCE schemes. Asymmetric species are examined in detail for T > T(w). It is shown that for a given Ne-substrate pair at a fixed T both the CE and GCE frames yield only one asymmetric 2-fold degenerate stable profile (formed by a "thin" wetting film at one wall and a "thick" wetting film at the other) coexisting with two symmetric profiles (formed by "thin" or "thick" wetting films at the two walls), while the remaining asymmetric states are at best metastable. This feature occurs along PW lines and disappears at T(cpw). PMID:23617543

  11. Forbidden high excitation lines and TiO bands in the symbiotic system QW SGE = MH-alpha 80-5

    NASA Astrophysics Data System (ADS)

    Calabro, E.; Mammano, A.

    1992-11-01

    The suspected symbiotic nature of MH-alpha 80-5 = AS 360 was confirmed for the first time by spectra taken in 1967 at Asiago Observatory (Marini, 1969) showing the O III and Ne III forbidden lines, together with strong He II lines and TiO bands. According to Allen (1984) nebular lines were absent in 1978, while we recorded them again in 1985. Further excitation strengthening up to forbidden Fe VII and O VI, in 1990 were noted by Munari and Buson (1991). The evolution implies density variability in the thick nebula surrounding this new variable system.

  12. Profile of the alpha-bungarotoxin-binding regions on the extracellular part of the alpha-chain of Torpedo californica acetylcholine receptor.

    PubMed Central

    Mulac-Jericevic, B; Atassi, M Z

    1987-01-01

    The continuous alpha-neurotoxin-binding regions on the extracellular part (residues 1-210) of the alpha-chain of Torpedo californica acetylcholine receptor were localized by reaction of 125I-labelled alpha-bungarotoxin with synthetic overlapping peptides spanning this entire part of the chain. The specificity of the binding was confirmed by inhibition with unlabelled toxin and, for appropriate peptides, with unlabelled anti-(acetylcholine receptor) antibodies. Five toxin-binding regions were localized within residues 1-10, 32-41, 100-115, 122-150 and 182-198. The third, fourth and fifth (and to a lesser extent the first and second) toxin-binding regions overlapped with regions recognized by anti-(acetylcholine receptor) antibodies. The five toxin-binding regions may be distinct sites or, alternatively, different 'faces' in one (or more) sites. PMID:3435488

  13. LINE PROFILES OF CORES WITHIN CLUSTERS. II. SIGNATURES OF DYNAMICAL COLLAPSE DURING HIGH-MASS STAR FORMATION

    SciTech Connect

    Smith, Rowan J.; Shetty, Rahul; Klessen, Ralf S.; Beuther, Henrik; Bonnell, Ian A.

    2013-07-01

    Observations of atomic or molecular lines can provide important information about the physical state of star-forming regions. In order to investigate the line profiles from dynamical collapsing massive star-forming regions (MSFRs), we model the emission from hydrodynamic simulations of a collapsing cloud in the absence of outflows. By performing radiative transfer calculations, we compute the optically thick HCO{sup +} and optically thin N{sub 2}H{sup +} line profiles from two collapsing regions at different epochs. Due to large-scale collapse, the MSFRs have large velocity gradients, reaching up to 20 km s{sup -1} pc{sup -1} across the central core. The optically thin lines typically contain multiple velocity components resulting from the superposition of numerous density peaks along the line of sight. The optically thick lines are only marginally shifted to the blue side of the optically thin line profiles, and frequently do not have a central depression in their profiles due to self-absorption. As the regions evolve, the lines become brighter and the optically thick lines become broader. The lower-order HCO{sup +} (1-0) transitions are better indicators of collapse than the higher-order (4-3) transitions. We also investigate how the beam sizes affect profile shapes. Smaller beams lead to brighter and narrower lines that are more skewed to the blue in HCO{sup +} relative to the true core velocity, but show multiple components in N{sub 2}H{sup +}. High-resolution observations (e.g., with Atacama Large Millimeter Array) can test these predictions and provide insights into the nature of MSFRs.

  14. Evolution of the Iron K-Alpha Emission Line in the Black Hole Candidate GX339-4 During and Outburst Decay Phase

    NASA Technical Reports Server (NTRS)

    Feng, Y.; Zhang, S.-N.; Chen, W.; Cui, Wei

    1999-01-01

    The evolution of the iron K-alpha line emission feature was found from the black hole candidate GX339-4 when its X-ray flux (2 to 10 keV) decreased significantly. With RXTE observations, a broad line emission feature around 7 keV was detected in its quiescent and low flux state; while in the high flux state, an emission line feature around 6.4 keV was detected. A similar 6.4 keV line feature was also detected with previous ASCA observations in a high flux state. We consider that the evolution could be the evidence of the variations in the geometric structure and the physical properties of the accretion flow when the accretion rate changed. This is because that the 7 keV line feature can be produced by the radiative recombination cascade, collisional excitation, and fluorescence of Fe XXVI and Fe XXV, which can exist in a very high temperature plasma; while the 6.4 keV line feature can be produced by fluorescent K-alpha line emission of neutral iron atoms in the cold accretion disk. (copyright) 1999 American Astronomical Society. All rights reserved.

  15. Evidence for the Importance of Resonance Scattering in X-Ray Emission Line Profiles of the O Star Zeta Puppis

    SciTech Connect

    Leutenegger, M.A.; Owocki, S.P.; Kahn, S.M.; Paerels, F.B.S.; /Columbia U.

    2006-10-10

    We fit the Doppler profiles of the He-like triplet complexes of O VII and N VI in the X-ray spectrum of the O star {zeta} Pup, using XMM-Newton RGS data collected over {approx} 400 ks of exposure. We find that they cannot be well fit if the resonance and intercombination lines are constrained to have the same profile shape. However, a significantly better fit is achieved with a model incorporating the effects of resonance scattering, which causes the resonance line to become more symmetric than the intercombination line for a given characteristic continuum optical depth {tau}{sub *}. We discuss the plausibility of this hypothesis, as well as its significance for our understanding of Doppler profiles of X-ray emission lines in O stars.

  16. High-resolution H-band spectroscopy of Be stars with SDSS-III/apogee. I. New Be stars, line identifications, and line profiles

    SciTech Connect

    Chojnowski, S. Drew; Majewski, Steven R.; Hall, Matthew; Beaton, Rachael; Burton, Adam; Damke, Guillermo; Wilson, John; Whelan, David G.; Wisniewski, John P.; Shetrone, Matthew; Eikenberry, Steve; Hasselquist, Sten; Holtzman, Jon A.; Brewington, Howard; Brinkmann, J.; Mészáros, Szabolcs; Nidever, David; Schneider, Donald P.; Zasowski, Gail; Bizyaev, Dmitry; and others

    2015-01-01

    The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has amassed the largest ever collection of multi-epoch, high-resolution (R∼22,500), H-band spectra for B-type emission line (Be) stars. These stars were targeted by APOGEE as telluric standard stars and subsequently identified via visual inspection as Be stars based on H i Brackett series emission or shell absorption in addition to otherwise smooth continua and occasionally non-hydrogen emission features. The 128/238 APOGEE Be stars for which emission had never previously been reported serve to increase the total number of known Be stars by ∼6%. Because the H band is relatively unexplored compared to other wavelength regimes, we focus here on identification of the H-band lines and analysis of the emission peak velocity separations (Δv{sub p}) and emission peak intensity ratios (V/R) of the usually double-peaked H i and non-hydrogen emission lines. H i Br11 emission is found to preferentially form in the circumstellar disks at an average distance of ∼2.2 stellar radii. Increasing Δv{sub p} toward the weaker Br12–Br20 lines suggests these lines are formed interior to Br11. By contrast, the observed IR Fe ii emission lines present evidence of having significantly larger formation radii; distinctive phase lags between IR Fe ii and H i Brackett emission lines further supports that these species arise from different radii in Be disks. Several emission lines have been identified for the first time including C i 16895, a prominent feature in the spectra for almost a fifth of the sample and, as inferred from relatively large Δv{sub p} compared to the Br11–Br20, a tracer of the inner regions of Be disks. Emission lines at 15760 Å and 16781 Å remain unidentified, but usually appear along with and always have similar line profile morphology to Fe ii 16878. Unlike the typical metallic lines observed for Be stars in the optical, the H-band metallic lines, such as Fe ii 16878, never exhibit any

  17. High-Resolution H-Band Spectroscopy of Be Stars With SDSS-III/Apogee: I. New Be Stars, Line Identifications, and Line Profiles

    NASA Astrophysics Data System (ADS)

    Chojnowski, S. Drew; Whelan, David G.; Wisniewski, John P.; Majewski, Steven R.; Hall, Matthew; Shetrone, Matthew; Beaton, Rachael; Burton, Adam; Damke, Guillermo; Eikenberry, Steve; Hasselquist, Sten; Holtzman, Jon A.; Mészáros, Szabolcs; Nidever, David; Schneider, Donald P.; Wilson, John; Zasowski, Gail; Bizyaev, Dmitry; Brewington, Howard; Brinkmann, J.; Ebelke, Garrett; Frinchaboy, Peter M.; Kinemuchi, Karen; Malanushenko, Elena; Malanushenko, Viktor; Marchante, Moses; Oravetz, Daniel; Pan, Kaike; Simmons, Audrey

    2015-01-01

    The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has amassed the largest ever collection of multi-epoch, high-resolution (R˜22,500), H-band spectra for B-type emission line (Be) stars. These stars were targeted by APOGEE as telluric standard stars and subsequently identified via visual inspection as Be stars based on H i Brackett series emission or shell absorption in addition to otherwise smooth continua and occasionally non-hydrogen emission features. The 128/238 APOGEE Be stars for which emission had never previously been reported serve to increase the total number of known Be stars by ˜6%. Because the H band is relatively unexplored compared to other wavelength regimes, we focus here on identification of the H-band lines and analysis of the emission peak velocity separations (Δ{{v}p}) and emission peak intensity ratios (V/R) of the usually double-peaked H i and non-hydrogen emission lines. H i Br11 emission is found to preferentially form in the circumstellar disks at an average distance of ˜2.2 stellar radii. Increasing Δ{{v}p} toward the weaker Br12-Br20 lines suggests these lines are formed interior to Br11. By contrast, the observed IR Fe ii emission lines present evidence of having significantly larger formation radii; distinctive phase lags between IR Fe ii and H i Brackett emission lines further supports that these species arise from different radii in Be disks. Several emission lines have been identified for the first time including C i 16895, a prominent feature in the spectra for almost a fifth of the sample and, as inferred from relatively large Δ{{v}p} compared to the Br11-Br20, a tracer of the inner regions of Be disks. Emission lines at 15760 Å and 16781 Å remain unidentified, but usually appear along with and always have similar line profile morphology to Fe ii 16878. Unlike the typical metallic lines observed for Be stars in the optical, the H-band metallic lines, such as Fe ii 16878, never exhibit any evidence of

  18. The effects of HIF-1alpha on gene expression profiles of NCI-H446 human small cell lung cancer cells

    PubMed Central

    2009-01-01

    Background Gene targeted therapy refers to any therapy focused on one of the many biological features of the tumor. Such features are mediated by specific genes that are involved in tumor metastasis, recurrence, poor response to chemotherapy and others. Hypoxia is an important pathognomonic feature of many malignant tumors including SCLC (small cell lung cancer). HIF-1alpha, which is induced by hypoxia, is the most important regulatory factor of many specific genes that can influence the biological features of tumors. Methods In this study, we tried to elucidate the changes in gene expression profiles of SCLC NCI-H446 cells mediated by HIF-1alpha. According to different treatments of cells, three experimental pairwise comparisons were designed: hypoxia group vs. control group, Ad5-HIF-1alpha group vs. Ad5 group, and Ad5-siHIF-1 alpha group Vs Ad5 group. Results Results from the analysis of gene expression profiles indicated that there were 65 genes upregulated and 28 genes downregulated more than two-fold in all three experimental pairwise comparisons. These genes were involved in transport, signal-transduction, cell adhesion/motility, growth factor/cytokines, transcription, inflammatory response, metabolic process, in addition to others. SOCS1, IGFBP5, IL-6 and STAT3 were also upregulated at protein level. SOCS1 could significantly induce apoptosis and suppress growth of NCI-H446 cells but HIF-1alpha could induce growth and suppress apoptosis. Conclusions Through this research, we are trying to find novel functional genes that are mediated by HIF-1alpha and provide the theoretical basis for new therapeutic targets. HIF-1 alpha maybe upregulate the expression of SOCS1 through mediation of STAT3 and IL-6. In addition, SOCS1 could significantly induce apoptosis and suppress growth of NCI-H446 cells. This was contrary to HIF-1alpha and it indicated that there might be an antagonism effect between HIF-1alpha and SOCS1 on regulating growth and apoptosis of NCI-H446

  19. Dynamic Processes in Be Star Atmospheres. IV. Common Attributes of Line Profile ``Dimples''

    NASA Astrophysics Data System (ADS)

    Smith, Myron A.; Plett, K.; Johns-Krull, C. M.; Basri, G. S.; Thomson, J. R.; Aufdenberg, J. P.

    1996-09-01

    "Dimples" are transient central absorption features flanked by weak emissions commonly seen in the He I λ6678 line profile of the mild B2e star λ Eridani. Smith & Polidan have found that these features can be reproduced with a model in which line photons are scattered within an optically thick (in the line) slab elevated over the surface of a rapidly rotating star. We have undertaken a series of simultaneous He I multiline observations of this star at the McMath, McDonald, Lick, David Dunlap, and Ritter Observatories to search for dimples in weak blue He ilines when they appear in λ6678. Four dimples were found during 15 hr of multiobservatory monitoring. In three cases, a dimple was observed in a weak blue line of the same absorption series as λ6678. In the fourth instance, a dimple was observed only in λ5876 and λ5015 lines that, like λ6678, are strong and have weak wings. A joint lUE/optical campaign demonstrated that the He II λ1640 line shows decreases in absorption and possible weak emissions just as new dimples appear in the λ6678 line. Our observations confirm a previous report that dimples appear in the λ6678 line of four other Be stars. We also find that the resonance C iv double weakens when dimples appear, a result similar to that found for λ Eri. Our data also disclosed that "migrating subfeatures" similar to those found in γ Cas are present in the λ6678 line of the B5 star HR 1011. These features appear to be a more vigorous form of dimple activity than observed in λ Eri and other mild Be stars. These findings lend support to the slab model as an explanation for the dimple phenomenon. They also suggest that this activity is endemic to the class of mild Be stars. The appearance of dimples in the weak blue He I lines suggests slab masses of at least 7 x 10-13 Msun for most dimples. The greatest enigma that characterizes classical Be stars is their highly variable and episodic mass-loss histories. Our estimates of dimple-slab masses are

  20. Multi-omic profiling of MYCN-amplified neuroblastoma cell-lines

    PubMed Central

    Dassi, Erik; Greco, Valentina; Sidarovich, Viktoryia; Zuccotti, Paola; Arseni, Natalia; Scaruffi, Paola; Tonini, Gian Paolo; Quattrone, Alessandro

    2015-01-01

    Neuroblastoma is the most common pediatric cancer, arising from the neural crest cells of the sympathetic nervous system. Its most aggressive subtype, characterized by the amplification of the MYCN oncogene, has a dismal prognosis and no effective treatment is available. Understanding the alterations induced by the tumor on the various layers of gene expression is therefore important for a complete characterization of this neuroblastoma subtype and for the discovery of new therapeutic opportunities. Here we describe the profiling of 13 MYCN-amplified neuroblastoma cell lines at the genome (copy number), transcriptome, translatome and miRome levels (GEO series GSE56654, GSE56552 and GSE56655). We provide detailed experimental and data analysis procedures by means of which we derived the results described in [1]. PMID:26697401

  1. Asymmetric Line Profiles in Spectra of Gaseous Metal Disks Around Single White Dwarfs

    NASA Astrophysics Data System (ADS)

    Hartmann, S.; Nagel, T.; Rauch, T.; Werner, K.

    2010-11-01

    Around several single DAZ and DBZ white dwarfs metal-rich disks have been observed, which are mostly believed to originate from disruption of smaller rocky planetesimals. In some cases the material does not (only) form a dusty but gaseous disk. In the case of SDSS J122859.93+104032.9 the double peaked infrared Ca II triplet λλ 8498, 8542, 8662 A˚, one of only two emission features of the spectra, exhibits a strong red/violet asymmetry. Assuming a composition similar to a chondrite-like asteroid, being the most prominent type in our own solar system, we calculated the spectrum and vertical structure of the disk using the Tübingen non-LTE Accretion Disk code AcDc. Modified to simulate different non axis-symmetrical disk geometries, the first preliminary results are in good agreement with the observed asymmetric line profile.

  2. Chromatic line-profile tomography to reveal exoplanetary atmospheres: application to HD 189733b

    NASA Astrophysics Data System (ADS)

    Borsa, F.; Rainer, M.; Poretti, E.

    2016-05-01

    Context. Transmission spectroscopy can be used to constrain the properties of exoplanetary atmospheres. During a transit, the light blocked from the atmosphere of the planet leaves an imprint in the light coming from the star. This has been shown for many exoplanets with both photometry and spectroscopy, using different analysis methods. Aims: We test chromatic line-profile tomography as a new tool to investigate exoplanetary atmospheres. The signal imprinted on the cross-correlation function (CCF) by a planet transiting its star is dependent on the planet-to-star radius ratio. We want to verify whether the precision reachable on the CCF obtained from a subset of the spectral orders of the HARPS spectrograph is high enough to determine the radius of a planet at different wavelengths. Methods: We analyze HARPS archival data of three transits of HD 189733b. We divide the HARPS spectral range into seven broadbands, calculating for each band the ratio between the area of the out-of-transit CCF and the area of the signal imprinted by the planet on it during the full part of the transit. We take into account the effect of the limb darkening using the theoretical coefficients of a linear law. Averaging the results of three different transits allows us to obtain a good-quality broadband transmission spectrum of HD 189733b with a greater precision than that of the chromatic Rossiter McLaughlin effect. Results: We proved that chromatic line-profile tomography is an interesting way to reveal broadband transmission spectra of exoplanets: our analysis of the atmosphere of HD 189733b is in agreement with other ground- and space-based observations. The independent analysis of different transits emphasizes the probability that stellar activity plays a role in the extracted transmission spectrum. Therefore, care should be taken when claiming that Rayleigh scattering is present in the atmosphere of exoplanets orbiting active stars using only one transit.

  3. Line-Profile Analysis of K{I} 7699 in the Sun and in Procyon

    NASA Astrophysics Data System (ADS)

    Takeda, Yoichi; Kato, Ken-Ichi; Watanabe, Yoshiya; Sadakane, Kozo

    1996-06-01

    The profiles of the resonance line of potassium (KI 7698.98) in the flux spectrum of the Sun and Procyon were studied in detail using the multi-parameter fitting method, in order to extract information regarding the fundamental atomic parameters responsible for the formation of this line as well as to diagnose the nature of the velocity fields in their atmospheres. It was concluded from an analysis of the solar KI 7699 profil e that neutral-hydrogen collisions are practically negligible compared to electron collisions in the rate equation of statistical equilibrium, and that an empirical correcti on to the Uns{o}ld's standard (van der Waals effect) damping constant is Delta log C6 =~ +1.0 with the most consistent microturbulent velocity of xi =~ 0.8 km s(-1) . Based upon these results, the atmospheric-velocity parameters of Procyon were determined to be xi =~ 1.4 km s(-1) , zeta_RT =~ 6.7 km s(-1) (the radial-tangential macroturbulence), and v_esin i =~ 3.3 km s(-1) (the projected rotational velocity). The potassium abundances of the Sun and Procyon derived from this resonance lin e, which are significantly affected by the non-LTE effect amounting to ~ 0.4 dex (Sun) and ~ 0.7 dex (Procyon), turned out to be nearly the same and log epsilon_K =~ 5.1. It also appears that the microturbulence tends to decrease with an increase in the atmospheric height of the Sun as well as of Procyon.

  4. Learning abilities, NGF and BDNF brain levels in two lines of TNF-alpha transgenic mice, one characterized by neurological disorders, the other phenotypically normal.

    PubMed

    Aloe, L; Properzi, F; Probert, L; Akassoglou, K; Kassiotis, G; Micera, A; Fiore, M

    1999-09-01

    In this study we used two lines of transgenic mice overexpressing tumor necrosis factor alpha (TNF-alpha) in the central nervous system (CNS), one characterized by reactive gliosis, inflammatory demyelination and neurological deficits (Tg6074) the other showing no neurological or phenotypical alterations (TgK3) to investigate the effect of TNF-alpha on brain nerve growth factor (NGF) and brain-derived neurotrophic factor (BDNF) levels and learning abilities. The results showed that the amount of NGF in the brain of Tg6074 and TgK3 transgenic mice is low in the hippocampus and in the spinal cord, increases in the hypothalamus of Tg6074 and showed no significant changes in the cortex. BDNF levels were low in the hippocampus and spinal cord of TgK3. BDNF increased in the hypothalamus of TgK3 and Tg6074 while in the cortex, BDNF increased only in Tg6074 mice. Transgenic mice also had memory impairments as revealed by the Morris Water Maze test. These findings indicate that TNF-alpha significantly influences BDNF and NGF synthesis, most probably in a dose-dependent manner. Learning abilities were also differently affected by overexpression of TNF-alpha, but were not associated with inflammatory activity. The possible functional implications of our findings are discussed. PMID:10517960

  5. [Hydroxysafflor yellow A up-regulates HIF-1alpha via inhibition of VHL and p53 in Eahy 926 cell line exposed to hypoxia].

    PubMed

    Lian, Ze-Qin; Zhao, Da-Long; Zhu, Hai-Bo

    2008-05-01

    In present study, we investigated the mechanism of regulating HIF-1alpha expression by hydroxysafflor yellow A (HSYA) in Eahy 926 cell line under 1% O2 hypoxia. Eahy 926 cells were incubated with HSYA (100, 10 and 1 micromol x L(-1)) under hypoxia for the indicated time after treatment. Cell proliferation rate was detected using MTT assays. VHL and p53 location and protein expression were analyzed by immunocytochemical stain. HIF-1alpha, VHL and p53 mRNA expression were detected by RT-PCR. Protein expression of HIF-1alpha, VHL and p53 were assayed by Western blotting method. HSYA at 100 micromol x L(-1) increased Eahy 926 cells proliferation rate under hypoxia. HIF-1alpha mRNA and protein expression were up-regulated in the presence of HSYA. VHL, p53 mRNA and protein expression decreased significantly after 8 hours of treatment under hypoxia. HSYA protected Eahy 926 cells from hypoxia, and up-regulated HIF-1alpha expression partially via its inhibition of VHL and p53 expression. PMID:18717335

  6. Unique broad-line profile variations in the radio galaxy 3C 390. 3

    SciTech Connect

    Veilleux, S.; Zheng, Wei Alabama, University, Tuscaloosa )

    1991-08-01

    The results of a variability study of the flux and profile of H-beta in 3C 390.3 are presented. Spectra of this object were obtained at 39 epochs during the years 1974-1988. It is shown that the fluctuations of the H-beta flux closely mimic the variations of the optical continuum during that period. The time scale for the emission-line variations is shorter than a year, and perhaps as short as a month. The blue side of the H-beta profile ('blue bump') also followed closely the continuum variations, but the red side ('red bump') did not. The ratio of the fluxes of the blue and red bumps behaved in a very regular, nearly sinusoidal fashion. It reached a maximum in mid-1975 and at the end of 1985, a time interval of 10.4 yr. The velocity of the peak of the blueshifted bump drifted by +900 km/s during the 14-yr interval covered by the observations. 103 refs.

  7. The effect of line-tying on the radiative MHD stability of coronal plasmas with radial pressure profile

    NASA Technical Reports Server (NTRS)

    An, C.-H.

    1984-01-01

    The role of photospheric line-tying, i.e., solar coronal loop structures, was investigated in terms of the effect on radiative modes and the influence that different radial pressure profiles exert on the effects of line-tying on radiative MHD stability. Energy is assumed dissipated by heat conduction and radiation and zero- and first-order solutions are obtained for the radiative time scales. Line-tying is a magnetic tension in the zero-order MHD mode and produces stability. Heat conduction occurs along bent field lines in first-order MHD modes when plasmas cross the field lines. Irradiated cool-core loops can experience MHD instabilities in the cylinder center, while line-tying can stabilize the plasma in the surrounding hot medium. Line-tying also adds stability to magnetosonic and condensation modes.

  8. Precision Fe K-Alpha and Fe K-Beta Line Spectroscopy of the Seyfert 1.9 Galaxy NGC 2992 with Suzaku

    NASA Technical Reports Server (NTRS)

    Yaqoob, Tahir; Murphy, Kendrah D.; Griffiths, Richard E.; Haba, Yoshito; Inoue, Hajime; Itoh, Takeshi; Kelley, Richard; Kokubun, Motohide; Markowitz, Alex; Mushotzky, Richard; Okajima, Takashi; Ptak, Andrew; Reeves, James; Selemitos, Peter J.; Takahashi, Tadayuki; Terashima, Yuichi

    2006-01-01

    We present detailed time-averaged X-ray spectroscopy in the 0.5-10 keV band of the Seyfert 1.9 galaxy NGC 2992 with the Suzaku X-ray Imaging Spectrometers (XIS). The source had a factor approximately 3 higher 2-10 keV flux (approximately 1.2 x l0(exp -11) erg per square cm per s) than the historical minimum and a factor approximately 7 less than the historical maximum. The XIS spectrum of NGC 2992 can be described by several components. There is a primary continuum, modeled as a power-law with a photon index of Gamma = 1.57(sup +0.06) (sup -0.03) that is obscured by a Compton-thin absorber with a column density of 8.01(sup +0.6) (sup -0.5)x l0 (exp 21) per square cm. . There is another, weaker, unabsorbed power-law component (modeled with the same slope as the primary), that is likely to be due to the primary continuum being electron-scattered into our line-of-sight by a region extended on a scale of hundreds of parsecs. We measure the Thomson depth of the scattering zone to be Tau = 0.072 +/- 0.021. An optically-thin thermal continuum emission component, which probably originates in the same extended region, is included in the model and yields a temperature and luminosity of KT = 0.656(sup +0.088) (sup -0.0.61) keV and approximately 1.2 +/- 0.4 x l0 (exp 40) erg per s respectively. We detect an Fe K emission complex which we model with broad and narrow lines and we show that the intensities of the two components are decoupled at a confidence level > 3 sigma. The broad Fe K alpha line has an equivalent width of 118(sup +32) (sup -61) eV and could originate in an accretion disk (with inclination angle greater than approximately 30 deg) around the putative central black hole. The narrow Fe K alpha line has an equivalent width of 1632(sup +47) (sup -26) eV and is unresolved (FWHM < 4630 km per s) and likely originates in distant matter. The absolute flux in the narrow line implies that the column density out of the line-of-sight could be much higher than measured in

  9. Uterine Epithelial Cell Estrogen Receptor Alpha-Dependent and -Independent Genomic Profiles That Underlie Estrogen Responses in Mice1

    PubMed Central

    Winuthayanon, Wipawee; Hewitt, Sylvia C.; Korach, Kenneth S.

    2014-01-01

    ABSTRACT Estrogens exert their activity through estrogen receptor alpha (ERalpha) to stimulate hypertrophy and hyperplasia in the uterus. A uterine epithelial ERalpha conditional knockout mouse model (Wnt7aCre+;Esr1f/f or cKO) demonstrated that ERalpha in the epithelial cells was dispensable for an initial uterine proliferative response to 17beta-estradiol (E2) but required for subsequent uterine biological responses. This study aimed to characterize the differential gene expression patterns induced by E2 in the presence or absence of epithelial ERalpha. RNA microarray analysis revealed that approximately 20% of the genes differentially expressed at 2 h were epithelial ERalpha independent, as they were preserved in the cKO uteri. This indicates that early uterine transcripts mediated by stromal ERalpha are sufficient to promote initial proliferative responses. However, more than 90% of the differentially expressed transcripts at 24 h were not regulated in the cKO, indicating that the majority of later transcriptional regulation required epithelial ERalpha, especially those involved in mitosis. This shows that loss of regulation of these later transcripts results in blunted subsequent uterine growth after 3 days of E2 treatment. Additionally, progesterone's ability to inhibit E2-induced epithelial cell proliferation was impaired, consistent with a uterine receptivity defect that contributes to cKO infertility. These transcriptional profiles correlate with our previously observed biological responses, in which the initial proliferative response is independent of epithelial ERalpha and thus dependent on stromal ERalpha, yet epithelial ERalpha is essential for subsequent tissue responsiveness. PMID:25210133

  10. Anxiolytic-like effects and safety profile of a tryptic hydrolysate from bovine alpha s1-casein in rats.

    PubMed

    Messaoudi, Michaël; Lalonde, Robert; Schroeder, Henri; Desor, Didier

    2009-06-01

    The anxiolytic activity and adverse benzodiazepine-like effects of a bovine alpha s1-casein tryptic hydrolysate (CH) were evaluated. The effects of CH orally administered at doses of 5 and 15 mg/kg were compared with those of diazepam (DZ) at 3 mg/kg in the conditioned defensive burying test. Rats treated either with CH at 15 mg/kg or with DZ showed a decrease in anxiety. A drug-related difference was observed in terms of duration, as the anxiolytic-like action of CH was maintained after 7 days with twice-daily administration, whereas that of DZ was not. CH and DZ were then evaluated for their potential effects on memory in a passive avoidance paradigm. CH-treated rats had significantly longer latencies before entering the dark compartment where they were previously delivered a shock, indicating better retention relative to DZ-treated rats. In the final test, CH and DZ were evaluated for place preference, an index of the possible addictive potential of these substances. DZ-treated rats spent more time in the compartment associated with drug exposure than control rats. This effect was not found in CH-treated rats. Thus, CH did not display side effects associated with DZ, despite its affinity for gamma-aminobutyric acid(A) (GABA(A)) receptors. Specific linking of CH on GABA(A) receptor function involved in anxiolysis, but not on that implied in memory-impairing effects, may be hypothesized to explain its specific activity. This profile might render it advantageous for nutritional purposes. PMID:19453759

  11. Extracellular matrix proteins expression profiling in chemoresistant variants of the A2780 ovarian cancer cell line.

    PubMed

    Januchowski, Radosław; Zawierucha, Piotr; Ruciński, Marcin; Nowicki, Michał; Zabel, Maciej

    2014-01-01

    Ovarian cancer is the leading cause of death among gynaecological malignancies. Extracellular matrix (ECM) can affect drug resistance by preventing the penetration of the drug into cancer cells and increased resistance to apoptosis. This study demonstrates alterations in the expression levels of ECM components and related genes in cisplatin-, doxorubicin-, topotecan-, and paclitaxel-resistant variants of the A2780 ovarian cancer cell line. Affymetrix Gene Chip Human Genome Array Strips were used for hybridisations. The genes that had altered expression levels in drug-resistant sublines were selected and filtered by scatter plots. The genes that were up- or downregulated more than fivefold were selected and listed. Among the investigated genes, 28 genes were upregulated, 10 genes were downregulated, and two genes were down- or upregulated depending on the cell line. Between upregulated genes 12 were upregulated very significantly--over 20-fold. These genes included COL1A2, COL12A1, COL21A1, LOX, TGFBI, LAMB1, EFEMP1, GPC3, SDC2, MGP, MMP3, and TIMP3. Four genes were very significantly downregulated: COL11A1, LAMA2, GPC6, and LUM. The expression profiles of investigated genes provide a preliminary insight into the relationship between drug resistance and the expression of ECM components. Identifying correlations between investigated genes and drug resistance will require further analysis. PMID:24804215

  12. Extracellular Matrix Proteins Expression Profiling in Chemoresistant Variants of the A2780 Ovarian Cancer Cell Line

    PubMed Central

    Januchowski, Radosław; Zawierucha, Piotr; Ruciński, Marcin; Nowicki, Michał; Zabel, Maciej

    2014-01-01

    Ovarian cancer is the leading cause of death among gynaecological malignancies. Extracellular matrix (ECM) can affect drug resistance by preventing the penetration of the drug into cancer cells and increased resistance to apoptosis. This study demonstrates alterations in the expression levels of ECM components and related genes in cisplatin-, doxorubicin-, topotecan-, and paclitaxel-resistant variants of the A2780 ovarian cancer cell line. Affymetrix Gene Chip Human Genome Array Strips were used for hybridisations. The genes that had altered expression levels in drug-resistant sublines were selected and filtered by scatter plots. The genes that were up- or downregulated more than fivefold were selected and listed. Among the investigated genes, 28 genes were upregulated, 10 genes were downregulated, and two genes were down- or upregulated depending on the cell line. Between upregulated genes 12 were upregulated very significantly—over 20-fold. These genes included COL1A2, COL12A1, COL21A1, LOX, TGFBI, LAMB1, EFEMP1, GPC3, SDC2, MGP, MMP3, and TIMP3. Four genes were very significantly downregulated: COL11A1, LAMA2, GPC6, and LUM. The expression profiles of investigated genes provide a preliminary insight into the relationship between drug resistance and the expression of ECM components. Identifying correlations between investigated genes and drug resistance will require further analysis. PMID:24804215

  13. Density profile of a line plasma generated by laser ablation for laser wakefield acceleration

    NASA Astrophysics Data System (ADS)

    Kim, J.; Hwangbo, Y.; Ryu, W.-J.; Kim, K. N.; Park, S. H.

    2016-03-01

    An elongated line plasma generated by a laser ablation of an aluminum target was investigated, which can be used in the laser wakefield acceleration (LWFA) by employing ultra-intense laser pulse through the longitudinal direction of the plasma. To generate a uniform and long plasma channel along the propagation of ultra-intense laser pulse (main pulse), a cylindrical lens combined with a biprism was used to shape the intensity of a ns Nd:YAG laser (pre-pulse) on the Al target. A uniformity of laser intensity can be manipulated by changing the distance between the biprism and the target. The density profile of the plasma generated by laser ablation was measured using two interferometers, indicating that a 3-mm long uniform line plasma with a density of 6 × 1017 cm-3 could be generated. The density with main pulse was also measured and the results indicated that the density would increase further due to additional ionization of the plasma by the main ultra-intense laser pulse. The resulting plasma density, which is a crucial parameter for the LWFA, can be controlled by the intensity of the pre-pulse, the time delay between the pre- and main pulse, and the distance of the main pulse from the target surface.

  14. Hour-timescale profile variations in the broad Balmer lines of the Seyfert galaxy Hour-timescale profile variations in the broad Balmer lines of the Seyfert galaxy Markarian 6

    NASA Astrophysics Data System (ADS)

    Asatrian, Norayr S.

    2014-07-01

    Part of results of the multi-epoch intranight optical spectroscopic monitoring of the Markarian 6 nucleus carried out at the telescopes of 6-m of the Special Astrophysical Observatory (Russia), 2.6-m of the Byurakan Astrophysical Observatory (Armenia) and 2-m of the Tautenburg Observatory (Germany) is presented. Observations were made in 1979, 1986, 1988-1991 and 2007-2009 during a total of 33 nights with an average sampling rate of 4 spectra per night. TV-scanner and long-slit spectrographs equipped with Image Tube and CCD detector arrays were used. Altogether we analyzed 110 Hβ and 58 Hα region spectra to search for intranight variability in the broad hydrogen emission line profiles. The typical spectral resolutions were 4 Å for scanner spectra, 6 Å for photographic spectra, and 5 Å and 10 Å for CCD spectra. The S/N ratio at the continuum level near the Hβ and Hα lines was in the range 15-50. The purpose of the search was to look for the characteristic variability signatures of different kinematical models of the broad emission-line region. We considered the centering and guiding errors which can result in differences between spectra. We found variations in the broad Balmer line difference profiles on time scale of hour with the level of significance of 3.6 σ to 5.0 σ. Variations take the form of narrow, small bumps located at the blue and red sides or only at the blue side of the lines. In the intermediate level of broad line flux, the Hβ and Hα profiles show fine structure. Detected profile changes occurred at the same radial velocity shifts as the details in the fine structure. The variability is at least 2 orders of magnitude more rapid than any observed for broad Balmer line profiles in AGNs that we are aware of in the literature. Discovered extremely rapid line-profile variability may be associated with reverberation effects. Two-sided profile changes may indicate the response of circularly rotating hydrogen clouds in the BLR to a light pulse

  15. The Relativistic Iron Line Profile in the Seyfert 1 Galaxy IC4329a

    NASA Technical Reports Server (NTRS)

    Done, C.; Madejski, G. M.; Zycki, P. T.

    2000-01-01

    We present simultaneous ASCA and RXTE data on the bright Seyfert 1 galaxy IC4329a. The iron line is significantly broadened, but not to the extent expected from an accretion disk which extends down to the last stable orbit around a black hole. We marginally detect a narrow line component, presumably from the molecular torus, but, even including this gives a line profile from the accretion disk which is significantly narrower that that seen in MCG-6-30-15, and is much more like that seen from the low/hard state galactic black hole candidates. This is consistent with the inner disk being truncated before the last stable orbit, forming a hot flow at small radii as in the ADAF models. However. we cannot rule out the presence of an inner disk which does not contribute to the reflected spectrum. either because of extreme ionisation suppressing the characteristic atomic features of the reflected spectrum or because the X-ray source is intrinsically anisotropic, so it does not illuminate the inner disk. The source was monitored by RXTE every 2 days for 2 months, and these snapshot spectra show that there is intrinsic spectral variability. The data are good enough to disentangle the power law from the reflected continuum and we see that the power law softens as the source brightens. The lack of a corresponding increase in the observed reflected spectrum implies that either the changes in disk inner radial extent/ionization structure are small, or that the variability is actually driven by changes in the seed photons which are decoupled from the hard X-ray mechanism.

  16. Determination of line profiles on nano-structured surfaces using EUV and x-ray scattering

    NASA Astrophysics Data System (ADS)

    Soltwisch, Victor; Wernecke, Jan; Haase, Anton; Probst, Jürgen; Schoengen, Max; Krumrey, Michael; Scholze, Frank; Pomplun, Jan; Burger, Sven

    2014-09-01

    Non-imaging techniques like X-ray scattering are supposed to play an important role in the further development of CD metrology for the semiconductor industry. Grazing Incidence Small Angle X-ray Scattering (GISAXS) provides directly assessable information on structure roughness and long-range periodic perturbations. The disadvantage of the method is the large footprint of the X-ray beam on the sample due to the extremely shallow angle of incidence. This can be overcome by using wavelengths in the extreme ultraviolet (EUV) spectral range, EUV small angle scattering (EUVSAS), which allows for much steeper angles of incidence but preserves the range of momentum transfer that can be observed. Generally, the potentially higher momentum transfer at shorter wavelengths is counterbalanced by decreasing diffraction efficiency. This results in a practical limit of about 10 nm pitch for which it is possible to observe at least the +/- 1st diffraction orders with reasonable efficiency. At the Physikalisch-Technische Bundesanstalt (PTB), the available photon energy range extends from 50 eV up to 10 keV at two adjacent beamlines. PTB commissioned a new versatile Ellipso-Scatterometer which is capable of measuring 6" square substrates in a clean, hydrocarbon-free environment with full flexibility regarding the direction of the incident light polarization. The reconstruction of line profiles using a geometrical model with six free parameters, based on a finite element method (FEM) Maxwell solver and a particle swarm based least-squares optimization yielded consistent results for EUV-SAS and GISAXS. In this contribution we present scatterometry data for line gratings and consistent reconstruction results of the line geometry for EUV-SAS and GISAXS.

  17. Hydrogen Ly-α and Ly-β full Sun line profiles observed with SUMER/SOHO (1996-2009)

    NASA Astrophysics Data System (ADS)

    Lemaire, P.; Vial, J.-C.; Curdt, W.; Schühle, U.; Wilhelm, K.

    2015-09-01

    Context. Accurate hydrogen spectra emitted by the entire solar disc in the Ly-α and Ly-βlines are valuable for deriving the distribution and the behaviour of atomic hydrogen in the heliosphere, for understanding the UV emissions of solar type stars better, and finally for estimating the solar energy input that mainly initiates the chemical processes occurring in the planetary and cometary outer atmospheres. Aims: In this paper we want to accurately determine the irradiance solar spectral profiles of Ly-α and Ly-β and their evolution through the solar activity cycle 23. Methods: The SUMER/SOHO spectrometer is a slit spectrometer that is only able to analyse a small part of the solar image. Consequently, we used the scattered light properties of the telescope to obtain average spectra over the solar disc. Then the profile is calibrated using the SOLSTICE/UARS and TIMED/SEE irradiance spectra. Results: We obtained a set of irradiance Ly-α and Ly-β solar spectra with a 0.002 nm resolution through the solar activity cycle 23. In each line a relation between the integrated profile and the line centre intensity was obtained.Knowing the line irradiance, it is possible to deduce the central line profile intensity, a critical input into the interplanetary and planetary oxygen and hydrogen fluorescent processes. Conclusions: The observation of H i Ly-α and Ly-β line profiles by SUMER/SOHO during the cycle 23 allows analysis of the evolution of their characteristics and accurate determination of UV radiation input into the solar system. Profiles are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/581/A26

  18. Modelling supernova line profile asymmetries to determine ejecta dust masses: SN 1987A from days 714 to 3604

    NASA Astrophysics Data System (ADS)

    Bevan, Antonia; Barlow, M. J.

    2016-02-01

    The late-time optical and near-IR line profiles of many core-collapse supernovae exhibit a red-blue asymmetry as a result of greater extinction by internal dust of radiation emitted from the receding parts of the supernova ejecta. We present here a new code, DAMOCLES, that models the effects of dust on the line profiles of core-collapse supernovae in order to determine newly formed dust masses. We find that late-time dust-affected line profiles may exhibit an extended red scattering wing (as noted by Lucy et al. 1989) and that they need not be flux-biased towards the blue, although the profile peak will always be blueshifted. We have collated optical spectra of SN 1987A from a variety of archival sources and have modelled the Hα line from days 714 to 3604 and the [O I] 6300,6363 Å doublet between days 714 and 1478. Our line profile fits rule out day 714 dust masses >3 × 10-3 M⊙ for all grain types apart from pure magnesium silicates, for which no more than 0.07 M⊙ can be accommodated. Large grain radii ( ≥ 0.6 μm) are generally required to fit the line profiles even at the earlier epochs. We find that a large dust mass (≥0.1 M⊙) had formed by day 3604 and infer that the majority of the present dust mass must have formed after this epoch. Our findings agree with recent estimates from spectral energy distribution fits for the dust mass evolution of SN 1987A and support the inference that the majority of SN 1987A's dust formed many years after the initial explosion.

  19. Lyman alpha radiation in external galaxies

    NASA Technical Reports Server (NTRS)

    Neufeld, David A.; Mckee, Christopher F.

    1990-01-01

    The Ly alpha line of atomic hydrogen is often a luminous component of the radiation emitted by distant galaxies. Except for those galaxies which have a substantial central source of non-stellar ionizing radiation, most of the Ly alpha radiation emitted by galaxies is generated within regions of the interstellar medium which are photoionized by starlight. Conversely, much of the energy radiated by photoionized regions is carried by the Ly alpha line. Only hot, massive stars are capable of ionizing hydrogen in the interstellar medium which surrounds them, and because such stars are necessarily short-lived, Ly alpha emission traces regions of active star formation. Researchers argue that the strength of the Ly alpha emission observed from external galaxies may be used to estimate quantitatively the dust content of the emitting region, while the Ly alpha line profile is sensitive to the presence of shock waves. Interstellar dust particles and shock waves are intimately associated with the process of star formation in two senses. First, both dust particles and shock waves owe their existence to stellar activity; second, they may both serve as agents which facilitate the formation of stars, shocks by triggering gravitational instabilities in the interstellar gas that they compress, and dust by shielding star-forming molecular clouds from the ionizing and dissociative effects of external UV radiation. By using Ly alpha observations as a probe of the dust content in diffuse gas at high redshift, we might hope to learn about the earliest epochs of star formation.

  20. Seasonal Variations in the CO Line Profile and the Retrieved Thermal/Pressure Structures in the Atmosphere of Mars

    NASA Astrophysics Data System (ADS)

    Khayat, Alain; Villanueva, G. L.; Mumma, M. J.; Riesen, T. E.; Tokunaga, A. T.

    2013-10-01

    We report retrievals of temperature vertical profiles up to 100 km over Tharsis and Syrtis regions on Mars obtained by inverting the strong rotational (3-2) line of carbon monoxide (CO) at 346 GHz. Observations of CO were made from mid Northern Spring to early Northern Summer on Mars (Ls= 36°-108°, 23 Nov, 2011 - 13 May, 2012) using the Caltech Submillimeter Observatory's (CSO) high-resolution heterodyne receiver (Barney) on top of Mauna Kea, Hawai'i. The temperature profiles were derived using our radiative transfer model that considers the latest spectroscopic constants for CO collisionally broadened by CO2. We observe notable changes of the line profile for different dates, which are directly related to seasonal variations in the thermal/pressure structure of the atmosphere. The seasonal variability of the martian CO line profile, the extracted temperature profiles, and comparisons with modeled profiles from the Mars Climate Database (Lewis et al, 1999) will be presented. We gratefully acknowledge support from the NASA Planetary Astronomy Program , NASA Astrobiology Institute, Planetary Atmospheres programs. This material is based upon work at the Caltech Submillimeter Observatory, which is operated by the California Institute of Technology under cooperative agreement with the National Science Foundation, grant number AST-0838261.

  1. The morphologies of breast cancer cell lines in three-dimensionalassays correlate with their profiles of gene expression

    SciTech Connect

    Kenny, Paraic A.; Lee, Genee Y.; Myers, Connie A.; Neve, RichardM.; Semeiks, Jeremy R.; Spellman, Paul T.; Lorenz, Katrin; Lee, Eva H.; Barcellos-Hoff, Mary Helen; Petersen, Ole W.; Gray, Joe W.; Bissell, MinaJ.

    2007-01-31

    3D cell cultures are rapidly becoming the method of choice for the physiologically relevant modeling of many aspects of non-malignant and malignant cell behavior ex vivo. Nevertheless, only a limited number of distinct cell types have been evaluated in this assay to date. Here we report the first large scale comparison of the transcriptional profiles and 3D cell culture phenotypes of a substantial panel of human breast cancer cell lines. Each cell line adopts a colony morphology of one of four main classes in 3D culture. These morphologies reflect, at least in part, the underlying gene expression profile and protein expression patterns of the cell lines, and distinct morphologies were also associated with tumor cell invasiveness and with cell lines originating from metastases. We further demonstrate that consistent differences in genes encoding signal transduction proteins emerge when even tumor cells are cultured in 3D microenvironments.

  2. Caustics and Caustic-Diffraction in Laser Shadowgraphy of a Sessile Drop and Identification of Profile Near Contact Line

    NASA Technical Reports Server (NTRS)

    Zhang, Neng-Li; Chao, David F.

    2003-01-01

    This paper presents an optical method based on the caustics and caustic-difraction in laser shadowgaphy of a sessile drop to identify and estimate the drop profile near the contact line. A parallel laser beam passes through a liquid sessile drop placed on a transparent substrate to produce a shadowgraphic image of the drop on the screen far from the substrate. Along the inflection line of the drop the Gaussian curvature of the wavefront deformed by the drop vanishes, and therefore the inflection line gives caustics in the far field of the wave, which can be seen on the screen. The neighboring light rays at both sides of the inflection line interfere with each other to form interference fringes at the inner side of the caustics. According to the pattern of the caustics, the drop-profile shape can be identified and estimated.

  3. Drug transporter expression profiling in chemoresistant variants of the A2780 ovarian cancer cell line.

    PubMed

    Januchowski, Radosław; Zawierucha, Piotr; Ruciński, Marcin; Andrzejewska, Małgorzata; Wojtowicz, Karolina; Nowicki, Michał; Zabel, Maciej

    2014-05-01

    Ovarian cancer is characterized by the higher mortality among gynecological cancers. In results of MDR development during chemotherapy cancer cells become resistant to further treatment. Microarray techniques can provide information about MDR development at gene expression level. ABC and SLC transporters are most important proteins responsible for this phenomenon. In this study changes of ABC and SLC genes expression pattern in drugs resistant sublines of the A2780 ovarian cancer cell line were demonstrated. The cytostatic resistant sublines were generated by culture of A2780 cell line with an increasing concentration of the indicated drugs. As screening methods, we used Affymetrix U219 Human Genome microarrays. Independent t-tests were used to determinate statistical significances of results. Genes that expression levels were higher than assumed threshold (upregulated above threefold and downregulated under -3 fold) were visualized using scatter plot method, selected and listed in table. Between the ABC genes increased expression of seven genes and decreased expression of three genes were observed. Expression of two genes was increased or decreased depending on the cell line. We observed significant (more than tenfold) increase in expression of four ABC genes: ABCA8, ABCB1, ABCB4 and ABCG2 and decreased expression of ABCA3 gene. We also observed changes in expression of 32 SLC genes. Between them we observe increased expression of 17 genes and decreased expression of 15 genes. Expression of four genes was increased or decreased dependent on cell line. The expression of nine SLC genes increased or decreased very significantly (more than tenfold). Five genes were significantly upregulated: SLC2A9, SLC16A3, SLC16A14, SLC38A4 and SLC39A8. Four additional genes were significantly downregulated: SLC2A14, SLC6A15, SLC8A1 and SLC27A2. Expression profiles of these genes give strong arguments for assumption of correlation between expression of ABC and SLC genes and drug

  4. Differential metabolite profiles and salinity tolerance between two genetically related brown-seeded and yellow-seeded Brassica carinata lines.

    PubMed

    Canam, Thomas; Li, Xiang; Holowachuk, Jennifer; Yu, Min; Xia, Jianguo; Mandal, Rupasri; Krishnamurthy, Ramanarayan; Bouatra, Souhaila; Sinelnikov, Igor; Yu, Bianyun; Grenkow, Larry; Wishart, David S; Steppuhn, Harold; Falk, Kevin C; Dumonceaux, Tim J; Gruber, Margaret Y

    2013-01-01

    Brassica carinata (Ethiopian mustard) has previously been identified as a potential crop species suitable for marginal land in the North American prairies due to its relatively high salt tolerance. Two genetically related B. carinata lines with brown-seeded (BS) and yellow-seeded (YS) phenotypes were assessed for their tolerance to sodium sulfate. Specifically, each line was greenhouse-grown under 0, 50 and 100mM of salt, and analyzed after four weeks and eight weeks of treatment. Generally, the height of the BS line was greater than the YS line under both salt treatments, indicating enhanced salt tolerance of the BS line. NMR-based metabolite profiling and PCA analyses indicated a more pronounced shift in key stem metabolites after four weeks of treatment with the YS line compared to the BS line. For example, tryptophan and formate levels increased in the YS line after four weeks of 100mM salt treatment, while proline and threonine levels varied uniquely compared to other metabolites of the lines. Together, the data indicate that the brown-seeded line has greater sodium tolerance than the yellow-seed line, provide clues to the biochemical underpinnings for the phenotypic variation, and highlight the utility of B. carinata as a biorefinery crop for saline land. PMID:23199683

  5. Search for rapid H-alpha variability studies in Be stars - 28 Eri, X Ophiuchi, 66 Ophiuchi and Pi Aquarii

    NASA Astrophysics Data System (ADS)

    Ghosh, K. K.

    1988-10-01

    In order to search for rapid H&alpha; variability in Be stars, a series of H&alpha; profiles were observed on a time scale of few minutes for 28 Eri, X Oph, 66 Oph and π Aqr. In total, 95 and 54 H&alpha; profiles were obtained for the program Be stars and the standard stars respectively. The theoretical expression of Chalabaev and Maillard (1983) was used to estimate the uncertainty of the H&alpha; equivalent width measurements. It is found that rapid variations of continuum level and equivalent widths of H&alpha; line are absent.

  6. Profiling mitochondrial proteins in radiation-induced genome-unstable cell lines with persistent oxidative stress by mass spectrometry

    SciTech Connect

    Miller, John H.; Jin, Shuangshuang; Morgan, William F.; Yang, Austin; Wan, Yunhu; Aypar, Umut; Peters, Jonathan S.; Springer, David L.

    2008-06-01

    Radiation-induced genome instability (RIGI) is a response to radiation exposure in which the progeny of surviving cells exhibit increased frequency of chromosomal changes many generations after the initial insult. Persistently elevated oxidative stress accompanying RIGI and the ability of free-radical scavengers, given before irradiation, to reduce the incidence of instability suggest that radiation induced alterations to mitochondrial function likely play a role in RIGI. To further elucidate this mechanism, we performed high-throughput quantitative mass spectrometry on samples enriched in mitochondrial proteins from three chromosomally-unstable GM10115 Chinese-hamster-ovary cell lines and their stable parental cell line. Out of several hundred identified proteins, sufficient data were collected on 74 mitochondrial proteins to test for statistically significant differences in their abundance between unstable and stable cell lines. Each of the unstable cell lines showed a distinct profile of statistically-significant differential abundant mitochondrial proteins. The LS-12 cell line was characterized by 8 downregulated proteins, whereas the CS-9 cell line exhibited 5 distinct up-regulated proteins. The unstable 115 cell line had two down-regulated proteins, one of which was also downregulated in LS-12, and one up-regulated protein relative to stable parental cells. The mitochondrial protein profiles for LS-12 and C-9 provide further evidence that mitochondrial dysfunction is involved in the genome instability of these cell lines.

  7. Measurements of nuclear {gamma}-ray line emission in interactions of protons and {alpha} particles with N, O, Ne, and Si

    SciTech Connect

    Benhabiles-Mezhoud, H.; Kiener, J.; Thibaud, J.-P.; Tatischeff, V.; Deloncle, I.; Coc, A.; Duprat, J.; Hamadache, C.; Lefebvre-Schuhl, A.; Dalouzy, J.-C.; Grancey, F. de; Oliveira, F. de; Dayras, F.; Sereville, N. de; Pellegriti, M.-G.; Lamia, L.; Ouichaoui, S.

    2011-02-15

    {gamma}-ray production cross sections have been measured in proton irradiations of N, Ne, and Si and {alpha}-particle irradiations of N and Ne. In the same experiment we extracted also line shapes for strong {gamma}-ray lines of {sup 16}O produced in proton and {alpha}-particle irradiations of O. For the measurements gas targets were used for N, O, and Ne and a thick foil for Si. All targets were of natural isotopic composition. Beams in the energy range up to 26 MeV for protons and 39 MeV for {alpha} particles were delivered by the Institut de Physique Nucleaire-Orsay tandem accelerator. The {gamma} rays were detected with four high-purity Ge detectors in the angular range 30 deg. to 135 deg. We extracted 36 cross-section excitation functions for proton reactions and 14 for {alpha}-particle reactions. For the majority of the excitation functions no other data exist to our knowledge. Where comparison with existing data was possible, usually a very good agreement was found. It is shown that these data are very interesting for constraining nuclear reaction models. In particular, the agreement of cross section calculations in the nuclear reaction code talys with the measured data could be improved by adjusting the coupling schemes of collective levels in the target nuclei {sup 14}N, {sup 20,22}Ne, and {sup 28}Si. The importance of these results for the modeling of nuclear {gamma}-ray line emission in astrophysical sites is discussed.

  8. Measurements of Spatial Line Emission Profiles in the Main Scrape-Off Layer of the DIII-D Tokamak

    SciTech Connect

    Groth, M; Ellis, R; Brooks, N; Fenstermacher, M; Lasnier, C; Meyer, W; Moller, J

    2009-06-05

    A video camera system is described that measures the spatial distribution of visible line emission emitted from the main scrape-off layer (SOL) of plasmas in the DIII-D tokamak. A wide-angle lens installed on an equatorial port and an in-vessel mirror which intercepts part of the lens view provide simultaneous tangential views of the SOL on the low-field and high-field sides of the plasma's equatorial plane. Tomographic reconstruction techniques are used to calculate the 2-D poloidal profiles from the raw data, and 1-D poloidal profiles simulating chordal views of other optical diagnostics from the 2-D profiles. The 2-D profiles can be compared with SOL plasma simulations; the 1-D profiles with measurements from spectroscopic diagnostics. Sample results are presented which elucidate carbon transport in plasmas with toroidally uniform injection of methane and argon transport in disruption mitigation experiments with massive gas jet injection.

  9. Authentication of newly established human esophageal squamous cell carcinoma cell line (YM-1) using short tandem repeat (STR) profiling method.

    PubMed

    Ayyoob, Khosravi; Masoud, Khoshnia; Vahideh, Kazeminejad; Jahanbakhsh, Asadi

    2016-03-01

    Cross-contamination during or early after establishment of a new cell line could result in the worldwide spread of a misidentified cell line. Therefore, newly established cell lines need to be authenticated by a reference standard method. This study was conducted to investigate the authenticity of a newly established epithelial cell line of human esophageal squamous cell carcinoma (ESCC) called YM-1 using short tandem repeat (STR) DNA profiling method. Primary human ESCC epithelial cells were cultured from the fresh tumor tissue of an adult female patient. Growth characteristics and epithelial originality of YM-1 cells were studied. Genomic DNA was isolated from YM-1 cells harvested at passage 22 and ESCC donor tumor sample on two different days to prevent probable DNA contamination. STR profiling was performed using AmpFℓSTR® Identifiler® Plus PCR Amplification Kit. To address whether YM-1 cells undergo genetic alteration as the passage number increases, STR profiling was performed again on harvested cells at passage 51. YM-1 cells grew as a monolayer with a population doubling time of 40.66 h. Epithelial originality of YM-1 cells was confirmed using ICC/IF staining of cytokeratins AE1/AE3. The STR profile of the ESCC donor tumor sample was the same with YM-1 cells at passage 22. However, STR profile of the donor tumor sample showed an off-ladder (OL) allele in their D7S820 locus. Also, re-profiling of YM-1 cells at passage 51 showed a loss of heterozygosity (LOH) at D18S51 locus. This suggests that long-term culture of cell lines may alter their DNA profile. Comparison of the DNA fingerprinting results in DSMZ, and ATCC STR profiling databases confirmed unique identity of YM-1 cell line. This study provides an easy, fast, and reliable procedure for authentication of newly established cell lines, which helps in preventing the spread of misidentified cells and improving the reproducibility and validity of experiments, consequently. PMID:26432330

  10. GENERATION OF TWO STABLE CELL LINES THAT EXPRESS HER-ALPHA OR HER-ALPHA AND -BETA AND FIREFLY LUCIFERASE GENES FOR ENDOCRINE SCREENING

    EPA Science Inventory

    Generation of Two Stable Cell Lines that Express hERa or
    hERa and b and Firefly Luciferase Genes for Endocrine Screening

    K.L. Bobseine*1, W.R. Kelce2, P.C. Hartig*1, and L.E. Gray, Jr.1

    1USEPA, NHEERL, Reproductive Toxicology Division, RTP, NC, 2Searle, Reprod...

  11. [Alpha1-adrenoceptor subtypes and alpha1-adrenoceptor antagonists].

    PubMed

    Muramatsu, Ikunobu; Suzuki, Fumiko; Tanaka, Takashi; Yamamoto, Hatsumi; Morishima, Shigeru

    2006-03-01

    Alpha(1)-adrenoceptors are widely distributed in the human body and play important physiologic roles. Three alpha(1)-adrenoceptor subtypes (alpha(1A), alpha(1B) and alpha(1D)) have been cloned and show different pharmacologic profiles. In addition, a putative alpha(1)-adrenoceptor (alpha(1L) subtype) has also been proposed. Recently, three drugs (tamsulosin, naftopidil, and silodosin) have been developed in Japan for the treatment of urinary obstruction in patients with benign prostatic hyperplasia. In this review, we describe recent alpha(1)-adrenoceptor subclassifications and the pharmacologic characteristics (subtype selectivity and clinical relevance) of alpha(1)-adrenoceptor antagonists. PMID:16518082

  12. A comparison of lyman alpha and HeI lambda 10830 line structure and variations in early-type star atmospheres

    NASA Technical Reports Server (NTRS)

    Meisel, D. D.

    1977-01-01

    Fabry-Perot interferometric profiles for fifty of the early-type stars including supergiants, eclipsing binaries, Bp and Ap stars, Be and shell stars, and variable stars have been obtained. Results for beta Persei (Algol) just before primary and secondary eclipses show strong emission profiles lasting about 0.1 phase. An absorption line was seen during secondary eclipse. Bright supergiant stars (O9-A2) show time-variable, complicated absorption/emission profiles similar to those obtained for the Be/shell stars.

  13. Intermolecular protein interactions in solutions of calf lens alpha-crystallin. Results from 1/T1 nuclear magnetic relaxation dispersion profiles.

    PubMed Central

    Koenig, S H; Brown, R D; Spiller, M; Chakrabarti, B; Pande, A

    1992-01-01

    From analyses of the magnetic field dependence of 1/T1 (NMRD profiles) of water protons in solutions of calf lens alpha-crystallin at several concentrations, we find two regimes of solute behavior in both cortical and nuclear preparations. Below approximately 15% vol/vol protein concentration, the solute molecules appear as compact globular proteins of approximately 1,350 (cortical) and approximately 1,700 (nuclear) kD. At higher concentrations, the effective solute particle size increases, reversibly, as evidenced by the appearance of spectra-like 14N peaks in the NMRD profiles and a change in the field and temperature dependence of 1/T1. At these higher concentrations, the profiles are very similar to those of calf gamma II-crystallin, a crystallin that undergoes an analogous transition near approximately 15% protein (Koenig, S. H., C.F. Beaulieu, R. D. Brown III, and M. Spiller, 1990. Biophys. J. 57:461-469). By comparison with recent analyses of NMRD results for solutions of immobilized proteins as models for the transition from protein solutions to tissue (Koenig, S. H., and R. D. Brown III. 1991. Prog. NMR Spectr. 22:487-567), we argue that alpha-crystallin solute behaves as aggregates approximately greater than 50,000 kD as protein concentration is progressively increased above 15%. Finally, the concentration dependence of the NMRD profiles of alpha- and gamma II-crystallin can readily explain recent osmotic pressure data, in particular the intersection of the respective pressure curves at approximately 23% vol/vol (Vérétout, F., and A. Tardieu. 1989. Eur. Biophys. J. 17:61-68). Images FIGURE 1 FIGURE 2 FIGURE 3 FIGURE 4 FIGURE 7 PMID:1504248

  14. ON THE DOPPLER SHIFT AND ASYMMETRY OF STOKES PROFILES OF PHOTOSPHERIC Fe I AND CHROMOSPHERIC Mg I LINES

    SciTech Connect

    Na Deng; Choudhary, Debi Prasad; Balasubramaniam, K. S. E-mail: debiprasad.choudhary@csun.ed

    2010-08-10

    We analyzed the full Stokes spectra using simultaneous measurements of the photospheric (Fe I 630.15 and 630.25 nm) and chromospheric (Mg I b {sub 2} 517.27 nm) lines. The data were obtained with the High Altitude Observatory/National Solar Observatory (HAO/NSO) advanced Stokes polarimeter, about a near disk center sunspot region, NOAA AR 9661. We compare the characteristics of the Stokes profiles in terms of Doppler shifts and asymmetries among the three spectral lines, helping us to better understand the chromospheric lines and the magnetic and flow fields in different magnetic regions. The main results are: (1) for the penumbral area observed by the photospheric Fe I lines, Doppler velocities derived from Stokes I ({nu} {sub i}) are very close to those derived from linear polarization profiles ({nu}{sub lp}) but significantly different from those derived from Stokes V profiles ({nu}{sub zc}), thus providing direct and strong evidence that the penumbral Evershed flows are magnetized and mainly carried by the horizontal magnetic component; (2) the rudimentary inverse Evershed effect observed by the Mg I b {sub 2} line provides qualitative evidence on its formation height that is around or just above the temperature minimum region; (3) {nu}{sub zc} and {nu}{sub lp} in the penumbrae and {nu}{sub zc} in the pores generally approach their {nu} {sub i} observed by the chromospheric Mg I line, which is not the case for the photospheric Fe I lines; (4) the outer penumbrae and pores show similar Stokes V asymmetry behavior that tend to change from positive values in the photosphere (Fe I lines) to negative values in the low chromosphere (Mg I line); (5) the Stokes V profiles in plage regions are highly asymmetric in the photosphere and more symmetric in the low chromosphere; and (6) strong redshifts and large asymmetries are found around the magnetic polarity inversion line within the common penumbra of the {delta} spot. We offer explanations or speculations to the

  15. Wind-wind collision in the η Carinae binary system - III. The HeII λ4686 line profile

    NASA Astrophysics Data System (ADS)

    Abraham, Z.; Falceta-Gonçalves, D.

    2007-06-01

    We modelled the HeII λ4686 line profiles observed in the η Carinae binary system close to the 2003.5 spectroscopic event, assuming that they were formed in the shocked gas that flows at both sides of the contact surface formed by wind-wind collision. We used a constant flow velocity and added turbulence in the form of a Gaussian velocity distribution. We allowed emission from both the primary and secondary shocks but introduced infinite opacity at the contact surface, implying that only the side of the contact cone visible to the observer contributed to the line profile. Using the orbital parameters of the binary system derived from the 7-mm light curve during the last spectroscopic event (Paper II) we were able to reproduce the line profiles obtained with the Hubble Space Telescope at different epochs, as well as the line mean velocities obtained with ground-based telescopes. A very important feature of our model is that the line profile depends on the inclination of the orbital plane; we found that to explain the latitude-dependent mean velocity of the line, scattered into the line of sight by the Homunculus, the orbit cannot lie in the Homunculus equatorial plane, as usually assumed. This result, together with the relative position of the stars during the spectroscopic events, allowed us to explain most of the observational features, like the variation of the `Purple Haze' with the orbital phase, and to conciliate the X-ray absorption with the postulated shell effect used to explain the optical and ultraviolet light curves.

  16. Genetic profiling reveals an alarming rate of cross-contamination among human cell lines used in China.

    PubMed

    Ye, Fang; Chen, Chuguang; Qin, Jian; Liu, Jie; Zheng, Congyi

    2015-10-01

    Cell lines are widely used as in vitro model systems in biologic and medical research. However, much of the research has been invalidated by the unwitting use of false cell lines. A significant proportion of the research involving human cell lines was initiated in China. Paradoxically, the cell lines used in China have never been authenticated. Here, we present a comprehensive survey of cross-contamination in 380 samples from 113 independent sources in China using short tandem repeat profiling methods. High levels of cross-contamination were uncovered (95 of 380, 25%). Notable false cell lines (e.g., KB and WISH) are still actively used under their false identity and tissue attributions. Most strikingly, 85.51% of lines established in China were misidentified (59 of 69) and accounted for over half of the misidentifications (59 of 95, 62.11%). Further, 93.22% of the contaminants in cell lines established in laboratories of China were HeLa cells or a possible hybrid of HeLa with an unknown cell line. Results from these misidentified lines have been published in thousands of potentially erroneous articles and may have distorted the findings visible to the scientific community. False lines have been used in drug screening, potentially leading to unusable or even harmful therapeutic strategies. We also noted the causes of contamination and provided suggestions for remediation. PMID:26116706

  17. The pore-lining region of shaker voltage-gated potassium channels: comparison of beta-barrel and alpha-helix bundle models.

    PubMed Central

    Kerr, I D; Sansom, M S

    1997-01-01

    Although there is a large body of site-directed mutagenesis data that identify the pore-lining sequence of the voltage-gated potassium channel, the structure of this region remains unknown. We have interpreted the available biochemical data as a set of topological and orientational restraints and employed these restraints to produce molecular models of the potassium channel pore region, H5. The H5 sequence has been modeled either as a tetramer of membrane-spanning beta-hairpins, thus producing an eight-stranded beta-barrel, or as a tetramer of incompletely membrane-spanning alpha-helical hairpins, thus producing an eight-staved alpha-helix bundle. In total, restraints-directed modeling has produced 40 different configurations of the beta-barrel model, each configuration comprising an ensemble of 20 structures, and 24 different configurations of the alpha-helix bundle model, each comprising an ensemble of 24 structures. Thus, over 1300 model structures for H5 have been generated. Configurations have been ranked on the basis of their predicted pore properties and on the extent of their agreement with the biochemical data. This ranking is employed to identify particular configurations of H5 that may be explored further as models of the pore-lining region of the voltage-gated potassium channel pore. Images FIGURE 7 FIGURE 12 PMID:9251779

  18. Molecular rotational line profiles from oxygen-rich red giant winds

    NASA Technical Reports Server (NTRS)

    Justtanont, K.; Skinner, C. J.; Tielens, A. G. G. M.

    1994-01-01

    We have developed a radiative transfer model of the dust and gas envelopes around late-type stars. The gas kinetic temperature for each star is calculated by solving equations of motion and the energy balance simultaneously. The main processes include viscous heating and adiabatic and radiative cooling. Heating is dominated by viscosity as the grains stream outward through the gas, with some contribution in oxygen-rich stars by near-IR pumping of H2O followed by collisional de-excitation in the inner envelope. For O-rich stars, rotational H2O cooling is a dominant mechanism in the middle part of the envelope, with CO cooling being less significant. We have applied our model to three well-studied oxygen-rich red giant stars. The three stars cover a wide range of mass-loss rates, and hence they have different temperature structures. The derived temperature structures are used in calculating CO line profiles for these objects. Comparison of the dust and gas mass-loss rates suggests that mass-loss rates are not constant during the asymptotic giant branch phase. In particular, the results show that the low CO 1-0 antenna temperatures of OH/IR stars reflect an earlier phase of much lower mass-loss rate.

  19. Expression Profile of MiR-128 in the Astrocytoma Patients and Cell Lines.

    PubMed

    Xu, Jingjing; Liu, Yuqiong; Guo, Si; Ma, Shengli; Xiao, Lin; Wei, Na; Xue, Rui

    2016-09-01

    Malignant astrocytomas are the most common primary brain tumors. The critical characterizes of astrocyomas are their aggressive and infiltrative in the brain, which leads to uncontrollable by conventional forms of therapy. MicroRNAs are small RNAs that had been found to regulate their targets by specific binding to the 3'-untranslated region (3'UTR) of mRNA. Recent advances in understanding the molecular biology of these tumors have revealed that microRNA (miRNA) disruption may play important roles in the pathogenesis of astrocytomas. And some of the miRNA alterations were found in the serum of astrocytoma patients. In this study, we studied the expression profile of miR-128, in the different stages of astrocytoma tissues and two human astrocytoma cell lines, A172 and T98G cells. We found that the levels of miR-128 are decreased in the A172 and T98G cells when compared to normal human astrocyte (NHA). Furthermore, the levels of miR-128 decreased gradually to the pathological stages of astrocytomas. We also identified that TROVE2 is a novel target of miR-128 by the luciferase reporter system. Furthermore, the expression levels of TROVE2 are dramatically increased with the pathological stages increasing. Finally, the levels of TROVE2 are negatively correlated with miR-128 in astrocytoma tissues. Our data provided novel evidence for the miR-128 and TROVE2 in the development of human astrocytomas. PMID:26307612

  20. Hep88 mAb-initiated paraptosis-like PCD pathway in hepatocellular carcinoma cell line through the binding of mortalin (HSPA9) and alpha-enolase

    PubMed Central

    2014-01-01

    Background Hepatocellular carcinoma (HCC) is the most prevalent hepatic cancer worldwide. Currently, a targeted therapy via monoclonal antibodies (mAbs) specific to tumor-associated antigen is undergoing continual development in HCC treatment. Methods In this regard, after establishing and consequently exploring Hep88 mAb’s tumoricidal effect on hepatocellular carcinoma cell line (HepG2 cell line), the Hep88 mAb’s specific antigens from both membrane and cytoplasmic fractions of HepG2 cell line were identified by 2-D gel electrophoresis and western blot analysis. After in-gel digestion and subsequent analysis by liquid chromatography-mass spectrometry (LC-MS), mortalin (HSPA9) and alpha-enolase were identified. The recombinant proteins specific to Hep88 mAb were cloned and expressed in E. coli BL21(DE3). Moreover, alteration of HepG2 and Chang liver cell line after being induced by Hep88 mAb for 1–3 days was investigated using a transmission electron microscope. Results The result demonstrated that Hep88 mAb can bind to the recombinant mortalin (HSPA9) and alpha-enolase. In addition, the gradual appearing of mitochondria vacuolization and endoplasmic reticulum dilatation were observed. Those characteristics might be explained by the paraptosis-like program cell death (PCD), which is induced by the binding of Hep88 mAb to mortalin (HSPA9). Mortalin depletion resulting from the formation of Hep88 mAb-mortalin (HSPA9) complex might initiate transcription-independence of p53-mediated apoptosis. Additionally, Hep88mAb-alpha-enolase complex might initiate HepG2 cells energy exhaustion by glycolysis pathway obstruction. Conclusion These fascinating results imply that Hep88 mAb might be a promising tool for the development of an effective treatment of HCC in the next decade. PMID:25788858

  1. Skylab observations of H I Lyman-alpha

    NASA Technical Reports Server (NTRS)

    Roussel-Dupre, D.

    1982-01-01

    The H I Lyman-alpha profiles obtained with the Skylab SO82-B spectrograph at spectral and spatial resolutions of 60 mA and 2 arcsec x 60 arcsec are presented. Profile variations are illustrated from center to limb, at different heights above the limb, and over a cell and network boundary. The Lyman-alpha core exhibits weak or no limb darkening, whereas the line wings show weak limb darkening. Above the limb, the Lyman-alpha core integrated intensity and line width remain in essence constant up to plus 12 arcsec and may result from resonance scattering of chromospheric radiation by coronal neutral hydrogen or from spicules. On the disk, intensities in the line core are seen as correlating well with the H-alpha network; however, the Lyman-alpha wing intensities are found to correlate better with the transition region lines. The average of profiles acquired over the cell and network region is found to be similar to profiles obtained in the cell.

  2. Evaluation of hydrogen atom density in the plasma core region based on the Balmer-α line profile

    NASA Astrophysics Data System (ADS)

    Goto, M.; Sawada, K.; Fujii, K.; Hasuo, M.; Morita, S.

    2011-02-01

    The Balmer-α line profile is measured with high wavelength resolution for a discharge in the Large Helical Device. The line profile is regarded as a superposition of continuously varying Doppler broadened components and is expressed as the Laplace transform. Numerical Laplace inversion of the measured line profile gives the distribution function of line emissivity in terms of atom temperature. The temperature dependence of the line emissivity is interpreted as spatial dependence so that the ionization rate and atom density of neutral hydrogen are determined. The temperature range of the detected atoms extends beyond 2 keV which corresponds to a penetration depth of about 1 m in the plasma, or the location at ρ ~ 0.3, where ρ is the normalized minor radius. The atom density of approximately 1013 m-3 is derived in the plasma core region which is more than four orders smaller than that at the plasma boundary. Calculation of neutral transport with a Monte-Carlo simulation code gives satisfactory consistency with the experimental results.

  3. Drug-Resistant Urothelial Cancer Cell Lines Display Diverse Sensitivity Profiles to Potential Second-Line Therapeutics.

    PubMed

    Vallo, Stefan; Michaelis, Martin; Rothweiler, Florian; Bartsch, Georg; Gust, Kilian M; Limbart, Dominik M; Rödel, Franz; Wezel, Felix; Haferkamp, Axel; Cinatl, Jindrich

    2015-06-01

    Combination chemotherapy with gemcitabine and cisplatin in patients with metastatic urothelial cancer of the bladder frequently results in the development of acquired drug resistance. Availability of cell culture models with acquired resistance could help to identify candidate treatments for an efficient second-line therapy. Six cisplatin- and six gemcitabine-resistant cell lines were established. Cell viability assays were performed to evaluate the sensitivity to 16 different chemotherapeutic substances. The activity of the drug transporter ATP-binding cassette transporter, subfamily B, member 1 (ABCB1, a critical mediator of multidrug resistance in cancer) was evaluated using fluorescent ABCB1 substrates. For functional assessment, cells overexpressing ABCB1 were generated by transduction with a lentiviral vector encoding for ABCB1, while zosuquidar was used for selective inhibition. In this study, 8 of 12 gemcitabine- or cisplatin-resistant cell lines were cross-resistant to carboplatin, 5 to pemetrexed, 4 to methotrexate, 3 to oxaliplatin, 5-fluorouracil, and paclitaxel, and 2 to cabazitaxel, larotaxel, docetaxel, topotecan, doxorubicin, and mitomycin c, and 1 of 12 cell lines was cross-resistant to vinflunine and vinblastine. In one cell line with acquired resistance to gemcitabine (TCC-SUP(r)GEMCI(20)), cross-resistance seemed to be mediated by ABCB1 expression. Our model identified the vinca alkaloids vinblastine and vinflunine, in Europe an already approved second-line therapeutic for metastatic bladder cancer, as the most effective compounds in urothelial cancer cells with acquired resistance to gemcitabine or cisplatin. These results demonstrate that this in vitro model can reproduce clinically relevant results and may be suitable to identify novel substances for the treatment of metastatic bladder cancer. PMID:26055179

  4. Toll-like receptor 3 regulates angiogenesis and apoptosis in prostate cancer cell lines through hypoxia-inducible factor 1 alpha.

    PubMed

    Paone, Alessio; Galli, Roberta; Gabellini, Chiara; Lukashev, Dmitriy; Starace, Donatella; Gorlach, Agnes; De Cesaris, Paola; Ziparo, Elio; Del Bufalo, Donatella; Sitkovsky, Michail V; Filippini, Antonio; Riccioli, Anna

    2010-07-01

    Toll-like receptors (TLRs) recognize microbial/viral-derived components that trigger innate immune response and conflicting data implicate TLR agonists in cancer, either as protumor or antitumor agents. We previously demonstrated that TLR3 activation mediated by its agonist poly(I:C) induces antitumor signaling, leading to apoptosis of prostate cancer cells LNCaP and PC3 with much more efficiency in the former than in the second more aggressive line. The transcription factor hypoxia-inducible factor 1 (HIF-1) regulates several cellular processes, including apoptosis, in response to hypoxia and to other stimuli also in normoxic conditions. Here we describe a novel protumor machinery triggered by TLR3 activation in PC3 cells consisting of increased expression of the specific I.3 isoform of HIF-1 alpha and nuclear accumulation of HIF-1 complex in normoxia, resulting in reduced apoptosis and in secretion of functional vascular endothelial growth factor (VEGF). Moreover, we report that, in the less aggressive LNCaP cells, TLR3 activation fails to induce nuclear accumulation of HIF-1 alpha. However, the transfection of I.3 isoform of hif-1 alpha in LNCaP cells allows poly(I:C)-induced HIF-1 activation, resulting in apoptosis protection and VEGF secretion. Altogether, our findings demonstrate that differences in the basal level of HIF-1 alpha expression in different prostate cancer cell lines underlie their differential response to TLR3 activation, suggesting a correlation between different stages of malignancy, hypoxic gene expression, and beneficial responsiveness to TLR agonists. PMID:20651983

  5. Evidence for a temperature rise in the outer layers of alpha Lyrae, from Copernicus observations of Lyman-alpha

    NASA Technical Reports Server (NTRS)

    Praderie, F.; Simonneau, E.; Snow, T. P., Jr.

    1975-01-01

    Copernicus satellite observations of the Ly-alpha profiles in alpha Lyrae (Vega) are used to determine whether classical radiative-equilibrium LTE model atmospheres can fit the thermal structure in the outer layers of that star. Two plane-parallel LTE model photospheres of alpha Lyrae are considered: a line-blanketed radiative-equilibrium model with an effective temperature of 9650 K and log g of 4.05, and the same model with a temperature of 9500 K and log g of 4.0. The profiles of the Ly-alpha wings are computed, and it is found that classical LTE models are unable to predict either the observed violet wing or the red wing longwards of 1239 A, regardless of the line source function. It is concluded that the electron temperature must increase outwards over the surface value reached in radiative equilibrium.

  6. Profiling drug-induced cell death pathways in the zebrafish lateral line

    PubMed Central

    Coffin, Allison B.; Williamson, Kay L.; Mamiya, Anna; Raible, David W.; Rubel, Edwin W

    2013-01-01

    Programmed cell death (PCD) is an important process in development and disease, as it allows the body to rid itself of unwanted or damaged cells. However, PCD pathways can also be activated in otherwise healthy cells. One such case occurs in sensory hair cells of the inner ear following exposure to ototoxic drugs, resulting in hearing loss and/or balance disorders. The intracellular pathways that determine if hair cells die or survive following this or other ototoxic challenges are incompletely understood. We use the larval zebrafish lateral line, an external hair cell-bearing sensory system, as a platform for profiling cell death pathways activated in response to ototoxic stimuli. In this report the importance of each pathway was assessed by screening a custom cell death inhibitor library for instances when pathway inhibition protected hair cells from the aminoglycosides neomycin or gentamicin, or the chemotherapy agent cisplatin. This screen revealed that each ototoxin likely activated a distinct subset of possible cell death pathways. For example, the proteasome inhibitor Z-LLF-CHO protected hair cells from either aminoglycoside or from cisplatin, while D-methionine, an antioxidant, protected hair cells from gentamicin or cisplatin but not from neomycin toxicity. The calpain inhibitor leupeptin primarily protected hair cells from neomycin, as did a Bax channel blocker. Neither caspase inhibition nor protein synthesis inhibition altered the progression of hair cell death. Taken together, these results suggest that ototoxin-treated hair cells die via multiple processes that form an interactive network of cell death signaling cascades. PMID:23413197

  7. Metabolomic profiling and genomic analysis of wheat aneuploid lines to identify genes controlling biochemical pathways in mature grain.

    PubMed

    Francki, Michael G; Hayton, Sarah; Gummer, Joel P A; Rawlinson, Catherine; Trengove, Robert D

    2016-02-01

    Metabolomics is becoming an increasingly important tool in plant genomics to decipher the function of genes controlling biochemical pathways responsible for trait variation. Although theoretical models can integrate genes and metabolites for trait variation, biological networks require validation using appropriate experimental genetic systems. In this study, we applied an untargeted metabolite analysis to mature grain of wheat homoeologous group 3 ditelosomic lines, selected compounds that showed significant variation between wheat lines Chinese Spring and at least one ditelosomic line, tracked the genes encoding enzymes of their biochemical pathway using the wheat genome survey sequence and determined the genetic components underlying metabolite variation. A total of 412 analytes were resolved in the wheat grain metabolome, and principal component analysis indicated significant differences in metabolite profiles between Chinese Spring and each ditelosomic lines. The grain metabolome identified 55 compounds positively matched against a mass spectral library where the majority showed significant differences between Chinese Spring and at least one ditelosomic line. Trehalose and branched-chain amino acids were selected for detailed investigation, and it was expected that if genes encoding enzymes directly related to their biochemical pathways were located on homoeologous group 3 chromosomes, then corresponding ditelosomic lines would have a significant reduction in metabolites compared with Chinese Spring. Although a proportion showed a reduction, some lines showed significant increases in metabolites, indicating that genes directly and indirectly involved in biosynthetic pathways likely regulate the metabolome. Therefore, this study demonstrated that wheat aneuploid lines are suitable experimental genetic system to validate metabolomics-genomics networks. PMID:26032167

  8. The Broad Iron K-alpha line of Cygnus X-1 as Seen by XMM-Newton in the EPIC-pn Modified Timing Mode

    NASA Technical Reports Server (NTRS)

    Duro, Refiz; Dauser, Thomas; Wilms, Jorn; Pottschmidt, Katja; Nowak, Michael A.; Fritz, Sonja; Kendziorra, Eckhard; Kirsch, Marcus G. F.; Reynolds, Christopher S.; Staubert, Rudiger

    2011-01-01

    We present the analysis of the broadened, flourescent iron K(alpha) line in simultaneous XMM-Newton and RXTE data from the black hole Cygnus X-I. The XMM-Newton data were taken in a modified version of the Timing Mode of the EPIC-pn camera. In this mode the lower energy threshold of the instrument is increased to 2.8 keV to avoid telemetry drop outs due to the brightness of the source, while at the same time preserving the signal to noise ratio in the Fe K(alpha) band. We find that the best-fit spectrum consists of the sum of an exponentially cut-off power-law and relativistically smeared, ionized reflection. The shape of the broadened Fe K(alpha) feature is due to strong Compton broadening combined with relativistic broadening. Assuming a standard, thin accretion disk, the black hole is close to maximally rotating. Key words. X-rays: binaries - black hole physics - gravitation

  9. Effect of alpha Ni3S2 on arachidonic acid metabolites in cultured human lung cells (L132 cell line).

    PubMed

    Shirali, P; Teissier, E; Marez, T; Hildebrand, H F; Haguenoer, J M

    1994-04-01

    Our previous investigations have shown evidence of an interaction between alpha Ni3S2 and membranous and cellular lipids of lung cells with a significant increase in the linoleic, linolenic and arachidonic acid pool. The present work is designed to follow the metabolic fate of arachidonic acid in alpha Ni3S2-exposed human embryonic pulmonary epithelial cells (L132) in culture (50 microM alpha Ni3S2 for 3 days). The metabolites of arachidonic acid were assessed by HPLC determination coupled with UV or electrochemical detection. We determined malondialdehyde (MDA), hydroxyeicosatetraenoic acid (HETE), leukotrienes (LT) and reduced glutathione (GSH). In exposed cells we observed a significant increase of MDA, which is a breakdown product of lipid peroxidation. In addition, we noted significant increases of 5-HETE and 15-HETE in L132 cells resulting from the enzymatic reduction of 5-HPETE and 15-HPETE respectively. There was also a simultaneous decrease of GSH--confirmed by a strong decrease of GSH in exposed cells with respect to controls. 5-HPETE is furthermore converted to epoxides such as leukotriene A4 and we also quantified in exposed cells a significant increase of its subsequent catabolites LTB4, LTC4 and LTE4. These investigations show clearly that exposure of L132 cells to alpha Ni3S2 enhances lipid peroxidation based upon direct measurements of MDA and other metabolites of arachidonic acid. This lipid peroxidation is an autocatalytic free-radical process and could be responsible for DNA damage. PMID:8149492

  10. Spectral Line Polarisation Atlases for 53 Cam (A4p) and alpha 2 CVn (A0p)

    NASA Astrophysics Data System (ADS)

    Wade, G. A.

    2002-08-01

    Wade, Donati & Landstreet (2000) presented a atlas of the R=35,000 Stokes IQUV spectrum of the cool magnetic Ap star beta CrB in the spectral range 450-660 nm. In this report we present analogous atlases for the well-studied magnetic Ap stars 53 Cam (HD 65339, A4p) and alpha 2 CVn (HD 112413, A0p).

  11. A computer program for a line-by-line calculation of spectra from diatomic molecules and atoms assuming a Voight line profile

    NASA Technical Reports Server (NTRS)

    Arnold, J. O.; Lyle, G. C.; Whiting, E. E.

    1969-01-01

    Computer program predicts the spectra resulting from electronic transitions of diatomic molecules and atoms in local thermodynamic equilibrium. The program produces a spectrum by accounting for the contribution of each rotational and atomic line considered.

  12. Broadening of the Spectral Atomic Lines Analysis in High Density Argon Corona Plasma by Using Voigt Profile

    NASA Astrophysics Data System (ADS)

    Nur, M.; Bonifaci, N.; Denat, A.; Atrazhev, V. M.

    2015-06-01

    Studies of spectrum emission from high density argon plasma corona has been done. The analysis of the boardening of spectral atomic lines of Ar-I profile has been curried out by using an empirical approximation based on a Voigt profile. Full-width at half-maximum (FWHM) of the spectral-lines of 763.5 nm has been determined from atmospheric pressure until liquid state. The study liquid argon was curried out in a variation of temperature from K to 151.2 K and hydrostatics pressure from 2.1 MPa to 6.4 MPa. These pressure gives the densities N∞ (i.e. density very far from ionization zone) a variation from 1.08 1022 to 2.11 1022 cm-3. FWHM of Voigt approximation (Wv) of the line 763,5 nm of 'Ar I for: the emission lamp very low pressure (Wv = 0,160 nm) and our corona discharge at a pressure of MPa (Wv = 0,67 nm) and at a pressure of 9,5 MPa (Wv = 1,16 nm). In gas, corona plasma has been generated from 0.1 MPa to 9.5 MPa. We found that the broadening spectral line increase by increasing densities both for. the spectral-lines of 763.5 nm and 696.5 nm. We concluded that broadening of spectrum cause of Van der Waals force.

  13. Asymmetry of the Balmer-alpha line shape and recovery of the effective hydrogen temperature in the tokamak scrape-off layer

    SciTech Connect

    Neverov, V. S. Kukushkin, A. B.; Lisgo, S. W. Kukushkin, A. S.; Alekseev, A. G.

    2015-02-15

    An algorithm for recovering the effective temperature of atoms of hydrogen (and its isotopes) in the tokamak scrape-off layer from the asymmetry of the Balmer-alpha line shape is proposed. The algorithm is based on the parametrization of the asymmetry of the line shape caused by the nonlocal character of neutral hydrogen flux from the wall into the tokamak plasma. The accuracy of the algorithm is tested against the results of simulations of the velocity distribution function of deuterium neutrals in the scrape-off layer by the EIRENE code with the use of the source data on the main plasma component in the quasi-stationary stage of the inductive mode of ITER operation calculated by the SOLPS4.3 (B2-EIRENE) code.

  14. Can emission line profiles from perturbed accretion disks mimic those from the broad line region of a black hole in a supermassive binary?

    NASA Astrophysics Data System (ADS)

    Brown, Stephanie Meghan; Eracleous, Michael; Runnoe, Jessie C.; Bogdanovic, Tamara; Sigurdsson, Steinn; Boroson, Todd A.; Halpern, Jules P.

    2016-01-01

    Both observations and simulations from the last decade suggest a link between the evolution of galaxies and their central supermassive black holes. An important ingredient in these evolutionary models is galactic interaction and mergers. Consequently, we expect to see dual active galactic nuclei at the early stages of an interaction and close, bound binary black holes after the parent galaxies have merged. While binary active galactic nuclei have been detected at large separations, it has proven difficult to detect close, bound binaries. Our team has been carrying out an observing campaign to find binary black holes with sub-parsec separations. Thus, we have been studying a sample of 88 quasars from the Sloan Digital Sky Survey whose broad Hβ lines are offset from their nominal wavelength by a few thousand km/s. These offsets suggest orbital motion of one of the black holes and the gas that is bound to it. In this work, we play devil's advocate by exploring an alternative interpretation of the broad emission lines. We ask whether lines formed in a perturbed, non-axisymmetric disks can have profiles similar to those observed. Two categories of non-axisymmetric disks are explored - one with a prominent spiral arm and one that is elliptical. To make the model as general as possible, the radial emissivity of the disk was allowed to have a broken power-law profile. For certain combinations of model parameters, these models can match the observed profile shapes. A subset of these model parameters can mimic the sinusoidal procession of the peak velocity we would expect to see in a binary system on an observable time scale. However, the predominate, observed statistical trend between the Pearson Skewness and the peak position is not reproduced; instead, other trends are predicted by the models that we do not observe.

  15. NGC 5548: LACK OF A BROAD Fe K{alpha} LINE AND CONSTRAINTS ON THE LOCATION OF THE HARD X-RAY SOURCE

    SciTech Connect

    Brenneman, L. W.; Elvis, M.; Krongold, Y.; Liu, Y.; Mathur, S.

    2012-01-01

    We present an analysis of the co-added and individual 0.7-40 keV spectra from seven Suzaku observations of the Sy 1.5 galaxy NGC 5548 taken over a period of eight weeks. We conclude that the source has a moderately ionized, three-zone warm absorber, a power-law continuum, and exhibits contributions from cold, distant reflection. Relativistic reflection signatures are not significantly detected in the co-added data, and we place an upper limit on the equivalent width of a relativistically broad Fe K{alpha} line at EW {<=} 26 eV at 90% confidence. Thus NGC 5548 can be labeled as a 'weak' type 1 active galactic nucleus (AGN) in terms of its observed inner disk reflection signatures, in contrast to sources with very broad, strong iron lines such as MCG-6-30-15, which are likely much fewer in number. We compare physical properties of NGC 5548 and MCG-6-30-15 that might explain this difference in their reflection properties. Though there is some evidence that NGC 5548 may harbor a truncated inner accretion disk, this evidence is inconclusive, so we also consider light bending of the hard X-ray continuum emission in order to explain the lack of relativistic reflection in our observation. If the absence of a broad Fe K{alpha} line is interpreted in the light-bending context, we conclude that the source of the hard X-ray continuum lies at radii r{sub s} {approx}> 100 r{sub g}. We note, however, that light-bending models must be expanded to include a broader range of physical parameter space in order to adequately explain the spectral and timing properties of average AGNs, rather than just those with strong, broad iron lines.

  16. Line-profile microvariability in OB-star spectra: the Supergiant λ Cep (O6If(n))

    NASA Astrophysics Data System (ADS)

    Kholtygin, A. F.; Sudnik, N. P.; Burlakova, T. E.; Valyavin, G. G.

    2011-12-01

    We observed the bright O6If(n) supergiant λ Cep in 1997 with the 6-m optical telescope of the Special Astrophysical Observatory and in 2007 with the 1.8-m telescope of the Bohyunsan Optical Astronomy Observatory (South Korea). A total of 90 spectra of the star were acquired, with good time resolution (10 minutes), signal-to-noise ratios 150-300, and spectral resolutions of 45 000-60 000. We detected line-profile variations of H, HeI, and HeII lines. It is suggested that the detected variations are due to non-radial photospheric pulsations and the star's rotation (rotational profile modulation).

  17. The Seyfert 2 Galaxy NGC 2110: Hard X-Ray Emission Observed by NuStar and Variability of the Iron K-Alpha Line

    NASA Technical Reports Server (NTRS)

    Marinucci, A.; Matt, G.; Bianchi, S.; Lu, T. N.; Arevalo, P.; Balokovic, M.; Ballantyne, D.; Bauer, F. E.; Boggs, S. E.; Stern, D.; Zhang, William W.

    2014-01-01

    We present NuSTAR observations of the bright Seyfert 2 galaxy NGC 2110 obtained in 2012, when the source was at the highest flux level ever observed, and in 2013, when the source was at a more typical flux level. We include archival observations from other X-ray satellites, namely XMM-Newton, Suzaku, BeppoSAX, Chandra and Swift. Simultaneous NuSTAR and Swift broad band spectra (in the 3-80 keV range) indicate a cutoff energy E(sub c) greater than 210 keV, with no detectable contribution from Compton reflection. NGC 2110 is one of the very few sources where no evidence for distant Compton thick scattering is found and, by using temporal information collected over more than a decade, we investigate variations of the iron K(alpha) line on time scales of years. The Fe K alpha line is likely the sum of two components: one constant (originating from distant Compton-thick material) and the other one variable and linearly correlated with the source flux (possibly arising from Compton-thin material much closer to the black hole).

  18. Proposed rocket experiments to measure the profile and intensity of the solar He1584A resonance line

    NASA Technical Reports Server (NTRS)

    Judge, D. L.

    1978-01-01

    The intensity and profile of the helium resonance line at 584 A from the entire disc of the sun was investigated using a rocket-borne helium-filled spectrometer and a curve of growth technique. The line profile was found to be accurately represented by a Gaussian profile with full width at half maximum of 122 plus or minus 10m A while the integrated intensity was measured to be (2.6 plus or minus 1.3) x 10 to the 9th power/photons sec sq cm at solar levels of F sub 10.7 = 90.8 x 10 to the minus 22th power/sq m H sub z and R sub z = 27. The measured linewidth is in good agreement with previous spectrographic measurement but the integrated intensity is larger than most previous photoelectric measurements. However, the derived line center flux of (2.0 plus or minus 1.0) x 10 to the 10th power/photons sec sq cm A is in good agreement with values inferred from airglow measurements.

  19. Protein profiling and tps23 induction in different maize lines in response to methyl jasmonate treatment and Diabrotica virgifera infestation.

    PubMed

    Capra, Emanuele; Colombi, Cinzia; De Poli, Pamela; Nocito, Fabio Francesco; Cocucci, Maurizio; Vecchietti, Alberto; Marocco, Adriano; Stile, Maria Rosaria; Rossini, Laura

    2015-03-01

    Plant responses to herbivore insects involve direct and indirect defense with the production of signal molecules including jasmonic acid (JA) and its derivatives (e.g. methyl jasmonate, MeJA). In maize (Zea mays), root feeding by Diabrotica virgifera larvae activates an indirect defense mechanism, through enthomopathogenic nematodes that are recruited after Terpene Synthase 23 (tps23) upregulation and (E)-β-caryophyllene root emission. In order to gain insight into the correlation between JA signaling and response to Diabrotica attack, we analyzed tps23 expression and protein profiles in maize roots in response to MeJA treatment and insect infestation. Similar to herbivore feeding, MeJA treatment was found to increase tps23 transcript accumulation, with consistent variations for both treatments in maize lines differing in (E)-β-caryophyllene production. Analysis of root protein profiles showed specific alterations leading to the identification of three proteins that were induced by MeJA treatment. We focused on a peroxidase-like protein (Px-like) showing that the corresponding transcripts accumulated in all tested lines. Results show that exogenous application of MeJA upregulates tps23 expression and specifically alters protein patterns in maize roots. Parallel effects on tps23 transcript accumulation were observed upon hormone exposure and insect infestation in different maize lines. In contrast, Px-like transcript profiling showed differences between treatments. These results support the possible involvement of MeJA in mediating the upregulation of tps23 in response to Diabrotica attack. PMID:25506768

  20. Genome-Wide Uncovering of STAT3-Mediated miRNA Expression Profiles in Colorectal Cancer Cell Lines

    PubMed Central

    Zhang, Jufeng; Luo, Xia; Li, Huiming; Deng, Ling

    2014-01-01

    Colorectal cancer (CRC) is one of the most common malignancies resulting in high mortality worldwide. Signal transducer and activator of transcription 3 (STAT3) is an oncogenic transcription factor which is frequently activated and aberrantly expressed in CRC. MicroRNAs (miRNAs) are a class of small noncoding RNAs which play important roles in many cancers. However, little is known about the global miRNA profiles mediated by STAT3 in CRC cells. In the present study, we applied RNA interference to inhibit STAT3 expression and profiled the miRNA expression levels regulated by STAT3 in CRC cell lines with deep sequencing. We found that 26 and 21 known miRNAs were significantly overexpressed and downexpressed, respectively, in the STAT3-knockdown CRC cell line SW480 (SW480/STAT3-siRNA) compared to SW480 transfected with scrambled siRNAs (SW480/siRNA-control). The miRNA expression profiling was then validated by quantitative real-time PCR for selected known miRNAs. We further predicted the putative target genes for the dysregulated miRNAs and carried out functional annotation including GO enrichment and KEGG pathway analysis for selected miRNA targets. This study directly depicts STAT3-mediated miRNA profiles in CRC cells, which provides a possible way to discover biomarkers for CRC therapy. PMID:25126546

  1. Fast inversion of Zeeman line profiles using central moments. II. Stokes V moments and determination of vector magnetic fields

    NASA Astrophysics Data System (ADS)

    Mein, P.; Uitenbroek, H.; Mein, N.; Bommier, V.; Faurobert, M.

    2016-06-01

    Context. In the case of unresolved solar structures or stray light contamination, inversion techniques using four Stokes parameters of Zeeman profiles cannot disentangle the combined contributions of magnetic and nonmagnetic areas to the observed Stokes I. Aims: In the framework of a two-component model atmosphere with filling factor f, we propose an inversion method restricting input data to Q , U, and V profiles, thus overcoming ambiguities from stray light and spatial mixing. Methods: The V-moments inversion (VMI) method uses shifts SV derived from moments of V-profiles and integrals of Q2, U2, and V2 to determine the strength B and inclination ψ of a magnetic field vector through least-squares polynomial fits and with very few iterations. Moment calculations are optimized to reduce data noise effects. To specify the model atmosphere of the magnetic component, an additional parameter δ, deduced from the shape of V-profiles, is used to interpolate between expansions corresponding to two basic models. Results: We perform inversions of HINODE SOT/SP data for inclination ranges 0 <ψ< 60° and 120 <ψ< 180° for the 630.2 nm Fe i line. A damping coefficient is fitted to take instrumental line broadening into account. We estimate errors from data noise. Magnetic field strengths and inclinations deduced from VMI inversion are compared with results from the inversion codes UNNOFIT and MERLIN. Conclusions: The VMI inversion method is insensitive to the dependence of Stokes I profiles on the thermodynamic structure in nonmagnetic areas. In the range of Bf products larger than 200 G, mean field strengths exceed 1000 G and there is not a very significant departure from the UNNOFIT results because of differences between magnetic and nonmagnetic model atmospheres. Further improvements might include additional parameters deduced from the shape of Stokes V profiles and from large sets of 3D-MHD simulations, especially for unresolved magnetic flux tubes.

  2. H{alpha} ABSORPTION IN TRANSITING EXOPLANET ATMOSPHERES

    SciTech Connect

    Christie, Duncan; Arras, Phil; Li Zhiyun E-mail: pla7y@virginia.edu

    2013-08-01

    Absorption of stellar H{alpha} by the upper atmosphere of the planet HD 189733b has recently been detected by Jensen et al. Motivated by this observation, we have developed a model for atomic hydrogen in the n = 2 state and compared the resulting H{alpha} line profile to the observations. The model atmosphere is in hydrostatic balance, as well as thermal and photoionization equilibrium. Collisional and radiative transitions are included in the determination of the n = 2 state level population. We find that H{alpha} absorption is dominated by an optical depth {tau} {approx} 1 shell, composed of hydrogen in the metastable 2s state that is located below the hydrogen ionization layer. The number density of the 2s state within the shell is found to vary slowly with radius, while that of the 1s state falls rapidly. Thus while the Ly{alpha} absorption, for a certain wavelength, occurs inside a relatively well defined impact parameter, the contribution to H{alpha} absorption is roughly uniform over the entire atomic hydrogen layer. The model can approximately reproduce the observed Ly{alpha} and H{alpha} integrated transit depths for HD 189733b by using an ionization rate enhanced over that expected for the star by an order of magnitude. For HD 209458b, we are unable to explain the asymmetric H{alpha} line profile observed by Jensen et al., as the model produces a symmetric line profile with transit depth comparable to that of HD 189733b. In an appendix, we study the effect of the stellar Ly{alpha} absorption on the net cooling rate.

  3. Gas kinematics of Lyman Alpha Blobs at z=2-3

    NASA Astrophysics Data System (ADS)

    Yang, Yujin

    2015-08-01

    High-redshift Lyman alpha nebulae (Ly-alpha "blobs", LABs) are the site of massive galaxy formation and their early interaction with the intergalactic medium. Research in the past decade has struggled to make progress on the question of what powers these huge Ly-alpha halos and whether the Ly-alpha-emitting gas is outflowing or infalling. First, I will present our optical and NIR spectroscopic observations for the Ly-alpha and the redshifted nebular emission lines such as [OII], [OIII] and Halpha. Using three independent measures --- the velocity offset between the Ly-alpha line and the nonresonant [O III] or Halpha line, the offset of stacked interstellar metal absorption lines, and the spectrally resolved [O III] line profile --- we study the kinematics of gas along the line of sight to galaxies within each blob center. All these kinematic measures show that there are only weak outflows, therefore excluding gas inflows and extreme hyper/superwinds as a source of the extended Ly-alpha emission. I will also present the first detection of molecular gas from a Ly-alpha blob and our on-going effort to characterize the physical conditions of its ISM. The large velocity gradient (LVG) modeling using PdBI observations of CO(3-2), CO(5-4), CO(7-6), CI(2-1) lines suggests that two-phase medium is required to explain the blob's CO SEDs and dust continuum.

  4. Stokes profile analysis and vector magnetic fields. I - Inversion of photospheric lines

    NASA Astrophysics Data System (ADS)

    Skumanich, A.; Lites, B. W.

    1987-11-01

    The authors consider improvements to the Auer, Heasley, and House method for the analytic inversion of Stokes profiles via nonlinear least squares. In the application of this method to actual sunspot observations, the authors have found that its simplifications often yield erroneous solutions or nonconvergent behavior. By including damping wings and magneto-optical birefringence and by decoupling the intensity profile from the three-vector polarization profile in the analysis, the authors develop a more robust inversion method that provides a more reliable and accurate estimate of sunspot vector magnetic fields without significant loss of economy.

  5. Spectral line profiles of nickel and argon in supernova 1987A - Expansion velocity and electron scattering effects

    NASA Technical Reports Server (NTRS)

    Witteborn, F. C.; Bregman, J. D.; Wooden, D. H.; Pinto, P. A.; Rank, D. M.

    1989-01-01

    Spectra of SN 1987A showing the Ni II 6.634-micron and Ar II 6.983-micron fine-structure lines were obtained from the Kuiper Airborne Observatory in April 1988. The signal-to-noise ratio of 100 near the peaks and resolving power of 200 are sufficient to show the average velocity of expansion from the core of about 1400 km/s and to indicate the range of velocities. An asymmetry in the profiles of both lines and a redshift of the line centroids of about 440 km/s above the 280-km/s recessional velocity of the LMC can be explained in terms of scattering of the photons by electrons in the expanding hydrogen envelope of the supernova. A mass of 0.0030 solar masses of Ni II can be deduced from the line strength of the Ni II line and a mass of 0.0009 solar masses of Ar II from the Ar II line strength.

  6. Metabolite Profiling of Soybean Seed Extracts from Near-Isogenic Low and Normal Phytate Lines Using Orthogonal Separation Strategies.

    PubMed

    Jervis, Judith; Kastl, Christin; Hildreth, Sherry B; Biyashev, Ruslan; Grabau, Elizabeth A; Saghai-Maroof, Mohammad A; Helm, Richard F

    2015-11-11

    Untargeted metabolomic profiling using liquid chromatography-mass spectrometry (LC-MS) was applied to lipid-depleted methanolic extracts of soybean seeds utilizing orthogonal chromatographic separations (reversed-phase and hydrophilic interaction) in both positive and negative ionization modes. Four near-isogenic lines (NILs) differing in mutations for two genes encoding highly homologous multidrug resistant proteins (MRPs) were evaluated. The double mutant exhibited a low phytate phenotype, whereas the other three NILs, the two single mutants and the wild type, did not. Principal component analysis (PCA) of the four LC-MS data sets fully separated the low phytate line from the other three. While the levels of neutral oligosaccharides were the same for all lines, there were significant metabolite differences residing in the levels of malonyl isoflavones, soyasaponins, and arginine. Two methanol-soluble polypeptides were also found as differing in abundance levels, one of which was identified as the allergen Gly m 1. PMID:26487475

  7. Alpha-2 Heremans Schmid Glycoprotein (AHSG) Modulates Signaling Pathways in Head and Neck Squamous Cell Carcinoma Cell Line SQ20B

    SciTech Connect

    Thompson, Pamela D.; Sakwe, Amos; Koumangoye, Rainelli; Yarbrough, Wendell G.; Ochieng, Josiah; Marshall, Dana R.

    2014-02-15

    This study was performed to identify the potential role of Alpha-2 Heremans Schmid Glycoprotein (AHSG) in Head and Neck Squamous Cell Carcinoma (HNSCC) tumorigenesis using an HNSCC cell line model. HNSCC cell lines are unique among cancer cell lines, in that they produce endogenous AHSG and do not rely, solely, on AHSG derived from serum. To produce our model, we performed a stable transfection to down-regulate AHSG in the HNSCC cell line SQ20B, resulting in three SQ20B sublines, AH50 with 50% AHSG production, AH20 with 20% AHSG production and EV which is the empty vector control expressing wild-type levels of AHSG. Utilizing these sublines, we examined the effect of AHSG depletion on cellular adhesion, proliferation, migration and invasion in a serum-free environment. We demonstrated that sublines EV and AH50 adhered to plastic and laminin significantly faster than the AH20 cell line, supporting the previously reported role of exogenous AHSG in cell adhesion. As for proliferative potential, EV had the greatest amount of proliferation with AH50 proliferation significantly diminished. AH20 cells did not proliferate at all. Depletion of AHSG also diminished cellular migration and invasion. TGF-β was examined to determine whether levels of the TGF-β binding AHSG influenced the effect of TGF-β on cell signaling and proliferation. Whereas higher levels of AHSG blunted TGF-β influenced SMAD and ERK signaling, it did not clearly affect proliferation, suggesting that AHSG influences on adhesion, proliferation, invasion and migration are primarily due to its role in adhesion and cell spreading. The previously reported role of AHSG in potentiating metastasis via protecting MMP-9 from autolysis was also supported in this cell line based model system of endogenous AHSG production in HNSCC. Together, these data show that endogenously produced AHSG in an HNSCC cell line, promotes in vitro cellular properties identified as having a role in tumorigenesis. Highlights: • Head

  8. The formation of emission lines in quasars and Seyfert nuclei

    NASA Technical Reports Server (NTRS)

    Kwan, J.; Krolik, J. H.

    1981-01-01

    The photoionization and heating throughout a quasar emission-line cloud optically thick at the Lyman edge are calculated. Photoionization and collisional ionization from excited states of hydrogen are included, which maintain a substantial electron fraction after the exhaustion of Lyman continuum photons halts ground-state photoionization. Observed values are explained for Ly-alpha/H-beta, H-alpha/H-beta, P-alpha/H-alpha, He I 5876/H-beta, O I 8446/H-alpha, and Mg II 2798/H-beta. The dependence of line strengths on physical conditions is discussed, and plotting Fe II/4570/H-beta versus Balmer continuum/H-beta is suggested. Other observations are also suggested, and the degree of asymmetry is given between the forward and backward emission of lines from a finite slab to make possible the use of comparative line profile studies to elucidate cloud kinematics.

  9. Expression Profiles of Cloned Channel Catfish (Ictalurus punctatus) Lymphoid Cell Lines and Mixed Lymphocyte Cultures

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Clonal channel catfish lymphoid cell lines and mixed lymphocyte cultures (MLC) have proven extremely useful in examining immune responses at the cellular and molecular levels. To date clonal catfish cell lines and MLC have been biologically and phenotypically characterized using a variety of techniq...

  10. Molecule survival in magnetized protostellar disk winds. II. Predicted H2O line profiles versus Herschel/HIFI observations

    NASA Astrophysics Data System (ADS)

    Yvart, W.; Cabrit, S.; Pineau des Forêts, G.; Ferreira, J.

    2016-01-01

    Context. The origin of molecular protostellar jets and their role in extracting angular momentum from the accreting system are important open questions in star formation research. In the first paper of this series we showed that a dusty magneto-hydrodynamic (MHD) disk wind appeared promising to explain the pattern of H2 temperature and collimation in the youngest jets. Aims: We wish to see whether the high-quality H2O emission profiles of low-mass protostars, observed for the first time by the HIFI spectrograph on board the Herschel satellite, remain consistent with the MHD disk wind hypothesis, and which constraints they would set on the underlying disk properties. Methods: We present synthetic H2O line profiles predictions for a typical MHD disk wind solution with various values of disk accretion rate, stellar mass, extension of the launching area, and view angle. We compare them in terms of line shapes and intensities with the HIFI profiles observed by the WISH key program towards a sample of 29 low-mass Class 0 and Class 1 protostars. Results: A dusty MHD disk wind launched from 0.2-0.6 AU AU to 3-25 AU can reproduce to a remarkable degree the observed shapes and intensities of the broad H2O component observed in low-mass protostars, both in the fundamental 557 GHz line and in more excited lines. Such a model also readily reproduces the observed correlation of 557 GHz line luminosity with envelope density, if the infall rate at 1000 AU is 1-3 times the disk accretion rate in the wind ejection region. It is also compatible with the typical disk size and bolometric luminosity in the observed targets. However, the narrower line profiles in Class 1 sources suggest that MHD disk winds in these sources, if present, would have to be slower and/or less water rich than in Class 0 sources. Conclusions: MHD disk winds appear as a valid (though not unique) option to consider for the origin of the broad H2O component in low-mass protostars. ALMA appears ideally suited to

  11. Circadian rhythms, Wnt/beta-catenin pathway and PPAR alpha/gamma profiles in diseases with primary or secondary cardiac dysfunction

    PubMed Central

    Lecarpentier, Yves; Claes, Victor; Duthoit, Guillaume; Hébert, Jean-Louis

    2014-01-01

    Circadian clock mechanisms are far-from-equilibrium dissipative structures. Peroxisome proliferator-activated receptors (PPAR alpha, beta/delta, and gamma) play a key role in metabolic regulatory processes, particularly in heart muscle. Links between circadian rhythms (CRs) and PPARs have been established. Mammalian CRs involve at least two critical transcription factors, CLOCK and BMAL1 (Gekakis et al., 1998; Hogenesch et al., 1998). PPAR gamma plays a major role in both glucose and lipid metabolisms and presents circadian properties which coordinate the interplay between metabolism and CRs. PPAR gamma is a major component of the vascular clock. Vascular PPAR gamma is a peripheral regulator of cardiovascular rhythms controlling circadian variations in blood pressure and heart rate through BMAL1. We focused our review on diseases with abnormalities of CRs and with primary or secondary cardiac dysfunction. Moreover, these diseases presented changes in the Wnt/beta-catenin pathway and PPARs, according to two opposed profiles. Profile 1 was defined as follows: inactivation of the Wnt/beta-catenin pathway with increased expression of PPAR gamma. Profile 2 was defined as follows: activation of the Wnt/beta-catenin pathway with decreased expression of PPAR gamma. A typical profile 1 disease is arrhythmogenic right ventricular cardiomyopathy, a genetic cardiac disease which presents mutations of the desmosomal proteins and is mainly characterized by fatty acid accumulation in adult cardiomyocytes mainly in the right ventricle. The link between PPAR gamma dysfunction and desmosomal genetic mutations occurs via inactivation of the Wnt/beta-catenin pathway presenting oscillatory properties. A typical profile 2 disease is type 2 diabetes, with activation of the Wnt/beta-catenin pathway and decreased expression of PPAR gamma. CRs abnormalities are present in numerous pathologies such as cardiovascular diseases, sympathetic/parasympathetic dysfunction, hypertension, diabetes

  12. Alpha-particle diagnostics

    SciTech Connect

    Young, K.M.

    1991-01-01

    This paper will focus on the state of development of diagnostics which are expected to provide the information needed for {alpha}- physics studies in the future. Conventional measurement of detailed temporal and spatial profiles of background plasma properties in DT will be essential for such aspects as determining heating effectiveness, shaping of the plasma profiles and effects of MHD, but will not be addressed here. This paper will address (1) the measurement of the neutron source, and hence {alpha}-particle birth profile, (2) measurement of the escaping {alpha}-particles and (3) measurement of the confined {alpha}-particles over their full energy range. There will also be a brief discussion of (4) the concerns about instabilities being generated by {alpha}-particles and the methods necessary for measuring these effects. 51 refs., 10 figs.

  13. Investigations on a robust profile model for the reconstruction of 2D periodic absorber lines in scatterometry

    NASA Astrophysics Data System (ADS)

    Gross, H.; Richter, J.; Rathsfeld, A.; Bär, M.

    2010-09-01

    Scatterometry as a non-imaging indirect optical method in wafer metrology is applicable to lithography masks designed for extreme ultraviolet (EUV) lithography , where light with wavelengths of about 13.5 nm is applied. The main goal is to reconstruct the critical dimensions (CD) of the mask, i.e., profile parameters such as line width, line height, and side-wall angle, from the measured diffracted light pattern and to estimate the associated uncertainties. The numerical simulation of the diffraction process for periodic 2D structures can be realized by the finite element solution of the two-dimensional Helmholtz equation. The inverse problem is expressed as a non-linear operator equation where the operator maps the sought mask parameters to the efficiencies of the diffracted plane wave modes. To solve this operator equation, the deviation of the measured efficiencies from the ones obtained computationally is minimized by a Gauss-Newton type iterative method. In the present paper, the admissibility of rectangular profile models for the evaluations of CD uniformity is studied. More precisely, several sets of typical measurement data are simulated for trapezoidal shaped EUV masks with different mask signatures characterized by various line widths, heights and side-wall angles slightly smaller than 90 degree. Using these sets, but assuming rectangular structures as the basic profiles of the numerical reconstruction algorithm, approximate line height and width parameters are determined as the critical dimensions of the mask. Finally, the model error due to the simplified shapes is analyzed by checking the deviations of the reconstructed parameters from their nominal values.

  14. Cell Line Derived 5-FU and Irinotecan Drug-Sensitivity Profiles Evaluated in Adjuvant Colon Cancer Trial Data

    PubMed Central

    Delorenzi, Mauro; Jensen, Thomas; Jensen, Peter Buhl; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Brunner, Nils; Hansen, Anker; Knudsen, Steen

    2016-01-01

    Purpose This study evaluates whether gene signatures for chemosensitivity for irinotecan and 5-fluorouracil (5-FU) derived from in vitro grown cancer cell lines can predict clinical sensitivity to these drugs. Methods To test if an irinotecan signature and a SN-38 signature could identify patients who benefitted from the addition of irinotecan to 5-FU, we used gene expression profiles based on cell lines and clinical tumor material. These profiles were applied to expression data obtained from pretreatment formalin fixed paraffin embedded (FFPE) tumor tissue from 636 stage III colon cancer patients enrolled in the PETACC-3 prospective randomized clinical trial. A 5-FU profile developed similarly was assessed by comparing the PETACC-3 cohort with a cohort of 359 stage II colon cancer patients who underwent surgery but received no adjuvant therapy. Results There was no statistically significant association between the irinotecan or SN-38 profiles and benefit from irinotecan. The 5-FU sensitivity profile showed a statistically significant association with relapse free survival (RFS) (hazard ratio (HR) = 0.54 (0.41–0.71), p<1e-05) and overall survival (HR = 0.47 (0.34–0.63), p<1e-06) in the PETACC-3 subpopulation. The effect of the 5-FU profile remained significant in a multivariable Cox Proportional Hazards model, adjusting for several relevant clinicopathological parameters. No statistically significant effect of the 5-FU profile was observed in the untreated cohort of 359 patients (relapse free survival, p = 0.671). Conclusion The irinotecan predictor had no predictive value. The 5-FU predictor was prognostic in stage III patients in PETACC-3 but not in stage II patients with no adjuvant therapy. This suggests a potential predictive ability of the 5-FU sensitivity profile to identify colon cancer patients who may benefit from 5-FU, however, any biomarker predicting benefit for adjuvant 5-FU must be rigorously evaluated in independent cohorts. Given differences

  15. GAS KINEMATICS IN Ly{alpha} NEBULAE

    SciTech Connect

    Yang Yujin; Jahnke, Knud; Zabludoff, Ann; Eisenstein, Daniel; Dave, Romeel; Shectman, Stephen A.; Kelson, Daniel D.

    2011-07-10

    Exploring the origin of Ly{alpha} nebulae ('blobs') at high redshift requires measurements of their gas kinematics that are impossible with only the resonant, optically thick Ly{alpha} line. To define gas motions relative to the systemic velocity of the blob, the Ly{alpha} line must be compared with an optically thin line like H{alpha} {lambda}6563, which is not much altered by radiative transfer effects and is more concentrated about the galaxies embedded in the nebula's core. We obtain optical and near-IR (NIR) spectra of the two brightest Ly{alpha} blobs (CDFS-LAB01 and CDFS-LAB02) from the Yang et al. sample using the Magellan/Magellan Echellette Spectrograph optical and Very Large Telescope/SINFONI NIR spectrographs. Both the Ly{alpha} and H{alpha} lines confirm that these blobs lie at the survey redshift, z {approx} 2.3. Within each blob, we detect several H{alpha} sources, which roughly correspond to galaxies seen in Hubble Space Telescope rest-frame UV images. The H{alpha} detections show that these galaxies have large internal velocity dispersions ({sigma}{sub v} = 130-190 km s{sup -1}) and that, in the one system (LAB01), where we can reliably extract profiles for two H{alpha} sources, their velocity difference is {Delta}v {approx} 440 km s{sup -1}. The presence of multiple galaxies within the blobs, and those galaxies' large velocity dispersions and large relative motion, is consistent with our previous finding that Ly{alpha} blobs inhabit massive dark matter halos that will evolve into those typical of present-day rich clusters and that the embedded galaxies may eventually become brightest cluster galaxies. To determine whether the gas near the embedded galaxies is predominantly infalling or outflowing, we compare the Ly{alpha} and H{alpha} line centers, finding that Ly{alpha} is not offset ({Delta}v{sub Ly{alpha}} = +0 km s{sup -1}) in LAB01 and redshifted by only +230 km s{sup -1} in LAB02. These offsets are small compared to those of Lyman break

  16. Theoretical multiconfiguration Dirac-Fock method study on the x-ray spectra of multiply ionized heavy atoms: The structure of the K. cap alpha. L/sup n/ lines

    SciTech Connect

    Polasik, M.

    1989-01-15

    Relativistic multiconfiguration Dirac-Fock (MCDF) calculations in the average-level (MCDF-AL) version with the inclusion of the transverse (Breit) interaction, self-energy, and vacuum polarization corrections have been carried out for molybdenum, palladium, lanthanum, and holmium to elucidate the structure of the K..cap alpha..L/sup n/ lines in their x-ray spectra. The examination of the effect of removing electrons from M shell on the principal K..cap alpha..(K..cap alpha..L/sup 0/) lines indicates that the most significant is the effect of removing 3p and then 3s subshells and that the effect of additional holes strongly increases with the atomic number. Detailed calculations have been performed on palladium to shed light on the structure of the K..cap alpha..L/sup n/ satellite lines of its x-ray spectrum, which is the first systematic theoretical study on the structure of these lines of a heavy atom. It has been found that in all cases the ''average'' positions of the groups of lines corresponding to the transitions of the type 1s/sup -1/2p/sup -n/..-->..2p/sup -(n+1)/ obtained in the present work are very close to the recently measured experimental positions of appropriate K..cap alpha..L/sup n/ satellite lines. On the other hand, the structure of the satellite lines has been shown to be much more complex than can be observed experimentally. The results of this work can be used to construct different theoretical K..cap alpha..L/sup n/ spectra for palladium, satisfactorily reproducing the shape of various experimental spectra generated by different inducing projectiles.

  17. An enhanced and sensitive autocrine stimulation by transforming growth factor-alpha is acquired in the brain metastatic variant of a human non-small-cell lung cancer cell line.

    PubMed

    Fang, K

    1996-12-01

    Transforming growth factor-alpha (TGF-alpha)-mediated autocrine regulation in human non-small-cell lung cancer (NSCLC) cells NCI-H226 and its brain metastatic variant H226Br were compared. An enhanced TGF-alpha-induced dose-dependent mitogenic responsiveness in H226Br cells was observed. Neutralising antibody that binds TGF-alpha inhibits H226Br cell growth more effectively than NCI-H226 cell growth. Binding assay with 125I-labelled epidermal growth factor (EGF) revealed that H226Br has two types of EGF receptors (EGFRs), whereas the parental cell line, NCI-H226, has only one. H226Br cells contain twice as many EGFRs as H226 cells, as proved by Scatchard analysis and immune kinase assay. Northern analysis indicated that there is more EGFR transcript in H226Br than in NCI-H226, indicating a transcriptional EGFR gene elevation during metastasis progression. The level of accumulated immunoactive TGF-alpha is lower in the conditioned medium of H226Br than in that of NCI-H226. demonstrating down-regulation of TGF-alpha transcript. The accumulated data suggest an elevated and sensitive autocrine modulation by TGF-alpha and EGFR in immortalising the brain metastatic variant cells that were derived from a human NSCLC squamous cell line. PMID:8956792

  18. Atmospheric Profiling Combining the Features of GPS ro & Mls: Satellite to Satellite Occultations Near Water & Ozone Absorption Lines

    NASA Astrophysics Data System (ADS)

    Kursinski, E. R.; Ward, D.; Otarola, A. C.; McGhee, J.; Reed, H.; Erickson, D.

    2015-12-01

    Assessing climate models & their predictions requires observations that determine the state of the real climate system precisely and unambiguously, independently from models. For this purpose, we have been developing a new orbiting remote sensing system called the Active Temperature, Ozone & Moisture Microwave Spectrometer (ATOMMS) which is a cross between GPS RO and the Microwave Limb Sounder. ATOMMS actively probes water vapor, ozone & other absorption lines at cm & mm wavelengths in a satellite to satellite occultation geometry to simultaneously profile temperature, pressure, water vapor and ozone as well as other important constituents. Individual profiles of water vapor, temperature & pressure heights will extend from near the surface into the mesosphere with ~1%, 0.4K and 10 m precision respectively and still better accuracy, with 100 m vertical resolution. Ozone profiles will extend upward from the upper troposphere. Line of sight wind profiles will extend upwards from the mid-stratosphere. ATOMMS is a doubly differential absorption system which eliminates drift and both sees clouds and sees thru them, to deliver performance in clouds within a factor of 2 of the performance in clear skies. This all-weather sampling combined with insensitivity to surface emissivity avoids sampling biases that limit most existing satellite records. ATOMMS will profile slant liquid water in clouds & rain and as well as turbulence via scintillations ("twinkling of a star"). Using prototype ATOMMS instrumentation that we developed with funding from NSF, several ATOMMS ground field campaigns precisely measured water vapor, cloud amount, rainfall, turbulence and absorption line spectroscopy. ATOMMS's dynamic range was demonstrated as water vapor was derived to 1% precision in optical depths up to 17. We are developing high altitude aircraft to aircraft instrumentation to further demonstrate ATOMMS performance, refine spectroscopy & support future field campaigns. Our vision is a

  19. Hydrodynamical simulations of the jet in the symbiotic star MWC 560. I. Structure, emission and synthetic absorption line profiles

    NASA Astrophysics Data System (ADS)

    Stute, M.; Camenzind, M.; Schmid, H. M.

    2005-01-01

    We performed hydrodynamical simulations with and without radiative cooling of jet models with parameters representative of the symbiotic system MWC 560. For symbiotic systems we have to perform jet simulations of a pulsed underdense jet in a high density ambient medium. We present the jet structure resulting from our simulations and calculate emission plots which account for expected radiative processes. In addition, our calculations provide expansion velocities for the jet bow shock, the density and temperature structure in the jet, and the propagation and evolution of the jet pulses. In MWC 560 the jet axis is parallel to the line of sight so that the outflowing jet gas can be seen as blue shifted, variable absorption lines in the continuum of the underlying jet source. Based on our simulations we calculate and discuss synthetic absorption profiles. Based on a detailed comparison between model spectra and observations we discuss our hydrodynamical calculations for a pulsed jet in MWC 560 and suggest improvements for future models. Figures \\ref{skizze}, \\ref{modi_det}, \\ref{slice_cool_p}, \\ref{NV_3.0_synch}, \\ref{modelicool_greyscale}, \\ref{line_rem}-\\ref{line_dv} and \\ref{line_zmax} are only available in electronic form at http://www.edpsciences.org

  20. Spectral Line Profile Analysis Using Higher Diffraction Order in Vacuum Ultraviolet Region

    SciTech Connect

    Machida, M.; Daltrini, A. M.; Severo, J. H. F.; Nascimento, I. C.; Sanada, E. K.; Elizondo, J. I.; Kuznetsov, Y. K.; Galvao, R. M. O.

    2008-04-07

    Using a one meter VUV spectrometer and a MCP coupled to a CCD detector on TCABR tokamak, ion temperatures from impurity species have been measured and much better spectral resolution was obtained using higher order diffraction lines. Due to very small Doppler effect in the VUV region compared to large instrumental broadening, ion temperatures obtained from first order diffraction present large errors. The use of second, third and fourth order diffraction emissions increases the line broadening and results in lower error temperature measurements.

  1. Profiles.

    ERIC Educational Resources Information Center

    School Arts, 1979

    1979-01-01

    Profiles seven Black, Native American, and Chicano artists and art teachers: Hale A. Woodruff, Allan Houser, Luis Jimenez, Betrand D. Phillips, James E. Pate, I, and Fernando Navarro. This article is part of a theme issue on multicultural art. (SJL)

  2. On the line-shape analysis of Compton profiles and its application to neutron scattering

    NASA Astrophysics Data System (ADS)

    Romanelli, G.; Krzystyniak, M.

    2016-05-01

    Analytical properties of Compton profiles are used in order to simplify the analysis of neutron Compton scattering experiments. In particular, the possibility to fit the difference of Compton profiles is discussed as a way to greatly decrease the level of complexity of the data treatment, making the analysis easier, faster and more robust. In the context of the novel method proposed, two mathematical models describing the shapes of differenced Compton profiles are discussed: the simple Gaussian approximation for harmonic and isotropic local potential, and an analytical Gauss-Hermite expansion for an anharmonic or anisotropic potential. The method is applied to data collected by VESUVIO spectrometer at ISIS neutron and muon pulsed source (UK) on Copper and Aluminium samples at ambient and low temperatures.

  3. Albumin and alpha-fetoprotein gene transcription in rat hepatoma cell lines is correlated with specific DNA hypomethylation and altered chromatin structure in the 5' region.

    PubMed Central

    Tratner, I; Nahon, J L; Sala-Trepat, J M; Venetianer, A

    1987-01-01

    We examined DNA methylation and DNase I hypersensitivity of the alpha-fetoprotein (AFP) and albumin gene region in hepatoma cell lines which showed drastic differences in the level of expression of these genes. We assayed for methylation of the CCGG sequences by using the restriction enzyme isoschizomers HpaII and MspI. We found two methylation sites located in the 5' region of the AFP gene and one in exon 1 of the albumin gene for which hypomethylation is correlated with gene expression. Another such site, located about 4,000 base pairs upstream from the AFP gene, seems to be correlated with the tissue specificity of the cells. DNase I-hypersensitive sites were mapped by using the indirect end-labeling technique with cloned genomic DNA probes. Three tissue-specific DNase I-hypersensitive sites were mapped in the 5' flanking region of the AFP gene when this gene was transcribed. Similarly, three tissue-specific DNase I-hypersensitive sites were detected upstream from the albumin gene in producing cell lines. In both cases, the most distal sites were maintained after cessation of gene activity and appear to be correlated with the potential expression of the gene. Interestingly, specific methylation sites are localized in the same DNA region as DNase I hypersensitive sites. This suggests that specific alterations of chromatin structure and changes in methylation pattern occur in specific critical regulatory regions upstream from the albumin and AFP genes in rat hepatoma cell lines. Images PMID:2439898

  4. An isolated line-shape model to go beyond the Voigt profile in spectroscopic databases and radiative transfer codes

    NASA Astrophysics Data System (ADS)

    Ngo, N. H.; Lisak, D.; Tran, H.; Hartmann, J.-M.

    2013-11-01

    We demonstrate that a previously proposed model opens the route for the inclusion of refined non-Voigt profiles in spectroscopic databases and atmospheric radiative transfer codes. Indeed, this model fulfills many essential requirements: (i) it takes both velocity changes and the speed dependences of the pressure-broadening and -shifting coefficients into account. (ii) It leads to accurate descriptions of the line shapes of very different molecular systems. Tests made for pure H2, CO2 and O2 and for H2O diluted in N2 show that residuals are down to ≃0.2% of the peak absorption, (except for the untypical system of H2 where a maximum residual of ±3% is reached), thus fulfilling the precision requirements of the most demanding remote sensing experiments. (iii) It is based on a limited set of parameters for each absorption line that have known dependences on pressure and can thus be stored in databases. (iv) Its calculation requires very reasonable computer costs, only a few times higher than that of a usual Voigt profile. Its inclusion in radiative transfer codes will thus induce bearable CPU time increases. (v) It can be extended in order to take line-mixing effects into account, at least within the so-called first-order approximation.

  5. Detection of harmonics and recovery of the absorption line profile using logarithmic-transformed wavelength modulation spectroscopy

    NASA Astrophysics Data System (ADS)

    Cong, Menglong; Sun, Dandan

    2016-07-01

    A versatile signal processing strategy for eliminating the residual amplitude modulation (RAM) and distortion in tunable diode laser wavelength modulation spectroscopy is theoretically demonstrated and experimentally validated. The strategy involves logarithmic transformation and differential detection, which are achieved using a homemade circuit. Through the logarithmic transformation, the optical intensity modulation of the laser, which performs as the source of RAM and distortion, is separated from the absorption-induced power attenuation and further balanced during the differential detection. The first harmonic, which is proportional to the first-order derivative of the absorption line profile in the case of a small modulation index, is extracted along with the second harmonic and is integrated for the recovery of the absorption line profile. The experiments are carried out for CH4 at its R(3) absorption line of the 2ν3 overtone for validation of the system, and the derived results are found to be in good agreement with the theoretical simulations. These promising results indicate the high potential of the strategy for absorption spectrum-based determination of gas properties.

  6. Lines

    ERIC Educational Resources Information Center

    Mires, Peter B.

    2006-01-01

    National Geography Standards for the middle school years generally stress the teaching of latitude and longitude. There are many creative ways to explain the great grid that encircles our planet, but the author has found that students in his college-level geography courses especially enjoy human-interest stories associated with lines of latitude…

  7. Phenoxazine derivative, 2-amino-4,4alpha-dihydro-4alpha,7-dimethyl-3H-phenoxazine-3-one suppresses growth of human retinoblastoma cell line Y79 in vitro and in vivo.

    PubMed

    Kimura, Keisuke; Usui, Yoshihiko; Hattori, Takaaki; Yamakawa, Naohiko; Goto, Hiroshi; Usui, Masahiko; Okada, Shinya; Shirato, Ken; Tomoda, Akio

    2008-01-01

    The aim of the study was to evaluate the in vitro and in vivo antitumor effects of the 2-amino-4,4alpha-dihydro-4alpha,7-dimethyl-3H-phenoxazine-3-one (Phx-1) on the human retinoblastoma cell line Y79. The in vitro effects of Phx-1 on cell viability and apoptosis of the human retinoblastoma Y79 cells, were studied by using colorimetric and flow-cytometric methods. The in vivo antitumor effects of Phx-1 on the human retinoblastoma Y79 cells subcutaneously transplanted in BALB/c nude mice were studied, examining the tumor size, the adverse effects on the mice and the histopathological evaluations including hematoxylin and eosin and immunohistochemical staining in the mass of tumors of human retinoblastoma Y79 cells isolated from the mice. Phx-1 suppressed the viability of Y79 cells dose- and time-dependently and induced apoptosis in Y79 cells in vitro. Phx-1 markedly reduced the growth of Y79 cells transplanted into the mice without causing bodyweight loss. Pathological findings of the tumor mass isolated from mice revealed that the tumor of Y79 cells treated with Phx-1 had a decreased mitotic index, decreased expression of Ki67 and p53, no alteration of bcl-2 level and increased caspase-3 activity compared with the the control. Present results suggested that Phx-1 demonstrated antitumor activity against the human retinoblastoma Y79 cells in vitro and in vivo, by inhibiting cell growth and inducing apoptosis. In addition, Phx-1 exerted few adverse side effects on the mice. Phx-1 may be a useful antitumor drug in the treatment of retinoblastoma, which is the most common and serious intraocular malignant tumor. PMID:18097569

  8. Quantitative profiling of housekeeping and Epstein-Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray

    PubMed Central

    Bernasconi, Michele; Berger, Christoph; Sigrist, Jürg A; Bonanomi, Athos; Sobek, Jens; Niggli, Felix K; Nadal, David

    2006-01-01

    Background The Epstein-Barr virus (EBV) is associated with lymphoid malignancies, including Burkitt's lymphoma (BL), and can transform human B cells in vitro. EBV-harboring cell lines are widely used to investigate lymphocyte transformation and oncogenesis. Qualitative EBV gene expression has been extensively described, but knowledge of quantitative transcription is lacking. We hypothesized that transcription levels of EBNA1, the gene essential for EBV persistence within an infected cell, are similar in BL cell lines. Results To compare quantitative gene transcription in the BL cell lines Namalwa, Raji, Akata, Jijoye, and P3HR1, we developed an oligonucleotide microarray chip, including 17 housekeeping genes, six latent EBV genes (EBNA1, EBNA2, EBNA3A, EBNA3C, LMP1, LMP2), and four lytic EBV genes (BZLF1, BXLF2, BKRF2, BZLF2), and used the cell line B95.8 as a reference for EBV gene transcription. Quantitative polymerase chain reaction assays were used to validate microarray results. We found that transcription levels of housekeeping genes differed considerably among BL cell lines. Using a selection of housekeeping genes with similar quantitative transcription in the tested cell lines to normalize EBV gene transcription data, we showed that transcription levels of EBNA1 were quite similar in very different BL cell lines, in contrast to transcription levels of other EBV genes. As demonstrated with Akata cells, the chip allowed us to accurately measure EBV gene transcription changes triggered by treatment interventions. Conclusion Our results suggest uniform EBNA1 transcription levels in BL and that microarray profiling can reveal novel insights on quantitative EBV gene transcription and its impact on lymphocyte biology. PMID:16756670

  9. Metabolism and fatty acid profile in fat and lean rainbow trout lines fed with vegetable oil: effect of carbohydrates.

    PubMed

    Kamalam, Biju Sam; Médale, Françoise; Larroquet, Laurence; Corraze, Geneviève; Panserat, Stephane

    2013-01-01

    The present study investigated the effect of dietary carbohydrates on metabolism, with special focus on fatty acid bioconversion and flesh lipid composition in two rainbow trout lines divergently selected for muscle lipid content and fed with vegetable oils. These lines were chosen based on previously demonstrated potential differences in LC-PUFA synthesis and carbohydrate utilization. Applying a factorial study design, juvenile trout from the lean (L) and the fat (F) line were fed vegetable oil based diets with or without gelatinised starch (17.1%) for 12 weeks. Blood, liver, muscle, intestine and adipose tissue were sampled after the last meal. Feed intake and growth was higher in the L line than the F line, irrespective of the diet. Moderate postprandial hyperglycemia, strong induction of hepatic glucokinase and repressed glucose-6-phosphatase transcripts confirmed the metabolic response of both lines to carbohydrate intake. Further at the transcriptional level, dietary carbohydrate in the presence of n-3 LC-PUFA deficient vegetable oils enhanced intestinal chylomicron assembly, disturbed hepatic lipid metabolism and importantly elicited a higher response of key desaturase and elongase enzymes in the liver and intestine that endorsed our hypothesis. PPARγ was identified as the factor mediating this dietary regulation of fatty acid bioconversion enzymes in the liver. However, these molecular changes were not sufficient to modify the fatty acid composition of muscle or liver. Concerning the genotype effect, there was no evidence of substantial genotypic difference in lipid metabolism, LC-PUFA synthesis and flesh fatty acid profile when fed with vegetable oils. The minor reduction in plasma glucose and triglyceride levels in the F line was linked to potentially higher glucose and lipid uptake in the muscle. Overall, these data emphasize the importance of dietary macro-nutrient interface in evolving fish nutrition strategies. PMID:24124573

  10. Metabolism and Fatty Acid Profile in Fat and Lean Rainbow Trout Lines Fed with Vegetable Oil: Effect of Carbohydrates

    PubMed Central

    Kamalam, Biju Sam; Médale, Françoise; Larroquet, Laurence; Corraze, Geneviève; Panserat, Stephane

    2013-01-01

    The present study investigated the effect of dietary carbohydrates on metabolism, with special focus on fatty acid bioconversion and flesh lipid composition in two rainbow trout lines divergently selected for muscle lipid content and fed with vegetable oils. These lines were chosen based on previously demonstrated potential differences in LC-PUFA synthesis and carbohydrate utilization. Applying a factorial study design, juvenile trout from the lean (L) and the fat (F) line were fed vegetable oil based diets with or without gelatinised starch (17.1%) for 12 weeks. Blood, liver, muscle, intestine and adipose tissue were sampled after the last meal. Feed intake and growth was higher in the L line than the F line, irrespective of the diet. Moderate postprandial hyperglycemia, strong induction of hepatic glucokinase and repressed glucose-6-phosphatase transcripts confirmed the metabolic response of both lines to carbohydrate intake. Further at the transcriptional level, dietary carbohydrate in the presence of n-3 LC-PUFA deficient vegetable oils enhanced intestinal chylomicron assembly, disturbed hepatic lipid metabolism and importantly elicited a higher response of key desaturase and elongase enzymes in the liver and intestine that endorsed our hypothesis. PPARγ was identified as the factor mediating this dietary regulation of fatty acid bioconversion enzymes in the liver. However, these molecular changes were not sufficient to modify the fatty acid composition of muscle or liver. Concerning the genotype effect, there was no evidence of substantial genotypic difference in lipid metabolism, LC-PUFA synthesis and flesh fatty acid profile when fed with vegetable oils. The minor reduction in plasma glucose and triglyceride levels in the F line was linked to potentially higher glucose and lipid uptake in the muscle. Overall, these data emphasize the importance of dietary macro-nutrient interface in evolving fish nutrition strategies. PMID:24124573

  11. Microbial Community Profile of a Lead Service Line Removed from a Drinking Water Distribution System

    EPA Science Inventory

    A corroded lead water pipe was removed from a drinking water distribution system and the microbial community was profiled using 16S rDNA techniques. This is the first report of the characterization of biofilm on a surface of a corroded lead drinking water pipe. The majority of ...

  12. Tests of Specialty Breeding Lines I: Size Profiles From Washington Suggest Several Marketing Options

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Yield trials of recently selected specialty clones were conducted in 2006 at the Paterson, WA field site. Two trials were conducted, each consisting of 3 replications of 10-hill plots. In recent years our industry partners have expressed an intense interest in the tuber size profiles. We, therefo...

  13. Investigation of thermodynamic equilibrium in laser-induced aluminum plasma using the Hα line profiles and Thomson scattering spectra

    NASA Astrophysics Data System (ADS)

    Cvejić, M.; DzierŻega, K.; Pieta, T.

    2015-07-01

    We have studied isothermal equilibrium in the laser-induced plasma from aluminum pellets in argon at pressure of 200 mbar by using a method which combines the standard laser Thomson scattering and analysis of the Hα, Stark-broadened, line profiles. Plasma was created using 4.5 ns, 4 mJ pulses from a Nd:YAG laser at 1064 nm. While electron density and temperature were determined from the electron feature of Thomson scattering spectra, the heavy particle temperature was obtained from the Hα full profile applying computer simulation including ion-dynamical effects. We have found strong imbalance between these two temperatures during entire plasma evolution which indicates its non-isothermal character. At the same time, according to the McWhirter criterion, the electron density was high enough to establish plasma in local thermodynamic equilibrium.

  14. Integrative proteomic profiling of ovarian cancer cell lines reveals precursor cell associated proteins and functional status

    PubMed Central

    Coscia, F.; Watters, K. M.; Curtis, M.; Eckert, M. A.; Chiang, C. Y.; Tyanova, S.; Montag, A.; Lastra, R. R.; Lengyel, E.; Mann, M.

    2016-01-01

    A cell line representative of human high-grade serous ovarian cancer (HGSOC) should not only resemble its tumour of origin at the molecular level, but also demonstrate functional utility in pre-clinical investigations. Here, we report the integrated proteomic analysis of 26 ovarian cancer cell lines, HGSOC tumours, immortalized ovarian surface epithelial cells and fallopian tube epithelial cells via a single-run mass spectrometric workflow. The in-depth quantification of >10,000 proteins results in three distinct cell line categories: epithelial (group I), clear cell (group II) and mesenchymal (group III). We identify a 67-protein cell line signature, which separates our entire proteomic data set, as well as a confirmatory publicly available CPTAC/TCGA tumour proteome data set, into a predominantly epithelial and mesenchymal HGSOC tumour cluster. This proteomics-based epithelial/mesenchymal stratification of cell lines and human tumours indicates a possible origin of HGSOC either from the fallopian tube or from the ovarian surface epithelium. PMID:27561551

  15. Coorelated UV/Optical Line Profile Variations in Mild Be Stars

    NASA Astrophysics Data System (ADS)

    Smith, Myron A.

    Mild classical Be stars offer an opportunity to monitor instabilities near the stars' surfaces that may ultimately be responsible for the "Be (episodic mass loss) phenomenon." In a previous study of the mild-Be prototype lambda Eri, we discovered shortlived "dimple" shaped features in the He I lambda 6678 line of this star ~40% of the time. In 1990 we were awarded three shifts of IUE time simultaneous with optical spectroscopy. Our observations demonstrated that the C IV and perhaps N V resonance doublet usually weaken by 15-25% when a dimple appears in that star's He I lambda 6678 line. In this proposal we ask for four shifts of IUE time to search for this UV/optical line correlation for four other mild Be stars in which dimples have just been discovered. If the C IV lines weaken when optical line "dimples" appear, as was true for our campaign on lambda Eri, then we will have a new density diagnostic from which to estimate the masses of structures responsible for the dimples. If these masses bear out present estimates, we could have a new means to study the circulation between the photosphere and the environs of a Be star.

  16. Observations of interstellar hydrogen and deuterium toward Alpha Centauri A

    NASA Technical Reports Server (NTRS)

    Landsman, W. B.; Henry, R. C.; Moos, H. W.; Linsky, J. L.

    1984-01-01

    A composite profile is presented of the Ly-alpha emission line of Alpha Cen A, obtained from 10 individual spectra with the high-resolution spectrograph aboard the International Ultraviolet Explorer (IUE) satellite. There is excellent overall agreement with two previous Copernicus observations. Interstellar deuterium is detected, and a lower limit is set on the deuterium to hydrogen ratio of nDI/nHI greater than 8 x 10 to the -6th. In addition, the deuterium bulk velocity appears blueshifted by 8 + or - 2 km/s with respect to interstellar hydrogen, suggesting a nonuniform medium along the line of sight.

  17. Development of a stable cell line with an intact PGC-1alpha/ERRalpha axis for screening environmental chemicals

    PubMed Central

    Teng, Christina T.; Beames, Burton; Merrick, B. Alex; Martin, Negin; Romeo, Charles; Jetten, Anton M.

    2014-01-01

    The estrogen-related receptor α (ERRα) and the peroxisome proliferator-activated receptor γ (PPARγ) coactivator 1α (PGC-1α) play critical roles in the control of several physiological functions, including the regulation of genes involved in energy homeostasis. However, little is known about the ability of environmental chemicals to disrupt or modulate this important bioenergetics pathway in humans. The goal of this study was to develop a cell-based assay system with an intact PGC-1α/ERRα axis that could be used as a screening assay for detecting such chemicals. To this end, we successfully generated several stable cell lines expressing PGC-1α and showed that the reporter driven by the native ERRα hormone response unit (AAB-Luc) is active in these cell lines and that the activation is PGC-1α-dependent. Furthermore, we show that this activation can be blocked by the ERRα selective inverse agonist, XCT790. In addition, we find that genistein and bisphenol A further stimulate the reporter activity, while kaempferol has minimal effect. These cell lines will be useful for identifying environmental chemicals that modulate this important pathway. PMID:24457025

  18. mRNA expression profiles of primary high-grade central osteosarcoma are preserved in cell lines and xenografts

    PubMed Central

    2011-01-01

    Background Conventional high-grade osteosarcoma is a primary malignant bone tumor, which is most prevalent in adolescence. Survival rates of osteosarcoma patients have not improved significantly in the last 25 years. Aiming to increase this survival rate, a variety of model systems are used to study osteosarcomagenesis and to test new therapeutic agents. Such model systems are typically generated from an osteosarcoma primary tumor, but undergo many changes due to culturing or interactions with a different host species, which may result in differences in gene expression between primary tumor cells, and tumor cells from the model system. We aimed to investigate whether gene expression profiles of osteosarcoma cell lines and xenografts are still comparable to those of the primary tumor. Methods We performed genome-wide mRNA expression profiling on osteosarcoma biopsies (n = 76), cell lines (n = 13), and xenografts (n = 18). Osteosarcoma can be subdivided into several histological subtypes, of which osteoblastic, chondroblastic, and fibroblastic osteosarcoma are the most frequent ones. Using nearest shrunken centroids classification, we generated an expression signature that can predict the histological subtype of osteosarcoma biopsies. Results The expression signature, which consisted of 24 probes encoding for 22 genes, predicted the histological subtype of osteosarcoma biopsies with a misclassification error of 15%. Histological subtypes of the two osteosarcoma model systems, i.e. osteosarcoma cell lines and xenografts, were predicted with similar misclassification error rates (15% and 11%, respectively). Conclusions Based on the preservation of mRNA expression profiles that are characteristic for the histological subtype we propose that these model systems are representative for the primary tumor from which they are derived. PMID:21933437

  19. Functional and transcriptional profiling of MUTZ-3, a myeloid cell line acting as a model for dendritic cells

    PubMed Central

    Larsson, Kristina; Lindstedt, Malin; Borrebaeck, Carl A K

    2006-01-01

    The incidence of allergy is steadily increasing, but the molecular mechanisms involved in the allergic immune response are still not fully understood. In particular, further investigations focusing on dendritic cells, which are central in orchestrating the immune response, are needed. The objective of this study was to investigate the ability of myeloid leukaemia-derived cell lines, such as KG-1, THP-1 and MUTZ-3, to serve as in vitro models for dendritic cells. The ability of these cell lines to mature into functional dendritic cells, expressing costimulatory molecules, was assessed by functional and transcriptional profiling and compared with that of monocyte-derived dendritic cells, which are now used as a standard source of dendritic cells. High-density microarray analysis was utilized to study the transcriptional activity and kinetics of activation of the differentiated MUTZ-3 cell line, in response to a cocktail of inflammatory cytokines. The data obtained clearly demonstrate that MUTZ-3 cells have the ability to induce antigen-independent proliferation in CD4+ CD45RA+ T cells, whereas KG-1 and THP-1 only induced a marginal response. Furthermore, MUTZ-3 displayed the phenotypic and transcriptional profiles of immature dendritic cells, after differentiation with granulocyte–macrophage colony-stimulating factor and interleukin-4. Upon activation with inflammatory cytokines, MUTZ-3 matured phenotypically and exhibited a gene induction similar to that of monocyte-derived dendritic cells. This delineation of the cellular and transcriptional activity of MUTZ-3, in response to maturational stimuli, demonstrates the significance of this cell line as a model for functional studies of inflammatory responses. PMID:16423051

  20. Effect of D-allose on prostate cancer cell lines: phospholipid profiling by nanoflow liquid chromatography-tandem mass spectrometry.

    PubMed

    Jeong, Rae Ung; Lim, Sangsoo; Kim, Myoung Ok; Moon, Myeong Hee

    2011-08-01

    D-Allose, a rare, naturally occurring monosaccharide, is known to exert anti-proliferative effects on cancer cells. The effects of D-allose on the cellular membranes of hormone-refractory prostate cancer cell line (DU145), hormone-sensitive prostate cancer cell line (LNCaP), and normal prostate epithelial cells (PrEC) were studied at the molecular level by phospholipid (PL) profiling using a shotgun lipidomic method. The molecular structures of 85 PL species including 23 phosphatidylcholines, 12 phosphatidylethanolamines (PEs), 11 phosphatidylserines (PSs), 16 phosphatidylinositols, 9 phosphatidic acids (PAs), and 14 phosphatidylglycerols (PGs) were identified by data-dependent collision-induced dissociation of nanoflow liquid chromatography-tandem mass spectrometry, and the PL amounts were quantified. The addition of D-allose to prostate cancer cell lines during their growth phases had negligible or decreased effects on the relative regulation of PL species, but several new PS molecules (two for DU145 and three for LNCaP) emerged. In contrast, experiments on the PrEC cell line revealed that some high abundant species (14:0/14:0-PE, 16:2/16:0-PG, and 20:6/18:1-PA) showed significant increases in concentration. These findings support a mechanism for the anti-proliferative effect of D-allose on prostate cancer cell lines that involves the induction of programmed cell death since PS molecules are known to induce apoptosis. Principal component analysis was carried out to examine differences in PL distributions among the three cell lines promoted by D-allose. PMID:21633842

  1. Line profile analysis of an astronomical spectrograph with a laser frequency comb

    NASA Astrophysics Data System (ADS)

    Zhao, Fei; Zhao, Gang; Lo Curto, Gaspare; Wang, Hui-Juan; Liu, Yu-Juan; Wang, Liang; Wang, Wei

    2014-08-01

    We present a study of the spectral line shape associated with a High Resolution Spectrograph on the 2.16 m telescope at the Xinglong Observing Station of National Astronomical Observatories, Chinese Academy of Sciences. This measurement is based on modeling the instrumental line shape obtained by unresolved modes from a Yb-fiber mode-locked laser frequency comb. With the current repetition rate of 250 MHz and 26 GHz mode spacing on the spectrograph, we find the absolute variation of the line center, 0.0597 pixel in the direction of the CCDs, and 0.00275 pixel (~3 m s-1) for relative variation in successive exposures on a short timescale. A novel double-Gaussian model is presented to improve the quality of the fit by a factor of 2.47 in a typical single exposure. We also use analysis with raw moments and central moments to characterize the change in line shape across the detector. A trend in charge transfer efficiency can be found on the E2V 4096 × 4096 CCD that provides a correction for wavelength calibration aiming to reach a level of precision for radial velocity below 1 ms-1.

  2. Profiling polyphenols of two diploid strawberry (Fragaria vesca) inbred lines using UHPLC-HRMSn

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phenolic compounds in the fruits of two diploid strawberries (Fragaria vesca f. semperflorens) inbred lines-Ruegen F7-4 (a red fruited genotype) and YW5AF7 (a yellow fruited genotype) were characterized using ultra high-performance liquid chromatography in tandem with high resolution mass spectromet...

  3. The Influence of the Photoionizing Radiation Spectrum on Metal-Line Ratios in Ly(alpha) Forest Clouds

    NASA Technical Reports Server (NTRS)

    Giroux, Mark L.; Shull, J. Michael

    1997-01-01

    Recent measurements of Si IV/C IV ratios in the high-redshift Ly(alpha) forest (Songaila & Cowie, AJ, 112, 335 (1996a); Savaglio et at., A&A (in press) (1997)) have opened a new window on chemical enrichment and the first generations of stars. However, the derivation of accurate Si/C abundances requires reliable ionization corrections, which are strongly dependent on the spectral shape of the metagalactic ionizing background and on the 'local effects' of hot stars in nearby galaxies. Recent models have assumed power-law quasar ionizing backgrounds plus a decrement at 4 Ryd to account for He II attenuation in intervening clouds. However, we show that realistic ionizing backgrounds based on cosmological radiative transfer models produce more complex ionizing spectra between 1-5 Ryd that are critical to interpreting ions of Si and C. We also make a preliminary investigation of the effects of He II ionization front nonoverlap. Because the attenuation and reemission by intervening clouds enhance Si IV relative to C the observed high Si IV/C IV ratios do not require an unrealistic Si overproduction (Si/C greater than or equal to 3 (Si/C)(solar mass)). If the ionizing spectrum is dominated by 'local effects' from massive stars, even larger Si IV/C IV ratios are possible. However, unless stellar radiation dominates quasars by more than a factor of 10, we confirm the evidence for some Si overproduction by massive stars; values Si/C approx. 2(Si/C)(solar mass) fit the measurements better than solar abundances. Ultimately, an adequate interpretation of the ratios of C IV, Si IV, and C II may require hot, collisionally ionized gas in a multiphase medium.

  4. Calibration issues in delta alpha /alpha .

    NASA Astrophysics Data System (ADS)

    Molaro, Paolo; Centurión, Miriam; Levshakov, Sergei

    Laser Comb Wavelength calibration shows that the ThAr one is locally unreliable with possible deviations of up to 100 {m s}-1 within one order range, while delivering an overall 1 {m s}-1 accuracy (Wilken et al 2009). Such deviation corresponds to delta alpha /alpha ≈ 7* 10-6 for a Fe II-Mg II pair. Comparison of line shifts among the 5 Fe II lines, with almost identical sensitivity to fine structure constant changes, offers a clean way to directly test the presence of possible local wavelength calibration errors of whatever origin. We analyzed 5 absorption systems, with zabs ranging from 1.15 to 2.19 towards 3 bright QSOs. The results show that while some lines are aligned within 20 {m s}-1, others reveal large deviations reaching 200 {m s}-1 or higher and corresponding to a delta alpha /alpha > 10-5 level. The origin of these deviations is not clearly identified but could be related to the adaptation of wavelength calibration to CCD manufacturing irregularities. These results suggest that to draw conclusions from delta alpha /alpha analysis based on one or only few lines must be done with extreme care.

  5. Novel 5alpha-reductase inhibitors: synthesis, structure-activity studies, and pharmacokinetic profile of phenoxybenzoylphenyl acetic acids.

    PubMed

    Salem, Ola I A; Frotscher, Martin; Scherer, Christiane; Neugebauer, Alexander; Biemel, Klaus; Streiber, Martina; Maas, Ruth; Hartmann, Rolf W

    2006-01-26

    Novel substituted benzoyl benzoic acids and phenylacetic acids 1-14 have been synthesized and evaluated for inhibition of rat and human steroid 5alpha-reductase isozymes 1 and 2. The compounds turned out to be potent and selective human type 2 enzyme inhibitors, exhibiting IC(50) values in the nanomolar range. The phenylacetic acid derivatives were more potent than the analogous benzoic acids. Bromination in the 4-position of the phenoxy moiety led to the strongest inhibitor in this class (12; IC(50) = 5 nM), which was equipotent to finasteride. Since oral absorption is essential for a potential drug, 12 was further examined. In the parallel artificial membrane permeation assay (PAMPA) it turned out to be a good permeator, whereas it was a medium permeator in Caco2 cells. After oral administration (40 mg/kg) to rats a high bioavailability and a biological half-life of 5.5 h were observed, making it a promising candidate for clinical evaluation. PMID:16420060

  6. An Abel transform for deriving line-of-sight wind profiles from LEO-LEO infrared laser occultation measurements

    NASA Astrophysics Data System (ADS)

    Syndergaard, S.; Kirchengast, G.

    2016-03-01

    We have developed a formula for the retrieval of the line-of-sight (l.o.s.) wind speed from future low Earth orbit (LEO) satellite-to-satellite infrared laser occultation measurements. The formula involves an Abelian integral transform akin to the Abel transform widely used for deriving refractive index from bending angle in Global Navigation Satellite System radio occultation measurements. Besides the Abelian integral transform, the formula is derived from a truncated series expansion of the volume absorption coefficient as a function of frequency and includes a simple absorption-line-asymmetry correction term. A first-order formulation (referred to as the standard formula) is complemented by higher-order terms that can be used for high-accuracy computations. Under the assumptions of spherical symmetry and perfect knowledge of spectroscopy, the residual l.o.s. wind error from using the standard formula rather than the high-accuracy formula is assessed to be small compared to that anticipated from measurement errors in a real experiment. Applying the new formula just in standard form to future infrared laser transmission profiles would therefore enable the retrieval of l.o.s. stratospheric wind profiles with an accuracy limited mainly by measurement errors, residual spectroscopic errors, and deviations from spherical symmetry.

  7. Characterization of the ATP-binding cassette transporter gene expression profile in Y79: a retinoblastoma cell line.

    PubMed

    Hendig, Doris; Langmann, Thomas; Zarbock, Ralf; Schmitz, Gerd; Kleesiek, Knut; Götting, Christian

    2009-08-01

    Chemotherapy failure was reported in treatment of retinoblastoma suggesting a role for ATP-binding cassette (ABC) proteins. Little is known about the expression pattern of ABC proteins in this cancer type. We investigated the gene expression profile of 47 ABC proteins in the human retinoblastoma cell line Y79 by TaqMan low-density array. Analysis revealed 31 ABC transporter genes expressed in this tumor cell line. Y79 cells demonstrate high gene expression of ABCA7, ABCA12, ABCB7, ABCB10, ABCC1, ABCC4, ABCD3, ABCE1, ABCF1, ABCF2, and ABCF3 (more than twofold compared to pooled RNA from different tissues). Moreover, we show that Y79 cells exhibit an active calcein efflux pointing to multidrug resistance protein (MRP)-like transporter activity. In summary, we present for the first time an ABC transporter gene expression profile in cells derived from retinoblastoma. Most of the highly expressed ABC transporter genes are typical markers of cancer cells and might exhibit potential targets for medical treatment of retinoblastoma. PMID:19266166

  8. The expansion velocities of laser-produced plasmas determined from extreme ultraviolet spectral line profiles

    NASA Technical Reports Server (NTRS)

    Feldman, U.; Doschek, G. A.; Behring, W. E.; Cohen, L.

    1977-01-01

    The expansion of laser-produced plasma is determined from the shapes of spectral lines of highly ionized iron emitted in the extreme ultraviolet. The plasmas were produced by focusing the pulse from a Nd:glass laser onto solid planar targets, and spectra were recorded with a high-resolution grazing-incidence spectrograph. From the Doppler broadening of lines of Fe XX and Fe XXI, expansion velocities of about 830 km/s were determined. The relative time-averaged ion abundances of Fe XVIII, Fe XIX, Fe XX, and Fe XXI are estimated for three different spectra. The abundances do not differ by more than a factor of 4 for any of the spectra.

  9. Telomerase Inhibition Decreases Alpha-Fetoprotein Expression and Secretion by Hepatocellular Carcinoma Cell Lines: In Vitro and In Vivo Study

    PubMed Central

    Tahtouh, Roula; Azzi, Anne-Sophie; Alaaeddine, Nada; Chamat, Soulaima; Bouharoun-Tayoun, Hasnaa; Wardi, Layal; Raad, Issam; Sarkis, Riad; Antoun, Najibe Abou; Hilal, George

    2015-01-01

    Alpha-fetoprotein (AFP) is a diagnostic marker for hepatocellular carcinoma (HCC). A direct relationship between poor prognosis and the concentration of serum AFP has been observed. Telomerase, an enzyme that stabilizes the telomere length, is expressed by 90% of HCC. The aim of this study was to investigate the effect of telomerase inhibition on AFP secretion and the involvement of the PI3K/Akt/mTOR signaling pathway. Proliferation and viability tests were performed using tetrazolium salt. Apoptosis was determined through the Annexin V assay using flow cytometry. The concentrations of AFP were measured using ELISA kits. The AFP mRNA expression was evaluated using RT-PCR, and cell migration was evaluated using a Boyden chamber assay. The in vivo effect of costunolide on AFP production was tested in NSG mice. Telomerase inhibition by costunolide and BIBR 1532 at 5 and 10 μM decreased AFP mRNA expression and protein secretion by HepG2/C3A cells. The same pattern was obtained with cells treated with hTERT siRNA. This treatment exhibited no apoptotic effect. The AFP mRNA expression and protein secretion by PLC/PRF/5 was decreased after treatment with BIBR1532 at 10 μM. In contrast, no effect was obtained for PLC/PRF/5 cells treated with costunolide at 5 or 10 μM. Inhibition of the PI3K/Akt/mTOR signaling pathway decreased the AFP concentration. In contrast, the MAPK/ERK pathway appeared to not be involved in HepG2/C3A cells, whereas ERK inhibition decreased the AFP concentration in PLC/PRF/5 cells. Modulation of the AFP concentration was also obtained after the inhibition or activation of PKC. Costunolide (30 mg/kg) significantly decreased the AFP serum concentration of NSG mice bearing HepG2/C3A cells. Both the inhibition of telomerase and the inhibition of the PI3K/Akt/mTOR signaling pathway decreased the AFP production of HepG2/C3A and PLC/PRF/5 cells, suggesting a relationship between telomerase and AFP expression through the PI3K/Akt/mTOR pathway PMID:25822740

  10. Telomerase inhibition decreases alpha-fetoprotein expression and secretion by hepatocellular carcinoma cell lines: in vitro and in vivo study.

    PubMed

    Tahtouh, Roula; Azzi, Anne-Sophie; Alaaeddine, Nada; Chamat, Soulaima; Bouharoun-Tayoun, Hasnaa; Wardi, Layal; Raad, Issam; Sarkis, Riad; Antoun, Najibe Abou; Hilal, George

    2015-01-01

    Alpha-fetoprotein (AFP) is a diagnostic marker for hepatocellular carcinoma (HCC). A direct relationship between poor prognosis and the concentration of serum AFP has been observed. Telomerase, an enzyme that stabilizes the telomere length, is expressed by 90% of HCC. The aim of this study was to investigate the effect of telomerase inhibition on AFP secretion and the involvement of the PI3K/Akt/mTOR signaling pathway. Proliferation and viability tests were performed using tetrazolium salt. Apoptosis was determined through the Annexin V assay using flow cytometry. The concentrations of AFP were measured using ELISA kits. The AFP mRNA expression was evaluated using RT-PCR, and cell migration was evaluated using a Boyden chamber assay. The in vivo effect of costunolide on AFP production was tested in NSG mice. Telomerase inhibition by costunolide and BIBR 1532 at 5 and 10 μM decreased AFP mRNA expression and protein secretion by HepG2/C3A cells. The same pattern was obtained with cells treated with hTERT siRNA. This treatment exhibited no apoptotic effect. The AFP mRNA expression and protein secretion by PLC/PRF/5 was decreased after treatment with BIBR1532 at 10 μM. In contrast, no effect was obtained for PLC/PRF/5 cells treated with costunolide at 5 or 10 μM. Inhibition of the PI3K/Akt/mTOR signaling pathway decreased the AFP concentration. In contrast, the MAPK/ERK pathway appeared to not be involved in HepG2/C3A cells, whereas ERK inhibition decreased the AFP concentration in PLC/PRF/5 cells. Modulation of the AFP concentration was also obtained after the inhibition or activation of PKC. Costunolide (30 mg/kg) significantly decreased the AFP serum concentration of NSG mice bearing HepG2/C3A cells. Both the inhibition of telomerase and the inhibition of the PI3K/Akt/mTOR signaling pathway decreased the AFP production of HepG2/C3A and PLC/PRF/5 cells, suggesting a relationship between telomerase and AFP expression through the PI3K/Akt/mTOR pathway. PMID:25822740

  11. In Situ Characterizing Membrane Lipid Phenotype of Human Lung Cancer Cell Lines Using Mass Spectrometry Profiling

    PubMed Central

    He, Manwen; Guo, Shuai; Ren, Junling; Li, Zhili

    2016-01-01

    Abnormal lipid metabolisms are closely associated with cancers. In this study, mass spectrometry was employed to in situ investigate the associations of membrane lipid phenotypes of six human lung cancer cell lines (i.e., A549, H1650, H1975 from adenocarcinoma, H157 and H1703 from squamous cell carcinomas, and H460 from a large cell carcinoma) with cancer cell types and finally total 230 lipids were detected. Based these 230 lipids, partial least-square discriminant analysis indicated that fifteen lipids (i.e., PE 18:0_18:1, PI 18:0_20:4, SM 42:2, PE 16:0_20:4, PE 36:2, PC 36:2, SM 34:1, PA 38:3,C18:0, C22:4, PA 34:2, C20:5, C20:2, C18:2, and CerP 36:2) with variable importance in the projection (VIP) value of > 1.0 could be used to differentiate six cancer cell lines with the Predicted Residual Sum of Square (PRESS) score of 0.1974. Positive correlation between polyunsaturated fatty acids (i.e., C20:4, C22:4, C22:5, and C22:6) and polyunsaturated phospholipids (PE 16:0_20:4, PE 38:4, and PI 18:0_20:4) was observed in lung adenocarcinoma cells, especially for H1975 cells. Three adenocarcinoma cell lines (i.e., A549, H1650, and H1975) could be differentiated from other lung cancer cell lines based on the expression of C18:1, C20:1, C20:2, C20:5, and C22:6. PMID:27162539

  12. Profile of on-line anatomy information resources: design and instructional implications.

    PubMed

    Kim, S; Brinkley, J F; Rosse, C

    2003-01-01

    This study is based on a review of 40 on-line anatomy web resources compiled from sites selected from our own searches as well as sites reviewed and published by an external group (Voiglio et al., 1999, Surg. Radiol. Anat. 21:65-68; Frasca et al., 2000, Surg. Radiol. Anat. 22:107-110). The purpose of our survey was to propose criteria by which anatomy educators could judge the characteristics of the currently available web-based resources for incorporation into the courses they teach. Each site was reviewed and scored based on a survey matrix that included four main categories: 1). site background information, 2). content components, 3). interactivity features, and 4). user interface design components. The average score of the reviewed sites was 3.3 of the total possible score of 10, indicating the limited use of computer-based design features by the majority of sites. We found, however, a number of programs in each of the survey categories that could serve as prototypes for designing future on-line anatomy resources. From the survey we conclude that various design features are less important than the comprehensiveness, depth, and logical organization of content. We suggest that the content should be sufficient for supporting explicitly defined educational objectives, which should target specific end-user populations. The majority of anatomy programs currently accessible on-line fall short of these requirements. There is a need for a coordinated and synergistic effort to generate a comprehensive anatomical information resource that is of sufficient quality and depth to support higher levels of learning beyond the memorization of structure names. Such a resource is a prerequisite for meaningful on-line anatomy education. PMID:12486740

  13. In Situ Characterizing Membrane Lipid Phenotype of Human Lung Cancer Cell Lines Using Mass Spectrometry Profiling.

    PubMed

    He, Manwen; Guo, Shuai; Ren, Junling; Li, Zhili

    2016-01-01

    Abnormal lipid metabolisms are closely associated with cancers. In this study, mass spectrometry was employed to in situ investigate the associations of membrane lipid phenotypes of six human lung cancer cell lines (i.e., A549, H1650, H1975 from adenocarcinoma, H157 and H1703 from squamous cell carcinomas, and H460 from a large cell carcinoma) with cancer cell types and finally total 230 lipids were detected. Based these 230 lipids, partial least-square discriminant analysis indicated that fifteen lipids (i.e., PE 18:0_18:1, PI 18:0_20:4, SM 42:2, PE 16:0_20:4, PE 36:2, PC 36:2, SM 34:1, PA 38:3,C18:0, C22:4, PA 34:2, C20:5, C20:2, C18:2, and CerP 36:2) with variable importance in the projection (VIP) value of > 1.0 could be used to differentiate six cancer cell lines with the Predicted Residual Sum of Square (PRESS) score of 0.1974. Positive correlation between polyunsaturated fatty acids (i.e., C20:4, C22:4, C22:5, and C22:6) and polyunsaturated phospholipids (PE 16:0_20:4, PE 38:4, and PI 18:0_20:4) was observed in lung adenocarcinoma cells, especially for H1975 cells. Three adenocarcinoma cell lines (i.e., A549, H1650, and H1975) could be differentiated from other lung cancer cell lines based on the expression of C18:1, C20:1, C20:2, C20:5, and C22:6. PMID:27162539

  14. Pharmacological profiling of kinase dependency in cell lines across triple-negative breast cancer subtypes

    PubMed Central

    Fink, Lauren S.; Beatty, Alexander; Devarajan, Karthik; Peri, Suraj; Peterson, Jeffrey R.

    2014-01-01

    Triple-negative breast cancers (TNBC), negative for estrogen receptor, progesterone receptor, and Her2 amplification, are resistant to standard targeted therapies and exhibit a poor prognosis. Furthermore, they are highly heterogeneous with respect to genomic alterations, and common therapeutic targets are lacking though substantial evidence implicates dysregulated kinase signaling. Recently, six subtypes of TNBC were identified based on gene expression and were proposed to predict sensitivity to a variety of therapeutic agents including kinase inhibitors. To test this hypothesis, we screened a large collection of well-characterized, small-molecule kinase inhibitors for growth inhibition in a panel of TNBC cell lines representing all six subtypes. Sensitivity to kinase inhibition correlated poorly with TNBC subtype. Instead, unsupervised clustering segregated TNBC cell lines according to clinically relevant features including dependence on epidermal growth factor signaling and mutation of the PTEN tumor suppressor. We further report the discovery of kinase inhibitors with selective toxicity to these groups. Overall, however, TNBC cell lines exhibited diverse sensitivity to kinase inhibition consistent with the lack of common driver mutations in this disease. While our findings support specific kinase dependencies in subsets of TNBC, they are not associated with gene expression-based subtypes. Instead we find that mutation status can be an effective predictor of sensitivity to inhibition of particular kinase pathways for subsets of TNBC. PMID:25344583

  15. Doppler shift measurement of Balmer-alpha line spectrum emission from a plasma in a negative hydrogen ion source

    SciTech Connect

    Wada, M. Doi, K.; Kisaki, M.; Nakano, H.; Tsumori, K.; Nishiura, M.

    2015-04-08

    Balmer-α light emission from the extraction region of the LHD one-third ion source has shown a characteristic Doppler broadening in the wavelength spectrum detected by a high resolution spectrometer. The spectrum resembles Gaussian distribution near the wavelength of the intensity peak, while it has an additional component of a broader foot. The measured broadening near the wavelength of the intensity peak corresponds to 0.6 eV hydrogen atom temperature. The spectrum exhibits a larger expansion in the blue wing which becomes smaller when the line of sight is tilted toward the driver region from the original observation axis parallel to the plasma grid. A surface collision simulation model predicts the possibility of hydrogen reflection at the plasma grid surface to form a broad Balmer-α light emission spectrum.

  16. Stable transfection of protein kinase C alpha cDNA in hormone-dependent breast cancer cell lines

    PubMed Central

    Tonetti, D A; Chisamore, M J; Grdina, W; Schurz, H; Jordan, V C

    2000-01-01

    An inverse relationship between protein kinase C (PKC) activity and oestrogen receptor (ER) expression in human breast cell lines and tumours has been firmly established over the past 10 years. To determine whether specific alterations in PKC expression accompany hormone-independence, we examined the expression of PKC isozymes in the hormone-independent human breast cancer cell clones MCF-7 5C and T47D:C42 compared with their hormone-dependent counterparts, MCF-7 A4, MCF-7 WS8 and T47D:A18 respectively. Both hormone-independent cell clones exhibit elevated PKCα expression and increased basal AP-1 activity compared with the hormone-dependent cell clones. To determine whether PKCα overexpression is sufficient to mediate the hormone-independent phenotype, we stably transfected an expression plasmid containing PKCα cDNA to the T47D:A18 and MCF-7 A4 cell lines. This is the first report of PKCα transfection in T47D cells. In contrast to MCF-7 cells, T47D has the propensity to lose the ER and more readily forms tamoxifen-stimulated tumours in athymic mice. We find that in T47D:A18/PKCα clones, there is concomitant up-regulation of PKC βI and δ, whereas in the MCF-7 A4/PKCα transfectants PKC ɛ is up-regulated. In T47D:A18, but not in MCF-7 A4, PKCα stable transfection is accompanied by down-regulation of ER function whilst basal AP-1 activity is elevated. Our results suggest PKCα overexpression may play a role in growth signalling during the shift from hormone dependent to hormone-independent breast cancers. © 2000 Cancer Research Campaign PMID:10952784

  17. Metabolomic profile of response to supplementation with β-carotene in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention Study123

    PubMed Central

    Mondul, Alison M; Sampson, Joshua N; Moore, Steven C; Weinstein, Stephanie J; Evans, Anne M; Karoly, Edward D; Virtamo, Jarmo

    2013-01-01

    Background: Two chemoprevention trials found that supplementation with β-carotene increased the risk of lung cancer and overall mortality. The biologic basis of these findings remains poorly understood. Objective: The objective was to compare the on-study change in metabolomic profiles of men randomly assigned to receive or not receive β-carotene supplements in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention (ATBC) Study. Design: The ATBC Study was a randomized, double-blind, placebo-controlled, primary cancer prevention trial; participants were Finnish male smokers assigned to 1 of 4 intervention groups: 1) α-tocopherol, 2) β-carotene, 3) both, or 4) placebo. Fifty participants with both baseline and follow-up fasting serum samples were randomly selected from each of these groups. Metabolomic profiling was conducted by mass spectrometry. The association between change in each metabolite over time and trial assignment (β-carotene or no β-carotene) was estimated by linear regression. Results: We measured 489 metabolites, and 17 changed significantly (P < 0.05) in response to β-carotene supplementation. More of these 17 metabolites were of xenobiotic origin than would be expected by chance (9 of 60, or 15%; P = 0.00004). We also found a suggestive association with 1,5-anhydroglucitol—a marker of glycemic control (β = −0.379, P = 0.0071). Conclusions: Male smokers supplemented with β-carotene developed metabolomic profiles consistent with the induction of cytochrome P450 enzymes, the primary metabolizers of xenobiotics in humans. These findings may shed light on the increased mortality associated with β-carotene supplementation in the ATBC Study and suggest the need to explore potential interactions between medication use and dietary supplements, particularly among smokers. This trial was registered at clinicaltrials.gov as NCT00342992. PMID:23803886

  18. Effects of Dietary L-carnosine and Alpha-lipoic Acid on Growth Performance, Blood Thyroid Hormones and Lipid Profiles in Finishing Pigs

    PubMed Central

    Bao, Yinghui; Gao, Chunqi; Hao, Wenbo; Ji, Cheng; Zhao, Lihong; Zhang, Jianyun; Liu, Tao; Ma, Qiugang

    2015-01-01

    The present study was conducted to determine the effects of L-carnosine (LC) and/or alpha-lipoic acid (ALA) supplementation on growth performance, blood thyroid hormones and lipid profiles in finishing pigs. A total of 40 (Landrace×Yorkshire) pigs with an initial body weight of 57.93±3.14 kg were randomly allocated to 4 experimental diets using a 2×2 factorial arrangement with 2 LC supplemental levels (0 or 0.1%) and 2 ALA supplemental levels (0 or 0.03%) in basal diets. The results showed that pigs fed LC-supplemented diets increased final live weight, average daily gain, and average daily feed intake compared to those of pigs fed without LC-supplemented diets (p<0.05). Dietary supplementation with ALA did not affect the growth performance and carcass traits of pigs (p>0.05). Additionally, LC supplementation increased serum triiodothyronine, thyroxine levels, and ALA supplementation increased serum triiodothyronine levels (p<0.05). Serum total cholesterol and triglycerides levels were significantly decreased in LC and ALA supplemented groups, respectively (p<0.05). Moreover, serum low density lipoprotein cholesterol levels were lower in the ALA-supplemented groups than those of pigs fed without ALA-supplemented diets (p<0.05). However, no significant LC×ALA interaction effect on growth performance, blood thyroid hormones and lipid profiles was found. This study suggested that dietary supplementation of LC resulted in better growth performance compared to that of ALA supplementation. L-carnosine and/or ALA supplementation positively modified blood lipid profiles, which may have the potential to prevent cardiovascular diseases. PMID:26194221

  19. GENE EXPRESSION PROFILES OF TWO B-COMPLEX DISPARATE, GENETICALLY INBRED FAYOUMI CHICKEN LINES THAT DIFFER IN SUSCEPTIBILITY TO EIMERIA MAXIMA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study was conducted to discriminate the gene expression profiles following Eimeria maxima infection between two B complex congenic lines (lines M5.1 and M15.2) of Fayoumi chickens which display differences in disease resistance and innate immunity against avian coccidiosis. A cDNA microarray, ...

  20. GENE EXPRESSION PROFILES OF TWO B-COMPLEX DISPARATE, GENETICALLY INBRED FAYOUMI CHICKEN LINES THAT DIFFER IN SUSCEPTIBILITY TO EIMERIA MAXIMA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study was conducted to compare the gene expression profiles following Eimeria maxima infection between two B-complex congenic lines (lines M5.1 and M15.2) of Fayoumi chickens which display differences in disease resistance and innate immunity against avian coccidiosis. A cDNA microarray, const...

  1. Atmospheric profiling via satellite to satellite occultations near water and ozone absorption lines for weather and climate

    NASA Astrophysics Data System (ADS)

    Kursinski, E. R.; Ward, D.; Otarola, A. C.; McGhee, J.; Stovern, M.; Sammler, K.; Reed, H.; Erickson, D.; McCormick, C.; Griggs, E.

    2016-05-01

    Significantly reducing weather and climate prediction uncertainty requires global observations with substantially higher information content than present observations provide. While GPS occultations have provided a major advance, GPS observations of the atmosphere are limited by wavelengths chosen specifically to minimize interaction with the atmosphere. Significantly more information can be obtained via satellite to satellite occultations made at wavelengths chosen specifically to characterize the atmosphere. Here we describe such a system that will probe cm- and mmwavelength water vapor absorption lines called the Active Temperature, Ozone and Moisture Microwave Spectrometer (ATOMMS). Profiling both the speed and absorption of light enables ATOMMS to profile temperature, pressure and humidity simultaneously, which GPS occultations cannot do, as well as profile clouds and turbulence. We summarize the ATOMMS concept and its theoretical performance. We describe field measurements made with a prototype ATOMMS instrument and several important capabilities demonstrated with those ground based measurements including retrieving temporal variations in path-averaged water vapor to 1%, in clear, cloudy and rainy conditions, up to optical depths of 17, remotely sensing turbulence and determining rain rates. We conclude with a vision of a future ATOMMS low Earth orbiting satellite constellation designed to take advantage of synergies between observational needs for weather and climate, ATOMMS unprecedented orbital remote sensing capabilities and recent cubesat technological innovations that enable a constellation of dozens of very small spacecraft to achieve many critical, but as yet unfulfilled, monitoring and forecasting needs.

  2. Comparative neurochemical profile of 3,4-methylenedioxymethamphetamine and its metabolite alpha-methyldopamine on key targets of MDMA neurotoxicity.

    PubMed

    Escubedo, E; Abad, S; Torres, I; Camarasa, J; Pubill, D

    2011-01-01

    The neurotoxicity of MDMA or "Ecstasy" in rats is selectively serotonergic, while in mice it is both dopaminergic and serotonergic. MDMA metabolism may play a key role in this neurotoxicity. The function of serotonin and dopamine transporter and the effect of MDMA and its metabolites on them are essential to understand MDMA neurotoxicity. The aim of the present study was to investigate and compare the effects of MDMA and its metabolite alpha-methyldopamine (MeDA) on several molecular targets, mainly the dopamine and serotonin transporter functionality, to provide evidence for the role of this metabolite in the neurotoxicity of MDMA in rodents. MeDA had no affinity for the serotonin transporter but competed with serotonin for its uptake. It had no persistent effects on the functionalism of the serotonin transporter, in contrast to the effect of MDMA. Moreover, MeDA inhibited the uptake of dopamine into the serotonergic terminal and also MAO(B) activity. MeDA inhibited dopamine uptake with a lower IC(50) value than MDMA. After drug washout, the inhibition by MeDA persisted while that of MDMA was significantly reduced. The effect of MDMA on the dopamine transporter is related with dopamine release from vesicular stores, as this inhibition disappeared in reserpine-treated animals. However, the effect of MeDA seems to be a persistent conformational change of this transporter. Moreover, in contrast with MDMA, MeDA did not show affinity for nicotinic receptors, so no effects of MeDA derived from these interactions can be expected. The metabolite reduced cell viability at lower concentrations than MDMA. Apoptosis plays a key role in MDMA induced cellular toxicity but necrosis is the major process involved in MeDA cytotoxicity. We conclude that MeDA could protect against the serotonergic lesion induced by MDMA but potentiate the dopaminergic lesion as a result of the persistent blockade of the dopamine transporter induced this metabolite. PMID:21074589

  3. Analysis of gene expression profile in pollen development of recessive genic male sterile Brassica napus L. line S45A.

    PubMed

    Chen, Yuning; Lei, Shaolin; Zhou, Zhengfu; Zeng, Fangqin; Yi, Bin; Wen, Jing; Shen, Jinxiong; Ma, Chaozhi; Tu, Jinxing; Fu, Tingdong

    2009-09-01

    Male sterility in a near-isogenic line S45AB after 25 generations of subcrossing is controlled by two pairs of duplicate genes. The genotype of S45A is Bnms1Bnms1Bnms2Bnms2, and that of S45B is BnMs1Bnms1Bnms2Bnms2, respectively. Histological observations revealed that abnormal anther development appeared in the tapetum and pollen exine during the tetrad stage. This male sterility was characterized by hypertrophy of the tapetal cells at the tetrad stage and a complete lack of microspore exine after the release of microspores from the tetrads. To elucidate the mechanism of this recessive genic male sterility, the flower bud expression profiles of the S45A and S45B lines were analyzed using an Arabidopsis thaliana ATH1 oligonucleotide array. When compared with the S45B line, 69 genes were significantly downregulated, and 46 genes were significantly upregulated in the S45A line. Real-time polymerase chain reaction (PCR) was then used to verify the results of the microarray analysis, and the majority of the downregulated genes in the S45A line were abundantly and specifically expressed in the anther. The results of the real-time PCR suggest that Bnms1 might be involved in the metabolism of lipid/fatty acids, and the homologous mutation of Bnms1 may either block the biosynthesis of sporopollenin or block sporopollenin from being deposited on the microspore surface, thus, preventing pollen exine formation. The role of Bnms1 in the regulatory network of exine formation is also discussed as well. PMID:19562345

  4. Quantitative Profiling of Protein Tyrosine Kinases in Human Cancer Cell Lines by Multiplexed Parallel Reaction Monitoring Assays.

    PubMed

    Kim, Hye-Jung; Lin, De; Lee, Hyoung-Joo; Li, Ming; Liebler, Daniel C

    2016-02-01

    Protein tyrosine kinases (PTKs) play key roles in cellular signal transduction, cell cycle regulation, cell division, and cell differentiation. Dysregulation of PTK-activated pathways, often by receptor overexpression, gene amplification, or genetic mutation, is a causal factor underlying numerous cancers. In this study, we have developed a parallel reaction monitoring-based assay for quantitative profiling of 83 PTKs. The assay detects 308 proteotypic peptides from 54 receptor tyrosine kinases and 29 nonreceptor tyrosine kinases in a single run. Quantitative comparisons were based on the labeled reference peptide method. We implemented the assay in four cell models: 1) a comparison of proliferating versus epidermal growth factor-stimulated A431 cells, 2) a comparison of SW480Null (mutant APC) and SW480APC (APC restored) colon tumor cell lines, and 3) a comparison of 10 colorectal cancer cell lines with different genomic abnormalities, and 4) lung cancer cell lines with either susceptibility (11-18) or acquired resistance (11-18R) to the epidermal growth factor receptor tyrosine kinase inhibitor erlotinib. We observed distinct PTK expression changes that were induced by stimuli, genomic features or drug resistance, which were consistent with previous reports. However, most of the measured expression differences were novel observations. For example, acquired resistance to erlotinib in the 11-18 cell model was associated not only with previously reported up-regulation of MET, but also with up-regulation of FLK2 and down-regulation of LYN and PTK7. Immunoblot analyses and shotgun proteomics data were highly consistent with parallel reaction monitoring data. Multiplexed parallel reaction monitoring assays provide a targeted, systems-level profiling approach to evaluate cancer-related proteotypes and adaptations. Data are available through Proteome eXchange Accession PXD002706. PMID:26631510

  5. Effect of Acinetobacter sp on metalaxyl degradation and metabolite profile of potato seedlings (Solanum tuberosum L.) alpha variety.

    PubMed

    Zuno-Floriano, Fabiola G; Miller, Marion G; Aldana-Madrid, Maria L; Hengel, Matt J; Gaikwad, Nilesh W; Tolstikov, Vladimir; Contreras-Cortés, Ana G

    2012-01-01

    One of the most serious diseases in potato cultivars is caused by the pathogen Phytophthora infestans, which affects leaves, stems and tubers. Metalaxyl is a fungicide that protects potato plants from Phytophthora infestans. In Mexico, farmers apply metalaxyl 35 times during the cycle of potato production and the last application is typically 15 days before harvest. There are no records related to the presence of metalaxyl in potato tubers in Mexico. In the present study, we evaluated the effect of Acinetobacter sp on metalaxyl degradation in potato seedlings. The effect of bacteria and metalaxyl on the growth of potato seedlings was also evaluated. A metabolite profile analysis was conducted to determine potential molecular biomarkers produced by potato seedlings in the presence of Acinetobacter sp and metalaxyl. Metalaxyl did not affect the growth of potato seedlings. However, Acinetobacter sp strongly affected the growth of inoculated seedlings, as confirmed by plant length and plant fresh weights which were lower in inoculated potato seedlings (40% and 27%, respectively) compared to the controls. Acinetobacter sp also affected root formation. Inoculated potato seedlings showed a decrease in root formation compared to the controls. LC-MS/MS analysis of metalaxyl residues in potato seedlings suggests that Acinetobacter sp did not degrade metalaxyl. GC-TOF-MS platform was used in metabolic profiling studies. Statistical data analysis and metabolic pathway analysis allowed suggesting the alteration of metabolic pathways by both Acinetobacter sp infection and metalaxyl treatment. Several hundred metabolites were detected, 137 metabolites were identified and 15 metabolic markers were suggested based on statistical change significance found with PLS-DA analysis. These results are important for better understanding the interactions of putative endophytic bacteria and pesticides on plants and their possible effects on plant metabolism. PMID:22363586

  6. Effect of Acinetobacter sp on Metalaxyl Degradation and Metabolite Profile of Potato Seedlings (Solanum tuberosum L.) Alpha Variety

    PubMed Central

    Zuno-Floriano, Fabiola G.; Miller, Marion G.; Aldana-Madrid, Maria L.; Hengel, Matt J.; Gaikwad, Nilesh W.; Tolstikov, Vladimir; Contreras-Cortés, Ana G.

    2012-01-01

    One of the most serious diseases in potato cultivars is caused by the pathogen Phytophthora infestans, which affects leaves, stems and tubers. Metalaxyl is a fungicide that protects potato plants from Phytophthora infestans. In Mexico, farmers apply metalaxyl 35 times during the cycle of potato production and the last application is typically 15 days before harvest. There are no records related to the presence of metalaxyl in potato tubers in Mexico. In the present study, we evaluated the effect of Acinetobacter sp on metalaxyl degradation in potato seedlings. The effect of bacteria and metalaxyl on the growth of potato seedlings was also evaluated. A metabolite profile analysis was conducted to determine potential molecular biomarkers produced by potato seedlings in the presence of Acinetobacter sp and metalaxyl. Metalaxyl did not affect the growth of potato seedlings. However, Acinetobacter sp strongly affected the growth of inoculated seedlings, as confirmed by plant length and plant fresh weights which were lower in inoculated potato seedlings (40% and 27%, respectively) compared to the controls. Acinetobacter sp also affected root formation. Inoculated potato seedlings showed a decrease in root formation compared to the controls. LC-MS/MS analysis of metalaxyl residues in potato seedlings suggests that Acinetobacter sp did not degrade metalaxyl. GC–TOF–MS platform was used in metabolic profiling studies. Statistical data analysis and metabolic pathway analysis allowed suggesting the alteration of metabolic pathways by both Acinetobacter sp infection and metalaxyl treatment. Several hundred metabolites were detected, 137 metabolites were identified and 15 metabolic markers were suggested based on statistical change significance found with PLS-DA analysis. These results are important for better understanding the interactions of putative endophytic bacteria and pesticides on plants and their possible effects on plant metabolism. PMID:22363586

  7. Detection of high affinity receptor sites for IL 1. beta. on a human B lymphoblastoid line which fail to recognize IL 1. cap alpha

    SciTech Connect

    Chin, J.; Cameron, P.; Sigal, N.H.; Schmidt, J.A.

    1986-03-05

    A large number of EBV-transformed human B lines were screened for their ability to bind human pI 6.8 IL 1 (IL 1..beta..) which was labeled to high specific radioactivity with Bolton-Hunter reagent. One of these, designated 2C2, bound (/sup 125/)I-IL 1 in a saturable dose-dependent fashion. Scatchard analysis of direct binding data obtained at equilibrium suggested a single family of receptor sites, at approx. 10,000 sites per cell, with a K/sub d/ = 1.5 +/- 0.2 (+SD) nM. Competition experiments with cold pI 6.8 IL 1 gave a K/sub i/ = 1.0 +/- 0.3 nM. No competition was seen with a 20-fold molar excess of human IL 2, human gamma-INF, or the pI 5.2 and pI 5.4 species of human IL 1. These anionic species of IL 1 have recently been purified to homogeneity by us from monocyte culture supernatants. Amino acid sequence analysis of the pI 5.4 species demonstrates that it is encoded by the recently reported IL 1..cap alpha.. cDNA. Cross linking of pI 6.8 (/sup 125/)I-IL 1 to intact 2C2 cells with increasing amounts of cross linker revealed a single band with a MW congruent to 80,000. Cross-linking was totally abolished by excess unlabeled pI 6.8 IL 1 but not by excess pI 5.4 IL 1. These results show that the receptor for IL 1..beta.. on 2C2 cells is highly specific for one species of human IL 1 and raises the possibility that IL 1..cap alpha.. and IL 1..beta.., though very similar in their biological properties, have separate receptor sites.

  8. Interstellar Hα Line Profiles toward HD 93521 and the Lockman Window

    NASA Astrophysics Data System (ADS)

    Hausen, N. R.; Reynolds, R. J.; Haffner, L. M.; Tufte, S. L.

    2002-02-01

    We have used the Wisconsin Hα Mapper (WHAM) facility to measure the interstellar Hα emission toward the high Galactic latitude O star HD 93521 (l=183.1d, b=+62.2d). Three emission components were detected along this line of sight. These components have radial velocities of -10, -51, and -90 km s-1 with respect to the local standard of rest (LSR) and have Hα intensities of 0.20, 0.15, and 0.023 R, respectively, corresponding to emission measures of 0.55, 0.42, and 0.06 cm-6 pc. We have also measured the Hα emission toward the direction l=148.5d, b=+53.0d, which lies in the region of exceptionally low H I column density known as the Lockman Window. An emission component is detected in this direction at -1 km s-1 (LSR), with an intensity of 0.20 R (0.55 cm-6 pc). In addition, we studied the direction l=163.5d, b=+53.5d. No Galactic emission was detected along this line of sight, and upper limits on the possible intensity of Galactic emission toward this direction are 0.11 R at the LSR and 0.06 R at -50 km s-1. As part of the process of separating the interstellar from the terrestrial emission, we also detected and characterized 12 faint (~0.03-0.15 R), unidentified atmospheric lines present in WHAM Hα spectra. Finally, we have used WHAM to obtain [O I] λ6300 spectra along the line of sight toward HD 93521. We do not conclusively detect interstellar [O I] emission toward the star, but place an upper limit of 0.060 R on the [O I] intensity of the intermediate-velocity (-51 km s-1) component. If the temperature of the gas is 10,000 K, this limit implies that, within the Hα-emitting region, the hydrogen ionization fraction n(H+)/n(H total)>0.6.

  9. Descriptions of the neutral gas outflow in Comets P/Halley and Wilson (1987 VII) from analyses of velocity-resolved H2O line profiles

    NASA Technical Reports Server (NTRS)

    Larson, Harold P.; Hu, Hong-Yao; Hsieh, K. C.; Weaver, Harold A.; Mumma, Michael J.

    1991-01-01

    The spatial distribution and expansion velocity of the Comets Wilson (1987 VII) and pre- and postperihelion P/Halley are derived on the bases of velocity-resolved H2O spectral line profiles, using a kinematic model which synthesizes line profiles for comparison with observed line shapes. The results thus obtained demonstrate that the spherically symmetric outflow at constant velocity is a poor characterization of cometary neutral-gas outflow. While the radial dependence of the H2O expansion velocity is noted to be consistent with theoretically envisioned trends, the high H2O outflow velocity observed in Comet Wilson resists reconciliation with any existing kinematic model.

  10. Data on alteration of hormone and growth factor receptor profiles over progressive passages of breast cancer cell lines representing different clinical subtypes.

    PubMed

    Nair, Madhumathy G; Desai, Krisha; Prabhu, Jyothi S; Hari, P S; Remacle, Jose; Sridhar, T S

    2016-09-01

    Human breast cancers are a highly heterogeneous group of tumours consisting of several molecular subtypes with a variable profile of hormone, growth factor receptors and cytokeratins [1]. Here, the data shows immunofluorescence profiling of four different cell lines belonging to distinct clinical subtypes of breast cancer. Post revival, the cell lines were passaged in culture and immunophenotyping was done for ER, HER-2, AR and EGFR. Data for the markers from early passage (5th) through passages as late as 25 for the different cell lines is presented. PMID:27508248

  11. Mitochondrial-related gene expression profiles suggest an important role of PGC-1alpha in the compensatory mechanism of endemic dilated cardiomyopathy

    SciTech Connect

    He, Shu-Lan; Tan, Wu-Hong; Zhang, Zeng-Tie; Zhang, Feng; Qu, Cheng-Juan; Lei, Yan-Xia; Zhu, Yan-He; Yu, Han-Jie; Xiang, You-Zhang; and others

    2013-10-15

    Keshan disease (KD) is an endemic dilated cardiomyopathy with unclear etiology. In this study, we compared mitochondrial-related gene expression profiles of peripheral blood mononuclear cells (PBMCs) derived from 16 KD patients and 16 normal controls in KD areas. Total RNA was isolated, amplified, labeled and hybridized to Agilent human 4×44k whole genome microarrays. Mitochondrial-related genes were screened out by the Third-Generation Human Mitochondria-Focused cDNA Microarray (hMitChip3). Quantitative real-time PCR, immunohistochemical and biochemical parameters related mitochondrial metabolism were conducted to validate our microarray results. In KD samples, 34 up-regulated genes (ratios≥2.0) were detected by significance analysis of microarrays and ingenuity systems pathway analysis (IPA). The highest ranked molecular and cellular functions of the differentially regulated genes were closely related to amino acid metabolism, free radical scavenging, carbohydrate metabolism, and energy production. Using IPA, 40 significant pathways and four significant networks, involved mainly in apoptosis, mitochondrion dysfunction, and nuclear receptor signaling were identified. Based on our results, we suggest that PGC-1alpha regulated energy metabolism and anti-apoptosis might play an important role in the compensatory mechanism of KD. Our results may lead to the identification of potential diagnostic biomarkers for KD in PBMCs, and may help to understand the pathogenesis of KD. Highlights: • Thirty-four up-regulated genes were detected in KD versus health controls. • Forty pathways and four networks were detected in KD. • PGC-1alpha regulated energy metabolism and anti-apoptosis in KD.

  12. Radial profile measurement of electron temperature in edge stochastic magnetic field layer of LHD using intensity ratio of extreme ultraviolet line emissions

    SciTech Connect

    Wang Erhui; Morita, Shigeru; Kobayashi, Masahiko; Murakami, Izumi; Goto, Motoshi; Dong Chunfeng

    2012-10-15

    Vertical profile of neon line emissions in 30-650 A wavelength range has been observed in horizontally elongated plasma cross section of Large Helical Device (LHD). Intensity ratio between the neon line emissions is studied to measure the radial profile of electron temperature in the edge stochastic magnetic field layer of LHD. The edge temperature profile successfully obtained from the line ratio of NeVIII 2s-3p to 2p-3s transitions is compared with the simulation based on three-dimensional edge transport code. The result shows a reasonably good agreement with the edge temperature profile analyzed from atomic data and analysis structure code. The electron temperature at last closed flux surface measured from the intensity ratio is also in good agreement with that measured from Thomson scattering.

  13. [Determination of relative error of pressure-broadening linewidth for the experimentally indistinguishable overlapped spectral lines with Voigt profile].

    PubMed

    Lin, Jie-Li; Huang, Yi-Qing; Lu, Hong

    2005-01-01

    The simulation and fitting of the overlapped spectral lines with Voigt profile were presented in this paper. The relative errors epsilon of the fitted pressure-broadening linewidth when taking the overlapped spectral line as one spectrum were discussed in detail. The relationship between such error and the two spectral lines center distance deltav0, and theoretical pressure-broadening linewidth deltav(L)0 were analyzed. Epsilon is found to be very large and the relationship between epsilon and deltav0, deltav(L)0 is very complicated when the value of pressure-broadening linewidth is considerably less than that of Dopplerian one deltavD. When deltav(L)0 is comparative to deltaVD the relationship between epsilon and deltav0 is close to the smooth two-order polynomial curve. However, the slop of this curve is negative while deltav(L)0 is smaller than deltavD and is positive when larger. Generally, epsilon decreases with the increase of proportion of deltav(l)0 to the whole spectral linewidth. All the above conclusion and corresponding data are the significant reference to determine the precise pressure-broadening coefficient from the experimentally indistinguishable overlapped spectrum, as well as to correct the fitted pressure-broadening linewidth. PMID:15852837

  14. Lyman-Alpha Observations of High Radial Velocity Stars

    NASA Astrophysics Data System (ADS)

    Bookbinder, Jay

    1990-12-01

    H I LYMAN -ALPHA (LY-A) IS ONE OF THE MOST IMPORTANT LINES EMITTED BY PLASMA IN THE TEMPERATURE RANGE OF 7000 TO 10 TO THE FIFTH POWER K IN LATE-TYPE STARS. IT IS A MAJOR COMPONENT OF THE TOTAL RADIATIVE LOSS RATE, AND IT PLAYS A CRUCIAL ROLE IN DETERMINING THE ATMOSPHERIC STRUCTURE AND IN FLUORESCING OTHER UV LINES. YET IT IS ALSO THE LEAST STUDIED MAJOR LINE IN THE FAR UV, BECAUSE MOST OF THE LINE FLUX IS ABSORBED BY THE ISM ALONG THE LINE OF SIGHT AND BECAUSE IT IS STRONGLY COMTAMINATED BY THE GEOCORONAL BACKGROUND. A KNOWLEDGE OF THE Ly-A PROFILE IS ALSO IMPORTANT FOR STUDIES OF DEUTERIUM IN THE INTERSTELLAR MEDIUM. BY OBSERVING HIGH RADIAL VELOCITY STARS WE WILL OBTAIN FOR THE FIRST TIME HIGH RESOLUTION SPECTRA OF THE CORE OF A STELLAR H I LYMAN-A EMISSION LINE PROFILE.

  15. Liposomal formulation of {alpha}-tocopheryl maleamide: In vitro and in vivo toxicological profile and anticancer effect against spontaneous breast carcinomas in mice

    SciTech Connect

    Turanek, Jaroslav Wang Xiufang; Knoetigova, Pavlina; Koudelka, Stepan; Dong Lanfeng; Vrublova, Eva; Mahdavian, Elahe; Prochazka, Lubomir; Sangsura, Smink; Vacek, Antonin; Salvatore, Brian A.; Neuzil, Jiri

    2009-06-15

    The vitamin E analogue {alpha}-tocopheryl succinate ({alpha}-TOS) is an efficient anti-cancer drug. Improved efficacy was achieved through the synthesis of {alpha}-tocopheryl maleamide ({alpha}-TAM), an esterase-resistant analogue of {alpha}-tocopheryl maleate. In vitro tests demonstrated significantly higher cytotoxicity of {alpha}-TAM towards cancer cells (MCF-7, B16F10) compared to {alpha}-TOS and other analogues prone to esterase-catalyzed hydrolysis. However, in vitro models demonstrated that {alpha}-TAM was cytotoxic to non-malignant cells (e.g. lymphocytes and bone marrow progenitors). Thus we developed lyophilized liposomal formulations of both {alpha}-TOS and {alpha}-TAM to solve the problem with cytotoxicity of free {alpha}-TAM (neurotoxicity and anaphylaxis), as well as the low solubility of both drugs. Remarkably, neither acute toxicity nor immunotoxicity implicated by in vitro tests was detected in vivo after application of liposomal {alpha}-TAM, which significantly reduced the growth of cancer cells in hollow fiber implants. Moreover, liposomal formulation of {alpha}-TAM and {alpha}-TOS each prevented the growth of tumours in transgenic FVB/N c-neu mice bearing spontaneous breast carcinomas. Liposomal formulation of {alpha}-TAM demonstrated anti-cancer activity at levels 10-fold lower than those of {alpha}-TOS. Thus, the liposomal formulation of {alpha}-TAM preserved its strong anti-cancer efficacy while eliminating the in vivo toxicity found of the free drug applied in DMSO. Liposome-based targeted delivery systems for analogues of vitamin E are of interest for further development of efficient and safe drug formulations for clinical trials.

  16. Profiling polyphenols of two diploid strawberry (Fragaria vesca) inbred lines using UHPLC-HRMS(n.).

    PubMed

    Sun, Jianghao; Liu, Xianjin; Yang, Tianbao; Slovin, Janet; Chen, Pei

    2014-03-01

    Phenolic compounds in the fruits of two diploid strawberries (Fragaria vesca f. semperflorens) inbred lines-Ruegen F7-4 (a red-fruited genotype) and YW5AF7 (a yellow-fruited genotype) were characterised using ultra-high-performance liquid chromatography coupled with tandem high-resolution mass spectrometry (UHPLC-HRMS(n)). The changes of anthocyanin composition during fruit development and between Ruegen F7-4 and YW5AF7 were studied. About 67 phenolic compounds, including taxifolin 3-O-arabinoside, glycosides of quercetin, kaempferol, cyanidin, pelargonidin, peonidin, ellagic acid derivatives, and other flavonols were identified in these two inbred lines. Compared to the regular octoploid strawberry, unique phenolic compounds were found in F. vesca fruits, such as taxifolin 3-O-arabinoside (both) and peonidin 3-O-malonylglucoside (Ruegen F7-4). The results provide the basis for comparative analysis of polyphenolic compounds in yellow and red diploid strawberries, as well as with the cultivated octoploid strawberries. PMID:24176345

  17. Profiling polyphenols of two diploid strawberry (Fragaria vesca) inbred lines using UHPLC-HRMSn

    PubMed Central

    Sun, Jianghao; Liu, Xianjin; Yang, Tianbao; Slovin, Janet; Chen, Pei

    2013-01-01

    Phenolic compounds in the fruits of two diploid strawberries (Fragaria vesca f. semperflorens) inbred lines-Ruegen F7-4 (a red-fruited genotype) and YW5AF7 (a yellow-fruited genotype) were characterised using ultra-high-performance liquid chromatography coupled with tandem high-resolution mass spectrometry (UHPLC-HRMSn). The changes of anthocyanin composition during fruit development and between Ruegen F7-4 and YW5AF7 were studied. About 67 phenolic compounds, including taxifolin 3-O-arabinoside, glycosides of quercetin, kaempferol, cyanidin, pelargonidin, peonidin, ellagic acid derivatives, and other flavonols were identified in these two inbred lines. Compared to the regular octoploid strawberry, unique phenolic compounds were found in F. vesca fruits, such as taxifolin 3-O-arabinoside (both) and peonidin 3-O-malonylglucoside (Ruegen F7-4). The results provide the basis for comparative analysis of polyphenolic compounds in yellow and red diploid strawberries, as well as with the cultivated octoploid strawberries. PMID:24176345

  18. Estimating genetic parameters for fertility in dairy cows from in-line milk progesterone profiles.

    PubMed

    Tenghe, A M M; Bouwman, A C; Berglund, B; Strandberg, E; Blom, J Y; Veerkamp, R F

    2015-08-01

    The aim of this study was to define endocrine fertility traits from in-line milk progesterone (P4) records and to estimate genetic parameters for these traits. Correlations of classical fertility (calving interval and calving to first service) and milk production traits with endocrine fertility traits were also estimated. In-line milk P4 records (n=160,952) collected from June 2009 through November 2013 for 2,273 lactations of 1,561 Holstein-Friesian cows in 12 commercial herds in the Netherlands were analyzed for (the log of) the number of days from calving till commencement of luteal activity (lnC-LA), proportion of samples between 25 and 60 d in milk with luteal activity (PLA), presence or absence of luteal activity for a cow between 25 and 60 d in milk, interval from commencement of luteal activity to first service (CLAFS), first luteal phase length, length of first interluteal interval, and length of first interovulatory interval. Milk P4 records were sampled, on average, every 2 d. Genetic parameters were estimated using a mixed linear animal model. Heritability estimates (±SE) of endocrine fertility traits were 0.12±0.05 for lnC-LA, 0.12±0.05 for PLA, and 0.11±0.06 for CLAFS, and their repeatability estimates were 0.29±0.04, 0.21±0.04, and 0.15±0.06, respectively. The genetic correlation of lnC-LA with PLA was -0.91±0.06 and with CLAFS was -0.56±0.25. The genetic correlations of lnC-LA were 0.26±0.33 with calving interval and 0.37±0.21 with calving to first service. Genetic correlations of the milk production traits with lnC-LA ranged from 0.04 to 0.18 and 0.07 to 0.65 with classical fertility traits. The phenotypic correlations of all endocrine fertility traits with milk production traits were close to zero (0.01 to 0.07). This study shows that in-line P4 records can be used to define and explore several heritable endocrine fertility traits in dairy cows and might help in selection for improved fertility. PMID:26004838

  19. Observation of Quiet Limb in He I 1083.0 nm, H Paschen alpha1281.8 nm and H Brackett gamma 2166.1 nm lines

    NASA Astrophysics Data System (ADS)

    Prasad Choudhary, Debi

    2016-05-01

    In this paper, we shall present the results of an observational study of the quiet solar limb in the near infrared lines using the New IR Array Camera (NAC) and the vertical spectrograph at the focal plane of McMath-Pierce telescope. The NAC, at the exit port of the spectrograph, was used to record the limb spectrum in HeI 1083.0 nm, Hydrogen Paschen 1281.8 nm and Brackett 2165.5 nm wavelength regions. The NAC is a 1024x1024 InSb Alladin III Detector operating over 1-5 micron range with high density sampling at 0.018 arc second/pixel. The all-reflective optical train minimizes number of surfaces and eliminates ghosts leading to low scatter, ghost-free optics. The close-cycle cryogenic provides a stable cooling environment over six hour period with an accuracy of 0.01K leading to low dark current. The low read out noise combined with low scattered light and dark current makes NAC an ideal detector for making high quality infrared spectral observations of solar limb. The limb spectrums were obtained by placing the spectrograph slit perpendicular to the limb at an interval of 10 degrees around the solar disk. We shall report the intensity profile, line-of-sight velocity and line width distribution around the sun derived from the spectra along the slit.

  20. Doppler line profile analysis for a multichannel Fabry-Perot interferometer

    NASA Technical Reports Server (NTRS)

    Killeen, T. L.; Hays, P. B.

    1984-01-01

    A new method of instrument calibration and data analysis is presented for single-etalon interferometric measurements of winds, temperatures, and emission line intensities. The technique has been developed for the multichannel Fabry-Perot interferometer on the Dynamics Explorer spacecraft. A numerical representation of the instrumental transfer function is used based on a truncated Fourier series with empirically determined coefficients. The numerical form is compared with the conventional analytic form. The Fourier coefficients describing the instrument function are generated at the wavelength of a stable He-Ne laser and are translated to other wavelengths using an interpolation technique for both phase and power. A quasi-linear least-squares fitting process involving matrices provides for a rapid and accurate data reduction.

  1. Uranus (3-0) H/sub 2/ quadrupole line profiles

    SciTech Connect

    Trafton, L.

    1987-04-01

    Spectra of Uranus' S3(0) and S3(1) H/sub 2/ quadrupole lines, obtained during the 1978-1980 apparitions, are analyzed, and are found to require the presence of a deep cloud. Modifications of the Baines and Bergstralh (1986) standard model, including an additional haze layer above the 16-km-am H/sub 2/ level which contains strongly absorbing particles, are needed to fit the observations. For a Rayleigh phase function, such a haze (uniformly mixed with the gas above this level) would have an absorption optical depth of 0.16 and a single scattering particle albedo of 0.30. This modification would imply a fraction of normal H/sub 2/ equal to 0.25 + or - 0.10, in agreement with the Baines and Bergstralh standard model. 35 references.

  2. Small RNA Profiles of the Rice PTGMS Line Wuxiang S Reveal miRNAs Involved in Fertility Transition

    PubMed Central

    Zhang, Hongyuan; Hu, Jihong; Qian, Qian; Chen, Hao; Jin, Jing; Ding, Yi

    2016-01-01

    MicroRNAs (miRNAs) play key roles in the regulation of plant growth and developmental processes. In this study, RNA-seq was used to examine the expression profiles of miRNAs in a novel, photo-thermosensitive genic male sterile (PTGMS) rice line, Wuxiang S (WXS), during fertility transition. A total of 497 known miRNAs and 273